Query 018019
Match_columns 362
No_of_seqs 301 out of 2545
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1462 Translation initiation 100.0 4.8E-47 1E-51 343.6 19.4 295 1-327 8-307 (433)
2 KOG1322 GDP-mannose pyrophosph 100.0 8.2E-40 1.8E-44 291.4 23.5 231 2-330 9-244 (371)
3 COG0448 GlgC ADP-glucose pyrop 100.0 1.4E-40 3.1E-45 306.8 16.6 238 2-331 5-262 (393)
4 COG1208 GCD1 Nucleoside-diphos 100.0 8.3E-38 1.8E-42 296.6 27.4 236 2-331 1-236 (358)
5 PRK02862 glgC glucose-1-phosph 100.0 1.4E-36 3E-41 296.1 24.5 253 2-330 3-273 (429)
6 PRK00844 glgC glucose-1-phosph 100.0 2.8E-36 6.1E-41 292.4 25.0 245 2-331 5-277 (407)
7 PLN02241 glucose-1-phosphate a 100.0 7.6E-36 1.6E-40 291.6 25.4 256 2-332 3-283 (436)
8 KOG1461 Translation initiation 100.0 1.4E-35 3E-40 283.7 25.7 261 3-334 25-294 (673)
9 PRK00725 glgC glucose-1-phosph 100.0 2.3E-35 5.1E-40 287.1 26.0 245 2-331 15-288 (425)
10 PRK05293 glgC glucose-1-phosph 100.0 2.6E-35 5.6E-40 283.8 25.4 237 2-331 3-259 (380)
11 cd06428 M1P_guanylylT_A_like_N 100.0 2.9E-34 6.3E-39 262.1 24.4 231 5-329 1-257 (257)
12 cd06425 M1P_guanylylT_B_like_N 100.0 6.4E-34 1.4E-38 256.1 25.6 228 3-330 1-233 (233)
13 cd04198 eIF-2B_gamma_N The N-t 100.0 1.4E-34 3.1E-39 256.8 20.2 211 3-220 1-214 (214)
14 PF00483 NTP_transferase: Nucl 100.0 3.2E-34 7E-39 260.2 22.4 236 4-331 1-247 (248)
15 TIGR01105 galF UTP-glucose-1-p 100.0 2.3E-33 4.9E-38 259.5 27.3 234 2-329 3-276 (297)
16 COG1209 RfbA dTDP-glucose pyro 100.0 3.1E-33 6.7E-38 245.2 23.6 234 3-331 1-237 (286)
17 TIGR02091 glgC glucose-1-phosp 100.0 1.4E-33 3E-38 270.1 23.1 241 5-332 1-260 (361)
18 cd04197 eIF-2B_epsilon_N The N 100.0 2.9E-33 6.2E-38 249.1 21.8 203 3-220 1-217 (217)
19 TIGR01208 rmlA_long glucose-1- 100.0 2.9E-32 6.2E-37 260.1 28.5 233 4-332 1-237 (353)
20 TIGR02092 glgD glucose-1-phosp 100.0 1.7E-33 3.7E-38 270.1 19.3 237 2-333 2-256 (369)
21 PRK10122 GalU regulator GalF; 100.0 8.8E-32 1.9E-36 249.5 28.2 237 2-331 3-279 (297)
22 TIGR02623 G1P_cyt_trans glucos 100.0 5.7E-32 1.2E-36 246.2 26.0 226 4-332 1-247 (254)
23 cd02538 G1P_TT_short G1P_TT_sh 100.0 6.9E-32 1.5E-36 243.9 26.2 231 3-329 1-237 (240)
24 PRK15480 glucose-1-phosphate t 100.0 9.3E-32 2E-36 248.2 27.1 234 1-330 1-241 (292)
25 KOG1460 GDP-mannose pyrophosph 100.0 1.6E-33 3.5E-38 247.4 14.2 289 1-362 1-311 (407)
26 cd02541 UGPase_prokaryotic Pro 100.0 3.2E-31 7E-36 243.3 26.2 236 3-330 1-265 (267)
27 TIGR01207 rmlA glucose-1-phosp 100.0 1E-30 2.2E-35 240.9 26.2 232 4-330 1-237 (286)
28 TIGR01099 galU UTP-glucose-1-p 100.0 8.1E-31 1.8E-35 239.7 25.4 230 3-325 1-260 (260)
29 cd04189 G1P_TT_long G1P_TT_lon 100.0 2.7E-30 5.9E-35 232.8 27.8 232 3-331 1-235 (236)
30 cd02507 eIF-2B_gamma_N_like Th 100.0 3.8E-31 8.3E-36 235.2 19.9 206 3-220 1-216 (216)
31 cd02524 G1P_cytidylyltransfera 100.0 4.8E-30 1.1E-34 233.6 25.7 224 5-330 1-246 (253)
32 cd06422 NTP_transferase_like_1 100.0 3.3E-30 7.1E-35 230.0 23.3 216 4-325 1-221 (221)
33 PRK13389 UTP--glucose-1-phosph 100.0 1.8E-29 3.8E-34 234.5 27.0 232 3-329 9-279 (302)
34 cd04181 NTP_transferase NTP_tr 100.0 1.4E-28 3E-33 218.6 24.3 199 5-243 1-200 (217)
35 cd06915 NTP_transferase_WcbM_l 100.0 1.7E-28 3.7E-33 218.7 24.7 222 5-325 1-222 (223)
36 cd06426 NTP_transferase_like_2 100.0 2.7E-28 5.9E-33 217.4 24.7 220 5-326 1-220 (220)
37 PRK14355 glmU bifunctional N-a 100.0 5E-28 1.1E-32 238.6 25.8 232 1-331 1-244 (459)
38 PRK14358 glmU bifunctional N-a 100.0 4.3E-28 9.3E-33 239.8 23.8 231 1-331 6-245 (481)
39 COG1207 GlmU N-acetylglucosami 100.0 1.4E-27 3.1E-32 220.7 23.3 202 1-244 1-207 (460)
40 PRK14352 glmU bifunctional N-a 99.9 3.5E-26 7.6E-31 226.7 25.4 233 2-332 4-252 (482)
41 PRK09451 glmU bifunctional N-a 99.9 4.9E-26 1.1E-30 224.4 22.2 197 1-244 4-208 (456)
42 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 5.4E-25 1.2E-29 197.7 23.8 178 5-225 1-182 (231)
43 cd02508 ADP_Glucose_PP ADP-glu 99.9 7.7E-26 1.7E-30 198.7 17.9 129 5-136 1-144 (200)
44 cd02523 PC_cytidylyltransferas 99.9 4.6E-25 9.9E-30 197.9 22.8 176 5-225 1-178 (229)
45 PRK14354 glmU bifunctional N-a 99.9 2.5E-24 5.3E-29 212.5 26.1 181 1-225 1-185 (458)
46 PRK14357 glmU bifunctional N-a 99.9 6.9E-25 1.5E-29 215.8 21.9 176 3-225 1-179 (448)
47 TIGR01173 glmU UDP-N-acetylglu 99.9 4E-24 8.6E-29 210.7 25.1 227 3-330 1-236 (451)
48 PRK14356 glmU bifunctional N-a 99.9 5.8E-24 1.3E-28 209.7 25.5 231 3-331 6-245 (456)
49 COG1210 GalU UDP-glucose pyrop 99.9 6.4E-24 1.4E-28 186.7 22.1 237 3-331 5-271 (291)
50 cd02509 GDP-M1P_Guanylyltransf 99.9 7.5E-24 1.6E-28 194.7 18.6 192 3-226 1-208 (274)
51 PRK14359 glmU bifunctional N-a 99.9 7.7E-23 1.7E-27 200.3 27.0 229 1-331 1-235 (430)
52 PRK14360 glmU bifunctional N-a 99.9 1.6E-23 3.4E-28 206.3 22.0 182 3-226 2-187 (450)
53 PRK14353 glmU bifunctional N-a 99.9 5E-23 1.1E-27 202.6 25.3 229 1-327 4-240 (446)
54 cd02540 GT2_GlmU_N_bac N-termi 99.9 4.5E-22 9.8E-27 178.3 22.1 179 5-226 1-183 (229)
55 TIGR01479 GMP_PMI mannose-1-ph 99.9 1.2E-20 2.7E-25 185.4 20.1 191 3-225 1-209 (468)
56 PRK05450 3-deoxy-manno-octulos 99.9 7.1E-20 1.5E-24 165.9 21.6 186 1-225 1-194 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 1.2E-19 2.5E-24 163.9 21.2 180 3-225 2-191 (239)
58 PRK13368 3-deoxy-manno-octulos 99.8 1.8E-18 4E-23 156.0 20.8 181 1-223 1-187 (238)
59 PRK15460 cpsB mannose-1-phosph 99.7 6.1E-17 1.3E-21 158.0 17.8 194 1-225 4-218 (478)
60 COG0836 {ManC} Mannose-1-phosp 99.7 8.2E-17 1.8E-21 145.1 16.2 194 3-225 2-211 (333)
61 PLN02917 CMP-KDO synthetase 99.7 2.2E-15 4.7E-20 139.4 23.0 200 1-242 46-254 (293)
62 COG1213 Predicted sugar nucleo 99.7 4.5E-16 9.7E-21 134.9 14.1 108 3-119 4-113 (239)
63 PF12804 NTP_transf_3: MobA-li 99.7 3E-16 6.5E-21 132.7 11.6 119 5-138 1-123 (160)
64 TIGR00454 conserved hypothetic 99.6 3.6E-15 7.8E-20 128.7 14.4 122 3-137 1-125 (183)
65 TIGR00466 kdsB 3-deoxy-D-manno 99.6 2E-14 4.4E-19 129.5 18.8 184 5-225 2-194 (238)
66 COG4750 LicC CTP:phosphocholin 99.6 7E-16 1.5E-20 128.3 8.2 104 3-116 1-106 (231)
67 COG2266 GTP:adenosylcobinamide 99.6 3.8E-14 8.3E-19 117.3 12.3 110 3-127 1-112 (177)
68 COG1212 KdsB CMP-2-keto-3-deox 99.6 1E-13 2.2E-18 118.8 15.1 188 1-228 2-195 (247)
69 TIGR00453 ispD 2-C-methyl-D-er 99.6 3.4E-13 7.4E-18 119.8 19.1 115 5-130 2-120 (217)
70 cd04182 GT_2_like_f GT_2_like_ 99.6 6.4E-14 1.4E-18 121.0 14.0 118 3-133 1-123 (186)
71 TIGR03310 matur_ygfJ molybdenu 99.5 1.2E-13 2.6E-18 119.8 13.4 120 5-136 2-125 (188)
72 cd02513 CMP-NeuAc_Synthase CMP 99.5 4.1E-13 8.9E-18 119.7 15.0 123 3-139 2-136 (223)
73 cd02516 CDP-ME_synthetase CDP- 99.5 6.6E-13 1.4E-17 118.0 15.4 123 4-135 2-130 (218)
74 PRK13385 2-C-methyl-D-erythrit 99.5 4E-13 8.7E-18 120.5 13.6 128 1-135 1-132 (230)
75 PRK00155 ispD 2-C-methyl-D-ery 99.5 5.9E-13 1.3E-17 119.2 14.0 121 1-131 2-126 (227)
76 cd02503 MobA MobA catalyzes th 99.5 4E-13 8.6E-18 115.9 11.7 113 3-134 1-116 (181)
77 TIGR03202 pucB xanthine dehydr 99.5 1.3E-12 2.8E-17 113.7 13.5 120 4-132 2-127 (190)
78 PLN02728 2-C-methyl-D-erythrit 99.5 9.2E-13 2E-17 119.2 12.9 121 3-133 25-150 (252)
79 PRK00317 mobA molybdopterin-gu 99.5 1.1E-12 2.4E-17 114.5 12.9 114 1-131 2-119 (193)
80 TIGR02665 molyb_mobA molybdopt 99.4 2.3E-12 4.9E-17 111.7 12.7 118 3-135 1-122 (186)
81 PRK02726 molybdopterin-guanine 99.4 2.6E-12 5.6E-17 112.7 12.9 112 1-128 6-120 (200)
82 PRK09382 ispDF bifunctional 2- 99.4 5.3E-12 1.1E-16 120.5 14.3 125 1-139 4-132 (378)
83 PF01128 IspD: 2-C-methyl-D-er 99.3 1.5E-11 3.2E-16 108.8 11.9 120 3-134 1-126 (221)
84 TIGR03584 PseF pseudaminic aci 99.3 7.2E-11 1.6E-15 105.2 16.3 119 5-139 2-133 (222)
85 COG2068 Uncharacterized MobA-r 99.3 3.3E-11 7.2E-16 102.7 12.8 117 2-130 5-126 (199)
86 COG1211 IspD 4-diphosphocytidy 99.3 3.6E-11 7.8E-16 105.9 12.8 126 1-135 3-134 (230)
87 PRK14489 putative bifunctional 99.3 7.7E-11 1.7E-15 112.8 13.3 119 3-136 6-128 (366)
88 COG0746 MobA Molybdopterin-gua 99.2 6.5E-11 1.4E-15 102.5 10.6 111 1-130 3-116 (192)
89 cd02518 GT2_SpsF SpsF is a gly 99.2 3.2E-10 6.8E-15 101.9 12.6 118 5-135 2-122 (233)
90 PRK00560 molybdopterin-guanine 99.2 3E-10 6.6E-15 99.3 11.7 101 1-122 7-112 (196)
91 PRK14490 putative bifunctional 99.1 4.3E-10 9.2E-15 107.9 12.1 107 2-125 174-283 (369)
92 PRK14500 putative bifunctional 99.0 1.8E-09 3.9E-14 101.9 11.9 107 3-126 161-270 (346)
93 cd04180 UGPase_euk_like Eukary 98.9 1.1E-09 2.4E-14 100.0 5.9 129 4-139 2-172 (266)
94 COG1083 NeuA CMP-N-acetylneura 98.9 2.7E-08 5.8E-13 85.2 11.5 125 1-139 2-135 (228)
95 PF02348 CTP_transf_3: Cytidyl 98.8 3.8E-08 8.2E-13 87.3 11.5 113 4-132 1-120 (217)
96 cd04193 UDPGlcNAc_PPase UDPGlc 98.7 2.2E-06 4.7E-11 80.4 20.0 131 2-139 15-194 (323)
97 COG1861 SpsF Spore coat polysa 98.7 2.1E-07 4.6E-12 80.1 10.5 121 1-134 1-125 (241)
98 PTZ00339 UDP-N-acetylglucosami 98.5 1.4E-05 3E-10 78.4 20.1 131 2-138 106-288 (482)
99 cd00897 UGPase_euk Eukaryotic 98.1 0.00084 1.8E-08 62.1 20.6 190 3-225 4-233 (300)
100 PRK00576 molybdopterin-guanine 97.9 7.6E-05 1.6E-09 64.1 10.1 95 23-130 2-104 (178)
101 PLN02474 UTP--glucose-1-phosph 97.9 0.0019 4.2E-08 63.1 20.4 190 3-225 80-309 (469)
102 PF01704 UDPGP: UTP--glucose-1 97.5 0.006 1.3E-07 59.3 17.0 192 3-226 57-289 (420)
103 COG4284 UDP-glucose pyrophosph 97.4 0.011 2.5E-07 57.1 17.0 130 3-139 106-276 (472)
104 PLN02435 probable UDP-N-acetyl 97.3 0.035 7.5E-07 54.9 19.6 131 3-139 117-299 (493)
105 TIGR03552 F420_cofC 2-phospho- 97.2 0.0019 4.1E-08 56.1 8.7 84 34-127 30-117 (195)
106 cd00761 Glyco_tranf_GTA_type G 96.9 0.036 7.8E-07 44.5 12.9 97 28-126 2-102 (156)
107 cd06424 UGGPase UGGPase cataly 96.7 0.0097 2.1E-07 55.4 9.4 131 4-139 2-180 (315)
108 PLN02830 UDP-sugar pyrophospho 96.7 0.04 8.6E-07 56.1 14.1 133 3-140 129-312 (615)
109 PF00535 Glycos_transf_2: Glyc 96.2 0.11 2.4E-06 42.6 11.7 108 28-137 3-114 (169)
110 cd04179 DPM_DPG-synthase_like 93.7 1 2.2E-05 37.9 10.9 105 29-135 3-113 (185)
111 cd06439 CESA_like_1 CESA_like_ 93.5 2.2 4.8E-05 37.9 13.2 103 21-127 25-135 (251)
112 cd04186 GT_2_like_c Subfamily 93.2 2.3 5E-05 34.7 12.1 97 28-129 2-102 (166)
113 TIGR03532 DapD_Ac 2,3,4,5-tetr 92.5 0.068 1.5E-06 47.8 1.8 24 304-332 42-65 (231)
114 cd04195 GT2_AmsE_like GT2_AmsE 92.5 3.8 8.3E-05 34.9 12.8 99 28-128 3-107 (201)
115 cd06442 DPM1_like DPM1_like re 92.3 1.8 3.8E-05 37.7 10.6 104 28-133 2-110 (224)
116 cd04188 DPG_synthase DPG_synth 92.0 2 4.2E-05 37.3 10.6 106 28-135 2-116 (211)
117 cd06423 CESA_like CESA_like is 91.7 3.3 7.1E-05 33.6 11.1 99 28-128 2-105 (180)
118 cd06427 CESA_like_2 CESA_like_ 91.6 4.2 9.1E-05 36.1 12.5 106 28-136 6-119 (241)
119 cd04184 GT2_RfbC_Mx_like Myxoc 91.2 4.2 9E-05 34.7 11.6 98 28-126 6-108 (202)
120 cd02525 Succinoglycan_BP_ExoA 91.1 3 6.4E-05 36.8 10.9 103 28-133 5-113 (249)
121 PRK10073 putative glycosyl tra 90.9 3.2 7E-05 39.2 11.3 106 27-135 10-119 (328)
122 cd02510 pp-GalNAc-T pp-GalNAc- 89.8 8.9 0.00019 35.4 13.3 102 28-131 3-113 (299)
123 cd04187 DPM1_like_bac Bacteria 89.6 4.5 9.7E-05 33.9 10.3 102 29-133 3-111 (181)
124 PRK14583 hmsR N-glycosyltransf 88.9 7.6 0.00016 38.3 12.6 107 27-136 79-189 (444)
125 PRK10018 putative glycosyl tra 87.7 17 0.00037 33.4 13.4 99 28-128 10-112 (279)
126 cd06433 GT_2_WfgS_like WfgS an 87.6 7.4 0.00016 32.7 10.5 96 28-128 3-102 (202)
127 PRK11204 N-glycosyltransferase 86.8 9.6 0.00021 37.0 11.9 100 27-128 58-161 (420)
128 PLN02726 dolichyl-phosphate be 86.6 8.4 0.00018 34.3 10.6 106 28-135 14-127 (243)
129 TIGR03111 glyc2_xrt_Gpos1 puta 86.4 18 0.00038 35.7 13.5 100 27-128 53-158 (439)
130 cd04192 GT_2_like_e Subfamily 85.2 14 0.00029 32.0 11.0 102 28-131 2-112 (229)
131 cd06437 CESA_CaSu_A2 Cellulose 84.7 26 0.00057 30.6 12.8 97 28-124 6-110 (232)
132 KOG2978 Dolichol-phosphate man 83.8 23 0.0005 30.5 10.8 105 33-138 17-125 (238)
133 KOG2388 UDP-N-acetylglucosamin 83.7 1.3 2.8E-05 43.2 3.9 38 3-44 98-138 (477)
134 PTZ00260 dolichyl-phosphate be 83.4 16 0.00036 34.5 11.3 107 29-135 76-199 (333)
135 cd02511 Beta4Glucosyltransfera 82.2 33 0.00071 30.1 12.3 94 27-129 4-99 (229)
136 cd06435 CESA_NdvC_like NdvC_li 82.2 18 0.00039 31.6 10.7 97 28-127 3-110 (236)
137 cd06438 EpsO_like EpsO protein 82.2 29 0.00062 29.1 12.5 97 28-132 2-111 (183)
138 cd04196 GT_2_like_d Subfamily 82.2 19 0.00042 30.6 10.6 96 28-125 3-103 (214)
139 TIGR01556 rhamnosyltran L-rham 81.6 20 0.00044 32.5 11.1 96 35-135 8-107 (281)
140 cd04185 GT_2_like_b Subfamily 81.6 26 0.00057 29.7 11.2 96 29-127 3-105 (202)
141 TIGR03469 HonB hopene-associat 81.0 39 0.00084 32.5 13.2 106 28-133 45-165 (384)
142 cd06434 GT2_HAS Hyaluronan syn 80.6 37 0.0008 29.5 12.1 103 28-136 5-110 (235)
143 cd02526 GT2_RfbF_like RfbF is 79.1 36 0.00077 29.6 11.5 87 31-123 6-97 (237)
144 cd06421 CESA_CelA_like CESA_Ce 78.7 43 0.00093 29.0 13.2 105 28-136 6-118 (234)
145 cd06420 GT2_Chondriotin_Pol_N 77.6 34 0.00073 28.3 10.4 97 28-126 2-104 (182)
146 PF01983 CofC: Guanylyl transf 76.8 1.9 4E-05 38.2 2.3 108 3-127 1-114 (217)
147 cd02522 GT_2_like_a GT_2_like_ 75.2 33 0.00071 29.4 10.0 95 28-131 4-102 (221)
148 PF07302 AroM: AroM protein; 74.9 53 0.0012 29.1 10.9 98 5-115 91-190 (221)
149 PRK11498 bcsA cellulose syntha 72.5 62 0.0013 34.8 12.6 104 27-138 264-375 (852)
150 PRK13412 fkp bifunctional fuco 72.3 6.3 0.00014 42.5 5.3 106 105-241 154-269 (974)
151 PRK10714 undecaprenyl phosphat 71.2 53 0.0011 30.9 10.9 105 27-134 10-122 (325)
152 COG1215 Glycosyltransferases, 70.9 56 0.0012 31.6 11.5 102 27-130 58-166 (439)
153 TIGR03472 HpnI hopanoid biosyn 70.0 83 0.0018 30.1 12.2 100 27-127 45-152 (373)
154 KOG2638 UDP-glucose pyrophosph 69.6 1.1E+02 0.0025 29.7 15.4 129 5-138 106-273 (498)
155 PF10111 Glyco_tranf_2_2: Glyc 66.5 1E+02 0.0023 28.1 12.0 37 88-124 74-111 (281)
156 PRK13915 putative glucosyl-3-p 66.3 81 0.0018 29.4 10.9 106 28-136 36-152 (306)
157 cd06913 beta3GnTL1_like Beta 1 64.6 92 0.002 26.8 12.8 101 28-130 2-113 (219)
158 PF13641 Glyco_tranf_2_3: Glyc 64.5 32 0.0007 29.7 7.6 102 27-130 5-115 (228)
159 cd06436 GlcNAc-1-P_transferase 62.9 93 0.002 26.3 10.4 96 28-126 2-114 (191)
160 cd02520 Glucosylceramide_synth 62.3 96 0.0021 26.2 12.2 98 27-126 5-111 (196)
161 PRK10063 putative glycosyl tra 61.3 1.2E+02 0.0026 27.1 13.3 95 29-127 7-107 (248)
162 TIGR03030 CelA cellulose synth 61.0 1.6E+02 0.0034 31.1 13.0 103 28-136 136-262 (713)
163 PF00132 Hexapep: Bacterial tr 60.5 2.1 4.6E-05 25.6 -0.6 17 344-360 18-34 (36)
164 COG1216 Predicted glycosyltran 58.5 81 0.0018 29.1 9.4 105 28-135 9-118 (305)
165 PF04028 DUF374: Domain of unk 57.5 62 0.0014 23.2 6.5 57 51-112 11-67 (74)
166 PF05060 MGAT2: N-acetylglucos 53.7 36 0.00079 32.4 6.1 56 15-71 24-81 (356)
167 COG1920 Predicted nucleotidylt 52.4 67 0.0014 27.8 6.8 112 3-135 1-118 (210)
168 PRK00923 sirohydrochlorin coba 52.2 31 0.00067 27.3 4.8 23 33-55 44-66 (126)
169 PF13704 Glyco_tranf_2_4: Glyc 49.9 1E+02 0.0022 22.7 8.3 72 35-112 5-81 (97)
170 COG2179 Predicted hydrolase of 48.3 1.1E+02 0.0024 25.8 7.5 98 27-139 38-139 (175)
171 cd04191 Glucan_BSP_ModH Glucan 47.4 2.1E+02 0.0047 25.7 13.3 109 27-136 3-129 (254)
172 cd05824 LbH_M1P_guanylylT_C Ma 46.7 10 0.00023 27.2 1.1 10 347-356 19-28 (80)
173 PF14602 Hexapep_2: Hexapeptid 44.1 11 0.00025 22.5 0.8 17 346-362 18-34 (34)
174 cd05824 LbH_M1P_guanylylT_C Ma 43.7 16 0.00035 26.2 1.7 18 344-361 10-27 (80)
175 PF09837 DUF2064: Uncharacteri 42.3 1.1E+02 0.0024 24.2 6.4 83 40-128 1-87 (122)
176 TIGR00285 DNA-binding protein 41.9 39 0.00084 25.2 3.4 31 29-59 4-36 (87)
177 PRK10481 hypothetical protein; 41.4 2.6E+02 0.0056 24.9 11.5 86 35-126 117-204 (224)
178 COG2121 Uncharacterized protei 41.2 1.2E+02 0.0025 26.6 6.7 60 48-112 66-125 (214)
179 PF13562 NTP_transf_4: Sugar n 39.9 1.1E+02 0.0024 25.4 6.4 48 6-57 3-50 (156)
180 COG1044 LpxD UDP-3-O-[3-hydrox 37.1 20 0.00043 33.7 1.6 10 210-219 56-65 (338)
181 KOG1461 Translation initiation 35.0 19 0.00041 36.6 1.2 20 342-361 347-366 (673)
182 PF13712 Glyco_tranf_2_5: Glyc 32.7 1.4E+02 0.003 26.2 6.2 50 79-128 31-82 (217)
183 COG1044 LpxD UDP-3-O-[3-hydrox 32.1 29 0.00063 32.7 1.8 20 342-361 132-151 (338)
184 COG0381 WecB UDP-N-acetylgluco 32.1 3.7E+02 0.0079 26.0 9.2 101 26-128 5-115 (383)
185 COG1581 Ssh10b Archaeal DNA-bi 31.6 1.4E+02 0.0029 22.2 4.8 34 26-59 4-39 (91)
186 PRK05782 bifunctional sirohydr 30.2 98 0.0021 29.3 5.0 52 2-56 5-71 (335)
187 PRK10092 maltose O-acetyltrans 29.8 31 0.00067 29.6 1.5 24 339-362 135-158 (183)
188 PRK10502 putative acyl transfe 29.1 32 0.00068 29.4 1.5 28 335-362 126-153 (182)
189 TIGR02990 ectoine_eutA ectoine 28.2 4.2E+02 0.009 23.7 8.5 86 36-125 107-203 (239)
190 COG0110 WbbJ Acetyltransferase 27.1 30 0.00065 29.3 1.0 28 335-362 126-153 (190)
191 COG0463 WcaA Glycosyltransfera 26.9 3.3E+02 0.0072 21.8 8.3 94 29-124 9-105 (291)
192 cd00208 LbetaH Left-handed par 25.9 40 0.00086 23.4 1.3 18 344-361 55-72 (78)
193 PRK09527 lacA galactoside O-ac 25.7 41 0.00088 29.4 1.6 26 337-362 135-160 (203)
194 cd03413 CbiK_C Anaerobic cobal 24.7 1.1E+02 0.0024 23.4 3.6 23 33-55 40-62 (103)
195 cd03357 LbH_MAT_GAT Maltose O- 24.4 40 0.00086 28.3 1.2 23 340-362 125-147 (169)
196 cd05825 LbH_wcaF_like wcaF-lik 24.2 48 0.001 25.3 1.6 24 339-362 62-85 (107)
197 PF02641 DUF190: Uncharacteriz 23.7 1.2E+02 0.0026 23.0 3.7 27 31-57 16-42 (101)
198 COG1105 FruK Fructose-1-phosph 23.5 6.2E+02 0.013 23.7 10.4 112 7-133 33-162 (310)
199 PRK09453 phosphodiesterase; Pr 23.0 3.6E+02 0.0078 22.5 7.0 51 85-135 7-68 (182)
200 PRK11557 putative DNA-binding 22.7 5.7E+02 0.012 23.0 10.9 93 37-138 118-210 (278)
201 cd03349 LbH_XAT Xenobiotic acy 22.1 52 0.0011 26.9 1.5 18 344-361 84-101 (145)
202 KOG1462 Translation initiation 21.8 37 0.0008 32.6 0.6 18 344-361 350-367 (433)
203 cd04190 Chitin_synth_C C-termi 21.6 5.5E+02 0.012 22.5 9.4 36 102-138 73-109 (244)
204 PRK05454 glucosyltransferase M 21.6 9.7E+02 0.021 25.3 12.9 109 27-136 128-254 (691)
205 cd02514 GT13_GLCNAC-TI GT13_GL 21.2 7.1E+02 0.015 23.6 11.3 90 28-122 5-117 (334)
206 COG1658 Small primase-like pro 21.0 1.7E+02 0.0036 23.6 4.0 67 4-74 10-80 (127)
207 cd04646 LbH_Dynactin_6 Dynacti 20.9 55 0.0012 27.3 1.4 17 345-361 95-111 (164)
208 PF14134 DUF4301: Domain of un 20.6 6.8E+02 0.015 25.2 8.9 97 22-119 164-299 (513)
209 PRK09677 putative lipopolysacc 20.4 58 0.0013 28.0 1.5 23 340-362 137-159 (192)
210 PF07959 Fucokinase: L-fucokin 20.1 86 0.0019 30.7 2.7 95 105-225 55-158 (414)
No 1
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-47 Score=343.64 Aligned_cols=295 Identities=32% Similarity=0.518 Sum_probs=227.9
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|+|||||+|||.||||..+ +...|||||||+|+|||+|+|++|.++|+++|+|++...+ .+.++.++.+.+.-++...
T Consensus 8 ~efqavV~a~~ggt~~p~~-~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e-~~~i~~al~~~~~l~~~~~ 85 (433)
T KOG1462|consen 8 SEFQAVVLAGGGGTRMPEV-TSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDE-KLDIESALGSNIDLKKRPD 85 (433)
T ss_pred HHhhhheeecCCceechhh-hhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHH-HHHHHHHHhcCCccccccc
Confidence 4689999999999999777 9999999999999999999999999999999999998533 3467777765332222211
Q ss_pred EEEc----CCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019 81 VATV----PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (362)
Q Consensus 81 i~~~----~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (362)
++.. .+..||+++|+.+...+..+||||++||+|++.++..+++.++..++...|++..... +...+|.+.+
T Consensus 86 ~v~ip~~~~~d~gtadsLr~Iy~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s----~~~~pgqk~k 161 (433)
T KOG1462|consen 86 YVEIPTDDNSDFGTADSLRYIYSKIKSEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALS----EVPIPGQKGK 161 (433)
T ss_pred EEEeecccccccCCHHHHhhhhhhhccCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccc----cccccCcccc
Confidence 2221 2358999999999999977799999999999999999999999988877777663221 1112333333
Q ss_pred CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhh
Q 018019 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236 (362)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d 236 (362)
. .+...++.++++++++.+.....+.++++.|++++||+||++++.++|.|+|+|+|++|+++ ++.++....||+.+
T Consensus 162 ~--k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d-~l~~~~sisSfk~~ 238 (433)
T KOG1462|consen 162 K--KQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVID-LLSEKESISSFKAD 238 (433)
T ss_pred c--ccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHH-HHhcCCcceeeccc
Confidence 2 35668899999998888877777889999999999999999999999999999999999996 55777789999999
Q ss_pred hhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCc-ccccccCCCCCCCCCCceeeEEEEEecCCceEEE
Q 018019 237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS-FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVR 315 (362)
Q Consensus 237 ~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~r 315 (362)
|+|+|+++|+++........+ ..|. +|. ++.+ +...+.++.|||+|..+.++-|.|
T Consensus 239 f~P~lvkkQ~q~~~~~~~~~~--------------~~l~---t~~~~~~d------~~~~~~d~ik~y~~~~p~e~~~~r 295 (433)
T KOG1462|consen 239 FLPYLVKKQFQKNPPLKKNET--------------SILP---TPNLNNPD------GIHSPDDRIKCYAYILPTESLFVR 295 (433)
T ss_pred ccchhhhhhhhcCCCcccccc--------------cccC---CccccCcc------cccCcccceeeeEEEccCccceEE
Confidence 999999999976433211111 0000 111 1111 111122469999999998889999
Q ss_pred eCCHHHHHHHhH
Q 018019 316 LNSIQAFMDINR 327 (362)
Q Consensus 316 in~~~~Y~~~n~ 327 (362)
+||+.+|+++||
T Consensus 296 aNtL~~y~eiN~ 307 (433)
T KOG1462|consen 296 ANTLLSYMEINR 307 (433)
T ss_pred ecchHHHHhhhH
Confidence 999999999995
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=8.2e-40 Score=291.42 Aligned_cols=231 Identities=23% Similarity=0.432 Sum_probs=189.5
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i 81 (362)
.|+|+||.||.||||+|| |..+|||++||+++|||+|++++|.++|+++|+++++++. +++..|+...+..++++++
T Consensus 9 ~vkaiILvGG~GTRLrPL-T~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s--~sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 9 SVKAIILVGGYGTRLRPL-TLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNS--ESLNRHLSKAYGKELGVEI 85 (371)
T ss_pred ceeEEEEecCCCceeece-eccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCc--HHHHHHHHHHhhhccceEE
Confidence 478999999999999999 9999999999999999999999999999999999999874 4577777665666678877
Q ss_pred EE--cCCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019 82 AT--VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (362)
Q Consensus 82 ~~--~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (362)
.. +.++.|+++.+..+++++- +.+|+|++||+++..++.+|++.|+++++++|++++++.
T Consensus 86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd--------------- 150 (371)
T KOG1322|consen 86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD--------------- 150 (371)
T ss_pred EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc---------------
Confidence 65 4556666666666665553 337999999999999999999999999999999998764
Q ss_pred CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhh
Q 018019 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236 (362)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d 236 (362)
++++||++.+|+++.++..|. ||+. ...++.+|+|+|+|++++|+.++. . -.|+..+
T Consensus 151 --epSkyGvv~~d~~~grV~~F~-----EKPk-------------d~vsnkinaGiYi~~~~vL~ri~~-~--ptSiekE 207 (371)
T KOG1322|consen 151 --EPSKYGVVVIDEDTGRVIRFV-----EKPK-------------DLVSNKINAGIYILNPEVLDRILL-R--PTSIEKE 207 (371)
T ss_pred --CccccceEEEecCCCceeEeh-----hCch-------------hhhhccccceEEEECHHHHhHhhh-c--ccchhhh
Confidence 378899999999444456776 4543 234678899999999999998863 2 3669999
Q ss_pred hhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEe
Q 018019 237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL 316 (362)
Q Consensus 237 ~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri 316 (362)
++|.+++. .+.|||.+ +|||..|
T Consensus 208 ifP~~a~~-------------------------------------------------------~~l~a~~l--~gfWmDI 230 (371)
T KOG1322|consen 208 IFPAMAEE-------------------------------------------------------HQLYAFDL--PGFWMDI 230 (371)
T ss_pred hhhhhhhc-------------------------------------------------------CceEEEec--Cchhhhc
Confidence 99987643 34589999 8999999
Q ss_pred CCHHHHHHHhHHHh
Q 018019 317 NSIQAFMDINRDVI 330 (362)
Q Consensus 317 n~~~~Y~~~n~~~l 330 (362)
.++++|++.=.-.+
T Consensus 231 Gqpkdf~~g~~~Yl 244 (371)
T KOG1322|consen 231 GQPKDFLTGFSFYL 244 (371)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999943333
No 3
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=306.76 Aligned_cols=238 Identities=22% Similarity=0.360 Sum_probs=197.3
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHh---hhcCC-
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA---AYVDR- 76 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~---~~~~~- 76 (362)
++.|+|||||.|+||.|| |..|+||.+||||| +||||+|++|.++|+++|.|++.++.+ ++.+|++. |.+++
T Consensus 5 ~~laiILaGg~G~rL~~L-T~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~--SL~~Hi~~G~~w~l~~~ 81 (393)
T COG0448 5 NVLAIILAGGRGSRLSPL-TKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSH--SLNDHIGRGWPWDLDRK 81 (393)
T ss_pred ceEEEEEcCCCCCccchh-hhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchh--HHHHHhhCCCccccccc
Confidence 467999999999999999 99999999999999 999999999999999999999998864 89999985 43433
Q ss_pred -cceEEEEc----C---CCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 018019 77 -LHVEVATV----P---EDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (362)
Q Consensus 77 -~~i~i~~~----~---~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~ 145 (362)
.++.++.. . ...||++|+++.+..+. .+++++++||+|+++|+.++++.|++++|++|+++.+++..
T Consensus 82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~-- 159 (393)
T COG0448 82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPRE-- 159 (393)
T ss_pred cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChH--
Confidence 24555432 1 23799999999877664 47899999999999999999999999999999999988742
Q ss_pred cccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
+.++||++.+|+++++ ..+.+++..+. ....++++|+|+|++++|..++.
T Consensus 160 -------------eas~fGim~~D~~~~i-~~F~eKp~~~~----------------~~~~laSMgiYIf~~~~L~~~L~ 209 (393)
T COG0448 160 -------------EASRFGVMNVDENGRI-IEFVEKPADGP----------------PSNSLASMGIYIFNTDLLKELLE 209 (393)
T ss_pred -------------hhhhcCceEECCCCCE-EeeeeccCcCC----------------cccceeeeeeEEEcHHHHHHHHH
Confidence 2678899999999986 45664332100 12238999999999999999986
Q ss_pred cC----cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceee
Q 018019 226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301 (362)
Q Consensus 226 ~~----~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (362)
+. ....+|.+|+||.++... .
T Consensus 210 ~~~~~~~~~~DfgkdiIp~~~~~~-------------------------------------------------------~ 234 (393)
T COG0448 210 EDAKDPNSSHDFGKDIIPKLLERG-------------------------------------------------------K 234 (393)
T ss_pred HHhcccCccccchHHHHHHHHhcC-------------------------------------------------------C
Confidence 42 346788899999977442 2
Q ss_pred EEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 018019 302 CCVYIASNSKYCVRLNSIQAFMDINRDVIG 331 (362)
Q Consensus 302 ~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~ 331 (362)
++||.+ +|||..|.|+.+||++|||+|+
T Consensus 235 v~AY~f--~gYw~dVgTi~syy~aNmdLl~ 262 (393)
T COG0448 235 VYAYEF--SGYWRDVGTIDSYYEANMDLLS 262 (393)
T ss_pred EEEEec--cchhhhcccHHHHHHhhHHhcC
Confidence 699999 8899999999999999999997
No 4
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-38 Score=296.61 Aligned_cols=236 Identities=23% Similarity=0.455 Sum_probs=194.6
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i 81 (362)
.|+|||||||+||||+|| |..+||||+||+|||||+|+|++|..+|+++|+|++++. .+++.+++.+.......+.+
T Consensus 1 ~mkavILagG~GtRLrPl-T~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~--~~~i~~~~~d~~~~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGGYGTRLRPL-TDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYL--GEQIEEYFGDGEGLGVRITY 77 (358)
T ss_pred CceEEEEeCCcccccccc-ccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccc--hHHHHHHHhcccccCCceEE
Confidence 379999999999999999 999999999999999999999999999999999999876 46888888763222356777
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCC
Q 018019 82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (362)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (362)
+.+..+.||+++|+.+.+++..++|++++||.+++.|+..+++.|+++++.+|++..... .+.
T Consensus 78 ~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~-----------------~~~ 140 (358)
T COG1208 78 VVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL-----------------DPS 140 (358)
T ss_pred EecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC-----------------CCC
Confidence 777788999999999999997689999999999999999999999999888888776543 145
Q ss_pred cceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhhhhHH
Q 018019 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYL 241 (362)
Q Consensus 162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~ip~l 241 (362)
.|+++..++++..+..+.+ |+.. . ...++++++|+|+|++++|+.+ .. ....++..+++|.|
T Consensus 141 ~~Gvv~~~~~~~~v~~f~e-----kp~~-~----------~~~~~~in~Giyi~~~~v~~~i-~~-~~~~~~~~~~~~~l 202 (358)
T COG1208 141 EFGVVETDDGDGRVVEFRE-----KPGP-E----------EPPSNLINAGIYIFDPEVFDYI-EK-GERFDFEEELLPAL 202 (358)
T ss_pred cCceEEecCCCceEEEEEe-----cCCC-C----------CCCCceEEeEEEEECHHHhhhc-cc-CCcccchhhHHHHH
Confidence 7898888855445567764 3310 0 2356899999999999999734 32 24566777999998
Q ss_pred HHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHH
Q 018019 242 VRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQA 321 (362)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~ 321 (362)
++.+. .+++|.+ +|||..|.++++
T Consensus 203 ~~~~~------------------------------------------------------~v~~~~~--~g~W~dig~p~d 226 (358)
T COG1208 203 AAKGE------------------------------------------------------DVYGYVF--EGYWLDIGTPED 226 (358)
T ss_pred HhCCC------------------------------------------------------cEEEEEe--CCeEEeCCCHHH
Confidence 86532 3588888 789999999999
Q ss_pred HHHHhHHHhh
Q 018019 322 FMDINRDVIG 331 (362)
Q Consensus 322 Y~~~n~~~l~ 331 (362)
|.++|..+++
T Consensus 227 ~~~a~~~~~~ 236 (358)
T COG1208 227 LLEANELLLR 236 (358)
T ss_pred HHHHHHHHHh
Confidence 9999999996
No 5
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.4e-36 Score=296.06 Aligned_cols=253 Identities=22% Similarity=0.352 Sum_probs=197.4
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-cCCc--
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRL-- 77 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~~~-- 77 (362)
+++|||||||.||||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++. .+.+.+|+.+.+ ....
T Consensus 3 ~~~AVILAaG~GtRL~PL-T~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~--~~~i~~~l~~~~~~~~~~~ 79 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPL-TKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFN--SASLNRHISQTYNFDGFSG 79 (429)
T ss_pred cEEEEEECCCCCCcchhh-hcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCC--HHHHHHHHhcCcCccccCC
Confidence 368999999999999999 99999999999999 9999999999999999999999975 358888887422 1111
Q ss_pred c-eEEEE--c--CC---CCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCc
Q 018019 78 H-VEVAT--V--PE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLS 146 (362)
Q Consensus 78 ~-i~i~~--~--~~---~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~ 146 (362)
+ +.+.. + .+ ..||+++++.+++++. .++|+|++||.+++.|+.++++.|++.++++|+++.+.+..
T Consensus 80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~--- 156 (429)
T PRK02862 80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEK--- 156 (429)
T ss_pred CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChh---
Confidence 2 22222 1 11 2799999999998885 26799999999999999999999999999999988654311
Q ss_pred ccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCccc--ccccccchHHHhhcCc-eeeecCceeceEEeeCHHHHHHH
Q 018019 147 EAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAEL--EKDTRIRKSILRAVGQ-MDIRADLMDAHMYAFNRSVLQEV 223 (362)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~--ek~~~i~~~~l~~~~~-~~~~~~l~~~giYi~s~~vl~~~ 223 (362)
.+..|+++.+|+++++ ..+.++++. .+.+.++.++|...+. .....+++++|+|+|++++|..+
T Consensus 157 ------------~~~~yG~i~~d~~g~V-~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~ 223 (429)
T PRK02862 157 ------------DASGFGLMKTDDDGRI-TEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDL 223 (429)
T ss_pred ------------hcccceEEEECCCCcE-EEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHH
Confidence 2557899999987765 566655432 1234566666655442 22345689999999999999877
Q ss_pred HhcCcccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEE
Q 018019 224 LDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 303 (362)
Q Consensus 224 ~~~~~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (362)
+++..++.++.+|+||++++. .+++
T Consensus 224 l~~~~~~~~~~~dil~~l~~~-------------------------------------------------------~~v~ 248 (429)
T PRK02862 224 LNKNPEYTDFGKEIIPEAIRD-------------------------------------------------------YKVQ 248 (429)
T ss_pred HHHCCChhhhHHHHHHHHhcc-------------------------------------------------------CcEE
Confidence 766545667888999987522 3468
Q ss_pred EEEecCCceEEEeCCHHHHHHHhHHHh
Q 018019 304 VYIASNSKYCVRLNSIQAFMDINRDVI 330 (362)
Q Consensus 304 ~~~~~~~~y~~rin~~~~Y~~~n~~~l 330 (362)
+|.+ +|||.+++|+.+|+++|++++
T Consensus 249 ~~~~--~g~w~digt~~~y~~an~~l~ 273 (429)
T PRK02862 249 SYLF--DGYWEDIGTIEAFYEANLALT 273 (429)
T ss_pred EEEe--CCEEEeCCCHHHHHHHHHHHH
Confidence 8877 789999999999999999999
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.8e-36 Score=292.45 Aligned_cols=245 Identities=22% Similarity=0.321 Sum_probs=186.3
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHh-hhcCCcce
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA-AYVDRLHV 79 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~-~~~~~~~i 79 (362)
+|+|||||||.||||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++. .+++.+|+.. |...+..+
T Consensus 5 ~~~avILAaG~GtRl~PL-T~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~ 81 (407)
T PRK00844 5 KVLAIVLAGGEGKRLMPL-TADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYK--SHSLDRHISQTWRLSGLLG 81 (407)
T ss_pred ceEEEEECCCCCCccchh-hcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHHhCcCccccCC
Confidence 389999999999999999 99999999999999 9999999999999999999999976 4588999864 32222222
Q ss_pred EEEEc----C-----CCCCHHHHHHHHHHhcCC---CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcc
Q 018019 80 EVATV----P-----EDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSE 147 (362)
Q Consensus 80 ~i~~~----~-----~~~gt~~al~~~~~~i~~---~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~ 147 (362)
.++.. . ...||++|++.+++++.+ ++|+|++||.+++.++.++++.|+++++++|+++...+..
T Consensus 82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~---- 157 (407)
T PRK00844 82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPRE---- 157 (407)
T ss_pred CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchH----
Confidence 23221 1 148999999999998853 3499999999999999999999999999999888754321
Q ss_pred cCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc-
Q 018019 148 AGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ- 226 (362)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~- 226 (362)
.+..|+++.+|++|++ ..+.+++...... + ....+.++++|+|+|++++|..+++.
