BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018020
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YDW|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At4g09670
pdb|1YDW|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At4g09670
pdb|2Q4E|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
pdb|2Q4E|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
Length = 362
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 232/360 (64%), Positives = 287/360 (79%), Gaps = 3/360 (0%)
Query: 2 ATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV 61
ATE+Q IR G+ G ADIARK+SRAI LAPNA +S VASRSLEKA FA ANN+P K+
Sbjct: 2 ATETQ--IRIGVXGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKI 59
Query: 62 YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACE 121
+GSYE+LL+D +IDA+Y+PLPTS+HV+WAI A+K KH+L+EKP+A NV EFD I++ACE
Sbjct: 60 HGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAXNVTEFDKIVDACE 119
Query: 122 ENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXX 181
NGVQ+ DGT WVHNPRTA +KEF+SD +RFGQL+T+ SCFSFAGD +FLKNDIRVKP
Sbjct: 120 ANGVQIXDGTXWVHNPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPGL 179
Query: 182 XXXXXXXXXXWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATF 241
WY IR+ L AN++ELPKTV A G VLNEAGVILSCGASL W+DGR AT
Sbjct: 180 DGLGALGDAGWYAIRATLLANNFELPKTVTAFPGAVLNEAGVILSCGASLSWEDGRTATI 239
Query: 242 SCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHV 301
CSFLAN+T +ITA GT G+L++HDFIIP++E EAS+ T+T+ +FNDLVT WV PSEH
Sbjct: 240 YCSFLANLTXEITAIGTKGTLRVHDFIIPYKETEASFTTSTKAWFNDLVTAWVSPPSEHT 299
Query: 302 VTTDIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360
V T++PQEAC VREF+RLV IK NG+KP+ WP ISRKTQL++DAVK S+++ ++ I +
Sbjct: 300 VKTELPQEACXVREFARLVGEIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQQISL 359
>pdb|4HAD|A Chain A, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
pdb|4HAD|B Chain B, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
pdb|4HAD|C Chain C, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
pdb|4HAD|D Chain D, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
Length = 350
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 6 QAAIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
Q+ +RFGII A I R + AI A N V++A+ASR L +A A + P +GS
Sbjct: 21 QSXLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREXADRFSVP---HAFGS 77
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
YE L IDAVY+PLPTS H++W+I A KH++ EKP+AL + D ++ A + N
Sbjct: 78 YEEXLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNK 137
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS-FAGDAEFLKN 173
V + + ++P +++ + D G LR + F+ F DA +N
Sbjct: 138 VVVTEAYXITYSPVWQKVRSLI-DEGAIGSLRHVQGAFTYFNRDASNXRN 186
>pdb|3RBV|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp
pdb|3RC1|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp And
Tdp-Benzene
pdb|3RC2|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata In Complex With Tdp-Benzene And
Nadp; Open Conformation
Length = 350
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 152/345 (44%), Gaps = 32/345 (9%)
Query: 9 IRFGIIGAADIA-RKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
IR G+IG ADIA R+ A+ P ++A+ASR ++A F + P V G Y A
Sbjct: 28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEP---VEG-YPA 83
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
LL+ D+DAVY+PLP +H +W + KH+L EKP+ + + + + E G+ L
Sbjct: 84 LLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLL 143
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXXXXXXXX 187
M+ M++H+P+ Q+ + + D G++R+ + F+ + DIR +
Sbjct: 144 MENFMFLHHPQHRQVADML-DEGVIGEIRSFAASFTIPPKPQ---GDIRYQADVGGGALL 199
Query: 188 XXXXWYGIRS--ILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245
Y IR+ + D E V+ + V++ A L G A +
Sbjct: 200 DIGV-YPIRAAGLFLGADLEFVGAVLRHE----RDRDVVVGGNALLTTRQGVTAQLTFGM 254
Query: 246 LANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTD 305
T + G+ G L ++ P A+Y D +V LP+
Sbjct: 255 EHAYTNNYEFRGSTGRLWMNRVFTP----PATYQPVVHIERQDHAEQFV-LPAHD----- 304
Query: 306 IPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTS 350
Q A +R F++ V +G P ++W S + ++DAV+T
Sbjct: 305 --QFAKSIRAFAQAVL---SGEHP-REWSEDSLRQASLVDAVRTG 343
>pdb|3RCB|A Chain A, Crystal Structure Of The K102e Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 152/345 (44%), Gaps = 32/345 (9%)
Query: 9 IRFGIIGAADIA-RKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
IR G+IG ADIA R+ A+ P ++A+ASR ++A F + P V G Y A
Sbjct: 28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEP---VEG-YPA 83
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
LL+ D+DAVY+PLP +H +W + KH+L E+P+ + + + + E G+ L
Sbjct: 84 LLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEEPLTTDRPQAERLFAVARERGLLL 143
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXXXXXXXX 187
M+ M++H+P+ Q+ + + D G++R+ + F+ + DIR +
Sbjct: 144 MENFMFLHHPQHRQVADML-DEGVIGEIRSFAASFTIPPKPQ---GDIRYQADVGGGALL 199
Query: 188 XXXXWYGIRS--ILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245
Y IR+ + D E V+ + V++ A L G A +
Sbjct: 200 DIGV-YPIRAAGLFLGADLEFVGAVLRHE----RDRDVVVGGNALLTTRQGVTAQLTFGM 254
Query: 246 LANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTD 305
T + G+ G L ++ P A+Y D +V LP+
Sbjct: 255 EHAYTNNYEFRGSTGRLWMNRVFTP----PATYQPVVHIERQDHAEQFV-LPAHD----- 304
Query: 306 IPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTS 350
Q A +R F++ V +G P ++W S + ++DAV+T
Sbjct: 305 --QFAKSIRAFAQAVL---SGEHP-REWSEDSLRQASLVDAVRTG 343
>pdb|3RC7|A Chain A, Crystal Structure Of The Y186f Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 6/156 (3%)
Query: 9 IRFGIIGAADIA-RKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
IR G+IG ADIA R+ A+ P ++A+ASR ++A F + P V G Y A
Sbjct: 28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEP---VEG-YPA 83
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
LL+ D+DAVY+PLP +H +W + KH+L EKP+ + + + + E G+ L
Sbjct: 84 LLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLL 143
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163
M+ M++H+P+ Q+ + + D G++R+ + F+
Sbjct: 144 MENFMFLHHPQHRQVADML-DEGVIGEIRSFAASFT 178
>pdb|3RC9|A Chain A, Crystal Structure Of The K102a Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 151/345 (43%), Gaps = 32/345 (9%)
Query: 9 IRFGIIGAADIA-RKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
IR G+IG ADIA R+ A+ P ++A+ASR ++A F + P V G Y A
Sbjct: 28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEP---VEG-YPA 83
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
LL+ D+DAVY+PLP +H +W + KH+L E P+ + + + + E G+ L
Sbjct: 84 LLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEAPLTTDRPQAERLFAVARERGLLL 143
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXXXXXXXX 187
M+ M++H+P+ Q+ + + D G++R+ + F+ + DIR +
Sbjct: 144 MENFMFLHHPQHRQVADML-DEGVIGEIRSFAASFTIPPKPQ---GDIRYQADVGGGALL 199
Query: 188 XXXXWYGIRS--ILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245
Y IR+ + D E V+ + V++ A L G A +
Sbjct: 200 DIGV-YPIRAAGLFLGADLEFVGAVLRHE----RDRDVVVGGNALLTTRQGVTAQLTFGM 254
Query: 246 LANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTD 305
T + G+ G L ++ P A+Y D +V LP+
Sbjct: 255 EHAYTNNYEFRGSTGRLWMNRVFTP----PATYQPVVHIERQDHAEQFV-LPAHD----- 304
Query: 306 IPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTS 350
Q A +R F++ V +G P ++W S + ++DAV+T
Sbjct: 305 --QFAKSIRAFAQAVL---SGEHP-REWSEDSLRQASLVDAVRTG 343
>pdb|3E9M|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|B Chain B, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|C Chain C, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|D Chain D, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
Length = 330
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
IR+GI A I + + + A + +ASR LE A AK P YGSYE L
Sbjct: 6 IRYGIXSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKXAKELAIPV---AYGSYEEL 62
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
D+ ID +Y+P H A + K +L+EKP LN AE + + +E GV L
Sbjct: 63 CKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLX 122
Query: 129 DGTMWVHNPRTAQMKEFVSD 148
+ V P T ++K + +
Sbjct: 123 EAQKSVFLPITQKVKATIQE 142
>pdb|3EVN|A Chain A, Crystal Structure Of Putative Oxidoreductase From
Streptococcus Agalactiae 2603vR
Length = 329
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
S + +R+G++ A +A + + LA N + AV+SR+LE A FA + P K Y
Sbjct: 2 SLSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLP---KAYDK 58
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
E +L D+ ID +Y+ H K A + KH+L+EKP L + + + E
Sbjct: 59 LEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCN 118
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164
+ LM+ V P T +K+ ++ + G++ ++ S ++
Sbjct: 119 LFLMEAQKSVFIPMTQVIKKLLASGE-IGEVISISSTTAY 157
>pdb|2O48|X Chain X, Crystal Structure Of Mammalian Dimeric Dihydrodiol
Dehydrogenase
pdb|2O4U|X Chain X, Crystal Structure Of Mammalian Dimeric Dihydrodiol
Dehydrogenase
pdb|2POQ|X Chain X, Dimeric Dihydrodiol Dehydrogenase Complexed With
Inhibitor, Isoascorbic Acid
pdb|3OHS|X Chain X, Crystal Structure Of Mammalian Dimeric Dihydrodiol
Dehydrogenase In Complex With Dihydroxyacetone
Length = 334
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 19/262 (7%)
Query: 8 AIRFGIIGAADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A+R+GI+ I+ + + P + + AVA+R L +A FA+ ++ P K YGSY
Sbjct: 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIP---KAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L D +++ Y+ H + K +L EKPM +N AE ++ G+
Sbjct: 59 EELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGL 118
Query: 126 QLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXXXXXX 185
LM+ P + ++ ++ G LR AEF KN V
Sbjct: 119 FLMEAIWTRFFPASEALRSVLAQ-GTLGDLRVAR--------AEFGKNLTHVPRAVDWAQ 169
Query: 186 XXXXXXWYGIRSILWAN---DYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFS 242
GI + + + + P+ + M +E GV + L + +F+
Sbjct: 170 AGGALLDLGIYCVQFISMVFGGQKPEKISVMG--RRHETGVDDTVTVLLQYPGEVHGSFT 227
Query: 243 CSFLANMTMDITATGTNGSLQL 264
CS A ++ + +GT G QL
Sbjct: 228 CSITAQLSNTASVSGTKGMAQL 249
>pdb|3MOI|A Chain A, The Crystal Structure Of The Putative Dehydrogenase From
Bordetella Bronchiseptica Rb50
Length = 387
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 9 IRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
IRFGI G L + A+ P+A + A + + F K P V+ +
Sbjct: 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIP----VFATLAE 58
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
++ +DAVY+ P H + + +++ H+++EKP+ L+ E D ++ A E GV L