T Consensus 158 -----------~~~~~Gvv~~d~~g~v-~~~~eKp~~~~~~--~---------~~~~~~~~~~Giyi~~~~~l~~~l~~~ 214 (407)
T PRK00844 158 -----------EASAFGVIEVDPDGRI-RGFLEKPADPPGL--P---------DDPDEALASMGNYVFTTDALVDALRRD 214 (407)
T ss_pred -----------HcccCCEEEECCCCCE-EEEEECCCCcccc--c---------CCCCCcEEEeEEEEEeHHHHHHHHHHh
Confidence 2567899999987764 5666432111000 0 01124789999999999998665553
Q ss_pred ---CcccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEE
Q 018019 227 ---KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 303 (362)
Q Consensus 227 ---~~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (362)
.....++..|++|.|++++ +++
T Consensus 215 ~~~~~~~~~~~~dii~~l~~~~-------------------------------------------------------~v~ 239 (407)
T PRK00844 215 AADEDSSHDMGGDIIPRLVERG-------------------------------------------------------RAY 239 (407)
T ss_pred hcCCcccccchhhHHHHHhccC-------------------------------------------------------eEE
Confidence 1234567789999988653 234
Q ss_pred EEEe----------cCCceEEEeCCHHHHHHHhHHHhh
Q 018019 304 VYIA----------SNSKYCVRLNSIQAFMDINRDVIG 331 (362)
Q Consensus 304 ~~~~----------~~~~y~~rin~~~~Y~~~n~~~l~ 331 (362)
+|.+ ..+|||.+|+++++|+++||++|+
T Consensus 240 ~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~ 277 (407)
T PRK00844 240 VYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLS 277 (407)
T ss_pred EEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhC
Confidence 4433 125899999999999999999996
No 7
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=7.6e-36 Score=291.63 Aligned_cols=256 Identities=19% Similarity=0.325 Sum_probs=192.5
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-cC----
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VD---- 75 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~---- 75 (362)
+|+|||||||+|+||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++.. +++.+|+++.+ .+
T Consensus 3 ~~~aIIlA~G~gtRl~Pl-T~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~--~~i~~~l~~~~~~~~~~~ 79 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPL-TKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNS--ASLNRHLSRAYNFGNGGN 79 (436)
T ss_pred ceEEEEEeCCCCCcchhh-hcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCH--HHHHHHHhccCCCCCCcc
Confidence 489999999999999999 99999999999997 99999999999999999999999763 58999997522 11
Q ss_pred --CcceEEEE--cC-----CCCCHHHHHHHHHHhcC------CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeee
Q 018019 76 --RLHVEVAT--VP-----EDVGTAGALRAIAHHLT------AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSV 140 (362)
Q Consensus 76 --~~~i~i~~--~~-----~~~gt~~al~~~~~~i~------~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~ 140 (362)
...+.+.. +. .+.||+++++.++.++. .++|+|++||.+++.|+.++++.|+++++++|+++.+.
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v 159 (436)
T PLN02241 80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPV 159 (436)
T ss_pred cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEec
Confidence 01133332 21 25899999998876653 36899999999999999999999999999999988765
Q ss_pred ccCCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCccccc--ccccchHHHhhcC-ceeeecCceeceEEeeCH
Q 018019 141 PVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVG-QMDIRADLMDAHMYAFNR 217 (362)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek--~~~i~~~~l~~~~-~~~~~~~l~~~giYi~s~ 217 (362)
+.. ++..|+++.+|+++++ ..+.+++.... ..+++.++|...+ .+....+++++|+|+|++
T Consensus 160 ~~~---------------~~~~ygvv~~d~~~~v-~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~ 223 (436)
T PLN02241 160 DES---------------RASDFGLMKIDDTGRI-IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKK 223 (436)
T ss_pred chh---------------hcCcceEEEECCCCCE-EEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEH
Confidence 421 2567899999887764 57765432211 1122322222111 122235799999999999
Q ss_pred HHHHHHHhcCc-ccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCC
Q 018019 218 SVLQEVLDQKD-KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPV 296 (362)
Q Consensus 218 ~vl~~~~~~~~-~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (362)
++|..++++.. ...++..|++|.+++++
T Consensus 224 ~~l~~ll~~~~~~~~~~~~dil~~l~~~g--------------------------------------------------- 252 (436)
T PLN02241 224 DVLLKLLRWRFPTANDFGSEIIPGAIKEG--------------------------------------------------- 252 (436)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHhhcC---------------------------------------------------
Confidence 99977765432 22355677888876432
Q ss_pred CceeeEEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 018019 297 RRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE 332 (362)
Q Consensus 297 ~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~~ 332 (362)
.++++|.+ +|||.+|+++.+|+++||++|..
T Consensus 253 ---~~v~~~~~--~gyw~dIg~~~~y~~a~~~~l~~ 283 (436)
T PLN02241 253 ---YNVQAYLF--DGYWEDIGTIKSFYEANLALTKQ 283 (436)
T ss_pred ---CeEEEEee--CCEEEECCCHHHHHHHHHHHhcC
Confidence 46788988 78999999999999999999963
No 8
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-35 Score=283.73 Aligned_cols=261 Identities=25% Similarity=0.415 Sum_probs=214.6
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHh--hhcCC-cce
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA--AYVDR-LHV 79 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~--~~~~~-~~i 79 (362)
+|||++|..+.+||.|+ |..+|++|||++|.|||+|+|++|..+|+.+|+|+|+.+ +.++.+|++. |+... +.+
T Consensus 25 LqAIllaDsf~trF~Pl-t~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~--~~qi~e~i~~sew~~~~~~~v 101 (673)
T KOG1461|consen 25 LQAILLADSFETRFRPL-TLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAH--AAQIIEYIEKSEWYLPMSFIV 101 (673)
T ss_pred eEEEEEeccchhccccc-ccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEeccc--HHHHHHHHhhccccccccceE
Confidence 69999999999999999 999999999999999999999999999999999999855 3589999974 54322 223
Q ss_pred EEEEcCCCCCHHHHHHHH-HHhcCCCcEEEEeCCcccCCChHHHHHHHHhc-----CCeEEEEEeeeccCCCcccCCCCC
Q 018019 80 EVATVPEDVGTAGALRAI-AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGSSGA 153 (362)
Q Consensus 80 ~i~~~~~~~gt~~al~~~-~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~-----~a~~t~l~~~~~~~~~~~~~~~~~ 153 (362)
..+..++....||++|.. .+.+..++|++++||++++.+|.+++++|+++ ++.|||++.+...
T Consensus 102 ~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st----------- 170 (673)
T KOG1461|consen 102 VTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESST----------- 170 (673)
T ss_pred EEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEecccc-----------
Confidence 333334568899999998 45566799999999999999999999999653 6789999876421
Q ss_pred ccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccc
Q 018019 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL 233 (362)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~ 233 (362)
+....-.++++|..+.+++++......+....++++++..++.+.++.++.+++|-|||+.++..| .+|++|+ .
T Consensus 171 ----~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF-~dNFDyq-~ 244 (673)
T KOG1461|consen 171 ----RETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLF-TDNFDYQ-T 244 (673)
T ss_pred ----ccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHh-hhcccce-e
Confidence 012344678899988888888642222335688999999999999999999999999999999766 6778999 8
Q ss_pred hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceE
Q 018019 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (362)
Q Consensus 234 ~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 313 (362)
+.||+..++..++. ..+||+|+.+...|+
T Consensus 245 r~DfV~GvL~~dil---------------------------------------------------g~kI~~~~~~~~~yA 273 (673)
T KOG1461|consen 245 RDDFVRGVLVDDIL---------------------------------------------------GYKIHVHVLSSIDYA 273 (673)
T ss_pred hhhhhhhhhhhhhc---------------------------------------------------CCeEEEEEcChhhhh
Confidence 88888877755442 279999999877799
Q ss_pred EEeCCHHHHHHHhHHHhhhhc
Q 018019 314 VRLNSIQAFMDINRDVIGEAN 334 (362)
Q Consensus 314 ~rin~~~~Y~~~n~~~l~~~~ 334 (362)
+||+++++|..+|+|+|++|.
T Consensus 274 ~rv~n~~syd~vSkDiI~RW~ 294 (673)
T KOG1461|consen 274 ARVENLRSYDLVSKDIIQRWT 294 (673)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999998763
No 9
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.3e-35 Score=287.14 Aligned_cols=245 Identities=20% Similarity=0.284 Sum_probs=186.0
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcc-hHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhc-CC--c
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRP-VLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR--L 77 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~p-lI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~--~ 77 (362)
+++|||||||.||||+|| |..+||||+||+|+| ||+|+|++|.++|+++|+|++++. .+.+.+|+.+.+. .+ .
T Consensus 15 ~~~aVILAaG~GtRl~pL-T~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~--~~~i~~~~~~~~~~~~~~~ 91 (425)
T PRK00725 15 DTLALILAGGRGSRLKEL-TDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYK--AHSLIRHIQRGWSFFREEL 91 (425)
T ss_pred ceEEEEECCCCCCcchhh-hCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCC--HHHHHHHHHhhhcccccCC
Confidence 588999999999999999 999999999999996 999999999999999999999976 3588888875221 11 1
Q ss_pred c--eEEEE-------cCCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 018019 78 H--VEVAT-------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (362)
Q Consensus 78 ~--i~i~~-------~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~ 145 (362)
. +.+.. ++...||++|++.+++++. +++|+|++||.+++.++.++++.|+++++++|+++.+.+..
T Consensus 92 ~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~-- 169 (425)
T PRK00725 92 GEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE-- 169 (425)
T ss_pred CCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh--
Confidence 1 22221 1224899999999999885 35799999999999999999999999999999988764321
Q ss_pred cccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
++..||++.+|+++++ ..+.+++.... ..+ ....+.++++|+|+|++++|..+++
T Consensus 170 -------------~~~~yG~v~~d~~~~V-~~~~EKp~~~~--~~~---------~~~~~~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 170 -------------EASAFGVMAVDENDRI-TAFVEKPANPP--AMP---------GDPDKSLASMGIYVFNADYLYELLE 224 (425)
T ss_pred -------------hcccceEEEECCCCCE-EEEEECCCCcc--ccc---------cCccceEEEeeEEEEeHHHHHHHHH
Confidence 2568899999987764 56664321110 000 0112478999999999999876654
Q ss_pred cC----cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceee
Q 018019 226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301 (362)
Q Consensus 226 ~~----~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (362)
+. ....++..|++|.+++++ +
T Consensus 225 ~~~~~~~~~~~~~~dii~~l~~~~-------------------------------------------------------~ 249 (425)
T PRK00725 225 EDAEDPNSSHDFGKDIIPKIVEEG-------------------------------------------------------K 249 (425)
T ss_pred HhhcCCCccchhhHHHHHHHhccC-------------------------------------------------------c
Confidence 31 123456678888887542 3
Q ss_pred EEEEEecC---------CceEEEeCCHHHHHHHhHHHhh
Q 018019 302 CCVYIASN---------SKYCVRLNSIQAFMDINRDVIG 331 (362)
Q Consensus 302 ~~~~~~~~---------~~y~~rin~~~~Y~~~n~~~l~ 331 (362)
+++|.+.+ +|||.+|+|+.+|+++||++|.
T Consensus 250 v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~ 288 (425)
T PRK00725 250 VYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLAS 288 (425)
T ss_pred EEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcC
Confidence 46665532 5899999999999999999985
No 10
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.6e-35 Score=283.83 Aligned_cols=237 Identities=22% Similarity=0.366 Sum_probs=185.5
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhh---hcCC-
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAA---YVDR- 76 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~---~~~~- 76 (362)
+|+|||||||+||||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++. .+.+.+|+++. -.+.
T Consensus 3 ~m~avILAaG~GtRl~pl-T~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~ 79 (380)
T PRK05293 3 EMLAMILAGGQGTRLGKL-TKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQ--PLELNNHIGIGSPWDLDRI 79 (380)
T ss_pred cEEEEEECCCCCcccchh-hcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCC--HHHHHHHHhCCCcccccCC
Confidence 399999999999999999 99999999999999 9999999999999999999999976 45888888642 1111
Q ss_pred -cceEEE--E--cCC---CCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 018019 77 -LHVEVA--T--VPE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL 145 (362)
Q Consensus 77 -~~i~i~--~--~~~---~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~ 145 (362)
.++.+. . +.+ ..||+++++.+++++. .++|+|++||.+++.++.++++.|+++++++|+++...+..
T Consensus 80 ~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~-- 157 (380)
T PRK05293 80 NGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWE-- 157 (380)
T ss_pred CCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchh--
Confidence 123332 2 222 3899999999999885 25799999999999999999999999889988887654321
Q ss_pred cccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
++..|+++.+|+++++ ..+.+ |+. ...+++.++|+|+|++++|..+++
T Consensus 158 -------------~~~~yG~v~~d~~g~V-~~~~e-----Kp~-------------~~~~~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 158 -------------EASRFGIMNTDENMRI-VEFEE-----KPK-------------NPKSNLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred -------------hccccCEEEECCCCcE-EEEEe-----CCC-------------CCCcceeeeEEEEEcHHHHHHHHH
Confidence 2567899999877764 56653 321 112478899999999999977765
Q ss_pred cC----cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceee
Q 018019 226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301 (362)
Q Consensus 226 ~~----~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (362)
+. ....++..|+++.+++++ .+
T Consensus 206 ~~~~~~~~~~~~~~d~i~~l~~~~------------------------------------------------------~~ 231 (380)
T PRK05293 206 EDEKNPNSSHDFGKNVIPLYLEEG------------------------------------------------------EK 231 (380)
T ss_pred HHhhcCCchhhhHHHHHHHHhhcC------------------------------------------------------Ce
Confidence 32 123455578888877442 35
Q ss_pred EEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 018019 302 CCVYIASNSKYCVRLNSIQAFMDINRDVIG 331 (362)
Q Consensus 302 ~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~ 331 (362)
+++|.. +|||..++++.+|+++|++++.
T Consensus 232 v~~~~~--~g~w~digt~~~~~~a~~~~l~ 259 (380)
T PRK05293 232 LYAYPF--KGYWKDVGTIESLWEANMELLR 259 (380)
T ss_pred EEEEEe--CCEEEeCCCHHHHHHHHHHHcC
Confidence 688877 7899999999999999999986
No 11
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=2.9e-34 Score=262.06 Aligned_cols=231 Identities=24% Similarity=0.379 Sum_probs=179.5
Q ss_pred EEEEeCC--CCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHh-CCCCeEEEEccCcchHHHHHHHHHhhhc-CCcceE
Q 018019 5 VVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYV-DRLHVE 80 (362)
Q Consensus 5 avIlA~G--~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~~~i~ 80 (362)
||||||| +||||+|+ |..+||||+||+|||||+|+|++|.+ +|+++|+|++++. .+.+.+|+++... ....+.
T Consensus 1 ~iIla~G~~~GtRl~pl-t~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~--~~~i~~~l~~~~~~~~~~i~ 77 (257)
T cd06428 1 AVILVGGPQKGTRFRPL-SLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYP--ESVFSDFISDAQQEFNVPIR 77 (257)
T ss_pred CEEEccCCCCCcccCCc-cCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCC--HHHHHHHHHhcccccCceEE
Confidence 6999999 89999999 99999999999999999999999999 6999999999875 3578888875311 112344
Q ss_pred EEEcCCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCC
Q 018019 81 VATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (362)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~ 157 (362)
++.+.+..||+++++.+.+++. .++|+|++||++++.++..+++.|+++++++|+++.+.+..
T Consensus 78 ~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~-------------- 143 (257)
T cd06428 78 YLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASRE-------------- 143 (257)
T ss_pred EecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcccc--------------
Confidence 4445567999999999998874 36799999999999999999999999999999888764311
Q ss_pred CCCCcceEEEEc-CCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcC---------
Q 018019 158 KKPGRYNIIGMD-PTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK--------- 227 (362)
Q Consensus 158 ~~~~~~~~v~~d-~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~--------- 227 (362)
.+..|+++.+| ++++ +..+.+ |+. ...++++++|+|+|++++|..+.+..
T Consensus 144 -~~~~yg~v~~d~~~g~-v~~~~E-----kp~-------------~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~ 203 (257)
T cd06428 144 -QASNYGCIVEDPSTGE-VLHYVE-----KPE-------------TFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQL 203 (257)
T ss_pred -ccccccEEEEeCCCCe-EEEEEe-----CCC-------------CcccceEEEEEEEECHHHHHHHhhhcccccccccc
Confidence 25678999988 5565 467764 321 12347899999999999996654311
Q ss_pred ---------cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCc
Q 018019 228 ---------DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR 298 (362)
Q Consensus 228 ---------~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (362)
..+.++..|+++.++++
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~l~~~------------------------------------------------------ 229 (257)
T cd06428 204 GDDNNREGRAEVIRLEQDVLTPLAGS------------------------------------------------------ 229 (257)
T ss_pred ccccccccccceeeehhhhhhHHhcc------------------------------------------------------
Confidence 12234445677766532
Q ss_pred eeeEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 018019 299 THKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (362)
Q Consensus 299 ~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~ 329 (362)
.++++|++ +|||..|.|+.+|+++|+.+
T Consensus 230 -~~v~~~~~--~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 230 -GKLYVYKT--DDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred -CCEEEecC--CCeeecCCCHHHHHhHhhcC
Confidence 35688888 89999999999999999864
No 12
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=6.4e-34 Score=256.09 Aligned_cols=228 Identities=21% Similarity=0.401 Sum_probs=184.8
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
|++||||||.|+||+|+ |.++||+|+|++|+|||+|++++|.++|+++|+|++++.. +.+.+|+..+ ..+.++.++
T Consensus 1 m~~iIlAaG~g~R~~~l-t~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~--~~~~~~l~~~-~~~~~~~i~ 76 (233)
T cd06425 1 MKALILVGGYGTRLRPL-TLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRP--EDMVPFLKEY-EKKLGIKIT 76 (233)
T ss_pred CcEEEecCCCccccCcc-ccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCH--HHHHHHHhcc-cccCCeEEE
Confidence 68999999999999999 9999999999999999999999999999999999999763 4788888754 223455555
Q ss_pred E--cCCCCCHHHHHHHHHHhcCC--CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019 83 T--VPEDVGTAGALRAIAHHLTA--KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (362)
Q Consensus 83 ~--~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (362)
. +.+..|++++++.+.+++.. ++++|++||++++.++.++++.|+++++++|+++.+.+
T Consensus 77 ~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 139 (233)
T cd06425 77 FSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE----------------- 139 (233)
T ss_pred eccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC-----------------
Confidence 4 45578999999999998864 67999999999999999999999999999999887542
Q ss_pred CCCcceEEEEcC-CCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhh
Q 018019 159 KPGRYNIIGMDP-TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDV 237 (362)
Q Consensus 159 ~~~~~~~v~~d~-~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~ 237 (362)
.+..|+++.+|+ +++ +..+.+ |+. ...++++++|+|+|++++|..+.+ ...++..|+
T Consensus 140 ~~~~~g~v~~d~~~~~-v~~~~e-----kp~-------------~~~~~~~~~Giyi~~~~~l~~l~~---~~~~~~~~~ 197 (233)
T cd06425 140 DPSKYGVVVHDENTGR-IERFVE-----KPK-------------VFVGNKINAGIYILNPSVLDRIPL---RPTSIEKEI 197 (233)
T ss_pred CccccCeEEEcCCCCE-EEEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHHhccc---Ccccchhhh
Confidence 145789999987 565 456653 321 112578999999999999976533 234566788
Q ss_pred hhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeC
Q 018019 238 LPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLN 317 (362)
Q Consensus 238 ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin 317 (362)
++.++++ .++++|.+ +|||..|.
T Consensus 198 ~~~l~~~-------------------------------------------------------~~v~~~~~--~g~w~dig 220 (233)
T cd06425 198 FPKMASE-------------------------------------------------------GQLYAYEL--PGFWMDIG 220 (233)
T ss_pred HHHHHhc-------------------------------------------------------CCEEEEee--CCEEEcCC
Confidence 9988753 24688888 78999999
Q ss_pred CHHHHHHHhHHHh
Q 018019 318 SIQAFMDINRDVI 330 (362)
Q Consensus 318 ~~~~Y~~~n~~~l 330 (362)
|+.+|+++|+.+|
T Consensus 221 t~~~~~~a~~~~l 233 (233)
T cd06425 221 QPKDFLKGMSLYL 233 (233)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998765
No 13
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=1.4e-34 Score=256.83 Aligned_cols=211 Identities=39% Similarity=0.653 Sum_probs=171.9
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-cCCcceE-
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRLHVE- 80 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~~~~i~- 80 (362)
|+|||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++|+|++++.. .+.+++++.... ..+....
T Consensus 1 ~~aVILAgG~g~R~~pl-t~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~-~~~i~~~l~~~~~~~~~~~~~ 78 (214)
T cd04198 1 FQAVILAGGGGSRLYPL-TDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEE-QAEISTYLRSFPLNLKQKLDE 78 (214)
T ss_pred CEEEEEeCCCCCcCCcc-ccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHH-HHHHHHHHHhcccccCcceeE
Confidence 68999999999999999 9999999999999999999999999999999999998543 245677776431 1111222
Q ss_pred -EEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019 81 -VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (362)
Q Consensus 81 -i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (362)
+.......|++++++.+.+.+ .++|+|++||++++.++..+++.|+++++.+|+++.+....+.. .+++++.+.
T Consensus 79 ~~~~~~~~~gt~~al~~~~~~i-~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~----~~~~~~~~~ 153 (214)
T cd04198 79 VTIVLDEDMGTADSLRHIRKKI-KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQ----KGGKGKSKK 153 (214)
T ss_pred EEecCCCCcChHHHHHHHHhhc-CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccc----cCCcccccC
Confidence 222355799999999999887 57899999999999999999999999999999998875532111 111223344
Q ss_pred CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHH
Q 018019 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (362)
Q Consensus 160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl 220 (362)
...+.++++|+++++++++.+..+.++...++++++++||++.+++++.|+|||+|++|+|
T Consensus 154 ~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 154 ADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 5678899999988888898876677778889999999999999999999999999999975
No 14
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=3.2e-34 Score=260.21 Aligned_cols=236 Identities=28% Similarity=0.557 Sum_probs=183.5
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
+|||||||+||||+|+ |..+||||+|++|+ |||+|+|++|.++|++++++++.... .+.+.+++++.......+.++
T Consensus 1 kavIla~G~GtRl~pl-t~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~-~~~i~~~~~~~~~~~~~i~~i 78 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPL-TDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYK-EEQIEEHLGSGYKFGVKIEYI 78 (248)
T ss_dssp EEEEEEESCCGGGTTT-TTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTT-HHHHHHHHTTSGGGTEEEEEE
T ss_pred CEEEECCCCCccCchh-hhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecc-cccccccccccccccccceee
Confidence 6999999999999999 99999999999999 99999999999999999666655332 357888887642112347777
Q ss_pred EcCCCCCHHHHHHHHHHhcCCCc----EEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019 83 TVPEDVGTAGALRAIAHHLTAKD----VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~~~----~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (362)
.++...||+++|+.+.+.+..++ |+|++||++++.++.++++.|+++++++++++...+..
T Consensus 79 ~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------- 143 (248)
T PF00483_consen 79 VQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE--------------- 143 (248)
T ss_dssp EESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS---------------
T ss_pred ecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccccccccccccccc---------------
Confidence 78888999999999999887554 99999999999999999999999988543333333211
Q ss_pred CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeee-cCceeceEEeeCHHHHHHHHh---cCcccccch
Q 018019 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIR-ADLMDAHMYAFNRSVLQEVLD---QKDKFQSLK 234 (362)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~-~~l~~~giYi~s~~vl~~~~~---~~~~~~s~~ 234 (362)
.++.||++.+|+++++ ..+.+ |+- ... +.++++|+|+|++++|..+++ +......+.
T Consensus 144 ~~~~~g~v~~d~~~~V-~~~~E-----KP~-------------~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l 204 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGRV-IRIVE-----KPD-------------NPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFL 204 (248)
T ss_dssp GGGGSEEEEEETTSEE-EEEEE-----SCS-------------SHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHH
T ss_pred ccccceeeeeccceeE-EEEec-----cCc-------------ccccceeccCceEEEcchHHHHHhhhhhccchhhhHH
Confidence 2678999999988865 56664 432 111 579999999999999987743 333344556
Q ss_pred hhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCc--e
Q 018019 235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK--Y 312 (362)
Q Consensus 235 ~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--y 312 (362)
.|+++.++++. ....+|.. +| |
T Consensus 205 ~d~i~~~~~~~------------------------------------------------------~~~~~~~~--~~~~~ 228 (248)
T PF00483_consen 205 TDAIPKLLEQG------------------------------------------------------KKVYAFIF--EGNAY 228 (248)
T ss_dssp HHHHHHHHHTT------------------------------------------------------CEEEEEEH--SSEE-
T ss_pred HHHHHHHHHcC------------------------------------------------------CceEEEEe--cCCeE
Confidence 78888877653 23466666 55 8
Q ss_pred EEEeCCHHHHHHHhHHHhh
Q 018019 313 CVRLNSIQAFMDINRDVIG 331 (362)
Q Consensus 313 ~~rin~~~~Y~~~n~~~l~ 331 (362)
|..|.|+.+|+++|+++++
T Consensus 229 w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 229 WIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EEETSSHHHHHHHHHHHHS
T ss_pred EEECCCHHHHHHHHHHHhc
Confidence 9999999999999999985
No 15
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=2.3e-33 Score=259.52 Aligned_cols=234 Identities=15% Similarity=0.319 Sum_probs=178.2
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh--------
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-------- 73 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-------- 73 (362)
+|+|||||||.||||+|+ |..+||||+||+|||||+|+|++|.++|+++|+|++++. .+.+.+|+...+
T Consensus 3 ~mkavILAaG~GTRL~Pl-T~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~--~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred ceEEEEECCCCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCC--hHHHHHHHhchHHHHHHHHH
Confidence 589999999999999999 999999999999999999999999999999999999975 357888875321
Q ss_pred --------------cCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccC--------CChHHHHHHHHhcCC
Q 018019 74 --------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA 131 (362)
Q Consensus 74 --------------~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--------~~l~~~l~~h~~~~a 131 (362)
.....+.++.++++.|||+|++.+.+++.+++|+|++||.+++ .++.++++.|.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~ 159 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCC
Confidence 0012356677788899999999999999767899999998876 589999999987777
Q ss_pred eEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEc----CCCcE--EEEeecCcccccccccchHHHhhcCceeeec
Q 018019 132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQF--LLHIATGAELEKDTRIRKSILRAVGQMDIRA 205 (362)
Q Consensus 132 ~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~~--l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~ 205 (362)
.++++.. .+ . ++.+||++.++ ++|++ +..+. ||+.... ...+
T Consensus 160 ~~~~~~~-~~-~---------------~~~~yGvv~~~~~~d~~g~v~~I~~~~-----EKP~~~~----------~~~s 207 (297)
T TIGR01105 160 SQVLAKR-MP-G---------------DLSEYSVIQTKEPLDREGKVSRIVEFI-----EKPDQPQ----------TLDS 207 (297)
T ss_pred cEEEEEE-cC-C---------------CCccceEEEecccccCCCCeeeEeEEE-----ECCCCcc----------cCCc
Confidence 6644432 21 1 25689999984 44543 34554 3432100 1246
Q ss_pred CceeceEEeeCHHHHHHHHhcCcc----cccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCc
Q 018019 206 DLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS 281 (362)
Q Consensus 206 ~l~~~giYi~s~~vl~~~~~~~~~----~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (362)
+++++|+|+|++++|..+ +.... -.++ .|+++.|+++
T Consensus 208 ~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~~l-td~i~~l~~~------------------------------------- 248 (297)
T TIGR01105 208 DLMAVGRYVLSADIWAEL-ERTEPGAWGRIQL-TDAIAELAKK------------------------------------- 248 (297)
T ss_pred CEEEEEEEEECHHHHHHH-hcCCCCCCCeeeH-HHHHHHHHhc-------------------------------------
Confidence 899999999999999755 43211 0112 2777777642
Q ss_pred ccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 018019 282 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (362)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~ 329 (362)
-++++|.+ +|+|.-|.++.+|.++|.++
T Consensus 249 ------------------~~v~~~~~--~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 249 ------------------QSVDAMLM--TGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred ------------------CCEEEEEe--ccEEECCCCHHHHHHHHHHH
Confidence 24688888 78999999999999999886
No 16
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.1e-33 Score=245.15 Aligned_cols=234 Identities=22% Similarity=0.376 Sum_probs=187.4
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
|+|||||||.||||+|+ |...||+|+||.+||||+|+|+.|..+||++|.|++++++. ..+.+++.+-..-...+++.
T Consensus 1 mKgiILAgG~GTRL~Pl-T~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~-~~~~~llGdgs~~gv~itY~ 78 (286)
T COG1209 1 MKGVILAGGSGTRLRPL-TRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDK-PTFKELLGDGSDFGVDITYA 78 (286)
T ss_pred CCcEEecCcCccccccc-cccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCch-hhhhhhhcCccccCcceEEE
Confidence 68999999999999999 99999999999999999999999999999999999997653 46666665411012457778
Q ss_pred EcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCc
Q 018019 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (362)
.|+++.|-|+|+..+.+++.+++|+++.||.++..++.++++.+.+.+++++++..++. +|++
T Consensus 79 ~Q~~p~GlA~Av~~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~-----------------dP~r 141 (286)
T COG1209 79 VQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD-----------------DPSR 141 (286)
T ss_pred ecCCCCcHHHHHHHHHhhcCCCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC-----------------Cccc
Confidence 89999999999999999998899999999977766999999999988889999988865 3889
Q ss_pred ceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcC-cc-cccch-hhhhh
Q 018019 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-DK-FQSLK-QDVLP 239 (362)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~-~~-~~s~~-~d~ip 239 (362)
||++.+|++++ +..+. |||. .+.|+|+-+|+|+|++.+++.+ +.- +. -..++ .|.+.
T Consensus 142 fGV~e~d~~~~-v~~l~-----EKP~-------------~P~SNlAvtGlY~~d~~Vf~~~-~~ikPS~RGElEITd~i~ 201 (286)
T COG1209 142 YGVVEFDEDGK-VIGLE-----EKPK-------------EPKSNLAVTGLYFYDPSVFEAI-KQIKPSARGELEITDAID 201 (286)
T ss_pred ceEEEEcCCCc-EEEeE-----ECCC-------------CCCCceeEEEEEEeChHHHHHH-HcCCCCCCCceEehHHHH
Confidence 99999999885 46776 4554 4568999999999999999644 432 21 11111 35555
Q ss_pred HHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCH
Q 018019 240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI 319 (362)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~ 319 (362)
+++++. ...++... .|+|..+.+.
T Consensus 202 ~~i~~G------------------------------------------------------~~~~~~~~--~G~WlDtGt~ 225 (286)
T COG1209 202 LYIEKG------------------------------------------------------YLVVAILI--RGWWLDTGTP 225 (286)
T ss_pred HHHHcC------------------------------------------------------cEEEEEEc--cceEEecCCh
Confidence 555432 22244444 6799999999
Q ss_pred HHHHHHhHHHhh
Q 018019 320 QAFMDINRDVIG 331 (362)
Q Consensus 320 ~~Y~~~n~~~l~ 331 (362)
.+|.++|+-++.
T Consensus 226 ~slleA~~~i~~ 237 (286)
T COG1209 226 ESLLEANNFVRT 237 (286)
T ss_pred hhHHHHHHHHHH
Confidence 999999998886
No 17
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1.4e-33 Score=270.06 Aligned_cols=241 Identities=22% Similarity=0.356 Sum_probs=181.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhc-CC---cce
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR---LHV 79 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~---~~i 79 (362)
|||||||.||||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++.. +++.+|+.+.+. .+ ..+
T Consensus 1 aiILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPL-TKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKS--HSLNRHIQRGWDFDGFIDGFV 77 (361)
T ss_pred CEEeCCCCCCccchh-hhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccCh--HHHHHHHHhccCccCccCCCE
Confidence 699999999999999 99999999999999 89999999999999999999999763 478888874221 11 123
Q ss_pred EEEEc-------CCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccC
Q 018019 80 EVATV-------PEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAG 149 (362)
Q Consensus 80 ~i~~~-------~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~ 149 (362)
++... +...||+++++.+...+. .++|++++||++++.++.++++.|+++++++|+++...+..
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~------ 151 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRK------ 151 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChH------
Confidence 33211 124799999999988774 36799999999999999999999998888888887654311
Q ss_pred CCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcC--
Q 018019 150 SSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-- 227 (362)
Q Consensus 150 ~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~-- 227 (362)
++..|+++.+|+++++ ..+.+ |+.... +. ... ....++++|+|+|++++|..+++..
T Consensus 152 ---------~~~~~g~v~~d~~~~v-~~~~e-----kp~~~~-~~-~~~----~~~~~~~~Giyi~~~~~l~~~l~~~~~ 210 (361)
T TIGR02091 152 ---------EASRFGVMQVDEDGRI-VDFEE-----KPANPP-SI-PGM----PDFALASMGIYIFDKDVLKELLEEDAD 210 (361)
T ss_pred ---------hcccccEEEECCCCCE-EEEEE-----CCCCcc-cc-ccc----ccccEEeeeEEEEcHHHHHHHHHHHhh
Confidence 2567899999887764 56653 321100 00 000 0113789999999999986665531
Q ss_pred --cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEE
Q 018019 228 --DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY 305 (362)
Q Consensus 228 --~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
....++..|+++.|++++ +|++|
T Consensus 211 ~~~~~~~~~~d~l~~l~~~~-------------------------------------------------------~v~~~ 235 (361)
T TIGR02091 211 DPESSHDFGKDIIPRALEEG-------------------------------------------------------SVQAY 235 (361)
T ss_pred cCCcccccHHHHHHHHhhcC-------------------------------------------------------ceEEE
Confidence 123455678888877432 46888
Q ss_pred EecCCceEEEeCCHHHHHHHhHHHhhh
Q 018019 306 IASNSKYCVRLNSIQAFMDINRDVIGE 332 (362)
Q Consensus 306 ~~~~~~y~~rin~~~~Y~~~n~~~l~~ 332 (362)
.+ ++||..|+|+.+|+++|+++|..
T Consensus 236 ~~--~~~w~digt~~~~~~a~~~~l~~ 260 (361)
T TIGR02091 236 LF--SGYWRDVGTIDSFWEANMDLVSV 260 (361)
T ss_pred ee--CCEEEECCCHHHHHHHHHHHhCC
Confidence 88 68999999999999999999973
No 18
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=2.9e-33 Score=249.08 Aligned_cols=203 Identities=27% Similarity=0.454 Sum_probs=161.5
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCC-----c
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDR-----L 77 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~-----~ 77 (362)
++|||+|||.|+||+|| |..+||||+||+|+|||+|+|++|.++|+++|+|++++. .+.+.+|+++..... .
T Consensus 1 ~~aiIla~G~g~Rl~pl-t~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~--~~~i~~~l~~~~~~~~~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPL-TKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSH--SDQIKEYIEKSKWSKPKSSLM 77 (217)
T ss_pred CeEEEEcCCCccccccc-ccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCC--HHHHHHHHhhccccccccCcc
Confidence 68999999999999999 999999999999999999999999999999999999965 358999998632111 2
Q ss_pred ceEEEEcCCCCCHHHHHHHH--HHhcCCCcEEEEeCCcccCCChHHHHHHHHh-----cCCeEEEEEeeeccCCCcccCC
Q 018019 78 HVEVATVPEDVGTAGALRAI--AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRR-----HDAVVTAMICSVPVSGLSEAGS 150 (362)
Q Consensus 78 ~i~i~~~~~~~gt~~al~~~--~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~-----~~a~~t~l~~~~~~~~~~~~~~ 150 (362)
.+.++.+++..|++++++.. ...+ .++|++++||++++.++.++++.|++ +++++|+++.+.+..+
T Consensus 78 ~i~~~~~~~~~~~~~al~~~~~~~~~-~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~------ 150 (217)
T cd04197 78 IVIIIMSEDCRSLGDALRDLDAKGLI-RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPH------ 150 (217)
T ss_pred eEEEEeCCCcCccchHHHHHhhcccc-CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCcc------
Confidence 35555556678899998765 3334 57899999999999999999999987 4889999887654211
Q ss_pred CCCccCCCCCCcceEEEEcCCCcEEEEeecCccccc--ccccchHHHhhcCceeeecCceeceEEeeCHHHH
Q 018019 151 SGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (362)
Q Consensus 151 ~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek--~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl 220 (362)
+.+....++++.+|+++.+++.+.+++...+ ...++++++.+++.+.++++++|+|+|+|++++|
T Consensus 151 -----~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 151 -----RTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred -----ccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 0011234678888877334568877654322 3468999999999999999999999999999975
No 19
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.9e-32 Score=260.11 Aligned_cols=233 Identities=20% Similarity=0.316 Sum_probs=180.9
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (362)
Q Consensus 4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~ 83 (362)
+|||||||.|+||+|+ |..+||||+||+|+|||+|+|++|.++|+++|+|++++.. .+.+.+++.+.......+.++.
T Consensus 1 kaiIlAaG~gtRl~pl-t~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 78 (353)
T TIGR01208 1 KALILAAGKGTRLRPL-TFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVT-GEEIKEIVGEGERFGAKITYIV 78 (353)
T ss_pred CEEEECCcCcCccCcc-ccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCC-HHHHHHHHhcccccCceEEEEE
Confidence 5899999999999999 9999999999999999999999999999999999998732 3588888864211112344555
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcc
Q 018019 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY 163 (362)
Q Consensus 84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (362)
+....|++++++.+++++.+++|++++||.+++.++.++++.|+++++++|+++.+.. ++..|
T Consensus 79 ~~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~-----------------~~~~~ 141 (353)
T TIGR01208 79 QGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR-----------------DPTAF 141 (353)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC-----------------ChhhC
Confidence 5667999999999999887678999999999999999999999999999998876532 24568
Q ss_pred eEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc----ccccchhhhhh
Q 018019 164 NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLP 239 (362)
Q Consensus 164 ~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~----~~~s~~~d~ip 239 (362)
+++.++++++ +..+.+ |+. ...+++.++|+|+|++.+++.+ ++.. +..+ -.|+++
T Consensus 142 g~~~~~~~~~-v~~~~e-----kp~-------------~~~~~~~~~Giy~~~~~l~~~l-~~~~~~~~~e~~-l~d~l~ 200 (353)
T TIGR01208 142 GVAVLEDGKR-ILKLVE-----KPK-------------EPPSNLAVVGLYMFRPLIFEAI-KNIKPSWRGELE-ITDAIQ 200 (353)
T ss_pred eEEEEcCCCc-EEEEEE-----CCC-------------CCCccceEEEEEEECHHHHHHH-HhcCCCCCCcEE-HHHHHH
Confidence 8888865444 456653 321 1124788999999999877655 3211 1111 246666
Q ss_pred HHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCH
Q 018019 240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI 319 (362)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~ 319 (362)
.|++++ .++++|.+ +|||..|+|+
T Consensus 201 ~l~~~g------------------------------------------------------~~v~~~~~--~g~w~digt~ 224 (353)
T TIGR01208 201 WLIEKG------------------------------------------------------YKVGGSKV--TGWWKDTGKP 224 (353)
T ss_pred HHHHcC------------------------------------------------------CeEEEEEe--CcEEEeCCCH
Confidence 665432 45788888 7899999999
Q ss_pred HHHHHHhHHHhhh
Q 018019 320 QAFMDINRDVIGE 332 (362)
Q Consensus 320 ~~Y~~~n~~~l~~ 332 (362)
.+|+++|+.+|+.
T Consensus 225 ~dl~~a~~~ll~~ 237 (353)
T TIGR01208 225 EDLLDANRLILDE 237 (353)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999974
No 20
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=1.7e-33 Score=270.11 Aligned_cols=237 Identities=16% Similarity=0.269 Sum_probs=172.7
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
+|+|||||||+|+||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++.. .+++++|+.+.. .+++.
T Consensus 2 ~~~avila~g~gtRL~PL-T~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~-~~~I~~~l~~~~--~~~~~ 77 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPL-TKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE-RQSLFDHLGSGR--EWDLH 77 (369)
T ss_pred cEEEEEECCCCCcccccc-ccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCc-HHHHHHHHhCCC--CCCcc
Confidence 589999999999999999 99999999999999 99999999999999999999999753 137889886411 11211
Q ss_pred --------EEEcCC-CC--CHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCc
Q 018019 81 --------VATVPE-DV--GTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLS 146 (362)
Q Consensus 81 --------i~~~~~-~~--gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~ 146 (362)
++.++. .. |++++++.+++++. .++|+|++||++++.++.++++.|+++++++|+++.+.+..
T Consensus 78 ~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~--- 154 (369)
T TIGR02092 78 RKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPA--- 154 (369)
T ss_pred cccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHH---
Confidence 223333 22 56667888888774 36799999999999999999999999999999988764310
Q ss_pred ccCCCCCccCCCCCCcc-eEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 147 EAGSSGAKDKTKKPGRY-NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 147 ~~~~~~~~~~~~~~~~~-~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
.+..| +++..+++++ +..+.. +++. .....+++|+|+|++++|..+++
T Consensus 155 ------------~~~~~g~vv~~~~~g~-v~~~~~----~~~~--------------~~~~~~~~Giyi~~~~~l~~~l~ 203 (369)
T TIGR02092 155 ------------DASEYDTILRFDESGK-VKSIGQ----NLNP--------------EEEENISLDIYIVSTDLLIELLY 203 (369)
T ss_pred ------------HccccCcEEEEcCCCC-EEeccc----cCCC--------------CCcceeeeeEEEEEHHHHHHHHH
Confidence 13455 4556776664 344421 1110 01245689999999998866654
Q ss_pred cCc--ccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEE
Q 018019 226 QKD--KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 303 (362)
Q Consensus 226 ~~~--~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (362)
+.. .....-.|+++.+++. .+++
T Consensus 204 ~~~~~~~~~~~~d~i~~~~~~-------------------------------------------------------~~v~ 228 (369)
T TIGR02092 204 ECIQRGKLTSLEELIRENLKE-------------------------------------------------------LNIN 228 (369)
T ss_pred HHhhcCccccHHHHHHHHhcc-------------------------------------------------------CcEE
Confidence 321 1112233556655421 2458
Q ss_pred EEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 018019 304 VYIASNSKYCVRLNSIQAFMDINRDVIGEA 333 (362)
Q Consensus 304 ~~~~~~~~y~~rin~~~~Y~~~n~~~l~~~ 333 (362)
+|.. +|||..|+|+.+|.++|+++|+.+
T Consensus 229 ~~~~--~g~w~dIgt~~~l~~a~~~~l~~~ 256 (369)
T TIGR02092 229 AYEY--TGYLANINSVKSYYKANMDLLDPQ 256 (369)
T ss_pred EEec--CCceeEcCCHHHHHHHHHHHhCCc
Confidence 8877 789999999999999999999754
No 21
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=8.8e-32 Score=249.48 Aligned_cols=237 Identities=15% Similarity=0.281 Sum_probs=178.9
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHh-hhc------
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA-AYV------ 74 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~-~~~------ 74 (362)
+|+|||+|||.||||+|+ |..+||||+||+|||||+|++++|.++|+++|+|++++. .+.+.+|+.. |.+
T Consensus 3 ~mkavIlAaG~GtRl~Pl-T~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred ceEEEEECCcCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCC--hHHHHHHHhcchhHHHHHhh
Confidence 489999999999999999 999999999999999999999999999999999999875 3578888853 110
Q ss_pred ---------------CCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccC--------CChHHHHHHHHhcCC
Q 018019 75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA 131 (362)
Q Consensus 75 ---------------~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--------~~l~~~l~~h~~~~a 131 (362)
....+.++.++++.||++|++.+++++.+++|+|+.||.+++ .|+.++++.|.++++
T Consensus 80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~ 159 (297)
T PRK10122 80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGR 159 (297)
T ss_pred cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhCC
Confidence 012356677778899999999999999667899999998765 589999999988887
Q ss_pred eEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEc----CCCc--EEEEeecCcccccccccchHHHhhcCceeeec
Q 018019 132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQ--FLLHIATGAELEKDTRIRKSILRAVGQMDIRA 205 (362)
Q Consensus 132 ~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~--~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~ 205 (362)
+++++. ... . .+..||++.+| +++. .+..+.+ |+.... ...+
T Consensus 160 ~~~~~~-~~~-~---------------~~~~yGvv~~d~~~~~~g~v~~I~~~~E-----Kp~~~~----------~~~s 207 (297)
T PRK10122 160 SQVLAK-RMP-G---------------DLSEYSVIQTKEPLDREGKVSRIVEFIE-----KPDQPQ----------TLDS 207 (297)
T ss_pred cEEEEE-ECC-C---------------CCCCceEEEecCcccCCCCeeeEEEEEE-----CCCCcc----------cCCc
Confidence 755443 221 0 25688999986 3453 2445553 432100 1235
Q ss_pred CceeceEEeeCHHHHHHHHhcCc---ccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcc
Q 018019 206 DLMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF 282 (362)
Q Consensus 206 ~l~~~giYi~s~~vl~~~~~~~~---~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (362)
+++++|+|+|++++|..+.+... +...+ .|+++.+++.
T Consensus 208 ~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~l-td~i~~l~~~-------------------------------------- 248 (297)
T PRK10122 208 DLMAVGRYVLSADIWPELERTEPGAWGRIQL-TDAIAELAKK-------------------------------------- 248 (297)
T ss_pred cEEEEEEEEECHHHHHHHHhCCCCCCCeeeH-HHHHHHHHhC--------------------------------------
Confidence 78999999999999987744111 11112 3666666532
Q ss_pred cccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHH-hh
Q 018019 283 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-IG 331 (362)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~-l~ 331 (362)
.++++|.+ +|+|..|.++.+|.++|.++ |.
T Consensus 249 -----------------~~v~~~~~--~G~w~DiG~p~~~~~a~~~~~~~ 279 (297)
T PRK10122 249 -----------------QSVDAMLM--TGDSYDCGKKMGYMQAFVKYGLR 279 (297)
T ss_pred -----------------CCEEEEEe--CCEEEcCCCHHHHHHHHHHHHhc
Confidence 24688888 78999999999999999998 54
No 22
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=5.7e-32 Score=246.21 Aligned_cols=226 Identities=19% Similarity=0.328 Sum_probs=179.2
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcC--Cc----
Q 018019 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD--RL---- 77 (362)
Q Consensus 4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~--~~---- 77 (362)
+|||||||.|+||+|+ |..+||||+||+|||||+|+|++|.++|+++|+|++++.. +.+.+++.+.... .+
T Consensus 1 kavilaaG~gtRl~~~-t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~ 77 (254)
T TIGR02623 1 KAVILAGGLGTRISEE-THLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKG--YVIKEYFANYFLHMSDVTFHM 77 (254)
T ss_pred CEEEEcCccccccCcc-ccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCH--HHHHHHHHhhhhcccCeeEEe
Confidence 5899999999999999 9999999999999999999999999999999999999763 5788888653210 11
Q ss_pred ---------------ceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeecc
Q 018019 78 ---------------HVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142 (362)
Q Consensus 78 ---------------~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~ 142 (362)
.+.+..+.+..||+++++.+++++.+++|+|++||++++.++.++++.|.+.++++|+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~--- 154 (254)
T TIGR02623 78 ADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ--- 154 (254)
T ss_pred cccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec---
Confidence 12233334568999999999999866789999999999999999999999999999876542
Q ss_pred CCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHH
Q 018019 143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE 222 (362)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~ 222 (362)
++..||++.+|+ + .+..+. ||+. ..++++++|+|+|++++|.