Sbjct: 59 MMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHL 118
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164
+ GT H+P ++ V + G++ +M +CF++
Sbjct: 119 VVGTSRSHDPVVRTLRAIVQEGS-VGRV-SMLNCFNY 153
>pdb|2GLX|A Chain A, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|B Chain B, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|C Chain C, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|D Chain D, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|E Chain E, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|F Chain F, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
Length = 332
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 13/159 (8%)
Query: 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL 69
R+G+IGA+ IAR+ A + ++ S S E+ +A N K S E L+
Sbjct: 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGI---GKSVTSVEELV 58
Query: 70 DDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129
D D+DAVY+ +H + ++ + KH+L EKP+A+ + + ++ A E GV L
Sbjct: 59 GDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVL-- 116
Query: 130 GTMWVHNPRTAQMKEFVSDPQRFGQL------RTMHSCF 162
GT H+ R A + D G++ R H+ +
Sbjct: 117 GTN--HHLRNAAAHRAMRDAIAEGRIGRPIAARVFHAVY 153
>pdb|1RYD|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase From
Zymomonas Mobilis
pdb|1RYD|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase From
Zymomonas Mobilis
pdb|1RYE|A Chain A, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|B Chain B, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|C Chain C, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|D Chain D, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
Length = 387
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 35 LSAVASRSLEKATNFAKANNFPPDAKV-YGSYEALLDDKDIDAVYLPLPTSMHVKWAISV 93
+ A+ S + EKA A P Y +++ + D IDAVY+ LP S+H ++AI
Sbjct: 65 IEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRA 124
Query: 94 AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQ--R 151
+ KH++ EKPMA +VA+ +++A + +LM G ++P + + + Q +
Sbjct: 125 FKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGK 184
Query: 152 FGQLRTMHS 160
G + T +S
Sbjct: 185 LGMVTTDNS 193
>pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase
pdb|1OFG|B Chain B, Glucose-Fructose Oxidoreductase
pdb|1OFG|C Chain C, Glucose-Fructose Oxidoreductase
pdb|1OFG|D Chain D, Glucose-Fructose Oxidoreductase
pdb|1OFG|E Chain E, Glucose-Fructose Oxidoreductase
pdb|1OFG|F Chain F, Glucose-Fructose Oxidoreductase
Length = 381
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 35 LSAVASRSLEKATNFAKANNFPPDAKV-YGSYEALLDDKDIDAVYLPLPTSMHVKWAISV 93
+ A+ S + EKA A P Y +++ + D IDAVY+ LP S+H ++AI
Sbjct: 59 IEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRA 118
Query: 94 AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQ--R 151
+ KH++ EKPMA +VA+ +++A + +LM G ++P + + + Q +
Sbjct: 119 FKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGK 178
Query: 152 FGQLRTMHS 160
G + T +S
Sbjct: 179 LGMVTTDNS 187
>pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|C Chain C, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|D Chain D, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|E Chain E, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|F Chain F, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|G Chain G, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|H Chain H, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|I Chain I, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|J Chain J, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|K Chain K, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|L Chain L, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6C|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6C|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6B|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6B|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6A|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
pdb|1H6A|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
Length = 433
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 35 LSAVASRSLEKATNFAKANNFPPDAKV-YGSYEALLDDKDIDAVYLPLPTSMHVKWAISV 93
+ A+ S + EKA A P Y +++ + D IDAVY+ LP S+H ++AI
Sbjct: 111 IEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRA 170
Query: 94 AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQ--R 151
+ KH++ EKPMA +VA+ +++A + +LM G ++P + + + Q +
Sbjct: 171 FKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGK 230
Query: 152 FGQLRTMHS 160
G + T +S
Sbjct: 231 LGMVTTDNS 239
>pdb|1ZH8|A Chain A, Crystal Structure Of Oxidoreductase (tm0312) From
Thermotoga Maritima At 2.50 A Resolution
pdb|1ZH8|B Chain B, Crystal Structure Of Oxidoreductase (tm0312) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 107/274 (39%), Gaps = 17/274 (6%)
Query: 9 IRFGIIGAADIARKLSRAI--TLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
IR GI+G AR+L L+ ++AV SR+ A FAK P V+ SYE
Sbjct: 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKXVGNPA---VFDSYE 75
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126
LL+ +DAV L LP +++ + +K H++ EKP++ +V ++ E++
Sbjct: 76 ELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKT 135
Query: 127 LMDGTMWVHNPRTAQMKEFV-----SDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXX 181
+ + H P + KE V DP + +++ D R KP
Sbjct: 136 VYIAENFRHVPAFWKAKELVESGAIGDP----VFXNWQIWVGXDENNKYVHTDWRKKPKH 191
Query: 182 XXXXXXXXXXWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATF 241
+ L + E V P+L + S +++G V +
Sbjct: 192 VGGFLSDGGVHHAAAXRLILGEIEWISAVAKDLSPLLGGXDFLSSI---FEFENGTVGNY 248
Query: 242 SCSFLANMTMDITATGTNGSLQLHDFIIPFREEE 275
+ S+ TGT G + + I EEE
Sbjct: 249 TISYSLKGNERFEITGTKGKISISWDKIVLNEEE 282
>pdb|1EVJ|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|C Chain C, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|D Chain D, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
Length = 352
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 62 YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACE 121
Y +++ + D IDAVY+ LP S+H ++AI + KH++ EKPMA +VA+ +++A +
Sbjct: 58 YSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAK 117
Query: 122 ENGVQLMDGTMWVHNPRTAQMKEFVSDPQ--RFGQLRTMHS 160
+LM G ++P + + + Q + G + T +S
Sbjct: 118 AANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNS 158
>pdb|4IQ0|A Chain A, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
pdb|4IQ0|B Chain B, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
pdb|4IQ0|C Chain C, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
pdb|4IQ0|D Chain D, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
Length = 328
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 4/149 (2%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
S A ++ G+IG I+ A + L A+ SR LE A FA + +++
Sbjct: 1 SNAXLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQ---NIQLFDQ 57
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
E D VY+ P S+H A + KH+++EKP E+ ++ E+N
Sbjct: 58 LEVFFKSS-FDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNN 116
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153
+ + H + F++D Q G
Sbjct: 117 CFIFEAARNYHEKAFTTIXNFLADXQVLG 145
>pdb|3EZY|A Chain A, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|B Chain B, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|C Chain C, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|D Chain D, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
Length = 344
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVAS------RSLEKATNFAKANNFPPDAKV 61
++R G+IG I + + + +A+L A++ R +++ KA P +
Sbjct: 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHE--- 58
Query: 62 YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACE 121
L++D ++DAV + T+ H + I+ A+ KKH+ EKP++LN+A+ D ++ +
Sbjct: 59 ------LIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETK 112
Query: 122 ENGVQLMDGTMWVHNPRTAQMKEFVSD 148
+ V L G + ++KE V +
Sbjct: 113 KADVILFTGFNRRFDRNFKKLKEAVEN 139
>pdb|2HO5|A Chain A, Crystal Structure Of Oxidoreductase, GfoIDHMOCA FAMILY
FROM Streptococcus Pneumoniae
pdb|2HO5|B Chain B, Crystal Structure Of Oxidoreductase, GfoIDHMOCA FAMILY
FROM Streptococcus Pneumoniae
Length = 325
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
++ G+IG I+ A + L A+ SR LE A FA + +++ E
Sbjct: 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQ---NIQLFDQLEVF 58
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
D VY+ P S+H A + KH+++EKP E+ ++ E+N +
Sbjct: 59 FKSS-FDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIF 117
Query: 129 DGTMWVHNPRTAQMKEFVSDPQRFG 153
+ H +K F++D Q G
Sbjct: 118 EAARNYHEKAFTTIKNFLADKQVLG 142
>pdb|3DB2|A Chain A, Crystal Structure Of A Putative Nadph-Dependent
Oxidoreductase (Dhaf_2064) From Desulfitobacterium
Hafniense Dcb-2 At 1.70 A Resolution
pdb|3DB2|B Chain B, Crystal Structure Of A Putative Nadph-Dependent
Oxidoreductase (Dhaf_2064) From Desulfitobacterium
Hafniense Dcb-2 At 1.70 A Resolution
pdb|3DB2|C Chain C, Crystal Structure Of A Putative Nadph-Dependent
Oxidoreductase (Dhaf_2064) From Desulfitobacterium
Hafniense Dcb-2 At 1.70 A Resolution
Length = 354
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%)
Query: 14 IGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKD 73
IG A + A T + L SR+ +K F K N DA + EALL +D
Sbjct: 11 IGLGRWAYVXADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDA----TXEALLARED 66
Query: 74 IDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133
++ V + +P H + A+ KH+ +EKP+++++ I +E GV+ + G
Sbjct: 67 VEXVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSS 126
Query: 134 VHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKP 179
+ KE + D + G++ ++ + FS E K + R +P
Sbjct: 127 RRLGALRKXKEXI-DTKEIGEVSSIEAVFSNERGLELKKGNWRGEP 171
>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|B Chain B, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|C Chain C, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|D Chain D, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|E Chain E, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|F Chain F, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|G Chain G, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|H Chain H, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|I Chain I, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|J Chain J, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|K Chain K, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|L Chain L, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|M Chain M, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|N Chain N, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|O Chain O, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|P Chain P, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