T Consensus 155 ----------------~~~~yG~v~~d~-~-~V~~~~-----Ekp~--------------~~~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 155 ----------------PPGRFGALDLEG-E-QVTSFQ-----EKPL--------------GDGGWINGGFFVLNPSVLD- 196 (254)
T ss_pred ----------------CCCcccEEEECC-C-eEEEEE-----eCCC--------------CCCCeEEEEEEEEcHHHHh-
Confidence 145689998885 4 456776 3432 1136889999999999995
Q ss_pred HHhcCcccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeE
Q 018019 223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC 302 (362)
Q Consensus 223 ~~~~~~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (362)
+++.. ..++..|+++.++++ .++
T Consensus 197 ~l~~~--~~~~~~d~i~~l~~~-------------------------------------------------------~~v 219 (254)
T TIGR02623 197 LIDGD--ATVWEQEPLETLAQR-------------------------------------------------------GEL 219 (254)
T ss_pred hcccc--CchhhhhHHHHHHhC-------------------------------------------------------CCE
Confidence 54432 235677899888743 245
Q ss_pred EEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 018019 303 CVYIASNSKYCVRLNSIQAFMDINRDVIGE 332 (362)
Q Consensus 303 ~~~~~~~~~y~~rin~~~~Y~~~n~~~l~~ 332 (362)
++|.+ +||+..|+|+.+|.+++...-..
T Consensus 220 ~~~~~--~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 220 SAYEH--SGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred EEEeC--CCEEecCCchHHHHHHHHHHHcC
Confidence 88888 79999999999999998877653
No 23
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=6.9e-32 Score=243.91 Aligned_cols=231 Identities=21% Similarity=0.314 Sum_probs=174.0
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcc--eE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH--VE 80 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~--i~ 80 (362)
|+|||||||.|+||+|+ |..+||+|+||+|+|||+|+|++|.++|+++|+|++++.. .+.+.+|+.+. ..++ +.
T Consensus 1 m~~iIlAaG~gtRl~pl-t~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~~l~~~--~~~~~~i~ 76 (240)
T cd02538 1 MKGIILAGGSGTRLYPL-TKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPED-LPLFKELLGDG--SDLGIRIT 76 (240)
T ss_pred CeEEEEcCcCcccCCcc-ccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcch-HHHHHHHHhcc--cccCceEE
Confidence 58999999999999999 9999999999999999999999999999999999887543 35777888642 1233 43
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019 81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (362)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (362)
+..++...|++++++.+.+++..++++|++||. +.+.++.++++.|.++++++|+++.+.. +
T Consensus 77 ~~~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 139 (240)
T cd02538 77 YAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN-----------------D 139 (240)
T ss_pred EeeCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC-----------------c
Confidence 444455689999999999988767799999995 5577899999999888888888876542 1
Q ss_pred CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc--ccccc-hhh
Q 018019 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD--KFQSL-KQD 236 (362)
Q Consensus 160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~--~~~s~-~~d 236 (362)
+..|+++.+|++|++ ..+.+ |+. ...++++++|+|+|++++|+.+ ++.. +..++ -.|
T Consensus 140 ~~~~g~v~~d~~g~v-~~~~e-----kp~-------------~~~~~~~~~Giyi~~~~~l~~l-~~~~~~~~~~~~l~d 199 (240)
T cd02538 140 PERYGVVEFDENGRV-LSIEE-----KPK-------------KPKSNYAVTGLYFYDNDVFEIA-KQLKPSARGELEITD 199 (240)
T ss_pred hhcCceEEecCCCcE-EEEEE-----CCC-------------CCCCCeEEEEEEEECHHHHHHH-HhcCCCCCCeEEhHH
Confidence 457899999987764 56663 321 1224688999999999999644 4221 11111 237
Q ss_pred hhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEe
Q 018019 237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL 316 (362)
Q Consensus 237 ~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri 316 (362)
+++.++++. ++.+|.++.+|||..|
T Consensus 200 ~~~~l~~~g-------------------------------------------------------~~~~~~~~~~g~w~di 224 (240)
T cd02538 200 VNNEYLEKG-------------------------------------------------------KLSVELLGRGFAWLDT 224 (240)
T ss_pred HHHHHHHhC-------------------------------------------------------CeEEEEeCCCcEEEeC
Confidence 777776432 1234444325899999
Q ss_pred CCHHHHHHHhHHH
Q 018019 317 NSIQAFMDINRDV 329 (362)
Q Consensus 317 n~~~~Y~~~n~~~ 329 (362)
+|+.+|+++|+.+
T Consensus 225 gt~~~~~~a~~~~ 237 (240)
T cd02538 225 GTHESLLEASNFV 237 (240)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999854
No 24
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=9.3e-32 Score=248.19 Aligned_cols=234 Identities=18% Similarity=0.302 Sum_probs=178.8
Q ss_pred CC-ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 1 MD-FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 1 M~-~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|. |+|||||||.||||+|+ |..+||||+||+|||||+|+|++|..+|+++|+|++.+.. .+.+.+++++...-...+
T Consensus 1 m~~~kaIILAgG~GtRL~Pl-T~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~-~~~~~~~l~~g~~~g~~i 78 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPV-TMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGLNL 78 (292)
T ss_pred CCceEEEEECCCcccccCcc-cCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCc-hHHHHHHHcCccccCcee
Confidence 65 89999999999999999 9999999999999999999999999999999998876443 346778876421002345
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019 80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (362)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (362)
.++.++.+.|+++|+..+.+++.+++++++.||. +++.++.++++.|.++++++|+++..++
T Consensus 79 ~y~~q~~~~Gta~Al~~a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~----------------- 141 (292)
T PRK15480 79 QYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN----------------- 141 (292)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-----------------
Confidence 6677777899999999999998666788899994 5689999999999888888888876543
Q ss_pred CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcC-c---ccccch
Q 018019 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-D---KFQSLK 234 (362)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~-~---~~~s~~ 234 (362)
++.+||++.+|++|++ ..+. ||+. ...++++++|+|+|++++++.+ +.. + +-.++
T Consensus 142 ~p~~yGvv~~d~~g~v-~~i~-----EKP~-------------~p~s~~a~~GiY~~~~~v~~~~-~~~~~~~~ge~~i- 200 (292)
T PRK15480 142 DPERYGVVEFDQNGTA-ISLE-----EKPL-------------QPKSNYAVTGLYFYDNDVVEMA-KNLKPSARGELEI- 200 (292)
T ss_pred CcccCcEEEECCCCcE-EEEE-----ECCC-------------CCCCCEEEEEEEEEChHHHHHH-hhcCCCCCCeeEh-
Confidence 2678999999987765 4666 4432 1346899999999999998654 321 1 11123
Q ss_pred hhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCc-eE
Q 018019 235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK-YC 313 (362)
Q Consensus 235 ~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~ 313 (362)
.|+++.+++++. ...++.. +| +|
T Consensus 201 td~~~~~l~~g~------------------------------------------------------~~~~~~~--~g~~W 224 (292)
T PRK15480 201 TDINRIYMEQGR------------------------------------------------------LSVAMMG--RGYAW 224 (292)
T ss_pred HHHHHHHHhcCC------------------------------------------------------eEEEEec--CCcEE
Confidence 366666654321 1133333 56 59
Q ss_pred EEeCCHHHHHHHhHHHh
Q 018019 314 VRLNSIQAFMDINRDVI 330 (362)
Q Consensus 314 ~rin~~~~Y~~~n~~~l 330 (362)
.-++|+.+|.++|+.+-
T Consensus 225 ~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 225 LDTGTHQSLIEASNFIA 241 (292)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 99999999999998775
No 25
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=247.39 Aligned_cols=289 Identities=21% Similarity=0.367 Sum_probs=206.3
Q ss_pred CCceEEEEeCC--CCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHh-CCCCeEEEEccCcchHHHHHHHHHhhhcC-C
Q 018019 1 MDFQVVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVD-R 76 (362)
Q Consensus 1 M~~~avIlA~G--~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~~-~ 76 (362)
|.+.||||.|| +||||+|| +.+.||||.|++|+|||+|.++.+.+ .|..+|+++.-+.+ +.+.+++...... +
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPL-Sf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e--~~f~~fis~~~~e~~ 77 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPL-SFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEE--RVFTDFISAIQQEFK 77 (407)
T ss_pred CceEEEEEecCCCCCcccccc-ccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccc--hHHHHHHHHHHhhcc
Confidence 78999999999 69999999 99999999999999999999999977 58999999976653 3666776542111 2
Q ss_pred cceEEEEcCCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCC
Q 018019 77 LHVEVATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (362)
Q Consensus 77 ~~i~i~~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~ 153 (362)
..+.+..++.+.||+++|++.++.|- .+.++|++||+.+++++.+|++.|+..++.+|++..++...
T Consensus 78 ~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e---------- 147 (407)
T KOG1460|consen 78 VPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSRE---------- 147 (407)
T ss_pred cchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHh----------
Confidence 34556666778999999999988774 35699999999999999999999999999999998876531
Q ss_pred ccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccc
Q 018019 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL 233 (362)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~ 233 (362)
+..+||.++-|++...++++. ||+. +.-++.+++|+|+|++++|..+.+- | ..
T Consensus 148 -----~asnfG~lV~dP~t~evlHYv-----eKPs-------------TfvSd~InCGvYlF~~eif~~i~~v---~-~q 200 (407)
T KOG1460|consen 148 -----QASNFGCLVEDPSTGEVLHYV-----EKPS-------------TFVSDIINCGVYLFTPEIFNAIAEV---Y-RQ 200 (407)
T ss_pred -----HhhccCeeeecCCcCceEEee-----cCcc-------------hhhhcccceeEEEecHHHHHHHHHH---H-HH
Confidence 257899999998777778887 4543 3457999999999999999766331 1 22
Q ss_pred hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceE
Q 018019 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (362)
Q Consensus 234 ~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 313 (362)
++|+.... +++ ...|+- +.|+ -.|++.-++.+ .+ .-.+|+|+. ++||
T Consensus 201 ~~~~~~~~--~~~----~~l~~g---~~d~--------irLeqDvlspL--------ag------~k~lY~y~t--~~fW 247 (407)
T KOG1460|consen 201 RQDLLEVE--KDL----PLLQPG---PADF--------IRLEQDVLSPL--------AG------SKQLYAYET--TDFW 247 (407)
T ss_pred HHhhhhhh--hcc----cccCCC---ccce--------EEeechhhhhh--------cC------CCceEEEec--ccHH
Confidence 22211110 011 001100 0000 00111111111 11 246799987 7899
Q ss_pred EEeCCHHHHHHHhHHHhhhh---------------cccCCCCCCCCCCccCCCceecccccccC
Q 018019 314 VRLNSIQAFMDINRDVIGEA---------------NHLSGYNFSAQNNIIHPSAELGSKTTQLA 362 (362)
Q Consensus 314 ~rin~~~~Y~~~n~~~l~~~---------------~~~~~~~~~~~~~~i~~~~~i~~k~~i~~ 362 (362)
..|.|..+=..+|+-.|+.- ..+-|..|+..+..+||+++|||+++|||
T Consensus 248 ~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga 311 (407)
T KOG1460|consen 248 SQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGA 311 (407)
T ss_pred HHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecC
Confidence 99999988888888877621 01234556667777778888888888876
No 26
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=3.2e-31 Score=243.32 Aligned_cols=236 Identities=17% Similarity=0.283 Sum_probs=174.4
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-c-------
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V------- 74 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~------- 74 (362)
|+|||+|||.|+||+|+ |..+||||+||+|||||+|+|++|.++|+++|+|++++.. +++.+|+...+ .
T Consensus 1 mkaiIlAaG~gtRl~pl-t~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~ 77 (267)
T cd02541 1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGK--RAIEDHFDRSYELEETLEKK 77 (267)
T ss_pred CeEEEEcCCCCccCCCc-ccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCch--HHHHHHhCCcHHHHHHHHhc
Confidence 58999999999999999 9999999999999999999999999999999999999764 47888885311 0
Q ss_pred -------------CCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEEe
Q 018019 75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC 138 (362)
Q Consensus 75 -------------~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~~ 138 (362)
....+.++.++...|++++++.+++++..++|+|++||.++.. ++.++++.|++.++++ +++.
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 156 (267)
T cd02541 78 GKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVE 156 (267)
T ss_pred ccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEE
Confidence 0123445556667999999999999987678999999976543 4999999998877764 4444
Q ss_pred eeccCCCcccCCCCCccCCCCCCcceEEEEcCC-C--cEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEee
Q 018019 139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT-K--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215 (362)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~ 215 (362)
..+.. .+..|+++.+|++ + ..+..+.+++..++ ..+.++++|+|+|
T Consensus 157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~----------------~~~~~~~~Giyi~ 205 (267)
T cd02541 157 EVPPE---------------DVSKYGIVKGEKIDGDVFKVKGLVEKPKPEE----------------APSNLAIVGRYVL 205 (267)
T ss_pred EcChh---------------cCccceEEEeecCCCCceEEeEEEECCCCCC----------------CCCceEEEEEEEc
Confidence 33211 2457899999862 2 24566664322111 2347889999999
Q ss_pred CHHHHHHHHhcCcc--cccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCC
Q 018019 216 NRSVLQEVLDQKDK--FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGS 293 (362)
Q Consensus 216 s~~vl~~~~~~~~~--~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (362)
++++|..+.+...+ -...-.|+++.+++.
T Consensus 206 ~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~------------------------------------------------- 236 (267)
T cd02541 206 TPDIFDILENTKPGKGGEIQLTDAIAKLLEE------------------------------------------------- 236 (267)
T ss_pred CHHHHHHHHhCCCCCCCcEEHHHHHHHHHhc-------------------------------------------------
Confidence 99999766431111 011123666666632
Q ss_pred CCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHHh
Q 018019 294 APVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI 330 (362)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l 330 (362)
.++++|.+ +|||..|+|+.+|+++||++.
T Consensus 237 ------~~v~~~~~--~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 237 ------EPVYAYVF--EGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred ------CCEEEEEe--eeEEEeCCCHHHHHHHHHHHh
Confidence 25688888 689999999999999999874
No 27
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=1e-30 Score=240.95 Aligned_cols=232 Identities=19% Similarity=0.313 Sum_probs=174.8
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (362)
Q Consensus 4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~ 83 (362)
+|||||||.||||+|+ |..+||+|+||+|||||+|+|++|..+|+++|+|++.+.. .+.+.+++.+...-...+.++.
T Consensus 1 kaIILAgG~GtRL~pl-T~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~-~~~~~~~lg~g~~~g~~i~~~~ 78 (286)
T TIGR01207 1 KGIILAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGVNLSYAV 78 (286)
T ss_pred CEEEECCCCCccCCcc-cCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCc-HHHHHHHhccccccCceEEEEE
Confidence 5899999999999999 9999999999999999999999999999999998876433 3467777764210012455566
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCc
Q 018019 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (362)
Q Consensus 84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (362)
++++.|++++++.+.+++..++++++.||. +++.++.++++.|.+.++++|+++.+++ ++.+
T Consensus 79 q~~~~Gta~al~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~-----------------~p~~ 141 (286)
T TIGR01207 79 QPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS-----------------DPER 141 (286)
T ss_pred ccCCCCHHHHHHHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc-----------------CHHH
Confidence 677899999999999999767888999994 5688999999999888888888877653 2668
Q ss_pred ceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc--cccc-hhhhhh
Q 018019 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK--FQSL-KQDVLP 239 (362)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~--~~s~-~~d~ip 239 (362)
||++.+|+++++ ..+. ||+. ...++++++|+|+|++++++.+ +.... ..++ -.|+++
T Consensus 142 yGvv~~d~~g~V-~~i~-----EKp~-------------~~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~eitdv~~ 201 (286)
T TIGR01207 142 YGVVEFDSNGRA-ISIE-----EKPA-------------QPKSNYAVTGLYFYDNRVVEIA-RQLKPSARGELEITDLNR 201 (286)
T ss_pred CceEEECCCCeE-EEEE-----ECCC-------------CCCCCEEEEEEEEEchHHHHHH-hhcCCCCCCcEeHHHHHH
Confidence 999999987764 5666 3432 1235789999999999998544 32210 1111 136666
Q ss_pred HHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCce-EEEeCC
Q 018019 240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY-CVRLNS 318 (362)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~rin~ 318 (362)
.++++.. +.++.+ . +|| |..|.|
T Consensus 202 ~~l~~g~-----------------------------------------------------l~v~~~--~-~g~~W~DiGt 225 (286)
T TIGR01207 202 VYLEEGR-----------------------------------------------------LSVELL--G-RGYAWLDTGT 225 (286)
T ss_pred HHHHcCC-----------------------------------------------------cEEEEe--c-CCCEEEeCCC
Confidence 6664321 223333 2 466 999999
Q ss_pred HHHHHHHhHHHh
Q 018019 319 IQAFMDINRDVI 330 (362)
Q Consensus 319 ~~~Y~~~n~~~l 330 (362)
..+|+++|..+-
T Consensus 226 ~~~l~~A~~~~~ 237 (286)
T TIGR01207 226 HDSLLEASNFIQ 237 (286)
T ss_pred HHHHHHHHHHHH
Confidence 999999987663
No 28
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=8.1e-31 Score=239.74 Aligned_cols=230 Identities=16% Similarity=0.259 Sum_probs=170.3
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-c-------
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V------- 74 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~------- 74 (362)
|+|||||||.||||+|+ |..+||||+||+|+|||+|+|++|.++|+++|+|++++.. +++.+|++..+ .
T Consensus 1 m~avIlAaG~gtRl~pl-t~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~--~~i~~~~~~~~~~~~~~~~~ 77 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGK--RAIEDHFDTSYELEHQLEKR 77 (260)
T ss_pred CeEEEEcccCcccCCCc-ccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcH--HHHHHHhcccHHHHHHHHhh
Confidence 57999999999999999 9999999999999999999999999999999999999763 57888886311 0
Q ss_pred -------------CCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEEe
Q 018019 75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC 138 (362)
Q Consensus 75 -------------~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~~ 138 (362)
....+.+..+....|++++++.+.+++..++|+|++||.++.. ++.++++.|+++++++ +++.
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~ 156 (260)
T TIGR01099 78 GKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE 156 (260)
T ss_pred hhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence 0112334445567999999999999886678999999976543 7999999999888876 4444
Q ss_pred eeccCCCcccCCCCCccCCCCCCcceEEEEcC---CCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEee
Q 018019 139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP---TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215 (362)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~---~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~ 215 (362)
..+.. .+..|+++.+|. ++..+..+.+++..+ ...++++++|+|+|
T Consensus 157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----------------~~~~~~~~~Giyi~ 205 (260)
T TIGR01099 157 EVPKE---------------EVSKYGVIDGEGVEEGLYEIKDMVEKPKPE----------------EAPSNLAIVGRYVL 205 (260)
T ss_pred ECChh---------------hcccCceEEeccccCCceeEEEEEECCCCC----------------CCCCceEEEEEEEC
Confidence 33211 256789998863 322456776432111 11346899999999
Q ss_pred CHHHHHHHHhcCcc---cccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCC
Q 018019 216 NRSVLQEVLDQKDK---FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNG 292 (362)
Q Consensus 216 s~~vl~~~~~~~~~---~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (362)
++++|..+.+.... ..++ .|+++.++++
T Consensus 206 ~~~~~~~l~~~~~~~~~~~~l-~d~i~~l~~~------------------------------------------------ 236 (260)
T TIGR01099 206 TPDIFDLLEETPPGAGGEIQL-TDALRKLLEK------------------------------------------------ 236 (260)
T ss_pred CHHHHHHHHhCCCCCCCceeH-HHHHHHHHhc------------------------------------------------
Confidence 99999877543221 1122 3666666532
Q ss_pred CCCCCceeeEEEEEecCCceEEEeCCHHHHHHH
Q 018019 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDI 325 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~ 325 (362)
.++++|++ +|||..|.|+.+|+++
T Consensus 237 -------~~v~~~~~--~g~w~digs~~~y~~a 260 (260)
T TIGR01099 237 -------ETVYAYKF--KGKRYDCGSKLGYLKA 260 (260)
T ss_pred -------CCEEEEEc--ceEEEeCCCHHHHhhC
Confidence 24688888 7899999999999974
No 29
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.98 E-value=2.7e-30 Score=232.83 Aligned_cols=232 Identities=20% Similarity=0.342 Sum_probs=179.1
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
|+|||+|||.|+||+|+ |..+||+|+||+|+|||+|++++|.++|+++|+|++++. .+.+.+++++...-...+.++
T Consensus 1 m~avIlAaG~g~Rl~pl-t~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~--~~~~~~~~~~~~~~~~~i~~~ 77 (236)
T cd04189 1 MKGLILAGGKGTRLRPL-TYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPT--GEEIKEALGDGSRFGVRITYI 77 (236)
T ss_pred CeEEEECCCcccccccc-ccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCC--HHHHHHHhcchhhcCCeEEEE
Confidence 68999999999999999 999999999999999999999999999999999999874 357888886521111234455
Q ss_pred EcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCc
Q 018019 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (362)
.+....|++++++.+..++..+++++++||.+++.++.++++.|..+++++++++.+.+ .+..
T Consensus 78 ~~~~~~g~~~sl~~a~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 140 (236)
T cd04189 78 LQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE-----------------DPRR 140 (236)
T ss_pred ECCCCCChHHHHHHHHHhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC-----------------Cccc
Confidence 55667899999999999886578999999999999999999999988888888876532 1456
Q ss_pred ceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc---cccchhhhhh
Q 018019 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK---FQSLKQDVLP 239 (362)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~---~~s~~~d~ip 239 (362)
|+++.+|+ + .+..+.+ |+. ...+.+.++|+|+|++++|..+...... -.++ .|+++
T Consensus 141 ~g~~~~d~-~-~v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~~ 199 (236)
T cd04189 141 FGVAVVDD-G-RIVRLVE-----KPK-------------EPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAIQ 199 (236)
T ss_pred ceEEEEcC-C-eEEEEEE-----CCC-------------CCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHHH
Confidence 78888875 4 4456553 321 1124678999999999999765321111 1112 46777
Q ss_pred HHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCH
Q 018019 240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI 319 (362)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~ 319 (362)
.+++.+ .++++|.+ +|||..|+|+
T Consensus 200 ~~i~~g------------------------------------------------------~~v~~~~~--~~~~~~i~t~ 223 (236)
T cd04189 200 WLIDRG------------------------------------------------------RRVGYSIV--TGWWKDTGTP 223 (236)
T ss_pred HHHHcC------------------------------------------------------CcEEEEEc--CceEEeCCCH
Confidence 766432 35678877 7899999999
Q ss_pred HHHHHHhHHHhh
Q 018019 320 QAFMDINRDVIG 331 (362)
Q Consensus 320 ~~Y~~~n~~~l~ 331 (362)
..|.++|+.+|+
T Consensus 224 ~dl~~a~~~~l~ 235 (236)
T cd04189 224 EDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHHh
Confidence 999999999985
No 30
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.98 E-value=3.8e-31 Score=235.15 Aligned_cols=206 Identities=33% Similarity=0.506 Sum_probs=157.4
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh----cCCcc
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY----VDRLH 78 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~----~~~~~ 78 (362)
|+|||+|||.|+||.|+ |...||+|+|++|+|||+|++++|.++|+++|+|++++.. +.+.+++.+.. ....+
T Consensus 1 ~~avIlagg~g~rl~pl-t~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~--~~~~~~~~~~~~~~~~~~~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPL-TSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHS--QAIIEHLLKSKWSSLSSKMI 77 (216)
T ss_pred CeEEEEeCCCccccCcc-ccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcH--HHHHHHHHhcccccccCCce
Confidence 68999999999999999 9999999999999999999999999999999999999764 36667765421 11123
Q ss_pred eEEEE--cCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHH--HHhcCCeEEEEEeeeccCCCcccCCCCCc
Q 018019 79 VEVAT--VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAA--HRRHDAVVTAMICSVPVSGLSEAGSSGAK 154 (362)
Q Consensus 79 i~i~~--~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~--h~~~~a~~t~l~~~~~~~~~~~~~~~~~~ 154 (362)
+.+.. +.+..|++++++.+.+.+ .++|+|++||++++.++..+++. +...++++|+++..........
T Consensus 78 v~~~~~~~~~~~Gta~~l~~~~~~i-~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~------- 149 (216)
T cd02507 78 VDVITSDLCESAGDALRLRDIRGLI-RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTE------- 149 (216)
T ss_pred EEEEEccCCCCCccHHHHHHHhhcC-CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCcc-------
Confidence 33333 245799999999999888 57899999999999999999965 4445666666665543211100
Q ss_pred cCCCCCCcceEEEEcCCC--cEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHH
Q 018019 155 DKTKKPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220 (362)
Q Consensus 155 ~~~~~~~~~~~v~~d~~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl 220 (362)
..+....++++++|+++ .+++++.+..+..+...+++++++++|++.++++++|+|||+|++|+|
T Consensus 150 -~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 150 -QSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred -ccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 01235678999999986 334444443333333456999999999999999999999999999975
No 31
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.97 E-value=4.8e-30 Score=233.64 Aligned_cols=224 Identities=18% Similarity=0.306 Sum_probs=173.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE---
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV--- 81 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i--- 81 (362)
|||||||.|+||+|+ |..+||||+||+|+|||+|+++++.++|+++|+|++++. .+.+.+++.+......++.+
T Consensus 1 aiilaaG~g~Rl~pl-t~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~~~~~ 77 (253)
T cd02524 1 VVILAGGLGTRLSEE-TELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYK--GHVIKEYFLNYFLHNSDVTIDLG 77 (253)
T ss_pred CEEEecCCccccCCc-cCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCC--HHHHHHHHHhhhhhcCceeEeec
Confidence 699999999999999 999999999999999999999999999999999999976 35888888753211111111
Q ss_pred ------E------------EcCCCCCHHHHHHHHHHhcCC-CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeecc
Q 018019 82 ------A------------TVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142 (362)
Q Consensus 82 ------~------------~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~ 142 (362)
. .+....||+++++.+++++.. ++|++++||++++.++..+++.|...++++|+++.. +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~-~- 155 (253)
T cd02524 78 TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH-P- 155 (253)
T ss_pred ccceeeecccccccceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec-C-
Confidence 1 112246799999999999865 789999999999999999999999999999987643 1
Q ss_pred CCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHH
Q 018019 143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE 222 (362)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~ 222 (362)
+..|+++.+|++|++ ..+.+ |+. ..+.++++|+|+|++++|..
T Consensus 156 -----------------~~~~g~v~~d~~g~V-~~~~e-----kp~--------------~~~~~i~~Giyi~~~~l~~~ 198 (253)
T cd02524 156 -----------------PGRFGELDLDDDGQV-TSFTE-----KPQ--------------GDGGWINGGFFVLEPEVFDY 198 (253)
T ss_pred -----------------CCcccEEEECCCCCE-EEEEE-----CCC--------------CCCceEEEEEEEECHHHHHh
Confidence 346788999988765 56653 321 11357899999999999865
Q ss_pred HHhcCcccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeE
Q 018019 223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC 302 (362)
Q Consensus 223 ~~~~~~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (362)
+... ..++..|+++.|+++ .++
T Consensus 199 l~~~---~~~~~~d~l~~li~~-------------------------------------------------------~~v 220 (253)
T cd02524 199 IDGD---DTVFEREPLERLAKD-------------------------------------------------------GEL 220 (253)
T ss_pred hccc---cchhhHHHHHHHHhc-------------------------------------------------------CCE
Confidence 5332 233446788877743 245
Q ss_pred EEEEecCCceEEEeCCHHHHHHHhHHHh
Q 018019 303 CVYIASNSKYCVRLNSIQAFMDINRDVI 330 (362)
Q Consensus 303 ~~~~~~~~~y~~rin~~~~Y~~~n~~~l 330 (362)
++|.+ +|||..|+|+.+|.+++..+-
T Consensus 221 ~~~~~--~g~w~~I~t~~~~~~~~~~~~ 246 (253)
T cd02524 221 MAYKH--TGFWQCMDTLRDKQTLEELWN 246 (253)
T ss_pred EEEec--CCEEEeCcCHHHHHHHHHHHH
Confidence 78887 789999999999999996653
No 32
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=3.3e-30 Score=230.04 Aligned_cols=216 Identities=15% Similarity=0.244 Sum_probs=168.2
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE-
Q 018019 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA- 82 (362)
Q Consensus 4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~- 82 (362)
+|||||||.|+||+|+ |..+||||+|++|+|||+|+|++|.++|+++|+|++++. .+++.+|+.+ ..+++.+.
T Consensus 1 kaiIlaaG~g~Rl~pl-t~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~---~~~~~~i~~ 74 (221)
T cd06422 1 KAMILAAGLGTRMRPL-TDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHL--ADQIEAHLGD---SRFGLRITI 74 (221)
T ss_pred CEEEEcCCCCCccccc-cCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCC--HHHHHHHHhc---ccCCceEEE
Confidence 5899999999999999 999999999999999999999999999999999999865 3588888875 12344443
Q ss_pred -EcC-CCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHH--hcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019 83 -TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHR--RHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (362)
Q Consensus 83 -~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~--~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (362)
.+. +..|++++++.+++++..++|+|++||++++.++.++++.|+ ..++.+|+...+.+
T Consensus 75 ~~~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 137 (221)
T cd06422 75 SDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP----------------- 137 (221)
T ss_pred ecCCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC-----------------
Confidence 333 468999999999998866789999999999999999999998 45666776654432
Q ss_pred CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhhh
Q 018019 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238 (362)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~i 238 (362)
....++++.+|+++++ ..+. +++ ..+++++|+|+|++++|..+.+. .. .-.|++
T Consensus 138 ~~~~~g~v~~d~~~~v-~~~~-----~~~----------------~~~~~~~Giyi~~~~~l~~l~~~---~~-~~~d~~ 191 (221)
T cd06422 138 GHNGVGDFSLDADGRL-RRGG-----GGA----------------VAPFTFTGIQILSPELFAGIPPG---KF-SLNPLW 191 (221)
T ss_pred CCCCcceEEECCCCcE-eecc-----cCC----------------CCceEEEEEEEEcHHHHhhCCcC---cc-cHHHHH
Confidence 1456788889887754 4443 232 12678999999999999766432 11 224777
Q ss_pred hHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCC
Q 018019 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS 318 (362)
Q Consensus 239 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~ 318 (362)
+.++++ .++++|.+ +|||..|+|
T Consensus 192 ~~l~~~-------------------------------------------------------~~~~~~~~--~g~w~di~t 214 (221)
T cd06422 192 DRAIAA-------------------------------------------------------GRLFGLVY--DGLWFDVGT 214 (221)
T ss_pred HHHHHc-------------------------------------------------------CCeEEEec--CCEEEcCCC
Confidence 777643 13477776 799999999
Q ss_pred HHHHHHH
Q 018019 319 IQAFMDI 325 (362)
Q Consensus 319 ~~~Y~~~ 325 (362)
+.+|.++
T Consensus 215 ~~~~~~a 221 (221)
T cd06422 215 PERLLAA 221 (221)
T ss_pred HHHHhhC
Confidence 9999864
No 33
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.97 E-value=1.8e-29 Score=234.47 Aligned_cols=232 Identities=12% Similarity=0.225 Sum_probs=174.3
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh--c---C--
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--V---D-- 75 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~--~---~-- 75 (362)
|+|||+|||.|+||+|+ |..+||+|+||+|||||+|+|++|.++|+++|+|++++.. +.+.+|+...+ . +
T Consensus 9 ~~aiIlaaG~g~Rl~~~-t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPA-TKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK--NSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred eEEEEECCcCCccCCCc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCH--HHHHHHHccchhhhhhhhhh
Confidence 68999999999999999 9999999999999999999999999999999999999763 57888886411 0 0
Q ss_pred ---------------CcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCccc--------CCChHHHHHHHHhcCCe
Q 018019 76 ---------------RLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVS--------DVPPGAVTAAHRRHDAV 132 (362)
Q Consensus 76 ---------------~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~--------~~~l~~~l~~h~~~~a~ 132 (362)
...+.++.+.+..||++|++.+.+++.+++|+|++||.++ +.++.++++.|.+++++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~ 165 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS 165 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence 1123344456679999999999998866789999999765 37999999999888776
Q ss_pred EEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcC----CC--cEEEEeecCcccccccccchHHHhhcCceeeecC
Q 018019 133 VTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP----TK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRAD 206 (362)
Q Consensus 133 ~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~----~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~ 206 (362)
|+++...+ .+..||++.+++ .+ ..+..+.+++..+ ...++
T Consensus 166 -tl~~~~~~-----------------~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~----------------~~~s~ 211 (302)
T PRK13389 166 -QIMVEPVA-----------------DVTAYGVVDCKGVELAPGESVPMVGVVEKPKAD----------------VAPSN 211 (302)
T ss_pred -EEEEEEcc-----------------cCCcceEEEecCcccccCCcceEEEEEECCCCC----------------CCCcc
Confidence 56655432 256789998864 11 2345666432111 01247
Q ss_pred ceeceEEeeCHHHHHHHHhcCc---ccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCccc
Q 018019 207 LMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH 283 (362)
Q Consensus 207 l~~~giYi~s~~vl~~~~~~~~---~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (362)
++++|+|+|++++|+ +++... .....-.|+++.++++
T Consensus 212 ~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~--------------------------------------- 251 (302)
T PRK13389 212 LAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEK--------------------------------------- 251 (302)
T ss_pred EEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHc---------------------------------------
Confidence 899999999999995 444321 1111224777776642
Q ss_pred ccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 018019 284 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 329 (362)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~ 329 (362)
.++++|.+ +|||..|.|+..|.++|++.
T Consensus 252 ----------------~~v~~~~~--~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 252 ----------------ETVEAYHM--KGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred ----------------CCEEEEEe--eeEEEeCCCHHHHHHHHHHH
Confidence 24688888 78999999999999999986
No 34
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.97 E-value=1.4e-28 Score=218.56 Aligned_cols=199 Identities=29% Similarity=0.494 Sum_probs=154.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~ 84 (362)
|||||||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|++++. .+.+.+++.+.......+.++.+
T Consensus 1 aiIlaaG~g~R~~~~-t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~i~~~~~ 77 (217)
T cd04181 1 AVILAAGKGTRLRPL-TDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYL--GEQIEEYFGDGSKFGVNIEYVVQ 77 (217)
T ss_pred CEEecCCcccccccc-ccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHcChhhcCceEEEEeC
Confidence 699999999999999 999999999999999999999999999999999999865 35778887642111123555555
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcce
Q 018019 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (362)
Q Consensus 85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (362)
+...|++++++.+++++..++|+|++||++++.++.++++.|+++++++|+++.+.+ .+..|+
T Consensus 78 ~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 140 (217)
T cd04181 78 EEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE-----------------DPSRYG 140 (217)
T ss_pred CCCCccHHHHHHhhhhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC-----------------CCCcce
Confidence 566899999999999886678999999999999999999999999999998876542 255789
Q ss_pred EEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc-ccccchhhhhhHHHH
Q 018019 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-KFQSLKQDVLPYLVR 243 (362)
Q Consensus 165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~-~~~s~~~d~ip~l~~ 243 (362)
++.+|+++++ ..+.+ |+. .....++++|+|+|++++|+. +++.. .-.++..|+++.+++
T Consensus 141 ~v~~d~~~~v-~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~ 200 (217)
T cd04181 141 VVELDDDGRV-TRFVE-----KPT-------------LPESNLANAGIYIFEPEILDY-IPEILPRGEDELTDAIPLLIE 200 (217)
T ss_pred EEEEcCCCcE-EEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHHh-hhhcCCcccccHHHHHHHHHh
Confidence 9999987764 56653 321 011378899999999999854 44332 123344566666664
No 35
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.97 E-value=1.7e-28 Score=218.75 Aligned_cols=222 Identities=27% Similarity=0.448 Sum_probs=171.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~ 84 (362)
|||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++|+|++++.. +.+.+++.....-...+.+..+
T Consensus 1 aiIlaaG~g~R~~~~-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~--~~i~~~~~~~~~~~~~~~~~~~ 77 (223)
T cd06915 1 AVILAGGLGTRLRSV-VKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLA--EQIEEYFGDGYRGGIRIYYVIE 77 (223)
T ss_pred CEEecCCcccccCcc-cCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCH--HHHHHHHcCccccCceEEEEEC
Confidence 699999999999999 9999999999999999999999999999999999998653 4677777642100122334444
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcce
Q 018019 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (362)
Q Consensus 85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (362)
....|++++++.+++++..+++++++||.+++.++.++++.|++.++++++++.+.. ....++
T Consensus 78 ~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 140 (223)
T cd06915 78 PEPLGTGGAIKNALPKLPEDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP-----------------DASRYG 140 (223)
T ss_pred CCCCcchHHHHHHHhhcCCCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECC-----------------CCCcce
Confidence 567999999999999886678999999998899999999999888888888776532 134678
Q ss_pred EEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhhhhHHHHh
Q 018019 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS 244 (362)
Q Consensus 165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~ip~l~~~ 244 (362)
++.+|+++++ ..+.+ ++. ...+.++++|+|+|++++|..+... . .++..|+++.++++
T Consensus 141 ~v~~d~~~~v-~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~l~~~~~~--~-~~~~~~~~~~l~~~ 198 (223)
T cd06915 141 NVTVDGDGRV-IAFVE-----KGP-------------GAAPGLINGGVYLLRKEILAEIPAD--A-FSLEADVLPALVKR 198 (223)
T ss_pred eEEECCCCeE-EEEEe-----CCC-------------CCCCCcEEEEEEEECHHHHhhCCcc--C-CChHHHHHHHHHhc
Confidence 8888887654 56652 221 0135788999999999999765332 1 23456777776632
Q ss_pred hhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHH
Q 018019 245 QLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMD 324 (362)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~ 324 (362)
-++++|++ +|++..|+|..+|++
T Consensus 199 -------------------------------------------------------~~v~~~~~--~~~~~dI~t~~dl~~ 221 (223)
T cd06915 199 -------------------------------------------------------GRLYGFEV--DGYFIDIGIPEDYAR 221 (223)
T ss_pred -------------------------------------------------------CcEEEEec--CCeEEecCCHHHHHh
Confidence 14688888 689999999999998
Q ss_pred H
Q 018019 325 I 325 (362)
Q Consensus 325 ~ 325 (362)
+
T Consensus 222 a 222 (223)
T cd06915 222 A 222 (223)
T ss_pred h
Confidence 7
No 36
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=2.7e-28 Score=217.37 Aligned_cols=220 Identities=21% Similarity=0.409 Sum_probs=168.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~ 84 (362)
+||||||.|+||+|+ |.++||+|+|++|+|||+|+|++|.++|+++|+|++++. .+.+.+++.........+.++.+
T Consensus 1 ~vIlaaG~g~R~~pl-t~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~~~~~~~~i~~~~~ 77 (220)
T cd06426 1 VVIMAGGKGTRLRPL-TENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYL--AEMIEDYFGDGSKFGVNISYVRE 77 (220)
T ss_pred CEEecCCCccccCcc-cCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccC--HHHHHHHHCCccccCccEEEEEC
Confidence 689999999999999 999999999999999999999999999999999999865 34677777642100123444444
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcce
Q 018019 85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN 164 (362)
Q Consensus 85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (362)
+...|++++++.+.+.. .++|+|++||++++.++..+++.|+..++++++++.... ....|+
T Consensus 78 ~~~~g~~~~l~~~~~~~-~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~g 139 (220)
T cd06426 78 DKPLGTAGALSLLPEKP-TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE-----------------VQVPYG 139 (220)
T ss_pred CCCCcchHHHHHHHhhC-CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC-----------------CCCcce
Confidence 56789999998777655 578999999999999999999999988888888775532 134578
Q ss_pred EEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhhhhHHHHh
Q 018019 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS 244 (362)
Q Consensus 165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~ip~l~~~ 244 (362)
++..|+ ++ +..+. |++. .+.++++|+|+|++.++..+ .+.. +.++ .++++.++++
T Consensus 140 ~~~~d~-~~-v~~~~-----ek~~---------------~~~~~~~Giy~~~~~~~~~i-~~~~-~~~l-~~~~~~~i~~ 194 (220)
T cd06426 140 VVETEG-GR-ITSIE-----EKPT---------------HSFLVNAGIYVLEPEVLDLI-PKNE-FFDM-PDLIEKLIKE 194 (220)
T ss_pred EEEECC-CE-EEEEE-----ECCC---------------CCCeEEEEEEEEcHHHHhhc-CCCC-CcCH-HHHHHHHHHC
Confidence 888885 54 45665 3321 13678999999999998655 3322 2223 3667766643
Q ss_pred hhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHH
Q 018019 245 QLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMD 324 (362)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~ 324 (362)
+ .++++|.+ +|+|..|+|+.+|.+
T Consensus 195 ~------------------------------------------------------~~i~~~~~--~~~w~~igt~~dl~~ 218 (220)
T cd06426 195 G------------------------------------------------------KKVGVFPI--HEYWLDIGRPEDYEK 218 (220)
T ss_pred C------------------------------------------------------CcEEEEEe--CCeEEeCCCHHHHHh
Confidence 2 34688888 689999999999999
Q ss_pred Hh
Q 018019 325 IN 326 (362)
Q Consensus 325 ~n 326 (362)
+|
T Consensus 219 a~ 220 (220)
T cd06426 219 AN 220 (220)
T ss_pred hC
Confidence 86
No 37
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=5e-28 Score=238.63 Aligned_cols=232 Identities=19% Similarity=0.304 Sum_probs=174.1
Q ss_pred CC-ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 1 MD-FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 1 M~-~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|+ +.|||||||.|+|| ...+||+|+|++|+|||+|+|++|.++|++++++++++.. +++.+++.+ ...+
T Consensus 1 m~~~~avIlAaG~g~Rl----~~~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~--~~i~~~~~~----~~~i 70 (459)
T PRK14355 1 MNNLAAIILAAGKGTRM----KSDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQA--EKVREHFAG----DGDV 70 (459)
T ss_pred CCcceEEEEcCCCCccc----CCCCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCH--HHHHHHhcc----CCce
Confidence 44 78999999999999 4578999999999999999999999999999999998653 467777753 1245
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCC--CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCcc
Q 018019 80 EVATVPEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD 155 (362)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~ 155 (362)
.++.++...|++++++.+++++.+ ++|++++||. +.+.++..+++.|...+++++++..+..
T Consensus 71 ~~~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~-------------- 136 (459)
T PRK14355 71 SFALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE-------------- 136 (459)
T ss_pred EEEecCCCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC--------------
Confidence 566667779999999999998853 6799999995 6678899999999888888888765432
Q ss_pred CCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc-----cc
Q 018019 156 KTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-----KF 230 (362)
Q Consensus 156 ~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~-----~~ 230 (362)
.+..|+.+.+|+++++ ..+.+ |+..-+. ...++++++|+|+|++++|...++... ..
T Consensus 137 ---~~~~~g~v~~d~~g~v-~~~~e-----k~~~~~~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e 198 (459)
T PRK14355 137 ---NPFGYGRIVRDADGRV-LRIVE-----EKDATPE---------ERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGE 198 (459)
T ss_pred ---CCCcCCEEEEcCCCCE-EEEEE-----cCCCChh---------HhhccEEEEEEEEEeHHHHHHHHHHcCccccCCc
Confidence 1456788888887764 56653 2210000 012468899999999997656554211 11
Q ss_pred ccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCC
Q 018019 231 QSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNS 310 (362)
Q Consensus 231 ~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (362)
.+ -.|+++.|++++ .++++|.+ +
T Consensus 199 ~~-~~d~i~~l~~~g------------------------------------------------------~~v~~~~~--~ 221 (459)
T PRK14355 199 YY-LTDIVAMAAAEG------------------------------------------------------LRCLAFPV--A 221 (459)
T ss_pred ee-HHHHHHHHHHCC------------------------------------------------------CeEEEEEc--C
Confidence 12 246777766432 46788888 5
Q ss_pred ce--EEEeCCHHHHHHHhHHHhh
Q 018019 311 KY--CVRLNSIQAFMDINRDVIG 331 (362)
Q Consensus 311 ~y--~~rin~~~~Y~~~n~~~l~ 331 (362)
+| |..++|+.+|+++++.++.
T Consensus 222 ~~~~~~~i~~~~~~~~a~~~l~~ 244 (459)
T PRK14355 222 DPDEIMGVNDRAQLAEAARVLRR 244 (459)
T ss_pred CHHHhcCCCCHHHHHHHHHHHHH
Confidence 66 8999999999999886664
No 38
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=4.3e-28 Score=239.75 Aligned_cols=231 Identities=20% Similarity=0.261 Sum_probs=172.1
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|.|+|||||||+|+||++ .+||+|+|++|+|||+|+|++|.++|+++|+|++++. .+.+.+++. ..++.
T Consensus 6 ~~~~avILAaG~gtRl~~----~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~--~~~i~~~~~-----~~~i~ 74 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS----ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHG--AEQVEAALQ-----GSGVA 74 (481)
T ss_pred CCceEEEECCCCCCcCCC----CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhc-----cCCcE
Confidence 678999999999999954 5899999999999999999999999999999999865 346777664 23577
Q ss_pred EEEcCCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019 81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (362)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (362)
++.++...|++++++.+++++. +++|++++||. +.+.++.++++.|+++++++|+++...+
T Consensus 75 ~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~--------------- 139 (481)
T PRK14358 75 FARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP--------------- 139 (481)
T ss_pred EecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC---------------
Confidence 7766677899999999988874 35699999995 7788899999999999999998876543
Q ss_pred CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHH---HHHHHhcCc-cccc
Q 018019 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV---LQEVLDQKD-KFQS 232 (362)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~v---l~~~~~~~~-~~~s 232 (362)
++..|+++.+|+++++ ..+.++++... + ....+++++|+|+|++++ +..+..... +..+
T Consensus 140 --~~~~yG~v~~d~~g~v-~~~~Ek~~~~~------~--------~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~ 202 (481)
T PRK14358 140 --DATGYGRIVRGADGAV-ERIVEQKDATD------A--------EKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYY 202 (481)
T ss_pred --CCCCceEEEECCCCCE-EEEEECCCCCh------h--------HhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEE
Confidence 1456899999988764 56664221100 0 011356899999999655 432211111 1223
Q ss_pred chhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCce
Q 018019 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (362)
Q Consensus 233 ~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 312 (362)
+ .|+++.++++. .++++|.+ ++|
T Consensus 203 l-~d~i~~~~~~g------------------------------------------------------~~i~~~~~--~~~ 225 (481)
T PRK14358 203 L-TDLLGLYRAGG------------------------------------------------------AQVRAFKL--SDP 225 (481)
T ss_pred H-HHHHHHHHHCC------------------------------------------------------CeEEEEec--CCH
Confidence 3 37777776432 35677777 678
Q ss_pred EEEeCCHHHHHHHhHH-Hhh
Q 018019 313 CVRLNSIQAFMDINRD-VIG 331 (362)
Q Consensus 313 ~~rin~~~~Y~~~n~~-~l~ 331 (362)
+.-++...+|+.+|++ +|+
T Consensus 226 ~~~i~~~~~~~l~~~~~~l~ 245 (481)
T PRK14358 226 DEVLGANDRAGLAQLEATLR 245 (481)
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 8888988999999986 664
No 39
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.4e-27 Score=220.66 Aligned_cols=202 Identities=27% Similarity=0.382 Sum_probs=166.0
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|.+.+||||+|+|||| .+..||-|.|++||||++|+++.+...+.+++++++++. .+.+++.+.+. ..+.