Length = 370
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 9 IRFGIIGAADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
IRFG++G I++ AI A L + + E +A A+ + S
Sbjct: 31 IRFGLVGCGRISKNHIGAIAQHGDRAELVEICDTNPEAL----QAAEAATGARPFSSLSD 86
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
+L + DA+ L P+ +H AI VAQ +H++ EKPMA + ++ AC+E GV+L
Sbjct: 87 MLAQGNADALVLATPSGLHPWQAIEVAQAGRHVVSEKPMATRWEDGKRMVKACDEAGVRL 146
Query: 128 MDGTMWVHNPRTA--QMKEFVSDPQRFGQL 155
+ N R A Q+ + + RFG++
Sbjct: 147 F---VVKQNRRNATLQLVKKAIEQGRFGRI 173
>pdb|3EC7|A Chain A, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|B Chain B, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|C Chain C, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|D Chain D, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|E Chain E, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|F Chain F, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|G Chain G, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|H Chain H, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
Length = 357
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 17 ADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDID 75
+D R+L+ ++ + AV VA R+ A + + +AK Y Y L++DKD++
Sbjct: 36 SDHLRRLANTVSGVEVVAVCDIVAGRAQ------AALDKYAIEAKDYNDYHDLINDKDVE 89
Query: 76 AVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD-GTMWV 134
V + H A++ K++ EKP+A+ A+ ++ A ++NG + + G
Sbjct: 90 VVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRXVQIGFXRR 149
Query: 135 HNPRTAQMKEFVSDPQRFGQLRTMHS 160
++ Q+K + D GQ +H
Sbjct: 150 YDKGYVQLKNII-DSGEIGQPLXVHG 174
>pdb|3GFG|A Chain A, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|B Chain B, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|C Chain C, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|D Chain D, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|E Chain E, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|F Chain F, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|G Chain G, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|H Chain H, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|I Chain I, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|J Chain J, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|K Chain K, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|L Chain L, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
Length = 367
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 57 PDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVI 116
PDA+V E + +D I+ V + P+ +H + ++ Q KH++MEKPM E + +
Sbjct: 58 PDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETL 117
Query: 117 LNACEENGVQL 127
A +E GV L
Sbjct: 118 KRAADEKGVLL 128
>pdb|3GDO|A Chain A, Crystal Structure Of Putative Oxidoreductase Yvaa From
Bacillus Subtilis
pdb|3GDO|B Chain B, Crystal Structure Of Putative Oxidoreductase Yvaa From
Bacillus Subtilis
Length = 358
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 57 PDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVI 116
PDA+V E + +D I+ V + P+ +H + ++ Q KH++MEKPM E + +
Sbjct: 49 PDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETL 108
Query: 117 LNACEENGVQL 127
A +E GV L
Sbjct: 109 KRAADEKGVLL 119
>pdb|3E18|A Chain A, Crystal Structure Of Nad-Binding Protein From Listeria
Innocua
pdb|3E18|B Chain B, Crystal Structure Of Nad-Binding Protein From Listeria
Innocua
Length = 359
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 60 KVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNA 119
K+Y SYEA+L D+ +DAV + P H + AIS + KH++ EKP+ + + I++
Sbjct: 52 KIYESYEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDV 111
Query: 120 CEENGVQLMDGTMWVHNPR 138
+ M VH R
Sbjct: 112 AKRVNKHFM-----VHQNR 125
>pdb|4FB5|A Chain A, Crystal Structure Of A Probable Oxidoreduxtase Protein
pdb|4FB5|B Chain B, Crystal Structure Of A Probable Oxidoreduxtase Protein
Length = 393
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 4 ESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA---- 59
+S + G+IG + LA NAV + + + A+AN +A
Sbjct: 21 QSXKPLGIGLIGTG----YXGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE 76
Query: 60 ----KVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDV 115
K + AL+ D ++D V + P H + AI+ + KH+ EKP A A+ +
Sbjct: 77 FGFEKATADWRALIADPEVDVVSVTTPNQFHAEXAIAALEAGKHVWCEKPXAPAYADAER 136
Query: 116 ILNACEENGVQLMDGTMWVHNPRTAQMKEFVSD 148
L E +G G ++ NP +++ V D
Sbjct: 137 XLATAERSGKVAALGYNYIQNPVXRHIRKLVGD 169
>pdb|3EUW|A Chain A, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|B Chain B, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|C Chain C, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|D Chain D, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
Length = 344
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
+R + GA I + I P+ L +A +E A A+AN A+ S + +
Sbjct: 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANG----AEAVASPDEV 60