T Consensus 1 ~~~~~vILAAGkGTRM----kS~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~--ae~V~~~~~~~----~~v~ 70 (460)
T COG1207 1 MSLSAVILAAGKGTRM----KSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHG--AEQVREALAER----DDVE 70 (460)
T ss_pred CCceEEEEecCCCccc----cCCCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCC--HHHHHHHhccc----cCce
Confidence 6789999999999999 788999999999999999999999999999999999976 46787777642 2588
Q ss_pred EEEcCCCCCHHHHHHHHHHhcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCcc
Q 018019 81 VATVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD 155 (362)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~ 155 (362)
++.|.++.||++|+.++++++. +.++||++|| +|+...|+.+++.|...++.+|+++...+
T Consensus 71 ~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~-------------- 136 (460)
T COG1207 71 FVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELD-------------- 136 (460)
T ss_pred EEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcC--------------
Confidence 9999999999999999999993 2469999999 68888899999999999999999988754
Q ss_pred CCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchh
Q 018019 156 KTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ 235 (362)
Q Consensus 156 ~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~ 235 (362)
+|..||.+..+++|.+ ..+.| +|+.+-... .-..+++|+|+|+...|..++..-.+-+...+
T Consensus 137 ---dP~GYGRIvr~~~g~V-~~IVE----~KDA~~eek----------~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgE 198 (460)
T COG1207 137 ---DPTGYGRIVRDGNGEV-TAIVE----EKDASEEEK----------QIKEINTGIYAFDGAALLRALPKLSNNNAQGE 198 (460)
T ss_pred ---CCCCcceEEEcCCCcE-EEEEE----cCCCCHHHh----------cCcEEeeeEEEEcHHHHHHHHHHhccccccCc
Confidence 3789999999988865 57775 333211111 11578999999999988888876444456678
Q ss_pred hhhhHHHHh
Q 018019 236 DVLPYLVRS 244 (362)
Q Consensus 236 d~ip~l~~~ 244 (362)
.+|++++.-
T Consensus 199 YYLTDvI~i 207 (460)
T COG1207 199 YYLTDVIAI 207 (460)
T ss_pred EeHHHHHHH
Confidence 888888754
No 40
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=3.5e-26 Score=226.72 Aligned_cols=233 Identities=23% Similarity=0.293 Sum_probs=169.5
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i 81 (362)
.+.|||||||.|+||++ .+||+|+|++|+|||+|+|++|.++|+++++|++++.. +.+.+++... ...+.+
T Consensus 4 ~~~avILAaG~gtRm~~----~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~---~~~~~~ 74 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRS----DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDR--ERVAPAVAEL---APEVDI 74 (482)
T ss_pred CceEEEEcCCCCCcCCC----CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCH--HHHHHHhhcc---CCccEE
Confidence 35799999999999953 68999999999999999999999999999999998653 4677776542 123555
Q ss_pred EEcCCCCCHHHHHHHHHHhcCC---CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019 82 ATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (362)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~i~~---~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (362)
+.++...|++++++.+++++.. ++++|++||. +.+.++.++++.|++.+++++++..+..
T Consensus 75 ~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~--------------- 139 (482)
T PRK14352 75 AVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD--------------- 139 (482)
T ss_pred EeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC---------------
Confidence 6666778999999999988752 5699999995 5677899999999888888887655432
Q ss_pred CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc-----ccc
Q 018019 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-----KFQ 231 (362)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~-----~~~ 231 (362)
.+..|+.+..++++++ ..+.++++... + ....+++++|+|+|++++|..++++.. +..
T Consensus 140 --~p~~yg~~~~~~~g~V-~~~~EKp~~~~------~--------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~ 202 (482)
T PRK14352 140 --DPTGYGRILRDQDGEV-TAIVEQKDATP------S--------QRAIREVNSGVYAFDAAVLRSALARLSSDNAQGEL 202 (482)
T ss_pred --CCCCCCEEEECCCCCE-EEEEECCCCCH------H--------HhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence 2557888888877764 56664221100 0 012356899999999999977654321 111
Q ss_pred cchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCc
Q 018019 232 SLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK 311 (362)
Q Consensus 232 s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (362)
. -.|+++++++.+ .++++|.+ +|
T Consensus 203 ~-l~d~i~~l~~~g------------------------------------------------------~~V~~~~~--~g 225 (482)
T PRK14352 203 Y-LTDVLAIAREAG------------------------------------------------------HRVGAHHA--DD 225 (482)
T ss_pred e-HHHHHHHHHHCC------------------------------------------------------CeEEEEec--CC
Confidence 1 246777766432 35688877 78
Q ss_pred eEEEeCCHHHH------HHHhHHHhhh
Q 018019 312 YCVRLNSIQAF------MDINRDVIGE 332 (362)
Q Consensus 312 y~~rin~~~~Y------~~~n~~~l~~ 332 (362)
||.-+.....| ..+|+++|+.
T Consensus 226 ~w~~~g~~~~~~~~~a~~~~~~~~~~~ 252 (482)
T PRK14352 226 SAEVAGVNDRVQLAALGAELNRRIVEA 252 (482)
T ss_pred cceEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 99888866666 5667777764
No 41
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=4.9e-26 Score=224.39 Aligned_cols=197 Identities=16% Similarity=0.249 Sum_probs=143.1
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|.|++||||||.|+||+ ..+||+|+|++|+|||+|++++|.++|++++++++++. .+.+.+++.. .++.
T Consensus 4 ~~~~aiIlAaG~gtRl~----~~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~--~~~i~~~~~~-----~~~~ 72 (456)
T PRK09451 4 SAMSVVILAAGKGTRMY----SDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHG--GDLLKQTLAD-----EPLN 72 (456)
T ss_pred CCceEEEEcCCCCCcCC----CCCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhhcc-----CCcE
Confidence 46899999999999995 46899999999999999999999999999999999865 3466666642 2466
Q ss_pred EEEcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCC
Q 018019 81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (362)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~ 157 (362)
++.++...|++++++.+++++. .+++++++||. +.+.++..+++.|.+.+ +++++.+..
T Consensus 73 ~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~---------------- 134 (456)
T PRK09451 73 WVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLD---------------- 134 (456)
T ss_pred EEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcC----------------
Confidence 7767777999999999988875 36799999995 67788999998886544 344443322
Q ss_pred CCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc-----cccc
Q 018019 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-----KFQS 232 (362)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~-----~~~s 232 (362)
++..|+++.. ++++ +..+.+++.... . ...++++++|+|+|++++|.++++... +...
T Consensus 135 -~~~~yG~v~~-~~g~-V~~~~EKp~~~~------~--------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~ 197 (456)
T PRK09451 135 -NPTGYGRITR-ENGK-VVGIVEQKDATD------E--------QRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYY 197 (456)
T ss_pred -CCCCceEEEe-cCCe-EEEEEECCCCCh------H--------HhhccEEEEEEEEEEHHHHHHHHHhcCCccccCcee
Confidence 2456888744 4564 567764321100 0 112367899999999999977665321 1122
Q ss_pred chhhhhhHHHHh
Q 018019 233 LKQDVLPYLVRS 244 (362)
Q Consensus 233 ~~~d~ip~l~~~ 244 (362)
+ .|+++.++++
T Consensus 198 l-~d~i~~~i~~ 208 (456)
T PRK09451 198 I-TDIIALAHQE 208 (456)
T ss_pred H-HHHHHHHHHC
Confidence 3 4788887754
No 42
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.94 E-value=5.4e-25 Score=197.69 Aligned_cols=178 Identities=18% Similarity=0.267 Sum_probs=133.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcch-HHHHHHHHHhhhcCCcceEEE-
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADA-ALRVGGWISAAYVDRLHVEVA- 82 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~-~~~i~~~~~~~~~~~~~i~i~- 82 (362)
+||||||+|+||+|+ |..+||||+|++|+|||+|+|++|.++|+++++|+++.... .+.+..++... ..++.++
T Consensus 1 ~iIlAaG~g~Rl~pl-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~---~~~~~i~~ 76 (231)
T cd04183 1 IIIPMAGLGSRFKKA-GYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL---APNATVVE 76 (231)
T ss_pred CEEECCcCCcccccc-CCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh---CCCCEEEE
Confidence 489999999999999 99999999999999999999999999999999999873211 11222222211 1234433
Q ss_pred EcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCC
Q 018019 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG 161 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (362)
.+....|++++++.++..+. .++|+|++||++++.++..++..|.+.+++.++++.... ..
T Consensus 77 ~~~~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~ 138 (231)
T cd04183 77 LDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS------------------HP 138 (231)
T ss_pred eCCCCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC------------------CC
Confidence 34567999999999999885 478999999999999999999988877777776655421 34
Q ss_pred cceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHH-HHHHHHh
Q 018019 162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS-VLQEVLD 225 (362)
Q Consensus 162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~-vl~~~~~ 225 (362)
.|+++.+|+++++ ..+.+ |+ ..+.+.++|+|+|+++ .|...++
T Consensus 139 ~~~~v~~d~~~~v-~~~~e-----k~---------------~~~~~~~~Giy~~~~~~~~~~~l~ 182 (231)
T cd04183 139 RWSYVKLDENGRV-IETAE-----KE---------------PISDLATAGLYYFKSGSLFVEAAK 182 (231)
T ss_pred CeEEEEECCCCCE-EEeEE-----cC---------------CCCCccEeEEEEECcHHHHHHHHH
Confidence 6788989887764 45542 31 1246789999999997 5544443
No 43
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.94 E-value=7.7e-26 Score=198.75 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=107.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhh--h-cC--Ccc
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAA--Y-VD--RLH 78 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~--~-~~--~~~ 78 (362)
|||||||.|+||+|+ |.++||+|+||+|+ |||+|+++++..+|+++++|++++.. +.+.+++.+. + .+ ..+
T Consensus 1 avILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~--~~i~~~~~~~~~~~~~~~~~~ 77 (200)
T cd02508 1 AIILAGGEGTRLSPL-TKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKS--RSLNDHLGSGKEWDLDRKNGG 77 (200)
T ss_pred CEEeCCCCCcccchh-hcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCCh--HHHHHHHhCCCcccCCCCCCC
Confidence 699999999999999 99999999999998 99999999999999999999999763 5788888641 1 11 112
Q ss_pred eEEEE------cCCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEE
Q 018019 79 VEVAT------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAM 136 (362)
Q Consensus 79 i~i~~------~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l 136 (362)
+.++. ++...||+++++.+.+++. .++|+|++||.+++.++.++++.|+++++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~ 144 (200)
T cd02508 78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVV 144 (200)
T ss_pred EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEE
Confidence 44443 2346999999999998884 3679999999999999999999998887777654
No 44
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.94 E-value=4.6e-25 Score=197.91 Aligned_cols=176 Identities=19% Similarity=0.246 Sum_probs=131.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~ 84 (362)
|||||||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|++++. .+.+.+|+++. .++.++..
T Consensus 1 aiIlAaG~g~Rl~~l-t~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~~~~~----~~~~~~~~ 73 (229)
T cd02523 1 AIILAAGRGSRLRPL-TEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYK--KEQIEELLKKY----PNIKFVYN 73 (229)
T ss_pred CEEEeccCccccchh-hCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccC--HHHHHHHHhcc----CCeEEEeC
Confidence 699999999999999 999999999999999999999999999999999999975 35788887642 35666665
Q ss_pred CC--CCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCc
Q 018019 85 PE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR 162 (362)
Q Consensus 85 ~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (362)
+. ..|++++++.+++++ .+++++++||++++. ++++.|.+.++++|+++.+... . ....
T Consensus 74 ~~~~~~g~~~s~~~~~~~~-~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~ 134 (229)
T cd02523 74 PDYAETNNIYSLYLARDFL-DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTK--E-------------WEDE 134 (229)
T ss_pred cchhhhCcHHHHHHHHHHc-CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcc--c-------------cccc
Confidence 43 589999999999988 578999999998754 5677788888888888765211 0 1223
Q ss_pred ceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
+++...|+ +++ ..+. +++.. .....+.++|+|+|+++++..+.+
T Consensus 135 ~~~~~~~~-~~v-~~~~-----~k~~~------------~~~~~~~~~Giy~~~~~~~~~l~~ 178 (229)
T cd02523 135 YVKDLDDA-GVL-LGII-----SKAKN------------LEEIQGEYVGISKFSPEDADRLAE 178 (229)
T ss_pred ceeeecCc-cce-Eeec-----ccCCC------------cchhceEEEeEEEECHHHHHHHHH
Confidence 33333332 333 3443 22210 012367899999999999876643
No 45
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=2.5e-24 Score=212.54 Aligned_cols=181 Identities=22% Similarity=0.360 Sum_probs=137.5
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|+++|||||||.|+|| ...+||+|+|++|+|||+|+|++|.++|+++++|++++.. +++.+++.. ++.
T Consensus 1 m~~~avIlAaG~g~Rl----~~~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~--~~i~~~~~~------~~~ 68 (458)
T PRK14354 1 MNRYAIILAAGKGTRM----KSKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGA--EEVKEVLGD------RSE 68 (458)
T ss_pred CCceEEEEeCCCCccc----CCCCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCH--HHHHHHhcC------CcE
Confidence 8999999999999999 4579999999999999999999999999999999988653 466666543 244
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCC--CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019 81 VATVPEDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (362)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (362)
++.+++..|++++++.+++++.. ++++++.|| ++.+.++.++++.|++.++++|+++....
T Consensus 69 ~~~~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~--------------- 133 (458)
T PRK14354 69 FALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE--------------- 133 (458)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC---------------
Confidence 55566678999999999998853 569999999 46678899999999888888888765432
Q ss_pred CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
++..|+++..|+++++ ..+.+ ++. .... .....++++|+|+|+++.|...++
T Consensus 134 --~~~~~g~v~~d~~~~V-~~~~e-----k~~-~~~~--------~~~~~~~~~Giy~f~~~~l~~~l~ 185 (458)
T PRK14354 134 --NPTGYGRIIRNENGEV-EKIVE-----QKD-ATEE--------EKQIKEINTGTYCFDNKALFEALK 185 (458)
T ss_pred --CCCCceEEEEcCCCCE-EEEEE-----CCC-CChH--------HhcCcEEEEEEEEEEHHHHHHHHH
Confidence 1445788888877764 45553 211 0000 012357899999999986655543
No 46
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=6.9e-25 Score=215.84 Aligned_cols=176 Identities=22% Similarity=0.399 Sum_probs=134.4
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
|+|||||||.|+|| ...+||+|+|++|||||+|+|++|.+.+ ++++|++++.. +.+.+++.. ++.++
T Consensus 1 m~avIlA~G~gtRl----~~~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~--~~i~~~~~~------~~~~~ 67 (448)
T PRK14357 1 MRALVLAAGKGTRM----KSKIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEA--ELVKKLLPE------WVKIF 67 (448)
T ss_pred CeEEEECCCCCccC----CCCCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCH--HHHHHhccc------ccEEE
Confidence 68999999999999 4578999999999999999999999875 88999988653 466666542 34566
Q ss_pred EcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (362)
.++...|++++++.+++++. .++|++++||. +.+.++.++++.|+++++++|+++.+.. +
T Consensus 68 ~~~~~~g~~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~-----------------~ 130 (448)
T PRK14357 68 LQEEQLGTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE-----------------D 130 (448)
T ss_pred ecCCCCChHHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC-----------------C
Confidence 66677899999999999885 47899999995 7778899999999988999998876543 2
Q ss_pred CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
+..|+++.++ +++ + .+.+ ++. .+.. ....+++++|+|+|++++|..+++
T Consensus 131 ~~~~g~v~~d-~g~-v-~~~e-----~~~-~~~~--------~~~~~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 131 PTGYGRIIRD-GGK-Y-RIVE-----DKD-APEE--------EKKIKEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred CCCcEEEEEc-CCe-E-EEEE-----CCC-CChH--------HhcCcEEEeEEEEEEHHHHHHHHH
Confidence 5578888777 454 3 3432 211 0000 011257899999999999877654
No 47
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.93 E-value=4e-24 Score=210.66 Aligned_cols=227 Identities=21% Similarity=0.306 Sum_probs=162.3
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
|+|||||||.|+||++ .+||+|+|++|+|||+|++++|.++|+++++|++++. .+.+.+++.++ ++.++
T Consensus 1 m~aiIlAaG~g~R~~~----~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~--~~~i~~~~~~~-----~i~~~ 69 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS----DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHG--AEQVRKALANR-----DVNWV 69 (451)
T ss_pred CeEEEEcCCCCcccCC----CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhcCC-----CcEEE
Confidence 6899999999999953 6899999999999999999999999999999998865 34677777642 46666
Q ss_pred EcCCCCCHHHHHHHHHHhcCC-CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019 83 TVPEDVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK 159 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (362)
.+....|++++++.+++++.. ++|+++.||. +.+.++..+++.|.+. .+++++.+.. .
T Consensus 70 ~~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~-----------------~ 130 (451)
T TIGR01173 70 LQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP-----------------D 130 (451)
T ss_pred EcCCCCchHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC-----------------C
Confidence 666678999999999998853 5799999996 6677899999988764 3555554431 1
Q ss_pred CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc----cccchh
Q 018019 160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQ 235 (362)
Q Consensus 160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~----~~s~~~ 235 (362)
+..|+.+.+|+++++ ..+.+++... +.+ ....++++|+|+|++++|..+++.... ....-.
T Consensus 131 ~~~~g~v~~d~~g~v-~~~~ek~~~~-----~~~---------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~ 195 (451)
T TIGR01173 131 PTGYGRIIRENDGKV-TAIVEDKDAN-----AEQ---------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLT 195 (451)
T ss_pred CCCCCEEEEcCCCCE-EEEEEcCCCC-----hHH---------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHH
Confidence 445788888877764 4555321110 000 012568999999999997666543211 011123
Q ss_pred hhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCce--E
Q 018019 236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY--C 313 (362)
Q Consensus 236 d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~ 313 (362)
++++.|++++ .++++|.+ +|| +
T Consensus 196 ~~~~~l~~~g------------------------------------------------------~~v~~~~~--~~~~~~ 219 (451)
T TIGR01173 196 DVIALAVADG------------------------------------------------------ETVRAVQV--DDSDEV 219 (451)
T ss_pred HHHHHHHHCC------------------------------------------------------CeEEEEEc--CChhhe
Confidence 6666665432 35577776 677 7
Q ss_pred EEeCCHHHHHHHhHHHh
Q 018019 314 VRLNSIQAFMDINRDVI 330 (362)
Q Consensus 314 ~rin~~~~Y~~~n~~~l 330 (362)
..+++...|.+++..+.
T Consensus 220 ~~i~t~~dl~~~~~~l~ 236 (451)
T TIGR01173 220 LGVNDRLQLAQLERILQ 236 (451)
T ss_pred ecCCCHHHHHHHHHHHH
Confidence 88999888888776554
No 48
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=5.8e-24 Score=209.74 Aligned_cols=231 Identities=17% Similarity=0.210 Sum_probs=161.9
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
+.|||||||+|+|| ...+||+|+|++|+|||+|++++|...++++++|++++. .+.+.+++.. .++.++
T Consensus 6 ~~aiILAaG~gtR~----~~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~-----~~~~~v 74 (456)
T PRK14356 6 TGALILAAGKGTRM----HSDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHR--ADMVRAAFPD-----EDARFV 74 (456)
T ss_pred eeEEEEcCCCCccC----CCCCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhccc-----cCceEE
Confidence 67999999999999 567999999999999999999999999999999998865 2455555432 356677
Q ss_pred EcCCCCCHHHHHHHHHHhcC---CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCC
Q 018019 83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~ 157 (362)
.++...|++++++.+++++. .+++++++||. +...++..+++.|+ +++++++....+
T Consensus 75 ~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~---------------- 136 (456)
T PRK14356 75 LQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP---------------- 136 (456)
T ss_pred EcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC----------------
Confidence 77777999999999988875 36799999996 56678899998875 566777765543
Q ss_pred CCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccc----cc
Q 018019 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ----SL 233 (362)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~----s~ 233 (362)
++..|+++.. ++|+ +..+.++++..... ....++++++|+|+|++++|..+++...... ..
T Consensus 137 -~~~~~g~v~~-~~g~-V~~~~ek~~~~~~~------------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ 201 (456)
T PRK14356 137 -DPGAYGRVVR-RNGH-VAAIVEAKDYDEAL------------HGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYY 201 (456)
T ss_pred -CCCCceEEEE-cCCe-EEEEEECCCCChHH------------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEE
Confidence 2456788766 4565 45665422111000 0112467899999999999876654321111 11
Q ss_pred hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceE
Q 018019 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 313 (362)
Q Consensus 234 ~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 313 (362)
..|+++.+++.. .++++|...+..++
T Consensus 202 ltd~i~~~~~~g------------------------------------------------------~~v~~~~~~~~~~~ 227 (456)
T PRK14356 202 ITDLVGLAVAEG------------------------------------------------------MNVLGVNCGEDPNL 227 (456)
T ss_pred HHHHHHHHHHCC------------------------------------------------------CeEEEEEcCCcCeE
Confidence 235555544321 35577766333357
Q ss_pred EEeCCHHHHHHHhHHHhh
Q 018019 314 VRLNSIQAFMDINRDVIG 331 (362)
Q Consensus 314 ~rin~~~~Y~~~n~~~l~ 331 (362)
..|||...|.+++..+.+
T Consensus 228 ~~I~tp~dl~~a~~~l~~ 245 (456)
T PRK14356 228 LGVNTPAELVRSEELLRA 245 (456)
T ss_pred ecCcCHHHHHHHHHHHHH
Confidence 899999999988765554
No 49
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=6.4e-24 Score=186.67 Aligned_cols=237 Identities=15% Similarity=0.262 Sum_probs=174.8
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh---------
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------- 73 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~--------- 73 (362)
.+|||+|+|.||||.|. |...||-||||.+||+|+|+++.+..+||+++++|++...+ .+++|+...+
T Consensus 5 rKAViPaAGlGTRfLPA-TKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~--~IeDhFD~s~ELE~~L~~~ 81 (291)
T COG1210 5 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKR--AIEDHFDTSYELENTLEKR 81 (291)
T ss_pred cEEEEEccCcccccccc-cccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcc--hHHHhCcCcHHHHHHHHHh
Confidence 68999999999999999 99999999999999999999999999999999999986643 6777765311
Q ss_pred ------------cCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEEe
Q 018019 74 ------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC 138 (362)
Q Consensus 74 ------------~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~~ 138 (362)
.....+.++.|.++.|.|+|++.|.+++.+++|.|+.+|.+... .+..+++.+.+.+..+..+ .
T Consensus 82 ~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v-~ 160 (291)
T COG1210 82 GKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGV-E 160 (291)
T ss_pred CHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEE-E
Confidence 01234667888999999999999999999999999999965543 3788999998888765443 3
Q ss_pred eeccCCCcccCCCCCccCCCCCCcceEEE----EcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEe
Q 018019 139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIG----MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYA 214 (362)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi 214 (362)
+++.+ +..+||++. .+.+-..+..+.+++..+ ..+|++.-.|-|+
T Consensus 161 ev~~e---------------~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~----------------~APSnlai~GRYi 209 (291)
T COG1210 161 EVPPE---------------DVSKYGVIDPGEPVEKGVYKVKGMVEKPKPE----------------EAPSNLAIVGRYV 209 (291)
T ss_pred ECCHH---------------HCcccceEecCccccCCeEEEEEEEECCCCC----------------CCCcceeeeeeee
Confidence 44311 267899987 232212345565433222 3568999999999
Q ss_pred eCHHHHHHHHhcCcc-cccc-hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCC
Q 018019 215 FNRSVLQEVLDQKDK-FQSL-KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNG 292 (362)
Q Consensus 215 ~s~~vl~~~~~~~~~-~~s~-~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (362)
+++++|+.+-....+ -..+ -.|-|-.|++.
T Consensus 210 l~p~IFd~L~~~~~G~ggEiQLTDai~~L~~~------------------------------------------------ 241 (291)
T COG1210 210 LTPEIFDILEETKPGAGGEIQLTDAIKKLLKK------------------------------------------------ 241 (291)
T ss_pred cCHHHHHHHhhCCCCCCCEeeHHHHHHHHHhh------------------------------------------------
Confidence 999999755332111 1111 23444444433
Q ss_pred CCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 018019 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG 331 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~ 331 (362)
-.+++|.+ +|=.-.+.+...|.++|.++.-
T Consensus 242 -------~~v~a~~~--~GkryD~G~k~Gyi~a~v~~~l 271 (291)
T COG1210 242 -------EPVLAYVF--EGKRYDCGSKLGYIKANVEFAL 271 (291)
T ss_pred -------CcEEEEEe--cccEEccCCcccHHHHHHHHHh
Confidence 24588888 6777788999999999988763
No 50
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.92 E-value=7.5e-24 Score=194.69 Aligned_cols=192 Identities=21% Similarity=0.241 Sum_probs=140.3
Q ss_pred ceEEEEeCCCCCCCCCCCCC-CCCeeeeeeCC-cchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 3 FQVVVLAGGTSKKLVPLVSK-EVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~-~~pK~llpv~g-~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|++||||||.||||+|| |. .+||+|+|++| +|||+|++++|... ++++|+|++++... +.+.+++... ..++
T Consensus 1 m~~vILAgG~GtRl~Pl-S~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~-~~v~~~l~~~---~~~~ 75 (274)
T cd02509 1 IYPVILAGGSGTRLWPL-SRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYR-FLVREQLPEG---LPEE 75 (274)
T ss_pred CEEEEEcccccccCCcC-CCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHH-HHHHHHHhhc---CCCc
Confidence 57999999999999999 64 79999999999 89999999999998 49999999985432 3455566431 1356
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcC----CCcEEEEeCCcccC--CChHHHHHHHHh---cCCeEEEEEeeeccCCCcccCC
Q 018019 80 EVATVPEDVGTAGALRAIAHHLT----AKDVLVVSGDLVSD--VPPGAVTAAHRR---HDAVVTAMICSVPVSGLSEAGS 150 (362)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~----~~~~lv~~~D~i~~--~~l~~~l~~h~~---~~a~~t~l~~~~~~~~~~~~~~ 150 (362)
.++.++...||++++..+...+. ++.++|++||+++. .++.++++.+.+ .++.+|+.+.+..
T Consensus 76 ~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~--------- 146 (274)
T cd02509 76 NIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTR--------- 146 (274)
T ss_pred eEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecC---------
Confidence 77777888999999998877764 35689999997665 456667765543 5677887765432
Q ss_pred CCCccCCCCCCcceEEEEcCCC-c---EEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019 151 SGAKDKTKKPGRYNIIGMDPTK-Q---FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (362)
Q Consensus 151 ~~~~~~~~~~~~~~~v~~d~~~-~---~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~ 226 (362)
....||++..+++. . .+..+.++++.++. .+.+ .-...++++|+|+|++++|...++.
T Consensus 147 --------~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a----~~~~------~~g~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 147 --------PETGYGYIEAGEKLGGGVYRVKRFVEKPDLETA----KEYL------ESGNYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred --------CCCCeEEEEeCCcCCCCceEEeEEEECcChHHH----HHHh------hcCCeEEECceeeeeHHHHHHHHHH
Confidence 14689999998653 1 45677755443221 1111 1123588999999999988777653
No 51
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=7.7e-23 Score=200.33 Aligned_cols=229 Identities=19% Similarity=0.294 Sum_probs=157.0
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|.++|||||||.|+||+ ..+||+|+|++|+|||+|+++.|..+ +++++|++++. .+.+.+++.+.+ .++.
T Consensus 1 m~~~aiIlAaG~GtRl~----~~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~--~~~i~~~~~~~~---~~v~ 70 (430)
T PRK14359 1 MKLSIIILAAGKGTRMK----SSLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQ--KERIKEAVLEYF---PGVI 70 (430)
T ss_pred CCccEEEEcCCCCccCC----CCCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCC--HHHHHHHHHhcC---CceE
Confidence 88999999999999995 47999999999999999999999887 78899988865 357888876532 2566
Q ss_pred EEEcCC--CCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019 81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (362)
Q Consensus 81 i~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (362)
++.+++ ..||+++++.+.. ..++|++++||...- ....++.+.+.++++++.+.+.+
T Consensus 71 ~~~~~~~~~~gt~~al~~~~~--~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~----------------- 129 (430)
T PRK14359 71 FHTQDLENYPGTGGALMGIEP--KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLA----------------- 129 (430)
T ss_pred EEEecCccCCCcHHHHhhccc--CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcC-----------------
Confidence 766543 4799999987432 257899999996321 22445556666777777765532
Q ss_pred CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc----cccch
Q 018019 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSLK 234 (362)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~----~~s~~ 234 (362)
++..|+.+..+ +++ +..+.++....+. ....++.++|+|+|++++|..+.+.... ....-
T Consensus 130 ~~~~~g~v~~d-~g~-v~~i~e~~~~~~~--------------~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l 193 (430)
T PRK14359 130 DPKGYGRVVIE-NGQ-VKKIVEQKDANEE--------------ELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYL 193 (430)
T ss_pred CCccCcEEEEc-CCe-EEEEEECCCCCcc--------------cccceEEEeEEEEEEHHHHHHHHHhcCcccccCceeh
Confidence 14457777665 454 4566532111000 0123678999999999999877543211 11112
Q ss_pred hhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEE
Q 018019 235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCV 314 (362)
Q Consensus 235 ~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 314 (362)
.|+++.+++.+ .++++|..+ .+||.
T Consensus 194 ~d~i~~l~~~g------------------------------------------------------~~v~~~~~~-~~~w~ 218 (430)
T PRK14359 194 TDIIALAIEKG------------------------------------------------------ETIKAVFVD-EENFM 218 (430)
T ss_pred hhHHHHHHHcC------------------------------------------------------CeEEEEEcC-CCEEe
Confidence 35555554321 456777763 36899
Q ss_pred EeCCHHHHHHHhHHHhh
Q 018019 315 RLNSIQAFMDINRDVIG 331 (362)
Q Consensus 315 rin~~~~Y~~~n~~~l~ 331 (362)
.|++..+|+++++.+.+
T Consensus 219 dI~t~~dl~~a~~~l~~ 235 (430)
T PRK14359 219 GVNSKFELAKAEEIMQE 235 (430)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999865554
No 52
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=1.6e-23 Score=206.34 Aligned_cols=182 Identities=24% Similarity=0.365 Sum_probs=140.6
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
+.+||||||.|+||+ ..+||+|+|++|+|||+|+|++|.++|+.+++|++++.. +.+.+++... .++.++
T Consensus 2 ~~~iIlAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~----~~i~~v 71 (450)
T PRK14360 2 LAVAILAAGKGTRMK----SSLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQA--EEVEQSLAHL----PGLEFV 71 (450)
T ss_pred ceEEEEeCCCCccCC----CCCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCH--HHHHHHhccc----CCeEEE
Confidence 679999999999994 478999999999999999999999999999999988653 4677766531 246676
Q ss_pred EcCCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019 83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK 158 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~ 158 (362)
.++...|++++++.+++++. .++++|++||. +.+.++..+++.|++.+++++++..+..
T Consensus 72 ~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~----------------- 134 (450)
T PRK14360 72 EQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP----------------- 134 (450)
T ss_pred EeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC-----------------
Confidence 66667899999999988875 35799999996 7778899999999988888887655432
Q ss_pred CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019 159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (362)
Q Consensus 159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~ 226 (362)
++..|+.+.+|+++++ ..+.+++... +. ...++++++|+|+|++++|..++++
T Consensus 135 ~~~~~g~~~~d~~g~v-~~~~ek~~~~-----~~---------~~~~~~~~~Giy~f~~~~l~~~~~~ 187 (450)
T PRK14360 135 NPKGYGRVFCDGNNLV-EQIVEDRDCT-----PA---------QRQNNRINAGIYCFNWPALAEVLPK 187 (450)
T ss_pred CCCCccEEEECCCCCE-EEEEECCCCC-----hh---------HhcCcEEEEEEEEEEHHHHHHHHhh
Confidence 2456888888888765 5665322110 00 1235789999999999988877654
No 53
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=5e-23 Score=202.56 Aligned_cols=229 Identities=21% Similarity=0.229 Sum_probs=158.0
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|++.|||||||.|+||+ ..+||+|+|++|||||+|++++|.++|+++++|++++. .+.+.+++.... ..+.
T Consensus 4 ~~~~aiILAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~--~~~i~~~~~~~~---~~~~ 74 (446)
T PRK14353 4 RTCLAIILAAGEGTRMK----SSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPG--AEAVAAAAAKIA---PDAE 74 (446)
T ss_pred ccceEEEEcCCCCCccC----CCCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCC--HHHHHHHhhccC---CCce
Confidence 45789999999999994 46899999999999999999999999999999999865 346777765421 1344
Q ss_pred EEEcCCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019 81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK 156 (362)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~ 156 (362)
++.+....|++++++.+++++. .+++++++||. +...++..+++. .+.+++++++..+..
T Consensus 75 ~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~-~~~~~~~~i~~~~~~--------------- 138 (446)
T PRK14353 75 IFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRER-LADGADVVVLGFRAA--------------- 138 (446)
T ss_pred EEEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHh-HhcCCcEEEEEEEeC---------------
Confidence 5555667899999999988874 46799999995 556678888874 455677777655432
Q ss_pred CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc----ccc
Q 018019 157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQS 232 (362)
Q Consensus 157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~----~~s 232 (362)
++..|+.+.. ++++ +..+.+++..+. . .....+.++|+|+|+++.|..++++... -..
T Consensus 139 --~~~~~g~~~~-~~g~-v~~~~ek~~~~~-----~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~ 200 (446)
T PRK14353 139 --DPTGYGRLIV-KGGR-LVAIVEEKDASD-----E---------ERAITLCNSGVMAADGADALALLDRVGNDNAKGEY 200 (446)
T ss_pred --CCCcceEEEE-CCCe-EEEEEECCCCCh-----H---------HhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcE
Confidence 2456777776 4454 456653221100 0 0112578899999999877666543211 001
Q ss_pred chhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCce
Q 018019 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY 312 (362)
Q Consensus 233 ~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 312 (362)
.-.|.++.+++.+ .++++|..+ .++
T Consensus 201 ~~~d~~~~l~~~g------------------------------------------------------~~v~~~~~~-~~~ 225 (446)
T PRK14353 201 YLTDIVAIARAEG------------------------------------------------------LRVAVVEAP-EDE 225 (446)
T ss_pred eHHHHHHHHHHCC------------------------------------------------------CeEEEEecC-hhh
Confidence 1235556655432 356777653 257
Q ss_pred EEEeCCHHHHHHHhH
Q 018019 313 CVRLNSIQAFMDINR 327 (362)
Q Consensus 313 ~~rin~~~~Y~~~n~ 327 (362)
|..|.++..|.+++.
T Consensus 226 ~~~I~t~~dl~~a~~ 240 (446)
T PRK14353 226 VRGINSRAELAEAEA 240 (446)
T ss_pred cccCCCHHHHHHHHH
Confidence 899999999988874
No 54
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.90 E-value=4.5e-22 Score=178.29 Aligned_cols=179 Identities=28% Similarity=0.408 Sum_probs=135.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~ 84 (362)
|||||||.|+||+ ..+||+|+|++|+|||+|++++|.++|+++|+|++++. .+.+.+++.. .++.++.+
T Consensus 1 aiIlaaG~g~R~~----~~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~--~~~i~~~~~~-----~~~~~~~~ 69 (229)
T cd02540 1 AVILAAGKGTRMK----SDLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHG--AEQVKKALAN-----PNVEFVLQ 69 (229)
T ss_pred CEEEeCCCCccCC----CCCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhCC-----CCcEEEEC
Confidence 6999999999995 36899999999999999999999999999999999865 3467666653 45667766
Q ss_pred CCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCC
Q 018019 85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP 160 (362)
Q Consensus 85 ~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (362)
+...|++++++.++..+. .++|+++.||. +...++..+++.|.+.++++++++.+.. .+
T Consensus 70 ~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-----------------~p 132 (229)
T cd02540 70 EEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE-----------------DP 132 (229)
T ss_pred CCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC-----------------CC
Confidence 667899999999999886 46799999996 5577899999999887777777655432 14
Q ss_pred CcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019 161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ 226 (362)
Q Consensus 161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~ 226 (362)
..|+.+..++++++ ..+.+ ++. .... .....++++|+|+|+++.|..+++.
T Consensus 133 ~~~~~~~~~~~~~v-~~~~e-----k~~-~~~~--------~~~~~~~~~giy~~~~~~~~~~l~~ 183 (229)
T cd02540 133 TGYGRIIRDGNGKV-LRIVE-----EKD-ATEE--------EKAIREVNAGIYAFDAEFLFEALPK 183 (229)
T ss_pred CCccEEEEcCCCCE-EEEEE-----CCC-CChH--------HHhhceEEeEEEEEEHHHHHHHHHH
Confidence 56777777776764 45543 211 0000 0113678999999999877666654
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.86 E-value=1.2e-20 Score=185.36 Aligned_cols=191 Identities=21% Similarity=0.220 Sum_probs=132.6
Q ss_pred ceEEEEeCCCCCCCCCCCCCC-CCeeeeeeCC-cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcc-e
Q 018019 3 FQVVVLAGGTSKKLVPLVSKE-VPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH-V 79 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~-~pK~llpv~g-~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~-i 79 (362)
|.+||||||.||||+|| |.. +||+|+|+.| +|||+|+++.|...++++++|+++..+ ...+.+.+... ... .
T Consensus 1 ~~~vILAgG~GtRl~Pl-S~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~-~~~~~~~l~~~---~~~~~ 75 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPL-SRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEH-RFIVAEQLREI---GKLAS 75 (468)
T ss_pred CEEEEecCcccccCCcc-ccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHH-HHHHHHHHHHc---CCCcc
Confidence 57999999999999999 664 8999999977 899999999999999999999988432 22444445432 112 3
Q ss_pred EEEEcCCCCCHHHHHHHHHHhc----CCC-cEEEEeCCccc-C-CChHHHHHHH---HhcCCeEEEEEeeeccCCCcccC
Q 018019 80 EVATVPEDVGTAGALRAIAHHL----TAK-DVLVVSGDLVS-D-VPPGAVTAAH---RRHDAVVTAMICSVPVSGLSEAG 149 (362)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i----~~~-~~lv~~~D~i~-~-~~l~~~l~~h---~~~~a~~t~l~~~~~~~~~~~~~ 149 (362)
.++.++...|||+++..+...+ ..+ .++|++||.+. + .+|.++++.+ .+.++.+|+...+..
T Consensus 76 ~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~-------- 147 (468)
T TIGR01479 76 NIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTH-------- 147 (468)
T ss_pred eEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCC--------
Confidence 4677788899999988765555 323 48999999544 3 3588887765 344566666554321
Q ss_pred CCCCccCCCCCCcceEEEEcCC----C-cEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHH
Q 018019 150 SSGAKDKTKKPGRYNIIGMDPT----K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL 224 (362)
Q Consensus 150 ~~~~~~~~~~~~~~~~v~~d~~----~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~ 224 (362)
....||++..++. + ..+..+.++++.+.. ...+ ...+.++|+|||+|+.+.|...+
T Consensus 148 ---------p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a----~~~l------~~g~~~wNsGif~~~~~~ll~~l 208 (468)
T TIGR01479 148 ---------PETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATA----QAYL------ESGDYYWNSGMFLFRASRYLAEL 208 (468)
T ss_pred ---------CCCCceEEEeCCccCCCCceEEeEEEECCChHHH----HHHH------hcCCeEEEeeEEEEEHHHHHHHH
Confidence 2468999998842 1 245677765443221 1111 11236899999999999887666
Q ss_pred h
Q 018019 225 D 225 (362)
Q Consensus 225 ~ 225 (362)
.
T Consensus 209 ~ 209 (468)
T TIGR01479 209 K 209 (468)
T ss_pred H
Confidence 4
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.86 E-value=7.1e-20 Score=165.92 Aligned_cols=186 Identities=18% Similarity=0.261 Sum_probs=125.2
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|++.+||||+|.|+|| . +|+|+|++|+|||+|+++.|..+|+++|+|++++ +.+.+++.. .++.
T Consensus 1 m~~~~iIlA~g~S~R~----~---~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~----~~i~~~~~~-----~~~~ 64 (245)
T PRK05450 1 MKFLIIIPARYASTRL----P---GKPLADIGGKPMIVRVYERASKAGADRVVVATDD----ERIADAVEA-----FGGE 64 (245)
T ss_pred CceEEEEecCCCCCCC----C---CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc----HHHHHHHHH-----cCCE
Confidence 8899999999999999 3 5999999999999999999999999999998863 356666643 2344
Q ss_pred EEE--cCCCCCHHHHHHHHHHhc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCC
Q 018019 81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (362)
Q Consensus 81 i~~--~~~~~gt~~al~~~~~~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~ 153 (362)
++. ++...|++.... +...+ ..+.++++.||. +...++..+++.|+.+++++++++.+.. ++..
T Consensus 65 v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~--~~~~------ 135 (245)
T PRK05450 65 VVMTSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIH--DAEE------ 135 (245)
T ss_pred EEECCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecC--CHHH------
Confidence 443 233467765443 33333 234588899995 5667899999998877667666655431 1111
Q ss_pred ccCCCCCCcceEEEEcCCCcEEEEeecCcccc-cccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELE-KDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~e-k~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
...++.++++ +|++|++ ..+.+++..+ +.. .+.-...+++.++|+|+|++++|..+.+
T Consensus 136 ---~~~~~~~~v~-~d~~g~v-~~~~e~~~~~~~~~---------~~~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 136 ---AFNPNVVKVV-LDADGRA-LYFSRAPIPYGRDA---------FADSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred ---hcCcCCCEEE-eCCCCcE-EEecCCCCCCCCCc---------cccccCccccEEEEEEecCHHHHHHHHh
Confidence 1125566655 8887775 4565332111 000 0000013589999999999999987764
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.85 E-value=1.2e-19 Score=163.90 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=123.9
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i 81 (362)
+.+||||+|.|+|| . ||+|+|++|+|||+|++++|..+ |+++|+|++++ +.+.+++.. .++.+
T Consensus 2 ~~~iIlA~g~s~R~----~---~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~----~~i~~~~~~-----~~~~~ 65 (239)
T cd02517 2 VIVVIPARYASSRL----P---GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD----ERIADAVES-----FGGKV 65 (239)
T ss_pred EEEEEecCCCCCCC----C---CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHH-----cCCEE
Confidence 57899999999999 3 69999999999999999999998 89999998873 356666653 24555
Q ss_pred EEcC--CCCCHHHHHHHHHHhcCC--CcEEEEeCC--cccCCChHHHHHHHHhc-CCeEEEEEeeeccCCCcccCCCCCc
Q 018019 82 ATVP--EDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSGAK 154 (362)
Q Consensus 82 ~~~~--~~~gt~~al~~~~~~i~~--~~~lv~~~D--~i~~~~l~~~l~~h~~~-~a~~t~l~~~~~~~~~~~~~~~~~~ 154 (362)
+... ...|+++ +..+...+.. +.+++++|| ++...++..+++.|... ++++++++.+.. ++...
T Consensus 66 ~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~------ 136 (239)
T cd02517 66 VMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPIS--DEEEL------ 136 (239)
T ss_pred EEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcC--CHHHc------
Confidence 5433 3467775 5556565653 669999999 56678899999988766 677887776542 11100
Q ss_pred cCCCCCCcceEEEEcCCCcEEEEeecCc--ccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 155 DKTKKPGRYNIIGMDPTKQFLLHIATGA--ELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~--~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
.....++ +.++++|++ ..+.+++ +.+++ . ...+.+.++|+|+|++++|..+..
T Consensus 137 ---~~~~~~~-v~~~~~~~v-~~~~~~~~~~~~~~------------~-~~~~~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 137 ---FNPNVVK-VVLDKDGYA-LYFSRSPIPYPRDS------------S-EDFPYYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred ---cCCCCCE-EEECCCCCE-EEecCCCCCCCCCC------------C-CCCceeEEEEEEEECHHHHHHHHh
Confidence 0122333 456766764 4554211 10110 0 112468999999999999987754
No 58
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.82 E-value=1.8e-18 Score=155.96 Aligned_cols=181 Identities=21% Similarity=0.293 Sum_probs=121.4
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|++.|||||+|.|+|| . +|+|+|++|+|||+|+++.+.++ ++++|+|++++ +.+.+++..+ ++
T Consensus 1 m~~~aiIlA~g~s~R~----~---~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~----~~i~~~~~~~-----~~ 64 (238)
T PRK13368 1 MKVVVVIPARYGSSRL----P---GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD----QRIEDAVEAF-----GG 64 (238)
T ss_pred CcEEEEEecCCCCCCC----C---CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh----HHHHHHHHHc-----CC
Confidence 7888999999999999 3 39999999999999999999998 89999999873 3566666542 34
Q ss_pred EEEEcC--CCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCC-eEEEEEeeeccCCCcccCCCCCc
Q 018019 80 EVATVP--EDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA-VVTAMICSVPVSGLSEAGSSGAK 154 (362)
Q Consensus 80 ~i~~~~--~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a-~~t~l~~~~~~~~~~~~~~~~~~ 154 (362)
.++... ...|++ .+..+...+..+.|+++.|| ++.+.++..+++.|...+. ++++++...+. +..
T Consensus 65 ~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~------- 134 (238)
T PRK13368 65 KVVMTSDDHLSGTD-RLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPIST--EEE------- 134 (238)
T ss_pred eEEecCccCCCccH-HHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCC--HHH-------
Confidence 444432 335666 46667666655679999999 6878899999999876543 55555543321 000
Q ss_pred cCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHH
Q 018019 155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV 223 (362)
Q Consensus 155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~ 223 (362)
...+..+++ .++++|++ ..+.+ ++...+++ + ...+.+.++|+|+|++++|..+
T Consensus 135 --~~~p~~~~~-~~~~~g~v-~~~~~-----~~~~~~~~-----~--~~~~~~~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 135 --FESPNVVKV-VVDKNGDA-LYFSR-----SPIPSRRD-----G--ESARYLKHVGIYAFRRDVLQQF 187 (238)
T ss_pred --hcCcCCCEE-EECCCCCE-EEeeC-----CCCCCCCC-----C--CCCceeEEEEEEEeCHHHHHHH
Confidence 001333344 44566764 45542 11100000 0 0113578999999999999865
No 59
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.74 E-value=6.1e-17 Score=158.05 Aligned_cols=194 Identities=20% Similarity=0.202 Sum_probs=130.1
Q ss_pred CCceEEEEeCCCCCCCCCCCCCC-CCeeeeeeCC-cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcc
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKE-VPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH 78 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~-~pK~llpv~g-~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~ 78 (362)
|.|.+||||||.||||+|+ +.. .||+|+|++| +|||+++++++...++.+.+|+++..+ .+.+.+.+... . ...
T Consensus 4 ~~~~~vIlaGG~GtRlwPl-S~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~-~~~v~~ql~~~-~-~~~ 79 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPL-SRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQH-RFIVAEQLRQL-N-KLT 79 (478)
T ss_pred CceEEEEECCCCccccccC-CCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHH-HHHHHHHHHhc-C-Ccc
Confidence 6789999999999999999 554 7999999966 699999999999888888878887543 34555555431 0 012
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcC------CCcEEEEeCCccc-CC-ChHHHHHHHH---hcCCeEEEEEeeeccCCCcc
Q 018019 79 VEVATVPEDVGTAGALRAIAHHLT------AKDVLVVSGDLVS-DV-PPGAVTAAHR---RHDAVVTAMICSVPVSGLSE 147 (362)
Q Consensus 79 i~i~~~~~~~gt~~al~~~~~~i~------~~~~lv~~~D~i~-~~-~l~~~l~~h~---~~~a~~t~l~~~~~~~~~~~ 147 (362)
..++.++..++|+.++..+...+. +.-++|+++|.+. +. .|.+.++... +.+.-+|+-..+..
T Consensus 80 ~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~------ 153 (478)
T PRK15460 80 ENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL------ 153 (478)
T ss_pred ccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCC------
Confidence 357778888999988876644442 2347899999654 42 2444444332 23555555443321
Q ss_pred cCCCCCccCCCCCCcceEEEEcCC-------C-cEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHH
Q 018019 148 AGSSGAKDKTKKPGRYNIIGMDPT-------K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV 219 (362)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~v~~d~~-------~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~v 219 (362)
..+.||++..++. + ..+..|.++++.+.. +.++. -...++|+|||+|+.++
T Consensus 154 -----------PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA----~~yl~------~G~y~WNsGiF~~~a~~ 212 (478)
T PRK15460 154 -----------PETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETA----QAYVA------SGEYYWNSGMFLFRAGR 212 (478)
T ss_pred -----------CCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHH----HHHHH------cCCEEEecceeheeHHH
Confidence 2568999987642 1 245677766655432 22221 13468999999999988
Q ss_pred HHHHHh
Q 018019 220 LQEVLD 225 (362)
Q Consensus 220 l~~~~~ 225 (362)
|..-++
T Consensus 213 ~l~~~~ 218 (478)
T PRK15460 213 YLEELK 218 (478)
T ss_pred HHHHHH
Confidence 865554
No 60
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=8.2e-17 Score=145.13 Aligned_cols=194 Identities=24% Similarity=0.260 Sum_probs=132.7
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCC-cchHHHHHHHHHh-CCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g-~plI~~~l~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|..||||||.||||+||+...+||+++.+.| +.|+..++.++.. .+.++++|+|+..+. ..+.+.+.+.......-
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~-f~v~eql~e~~~~~~~~- 79 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYR-FIVKEQLPEIDIENAAG- 79 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHH-HHHHHHHhhhhhccccc-
Confidence 6899999999999999998999999999965 8999999999988 678999999995543 45555555321111122
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCC----CcEEEEeCCcccCC--ChHHHHHHHH---hcCCeEEEEEeeeccCCCcccCCC
Q 018019 81 VATVPEDVGTAGALRAIAHHLTA----KDVLVVSGDLVSDV--PPGAVTAAHR---RHDAVVTAMICSVPVSGLSEAGSS 151 (362)
Q Consensus 81 i~~~~~~~gt~~al~~~~~~i~~----~~~lv~~~D~i~~~--~l~~~l~~h~---~~~a~~t~l~~~~~~~~~~~~~~~ 151 (362)
++.++..+.|+.|+..+.-.+.. .-++|+++|++... .+.+.++... +.+.-+|....+..
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~---------- 149 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTR---------- 149 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCC----------
Confidence 77778889999999877544432 23889999975543 2544444332 34555555443321
Q ss_pred CCccCCCCCCcceEEEEcC-----CCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 152 GAKDKTKKPGRYNIIGMDP-----TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 152 ~~~~~~~~~~~~~~v~~d~-----~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
..+.||+|...+ .+..+-.+.++++.+.. ++.+. -...++|+|+|+|+..++..-++
T Consensus 150 -------PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA----~~yv~------sG~y~WNSGmF~Fra~~~l~e~~ 211 (333)
T COG0836 150 -------PETGYGYIETGESIAENGVYKVDRFVEKPDLETA----KKYVE------SGEYLWNSGMFLFRASVFLEELK 211 (333)
T ss_pred -------CccCcceeecCcccccCCceEeeeeeeCCCHHHH----HHHHH------cCceEeeccceEEEHHHHHHHHH
Confidence 256899998754 34456677766655442 22222 23479999999999988754443
No 61
>PLN02917 CMP-KDO synthetase
Probab=99.71 E-value=2.2e-15 Score=139.41 Aligned_cols=200 Identities=13% Similarity=0.128 Sum_probs=126.2
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCC-CeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNI-KDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|++.+||+|+|.|+|| . +|+|+|++|+|||+|+++.+..++. +.|+|.+. .+.+.+++.. .++
T Consensus 46 ~~i~aIIpA~G~SsR~----~---~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~----~e~I~~~~~~-----~~v 109 (293)
T PLN02917 46 SRVVGIIPARFASSRF----E---GKPLVHILGKPMIQRTWERAKLATTLDHIVVATD----DERIAECCRG-----FGA 109 (293)
T ss_pred CcEEEEEecCCCCCCC----C---CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECC----hHHHHHHHHH-----cCC
Confidence 6678999999999999 3 3999999999999999999998764 55444433 2466666653 245
Q ss_pred EEEEc--CCCCCHHHHHHHHHHhcC--CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCC
Q 018019 80 EVATV--PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA 153 (362)
Q Consensus 80 ~i~~~--~~~~gt~~al~~~~~~i~--~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~ 153 (362)
.++.. ....||+++ ..+.+.+. .+.++++.|| ++....+..+++.+.+. ++++++..-.+. ++
T Consensus 110 ~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~-~~-------- 178 (293)
T PLN02917 110 DVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL-KP-------- 178 (293)
T ss_pred EEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeec-CH--------
Confidence 55543 334677765 56777774 3568999999 68888899999988654 333332221111 11
Q ss_pred ccCCCCCCcceEEE--EcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccc
Q 018019 154 KDKTKKPGRYNIIG--MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ 231 (362)
Q Consensus 154 ~~~~~~~~~~~~v~--~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~ 231 (362)
+++..|+.+. .|++|+.+++.+.-...+++.... .-.-.+.++|||+|+++.|..+ ..-..-.
T Consensus 179 ----~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~----------~~~i~~~n~Giy~f~~~~L~~l-~~l~~~n 243 (293)
T PLN02917 179 ----EDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDAKFLKIY-PELPPTP 243 (293)
T ss_pred ----HHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccc----------cccceEEEEEEEEeCHHHHHHH-HcCCCCc
Confidence 1256677774 687787554432211112221000 0112578999999999999855 4322223
Q ss_pred cchhhhhhHHH
Q 018019 232 SLKQDVLPYLV 242 (362)
Q Consensus 232 s~~~d~ip~l~ 242 (362)
.-++..|+.|+
T Consensus 244 ~e~e~yLtdl~ 254 (293)
T PLN02917 244 LQLEEDLEQLK 254 (293)
T ss_pred ccchhccHHHH
Confidence 34566677765
No 62
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=4.5e-16 Score=134.92 Aligned_cols=108 Identities=23% Similarity=0.374 Sum_probs=87.8
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
|+|||||||.|+||.| +.||||+.++||++|+|++++|.++|+++++||+.... .+-+.++++.+ .+...++
T Consensus 4 ~kavILAAG~GsRlg~----~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~-~~lve~~l~~~---~~~~~iv 75 (239)
T COG1213 4 MKAVILAAGFGSRLGP----DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYR-ADLVEEFLKKY---PFNAKIV 75 (239)
T ss_pred eeEEEEecccccccCC----CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccch-HHHHHHHHhcC---CcceEEE
Confidence 7899999999999954 79999999999999999999999999999999994332 45666766653 2356666
Q ss_pred EcCC--CCCHHHHHHHHHHhcCCCcEEEEeCCcccCCCh
Q 018019 83 TVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPP 119 (362)
Q Consensus 83 ~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l 119 (362)
+.+. ..+++.+|..+.+++. +.|++++||+++...+
T Consensus 76 ~N~~y~ktN~~~Sl~~akd~~~-~~fii~~sD~vye~~~ 113 (239)
T COG1213 76 INSDYEKTNTGYSLLLAKDYMD-GRFILVMSDHVYEPSI 113 (239)
T ss_pred eCCCcccCCceeEEeeehhhhc-CcEEEEeCCEeecHHH
Confidence 6544 3566899999999985 5699999999887553
No 63
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.68 E-value=3e-16 Score=132.65 Aligned_cols=119 Identities=28% Similarity=0.437 Sum_probs=96.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~ 84 (362)
|||||||.|+|| +.||+|+|++|+|||+|+++.+..+++++|+|++++. .+..++. +.++.++..
T Consensus 1 ~vILa~G~s~Rm------g~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~~----~~~~~~~-----~~~~~~v~~ 65 (160)
T PF12804_consen 1 AVILAAGKSSRM------GGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGEE----EIYEYLE-----RYGIKVVVD 65 (160)
T ss_dssp EEEEESSSCGGG------TSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEESTH----HHHHHHT-----TTTSEEEE-
T ss_pred CEEECCcCcccC------CCCccceeECCccHHHHHHHHhhccCCceEEEecChH----HHHHHHh-----ccCceEEEe
Confidence 799999999999 3499999999999999999999999999999999852 4444443 346777765
Q ss_pred C-CCCCHHHHHHHHHHhc-CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEe
Q 018019 85 P-EDVGTAGALRAIAHHL-TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMIC 138 (362)
Q Consensus 85 ~-~~~gt~~al~~~~~~i-~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~ 138 (362)
+ ...|++++++.+...+ ..++|++++||+ +....+..+++.+.+.+++++++..
T Consensus 66 ~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 66 PEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 4 3589999999999988 678899999997 4466789999998877777766543
No 64
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.65 E-value=3.6e-15 Score=128.72 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=94.1
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
|.|||||||+|+||. ..||+|+|++|+|||+|+++++..+++++|+|++++. .+.+..++... ...+.
T Consensus 1 m~aIILAgG~gsRmg-----~~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~--~~~~~~~l~~~-----~~~~~ 68 (183)
T TIGR00454 1 MDALIMAGGKGTRLG-----GVEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPH--TPKTEEYINSA-----YKDYK 68 (183)
T ss_pred CeEEEECCccCccCC-----CCCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHhhc-----CcEEE
Confidence 579999999999993 2789999999999999999999999999999999864 24566666542 12222
Q ss_pred EcCCCCCHHHHHHHHHHhcC-CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEE
Q 018019 83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMI 137 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~ 137 (362)
.....|...++..+++.+. .++|+++.|| ++....+..+++.+...+.....++
T Consensus 69 -~~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~ 125 (183)
T TIGR00454 69 -NASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVM 125 (183)
T ss_pred -ecCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 2456788888888877543 5789999999 4678889999998876554444433
No 65
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.64 E-value=2e-14 Score=129.47 Aligned_cols=184 Identities=16% Similarity=0.195 Sum_probs=116.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~ 84 (362)
+||+|+|.|+|| . +|+|++++|+|||.|+++++..+++++|+|++.. +.+.+++.. .++.++..
T Consensus 2 ~iIpA~g~s~R~----~---~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~----~~i~~~~~~-----~g~~~v~~ 65 (238)
T TIGR00466 2 VIIPARLASSRL----P---GKPLEDIFGKPMIVHVAENANESGADRCIVATDD----ESVAQTCQK-----FGIEVCMT 65 (238)
T ss_pred EEEecCCCCCCC----C---CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH----HHHHHHHHH-----cCCEEEEe
Confidence 799999999999 3 5999999999999999999998899999999873 355555543 24444442
Q ss_pred C--CCCCHHHHHHHHHHhc---CCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCC
Q 018019 85 P--EDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT 157 (362)
Q Consensus 85 ~--~~~gt~~al~~~~~~i---~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~ 157 (362)
. ...|+ +.+..+...+ ..+.++++.|| ++.+..+..+++.+.+.+.+++.+..+.. ++.+..
T Consensus 66 ~~~~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~--d~~~~~-------- 134 (238)
T TIGR00466 66 SKHHNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIH--DAEEAF-------- 134 (238)
T ss_pred CCCCCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecC--CHHHcc--------
Confidence 2 22343 3444444433 23457889999 68888899999988655566665555432 221111
Q ss_pred CCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHh--hcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019 158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILR--AVGQMDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~--~~~~~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
..+...++.|.+|+.+++.+. .+...++.++ ..|.. ...+.+.|||.|+++.|..|..
T Consensus 135 --~p~~vk~v~~~~g~alyfsr~------~ip~~R~~~~~~~tpq~--~~~~~h~Giy~~~~~~L~~~~~ 194 (238)
T TIGR00466 135 --NPNAVKVVLDSQGYALYFSRS------LIPFDRDFFAKRQTPVG--DNLLRHIGIYGYRAGFIEEYVA 194 (238)
T ss_pred --CCCceEEEeCCCCeEEEecCC------CCCCCCCcccccccccc--cceeEEEEEEeCCHHHHHHHHh
Confidence 112233455777766544332 1111111111 11211 1257799999999999998865
No 66
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=7e-16 Score=128.35 Aligned_cols=104 Identities=23% Similarity=0.410 Sum_probs=86.5
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
|.|||||||.||||.|| |..+||+|+.|.|+|||++.++.|.++||++|+||+++.. +++ +++++ +.++.++
T Consensus 1 ~nAIIlAAG~gsR~~pl-T~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlk--E~F-eYLkd----Ky~vtLv 72 (231)
T COG4750 1 MNAIILAAGLGSRFVPL-TQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLK--EQF-EYLKD----KYDVTLV 72 (231)
T ss_pred CceEEEecccccccccc-cccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehH--HHH-HHHHH----hcCeEEE
Confidence 57999999999999999 9999999999999999999999999999999999999652 233 55654 4578888
Q ss_pred EcCCC--CCHHHHHHHHHHhcCCCcEEEEeCCcccC
Q 018019 83 TVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSD 116 (362)
Q Consensus 83 ~~~~~--~gt~~al~~~~~~i~~~~~lv~~~D~i~~ 116 (362)
..+.. ....-++..+++++. +..|+.+|....
T Consensus 73 yN~kY~~yNn~ySlyla~d~l~--ntYiidsDnyl~ 106 (231)
T COG4750 73 YNPKYREYNNIYSLYLARDFLN--NTYIIDSDNYLT 106 (231)
T ss_pred eCchHHhhhhHHHHHHHHHHhc--ccEEeccchHhh
Confidence 76653 566788999999985 456779996543
No 67
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.57 E-value=3.8e-14 Score=117.29 Aligned_cols=110 Identities=26% Similarity=0.424 Sum_probs=89.5
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
|.+||+|||+|+||. . .-|||++++|||||+|+++.|.+ .+++++++++.+. ..++.++.++ +++++
T Consensus 1 m~~iiMAGGrGtRmg----~-~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~t--p~t~~~~~~~-----gv~vi 67 (177)
T COG2266 1 MMAIIMAGGRGTRMG----R-PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHT--PKTKEYLESV-----GVKVI 67 (177)
T ss_pred CceEEecCCcccccC----C-CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCC--HhHHHHHHhc-----CceEE
Confidence 569999999999994 2 34999999999999999999988 7899999998663 4677777753 56676
Q ss_pred EcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHH
Q 018019 83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHR 127 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~ 127 (362)
..+ ..|-..-++.+.+.+. .++|++++|+ +.+..+..+++.+.
T Consensus 68 ~tp-G~GYv~Dl~~al~~l~-~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 68 ETP-GEGYVEDLRFALESLG-TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EcC-CCChHHHHHHHHHhcC-CceEEEecccccCCHHHHHHHHHHHh
Confidence 543 4678899999999985 4999999995 44566788888776
No 68
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=1e-13 Score=118.81 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=131.9
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|++.+||+|.-.+||| .. |||-.|+|+|||.|+.++..++|.++|+|.+.+ +++.+.+.. .|.+
T Consensus 2 ~~~~viIPAR~~STRL----pg---KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd----e~I~~av~~-----~G~~ 65 (247)
T COG1212 2 MKFVVIIPARLASTRL----PG---KPLADIGGKPMIVRVAERALKSGADRVVVATDD----ERIAEAVQA-----FGGE 65 (247)
T ss_pred CceEEEEecchhcccC----CC---CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC----HHHHHHHHH-----hCCE
Confidence 7788999999999999 44 999999999999999999999999999999984 467777764 3566
Q ss_pred EEEcCCCCCHH-HHHHHHHHhcC-C--CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCc
Q 018019 81 VATVPEDVGTA-GALRAIAHHLT-A--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAK 154 (362)
Q Consensus 81 i~~~~~~~gt~-~al~~~~~~i~-~--~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~ 154 (362)
.+.......+| +.+.++.+.+. . +.++-+.|| +|.+..+..+++...+.+++|..+..+.. ++.+..
T Consensus 66 avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~--~~ee~~----- 138 (247)
T COG1212 66 AVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKIT--DEEEAF----- 138 (247)
T ss_pred EEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecC--CHHHhc-----
Confidence 66655444333 67777766664 2 346667799 67778888898888877777655554432 233321
Q ss_pred cCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc
Q 018019 155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD 228 (362)
Q Consensus 155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~ 228 (362)
..+-.-++.|.+|+.|++.++......+ . . .....+...|||.|++.+|..|..-.+
T Consensus 139 -----nPN~VKvV~d~~g~ALYFSRs~iP~~rd------~--~----~~~p~l~HIGIYayr~~~L~~f~~~~p 195 (247)
T COG1212 139 -----NPNVVKVVLDKEGYALYFSRAPIPYGRD------N--F----GGTPFLRHIGIYAYRAGFLERFVALKP 195 (247)
T ss_pred -----CCCcEEEEEcCCCcEEEEEcCCCCCccc------c--c----CCcchhheeehHHhHHHHHHHHHhcCC
Confidence 2233446788888887666542211110 0 0 002367789999999999998876443
No 69
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.56 E-value=3.4e-13 Score=119.84 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=86.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~ 83 (362)
|||||||.|+|| ....||+|++++|+|||+|+++++..+ ++++++|++++... +.+...+.. ...+.++.
T Consensus 2 aiIlAaG~s~R~----~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~~----~~~~~~~~ 72 (217)
T TIGR00453 2 AVIPAAGRGTRF----GSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQ-EFFQKYLVA----RAVPKIVA 72 (217)
T ss_pred EEEEcCcccccC----CCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHH-HHHHHHhhc----CCcEEEeC
Confidence 799999999999 445799999999999999999999998 79999999985321 233332321 11233332
Q ss_pred cCCCCCHHHHHHHHHHhc-CCCcEEEEeCC--cccCCChHHHHHHHHhcC
Q 018019 84 VPEDVGTAGALRAIAHHL-TAKDVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (362)
Q Consensus 84 ~~~~~gt~~al~~~~~~i-~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~ 130 (362)
...+..++++.++..+ ..+.++++.|| ++....+..+++.+.+.+
T Consensus 73 --~~~~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 120 (217)
T TIGR00453 73 --GGDTRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAG 120 (217)
T ss_pred --CCchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 2234668899888877 45679999999 577888999999886643
No 70
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.56 E-value=6.4e-14 Score=121.05 Aligned_cols=118 Identities=27% Similarity=0.345 Sum_probs=90.0
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
+.+||||||.|+||. .||+|+|++|+|||+|+++.+...++++|+|+++... ..+.+++. ..++.++
T Consensus 1 ~~~vIlAgG~s~R~g------~~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~--~~~~~~~~-----~~~~~~~ 67 (186)
T cd04182 1 IAAIILAAGRSSRMG------GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEA--DAVRAALA-----GLPVVVV 67 (186)
T ss_pred CeEEEECCCCCCCCC------CCceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcH--HHHHHHhc-----CCCeEEE
Confidence 358999999999993 2899999999999999999999989999999998542 23333332 2345444
Q ss_pred EcC-CCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeE
Q 018019 83 TVP-EDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV 133 (362)
Q Consensus 83 ~~~-~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~ 133 (362)
..+ ...|++++++.+++.+. .+.++++.||+ +....+..+++.+...++++
T Consensus 68 ~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 123 (186)
T cd04182 68 INPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGI 123 (186)
T ss_pred eCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 433 34799999999988886 56799999995 66677888888876555443
No 71
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.53 E-value=1.2e-13 Score=119.76 Aligned_cols=120 Identities=16% Similarity=0.245 Sum_probs=90.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~ 84 (362)
+||||||.|+|| +.||+|+|++|+|||+|+++.+.++++++|+|++++.. +.+...+. ...++.++..
T Consensus 2 ~iIla~G~s~R~------g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~--~~~~~~~~----~~~~v~~v~~ 69 (188)
T TIGR03310 2 AIILAAGLSSRM------GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEA--DELVALLA----NHSNITLVHN 69 (188)
T ss_pred eEEECCCCcccC------CCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcH--HHHHHHhc----cCCCeEEEEC
Confidence 799999999999 35899999999999999999999889999999998653 22222222 1245666654
Q ss_pred CC-CCCHHHHHHHHHH-hcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEE
Q 018019 85 PE-DVGTAGALRAIAH-HLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAM 136 (362)
Q Consensus 85 ~~-~~gt~~al~~~~~-~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l 136 (362)
.. ..|++++++.+++ ....+.++++.||. +....+..+++.+...+..+++.
T Consensus 70 ~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~ 125 (188)
T TIGR03310 70 PQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP 125 (188)
T ss_pred cChhcCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence 33 3688999998887 23346799999995 66677899998887666555443
No 72
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.51 E-value=4.1e-13 Score=119.68 Aligned_cols=123 Identities=13% Similarity=0.161 Sum_probs=90.7
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i 81 (362)
+.+||||||.|+|| . +|+|+|++|+|||+|+++.+..++ +++|+|++.. +.+.+++... ...+.+
T Consensus 2 ~~~iIlA~G~s~R~----~---~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~----~~i~~~~~~~---~~~~~~ 67 (223)
T cd02513 2 ILAIIPARGGSKGI----P---GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDD----EEIAEVARKY---GAEVPF 67 (223)
T ss_pred eEEEEecCCCCCCC----C---CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHHh---CCCcee
Confidence 57999999999999 3 399999999999999999999887 7888887652 2455554432 111122
Q ss_pred EEc----CCCCCHHHHHHHHHHhcCC-----CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 018019 82 ATV----PEDVGTAGALRAIAHHLTA-----KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS 139 (362)
Q Consensus 82 ~~~----~~~~gt~~al~~~~~~i~~-----~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~ 139 (362)
... .+..|+.++++.+++.+.. +.++++.|| ++...++..+++.+...+++.++.+..
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 68 LRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred eCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 221 2335788999988876642 579999999 488889999999998777775555443
No 73
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.50 E-value=6.6e-13 Score=117.98 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=88.3
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
.+||||||.|+|| ....||+|+|++|+|||+|+++++..++ +++|+|++++... .....+.... ....+.++
T Consensus 2 ~~vILAaG~s~R~----~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~--~~~~~~~~~~-~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAGSGSRM----GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDI--DLAKELAKYG-LSKVVKIV 74 (218)
T ss_pred EEEEECCcccccC----CCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHH--HHHHHHHhcc-cCCCeEEE
Confidence 5899999999999 4347999999999999999999999876 8999999885421 2222221111 11233333
Q ss_pred EcCCCCCHHHHHHHHHHhcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019 83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 83 ~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~ 135 (362)
....+..++++.+++.+. .+.++++.|| ++....+..+++.+.+.++.+++
T Consensus 75 --~~~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~ 130 (218)
T cd02516 75 --EGGATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPA 130 (218)
T ss_pred --CCchHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEE
Confidence 223456788999988873 4568888999 67778899999988766543333
No 74
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.49 E-value=4e-13 Score=120.53 Aligned_cols=128 Identities=18% Similarity=0.288 Sum_probs=92.5
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|.+.+||||||.|+|| ..+.||+|++++|+|||.|+++++..++ +++|+|+++.... ..+.+++..+......+
T Consensus 1 ~~~~~iIlAaG~g~R~----g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~-~~~~~~~~~~~~~~~~~ 75 (230)
T PRK13385 1 MNYELIFLAAGQGKRM----NAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQER-KHVQDLMKQLNVADQRV 75 (230)
T ss_pred CceEEEEECCeecccc----CCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhH-HHHHHHHHhcCcCCCce
Confidence 7788999999999999 6678999999999999999999998764 8999999875321 23444444321111123
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCC-cEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019 80 EVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~~-~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~ 135 (362)
.++ ....+..++++.+++.+... .++++.|| ++....+..+++.+.+.++.+.+
T Consensus 76 ~~v--~~g~~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~ 132 (230)
T PRK13385 76 EVV--KGGTERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICA 132 (230)
T ss_pred EEc--CCCchHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEE
Confidence 333 33345568999998877543 46777899 67778899999988776654444
No 75
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.48 E-value=5.9e-13 Score=119.18 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=89.8
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|.+.+||||||.|+|| +...||+|++++|+|||+|+++++..++ +++|+|+++.... +.+...... ....+
T Consensus 2 ~~~~~iILAaG~s~R~----g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~-~~~~~~~~~---~~~~~ 73 (227)
T PRK00155 2 MMVYAIIPAAGKGSRM----GADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDR-PDFAELLLA---KDPKV 73 (227)
T ss_pred CceEEEEEcCcccccc----CCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHH-HHHHHHhhc---cCCce
Confidence 6788999999999999 6668999999999999999999999865 8999999985421 122221111 10123
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcC-CCcEEEEeCC--cccCCChHHHHHHHHhcCC
Q 018019 80 EVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDA 131 (362)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a 131 (362)
.++ ....+.+++++.+++.+. .+.++++.|| ++....+..+++.+...++
T Consensus 74 ~~~--~~~~~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~ 126 (227)
T PRK00155 74 TVV--AGGAERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETGA 126 (227)
T ss_pred EEe--CCcchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCCC
Confidence 333 233467899999988873 4568888899 6778889999998876643
No 76
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.47 E-value=4e-13 Score=115.91 Aligned_cols=113 Identities=27% Similarity=0.341 Sum_probs=86.8
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
+.+||||||.|+|| . .||+++|++|+|||+|+++.+... +++|+|+++.... . .. ..++.++
T Consensus 1 ~~~iILAgG~s~Rm----g--~~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~--~----~~-----~~~~~~v 62 (181)
T cd02503 1 ITGVILAGGKSRRM----G--GDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQE--R----YA-----LLGVPVI 62 (181)
T ss_pred CcEEEECCCccccC----C--CCceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChH--H----Hh-----hcCCcEe
Confidence 46899999999999 3 389999999999999999999887 8999999985421 1 11 1245555
Q ss_pred EcC-CCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEE
Q 018019 83 TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVT 134 (362)
Q Consensus 83 ~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t 134 (362)
..+ ...|+.++++.++..+..+.++++.||+ +....+..+++.+ ..+.+++
T Consensus 63 ~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~ 116 (181)
T cd02503 63 PDEPPGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA-EEGADAV 116 (181)
T ss_pred eCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEE
Confidence 433 3578999999998888667899999995 6666788888776 3344443
No 77
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.45 E-value=1.3e-12 Score=113.69 Aligned_cols=120 Identities=19% Similarity=0.267 Sum_probs=86.9
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (362)
Q Consensus 4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~ 83 (362)
.+||||||.|+|| +.+|.|++++|+|||+|+++.+...++++++|+++... +.+ .++........++.++.
T Consensus 2 ~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~--~~~-~~~~~~~~~~~~~~~~~ 72 (190)
T TIGR03202 2 VAIYLAAGQSRRM------GENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKY--AHL-SWLDPYLLADERIMLVC 72 (190)
T ss_pred eEEEEcCCccccC------CCCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCcc--chh-hhhhHhhhcCCCeEEEE
Confidence 5899999999999 34799999999999999999888889999999998542 111 11221111123455554
Q ss_pred cCC-CCCHHHHHHHHHHhcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 018019 84 VPE-DVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV 132 (362)
Q Consensus 84 ~~~-~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~ 132 (362)
..+ ..|.+.+++.+++.+. .+.++++.|| ++....+..+++........
T Consensus 73 ~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 73 CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 333 4688899999988763 4679999999 57677788888876554443
No 78
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.45 E-value=9.2e-13 Score=119.17 Aligned_cols=121 Identities=22% Similarity=0.317 Sum_probs=88.3
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i 81 (362)
+.+||||||.|+|| +...||++++++|+|||+|+++.+... ++++|+|+++.... +.+.+.+.. .+..+
T Consensus 25 i~aIILAAG~gsRm----g~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~-~~~~~~~~~-----~~~~i 94 (252)
T PLN02728 25 VSVILLAGGVGKRM----GANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYR-DVFEEAVEN-----IDVPL 94 (252)
T ss_pred eEEEEEcccccccC----CCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHH-HHHHHHHHh-----cCCce
Confidence 56899999999999 667899999999999999999999884 89999999985421 233333332 12223
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC----cccCCChHHHHHHHHhcCCeE
Q 018019 82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGD----LVSDVPPGAVTAAHRRHDAVV 133 (362)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D----~i~~~~l~~~l~~h~~~~a~~ 133 (362)
.......+..++++.++..+..+..+|+.+| ++....+..+++...+.++.+
T Consensus 95 ~~v~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i 150 (252)
T PLN02728 95 KFALPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAV 150 (252)
T ss_pred EEcCCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEE
Confidence 2233445667889999888754455667777 566667888888887776543
No 79
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.45 E-value=1.1e-12 Score=114.45 Aligned_cols=114 Identities=23% Similarity=0.304 Sum_probs=85.8
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|.+.+||||||.|+|| . +.||+++|++|+|||+|+++.+. .++++|+|+++... +. +.. .++.
T Consensus 2 ~~~~~vILA~G~s~Rm----~-~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~--~~----~~~-----~~~~ 64 (193)
T PRK00317 2 PPITGVILAGGRSRRM----G-GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNL--AR----YAA-----FGLP 64 (193)
T ss_pred CCceEEEEcCCCcccC----C-CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCCh--HH----HHh-----cCCc
Confidence 5789999999999999 3 47899999999999999999998 77999999987431 11 111 1334
Q ss_pred EEEcCC--CCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCC
Q 018019 81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDA 131 (362)
Q Consensus 81 i~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a 131 (362)
++.... ..|+.++++.+++....+.++++.||. +....+..+++.+.+.+.
T Consensus 65 ~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 119 (193)
T PRK00317 65 VIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDA 119 (193)
T ss_pred EEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCC
Confidence 443322 368889999888876667799999994 666678888887654433
No 80
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.42 E-value=2.3e-12 Score=111.68 Aligned_cols=118 Identities=21% Similarity=0.291 Sum_probs=86.9
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
+.+||||||.|+|| . .+||+|++++|+|||+|+++.+.. ++++|+|++.... . .+... ..++.++
T Consensus 1 ~~~iILAgG~s~Rm----g-~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~---~--~~~~~----~~~~~~i 65 (186)
T TIGR02665 1 ISGVILAGGRARRM----G-GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNP---E--RYAQA----GFGLPVV 65 (186)
T ss_pred CeEEEEcCCccccC----C-CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCH---H--HHhhc----cCCCcEE
Confidence 35899999999999 3 359999999999999999999975 5899998887431 1 11111 1234444
Q ss_pred Ec--CCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEE
Q 018019 83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 83 ~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~ 135 (362)
.. +...|++++++.+++.+..+.++++.||. +....+..+++.+.+.++.+++
T Consensus 66 ~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 122 (186)
T TIGR02665 66 PDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADIAV 122 (186)
T ss_pred ecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence 43 23489999999999888667899999994 6666678888876554444433
No 81
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.42 E-value=2.6e-12 Score=112.74 Aligned_cols=112 Identities=18% Similarity=0.181 Sum_probs=85.4
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|++.+||||||.|+|| +.+|++++++|+|||+|+++.+... +++|+|+++.. +...... ..++.
T Consensus 6 ~~~~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~---~~~~~~~------~~~~~ 69 (200)
T PRK02726 6 NNLVALILAGGKSSRM------GQDKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP---ERYQSLL------PPGCH 69 (200)
T ss_pred CCceEEEEcCCCcccC------CCCceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH---HHHHhhc------cCCCe
Confidence 5678999999999999 3479999999999999999999754 78899988732 1222211 12355
Q ss_pred EEEcC-CCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHh
Q 018019 81 VATVP-EDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRR 128 (362)
Q Consensus 81 i~~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~ 128 (362)
++... ...|...+++.++..+..+.++|+.|| ++....+..+++.+..
T Consensus 70 ~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 70 WLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred EecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 55433 347999999999998876789999999 4667778888887643
No 82
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.39 E-value=5.3e-12 Score=120.51 Aligned_cols=125 Identities=22% Similarity=0.320 Sum_probs=91.6
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcc-
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH- 78 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~- 78 (362)
|++.+||||||.|+|| +...||+++|++|+|||+|+++.+..++ +++|+|++++... +....+.. ...
T Consensus 4 m~v~aIILAAG~GsRm----g~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~-~~~~~~~~-----~~~~ 73 (378)
T PRK09382 4 SDISLVIVAAGRSTRF----SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDI-AYMKKALP-----EIKF 73 (378)
T ss_pred CcceEEEECCCCCccC----CCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHH-HHHHHhcc-----cCCe
Confidence 5678999999999999 6678999999999999999999999987 7999999885421 11221111 111
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 018019 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS 139 (362)
Q Consensus 79 i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~ 139 (362)
+.+ .....+..++++.+++.+..+.++|..|| ++....+..+++...+.+ .++...+
T Consensus 74 v~~--v~gG~~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~~~--a~i~~~p 132 (378)
T PRK09382 74 VTL--VTGGATRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDKAD--CVLPALP 132 (378)
T ss_pred EEE--eCCCchHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhcCC--eEEEEEE
Confidence 222 23445678999999988866678888999 677777888888776543 3444433
No 83
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.32 E-value=1.5e-11 Score=108.81 Aligned_cols=120 Identities=26% Similarity=0.382 Sum_probs=84.8
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i 81 (362)
+.+||+|||.|+|| ..+.||++++++|+|+|.|+|+.+.+. .+++|+|++...+ .+.+++.+.. ..+.+
T Consensus 1 V~aIilAaG~G~R~----g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~-~~~~~~~~~~-----~~v~i 70 (221)
T PF01128_consen 1 VAAIILAAGSGSRM----GSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPED-IDYVEELLSK-----KKVKI 70 (221)
T ss_dssp EEEEEEESS-STCC----TSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGG-HHHHHHHHHH-----TTEEE
T ss_pred CEEEEeCCccchhc----CcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchh-HHHHHHhhcC-----CCEEE
Confidence 35899999999999 778999999999999999999999885 5899999998554 2455555543 23444
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCC--cEEEEeCC--cccCCChHHHHHHHHh-cCCeEE
Q 018019 82 ATVPEDVGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRR-HDAVVT 134 (362)
Q Consensus 82 ~~~~~~~gt~~al~~~~~~i~~~--~~lv~~~D--~i~~~~l~~~l~~h~~-~~a~~t 134 (362)
+ .......++++.++..+... .++|-.|= ++....+.++++..++ .++.+.
T Consensus 71 v--~GG~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~ 126 (221)
T PF01128_consen 71 V--EGGATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIP 126 (221)
T ss_dssp E--E--SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEE
T ss_pred e--cCChhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEE
Confidence 4 45567789999998887643 33443333 6666678888988876 555443
No 84
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.32 E-value=7.2e-11 Score=105.17 Aligned_cols=119 Identities=15% Similarity=0.214 Sum_probs=89.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~ 83 (362)
|||+|+|.|+|| . .|.++|++|+|||.|+++.+.+++ +++|+|.+.. +.+.+....+ +..+..
T Consensus 2 aiIpArG~Skr~----~---~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~----~~i~~~a~~~-----g~~v~~ 65 (222)
T TIGR03584 2 AIIPARGGSKRI----P---RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD----EEIAEVAKSY-----GASVPF 65 (222)
T ss_pred EEEccCCCCCCC----C---CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC----HHHHHHHHHc-----CCEeEE
Confidence 799999999999 3 399999999999999999999987 6778776653 3455555432 333321
Q ss_pred --c----CCCCCHHHHHHHHHHhcC----CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 018019 84 --V----PEDVGTAGALRAIAHHLT----AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS 139 (362)
Q Consensus 84 --~----~~~~gt~~al~~~~~~i~----~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~ 139 (362)
. .+..|+.++++.+++.+. .+.++++.|| ++...++..+++.+.+.+++..+.+.+
T Consensus 66 ~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~ 133 (222)
T TIGR03584 66 LRPKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTS 133 (222)
T ss_pred eChHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeec
Confidence 1 335788899999987663 3558999999 677889999999998766776555544
No 85
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.31 E-value=3.3e-11 Score=102.74 Aligned_cols=117 Identities=27% Similarity=0.363 Sum_probs=94.5
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i 81 (362)
.+-+||||+|+|+|| +.+|.|+|+.|+||++++++....+++++++|++++.. .+...... ...++.+
T Consensus 5 ~v~~VvLAAGrssRm------G~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~-~~~~~a~~-----~~~~~~~ 72 (199)
T COG2068 5 TVAAVVLAAGRSSRM------GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRV-AEAVEALL-----AQLGVTV 72 (199)
T ss_pred ceEEEEEcccccccC------CCcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcch-hhHHHhhh-----ccCCeEE
Confidence 357899999999999 47899999999999999999999999999999999752 11222211 2356777
Q ss_pred EEcCC-CCCHHHHHHHHHHhcCCC--cEEEEeCC--cccCCChHHHHHHHHhcC
Q 018019 82 ATVPE-DVGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRRHD 130 (362)
Q Consensus 82 ~~~~~-~~gt~~al~~~~~~i~~~--~~lv~~~D--~i~~~~l~~~l~~h~~~~ 130 (362)
+..++ ..|.+.+++.+......+ .++++.|| .++..++..+++.+..++
T Consensus 73 v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~ 126 (199)
T COG2068 73 VVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRARG 126 (199)
T ss_pred EeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhccccC
Confidence 76655 589999999998888644 68999999 488889999999988773
No 86
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.30 E-value=3.6e-11 Score=105.93 Aligned_cols=126 Identities=25% Similarity=0.291 Sum_probs=88.1
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|.+.+||+|||.|+|| +.+.||.+++++|+|||+|+|+.+.... +++|+|+++... ...+.++.. ......+
T Consensus 3 ~~~~~vilAaG~G~R~----~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~-~~~~~~~~~--~~~~~~v 75 (230)
T COG1211 3 MMVSAVILAAGFGSRM----GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPED-DPYFEKLPK--LSADKRV 75 (230)
T ss_pred ceEEEEEEcCcccccc----CCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhh-hHHHHHhhh--hccCCeE
Confidence 4578999999999999 7799999999999999999999998875 799999998532 234444432 1111223
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCC--Cc-EEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019 80 EVATVPEDVGTAGALRAIAHHLTA--KD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~--~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~ 135 (362)
.+ ..+.....++++.+++.+.. ++ +||-.+- +++...+.++++.....++.+++
T Consensus 76 ~~--v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~a 134 (230)
T COG1211 76 EV--VKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILA 134 (230)
T ss_pred EE--ecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEE
Confidence 33 35567788999999988862 33 3333333 56666788888555445554443
No 87
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.25 E-value=7.7e-11 Score=112.76 Aligned_cols=119 Identities=19% Similarity=0.270 Sum_probs=87.8
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
+.+||||||.|+|| . +.||+|+|++|+|||+|+++.+.. .+++|+|++.... +.+.+++. ++.++
T Consensus 6 i~~VILAgG~s~Rm----g-g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~--~~~~~~~~-------~~~~i 70 (366)
T PRK14489 6 IAGVILAGGLSRRM----N-GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDP--ARYQDLFP-------GLPVY 70 (366)
T ss_pred ceEEEEcCCcccCC----C-CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCH--HHHHhhcc-------CCcEE
Confidence 57999999999999 3 478999999999999999999975 4899998776432 23322211 12233
Q ss_pred Ec--CCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEE
Q 018019 83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAM 136 (362)
Q Consensus 83 ~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l 136 (362)
.. ....|..++++.+++.+..+.++|+.|| ++....+..+++.+...++++.+.
T Consensus 71 ~d~~~g~~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 71 PDILPGFQGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred ecCCCCCCChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 22 2236888999999888866779999999 466667888888776666665543
No 88
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.23 E-value=6.5e-11 Score=102.54 Aligned_cols=111 Identities=22% Similarity=0.334 Sum_probs=81.5
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE 80 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~ 80 (362)
|.|.+||||||+|+|| . +|+|++++|+|||+|+++.|....- .++|+.... . . .+. ..+++
T Consensus 3 ~~~~~vILAGG~srRm-~------dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~-~--~--~~~------~~g~~ 63 (192)
T COG0746 3 TPMTGVILAGGKSRRM-R------DKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRN-Q--G--RYA------EFGLP 63 (192)
T ss_pred CCceEEEecCCccccc-c------ccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCc-h--h--hhh------ccCCc
Confidence 4688999999999999 2 4999999999999999999987644 455554422 1 1 111 23466
Q ss_pred EEEcCCCC-CHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 018019 81 VATVPEDV-GTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHD 130 (362)
Q Consensus 81 i~~~~~~~-gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~ 130 (362)
++....+. |...+++.+++....+.+++++||+ +...-+..+.....+.+
T Consensus 64 vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 64 VVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred eeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 66544443 9999999999998878899999995 55555676766665544
No 89
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.17 E-value=3.2e-10 Score=101.93 Aligned_cols=118 Identities=23% Similarity=0.297 Sum_probs=83.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT 83 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~ 83 (362)
|||||||.|+|| . +|+|++++|+|||+|+++.+..++ +++++|+++.....+.+.+++.. .++.++.
T Consensus 2 aiIlA~G~S~R~----~---~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-----~~v~~v~ 69 (233)
T cd02518 2 AIIQARMGSTRL----P---GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-----LGVKVFR 69 (233)
T ss_pred EEEeeCCCCCCC----C---CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-----cCCeEEE
Confidence 799999999999 3 399999999999999999999987 89999998854211344444432 2455554
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019 84 VPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~ 135 (362)
.+. .+.......+......+.++++.|| ++....+..+++.++..+.++++
T Consensus 70 ~~~-~~~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~ 122 (233)
T cd02518 70 GSE-EDVLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTS 122 (233)
T ss_pred CCc-hhHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 332 2222223333333334679999999 57778899999988876666554
No 90
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.17 E-value=3e-10 Score=99.28 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=73.6
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCC-cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g-~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|++.+||||||.|+|| +.+|+++|++| +|||+|+++++... +++|+|+++.. .. . ..+
T Consensus 7 ~~i~~vILAgG~s~Rm------G~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~----~~----~------~~~ 65 (196)
T PRK00560 7 DNIPCVILAGGKSSRM------GENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK----KF----E------FNA 65 (196)
T ss_pred cCceEEEECCcccccC------CCCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch----hc----c------cCC
Confidence 4578999999999999 46899999999 99999999999876 88899888731 11 0 122
Q ss_pred EEEEc--CCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHH
Q 018019 80 EVATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAV 122 (362)
Q Consensus 80 ~i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~ 122 (362)
.++.. ....|+..++..++.....+.++|+.||+ +....+..+
T Consensus 66 ~~v~d~~~~~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 66 PFLLEKESDLFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred cEEecCCCCCCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHH
Confidence 33332 22357777777776655567899999995 444445555
No 91
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.13 E-value=4.3e-10 Score=107.87 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=79.0
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV 81 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i 81 (362)
.+.+||||||+|+|| +.+|+|+|++|+|||+|+++.+.. .+++|+|+++.. .... +.. .++.+
T Consensus 174 ~i~~iILAGG~SsRm------G~~K~ll~~~Gk~ll~~~l~~l~~-~~~~vvV~~~~~----~~~~-~~~-----~~v~~ 236 (369)
T PRK14490 174 PLSGLVLAGGRSSRM------GSDKALLSYHESNQLVHTAALLRP-HCQEVFISCRAE----QAEQ-YRS-----FGIPL 236 (369)
T ss_pred CceEEEEcCCccccC------CCCcEEEEECCccHHHHHHHHHHh-hCCEEEEEeCCc----hhhH-Hhh-----cCCcE
Confidence 457999999999999 358999999999999999999976 478888877643 1111 111 24555
Q ss_pred EEcCC-CCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHH
Q 018019 82 ATVPE-DVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAA 125 (362)
Q Consensus 82 ~~~~~-~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~ 125 (362)
+.... ..|...++..+++....+.++++.||+ +....+..+++.
T Consensus 237 i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 237 ITDSYLDIGPLGGLLSAQRHHPDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred EeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 54333 468788888887766667899999994 666667777664
No 92
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.04 E-value=1.8e-09 Score=101.93 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=79.1
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
+.+||||||+|+|| +.+|+|+|+.|+||++|+++.+... +++|+|+++.. .... .. ...+.++
T Consensus 161 i~~IILAGGkSsRM------G~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~----~~~~-~~-----~~~v~~I 223 (346)
T PRK14500 161 LYGLVLTGGKSRRM------GKDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPS----QWQG-TP-----LENLPTL 223 (346)
T ss_pred ceEEEEeccccccC------CCCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCch----Hhhh-cc-----ccCCeEE
Confidence 56899999999999 4689999999999999999998754 88898887632 1111 00 0123444
Q ss_pred Ec-CCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHH
Q 018019 83 TV-PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAH 126 (362)
Q Consensus 83 ~~-~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h 126 (362)
.. ....|...+|+.+++....++++++.||+ +....+..+++.+
T Consensus 224 ~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 224 PDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred eCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 32 23479999999998877656889999995 5555677777765
No 93
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.94 E-value=1.1e-09 Score=99.96 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=78.9
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHh--------CCCCeEEEEccCcchHHHHHHHHHhh
Q 018019 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLEL--------SNIKDLIVVVEGADAALRVGGWISAA 72 (362)
Q Consensus 4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~--------~gi~~v~vv~~~~~~~~~i~~~~~~~ 72 (362)
.+||||||.|||| +...||+|+||+ |+|+|++.++++.. .+|..+++...+ ..+.+.+++++.
T Consensus 2 a~viLaGG~GtRL----g~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~--t~~~t~~~l~~~ 75 (266)
T cd04180 2 AVVLLAGGLGTRL----GKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKY--THEKTQCYFEKI 75 (266)
T ss_pred EEEEECCCCcccc----CCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCch--hHHHHHHHHHHc
Confidence 5799999999999 789999999999 99999999999976 235444444332 245788888764
Q ss_pred hcCCcceEEEEcC---------------------CCCCHHHHHHHH-----HHhcC---CCcEEEEeCCc-ccCC-ChHH
Q 018019 73 YVDRLHVEVATVP---------------------EDVGTAGALRAI-----AHHLT---AKDVLVVSGDL-VSDV-PPGA 121 (362)
Q Consensus 73 ~~~~~~i~i~~~~---------------------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~-i~~~-~l~~ 121 (362)
......+.+..|+ .+.|.|+.+... ++.+. .+++.|.+.|. +... |..
T Consensus 76 ~~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~- 154 (266)
T cd04180 76 NQKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL- 154 (266)
T ss_pred CCCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH-
Confidence 3111122222111 134555543322 22221 34567777774 3333 444
Q ss_pred HHHHHHhcCCeEEEEEee
Q 018019 122 VTAAHRRHDAVVTAMICS 139 (362)
Q Consensus 122 ~l~~h~~~~a~~t~l~~~ 139 (362)
++-.+...++++.+-+.+
T Consensus 155 ~lG~~~~~~~~~~~kvv~ 172 (266)
T cd04180 155 FIGIAIQNRKAINQKVVP 172 (266)
T ss_pred HHHHHHHcCCCEEEEEEE
Confidence 556666667776665444
No 94
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.87 E-value=2.7e-08 Score=85.19 Aligned_cols=125 Identities=12% Similarity=0.116 Sum_probs=86.2
Q ss_pred CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|+..|||+|.|.++|. |. |.+.+++|+|||.|+++.+.+++ |++|+|.+.+ +.+.+....+. ..+
T Consensus 2 ~~~iAiIpAR~gSKgI-~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs----~~Il~~A~~yg---ak~ 67 (228)
T COG1083 2 MKNIAIIPARGGSKGI-KN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDS----EEILEEAKKYG---AKV 67 (228)
T ss_pred cceEEEEeccCCCCcC-Cc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCCc----HHHHHHHHHhC---ccc
Confidence 5678999999999999 33 99999999999999999999998 7888888763 35555444331 122
Q ss_pred EEEEcC----CCCCHHHHHHHHHHhcC-CCc-EEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 018019 80 EVATVP----EDVGTAGALRAIAHHLT-AKD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS 139 (362)
Q Consensus 80 ~i~~~~----~~~gt~~al~~~~~~i~-~~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~ 139 (362)
.+.... +...|.+++.++.+.+. .++ ++.+.+- +.+..+++..++.+.+.+.+-.+.+++
T Consensus 68 ~~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e 135 (228)
T COG1083 68 FLKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVE 135 (228)
T ss_pred cccCChhhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEee
Confidence 223221 22344456666666544 233 5666554 788899999999998876654444433
No 95
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.82 E-value=3.8e-08 Score=87.31 Aligned_cols=113 Identities=20% Similarity=0.322 Sum_probs=78.7
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA 82 (362)
Q Consensus 4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~ 82 (362)
.|||+|.|.++|+ .. |.|.+++|+|||+|+++++.+++ +++|+|.|.. +.+.+.+.++ ++.+.