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
DID + + PTS HV ++ L EKP+ L++ + AC+E ++
Sbjct: 61 FARDDIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEX----VRACKE---KIG 113
Query: 129 DGTMWV 134
DG V
Sbjct: 114 DGASKV 119
>pdb|3E82|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|E Chain E, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
Length = 364
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
A I +G +G A L R++ P L+ VASR EK PD V S E
Sbjct: 11 ALIGYGFVGKTFHA-PLIRSV---PGLNLAFVASRDEEKVKRDL------PDVTVIASPE 60
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122
A + D+D V + P + H A KH++++KP L+ E ++ EE
Sbjct: 61 AAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDXQEARELIALAEE 116
>pdb|3C1A|A Chain A, Crystal Structure Of A Putative Oxidoreductase
(Zp_00056571.1) From Magnetospirillum Magnetotacticum
Ms-1 At 1.85 A Resolution
pdb|3C1A|B Chain B, Crystal Structure Of A Putative Oxidoreductase
(Zp_00056571.1) From Magnetospirillum Magnetotacticum
Ms-1 At 1.85 A Resolution
Length = 315
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
+ + +R +IGA + R I P A L +AS + + N A PP +
Sbjct: 7 NNSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPD---NLAL---VPPGCVIESD 60
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNV 110
+ +++ +++AV + P + H + ++ K +L+EKP+ L++
Sbjct: 61 WRSVVSAPEVEAVIIATPPATHAEITLAAIASGKAVLVEKPLTLDL 106
>pdb|2IXA|A Chain A, A-Zyme, N-Acetylgalactosaminidase
pdb|2IXB|A Chain A, Crystal Structure Of N-Acetylgalactosaminidase In Complex
With Galnac
Length = 444
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 45 KATNFAKANNFPPDAKVYGS----YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHL 100
+A K N P AKV+G+ Y+ +L DK+IDAV++ P H + ++ + K +
Sbjct: 60 RAQEILKKNGKKP-AKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKAGKIV 118
Query: 101 LMEKPMALNVAEFDVILNACEENGVQLM 128
ME A+ + E + E+ GV LM
Sbjct: 119 GMEVSGAITLEECWDYVKVSEQTGVPLM 146
>pdb|3NT2|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT2|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT4|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT4|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT5|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
pdb|3NT5|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
Length = 344
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Query: 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
++R G+IG I ++ ++R A + AV + E A + + +A VY + +
Sbjct: 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVE--QYQLNATVYPNDD 59
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126
+LL D+++DAV + H + + +K++ EKP+A I+ + G +
Sbjct: 60 SLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKR 119
Query: 127 LMD-GTMWVHNPRTAQMKEFVSDPQRFGQLRTMH 159
L+ G M ++ Q+KE + D G+ +H
Sbjct: 120 LVQVGFMRRYDSGYVQLKEAL-DNHVIGEPLMIH 152
>pdb|3MZ0|A Chain A, Crystal Structure Of Apo Myo-Inositol Dehydrogenase From
Bacillus Subtilis
Length = 344
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
++R G+IG I ++ ++R A + AV + E A + + +A VY + +
Sbjct: 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVE--QYQLNATVYPNDD 59
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMA 107
+LL D+++DAV + H + + +K++ EKP+A
Sbjct: 60 SLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLA 100
>pdb|4GQA|A Chain A, Crystal Structure Of Nad Binding Oxidoreductase From
Klebsiella Pneumoniae
pdb|4GQA|B Chain B, Crystal Structure Of Nad Binding Oxidoreductase From
Klebsiella Pneumoniae
pdb|4GQA|C Chain C, Crystal Structure Of Nad Binding Oxidoreductase From
Klebsiella Pneumoniae
pdb|4GQA|D Chain D, Crystal Structure Of Nad Binding Oxidoreductase From
Klebsiella Pneumoniae
Length = 412
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 60 KVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALN 109
K YG + L++D +D V + P +H A + KH+ EKP+A+N
Sbjct: 83 KAYGDWRELVNDPQVDVVDITSPNHLHYTXAXAAIAAGKHVYCEKPLAVN 132
>pdb|3CEA|A Chain A, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|B Chain B, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|C Chain C, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|D Chain D, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
Length = 346
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 9 IRFGIIGAADI----ARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
+R IIG + AR L I A+ S LE A N Y +
Sbjct: 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVET------TYTN 62
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFD 114
Y+ +D ++IDA+++ PT H + I ++ EKP+ L+ E D
Sbjct: 63 YKDXIDTENIDAIFIVAPTPFHPEXTIYAXNAGLNVFCEKPLGLDFNEVD 112
>pdb|3KUX|A Chain A, Structure Of The Ypo2259 Putative Oxidoreductase From
Yersinia Pestis
Length = 352
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 9 IRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
I+ G++G ++ + I P L+ V+S ++ +K + P V +
Sbjct: 8 IKVGLLGYGYASKTFHAPLIXGTPGLELAGVSS------SDASKVHADWPAIPVVSDPQX 61
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
L +D ID + +P P H A S KH++++KP + +++ + + ++ G+ L
Sbjct: 62 LFNDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLL 121
>pdb|3NTO|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis
pdb|3NTQ|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad
pdb|3NTQ|B Chain B, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad
pdb|3NTR|A Chain A, Crystal Structure Of K97v Mutant Of Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad And Inositol
pdb|3NTR|B Chain B, Crystal Structure Of K97v Mutant Of Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad And Inositol
Length = 344
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
++R G+IG I ++ ++R A + AV + E A + + +A VY + +
Sbjct: 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVE--QYQLNATVYPNDD 59
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126
+LL D+++DAV + H + + +K++ E P+A I+ + G +
Sbjct: 60 SLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEVPLATTAEGCMRIVEEEIKVGKR 119
Query: 127 LMD-GTMWVHNPRTAQMKEFVSDPQRFGQLRTMH 159
L+ G M ++ Q+KE + D G+ +H
Sbjct: 120 LVQVGFMRRYDSGYVQLKEAL-DNHVIGEPLMIH 152
>pdb|3FHL|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Bacteroides Fragilis Nctc 9343
pdb|3FHL|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Bacteroides Fragilis Nctc 9343
pdb|3FHL|C Chain C, Crystal Structure Of A Putative Oxidoreductase From
Bacteroides Fragilis Nctc 9343
pdb|3FHL|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
Bacteroides Fragilis Nctc 9343
Length = 362
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 27 ITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86
I+ P+ L + RS E + P A + S++ L +D +ID + + P + H
Sbjct: 25 ISTNPHFELYKIVERSKELSKERY------PQASIVRSFKELTEDPEIDLIVVNTPDNTH 78
Query: 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
++A + K++++EKP + + ++ ++ G+ L
Sbjct: 79 YEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLML 119
>pdb|3M2T|A Chain A, The Crystal Structure Of Dehydrogenase From
Chromobacterium Violaceum
pdb|3M2T|B Chain B, The Crystal Structure Of Dehydrogenase From
Chromobacterium Violaceum
Length = 359
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 5 SQAAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG 63
S + I+ G++G A L ++ + + A LE+A + + F D V
Sbjct: 2 SLSLIKVGLVGIGAQXQENLLPSLLQXQDIRIVAACDSDLERAR---RVHRFISDIPVLD 58
Query: 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123
+ A L+ +DAV P +H + + K ++ +EKP + E + +++A +
Sbjct: 59 NVPAXLNQVPLDAVVXAGPPQLHFEXGLLAXSKGVNVFVEKPPCATLEELETLIDAARRS 118
Query: 124 GV 125
V
Sbjct: 119 DV 120
>pdb|4EW6|A Chain A, Crystal Structure Of D-Galactose-1-Dehydrogenase Protein
From Rhizobium Etli
Length = 330
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 11/145 (7%)
Query: 4 ESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG 63
+S + I I+G I R ++A NA VA+ S + Y
Sbjct: 21 QSXSPINLAIVGVGKIVRD-QHLPSIAKNANFKLVATASRHGTVEGVNS---------YT 70
Query: 64 SYEALLD-DKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122
+ EA LD + IDAV L P + A KH+ +EKP ++E + +
Sbjct: 71 TIEAXLDAEPSIDAVSLCXPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANK 130
Query: 123 NGVQLMDGTMWVHNPRTAQMKEFVS 147
G L + P K F++
Sbjct: 131 QGASLFASWHSRYAPAVEAAKAFLA 155
>pdb|3HNP|A Chain A, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|B Chain B, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|C Chain C, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|D Chain D, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|E Chain E, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|F Chain F, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
Length = 353
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
+ LL+DK+I V + P H + A V K +++EKP V +L E GV
Sbjct: 58 DELLNDKEIQVVTICTPAHTHYELAKKVILAGKSVIVEKPFCDTVEHAKELLALGREKGV 117
Query: 126 QLM 128
+M
Sbjct: 118 VVM 120
>pdb|3Q2I|A Chain A, Crystal Structure Of The Wlba Dehydrognase From
Chromobactrium Violaceum In Complex With Nadh And
Udp-Glcnaca At 1.50 A Resolution
Length = 354
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 59 AKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILN 118
A+ + S +L D D V L P+ +H +I ++ H++ EKPMA + ++
Sbjct: 61 ARGHASLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVK 120
Query: 119 ACEENGVQLMDGTMWVHNPRTA--QMKEFVSDPQRFGQL 155
A ++ L + N R A Q+ + +RFG++
Sbjct: 121 AADKAKKHLF---VVKQNRRNATLQLLKRAMQEKRFGRI 156
>pdb|1LC0|A Chain A, Structure Of Biliverdin Reductase And The Enzyme-Nadh
Complex
pdb|1LC3|A Chain A, Crystal Structure Of A Biliverdin Reductase
Enzyme-Cofactor Complex
Length = 294
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVA 111
S E L ++ID Y+ +S H + Q KH+L+E PM L+ A
Sbjct: 56 SLEDALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFA 103
>pdb|1GCU|A Chain A, Crystal Structure Of Rat Biliverdin Reductase At 1.4 A
Length = 295
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVA 111
S E L ++ID Y+ +S H + Q KH+L+E PM L+ A
Sbjct: 57 SLEDALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFA 104
>pdb|1TLT|A Chain A, Crystal Structure Of A Putative Oxidoreductase (Virulence
Factor Mvim Homolog)
pdb|1TLT|B Chain B, Crystal Structure Of A Putative Oxidoreductase (Virulence
Factor Mvim Homolog)
Length = 319
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 19/129 (14%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-------PDAKV 61
+R G++G IA+K A VL+A + +L+ A + +A P P A