T Consensus 1 iaiIpAR~gS~rl----p~---Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~----~~i~~~~~~~-----g~~v~ 64 (217)
T PF02348_consen 1 IAIIPARGGSKRL----PG---KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD----EEIDDIAEEY-----GAKVI 64 (217)
T ss_dssp EEEEEE-SSSSSS----TT---GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS----HHHHHHHHHT-----TSEEE
T ss_pred CEEEecCCCCCCC----Cc---chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC----HHHHHHHHHc-----CCeeE
Confidence 3899999999999 33 99999999999999999999986 7999999884 3566666553 23344
Q ss_pred EcCCC-CCHHHHHHHHHHhcCCC---cEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 018019 83 TVPED-VGTAGALRAIAHHLTAK---DVLVVSGD--LVSDVPPGAVTAAHRRHDAV 132 (362)
Q Consensus 83 ~~~~~-~gt~~al~~~~~~i~~~---~~lv~~~D--~i~~~~l~~~l~~h~~~~a~ 132 (362)
.-+.. ...-+....+......+ .++.+.|| ++.+..+..+++.+.+...+
T Consensus 65 ~~~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 65 FRRGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp E--TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred EcChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 33332 22234444444433333 67888889 56677899999999888765
No 96
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.72 E-value=2.2e-06 Score=80.43 Aligned_cols=131 Identities=20% Similarity=0.266 Sum_probs=86.5
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHhCC------------CCeEEEEccCcchHHHHH
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELSN------------IKDLIVVVEGADAALRVG 66 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~~g------------i~~v~vv~~~~~~~~~i~ 66 (362)
++.+||||||.|||| +...||+|+||+ |+|++++.++.+...+ + .++|.++... .+.+.
T Consensus 15 ~va~viLaGG~GTRL----g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t-~~~t~ 88 (323)
T cd04193 15 KVAVLLLAGGQGTRL----GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEAT-HEETR 88 (323)
T ss_pred CEEEEEECCCccccc----CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhH-hHHHH
Confidence 467899999999999 889999999998 6999999999998742 3 3556666332 35788
Q ss_pred HHHHh--hhc-CCcceEEEEcC---------------------CCCCHHHHHHHH-----HHhcC---CCcEEEEeCCcc
Q 018019 67 GWISA--AYV-DRLHVEVATVP---------------------EDVGTAGALRAI-----AHHLT---AKDVLVVSGDLV 114 (362)
Q Consensus 67 ~~~~~--~~~-~~~~i~i~~~~---------------------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i 114 (362)
+++++ ++. .+..+.+..|+ .+.|.|+-.... ++.+. .+++.+.+.|.+
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 88875 221 11123222220 135666543322 23232 367888888963
Q ss_pred -c-CCChHHHHHHHHhcCCeEEEEEee
Q 018019 115 -S-DVPPGAVTAAHRRHDAVVTAMICS 139 (362)
Q Consensus 115 -~-~~~l~~~l~~h~~~~a~~t~l~~~ 139 (362)
. ..|. .++-.+..+++++.+-+.+
T Consensus 169 L~~~~Dp-~~lG~~~~~~~~~~~kvv~ 194 (323)
T cd04193 169 LVKVADP-VFIGFCISKGADVGAKVVR 194 (323)
T ss_pred cccccCH-HHhHHHHHcCCceEEEEEE
Confidence 3 3444 3677888889998876554
No 97
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.66 E-value=2.1e-07 Score=80.09 Aligned_cols=121 Identities=20% Similarity=0.260 Sum_probs=85.2
Q ss_pred CCceEEEE-eCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcc
Q 018019 1 MDFQVVVL-AGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH 78 (362)
Q Consensus 1 M~~~avIl-A~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~ 78 (362)
|.+.++|+ |.-.+||| .. |.|+|++|+|||+++|+++..+. +++++|.++.....+.+.+++.+ .|
T Consensus 1 ~~~I~~IiQARmgStRL----pg---KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~-----~G 68 (241)
T COG1861 1 MSMILVIIQARMGSTRL----PG---KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS-----HG 68 (241)
T ss_pred CCcEEEEeeecccCccC----Cc---chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH-----cC
Confidence 55555555 55456788 33 99999999999999999998886 78899999866555677777764 24
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEE
Q 018019 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT 134 (362)
Q Consensus 79 i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t 134 (362)
+.+.. .....-.+....+.+....+.++=+.|| ++.+.-+..+++.|.++|++-+
T Consensus 69 ~~vfr-Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 69 FYVFR-GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred eeEec-CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 54431 1112222334455666656678889999 5666667889999999988743
No 98
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.52 E-value=1.4e-05 Score=78.43 Aligned_cols=131 Identities=18% Similarity=0.280 Sum_probs=81.3
Q ss_pred CceEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHhC------------C-CCeEEEEccCcchHHHH
Q 018019 2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS------------N-IKDLIVVVEGADAALRV 65 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~~------------g-i~~v~vv~~~~~~~~~i 65 (362)
++.+||||||.|||| +...||+|+||+ |+|++++.++++... + .-.++|+++... .+.+
T Consensus 106 kvavViLAGG~GTRL----g~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t-~~~t 180 (482)
T PTZ00339 106 EVAVLILAGGLGTRL----GSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFN-HDQT 180 (482)
T ss_pred CeEEEEECCCCcCcC----CCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcch-HHHH
Confidence 467999999999999 778999999994 899999999999764 1 124566665433 3578
Q ss_pred HHHHHhh--hc-CCcceEEEEc--------C--------------CCCCHHHHHHHH-----HHhcC---CCcEEEEeCC
Q 018019 66 GGWISAA--YV-DRLHVEVATV--------P--------------EDVGTAGALRAI-----AHHLT---AKDVLVVSGD 112 (362)
Q Consensus 66 ~~~~~~~--~~-~~~~i~i~~~--------~--------------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D 112 (362)
.+++.+. +. +...+.+..| . .+.|.|+-.... ++.+. -+++.|.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 8888742 21 1111221111 0 134665543322 22222 3578888888
Q ss_pred cc-c-CCChHHHHHHHHhcCC-eEEEEEe
Q 018019 113 LV-S-DVPPGAVTAAHRRHDA-VVTAMIC 138 (362)
Q Consensus 113 ~i-~-~~~l~~~l~~h~~~~a-~~t~l~~ 138 (362)
.+ . ..|. .++-.+...++ ++...+.
T Consensus 261 N~L~k~~DP-~flG~~~~~~~~~~~~kvv 288 (482)
T PTZ00339 261 NILAKVLDP-EFIGLASSFPAHDVLNKCV 288 (482)
T ss_pred cccccccCH-HHhHHHHHCCchhheeeee
Confidence 54 3 3343 36677777777 6554433
No 99
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.10 E-value=0.00084 Score=62.14 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=108.7
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHh----CCCC-eEEEEccCcchHHHHHHHHHhhhcCC
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR 76 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~----~gi~-~v~vv~~~~~~~~~i~~~~~~~~~~~ 76 (362)
+.+|+||||.|||| +.+.||.++||. |+.+++..++++.. .|.. -.+|.++... .+...++++++....
T Consensus 4 vavl~LaGG~GTRL----G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~~~~~~~ 78 (300)
T cd00897 4 LVVLKLNGGLGTSM----GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNT-DEDTKKILKKYAGVN 78 (300)
T ss_pred EEEEEecCCccccc----CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcc-hHHHHHHHHHcCCCc
Confidence 46789999999999 889999999995 56999999998854 3432 3555555443 356778887642111
Q ss_pred cceEEEEc-------------------C-----CCCCHHH---HHHHH--HHhcC---CCcEEEEeCCcccC-CChHHHH
Q 018019 77 LHVEVATV-------------------P-----EDVGTAG---ALRAI--AHHLT---AKDVLVVSGDLVSD-VPPGAVT 123 (362)
Q Consensus 77 ~~i~i~~~-------------------~-----~~~gt~~---al~~~--~~~i~---~~~~lv~~~D~i~~-~~l~~~l 123 (362)
..+.+..| . .+.|.|+ +|+.. ++.+. .+++.+.+.|.+.. .|.. ++
T Consensus 79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~-~l 157 (300)
T cd00897 79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLR-IL 157 (300)
T ss_pred cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHH-HH
Confidence 12221111 0 1234443 33321 22222 36789999996543 4544 77
Q ss_pred HHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcE-EEEeecCcccccccccchHHHhhcCcee
Q 018019 124 AAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF-LLHIATGAELEKDTRIRKSILRAVGQMD 202 (362)
Q Consensus 124 ~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-l~~~~~~~~~ek~~~i~~~~l~~~~~~~ 202 (362)
..|..+++++++=+.+.. .+ .+.-|++... +|+. ++.+. .++.+....... .
T Consensus 158 g~~~~~~~~~~~evv~Kt--~~--------------dek~G~l~~~-~g~~~vvEys---------e~p~e~~~~~~~-~ 210 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKT--RA--------------DVKGGTLIQY-EGKLRLLEIA---------QVPKEHVDEFKS-I 210 (300)
T ss_pred HHHHhcCCceEEEEeecC--CC--------------CCcccEEEEE-CCEEEEEEec---------cCCHHHHHhhcC-c
Confidence 888889999887444322 11 1223444432 3432 22222 223222211110 1
Q ss_pred eecCceeceEEeeCHHHHHHHHh
Q 018019 203 IRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 203 ~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
....+.+++.+.|+-+.|..+++
T Consensus 211 ~~~~~~nt~n~~~~l~~L~~~~~ 233 (300)
T cd00897 211 KKFKIFNTNNLWVNLKAVKRVVE 233 (300)
T ss_pred ccceEEEEeEEEEEHHHHHHHHH
Confidence 12356788888999988887764
No 100
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.94 E-value=7.6e-05 Score=64.07 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCCeeeeeeCC--cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc-CCCCCHHHHHHHHHH
Q 018019 23 EVPKALLPVAN--RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV-PEDVGTAGALRAIAH 99 (362)
Q Consensus 23 ~~pK~llpv~g--~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~-~~~~gt~~al~~~~~ 99 (362)
+.+|+|++++| +|||+|+++.+. ..+++|+|+++... .. . ..++.++.. ....|...++..++.
T Consensus 2 G~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~---~~----~-----~~~~~~i~d~~~g~gpl~~~~~gl~ 68 (178)
T PRK00576 2 GRDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ---PL----P-----ELPAPVLRDELRGLGPLPATGRGLR 68 (178)
T ss_pred CCCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc---cc----c-----cCCCCEeccCCCCCCcHHHHHHHHH
Confidence 46899999999 999999999876 46899999987431 11 1 123334432 223566665554443
Q ss_pred hc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 018019 100 HL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHD 130 (362)
Q Consensus 100 ~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~ 130 (362)
.. ..++++|+.||+ +....+..+++.+...+
T Consensus 69 ~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~ 104 (178)
T PRK00576 69 AAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTD 104 (178)
T ss_pred HHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCC
Confidence 32 357899999995 65566777777654433
No 101
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.93 E-value=0.0019 Score=63.12 Aligned_cols=190 Identities=12% Similarity=0.111 Sum_probs=108.7
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHh----CCCCe-EEEEccCcchHHHHHHHHHhhhcCC
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIKD-LIVVVEGADAALRVGGWISAAYVDR 76 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~----~gi~~-v~vv~~~~~~~~~i~~~~~~~~~~~ 76 (362)
+.+|.||||.|||| +...||.++|+. |+.+++..++++.. .|..= .+|.++... .+...++++++-..+
T Consensus 80 ~avlkLnGGlGTrm----G~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T-~~~T~~~l~k~~~~~ 154 (469)
T PLN02474 80 LVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNT-HDDTQKIVEKYTNSN 154 (469)
T ss_pred EEEEEecCCccccc----CCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCch-hHHHHHHHHHcCCCc
Confidence 45789999999999 889999999995 57999988888754 34432 355555433 356777777532111
Q ss_pred cceEEEEc----------------C--------CCCCHHH---HHHHH--HHhcC---CCcEEEEeCCcccC-CChHHHH
Q 018019 77 LHVEVATV----------------P--------EDVGTAG---ALRAI--AHHLT---AKDVLVVSGDLVSD-VPPGAVT 123 (362)
Q Consensus 77 ~~i~i~~~----------------~--------~~~gt~~---al~~~--~~~i~---~~~~lv~~~D~i~~-~~l~~~l 123 (362)
..+.+..| . .+.|-|+ +|+.. ++.+. .+++.|.+.|.+.. .|.. ++
T Consensus 155 ~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~-~l 233 (469)
T PLN02474 155 IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK-IL 233 (469)
T ss_pred cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH-HH
Confidence 22222211 0 1234443 33322 23222 36889999997543 4554 77
Q ss_pred HHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcE-EEEeecCcccccccccchHHHhhcCcee
Q 018019 124 AAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF-LLHIATGAELEKDTRIRKSILRAVGQMD 202 (362)
Q Consensus 124 ~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-l~~~~~~~~~ek~~~i~~~~l~~~~~~~ 202 (362)
..|..+++++++=+.+... + ...-|.+.. .+|+. ++.+.+ ++.+....... .
T Consensus 234 g~~~~~~~e~~~ev~~Kt~--~--------------d~kgG~l~~-~dgk~~lvEysq---------vp~e~~~~f~~-~ 286 (469)
T PLN02474 234 NHLIQNKNEYCMEVTPKTL--A--------------DVKGGTLIS-YEGKVQLLEIAQ---------VPDEHVNEFKS-I 286 (469)
T ss_pred HHHHhcCCceEEEEeecCC--C--------------CCCccEEEE-ECCEEEEEEEec---------CCHHHHHhhcc-c
Confidence 8888889888775543221 1 111244432 23432 233322 23322221111 1
Q ss_pred eecCceeceEEeeCHHHHHHHHh
Q 018019 203 IRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 203 ~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
....+.+++.+.|+-+.|..+++
T Consensus 287 ~kf~~fNtnn~w~~L~~l~~~~~ 309 (469)
T PLN02474 287 EKFKIFNTNNLWVNLKAIKRLVE 309 (469)
T ss_pred ccceeeeeeeEEEEHHHHHHHhh
Confidence 23467788999999999988764
No 102
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.52 E-value=0.006 Score=59.32 Aligned_cols=192 Identities=17% Similarity=0.228 Sum_probs=106.1
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCC-cchHHHHHHHHHh----CCCC-eEEEEccCcchHHHHHHHHHhhhcCC
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR 76 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g-~plI~~~l~~l~~----~gi~-~v~vv~~~~~~~~~i~~~~~~~~~~~ 76 (362)
+.+|+||||.|||| +...||.++||.. +.+++..++++.. .|.. -.+|.++... .+...+++++++.-.
T Consensus 57 vavl~LaGGlGTrl----G~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~kyfg~~ 131 (420)
T PF01704_consen 57 VAVLKLAGGLGTRL----GCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNT-HEDTRKFLEKYFGLD 131 (420)
T ss_dssp EEEEEEEESBSGCC----TESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTT-HHHHHHHHHHGCGSS
T ss_pred EEEEEEcCcccCcc----CCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCccc-HHHHHHHHHHhcCCC
Confidence 45688999999999 8899999999954 5899988888765 2432 3566666443 357888888744322
Q ss_pred cceEEEEc----------------C-------C---CCCHHHHHHHH-----HHhcC---CCcEEEEeCCcccC-CChHH
Q 018019 77 LHVEVATV----------------P-------E---DVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSD-VPPGA 121 (362)
Q Consensus 77 ~~i~i~~~----------------~-------~---~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~-~~l~~ 121 (362)
..+.+..| + . +.|.|+..... ++.+. .+++.|.+.|.+.. .|. .
T Consensus 132 ~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp-~ 210 (420)
T PF01704_consen 132 VDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP-V 210 (420)
T ss_dssp CCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H-H
T ss_pred cceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH-H
Confidence 22222211 0 0 22555432221 22221 36899999997543 444 3
Q ss_pred HHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCce
Q 018019 122 VTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQM 201 (362)
Q Consensus 122 ~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~ 201 (362)
++..+.++++++.+-+.+... + .+.-|++... +|+. .+.|- ..++..........
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~--~--------------dek~Gvl~~~-~G~~--~vvEy------sqip~~~~~~~~~~ 265 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTS--P--------------DEKGGVLCRY-DGKL--QVVEY------SQIPKEHMAEFKDI 265 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CS--T--------------TTSSEEEEEE-TTEE--EEEEG------GGS-HHGHHHHTST
T ss_pred HHHHHHhccchhheeeeecCC--C--------------CCceeEEEEe-CCcc--EEEEe------ccCCHHHHHhhhcc
Confidence 788888889998876655321 1 1223555433 3432 22221 12333322211110
Q ss_pred eeecCceeceEEeeCHHHHHHHHhc
Q 018019 202 DIRADLMDAHMYAFNRSVLQEVLDQ 226 (362)
Q Consensus 202 ~~~~~l~~~giYi~s~~vl~~~~~~ 226 (362)
. ...+.+++--.|+-..|..+++.
T Consensus 266 ~-~~~~FntnNi~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 266 K-GFLLFNTNNIWFSLDFLKRLLER 289 (420)
T ss_dssp T-TSBEEEEEEEEEEHHHHHHHHHT
T ss_pred c-cceEEEeceeeEEHHHHHHHHHh
Confidence 0 12344677668999999887654
No 103
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.011 Score=57.12 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=78.6
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHhC----CCC-eEEEEccCcchHHHHHHHHHh--hhc
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NIK-DLIVVVEGADAALRVGGWISA--AYV 74 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~~----gi~-~v~vv~~~~~~~~~i~~~~~~--~~~ 74 (362)
+.+|+||||.|||| ....||.+++|. |+++++.+.+.+..+ +++ ..++.++-.. ++-..++.. ++.
T Consensus 106 lAvl~LaGGqGtrl----G~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt--~~t~s~f~~~~Y~~ 179 (472)
T COG4284 106 LAVLKLAGGQGTRL----GCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNT--EETDSYFKSNDYFG 179 (472)
T ss_pred eEEEEecCCccccc----ccCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCc--HHHHHHHhhhhhcC
Confidence 45789999999999 888999999999 889999988887553 443 2455555322 233333332 211
Q ss_pred -CCcceEEEEc------------------CC-----CCCHH---HHHHH--HHHhc-C--CCcEEEEeCCc-ccCCChHH
Q 018019 75 -DRLHVEVATV------------------PE-----DVGTA---GALRA--IAHHL-T--AKDVLVVSGDL-VSDVPPGA 121 (362)
Q Consensus 75 -~~~~i~i~~~------------------~~-----~~gt~---~al~~--~~~~i-~--~~~~lv~~~D~-i~~~~l~~ 121 (362)
++..|.+..| +. +.|.| .+|.. ..+.+ . .+++.|.+.|. ....|+.
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~- 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLK- 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHH-
Confidence 1112222111 11 23444 44443 22222 2 36788888995 4456765
Q ss_pred HHHHHHhcCCeEEEEEee
Q 018019 122 VTAAHRRHDAVVTAMICS 139 (362)
Q Consensus 122 ~l~~h~~~~a~~t~l~~~ 139 (362)
++..+..++.++++=++.
T Consensus 259 ~lg~~~~~~~e~~~e~t~ 276 (472)
T COG4284 259 FLGFMAETNYEYLMETTD 276 (472)
T ss_pred HHHHHHhcCcceeEEEee
Confidence 678888888888775544
No 104
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.33 E-value=0.035 Score=54.86 Aligned_cols=131 Identities=14% Similarity=0.192 Sum_probs=80.8
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHhC--------------CCC-eEEEEccCcchHHH
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------------NIK-DLIVVVEGADAALR 64 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~~--------------gi~-~v~vv~~~~~~~~~ 64 (362)
+-+|+||||.|||| +...||.+++|+ |+.+++...+++... ++. ..+|.++... .+.
T Consensus 117 vavvlLAGGqGTRL----G~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T-~~~ 191 (493)
T PLN02435 117 LAVVLLSGGQGTRL----GSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFT-DEA 191 (493)
T ss_pred EEEEEeCCCccccc----CCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcch-hHH
Confidence 45788899999999 889999999885 789999988876331 121 2466666443 357
Q ss_pred HHHHHHhh--hc-CCcceEEEEc---------------------CCCCCHHHHHHHH-----HHhcC---CCcEEEEeCC
Q 018019 65 VGGWISAA--YV-DRLHVEVATV---------------------PEDVGTAGALRAI-----AHHLT---AKDVLVVSGD 112 (362)
Q Consensus 65 i~~~~~~~--~~-~~~~i~i~~~---------------------~~~~gt~~al~~~-----~~~i~---~~~~lv~~~D 112 (362)
..+++++. ++ ....+.+..| -.+.|.|+..... ++.+. -+++.+.+.|
T Consensus 192 T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 271 (493)
T PLN02435 192 TRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVD 271 (493)
T ss_pred HHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecc
Confidence 77888752 21 1122333222 1135665533322 23332 3577888888
Q ss_pred cc-c-CCChHHHHHHHHhcCCeEEEEEee
Q 018019 113 LV-S-DVPPGAVTAAHRRHDAVVTAMICS 139 (362)
Q Consensus 113 ~i-~-~~~l~~~l~~h~~~~a~~t~l~~~ 139 (362)
.+ . ..|. .++-.+..+++++.+-+.+
T Consensus 272 N~L~~~~DP-~flG~~~~~~~d~~~kVv~ 299 (493)
T PLN02435 272 NALVRVADP-TFLGYFIDKGVASAAKVVR 299 (493)
T ss_pred cccccccCH-HHHHHHHhcCCceEEEeee
Confidence 63 3 3443 4778888889988775443
No 105
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=97.21 E-value=0.0019 Score=56.15 Aligned_cols=84 Identities=21% Similarity=0.174 Sum_probs=61.6
Q ss_pred cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC--CcEEEEeC
Q 018019 34 RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA--KDVLVVSG 111 (362)
Q Consensus 34 ~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~ 111 (362)
+|||.|+++.+..+++.+++|+++.. .+..+... .++.++..+. .|.+.+++.+.+++.. +.++++.|
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~~----~~~~~~~~-----~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~ 99 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPDP----ALLEAARN-----LGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMA 99 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCH----HHHHHHHh-----cCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeC
Confidence 79999999999998888888887732 33333322 3566665443 4899999999877643 36999999
Q ss_pred C--cccCCChHHHHHHHH
Q 018019 112 D--LVSDVPPGAVTAAHR 127 (362)
Q Consensus 112 D--~i~~~~l~~~l~~h~ 127 (362)
| ++....+..+++.+.
T Consensus 100 D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 100 DLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCHHHHHHHHHhcc
Confidence 9 477778888888664
No 106
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.86 E-value=0.036 Score=44.48 Aligned_cols=97 Identities=21% Similarity=0.132 Sum_probs=65.5
Q ss_pred eeeeCCc-chHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~ 104 (362)
++|..|+ +++.++++++.+.+ ..+++|+.+... +...+.+.+.......+.........|.+.++..+.+....+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d 79 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGST--DGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARGE 79 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCC--ccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcCC
Confidence 4677776 99999999999987 778888877543 234444443321112234444556789999999888877667
Q ss_pred cEEEEeCCcccCCC-hHHHHHHH
Q 018019 105 DVLVVSGDLVSDVP-PGAVTAAH 126 (362)
Q Consensus 105 ~~lv~~~D~i~~~~-l~~~l~~h 126 (362)
.++++.+|.+...+ +..++..+
T Consensus 80 ~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 80 YILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred EEEEECCCCccCccHHHHHHHHH
Confidence 89999999877665 44443443
No 107
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=96.74 E-value=0.0097 Score=55.42 Aligned_cols=131 Identities=14% Similarity=0.163 Sum_probs=78.8
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCeeeeee---CCcchHHHHHHHHHhC--------CC-CeEEEEccCcchHHHHHHHHHh
Q 018019 4 QVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELS--------NI-KDLIVVVEGADAALRVGGWISA 71 (362)
Q Consensus 4 ~avIlA~G~gtrl~pl~t~~~pK~llpv---~g~plI~~~l~~l~~~--------gi-~~v~vv~~~~~~~~~i~~~~~~ 71 (362)
.+|+||||.|||| +...||.++|| .|+.++++.++++... +. -..+|.++... .+...+++++
T Consensus 2 a~vllaGG~GTRL----G~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~T-h~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGGLGERL----GYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDT-HSKTLKLLEE 76 (315)
T ss_pred EEEEecCCCcccc----CCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCch-hHHHHHHHHH
Confidence 4689999999999 88999999999 4889999999888552 22 23566666443 3577788874
Q ss_pred --hhc-CCcceEE--------EE---------c--C-----CCCCHHHHHHHH-----HHhcC---CCcEEEEeCCc-cc
Q 018019 72 --AYV-DRLHVEV--------AT---------V--P-----EDVGTAGALRAI-----AHHLT---AKDVLVVSGDL-VS 115 (362)
Q Consensus 72 --~~~-~~~~i~i--------~~---------~--~-----~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~-i~ 115 (362)
++. ++..+.+ +. . + .+.|.|+-.... ++.+. .+++.+..-|. +.
T Consensus 77 n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~ 156 (315)
T cd06424 77 NNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALA 156 (315)
T ss_pred CCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhh
Confidence 221 1112221 11 0 0 134555433322 22222 25666666673 33
Q ss_pred CCChHHHHHHHHhcCCeEEEEEee
Q 018019 116 DVPPGAVTAAHRRHDAVVTAMICS 139 (362)
Q Consensus 116 ~~~l~~~l~~h~~~~a~~t~l~~~ 139 (362)
....-.++-.+..++++++..+.+
T Consensus 157 ~~adP~fiG~~~~~~~d~~~k~v~ 180 (315)
T cd06424 157 FKAIPAVLGVSATKSLDMNSLTVP 180 (315)
T ss_pred hccChhhEEEEecCCCceEeEEEe
Confidence 333344666677778888776554
No 108
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.70 E-value=0.04 Score=56.05 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=81.7
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHhC-----------CC-CeEEEEccCcchHHHHHH
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS-----------NI-KDLIVVVEGADAALRVGG 67 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~~-----------gi-~~v~vv~~~~~~~~~i~~ 67 (362)
+.+|+||||.|||| +...||.++|++ |+++++..++++... ++ --.+|.++... .+...+
T Consensus 129 vavllLaGGlGTRL----G~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T-~~~T~~ 203 (615)
T PLN02830 129 AAFVLVAGGLGERL----GYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDT-HARTLK 203 (615)
T ss_pred EEEEEecCCccccc----CCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcch-hHHHHH
Confidence 45788999999999 888999999984 789999999987543 11 13566666443 357778
Q ss_pred HHHh--hhc-CCcceEEEEc----------------C--------CCCCHHHHHHHH-----HHhcC---CCcEEEEeCC
Q 018019 68 WISA--AYV-DRLHVEVATV----------------P--------EDVGTAGALRAI-----AHHLT---AKDVLVVSGD 112 (362)
Q Consensus 68 ~~~~--~~~-~~~~i~i~~~----------------~--------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D 112 (362)
++++ ++. .+..+.+..| + .+.|.|+-.... ++.+. .+++.+.+.|
T Consensus 204 ~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vD 283 (615)
T PLN02830 204 LLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDT 283 (615)
T ss_pred HHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEecc
Confidence 8875 221 1112222111 1 123444432222 22222 3577888888
Q ss_pred c-ccCCChHHHHHHHHhcCCeEEEEEeee
Q 018019 113 L-VSDVPPGAVTAAHRRHDAVVTAMICSV 140 (362)
Q Consensus 113 ~-i~~~~l~~~l~~h~~~~a~~t~l~~~~ 140 (362)
. +.....-.++-.+..+++++.+.+.+.
T Consensus 284 N~L~~~Adp~flG~~~~~~~d~~~kvv~K 312 (615)
T PLN02830 284 NGLVFKAIPAALGVSATKGFDMNSLAVPR 312 (615)
T ss_pred chhhhcccHHHhHHHHhcCCceEEEEEEC
Confidence 4 222223667888888899988876653
No 109
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=96.15 E-value=0.11 Score=42.61 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=73.4
Q ss_pred eeeeCCc-chHHHHHHHHHhC--CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019 28 LLPVANR-PVLSYVLEQLELS--NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~--gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~ 104 (362)
.+|.-|+ ..|..+|+.+.+. ...+|+|+-+... +...+.+.++......+.++..+...|.+.++..+.+....+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~ 80 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGST--DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGE 80 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S--SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SS
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccc--ccccccccccccccccccccccccccccccccccccccccee
Confidence 4677777 7889999988776 3456777765431 233444444322235688888777789899999998888778
Q ss_pred cEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEEE
Q 018019 105 DVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAMI 137 (362)
Q Consensus 105 ~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l~ 137 (362)
.++++.+|.+...+ +..+++.+.+.+.++.+..
T Consensus 81 ~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 81 YILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 89999999655544 8889998888777655443
No 110
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=93.70 E-value=1 Score=37.93 Aligned_cols=105 Identities=18% Similarity=0.136 Sum_probs=64.9
Q ss_pred eeeCCc-chHHHHHHHHHhC----CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019 29 LPVANR-PVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (362)
Q Consensus 29 lpv~g~-plI~~~l~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~ 103 (362)
+|..+. ..|..+|+.+.+. ...+|+|+-+... +...+.+.++......+.++..+...|.+.++..+.+....
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~--d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~g 80 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGST--DGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAARG 80 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCC--CChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhcC
Confidence 455555 5677777887665 2567777755332 23333343321111234556566678888998888887766
Q ss_pred CcEEEEeCCccc-CCChHHHHHHHHhcCCeEEE
Q 018019 104 KDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 104 ~~~lv~~~D~i~-~~~l~~~l~~h~~~~a~~t~ 135 (362)
+.++++.+|... +..+..+++.....+.++.+
T Consensus 81 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 81 DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 789999999544 44478888875555655543
No 111
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.46 E-value=2.2 Score=37.95 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=67.8
Q ss_pred CCCCCe--eeeeeCCc-chHHHHHHHHHhCCC----CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHH
Q 018019 21 SKEVPK--ALLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGA 93 (362)
Q Consensus 21 t~~~pK--~llpv~g~-plI~~~l~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~a 93 (362)
....|+ -++|..|. ..|...|+.+..... -+++|+..... +...+.+.+.. .. .+.++..+...|-+.+
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~-~~-~v~~i~~~~~~g~~~a 100 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGST--DGTAEIAREYA-DK-GVKLLRFPERRGKAAA 100 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC--ccHHHHHHHHh-hC-cEEEEEcCCCCChHHH
Confidence 455666 56788887 678888888866532 25777665332 23344444321 12 4666666666888889
Q ss_pred HHHHHHhcCCCcEEEEeCCcccCCC-hHHHHHHHH
Q 018019 94 LRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHR 127 (362)
Q Consensus 94 l~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~ 127 (362)
+..+.+....+.++++.+|.+...+ +..+++...
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhc
Confidence 8888887777789999999766544 777777764
No 112
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.24 E-value=2.3 Score=34.68 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=64.6
Q ss_pred eeeeCCc-chHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~ 104 (362)
++|.-++ .++..+++++.+.. ..+++|+..... +...+.+.... ..+.++..+...|.+.++..+.+....+
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~--~~~~~~~~~~~---~~~~~~~~~~~~g~~~a~n~~~~~~~~~ 76 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNAST--DGSVELLRELF---PEVRLIRNGENLGFGAGNNQGIREAKGD 76 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCC--chHHHHHHHhC---CCeEEEecCCCcChHHHhhHHHhhCCCC
Confidence 4566676 78999999997763 456777765432 23344444332 1355666566789999999888888767
Q ss_pred cEEEEeCCcccCCC-hHHHHHHHHhc
Q 018019 105 DVLVVSGDLVSDVP-PGAVTAAHRRH 129 (362)
Q Consensus 105 ~~lv~~~D~i~~~~-l~~~l~~h~~~ 129 (362)
.++++..|.+...+ +..+++.+...
T Consensus 77 ~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 77 YVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred EEEEECCCcEECccHHHHHHHHHHhC
Confidence 78888888655444 67777665443
No 113
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=92.48 E-value=0.068 Score=47.84 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.0
Q ss_pred EEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 018019 304 VYIASNSKYCVRLNSIQAFMDINRDVIGE 332 (362)
Q Consensus 304 ~~~~~~~~y~~rin~~~~Y~~~n~~~l~~ 332 (362)
+|.+ +|||.-| .+|.++|+++|+.
T Consensus 42 ~~~~--~gyW~Di---~~yl~an~diL~~ 65 (231)
T TIGR03532 42 SGVL--FGEWEDI---EPFIEANKDKIKD 65 (231)
T ss_pred cEEE--EEeHHHH---HHHHHHhHhhhcc
Confidence 4555 7888777 9999999999975
No 114
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=92.46 E-value=3.8 Score=34.89 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=63.8
Q ss_pred eeeeCCcc---hHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcC
Q 018019 28 LLPVANRP---VLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (362)
Q Consensus 28 llpv~g~p---lI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~ 102 (362)
++|+.++. .|..+|+.+.... ..+++|+-.... .+...+.+..+. .+.++.++..+...|.+.+...+.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss-~d~t~~~~~~~~-~~~~i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPV-TQSLNEVLEEFK-RKLPLKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCC-chhHHHHHHHHH-hcCCeEEEEcCccccHHHHHHHHHHhcC
Confidence 56777653 8999999997754 246666644321 234444444332 1234666655566899999888887776
Q ss_pred CCcEEEEeCCccc-CCChHHHHHHHHh
Q 018019 103 AKDVLVVSGDLVS-DVPPGAVTAAHRR 128 (362)
Q Consensus 103 ~~~~lv~~~D~i~-~~~l~~~l~~h~~ 128 (362)
.+.++++.+|.+. +.-+..+++...+
T Consensus 81 gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 81 YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 6778899999644 4457777776644
No 115
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=92.30 E-value=1.8 Score=37.74 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=64.0
Q ss_pred eeeeCCc-chHHHHHHHHHhCC---CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019 28 LLPVANR-PVLSYVLEQLELSN---IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~g---i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~ 103 (362)
++|.-+. ..|..+|+.+.+.- .-+|+||-+... +...+.++++......+.++......|-+.++..+.+....
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~--d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a~g 79 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSP--DGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAARG 79 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--CChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHcCC
Confidence 4566666 67788888886643 245666654321 22233333321111234555556678999999888887777
Q ss_pred CcEEEEeCCcccCC-ChHHHHHHHHhcCCeE
Q 018019 104 KDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV 133 (362)
Q Consensus 104 ~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~ 133 (362)
+.++++.+|..... .+..+++.....+.++
T Consensus 80 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 110 (224)
T cd06442 80 DVIVVMDADLSHPPEYIPELLEAQLEGGADL 110 (224)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCCCCE
Confidence 78889999965543 4777777655555554
No 116
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=92.05 E-value=2 Score=37.30 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=62.2
Q ss_pred eeeeCCc-chHHHHHHHHHhC------CCCeEEEEccCcchHHHHHHHHHhhhcCC-cceEEEEcCCCCCHHHHHHHHHH
Q 018019 28 LLPVANR-PVLSYVLEQLELS------NIKDLIVVVEGADAALRVGGWISAAYVDR-LHVEVATVPEDVGTAGALRAIAH 99 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~------gi~~v~vv~~~~~~~~~i~~~~~~~~~~~-~~i~i~~~~~~~gt~~al~~~~~ 99 (362)
.+|.-|. .-|..+|+.+.+. ..-+|+|+-+... +...+.++++.... ..+.++......|.+.++..+.+
T Consensus 2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~--D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~ 79 (211)
T cd04188 2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSK--DGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGML 79 (211)
T ss_pred EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC--CchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHH
Confidence 3566664 5666666666543 2336666644321 12223333221111 11355555566899999999988
Q ss_pred hcCCCcEEEEeCCcccC-CChHHHHHHHHhcCCeEEE
Q 018019 100 HLTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 100 ~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a~~t~ 135 (362)
....+.++++.+|...+ ..+..+++.....+.++.+
T Consensus 80 ~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 80 AARGDYILFADADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred HhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 77778899999996544 4577787775555555544
No 117
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=91.65 E-value=3.3 Score=33.64 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=61.3
Q ss_pred eeeeCCc-chHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhcCC-cceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDR-LHVEVATVPEDVGTAGALRAIAHHLTA 103 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~-~~i~i~~~~~~~gt~~al~~~~~~i~~ 103 (362)
.+|.-++ ..|..+|+.+.+.. ..+++|+-.... +...+.+..+.... ..+.+.......|.+.++..+.+....
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~ 79 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGST--DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKG 79 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCc--cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCC
Confidence 3566676 78889999998764 346666655332 23333444322111 123344445568888888888888777
Q ss_pred CcEEEEeCCcccCCC-hHHHHHHHHh
Q 018019 104 KDVLVVSGDLVSDVP-PGAVTAAHRR 128 (362)
Q Consensus 104 ~~~lv~~~D~i~~~~-l~~~l~~h~~ 128 (362)
+.++++.+|.+...+ +..++..+.+
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhcc
Confidence 788999999655444 6666455544
No 118
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=91.64 E-value=4.2 Score=36.12 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=64.5
Q ss_pred eeeeCCc-chHHHHHHHHHhCCCC----eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc--CCCCCHHHHHHHHHHh
Q 018019 28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATV--PEDVGTAGALRAIAHH 100 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~--~~~~gt~~al~~~~~~ 100 (362)
++|.-|. -.|..+|+++.+.... +|+|+..... +...+.++++.. .....++.. ....|-+.++..+.+.
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~--d~t~~i~~~~~~-~~~~~i~~~~~~~~~G~~~a~n~g~~~ 82 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDD--EETIAAARALRL-PSIFRVVVVPPSQPRTKPKACNYALAF 82 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCC--chHHHHHHHhcc-CCCeeEEEecCCCCCchHHHHHHHHHh
Confidence 4677665 6788888888765432 4666654322 233344443311 112333332 3456888899988887
Q ss_pred cCCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 018019 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (362)
Q Consensus 101 i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l 136 (362)
...+.++++.+|.+...+ +..+++.+.+.+.++.++
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 766778899999766554 678888776544555544
No 119
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=91.16 E-value=4.2 Score=34.66 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=59.8
Q ss_pred eeeeCC-c-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019 28 LLPVAN-R-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (362)
Q Consensus 28 llpv~g-~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~ 103 (362)
.+|.-+ . ..|..+|+++.+.... +|+|+-+... ...+...+..+......+.++..+...|.+.++-.+.+....
T Consensus 6 ii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~-d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~ 84 (202)
T cd04184 6 VMPVYNTPEKYLREAIESVRAQTYPNWELCIADDAST-DPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELATG 84 (202)
T ss_pred EEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC-ChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhcC
Confidence 355544 4 6788888888765432 5666644321 112333333221112245555556668888888888877766
Q ss_pred CcEEEEeCCcccCCC-hHHHHHHH
Q 018019 104 KDVLVVSGDLVSDVP-PGAVTAAH 126 (362)
Q Consensus 104 ~~~lv~~~D~i~~~~-l~~~l~~h 126 (362)
+.++++.+|.+...+ +..+++.+
T Consensus 85 d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 85 EFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred CEEEEECCCCcCChHHHHHHHHHH
Confidence 778889899655544 77788776
No 120
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=91.06 E-value=3 Score=36.80 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=62.3
Q ss_pred eeeeCCc-chHHHHHHHHHhCCC----CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcC
Q 018019 28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~ 102 (362)
++|.-|+ +.|..+|+.+..... -+|+|+-+... +...+.++........+.++. ....|-+.++..+.+...
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~--d~~~~~~~~~~~~~~~v~~i~-~~~~~~~~a~N~g~~~a~ 81 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGST--DGTREIVQEYAAKDPRIRLID-NPKRIQSAGLNIGIRNSR 81 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCC--ccHHHHHHHHHhcCCeEEEEe-CCCCCchHHHHHHHHHhC
Confidence 4566665 778888999976644 36776654332 234444443321212344443 334566677777777776
Q ss_pred CCcEEEEeCCcccCC-ChHHHHHHHHhcCCeE
Q 018019 103 AKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV 133 (362)
Q Consensus 103 ~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~ 133 (362)
.+.++++.+|.+... -+..+++.+.+.+.++
T Consensus 82 ~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 82 GDIIIRVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 677889999965543 4777887665555443
No 121
>PRK10073 putative glycosyl transferase; Provisional
Probab=90.86 E-value=3.2 Score=39.16 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=66.8
Q ss_pred eeeeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019 27 ALLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (362)
Q Consensus 27 ~llpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~ 103 (362)
-.+|+-|. ..|..+|+++...... +|+|+-.... +...+.+.++......+.++.+ +..|.+.+.-.+++....
T Consensus 10 VIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgSt--D~t~~i~~~~~~~~~~i~vi~~-~n~G~~~arN~gl~~a~g 86 (328)
T PRK10073 10 IIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGST--DNSVEIAKHYAENYPHVRLLHQ-ANAGVSVARNTGLAVATG 86 (328)
T ss_pred EEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCC--ccHHHHHHHHHhhCCCEEEEEC-CCCChHHHHHHHHHhCCC
Confidence 34677665 7999999999876443 5666644221 1222333332111124555543 457888888888887777
Q ss_pred CcEEEEeCC-cccCCChHHHHHHHHhcCCeEEE
Q 018019 104 KDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 104 ~~~lv~~~D-~i~~~~l~~~l~~h~~~~a~~t~ 135 (362)
++++++.+| .+.+.-+..+++...+.+.++.+
T Consensus 87 ~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 87 KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 788999998 45555577888877666667654
No 122
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=89.81 E-value=8.9 Score=35.35 Aligned_cols=102 Identities=15% Similarity=0.042 Sum_probs=63.8
Q ss_pred eeeeCCc--chHHHHHHHHHhCCC----CeEEEEccCcchHHHHHHHHHhhh-c-CCcceEEEEcCCCCCHHHHHHHHHH
Q 018019 28 LLPVANR--PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAY-V-DRLHVEVATVPEDVGTAGALRAIAH 99 (362)
Q Consensus 28 llpv~g~--plI~~~l~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~-~-~~~~i~i~~~~~~~gt~~al~~~~~ 99 (362)
.+|.-|. ..|..+|+++....- .+|+||-+... +...+.+.... . ....+.++..+...|-+.+.-.+++
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~--d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~ 80 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSD--KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGAR 80 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC--chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3566665 488888888876431 37777755322 12222221110 0 1124667666667888888888887
Q ss_pred hcCCCcEEEEeCCcccC-CChHHHHHHHHhcCC
Q 018019 100 HLTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDA 131 (362)
Q Consensus 100 ~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a 131 (362)
....+.++++++|.+.. .-+..+++.......
T Consensus 81 ~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 81 AATGDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred HccCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 77678899999996554 448888888766544
No 123
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=89.63 E-value=4.5 Score=33.92 Aligned_cols=102 Identities=22% Similarity=0.199 Sum_probs=57.7
Q ss_pred eeeCCc-chHHHHHHHHHhC-----CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcC
Q 018019 29 LPVANR-PVLSYVLEQLELS-----NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (362)
Q Consensus 29 lpv~g~-plI~~~l~~l~~~-----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~ 102 (362)
+|.-+. ..|..+|+.+.+. ..-+|+|+-+... +...+.++.+......+.++......|.+.++..+.+...
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a~ 80 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGST--DRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHAR 80 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCC--ccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhcC
Confidence 455554 3455555544321 2236777655322 1222333322111124556555556889999998888777
Q ss_pred CCcEEEEeCCcccCC-ChHHHHHHHHhcCCeE
Q 018019 103 AKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV 133 (362)
Q Consensus 103 ~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~ 133 (362)
.+.++++.+|...+. .+..+++. ...+.++
T Consensus 81 ~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~ 111 (181)
T cd04187 81 GDAVITMDADLQDPPELIPEMLAK-WEEGYDV 111 (181)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcE
Confidence 788899999965544 46777776 3444444
No 124
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=88.85 E-value=7.6 Score=38.29 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=67.3
Q ss_pred eeeeeCCc-chHHHHHHHHHhCCC--CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019 27 ALLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (362)
Q Consensus 27 ~llpv~g~-plI~~~l~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~ 103 (362)
-++|..|. .-|..+++++.+... -+|+|+.+... +...+.+.+.......+.++......|-+.++..+......
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~--D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl~~a~~ 156 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSS--DDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGAAAARS 156 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHHHhCCC
Confidence 56788887 678889999876532 36777755332 22223333221112246666656668888999888877766
Q ss_pred CcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 018019 104 KDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (362)
Q Consensus 104 ~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l 136 (362)
+.++++.+|.+.+.+ +..+++.+.+ +..+.++
T Consensus 157 d~iv~lDAD~~~~~d~L~~lv~~~~~-~~~~g~v 189 (444)
T PRK14583 157 EYLVCIDGDALLDKNAVPYLVAPLIA-NPRTGAV 189 (444)
T ss_pred CEEEEECCCCCcCHHHHHHHHHHHHh-CCCeEEE
Confidence 789999999766554 6677766543 3334333
No 125
>PRK10018 putative glycosyl transferase; Provisional
Probab=87.68 E-value=17 Score=33.42 Aligned_cols=99 Identities=9% Similarity=0.095 Sum_probs=62.9
Q ss_pred eeeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019 28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~ 104 (362)
.+|.-|. ..|..+|+++.+.... +++|+-......+.+.+++... ....+.++..+...|.+.+.-.+++....+
T Consensus 10 Iip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~--~~~ri~~i~~~~n~G~~~a~N~gi~~a~g~ 87 (279)
T PRK10018 10 YMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTAL--NDPRITYIHNDINSGACAVRNQAIMLAQGE 87 (279)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHc--CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3566665 7788899888766443 5666644222123444544432 112466666566789888888888877777
Q ss_pred cEEEEeCCccc-CCChHHHHHHHHh
Q 018019 105 DVLVVSGDLVS-DVPPGAVTAAHRR 128 (362)
Q Consensus 105 ~~lv~~~D~i~-~~~l~~~l~~h~~ 128 (362)
.++++.+|-+. +..+..+++...+
T Consensus 88 ~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 88 YITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHh
Confidence 88899998544 4457777776544
No 126
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.64 E-value=7.4 Score=32.70 Aligned_cols=96 Identities=18% Similarity=0.103 Sum_probs=59.3
Q ss_pred eeeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019 28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~ 104 (362)
.+|.-++ ..|..+|+++.+.... +|+|+-+... +...+.+.+.. .. +..+......|.+.++..+++....+
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~--d~~~~~~~~~~-~~--~~~~~~~~~~g~~~a~n~~~~~a~~~ 77 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGST--DGTVDIIKKYE-DK--ITYWISEPDKGIYDAMNKGIALATGD 77 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCC--ccHHHHHHHhH-hh--cEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 3555555 6888999999776554 5666633221 23344444321 11 22333345678889998888887777
Q ss_pred cEEEEeCCc-ccCCChHHHHHHHHh
Q 018019 105 DVLVVSGDL-VSDVPPGAVTAAHRR 128 (362)
Q Consensus 105 ~~lv~~~D~-i~~~~l~~~l~~h~~ 128 (362)
+++++.+|. +.+..+..++.....
T Consensus 78 ~v~~ld~D~~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 78 IIGFLNSDDTLLPGALLAVVAAFAE 102 (202)
T ss_pred EEEEeCCCcccCchHHHHHHHHHHh
Confidence 888999885 555567777744443
No 127
>PRK11204 N-glycosyltransferase; Provisional
Probab=86.79 E-value=9.6 Score=37.05 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred eeeeeCCc-chHHHHHHHHHhCCC--CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019 27 ALLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA 103 (362)
Q Consensus 27 ~llpv~g~-plI~~~l~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~ 103 (362)
-++|.-|. ..|..+++++.+... -+|+|+-+... +...+.+++......++.++..++..|-++++..+.+....
T Consensus 58 ViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~--d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~~a~~ 135 (420)
T PRK11204 58 ILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSS--DNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAAAARS 135 (420)
T ss_pred EEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35677776 788999999877543 36666654322 22223333221111246666656668889999988887767
Q ss_pred CcEEEEeCCcccCCC-hHHHHHHHHh
Q 018019 104 KDVLVVSGDLVSDVP-PGAVTAAHRR 128 (362)
Q Consensus 104 ~~~lv~~~D~i~~~~-l~~~l~~h~~ 128 (362)
+.++++.+|.+.+.+ +..+++.+.+
T Consensus 136 d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 136 EYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred CEEEEECCCCCCChhHHHHHHHHHHh
Confidence 789999999755544 7777777644
No 128
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=86.63 E-value=8.4 Score=34.28 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=61.6
Q ss_pred eeeeCCc-chHHHHHHHHHhC----CCCeEEEEccCcchHHHHHHHHHhhhcC--CcceEEEEcCCCCCHHHHHHHHHHh
Q 018019 28 LLPVANR-PVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVD--RLHVEVATVPEDVGTAGALRAIAHH 100 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~--~~~i~i~~~~~~~gt~~al~~~~~~ 100 (362)
.+|.-|. .-|..+++.+.+. .--+|+|+-+... +...+.+.++... ...+.++..+...|-+.++..+...
T Consensus 14 vIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~--D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~ 91 (243)
T PLN02726 14 IVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSP--DGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKH 91 (243)
T ss_pred EEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCC--CCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 4566665 5666666666432 1225666644221 2223333322110 1234444445567888899888887
Q ss_pred cCCCcEEEEeCCcccCC-ChHHHHHHHHhcCCeEEE
Q 018019 101 LTAKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 101 i~~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~t~ 135 (362)
...+.++++.+|...+. .+..+++...+.++++..
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 127 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT 127 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 76678899999975543 477788776666666543
No 129
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=86.44 E-value=18 Score=35.66 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=62.6
Q ss_pred eeeeeCCc-chHHHHHHHHHhCCCC----eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhc
Q 018019 27 ALLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL 101 (362)
Q Consensus 27 ~llpv~g~-plI~~~l~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i 101 (362)
-++|.-|. ..|..+++++.+.... +|+|+-+... |...+.+.+.......+.+...+...|-+.|+..+.+..
T Consensus 53 VIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~St--D~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~~s 130 (439)
T TIGR03111 53 IIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQST--DDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNS 130 (439)
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCC--hhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHc
Confidence 34677776 8889999999776532 4555544221 232333322111112344544455688899999998877
Q ss_pred CCCcEEEEeCCcccCCC-hHHHHHHHHh
Q 018019 102 TAKDVLVVSGDLVSDVP-PGAVTAAHRR 128 (362)
Q Consensus 102 ~~~~~lv~~~D~i~~~~-l~~~l~~h~~ 128 (362)
..+.++++.+|.+.+.+ +..+++.+.+
T Consensus 131 ~g~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 131 IGKYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred cCCEEEEECCCCCcChHHHHHHHHHHHh
Confidence 77778899999766554 6777777654
No 130
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.16 E-value=14 Score=31.98 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=58.8
Q ss_pred eeeeCCc-chHHHHHHHHHhCCC----CeEEEEccCcchHHHHHHHHH-hhhcCCcceEEEEcC--CCCCHHHHHHHHHH
Q 018019 28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWIS-AAYVDRLHVEVATVP--EDVGTAGALRAIAH 99 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~-~~~~~~~~i~i~~~~--~~~gt~~al~~~~~ 99 (362)
++|..|+ ..|..+|+.+..... -+|+|+-+... +...+.+. ........+.++..+ ...|-+.++..+..
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~ 79 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHST--DGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIK 79 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC--cChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHH
Confidence 4677776 678899999866532 35666654321 12223332 111112244444333 23566677777777
Q ss_pred hcCCCcEEEEeCCcccCCC-hHHHHHHHHhcCC
Q 018019 100 HLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDA 131 (362)
Q Consensus 100 ~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a 131 (362)
....+.++++.+|.+...+ +..+++.+...+.
T Consensus 80 ~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 80 AAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred HhcCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 6666788999999655544 6777776655443
No 131
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=84.74 E-value=26 Score=30.59 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=55.5
Q ss_pred eeeeCCc-chHHHHHHHHHhCCCC----eEEEEccCcch-HHHHHHHHHhhhcCCcceEEEEcCCCCC-HHHHHHHHHHh
Q 018019 28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADA-ALRVGGWISAAYVDRLHVEVATVPEDVG-TAGALRAIAHH 100 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~gi~----~v~vv~~~~~~-~~~i~~~~~~~~~~~~~i~i~~~~~~~g-t~~al~~~~~~ 100 (362)
.+|.-|. ..|...|+.+.+.... +|+|+-+..+. .+.+.++...+......+..+...+..| .+.++..+...
T Consensus 6 iIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~ 85 (232)
T cd06437 6 QLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKV 85 (232)
T ss_pred EEecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHh
Confidence 4667665 7889999999764322 45444332221 1223333333221123344444344456 46778777777
Q ss_pred cCCCcEEEEeCCcccCCC-hHHHHH
Q 018019 101 LTAKDVLVVSGDLVSDVP-PGAVTA 124 (362)
Q Consensus 101 i~~~~~lv~~~D~i~~~~-l~~~l~ 124 (362)
...+.++++.+|.+...+ +..+..
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~ 110 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPP 110 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhh
Confidence 767889999999766555 555443
No 132
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=83.77 E-value=23 Score=30.49 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=63.0
Q ss_pred CcchHHHHHHHH-HhCCCCeEEEEccCc--chHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEE
Q 018019 33 NRPVLSYVLEQL-ELSNIKDLIVVVEGA--DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV 109 (362)
Q Consensus 33 g~plI~~~l~~l-~~~gi~~v~vv~~~~--~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~ 109 (362)
|-|++-|.+..+ .+.|.+--+|++... +-...+.+.++..+. ..++.+..-....|.+.|...++.+...+.++++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg-~d~i~l~pR~~klGLgtAy~hgl~~a~g~fiviM 95 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYG-EDNILLKPRTKKLGLGTAYIHGLKHATGDFIVIM 95 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhC-CCcEEEEeccCcccchHHHHhhhhhccCCeEEEE
Confidence 346777777666 445665444444322 111133333433332 1234444334568888888899888876778889
Q ss_pred eCCcc-cCCChHHHHHHHHhcCCeEEEEEe
Q 018019 110 SGDLV-SDVPPGAVTAAHRRHDAVVTAMIC 138 (362)
Q Consensus 110 ~~D~i-~~~~l~~~l~~h~~~~a~~t~l~~ 138 (362)
.+|+- -+.-+.++++..++.+-+++.-+.
T Consensus 96 DaDlsHhPk~ipe~i~lq~~~~~div~GTR 125 (238)
T KOG2978|consen 96 DADLSHHPKFIPEFIRLQKEGNYDIVLGTR 125 (238)
T ss_pred eCccCCCchhHHHHHHHhhccCcceeeeee
Confidence 99963 345577888887776667766544
No 133
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=83.73 E-value=1.3 Score=43.24 Aligned_cols=38 Identities=29% Similarity=0.547 Sum_probs=30.5
Q ss_pred ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCC---cchHHHHHHHH
Q 018019 3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN---RPVLSYVLEQL 44 (362)
Q Consensus 3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g---~plI~~~l~~l 44 (362)
..++++|||.|||+ ....||.+.|++. +.++++..+.+
T Consensus 98 ~a~~llaGgqgtRL----g~~~pkg~~~~G~~~~~slf~~qae~i 138 (477)
T KOG2388|consen 98 VAVVLLAGGQGTRL----GSSGPKGCYPIGLPSGKSLFQIQAERI 138 (477)
T ss_pred ceEEEeccCceeee----ccCCCcceeecCCccccchhhhhHHHH
Confidence 46899999999999 8899999999984 45776655544
No 134
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=83.42 E-value=16 Score=34.46 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=61.4
Q ss_pred eeeCCc-chHHHHHHHHHhC----------CCCeEEEEccC-cchHHH-HHHHHHhhhcCCcceEEEEcCCCCCHHHHHH
Q 018019 29 LPVANR-PVLSYVLEQLELS----------NIKDLIVVVEG-ADAALR-VGGWISAAYVDRLHVEVATVPEDVGTAGALR 95 (362)
Q Consensus 29 lpv~g~-plI~~~l~~l~~~----------gi~~v~vv~~~-~~~~~~-i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~ 95 (362)
+|.-|. +-|..+|+.+.+. +--+|+||-+. .+.... +.++.........++.++..+...|-+.|+.
T Consensus 76 IP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~ 155 (333)
T PTZ00260 76 IPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVR 155 (333)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHH
Confidence 566664 6677777766431 12467776542 221112 2222221100112466666666789999999
Q ss_pred HHHHhcCCCcEEEEeCCcccC-CChHHHHHHHHh---cCCeEEE
Q 018019 96 AIAHHLTAKDVLVVSGDLVSD-VPPGAVTAAHRR---HDAVVTA 135 (362)
Q Consensus 96 ~~~~~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~---~~a~~t~ 135 (362)
.+......+.++++.+|...+ .++..+++...+ .+.++.+
T Consensus 156 ~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~ 199 (333)
T PTZ00260 156 IGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVF 199 (333)
T ss_pred HHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEE
Confidence 888776667788999997554 456777666543 4444433
No 135
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=82.23 E-value=33 Score=30.13 Aligned_cols=94 Identities=16% Similarity=0.075 Sum_probs=60.1
Q ss_pred eeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCCc
Q 018019 27 ALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (362)
Q Consensus 27 ~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~ 105 (362)
.++|.-|. ..|..+|+.+... .++|+|+-+... +...+.++. .++.++.. ...|-+.+...+++....+.
T Consensus 4 vii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gSt--D~t~~i~~~-----~~~~v~~~-~~~g~~~~~n~~~~~a~~d~ 74 (229)
T cd02511 4 VVIITKNEERNIERCLESVKWA-VDEIIVVDSGST--DRTVEIAKE-----YGAKVYQR-WWDGFGAQRNFALELATNDW 74 (229)
T ss_pred EEEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCC--ccHHHHHHH-----cCCEEEEC-CCCChHHHHHHHHHhCCCCE
Confidence 35666665 7888889888654 367887765332 233344442 24556554 55788888877888777778
Q ss_pred EEEEeCCcccCCC-hHHHHHHHHhc
Q 018019 106 VLVVSGDLVSDVP-PGAVTAAHRRH 129 (362)
Q Consensus 106 ~lv~~~D~i~~~~-l~~~l~~h~~~ 129 (362)
++++.+|-+...+ +..+.+...+.
T Consensus 75 vl~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 75 VLSLDADERLTPELADEILALLATD 99 (229)
T ss_pred EEEEeCCcCcCHHHHHHHHHHHhCC
Confidence 9999999655544 55555544433
No 136
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=82.21 E-value=18 Score=31.60 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=57.7
Q ss_pred eeeeCCc-c-hHHHHHHHHHhCCC--CeEEEEccCcchH---HHHHHHHHhhhcCCcceEEEEcCCCCCH-HHHHHHHHH
Q 018019 28 LLPVANR-P-VLSYVLEQLELSNI--KDLIVVVEGADAA---LRVGGWISAAYVDRLHVEVATVPEDVGT-AGALRAIAH 99 (362)
Q Consensus 28 llpv~g~-p-lI~~~l~~l~~~gi--~~v~vv~~~~~~~---~~i~~~~~~~~~~~~~i~i~~~~~~~gt-~~al~~~~~ 99 (362)
++|.-|. | +|...|+++.+... -+|+|+-+..... +.+.++.... ...+.++......|- ++++..+.+
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~---~~~i~~i~~~~~~G~~~~a~n~g~~ 79 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL---GERFRFFHVEPLPGAKAGALNYALE 79 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh---CCcEEEEEcCCCCCCchHHHHHHHH
Confidence 4677776 3 79999999987653 3566665433211 1222333321 123545544444563 778888877
Q ss_pred hcC--CCcEEEEeCCcccCC-ChHHHHHHHH
Q 018019 100 HLT--AKDVLVVSGDLVSDV-PPGAVTAAHR 127 (362)
Q Consensus 100 ~i~--~~~~lv~~~D~i~~~-~l~~~l~~h~ 127 (362)
... .+.++++.+|.+.+. -+..++....
T Consensus 80 ~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 80 RTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred hcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 654 367889999965544 4777777654
No 137
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=82.20 E-value=29 Score=29.11 Aligned_cols=97 Identities=24% Similarity=0.245 Sum_probs=58.1
Q ss_pred eeeeCCc-chHHHHHHHHHhCCC----CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE--cCCCCCHHHHHHHHHHh
Q 018019 28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT--VPEDVGTAGALRAIAHH 100 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~--~~~~~gt~~al~~~~~~ 100 (362)
++|.-|. ..|.-+|+++.+... -+|+|+..... +...+.+... ...++. .....|.+.++..+...
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~--D~t~~~~~~~-----~~~~~~~~~~~~~gk~~aln~g~~~ 74 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT--DDTAQVARAA-----GATVLERHDPERRGKGYALDFGFRH 74 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC--chHHHHHHHc-----CCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 4677775 788888888876533 35666655332 2333444332 122222 23346788888877665
Q ss_pred cC-----CCcEEEEeCCcccCCC-hHHHHHHHHhcCCe
Q 018019 101 LT-----AKDVLVVSGDLVSDVP-PGAVTAAHRRHDAV 132 (362)
Q Consensus 101 i~-----~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~ 132 (362)
.. .+.++++.+|...+.+ +..++..+.. +.+
T Consensus 75 a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~ 111 (183)
T cd06438 75 LLNLADDPDAVVVFDADNLVDPNALEELNARFAA-GAR 111 (183)
T ss_pred HHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCC
Confidence 52 4568899999766554 6777776643 444
No 138
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.19 E-value=19 Score=30.63 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=58.0
Q ss_pred eeeeCCc-chHHHHHHHHHhCCC--CeEEEEccCcchHHHHHHHHHhhhcCC-cceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019 28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDR-LHVEVATVPEDVGTAGALRAIAHHLTA 103 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~-~~i~i~~~~~~~gt~~al~~~~~~i~~ 103 (362)
++|.-|+ ..|..+|+++.+... -+|+|+-.... +...+.++.+.... ..+.+...+...|.+.++..+......
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~--d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g 80 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGST--DGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADG 80 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC--CCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCC
Confidence 4677776 688899999877543 25666654321 12223333221111 123344445567888888888776666
Q ss_pred CcEEEEeCCccc-CCChHHHHHH
Q 018019 104 KDVLVVSGDLVS-DVPPGAVTAA 125 (362)
Q Consensus 104 ~~~lv~~~D~i~-~~~l~~~l~~ 125 (362)
+.++++..|.+. +..+..+++.
T Consensus 81 ~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 81 DYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred CEEEEECCCcccChhHHHHHHHH
Confidence 778888888544 4447777776
No 139
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=81.64 E-value=20 Score=32.51 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=58.4
Q ss_pred chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhc---CCCcEEEEeC
Q 018019 35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---TAKDVLVVSG 111 (362)
Q Consensus 35 plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i---~~~~~lv~~~ 111 (362)
..|...++.+.+. ..+|+||=+.....+.+.+.+.. ...+.++..++..|-+.|...+++.. ..+.++++..
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~ 82 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQ 82 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECC
Confidence 4677777887765 45666665432111234333322 13566776667789998888887665 3477899999
Q ss_pred CcccCCC-hHHHHHHHHhcCCeEEE
Q 018019 112 DLVSDVP-PGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 112 D~i~~~~-l~~~l~~h~~~~a~~t~ 135 (362)
|.+.+.+ +..+++...+.+..+.+
T Consensus 83 D~~~~~~~l~~l~~~~~~~~~~~~~ 107 (281)
T TIGR01556 83 DSRPGNAFLAAQWKLLSAENGQACA 107 (281)
T ss_pred CCCCCHHHHHHHHHHHHhcCCceEE
Confidence 9766544 66677766544323333
No 140
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.64 E-value=26 Score=29.70 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=56.9
Q ss_pred eeeCCc-chHHHHHHHHHhCCC--CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhc---C
Q 018019 29 LPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---T 102 (362)
Q Consensus 29 lpv~g~-plI~~~l~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i---~ 102 (362)
+|.-|+ ..|..+|+.+.+... .+|+|+-+... +...+.+.+.. ...++.++..+...|.+.++..+.... .
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~--d~t~~~~~~~~-~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~ 79 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNAST--DGTAEWLTSLG-DLDNIVYLRLPENLGGAGGFYEGVRRAYELG 79 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCC--cchHHHHHHhc-CCCceEEEECccccchhhHHHHHHHHHhccC
Confidence 455554 678999999977532 36666654332 24445554432 122355665566677777666655433 2
Q ss_pred CCcEEEEeCCcccCCC-hHHHHHHHH
Q 018019 103 AKDVLVVSGDLVSDVP-PGAVTAAHR 127 (362)
Q Consensus 103 ~~~~lv~~~D~i~~~~-l~~~l~~h~ 127 (362)
.+.++++..|.+.+.+ +..+++...
T Consensus 80 ~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 80 YDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 4568888899766554 566666554
No 141
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=81.00 E-value=39 Score=32.53 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=61.1
Q ss_pred eeeeCCc-chHHHHHHHHHhCCC---CeEEEEccCcc-hHHHHHHHHHhhhcCCcceEEEEcCC-C---CCHHHHHHHHH
Q 018019 28 LLPVANR-PVLSYVLEQLELSNI---KDLIVVVEGAD-AALRVGGWISAAYVDRLHVEVATVPE-D---VGTAGALRAIA 98 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~gi---~~v~vv~~~~~-~~~~i~~~~~~~~~~~~~i~i~~~~~-~---~gt~~al~~~~ 98 (362)
.+|.-|. +.|...|+.+.+... -+|+|+-+... ...++.+.+...+.....+.++...+ + .|-+.++..+.
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~ 124 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI 124 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence 5677775 899999999977543 36777655322 11122222221111111355553221 2 35556777776
Q ss_pred HhcC-----CCcEEEEeCCcccCC-ChHHHHHHHHhcCCeE
Q 018019 99 HHLT-----AKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV 133 (362)
Q Consensus 99 ~~i~-----~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~ 133 (362)
+... .+.++++.+|...+. .+..+++...+.+.++
T Consensus 125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 6554 567889999976554 4788888776665543
No 142
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=80.60 E-value=37 Score=29.48 Aligned_cols=103 Identities=21% Similarity=0.204 Sum_probs=63.6
Q ss_pred eeeeCCc--chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCCc
Q 018019 28 LLPVANR--PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (362)
Q Consensus 28 llpv~g~--plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~ 105 (362)
++|.-|. +.|..+|+.+.+....+|+|+..... +...+.+.... ....+.++. ....|-+.++..+......+.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~--d~~~~~l~~~~-~~~~~~v~~-~~~~g~~~a~n~g~~~a~~d~ 80 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDD--EPYLSILSQTV-KYGGIFVIT-VPHPGKRRALAEGIRHVTTDI 80 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCC--hHHHHHHHhhc-cCCcEEEEe-cCCCChHHHHHHHHHHhCCCE
Confidence 4555554 68999999998765567777766432 23333332211 112343443 345777888887877776778
Q ss_pred EEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 018019 106 VLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (362)
Q Consensus 106 ~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l 136 (362)
++++.+|.+...+ +..+++.+. +..+.++
T Consensus 81 v~~lD~D~~~~~~~l~~l~~~~~--~~~v~~v 110 (235)
T cd06434 81 VVLLDSDTVWPPNALPEMLKPFE--DPKVGGV 110 (235)
T ss_pred EEEECCCceeChhHHHHHHHhcc--CCCEeEE
Confidence 9999999766554 777777665 3344444
No 143
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=79.11 E-value=36 Score=29.65 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=54.0
Q ss_pred eCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC---CcE
Q 018019 31 VANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA---KDV 106 (362)
Q Consensus 31 v~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~---~~~ 106 (362)
..+. ..|.-+|+.+.+. ..+|+|+=+..+ +........ ...++.++..+...|-+.+...+.+.... +.+
T Consensus 6 yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~--~~~~~~~~~---~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v 79 (237)
T cd02526 6 YNPDLSKLKELLAALAEQ-VDKVVVVDNSSG--NDIELRLRL---NSEKIELIHLGENLGIAKALNIGIKAALENGADYV 79 (237)
T ss_pred ecCCHHHHHHHHHHHhcc-CCEEEEEeCCCC--ccHHHHhhc---cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEE
Confidence 3455 7888899998776 556666644322 122222211 12356666666678888888777766543 788
Q ss_pred EEEeCCcccCCC-hHHHH
Q 018019 107 LVVSGDLVSDVP-PGAVT 123 (362)
Q Consensus 107 lv~~~D~i~~~~-l~~~l 123 (362)
+++.+|.+.+.+ +..++
T Consensus 80 ~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 80 LLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred EEECCCCCcCHhHHHHHH
Confidence 999999766544 56664
No 144
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=78.69 E-value=43 Score=28.97 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=63.3
Q ss_pred eeeeCCc--chHHHHHHHHHhCCCC----eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCC-HHHHHHHHHHh
Q 018019 28 LLPVANR--PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVG-TAGALRAIAHH 100 (362)
Q Consensus 28 llpv~g~--plI~~~l~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~g-t~~al~~~~~~ 100 (362)
.+|.-|. .+|...|+.+...... +|+|+-+.. .+...+.+..+. ....+.++..+...| .+.++..+.+.
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s--~d~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~ 82 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGR--RPELRALAAELG-VEYGYRYLTRPDNRHAKAGNLNNALAH 82 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCC--chhHHHHHHHhh-cccCceEEEeCCCCCCcHHHHHHHHHh
Confidence 4677775 3788899999876543 577765543 235555555432 122344554444444 45677777777
Q ss_pred cCCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 018019 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (362)
Q Consensus 101 i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l 136 (362)
...+.++++.+|.+.+.+ +..+++...+ +..+.++
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~~v 118 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLD-DPKVALV 118 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhc-CCCeEEE
Confidence 666788899999655544 6777766544 2334443
No 145
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=77.56 E-value=34 Score=28.30 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=55.4
Q ss_pred eeeeCCc-chHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhcC-CcceEEEEcC-CCCCHHHHHHHHHHhcC
Q 018019 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVD-RLHVEVATVP-EDVGTAGALRAIAHHLT 102 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~-~~~i~i~~~~-~~~gt~~al~~~~~~i~ 102 (362)
++|.-|+ ..|..+|+++.+.. ..+|+|+-.... +...+.+++.... ...+..+... ...|.+.++..+.+...
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~ 79 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGST--EETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK 79 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCc--hhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc
Confidence 3566665 67889999997642 346666654332 2333444432110 1122222222 23456667777777666
Q ss_pred CCcEEEEeCCcccCCC-hHHHHHHH
Q 018019 103 AKDVLVVSGDLVSDVP-PGAVTAAH 126 (362)
Q Consensus 103 ~~~~lv~~~D~i~~~~-l~~~l~~h 126 (362)
.+.++++.+|.+...+ +..+++.+
T Consensus 80 g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 80 GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 6788999999766554 56666654
No 146
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=76.84 E-value=1.9 Score=38.16 Aligned_cols=108 Identities=29% Similarity=0.340 Sum_probs=53.5
Q ss_pred ceEEEEeCCCC---CCCCCCCCC-CCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcc
Q 018019 3 FQVVVLAGGTS---KKLVPLVSK-EVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH 78 (362)
Q Consensus 3 ~~avIlA~G~g---trl~pl~t~-~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~ 78 (362)
|.+||+.-..+ |||.|..+. .|. .| -+-|+..++..+.. ++ |+|++... .+..... ...+
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~-~L----a~aMl~Dvl~al~~--v~-v~vVs~d~----~v~~~a~----~~~g 64 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEERE-AL----ALAMLRDVLAALRA--VD-VVVVSRDP----EVAALAR----ARLG 64 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHH-HH----HHHHHHHHHHHHHH---S-EEEEES------S-TTTTT-------S
T ss_pred CeEEEEcCCCCccccccCccCCHHHHH-HH----HHHHHHHHHHHHHh--cC-eEEeccch----hhhhhhh----hccC
Confidence 57888865443 677543110 000 00 14589999999977 66 77776632 2222111 1346
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHH
Q 018019 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR 127 (362)
Q Consensus 79 i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~ 127 (362)
+.++..+ ..|.-.++..+......+.++|+++| ++.+.++..++....
T Consensus 65 ~~vl~d~-~~gLN~Al~~a~~~~~~~~vlvl~aDLPll~~~dl~~~l~~~~ 114 (217)
T PF01983_consen 65 AEVLPDP-GRGLNAALNAALAAAGDDPVLVLPADLPLLTPEDLDALLAAAG 114 (217)
T ss_dssp SEEEE----S-HHHHHHHHHH-H--S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred CeEecCC-CCCHHHHHHHHHhccCCCceEEeecCCccCCHHHHHHHHhccC
Confidence 7777544 56777888888444456789999999 588888998887653
No 147
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=75.23 E-value=33 Score=29.44 Aligned_cols=95 Identities=22% Similarity=0.178 Sum_probs=56.6
Q ss_pred eeeeCCc-chHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019 28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~ 104 (362)
++|+-|. +.|...|+++...- ..+|+|+-+... +...+.+.+ .++.+. ....|.+.++..+......+
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~--d~~~~~~~~-----~~~~~~--~~~~g~~~a~n~g~~~a~~~ 74 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGST--DGTVAIARS-----AGVVVI--SSPKGRARQMNAGAAAARGD 74 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCC--ccHHHHHhc-----CCeEEE--eCCcCHHHHHHHHHHhccCC
Confidence 4677676 67888888887653 245666644321 233344432 233333 34467777777777777667
Q ss_pred cEEEEeCCcccCCC-hHHHHHHHHhcCC
Q 018019 105 DVLVVSGDLVSDVP-PGAVTAAHRRHDA 131 (362)
Q Consensus 105 ~~lv~~~D~i~~~~-l~~~l~~h~~~~a 131 (362)
.++++..|.....+ +..++......+.
T Consensus 75 ~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 102 (221)
T cd02522 75 WLLFLHADTRLPPDWDAAIIETLRADGA 102 (221)
T ss_pred EEEEEcCCCCCChhHHHHHHHHhhcCCc
Confidence 88999999655444 5665555544433
No 148
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=74.93 E-value=53 Score=29.10 Aligned_cols=98 Identities=19% Similarity=0.159 Sum_probs=60.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV 84 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~ 84 (362)
.+++|-|.-..| +...| | +--.++|...+..+... .++.|++... +++......|-.-...+.+...
T Consensus 91 illlCTG~F~~l----~~~~~--l--leP~ril~~lV~al~~~--~~vGVivP~~---eQ~~~~~~kW~~l~~~~~~a~a 157 (221)
T PF07302_consen 91 ILLLCTGEFPGL----TARNP--L--LEPDRILPPLVAALVGG--HQVGVIVPLP---EQIAQQAEKWQPLGNPVVVAAA 157 (221)
T ss_pred EEEeccCCCCCC----CCCcc--e--eehHHhHHHHHHHhcCC--CeEEEEecCH---HHHHHHHHHHHhcCCCeEEEEe
Confidence 456676644344 44333 2 23467888888888654 7899999854 3555445555321223444443
Q ss_pred CCCCCHHHHHHHHHHhcC--CCcEEEEeCCccc
Q 018019 85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDLVS 115 (362)
Q Consensus 85 ~~~~gt~~al~~~~~~i~--~~~~lv~~~D~i~ 115 (362)
+...|+.+.+..+...+. .-+++|+.|=-++
T Consensus 158 sPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt 190 (221)
T PF07302_consen 158 SPYEGDEEELAAAARELAEQGADLIVLDCMGYT 190 (221)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 334588888888877776 4679999987554
No 149
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=72.46 E-value=62 Score=34.83 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=66.1
Q ss_pred eeeeeCCcc--hHHHHHHHHHhCCC--C--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCC-CCCHHHHHHHHHH
Q 018019 27 ALLPVANRP--VLSYVLEQLELSNI--K--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAH 99 (362)
Q Consensus 27 ~llpv~g~p--lI~~~l~~l~~~gi--~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~-~~gt~~al~~~~~ 99 (362)
-++|.-|.+ ++..++..+.+..- + +|+|+-+.. .+...+.+++ .++.++..++ ..+-++++-.+++
T Consensus 264 ViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS--~D~t~~la~~-----~~v~yI~R~~n~~gKAGnLN~aL~ 336 (852)
T PRK11498 264 IFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGG--REEFRQFAQE-----VGVKYIARPTHEHAKAGNINNALK 336 (852)
T ss_pred EEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCC--ChHHHHHHHH-----CCcEEEEeCCCCcchHHHHHHHHH
Confidence 356888876 57777877755432 2 566665433 2455555543 3566665443 4567889988888
Q ss_pred hcCCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEEEe
Q 018019 100 HLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAMIC 138 (362)
Q Consensus 100 ~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l~~ 138 (362)
....+.++++.+|.+...+ +..++..+.+ +..+.++..
T Consensus 337 ~a~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQt 375 (852)
T PRK11498 337 YAKGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQT 375 (852)
T ss_pred hCCCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEEc
Confidence 8777889999999876555 5666665544 344555543
No 150
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=72.33 E-value=6.3 Score=42.53 Aligned_cols=106 Identities=18% Similarity=0.126 Sum_probs=58.3
Q ss_pred cEEEEeCCcccCCC--hHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCC-cEEEEeecC
Q 018019 105 DVLVVSGDLVSDVP--PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTK-QFLLHIATG 181 (362)
Q Consensus 105 ~~lv~~~D~i~~~~--l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~-~~l~~~~~~ 181 (362)
.++|+.||.+...+ +.. -.+++++++....+. . -.+++|+++.|.++ ..+.++-.+
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~---~------------~~~~HGVfv~~~~~~~~~~~~LqK 212 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDP---S------------LATNHGVFVSSRKSPERLDFMLQK 212 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccCh---h------------hccCceEEEeCCCChHHHHHHhcC
Confidence 69999999644332 211 234566555444321 1 14678999998773 122333333
Q ss_pred cccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc-------ccccchhhhhhHH
Q 018019 182 AELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-------KFQSLKQDVLPYL 241 (362)
Q Consensus 182 ~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~-------~~~s~~~d~ip~l 241 (362)
+..|+- .-+. .-...+.|+|+|+|+.+....++.... ..-++..||+..|
T Consensus 213 ps~eel-----~a~~-----~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aL 269 (974)
T PRK13412 213 PSLEEL-----GGLS-----KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLAL 269 (974)
T ss_pred CCHHHH-----Hhhh-----cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhc
Confidence 333321 1111 123468899999999998887764311 1334555666554
No 151
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=71.21 E-value=53 Score=30.87 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=58.1
Q ss_pred eeeeeCCc-chHHHHHHHH----HhCCC-CeEEEEccCcchHHHHHHHHHhhhcC-CcceEEEEcCCCCCHHHHHHHHHH
Q 018019 27 ALLPVANR-PVLSYVLEQL----ELSNI-KDLIVVVEGADAALRVGGWISAAYVD-RLHVEVATVPEDVGTAGALRAIAH 99 (362)
Q Consensus 27 ~llpv~g~-plI~~~l~~l----~~~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~-~~~i~i~~~~~~~gt~~al~~~~~ 99 (362)
-.+|.-|. .-|...++.+ ..... -+|+|+-+... |.-.+.+.+.... ...+..+......|.+.|+..+.+
T Consensus 10 VVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~--D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~ 87 (325)
T PRK10714 10 VVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSS--DNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFS 87 (325)
T ss_pred EEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCC--CcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 34566654 4455555444 33332 25666644221 1222222221100 122333333456788899998888
Q ss_pred hcCCCcEEEEeCCcccC-CChHHHHHHHHhcCCeEE
Q 018019 100 HLTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDAVVT 134 (362)
Q Consensus 100 ~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a~~t 134 (362)
....+.++++.+|...+ ..+..+++... .+.++.
T Consensus 88 ~A~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 88 HVTGDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred hCCCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 77667889999997554 56788888764 456643
No 152
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=70.87 E-value=56 Score=31.62 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=66.5
Q ss_pred eeeeeCCc-c-hHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCC-cceEEEEc-CCCCCHHHHHHHHHHh
Q 018019 27 ALLPVANR-P-VLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDR-LHVEVATV-PEDVGTAGALRAIAHH 100 (362)
Q Consensus 27 ~llpv~g~-p-lI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~-~~i~i~~~-~~~~gt~~al~~~~~~ 100 (362)
-++|.-|. + .+..+++++.+.... +|+|+..... |...+.+.+....- ..+.+... ....|-+.++..+...
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~ 135 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGST--DETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKR 135 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCC--hhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhh
Confidence 45677786 6 899999999988644 6777776332 34445554322110 12333322 3456778999999887
Q ss_pred cCCCcEEEEeCCcccCCC-hHHHHHHHHhcC
Q 018019 101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRHD 130 (362)
Q Consensus 101 i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~ 130 (362)
...+.++++.+|.+..-| +..++..+....
T Consensus 136 ~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~ 166 (439)
T COG1215 136 AKGDVVVILDADTVPEPDALRELVSPFEDPP 166 (439)
T ss_pred cCCCEEEEEcCCCCCChhHHHHHHhhhcCCC
Confidence 766778899999776655 677777765543
No 153
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=70.04 E-value=83 Score=30.10 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=58.9
Q ss_pred eeeeeCCc-chHHHHHHHHHhCCC--CeEEEEccCcch-HHHHHHHHHhhhcCCcceEEEEcCCCCC---HHHHHHHHHH
Q 018019 27 ALLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADA-ALRVGGWISAAYVDRLHVEVATVPEDVG---TAGALRAIAH 99 (362)
Q Consensus 27 ~llpv~g~-plI~~~l~~l~~~gi--~~v~vv~~~~~~-~~~i~~~~~~~~~~~~~i~i~~~~~~~g---t~~al~~~~~ 99 (362)
-++|+.|. +.|.-.|+++..... -+|+|+....+. ...+.+.+...+. ...+.++..+...| -..++.++.+
T Consensus 45 ViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p-~~~i~~v~~~~~~G~~~K~~~l~~~~~ 123 (373)
T TIGR03472 45 VLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFP-DADIDLVIDARRHGPNRKVSNLINMLP 123 (373)
T ss_pred EEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCC-CCceEEEECCCCCCCChHHHHHHHHHH
Confidence 36788886 889999999977653 367666543321 1122222222221 23455555444444 3355665656
Q ss_pred hcCCCcEEEEeCCcccCCC-hHHHHHHHH
Q 018019 100 HLTAKDVLVVSGDLVSDVP-PGAVTAAHR 127 (362)
Q Consensus 100 ~i~~~~~lv~~~D~i~~~~-l~~~l~~h~ 127 (362)
....+.++++.+|.+.+.+ ++.++....
T Consensus 124 ~a~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 124 HARHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred hccCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 5656778999999766655 666766654
No 154
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=69.59 E-value=1.1e+02 Score=29.69 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=74.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHh----CCCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 5 VVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 5 avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~----~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
.+=|-||.||-| +-..||.+++|. |...+|-++.+... .+++--.|+.++-...+.....++.+...+..+
T Consensus 106 vlKLNGGlGttm----Gc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~kv~i 181 (498)
T KOG2638|consen 106 VLKLNGGLGTTM----GCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSKVDI 181 (498)
T ss_pred EEEecCCcCCcc----ccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCceeE
Confidence 455889999999 888999999996 46888866666544 345544555553222345556666543322111
Q ss_pred EEE-----------------E--cC---C---CCCHH---HHHHHH--HHhc-C--CCcEEEEeCCccc-CCChHHHHHH
Q 018019 80 EVA-----------------T--VP---E---DVGTA---GALRAI--AHHL-T--AKDVLVVSGDLVS-DVPPGAVTAA 125 (362)
Q Consensus 80 ~i~-----------------~--~~---~---~~gt~---~al~~~--~~~i-~--~~~~lv~~~D~i~-~~~l~~~l~~ 125 (362)
.-. . .+ + +.|.| +++..- ++.+ . .++++|.+.|.+. ..||. +++.
T Consensus 182 ~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~-ILn~ 260 (498)
T KOG2638|consen 182 KTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN-ILNH 260 (498)
T ss_pred EEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH-HHHH
Confidence 111 1 01 1 23444 444432 3332 2 4778999999655 45765 5666
Q ss_pred HHhcCCeEEEEEe
Q 018019 126 HRRHDAVVTAMIC 138 (362)
Q Consensus 126 h~~~~a~~t~l~~ 138 (362)
..+.+....|=++
T Consensus 261 ~i~~~~ey~MEvT 273 (498)
T KOG2638|consen 261 VINNNIEYLMEVT 273 (498)
T ss_pred HhcCCCceEEEec
Confidence 6666666555443
No 155
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=66.47 E-value=1e+02 Score=28.05 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCcccCCC-hHHHHH
Q 018019 88 VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTA 124 (362)
Q Consensus 88 ~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~ 124 (362)
.|.+.+.-.+......+.++++.+|++...+ +..+++
T Consensus 74 f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 74 FSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 5888887777777777778999999877654 566666
No 156
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=66.28 E-value=81 Score=29.36 Aligned_cols=106 Identities=20% Similarity=0.221 Sum_probs=60.8
Q ss_pred eeeeCCc-chHHHHHHHHHhC----CCCeEEEEccCcchHHHHHHHHHhhhcCCc--ceEEEE-cCCCCCHHHHHHHHHH
Q 018019 28 LLPVANR-PVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVDRL--HVEVAT-VPEDVGTAGALRAIAH 99 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~--~i~i~~-~~~~~gt~~al~~~~~ 99 (362)
.+|.-|. ..|..+|+.+.+. ...+|+|+-+... +...+.+.+.. .+. ...++. .+...|-+.++..+..
T Consensus 36 VIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgSt--D~T~~ia~~~~-~~v~~~~~~~~~~~~n~Gkg~A~~~g~~ 112 (306)
T PRK13915 36 VLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGST--DATAERAAAAG-ARVVSREEILPELPPRPGKGEALWRSLA 112 (306)
T ss_pred EEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCc--cHHHHHHHHhc-chhhcchhhhhccccCCCHHHHHHHHHH
Confidence 3566665 6788888888652 2457777654321 23333333321 010 001111 1345788889888877
Q ss_pred hcCCCcEEEEeCCcc-c-CCChHHHHHHHH-hcCCeEEEE
Q 018019 100 HLTAKDVLVVSGDLV-S-DVPPGAVTAAHR-RHDAVVTAM 136 (362)
Q Consensus 100 ~i~~~~~lv~~~D~i-~-~~~l~~~l~~h~-~~~a~~t~l 136 (362)
....+.++++.+|.. . +..+..+++... ..+.++...
T Consensus 113 ~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 113 ATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred hcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 666677899999975 3 445788888765 344555443
No 157
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=64.61 E-value=92 Score=26.76 Aligned_cols=101 Identities=19% Similarity=0.129 Sum_probs=58.1
Q ss_pred eeeeCCc-chHHHHHHHHHhCCC---CeEEEEccCcchHHHHHHHHHhhh--cCCcceEEEEc----CCCCCHHHHHHHH
Q 018019 28 LLPVANR-PVLSYVLEQLELSNI---KDLIVVVEGADAALRVGGWISAAY--VDRLHVEVATV----PEDVGTAGALRAI 97 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~gi---~~v~vv~~~~~~~~~i~~~~~~~~--~~~~~i~i~~~----~~~~gt~~al~~~ 97 (362)
++|.-|. ..|..+|+.+..... -+|+|+-.... +...+.+.++. ....++.++.. +...|.+.+.-.+
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~--d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g 79 (219)
T cd06913 2 ILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDAST--DKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQA 79 (219)
T ss_pred EEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--ccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHH
Confidence 3566655 788889999976533 26666654321 11222222211 01123444432 2236777777777
Q ss_pred HHhcCCCcEEEEeCCcc-cCCChHHHHHHHHhcC
Q 018019 98 AHHLTAKDVLVVSGDLV-SDVPPGAVTAAHRRHD 130 (362)
Q Consensus 98 ~~~i~~~~~lv~~~D~i-~~~~l~~~l~~h~~~~ 130 (362)
.+....+.++++.+|.+ .+..+..++....+..
T Consensus 80 ~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 80 IAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred HHhcCCCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 77666678899999954 4555777777665544
No 158
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=64.47 E-value=32 Score=29.74 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=53.7
Q ss_pred eeeeeCCc-chHHHHHHHHHhCC--CCeEEEEccCcch--HHHHHHHHHhhhcCCcceEEEEcCCCCC---HHHHHHHHH
Q 018019 27 ALLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATVPEDVG---TAGALRAIA 98 (362)
Q Consensus 27 ~llpv~g~-plI~~~l~~l~~~g--i~~v~vv~~~~~~--~~~i~~~~~~~~~~~~~i~i~~~~~~~g---t~~al~~~~ 98 (362)
.++|..|+ +.|..+|+.+.... --+|+|+.+.... .+.+.+....+ . ..++.++..+...| .+.++..+.
T Consensus 5 Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~-~-~~~v~vi~~~~~~g~~~k~~a~n~~~ 82 (228)
T PF13641_consen 5 VVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY-P-RVRVRVIRRPRNPGPGGKARALNEAL 82 (228)
T ss_dssp EE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT-G-G-GEEEEE----HHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc-C-CCceEEeecCCCCCcchHHHHHHHHH
Confidence 45778777 89999999997642 2356666643221 11233333222 1 23466665544334 457788887
Q ss_pred HhcCCCcEEEEeCCcccCCC-hHHHHHHHHhcC
Q 018019 99 HHLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHD 130 (362)
Q Consensus 99 ~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~ 130 (362)
+....+.++++..|.+.+.+ +..+++.+...+
T Consensus 83 ~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~ 115 (228)
T PF13641_consen 83 AAARGDYILFLDDDTVLDPDWLERLLAAFADPG 115 (228)
T ss_dssp HH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS
T ss_pred HhcCCCEEEEECCCcEECHHHHHHHHHHHHhCC
Confidence 77767788999999766544 777777773333
No 159
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=62.93 E-value=93 Score=26.25 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=54.9
Q ss_pred eeeeCCc-chHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcC---CCCCHHHHHHHHHHhcC
Q 018019 28 LLPVANR-PVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP---EDVGTAGALRAIAHHLT 102 (362)
Q Consensus 28 llpv~g~-plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~---~~~gt~~al~~~~~~i~ 102 (362)
++|.-|. ..|..+|+++.+.. -.+|+|+-.... +...+.+. ......++.++... ...|-+.++..++..+.
T Consensus 2 iIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~--D~t~~~~~-~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~ 78 (191)
T cd06436 2 LVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASD--DDTAGIVR-LAITDSRVHLLRRHLPNARTGKGDALNAAYDQIR 78 (191)
T ss_pred EEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCC--cCHHHHHh-heecCCcEEEEeccCCcCCCCHHHHHHHHHHHHh
Confidence 4566665 78889999997754 235666654332 23333343 11111245555432 24688888888876653
Q ss_pred -----------CCcEEEEeCCcccCCC-hHHHHHHH
Q 018019 103 -----------AKDVLVVSGDLVSDVP-PGAVTAAH 126 (362)
Q Consensus 103 -----------~~~~lv~~~D~i~~~~-l~~~l~~h 126 (362)
.+.++++.+|...+.+ +..+....
T Consensus 79 ~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 79 QILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred hhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 1457899999765544 56654443
No 160
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=62.31 E-value=96 Score=26.19 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=53.5
Q ss_pred eeeeeCCc-chHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhc--CCcceEEEEcCCCCCH---HHHHHHHH
Q 018019 27 ALLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYV--DRLHVEVATVPEDVGT---AGALRAIA 98 (362)
Q Consensus 27 ~llpv~g~-plI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~--~~~~i~i~~~~~~~gt---~~al~~~~ 98 (362)
-++|+-|. +-|...|+++.+.. --+|+||..... +...+.+.++.. .+..+.++..+...|. +.++..+.
T Consensus 5 viip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~ 82 (196)
T cd02520 5 ILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDED--DPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGY 82 (196)
T ss_pred EEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCc--chHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHH
Confidence 35677665 67888888887643 236666655332 122222222110 1233445544433342 34555566
Q ss_pred HhcCCCcEEEEeCCcccCC-ChHHHHHHH
Q 018019 99 HHLTAKDVLVVSGDLVSDV-PPGAVTAAH 126 (362)
Q Consensus 99 ~~i~~~~~lv~~~D~i~~~-~l~~~l~~h 126 (362)
+....+.++++.+|.+.+. -+..+++..
T Consensus 83 ~~a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 83 EEARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HhCCCCEEEEECCCceEChhHHHHHHHHh
Confidence 6665677888999965544 466666654
No 161
>PRK10063 putative glycosyl transferase; Provisional
Probab=61.31 E-value=1.2e+02 Score=27.07 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=53.7
Q ss_pred eeeCC-cchHHHHHHHHHh----CCC-CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcC
Q 018019 29 LPVAN-RPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT 102 (362)
Q Consensus 29 lpv~g-~plI~~~l~~l~~----~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~ 102 (362)
+|.-| ...|..+|+.+.. .+. -+|+|+=+.. .+...+.++++. +...+.++..+ ..|.++|+..+++...
T Consensus 7 i~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS--tD~t~~i~~~~~-~~~~i~~i~~~-~~G~~~A~N~Gi~~a~ 82 (248)
T PRK10063 7 TVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGS--NDGTREFLENLN-GIFNLRFVSEP-DNGIYDAMNKGIAMAQ 82 (248)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcC--cccHHHHHHHhc-ccCCEEEEECC-CCCHHHHHHHHHHHcC
Confidence 34444 3678888888853 122 2555553322 123344454432 11245566543 4699999998888776
Q ss_pred CCcEEEEeCCcccCCChHHHHHHHH
Q 018019 103 AKDVLVVSGDLVSDVPPGAVTAAHR 127 (362)
Q Consensus 103 ~~~~lv~~~D~i~~~~l~~~l~~h~ 127 (362)
.+.++++++|-+...+..+++....