Sbjct: 6 LRIGVVGLGGIAQK-------AWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADS 58
Query: 62 YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACE 121
S A DAV++ T+ H ++ H+ ++KP+A N+ + + ++
Sbjct: 59 LSSLAA-----SCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAA 113
Query: 122 ENGVQLMDG 130
+ LM G
Sbjct: 114 RKKLTLMVG 122
>pdb|2H63|A Chain A, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
pdb|2H63|B Chain B, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
pdb|2H63|C Chain C, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
pdb|2H63|D Chain D, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
Length = 292
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123
S E L ++++ Y+ +S H + KH+L+E PM L++A + E+
Sbjct: 54 SLEDALSSQEVEVAYICSESSSHEDYIRQFLNAGKHVLVEYPMTLSLAAAQELWELAEQK 113
Query: 124 G 124
G
Sbjct: 114 G 114
>pdb|3O9Z|A Chain A, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3O9Z|B Chain B, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3O9Z|C Chain C, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3O9Z|D Chain D, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3OA0|A Chain A, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
pdb|3OA0|B Chain B, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
pdb|3OA0|C Chain C, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
pdb|3OA0|D Chain D, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
Length = 312
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 10 RFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG---SY 65
RF + G A IA + +AI + V SL+ ATN ++F P+A+ + ++
Sbjct: 5 RFALTGLAGYIAPRHLKAIK-----EVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAF 59
Query: 66 EALLDD-----KDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMAL 108
EA L+D + +D + + P +H + + L EKP+ L
Sbjct: 60 EAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVL 107
>pdb|3OQB|A Chain A, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|B Chain B, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|C Chain C, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|D Chain D, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|E Chain E, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|F Chain F, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|G Chain G, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|H Chain H, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
Length = 383
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 22/179 (12%)
Query: 1 MATESQAAIRFGIIGAADIARKLSRAIT---------------LAPNAVLSAVASRSLEK 45
+ T+ I G+ G + + L R+I + P+ +L RS EK
Sbjct: 2 LTTQRLGLIXNGVTGRXGLNQHLIRSIVAIRDQGGVRLKNGDRIXPDPIL---VGRSAEK 58
Query: 46 ATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKP 105
AK N A+ +A L DK+ + T KH+ EKP
Sbjct: 59 VEALAKRFNI---ARWTTDLDAALADKNDTXFFDAATTQARPGLLTQAINAGKHVYCEKP 115
Query: 106 MALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164
+A N E ++ GV+ + P ++ F+ D FG++ ++ F +
Sbjct: 116 IATNFEEALEVVKLANSKGVKHGTVQDKLFLPGLKKIA-FLRDSGFFGRILSVRGEFGY 173
>pdb|1WXR|A Chain A, Crystal Structure Of Heme Binding Protein, An
Autotransporter Hemoglobine Protease From Pathogenic
Escherichia Coli
Length = 1048
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 194 GIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLANMTMDI 253
G S+ + ++Y TV +G AG+++ G S++W V + + T+ +
Sbjct: 324 GAGSLTFRDNY----TVTTSNGSTWTGAGIVVDNGVSVNWQVNGVKGDNLHKIGEGTLTV 379
Query: 254 TATGTN-GSLQLHDFIIPFREE 274
TG N G L++ D + ++
Sbjct: 380 QGTGINEGGLKVGDGKVVLNQQ 401
>pdb|3AK5|A Chain A, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|B Chain B, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|C Chain C, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|D Chain D, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
Length = 975
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 194 GIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLANMTMDI 253
G S+ + ++Y TV +G AG+++ G S++W V + + T+ +
Sbjct: 324 GAGSLTFRDNY----TVTTSNGSTWTGAGIVVDNGVSVNWQVNGVKGDNLHKIGEGTLTV 379
Query: 254 TATGTN-GSLQLHDFIIPFREE 274
TG N G L++ D + ++
Sbjct: 380 QGTGINEGGLKVGDGKVVLNQQ 401
>pdb|4H3V|A Chain A, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
pdb|4H3V|B Chain B, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
Length = 390
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNV---AEFDVILNACE 121
+ LL+ D+ V + P H + AI+ + KH+L EKP+A V
Sbjct: 67 WRTLLERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAXAAAAAKAA 126
Query: 122 ENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCF 162
G++ G + P A ++ V+D + G +R + + +
Sbjct: 127 AGGIRSXVGFTYRRVPAIALARKLVAD-GKIGTVRHVRAQY 166
>pdb|3CF4|G Chain G, Structure Of The Codh Component Of The M. Barkeri Acds
Complex
Length = 170
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 43 LEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL 79
L++ +KA N P A GS A+L DKD+DA Y+
Sbjct: 51 LDRVVKISKAANIPIAAT--GSSLAVLADKDVDAKYI 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,191,882
Number of Sequences: 62578
Number of extensions: 394653
Number of successful extensions: 939
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 57
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)