T Consensus 83 g~~v~~ld~DD~~~~~~~~~~~~~~ 107 (248)
T PRK10063 83 GRFALFLNSGDIFHQDAANFVRQLK 107 (248)
T ss_pred CCEEEEEeCCcccCcCHHHHHHHHH
Confidence 6788899977444334434444443
No 162
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=61.05 E-value=1.6e+02 Score=31.13 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=62.8
Q ss_pred eeeeCCcc--hHHHHHHHHHhCCC----CeEEEEccCc-c---------------hHHHHHHHHHhhhcCCcceEEEEcC
Q 018019 28 LLPVANRP--VLSYVLEQLELSNI----KDLIVVVEGA-D---------------AALRVGGWISAAYVDRLHVEVATVP 85 (362)
Q Consensus 28 llpv~g~p--lI~~~l~~l~~~gi----~~v~vv~~~~-~---------------~~~~i~~~~~~~~~~~~~i~i~~~~ 85 (362)
++|.-|.+ ++..+++.+....- -+|+|+-... + ..+.+.+..+ +.++.++..+
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~-----~~~v~yi~r~ 210 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR-----KLGVNYITRP 210 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH-----HcCcEEEECC
Confidence 57888875 56778888866532 2566664431 1 0112222222 2466666544
Q ss_pred CC-CCHHHHHHHHHHhcCCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 018019 86 ED-VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (362)
Q Consensus 86 ~~-~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l 136 (362)
+. .+-++++..+++....+.++++.+|.+...+ +..++..+.+ +..+.++
T Consensus 211 ~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 211 RNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred CCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 33 4557888888888777889999999776655 5677766543 3444444
No 163
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=60.53 E-value=2.1 Score=25.61 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=8.3
Q ss_pred CCCccCCCceecccccc
Q 018019 344 QNNIIHPSAELGSKTTQ 360 (362)
Q Consensus 344 ~~~~i~~~~~i~~k~~i 360 (362)
.++.|+++|.|+++|+|
T Consensus 18 ~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 18 GGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp TTEEE-TTEEEETTEEE
T ss_pred CCCEECCCCEEcCCCEE
Confidence 44455555555555554
No 164
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=58.49 E-value=81 Score=29.15 Aligned_cols=105 Identities=20% Similarity=0.157 Sum_probs=62.9
Q ss_pred eeeeCCcchHHHHHHHHHhCCCCe-EEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC--C
Q 018019 28 LLPVANRPVLSYVLEQLELSNIKD-LIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA--K 104 (362)
Q Consensus 28 llpv~g~plI~~~l~~l~~~gi~~-v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~--~ 104 (362)
.+-.+...-+...|..+.+..... .++++.... .+...+.++... ...+.++...+..|-+++.-.+...... .
T Consensus 9 iv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s-~d~~~~~~~~~~--~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~ 85 (305)
T COG1216 9 IVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGS-TDGSLEALKARF--FPNVRLIENGENLGFAGGFNRGIKYALAKGD 85 (305)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCC-CCCCHHHHHhhc--CCcEEEEEcCCCccchhhhhHHHHHHhcCCC
Confidence 334455678888899888876433 333333221 123334444321 1356677666778877776655444322 2
Q ss_pred -cEEEEeCCcccC-CChHHHHHHHHhcCCeEEE
Q 018019 105 -DVLVVSGDLVSD-VPPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 105 -~~lv~~~D~i~~-~~l~~~l~~h~~~~a~~t~ 135 (362)
.+++++-|.+.+ ..+.++++.+.+.+..+.+
T Consensus 86 ~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 86 DYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred cEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 699999996554 4588899988776554433
No 165
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=57.48 E-value=62 Score=23.24 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=37.0
Q ss_pred eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC
Q 018019 51 DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD 112 (362)
Q Consensus 51 ~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D 112 (362)
++.++++.....+.+...++ ++++..+.-...+|-+.+|++.++.+++...+.+..|
T Consensus 11 ~~~~lvS~s~DGe~ia~~~~-----~~G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpD 67 (74)
T PF04028_consen 11 KIAALVSRSRDGELIARVLE-----RFGFRTIRGSSSRGGARALREMLRALKEGYSIAITPD 67 (74)
T ss_pred CEEEEEccCcCHHHHHHHHH-----HcCCCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCC
Confidence 44555543322344443333 3567777667778999999999998887677777666
No 166
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=53.68 E-value=36 Score=32.40 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHh
Q 018019 15 KLVPLVSKEVPKALLPVANR-PVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISA 71 (362)
Q Consensus 15 rl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~ 71 (362)
.|.|| ....+.-++.|-+| .-+.+.|+.|.++ ||+++.++.++....+++.+.+.+
T Consensus 24 ~f~~l-~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 24 KFGPL-ANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred hcCCC-CCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHh
Confidence 56667 67778889999999 5889999999776 899999999877666788887775
No 167
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=52.40 E-value=67 Score=27.81 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=66.9
Q ss_pred ceEEEEe---CCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019 3 FQVVVLA---GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV 79 (362)
Q Consensus 3 ~~avIlA---~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i 79 (362)
|.+||+- ++.-|||.|......-+.++ .-|+-.++..+... +.+|.|++... .+..... +.
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpde----~~~~~a~-------~~ 64 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPDE----EVLVPAT-------KL 64 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCCh----Hhhhhcc-------cc
Confidence 4567764 35667887752211111111 35888899888765 78899998843 3322211 12
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCC-CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019 80 EVATVPEDVGTAGALRAIAHHLTA-KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 80 ~i~~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~ 135 (362)
++... .+--.++.++++.+.. +.++|+.+| ++.+.+++.+++..+. +++.+
T Consensus 65 ~vl~d---~dLN~Ai~aa~~~~~~p~~v~vvmaDLPLl~~~~i~~~~~~~~d--~dvvi 118 (210)
T COG1920 65 EVLAD---PDLNTAINAALDEIPLPSEVIVVMADLPLLSPEHIERALSAAKD--ADVVI 118 (210)
T ss_pred eeeec---cchHHHHHHHHhhCCCCcceEEEecccccCCHHHHHHHHHhcCC--CcEEE
Confidence 33332 2244667777777753 569999999 5778889888876533 44433
No 168
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=52.24 E-value=31 Score=27.30 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.3
Q ss_pred CcchHHHHHHHHHhCCCCeEEEE
Q 018019 33 NRPVLSYVLEQLELSNIKDLIVV 55 (362)
Q Consensus 33 g~plI~~~l~~l~~~gi~~v~vv 55 (362)
+.|-|+-.++.|...|+++|+|+
T Consensus 44 ~~P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NEPTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 57999999999999999988886
No 169
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=49.87 E-value=1e+02 Score=22.68 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCC--CC-HHHHHHHH-HHhc-CCCcEEEE
Q 018019 35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPED--VG-TAGALRAI-AHHL-TAKDVLVV 109 (362)
Q Consensus 35 plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~--~g-t~~al~~~-~~~i-~~~~~lv~ 109 (362)
++|...|......|+++++|+.+... +...+.+.+. . ++.++....+ .+ .....+.. .... ..+.++.+
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~--D~t~~~l~~~--~--~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~ 78 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGST--DGTREILRAL--P--GVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFL 78 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCC--ccHHHHHHhC--C--CcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEE
Confidence 67888888888899999999877543 3445556543 1 2444433222 11 22223322 2222 34668889
Q ss_pred eCC
Q 018019 110 SGD 112 (362)
Q Consensus 110 ~~D 112 (362)
.+|
T Consensus 79 D~D 81 (97)
T PF13704_consen 79 DAD 81 (97)
T ss_pred eee
Confidence 999
No 170
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=48.31 E-value=1.1e+02 Score=25.83 Aligned_cols=98 Identities=23% Similarity=0.297 Sum_probs=51.3
Q ss_pred eeeeeCC---cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcC-
Q 018019 27 ALLPVAN---RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT- 102 (362)
Q Consensus 27 ~llpv~g---~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~- 102 (362)
-|+|..+ -|=+.-.+..+..+|++ ++|+.+..+ ..+..+.. ++++.++.- ..+-.+-+++.|++...
T Consensus 38 TLv~wd~~~~tpe~~~W~~e~k~~gi~-v~vvSNn~e--~RV~~~~~-----~l~v~fi~~-A~KP~~~~fr~Al~~m~l 108 (175)
T COG2179 38 TLVPWDNPDATPELRAWLAELKEAGIK-VVVVSNNKE--SRVARAAE-----KLGVPFIYR-AKKPFGRAFRRALKEMNL 108 (175)
T ss_pred ceecccCCCCCHHHHHHHHHHHhcCCE-EEEEeCCCH--HHHHhhhh-----hcCCceeec-ccCccHHHHHHHHHHcCC
Confidence 3455544 35555556666777774 555544321 23433332 456777653 23455678888877664
Q ss_pred CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEee
Q 018019 103 AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICS 139 (362)
Q Consensus 103 ~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~ 139 (362)
...=+++-||-+ +.+++..++. ..-|+++.+
T Consensus 109 ~~~~vvmVGDqL----~TDVlggnr~--G~~tIlV~P 139 (175)
T COG2179 109 PPEEVVMVGDQL----FTDVLGGNRA--GMRTILVEP 139 (175)
T ss_pred ChhHEEEEcchh----hhhhhccccc--CcEEEEEEE
Confidence 223466678854 3345544432 123455443
No 171
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=47.37 E-value=2.1e+02 Score=25.70 Aligned_cols=109 Identities=11% Similarity=0.117 Sum_probs=57.3
Q ss_pred eeeeeCCcc--hHHHHHHHHHh----CC---CCeEEEEccCcchHHHHHH--H---HHhhhcCCcceEEEEcCCCCCH-H
Q 018019 27 ALLPVANRP--VLSYVLEQLEL----SN---IKDLIVVVEGADAALRVGG--W---ISAAYVDRLHVEVATVPEDVGT-A 91 (362)
Q Consensus 27 ~llpv~g~p--lI~~~l~~l~~----~g---i~~v~vv~~~~~~~~~i~~--~---~~~~~~~~~~i~i~~~~~~~gt-~ 91 (362)
-++|+.|.+ ++.-.|.++.+ .+ --+|+|+-...+.+..+.+ . +.+.+....++.+..-.+..|- +
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Ka 82 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKA 82 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccH
Confidence 368999974 36666666543 22 2366555333321111111 1 2222333344555544444443 4
Q ss_pred HHHHHHHHhc--CCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 018019 92 GALRAIAHHL--TAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (362)
Q Consensus 92 ~al~~~~~~i--~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l 136 (362)
+.|..++... ..+.++++.+|.+..-+ +..++..+.. +..+.++
T Consensus 83 g~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~-~~~vg~v 129 (254)
T cd04191 83 GNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEA-NPRAGII 129 (254)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHh-CCCEEEE
Confidence 6666666543 23679999999766544 7777776643 3444444
No 172
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=46.71 E-value=10 Score=27.24 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=3.8
Q ss_pred ccCCCceecc
Q 018019 347 IIHPSAELGS 356 (362)
Q Consensus 347 ~i~~~~~i~~ 356 (362)
+|+++|+||+
T Consensus 19 ~Ig~~~~Ig~ 28 (80)
T cd05824 19 VIGPNVTIGD 28 (80)
T ss_pred EECCCCEECC
Confidence 3333333333
No 173
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=44.07 E-value=11 Score=22.49 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=10.0
Q ss_pred CccCCCceecccccccC
Q 018019 346 NIIHPSAELGSKTTQLA 362 (362)
Q Consensus 346 ~~i~~~~~i~~k~~i~~ 362 (362)
..|+.+|.|+++++|+|
T Consensus 18 i~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 18 ITIGDGVIIGAGVVITA 34 (34)
T ss_dssp SEE-TTEEE-TTEEEES
T ss_pred CEEcCCCEECCCCEEcC
Confidence 44677777777777765
No 174
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=43.69 E-value=16 Score=26.23 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=8.6
Q ss_pred CCCccCCCceeccccccc
Q 018019 344 QNNIIHPSAELGSKTTQL 361 (362)
Q Consensus 344 ~~~~i~~~~~i~~k~~i~ 361 (362)
.+++|++++.|+++++|+
T Consensus 10 ~~~~i~~~~~Ig~~~~Ig 27 (80)
T cd05824 10 KTAKIGPNVVIGPNVTIG 27 (80)
T ss_pred CCCEECCCCEECCCCEEC
Confidence 344444555555555443
No 175
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=42.27 E-value=1.1e+02 Score=24.25 Aligned_cols=83 Identities=8% Similarity=0.027 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhc--CCCcEEEEeCCc--cc
Q 018019 40 VLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL--TAKDVLVVSGDL--VS 115 (362)
Q Consensus 40 ~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i--~~~~~lv~~~D~--i~ 115 (362)
+|+.+.+...-+++|........... ..+ +. ..++.+..| ...+-++.+..+.+.. ..+.++++.+|. +.
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~-~~~--~~--~~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~ 74 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAF-RQL--WL--PSGFSFFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLT 74 (122)
T ss_dssp -------TSSSEEEEEE----TTHHH-HHH--HH---TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--
T ss_pred CccccccCCCcCEEEEEcCCccHHHH-hcc--cc--CCCCEEeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCC
Confidence 35667666666777776643221122 211 11 124566665 3355566777665544 245799999994 66
Q ss_pred CCChHHHHHHHHh
Q 018019 116 DVPPGAVTAAHRR 128 (362)
Q Consensus 116 ~~~l~~~l~~h~~ 128 (362)
...+....+....
T Consensus 75 ~~~l~~A~~~L~~ 87 (122)
T PF09837_consen 75 PDDLEQAFEALQR 87 (122)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcc
Confidence 6667666655433
No 176
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=41.94 E-value=39 Score=25.16 Aligned_cols=31 Identities=32% Similarity=0.626 Sum_probs=25.7
Q ss_pred eeeCCcchHHHHHHHHHh--CCCCeEEEEccCc
Q 018019 29 LPVANRPVLSYVLEQLEL--SNIKDLIVVVEGA 59 (362)
Q Consensus 29 lpv~g~plI~~~l~~l~~--~gi~~v~vv~~~~ 59 (362)
+-+|.||+..|++.-+.. .|.++|.+-....
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKarG~ 36 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKARGR 36 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEecc
Confidence 457889999999999974 5899999987754
No 177
>PRK10481 hypothetical protein; Provisional
Probab=41.38 E-value=2.6e+02 Score=24.88 Aligned_cols=86 Identities=13% Similarity=-0.002 Sum_probs=52.2
Q ss_pred chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcC--CCcEEEEeCC
Q 018019 35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT--AKDVLVVSGD 112 (362)
Q Consensus 35 plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D 112 (362)
.+|...+..+.. -.++.|++.+. +++..+.+.|......+.+.......++.+.++.+.+.+. .-+++++.|=
T Consensus 117 ~~i~~lv~Al~~--g~riGVitP~~---~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~ 191 (224)
T PRK10481 117 RILPPLVAAIVG--GHQVGVIVPVE---EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCL 191 (224)
T ss_pred hhHHHHHHHhcC--CCeEEEEEeCH---HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCC
Confidence 455666666643 38999999865 3666666666433233333333323466667777766554 3569999998
Q ss_pred cccCCChHHHHHHH
Q 018019 113 LVSDVPPGAVTAAH 126 (362)
Q Consensus 113 ~i~~~~l~~~l~~h 126 (362)
-++. ...+.++..
T Consensus 192 G~~~-~~~~~le~~ 204 (224)
T PRK10481 192 GYHQ-RHRDLLQKA 204 (224)
T ss_pred CcCH-HHHHHHHHH
Confidence 6665 455555543
No 178
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.18 E-value=1.2e+02 Score=26.62 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=41.7
Q ss_pred CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC
Q 018019 48 NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD 112 (362)
Q Consensus 48 gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D 112 (362)
+.+++++.++.+...+.+...++ ++|+..+.-+..+|-..|++.....+.+..=+++..|
T Consensus 66 ~~~~~~amvS~s~DGEliA~~l~-----kfG~~~IRGSs~Kgg~~Alr~l~k~Lk~G~~i~itpD 125 (214)
T COG2121 66 KGKKIYAMVSPSRDGELIARLLE-----KFGLRVIRGSSNKGGISALRALLKALKQGKSIAITPD 125 (214)
T ss_pred CCCcEEEEEcCCcCHHHHHHHHH-----HcCceEEeccCCcchHHHHHHHHHHHhCCCcEEEcCC
Confidence 34556666664433444444444 4688888777789999999999999987776777777
No 179
>PF13562 NTP_transf_4: Sugar nucleotidyl transferase
Probab=39.87 E-value=1.1e+02 Score=25.44 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=35.6
Q ss_pred EEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEcc
Q 018019 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVE 57 (362)
Q Consensus 6 vIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~ 57 (362)
|+.=+..-.+|.|| |..||..=+.+|...+-+.....+. ...+..++.
T Consensus 3 ilFdd~~~~~L~Pl-t~tRPV~dlr~Gi~TlrEkwe~~l~---~~~~s~~tr 50 (156)
T PF13562_consen 3 ILFDDEARNNLLPL-TFTRPVADLRCGILTLREKWEKYLG---AATVSFHTR 50 (156)
T ss_pred EEEcCCChhcccCc-ccccCHHHHhhhHHHHHHHHHHHcC---CCceEEEhh
Confidence 44444456789999 9999999999998899888877774 334555554
No 180
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=37.12 E-value=20 Score=33.71 Aligned_cols=10 Identities=10% Similarity=-0.130 Sum_probs=5.5
Q ss_pred ceEEeeCHHH
Q 018019 210 AHMYAFNRSV 219 (362)
Q Consensus 210 ~giYi~s~~v 219 (362)
++.-+++++.
T Consensus 56 Agaviv~~~~ 65 (338)
T COG1044 56 AGAVIVSAKD 65 (338)
T ss_pred ccEEEecHHH
Confidence 4555555554
No 181
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=35.01 E-value=19 Score=36.65 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=15.8
Q ss_pred CCCCCccCCCceeccccccc
Q 018019 342 SAQNNIIHPSAELGSKTTQL 361 (362)
Q Consensus 342 ~~~~~~i~~~~~i~~k~~i~ 361 (362)
.-.||+||++|+||.|++|.
T Consensus 347 ~I~NSVIG~~c~IgsN~~I~ 366 (673)
T KOG1461|consen 347 KISNSVIGANCRIGSNVRIK 366 (673)
T ss_pred eeecceecCCCEecCceEEe
Confidence 33788888888888888874
No 182
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=32.71 E-value=1.4e+02 Score=26.25 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=29.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc-ccCCC-hHHHHHHHHh
Q 018019 79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVP-PGAVTAAHRR 128 (362)
Q Consensus 79 i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~-l~~~l~~h~~ 128 (362)
+.+....+..+.+.++-.+++....++++.+.-|+ +.+.+ +.++++.+.+
T Consensus 31 i~i~~~~~~~s~~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~ 82 (217)
T PF13712_consen 31 IEIDNVRNAKSMAAAYNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEE 82 (217)
T ss_dssp EEEE-SSS-S-TTTHHHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH
T ss_pred EEEeccCCCcCHHHHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhh
Confidence 44444444567777888887776667788888996 44555 5667776644
No 183
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=32.08 E-value=29 Score=32.67 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=9.1
Q ss_pred CCCCCccCCCceeccccccc
Q 018019 342 SAQNNIIHPSAELGSKTTQL 361 (362)
Q Consensus 342 ~~~~~~i~~~~~i~~k~~i~ 361 (362)
.+.|.+|+|+|+||++++||
T Consensus 132 IG~~~~I~~~~vIg~~~~IG 151 (338)
T COG1044 132 IGENVVIGAGAVIGENVKIG 151 (338)
T ss_pred ECCCcEECCCCEECCCcEEC
Confidence 33444444444444444444
No 184
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=32.05 E-value=3.7e+02 Score=26.04 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=47.9
Q ss_pred eeeeeeCCcc---hHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCC--cceEEEEcCCCC--CHHHHHHHH
Q 018019 26 KALLPVANRP---VLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDR--LHVEVATVPEDV--GTAGALRAI 97 (362)
Q Consensus 26 K~llpv~g~p---lI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~--~~i~i~~~~~~~--gt~~al~~~ 97 (362)
|-+.=+|-|| -+.=++..+.+.+ ++.++++++.++..+-...++...-... ..+.+....... -|+..+...
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~ 84 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGL 84 (383)
T ss_pred EEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHH
Confidence 4455555565 2334566676666 9999999986542222333333211110 112222111111 123333322
Q ss_pred HHhcC--CCcEEEEeCCcccCCChHHHHHHHHh
Q 018019 98 AHHLT--AKDVLVVSGDLVSDVPPGAVTAAHRR 128 (362)
Q Consensus 98 ~~~i~--~~~~lv~~~D~i~~~~l~~~l~~h~~ 128 (362)
.+.+. +.|.+++.||.-+. |...+..+..
T Consensus 85 ~~vl~~~kPD~VlVhGDT~t~--lA~alaa~~~ 115 (383)
T COG0381 85 SKVLEEEKPDLVLVHGDTNTT--LAGALAAFYL 115 (383)
T ss_pred HHHHHhhCCCEEEEeCCcchH--HHHHHHHHHh
Confidence 22222 46799999997654 4433344433
No 185
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=31.57 E-value=1.4e+02 Score=22.25 Aligned_cols=34 Identities=26% Similarity=0.559 Sum_probs=27.9
Q ss_pred eeeeeeCCcchHHHHHHHHHh--CCCCeEEEEccCc
Q 018019 26 KALLPVANRPVLSYVLEQLEL--SNIKDLIVVVEGA 59 (362)
Q Consensus 26 K~llpv~g~plI~~~l~~l~~--~gi~~v~vv~~~~ 59 (362)
+..+-+|.||...|+|.-+.. .|.++|++-....
T Consensus 4 envV~vG~KPvmNYVlAvlt~fn~g~~eViiKARGr 39 (91)
T COG1581 4 ENVVLVGKKPVMNYVLAVLTQFNEGADEVIIKARGR 39 (91)
T ss_pred ccEEEEcCcchHHHHHHHHHHHHcCCCEEEEEecch
Confidence 466778899999999998854 6899999988754
No 186
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=30.20 E-value=98 Score=29.34 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=34.8
Q ss_pred CceEEEEeCCCCCCCCCCCC----------CCCC-----eeeeeeCCcchHHHHHHHHHhCCCCeEEEEc
Q 018019 2 DFQVVVLAGGTSKKLVPLVS----------KEVP-----KALLPVANRPVLSYVLEQLELSNIKDLIVVV 56 (362)
Q Consensus 2 ~~~avIlA~G~gtrl~pl~t----------~~~p-----K~llpv~g~plI~~~l~~l~~~gi~~v~vv~ 56 (362)
.|.+||+.| .|||...- . ..++ -+++.+ ..|-|.-.++.|...|.++|+|+-
T Consensus 5 ~~~aiLLvg-HGSRdp~~-~~~~~~La~~l~~~~~~~V~~aFLE~-~ePsl~eal~~l~~~G~~~IvVvP 71 (335)
T PRK05782 5 SNTAIILIG-HGSRRETF-NSDMEGMANYLKEKLGVPIYLTYNEF-AEPNWRSLLNEIIKEGYRRVIIAL 71 (335)
T ss_pred CCceEEEEe-cCCCChHH-HHHHHHHHHHHHhccCCceEEEEecc-CCCCHHHHHHHHHHCCCCEEEEec
Confidence 467888886 78875211 0 0111 133444 359999999999999999987764
No 187
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=29.81 E-value=31 Score=29.55 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=14.6
Q ss_pred CCCCCCCCccCCCceecccccccC
Q 018019 339 YNFSAQNNIIHPSAELGSKTTQLA 362 (362)
Q Consensus 339 ~~~~~~~~~i~~~~~i~~k~~i~~ 362 (362)
..+.+.+++|.++++||++++|+|
T Consensus 135 ~v~IG~~a~I~~gv~IG~~~vIga 158 (183)
T PRK10092 135 NVWIGGRAVINPGVTIGDNVVVAS 158 (183)
T ss_pred CcEECCCCEECCCCEECCCCEECC
Confidence 344445566666666666666654
No 188
>PRK10502 putative acyl transferase; Provisional
Probab=29.06 E-value=32 Score=29.37 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=19.1
Q ss_pred ccCCCCCCCCCCccCCCceecccccccC
Q 018019 335 HLSGYNFSAQNNIIHPSAELGSKTTQLA 362 (362)
Q Consensus 335 ~~~~~~~~~~~~~i~~~~~i~~k~~i~~ 362 (362)
.+....+...+++|.++++||+.+.|+|
T Consensus 126 ~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga 153 (182)
T PRK10502 126 VIGEGCWLAADVFVAPGVTIGSGAVVGA 153 (182)
T ss_pred EEcCCcEEcCCCEEcCCCEECCCCEECC
Confidence 3444555666777778888888877765
No 189
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=28.16 E-value=4.2e+02 Score=23.73 Aligned_cols=86 Identities=8% Similarity=0.049 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcC-----C--C--CCHHHHHHHHHHhcC--CC
Q 018019 36 VLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP-----E--D--VGTAGALRAIAHHLT--AK 104 (362)
Q Consensus 36 lI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~-----~--~--~gt~~al~~~~~~i~--~~ 104 (362)
-..=+++.|...|+++|.|++.|.+ .+.+.+..++. ..|++++... + . .=+.+.++.+...+. +-
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~---~v~~~~~~~l~-~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~a 182 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTP---ETSRPMAQYFA-VRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDA 182 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcH---HHHHHHHHHHH-hCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCC
Confidence 3455677778889999999999753 45555544432 2455554321 1 1 112355555544332 34
Q ss_pred cEEEEeCCcccCCChHHHHHH
Q 018019 105 DVLVVSGDLVSDVPPGAVTAA 125 (362)
Q Consensus 105 ~~lv~~~D~i~~~~l~~~l~~ 125 (362)
+-+++.|-.+...++-+-++.
T Consensus 183 DAifisCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 183 DALFLSCTALRAATCAQRIEQ 203 (239)
T ss_pred CEEEEeCCCchhHHHHHHHHH
Confidence 577777776665555444443
No 190
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=27.11 E-value=30 Score=29.33 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=19.9
Q ss_pred ccCCCCCCCCCCccCCCceecccccccC
Q 018019 335 HLSGYNFSAQNNIIHPSAELGSKTTQLA 362 (362)
Q Consensus 335 ~~~~~~~~~~~~~i~~~~~i~~k~~i~~ 362 (362)
.+....+.+.+++|-|+++||+++.|||
T Consensus 126 ~IG~~vwIG~~a~IlpGV~IG~gaviga 153 (190)
T COG0110 126 TIGEDVWIGAGAVILPGVTIGEGAVIGA 153 (190)
T ss_pred EECCCeEEcCccEECCCEEECCCcEEee
Confidence 3444556667777888888888888776
No 191
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=26.92 E-value=3.3e+02 Score=21.80 Aligned_cols=94 Identities=18% Similarity=0.088 Sum_probs=53.1
Q ss_pred eeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCCc
Q 018019 29 LPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD 105 (362)
Q Consensus 29 lpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~ 105 (362)
+|.-|+ ..|..+|+.+.+.... +|+|+-+... +...+.+.........+.........|.+.+...+......+.
T Consensus 9 ip~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~--d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 86 (291)
T COG0463 9 IPTYNEEEYLPEALESLLNQTYKDFEIIVVDDGST--DGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAGLEYARGDY 86 (291)
T ss_pred EeccchhhhHHHHHHHHHhhhhcceEEEEEeCCCC--CChHHHHHHHhhhcceEEEeecccCCChHHHHHhhHHhccCCE
Confidence 455555 7788888888776543 5555543221 2222333322111112323333456888888888888776677
Q ss_pred EEEEeCCcccCCChHHHHH
Q 018019 106 VLVVSGDLVSDVPPGAVTA 124 (362)
Q Consensus 106 ~lv~~~D~i~~~~l~~~l~ 124 (362)
++.+.+|.+.+..+..+++
T Consensus 87 ~~~~d~d~~~~~~~~~~~~ 105 (291)
T COG0463 87 IVFLDADDQHPPELIPLVA 105 (291)
T ss_pred EEEEccCCCCCHHHHHHHH
Confidence 8889999664334444333
No 192
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=25.95 E-value=40 Score=23.36 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=7.9
Q ss_pred CCCccCCCceeccccccc
Q 018019 344 QNNIIHPSAELGSKTTQL 361 (362)
Q Consensus 344 ~~~~i~~~~~i~~k~~i~ 361 (362)
.++.+.++++||+++.|+
T Consensus 55 ~~~~i~~~~~ig~~~~i~ 72 (78)
T cd00208 55 ANAVIHGGVKIGDNAVIG 72 (78)
T ss_pred CCCEEeCCCEECCCCEEC
Confidence 334444444444444443
No 193
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=25.68 E-value=41 Score=29.41 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=15.6
Q ss_pred CCCCCCCCCCccCCCceecccccccC
Q 018019 337 SGYNFSAQNNIIHPSAELGSKTTQLA 362 (362)
Q Consensus 337 ~~~~~~~~~~~i~~~~~i~~k~~i~~ 362 (362)
....+.+.++.|.++++||+++.|+|
T Consensus 135 Gd~v~IG~~~~I~~gv~IG~~~vIga 160 (203)
T PRK09527 135 GNNVWIGSHVVINPGVTIGDNSVIGA 160 (203)
T ss_pred CCCcEECCCCEEcCCCEECCCCEECC
Confidence 33445555666666666666666654
No 194
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=24.71 E-value=1.1e+02 Score=23.43 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred CcchHHHHHHHHHhCCCCeEEEE
Q 018019 33 NRPVLSYVLEQLELSNIKDLIVV 55 (362)
Q Consensus 33 g~plI~~~l~~l~~~gi~~v~vv 55 (362)
+.|-|+-.++.+...|+++|+|+
T Consensus 40 ~~P~i~~~l~~l~~~G~~~i~lv 62 (103)
T cd03413 40 GYPGLDDVLAKLKKAGIKKVTLM 62 (103)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 78999999999999999998876
No 195
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=24.41 E-value=40 Score=28.27 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=12.3
Q ss_pred CCCCCCCccCCCceecccccccC
Q 018019 340 NFSAQNNIIHPSAELGSKTTQLA 362 (362)
Q Consensus 340 ~~~~~~~~i~~~~~i~~k~~i~~ 362 (362)
.+...++.|.++++||+++.|+|
T Consensus 125 ~~Ig~~a~I~~gv~Ig~~~~Vga 147 (169)
T cd03357 125 VWIGGGVIILPGVTIGDNSVIGA 147 (169)
T ss_pred EEECCCCEEeCCCEECCCCEECC
Confidence 34444555555555565555553
No 196
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=24.24 E-value=48 Score=25.32 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=12.9
Q ss_pred CCCCCCCCccCCCceecccccccC
Q 018019 339 YNFSAQNNIIHPSAELGSKTTQLA 362 (362)
Q Consensus 339 ~~~~~~~~~i~~~~~i~~k~~i~~ 362 (362)
..+...++.|.++++||+.+.|+|
T Consensus 62 ~~~ig~~~~i~~g~~Ig~~~~i~~ 85 (107)
T cd05825 62 GAWVAAEAFVGPGVTIGEGAVVGA 85 (107)
T ss_pred CCEECCCCEECCCCEECCCCEECC
Confidence 344445555555566665555553
No 197
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=23.68 E-value=1.2e+02 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.6
Q ss_pred eCCcchHHHHHHHHHhCCCCeEEEEcc
Q 018019 31 VANRPVLSYVLEQLELSNIKDLIVVVE 57 (362)
Q Consensus 31 v~g~plI~~~l~~l~~~gi~~v~vv~~ 57 (362)
.+|+|+.+++++.+.+.|+.-..|.-+
T Consensus 16 ~~g~~l~~~ll~~~~~~gi~GaTV~rg 42 (101)
T PF02641_consen 16 WGGKPLYEWLLERAREAGIAGATVFRG 42 (101)
T ss_dssp ETTEEHHHHHHHHHHHTT-SEEEEEE-
T ss_pred cCceEHHHHHHHHHHHCCCCeEEEEcc
Confidence 578999999999999999998888754
No 198
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=23.47 E-value=6.2e+02 Score=23.74 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=60.9
Q ss_pred EEeCCCCCCCCCC-CCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc-
Q 018019 7 VLAGGTSKKLVPL-VSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV- 84 (362)
Q Consensus 7 IlA~G~gtrl~pl-~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~- 84 (362)
.-|||+|-...-. ..-+.|--.+-+.|...=++..+.|.+.|+...++-+.... |.++.+...
T Consensus 33 ~~aGGKGINVa~vL~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~T---------------Rinvki~~~~ 97 (310)
T COG1105 33 KTAGGKGINVARVLKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDT---------------RINVKILDEE 97 (310)
T ss_pred ecCCCCceeHHHHHHHcCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCC---------------eeeEEEEecC
Confidence 4577777643210 01133333344445666677777777888877777665332 223333322
Q ss_pred ---------CCCCCH---HHHHHHHHHh-cCCCcEEEEeCCc---ccCCChHHHHHHHHhcCCeE
Q 018019 85 ---------PEDVGT---AGALRAIAHH-LTAKDVLVVSGDL---VSDVPPGAVTAAHRRHDAVV 133 (362)
Q Consensus 85 ---------~~~~gt---~~al~~~~~~-i~~~~~lv~~~D~---i~~~~l~~~l~~h~~~~a~~ 133 (362)
+.+.=+ .+.+..-.+. +.+.+++|++|-+ +....+.++++..++.++-+
T Consensus 98 ~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~v 162 (310)
T COG1105 98 DGEETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKV 162 (310)
T ss_pred CCcEEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeE
Confidence 111111 2333333333 5677899999985 44445788888887765543
No 199
>PRK09453 phosphodiesterase; Provisional
Probab=22.98 E-value=3.6e+02 Score=22.55 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHhcC--CCcEEEEeCCcccCC---------ChHHHHHHHHhcCCeEEE
Q 018019 85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDLVSDV---------PPGAVTAAHRRHDAVVTA 135 (362)
Q Consensus 85 ~~~~gt~~al~~~~~~i~--~~~~lv~~~D~i~~~---------~l~~~l~~h~~~~a~~t~ 135 (362)
++..|...++..+.+.+. .-+.+++.||++... ...++++..++.+..+.+
T Consensus 7 SD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~ 68 (182)
T PRK09453 7 SDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIA 68 (182)
T ss_pred EeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEE
Confidence 344455566666666552 356899999986421 245566665554444443
No 200
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=22.69 E-value=5.7e+02 Score=23.01 Aligned_cols=93 Identities=17% Similarity=0.108 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccC
Q 018019 37 LSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD 116 (362)
Q Consensus 37 I~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~ 116 (362)
|+.+.+.+.++ ++|+++..... ..+..++...+ .+.+..+....+ .+.+......+.+++++++-+--=..
T Consensus 118 l~~~~~~i~~a--~~I~i~G~G~s--~~~A~~~~~~l-~~~g~~~~~~~d----~~~~~~~~~~~~~~Dv~I~iS~sg~~ 188 (278)
T PRK11557 118 LHECVTMLRSA--RRIILTGIGAS--GLVAQNFAWKL-MKIGINAVAERD----MHALLATVQALSPDDLLLAISYSGER 188 (278)
T ss_pred HHHHHHHHhcC--CeEEEEecChh--HHHHHHHHHHH-hhCCCeEEEcCC----hHHHHHHHHhCCCCCEEEEEcCCCCC
Confidence 34444455444 57777765432 35556665432 245655544222 23333444556667776665443334
Q ss_pred CChHHHHHHHHhcCCeEEEEEe
Q 018019 117 VPPGAVTAAHRRHDAVVTAMIC 138 (362)
Q Consensus 117 ~~l~~~l~~h~~~~a~~t~l~~ 138 (362)
.++..+++..+++++.+.+++.
T Consensus 189 ~~~~~~~~~ak~~ga~iI~IT~ 210 (278)
T PRK11557 189 RELNLAADEALRVGAKVLAITG 210 (278)
T ss_pred HHHHHHHHHHHHcCCCEEEEcC
Confidence 4566777888888887665543
No 201
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=22.11 E-value=52 Score=26.93 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=8.1
Q ss_pred CCCccCCCceeccccccc
Q 018019 344 QNNIIHPSAELGSKTTQL 361 (362)
Q Consensus 344 ~~~~i~~~~~i~~k~~i~ 361 (362)
.++++.++++||+++.|+
T Consensus 84 ~~~~i~~gv~Ig~~~vIg 101 (145)
T cd03349 84 HGATILPGVTIGDGAVIA 101 (145)
T ss_pred CCCEEeCCCEECCCCEEC
Confidence 344444444444444444
No 202
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=21.80 E-value=37 Score=32.58 Aligned_cols=18 Identities=11% Similarity=0.420 Sum_probs=12.8
Q ss_pred CCCccCCCceeccccccc
Q 018019 344 QNNIIHPSAELGSKTTQL 361 (362)
Q Consensus 344 ~~~~i~~~~~i~~k~~i~ 361 (362)
+.|+||++|.||++++|.
T Consensus 350 k~SviG~nC~Ig~~~~v~ 367 (433)
T KOG1462|consen 350 KRSVIGSNCDIGERVKVA 367 (433)
T ss_pred eeeeecCCccccCCcEEE
Confidence 556777777777777764
No 203
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=21.58 E-value=5.5e+02 Score=22.48 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=23.1
Q ss_pred CCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEEEe
Q 018019 102 TAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAMIC 138 (362)
Q Consensus 102 ~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l~~ 138 (362)
..+.++++.+|.+.+.+ +..+++.+.. +..+.++..
T Consensus 73 ~~e~i~~~DaD~~~~~~~l~~l~~~~~~-~p~vg~v~g 109 (244)
T cd04190 73 DPEFILLVDADTKFDPDSIVQLYKAMDK-DPEIGGVCG 109 (244)
T ss_pred CCCEEEEECCCCcCCHhHHHHHHHHHHh-CCCEEEEEe
Confidence 35678899999877665 6777766543 344444433
No 204
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=21.56 E-value=9.7e+02 Score=25.29 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=57.1
Q ss_pred eeeeeCCcch------HHHHHHHHHhCCC---CeEEEEccCcchHHHHHH-----HHHhhhcCCcceEEEEcCC-CCCHH
Q 018019 27 ALLPVANRPV------LSYVLEQLELSNI---KDLIVVVEGADAALRVGG-----WISAAYVDRLHVEVATVPE-DVGTA 91 (362)
Q Consensus 27 ~llpv~g~pl------I~~~l~~l~~~gi---~~v~vv~~~~~~~~~i~~-----~~~~~~~~~~~i~i~~~~~-~~gt~ 91 (362)
-++|+.|... |.-+++.+...+- -+|+|+....+......+ .+...+....++.+..-.. ...-+
T Consensus 128 VliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~Ka 207 (691)
T PRK05454 128 ILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKA 207 (691)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccH
Confidence 5689999753 5566666655432 257777654432111111 1222222223444443222 22234
Q ss_pred HHHHHHHHhcC--CCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 018019 92 GALRAIAHHLT--AKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM 136 (362)
Q Consensus 92 ~al~~~~~~i~--~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l 136 (362)
+.+....+... .++++++.+|.+..-| +..++..+.. +..+.++
T Consensus 208 GNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~-dP~vGlV 254 (691)
T PRK05454 208 GNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA-NPRAGLI 254 (691)
T ss_pred HHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh-CcCEEEE
Confidence 56666655543 3789999999766655 6777776543 3444444
No 205
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=21.15 E-value=7.1e+02 Score=23.58 Aligned_cols=90 Identities=21% Similarity=0.118 Sum_probs=50.5
Q ss_pred eeeeCCcc-hHHHHHHHHHhC--C--CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCC----C----------C
Q 018019 28 LLPVANRP-VLSYVLEQLELS--N--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPE----D----------V 88 (362)
Q Consensus 28 llpv~g~p-lI~~~l~~l~~~--g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~----~----------~ 88 (362)
++...+|| -+..+|+.|.++ + -.+++|+..... +...+.+..+ . ..+.++.+.. . .
T Consensus 5 lv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~--~~~~~~v~~~-~--~~i~~i~~~~~~~~~~~~~~~~~~y~ 79 (334)
T cd02514 5 LVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGY--EEVADVAKSF-G--DGVTHIQHPPISIKNVNPPHKFQGYY 79 (334)
T ss_pred EEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCc--hHHHHHHHhh-c--cccEEEEcccccccccCcccccchhh
Confidence 45667887 699999999876 3 346777755332 2334444332 1 1233333211 1 1
Q ss_pred CHHH----HHHHHHHhcCCCcEEEEeCCcccCCChHHH
Q 018019 89 GTAG----ALRAIAHHLTAKDVLVVSGDLVSDVPPGAV 122 (362)
Q Consensus 89 gt~~----al~~~~~~i~~~~~lv~~~D~i~~~~l~~~ 122 (362)
+.+. ++-.+......+.++++-.|++...|+-..
T Consensus 80 ~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~y 117 (334)
T cd02514 80 RIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSY 117 (334)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHH
Confidence 2233 333333333357799999999888775433
No 206
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=20.97 E-value=1.7e+02 Score=23.56 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=45.2
Q ss_pred eEEEEeCCCCC--CCCCCCCCCCCeeeeeeCCcc-hHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhc
Q 018019 4 QVVVLAGGTSK--KLVPLVSKEVPKALLPVANRP-VLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYV 74 (362)
Q Consensus 4 ~avIlA~G~gt--rl~pl~t~~~pK~llpv~g~p-lI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~ 74 (362)
..||+.-|+.- +++-+ . -.+.+-++|.. .....++.+..+- -+.|+|++......+.++..+..++.
T Consensus 10 ~~vIVVEGK~D~~~l~~~-~---~~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~D~~Ge~Irk~l~~~l~ 80 (127)
T COG1658 10 KEVIVVEGKDDTASLKRL-G---DAGVIITNGSAINSLETIELIKKAQKYKGVIILTDPDRKGERIRKKLKEYLP 80 (127)
T ss_pred CceEEEeCCcHHHHHHHh-c---CCceEEEcCCccchHHHHHHHHHhhccCCEEEEeCCCcchHHHHHHHHHHhc
Confidence 56788887753 44433 2 25677778884 4488888887753 56689998876666777777766543
No 207
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=20.94 E-value=55 Score=27.33 Aligned_cols=17 Identities=0% Similarity=-0.080 Sum_probs=7.0
Q ss_pred CCccCCCceeccccccc
Q 018019 345 NNIIHPSAELGSKTTQL 361 (362)
Q Consensus 345 ~~~i~~~~~i~~k~~i~ 361 (362)
++.|.++++||+++.|+
T Consensus 95 ~a~I~~gv~Ig~~~~Ig 111 (164)
T cd04646 95 KSFVGKNVIITDGCIIG 111 (164)
T ss_pred CCEECCCCEECCCCEEe
Confidence 33444444444444443
No 208
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=20.63 E-value=6.8e+02 Score=25.16 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=54.2
Q ss_pred CCCCeeeeeeCC-----c-chHHHHHHHHHhC---CCCeEEEEccCcchHHHHHHHHHh-------hhcCCcceEEEEcC
Q 018019 22 KEVPKALLPVAN-----R-PVLSYVLEQLELS---NIKDLIVVVEGADAALRVGGWISA-------AYVDRLHVEVATVP 85 (362)
Q Consensus 22 ~~~pK~llpv~g-----~-plI~~~l~~l~~~---gi~~v~vv~~~~~~~~~i~~~~~~-------~~~~~~~i~i~~~~ 85 (362)
...||.|+|+.. + |+=+|..+...=+ |.-++-.-+++.. .+.+.+++.. .+.-++.|.+..|.
T Consensus 164 g~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTVS~eH-~~~F~~~~~~~~~~~e~~~~v~f~IsfS~Qk 242 (513)
T PF14134_consen 164 GNLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTVSPEH-LDLFKKEVEEVKPKYEKKYGVKFEISFSEQK 242 (513)
T ss_pred CCCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEeeCHHH-HHHHHHHHHHHHHHHHHhhCceEEEEecccC
Confidence 468999999963 4 8999999987432 3444444455322 2333443332 12122333333221
Q ss_pred C-----------------------CCCHHHHHHHHHHhcCCCcEEEEeCCcccCCCh
Q 018019 86 E-----------------------DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPP 119 (362)
Q Consensus 86 ~-----------------------~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l 119 (362)
. ..|--+||...+..+..+-++|=+-|.+.+..+
T Consensus 243 ~sTDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNLN~ldaDiIFIKNIDNVvpd~~ 299 (513)
T PF14134_consen 243 PSTDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENLNDLDADIIFIKNIDNVVPDRL 299 (513)
T ss_pred CCCCeeEECCCCCccCCCCCCEEeCCCcchHHHhhhccccCCEEEEeCccccCCccc
Confidence 0 012236888888878656567777887665444
No 209
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=20.35 E-value=58 Score=28.00 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=12.0
Q ss_pred CCCCCCCccCCCceecccccccC
Q 018019 340 NFSAQNNIIHPSAELGSKTTQLA 362 (362)
Q Consensus 340 ~~~~~~~~i~~~~~i~~k~~i~~ 362 (362)
.....++.|.++++||+.|+|+|
T Consensus 137 ~~ig~~~~i~~g~~Ig~~~~Iga 159 (192)
T PRK09677 137 VWIGENVTILPGVSIGNGCIVGA 159 (192)
T ss_pred cEECCCCEEcCCCEECCCCEECC
Confidence 33344455555555555555554
No 210
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=20.08 E-value=86 Score=30.68 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=49.7
Q ss_pred cEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcE--------EE
Q 018019 105 DVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF--------LL 176 (362)
Q Consensus 105 ~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~--------l~ 176 (362)
-++|..+|.+....-...+. + .+++++++..+.+. + -.+++|++.+|+++.. +.
T Consensus 55 Gv~V~s~D~vl~~~~~~~~~-~--~~~g~~~la~p~~~----~-----------~at~HGVfv~~~~~~~~~~~~~~~v~ 116 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPDDPLID-W--DEPGVTALAHPSSL----E-----------YATNHGVFVLDRQGPDEEDLEYREVK 116 (414)
T ss_pred ceEEEecccccccCccccCC-C--CCCCEEEEEeeCCH----H-----------HhcCCeEEEeCCCCCccccchhhhHH
Confidence 47999999333222111222 1 23667776554331 1 1467899999988731 22
Q ss_pred EeecCcccccccccchHHHhhcCc-eeeecCceeceEEeeCHHHHHHHHh
Q 018019 177 HIATGAELEKDTRIRKSILRAVGQ-MDIRADLMDAHMYAFNRSVLQEVLD 225 (362)
Q Consensus 177 ~~~~~~~~ek~~~i~~~~l~~~~~-~~~~~~l~~~giYi~s~~vl~~~~~ 225 (362)
.+-.++..++ +.+... ..-.....++|++.|+.+..+.++.
T Consensus 117 ~~L~KpS~ee--------m~~~~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 117 DFLQKPSEEE--------MRASGAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred HhhcCCCHHH--------HHhCCcccCCCcccccccceeccHHHHHHHHH
Confidence 3322222111 111111 1122456699999999888776653
Done!