Query 018020
Match_columns 362
No_of_seqs 139 out of 1945
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11579 putative oxidoreducta 100.0 3.7E-55 8.1E-60 410.3 38.3 335 7-361 3-346 (346)
2 COG0673 MviM Predicted dehydro 100.0 2.5E-53 5.4E-58 398.5 36.0 335 7-361 2-341 (342)
3 PRK10206 putative oxidoreducta 100.0 5.9E-52 1.3E-56 387.0 33.8 332 8-360 1-342 (344)
4 KOG2741 Dimeric dihydrodiol de 100.0 6.6E-50 1.4E-54 354.7 33.3 335 7-354 5-344 (351)
5 KOG2742 Predicted oxidoreducta 100.0 2.7E-32 5.9E-37 240.2 13.4 330 8-361 3-347 (367)
6 TIGR01761 thiaz-red thiazoliny 100.0 6.2E-29 1.3E-33 228.9 26.0 220 7-266 2-237 (343)
7 PF01408 GFO_IDH_MocA: Oxidore 100.0 4.2E-29 9.1E-34 198.5 14.5 119 9-131 1-120 (120)
8 PRK13302 putative L-aspartate 99.9 2.7E-22 5.9E-27 180.6 16.6 225 6-265 4-237 (271)
9 PRK13303 L-aspartate dehydroge 99.8 1.1E-20 2.3E-25 169.9 11.8 226 8-265 1-232 (265)
10 PRK08300 acetaldehyde dehydrog 99.8 6.3E-19 1.4E-23 158.3 18.5 140 6-156 2-153 (302)
11 PLN02819 lysine-ketoglutarate 99.8 2.4E-19 5.1E-24 184.3 17.5 175 7-188 568-761 (1042)
12 TIGR03215 ac_ald_DH_ac acetald 99.8 1.5E-19 3.2E-24 162.0 13.5 139 8-157 1-148 (285)
13 PRK13304 L-aspartate dehydroge 99.8 4.4E-19 9.6E-24 159.6 15.8 142 9-163 2-145 (265)
14 TIGR03855 NAD_NadX aspartate d 99.8 7.2E-19 1.6E-23 153.4 15.4 120 32-163 1-121 (229)
15 PRK06349 homoserine dehydrogen 99.8 4.6E-19 1E-23 169.7 13.1 145 7-158 2-157 (426)
16 PRK06270 homoserine dehydrogen 99.8 3.4E-18 7.4E-23 159.2 15.8 148 8-159 2-179 (341)
17 PRK00048 dihydrodipicolinate r 99.8 2.8E-18 6E-23 153.7 11.7 143 8-161 1-146 (257)
18 TIGR01921 DAP-DH diaminopimela 99.7 1.4E-16 3.1E-21 144.5 16.1 187 7-214 2-193 (324)
19 TIGR00036 dapB dihydrodipicoli 99.7 2.1E-16 4.5E-21 142.1 13.2 123 9-134 2-128 (266)
20 PRK05447 1-deoxy-D-xylulose 5- 99.7 9.2E-15 2E-19 135.0 20.9 211 9-238 2-255 (385)
21 PF02894 GFO_IDH_MocA_C: Oxido 99.3 5.6E-12 1.2E-16 98.4 7.1 110 143-255 1-114 (115)
22 PF08635 ox_reductase_C: Putat 99.3 1.5E-11 3.2E-16 94.0 8.8 120 134-258 1-140 (142)
23 PRK05472 redox-sensing transcr 99.2 6.9E-12 1.5E-16 109.4 4.8 102 7-112 83-186 (213)
24 PRK04207 glyceraldehyde-3-phos 99.2 1.5E-10 3.3E-15 107.8 12.2 97 8-106 1-111 (341)
25 COG1712 Predicted dinucleotide 99.2 6.3E-10 1.4E-14 94.0 13.2 140 9-161 1-142 (255)
26 COG4693 PchG Oxidoreductase (N 99.2 7.9E-10 1.7E-14 95.9 13.3 129 9-146 5-138 (361)
27 PRK13301 putative L-aspartate 99.1 1.6E-09 3.5E-14 95.3 13.9 119 8-133 2-123 (267)
28 PF01113 DapB_N: Dihydrodipico 99.1 3.2E-10 7E-15 90.0 8.0 117 9-130 1-121 (124)
29 PRK08374 homoserine dehydrogen 99.1 2.8E-09 6E-14 99.1 14.8 150 8-164 2-178 (336)
30 PRK08618 ornithine cyclodeamin 99.0 5.3E-10 1.1E-14 103.8 8.1 124 8-138 127-268 (325)
31 PRK07634 pyrroline-5-carboxyla 99.0 1.1E-08 2.4E-13 91.3 15.0 105 6-117 2-111 (245)
32 COG1748 LYS9 Saccharopine dehy 99.0 7.1E-09 1.5E-13 96.7 13.2 150 8-166 1-156 (389)
33 PRK00436 argC N-acetyl-gamma-g 99.0 1.4E-09 3.1E-14 101.6 8.4 93 8-102 2-97 (343)
34 PF03446 NAD_binding_2: NAD bi 99.0 9.3E-09 2E-13 85.8 12.0 115 8-132 1-120 (163)
35 PF03447 NAD_binding_3: Homose 99.0 2.9E-09 6.4E-14 83.7 8.4 110 15-129 1-116 (117)
36 PF03807 F420_oxidored: NADP o 99.0 7.8E-09 1.7E-13 78.2 10.2 86 10-101 1-91 (96)
37 COG4091 Predicted homoserine d 98.9 1.1E-08 2.4E-13 91.7 10.1 124 6-130 15-158 (438)
38 COG0460 ThrA Homoserine dehydr 98.9 5.5E-08 1.2E-12 88.6 13.6 148 6-164 1-169 (333)
39 TIGR01546 GAPDH-II_archae glyc 98.8 4.3E-08 9.4E-13 90.0 11.0 93 11-105 1-108 (333)
40 PRK06476 pyrroline-5-carboxyla 98.8 1E-07 2.2E-12 85.8 12.9 134 9-158 1-149 (258)
41 cd01065 NAD_bind_Shikimate_DH 98.7 4.5E-08 9.8E-13 80.9 8.3 125 8-139 19-147 (155)
42 COG0289 DapB Dihydrodipicolina 98.7 1.3E-07 2.9E-12 82.6 11.4 150 8-163 2-157 (266)
43 PF03435 Saccharop_dh: Sacchar 98.7 2.6E-07 5.6E-12 88.2 13.6 148 11-165 1-157 (386)
44 smart00859 Semialdhyde_dh Semi 98.7 5E-08 1.1E-12 77.3 7.3 90 10-101 1-96 (122)
45 TIGR01850 argC N-acetyl-gamma- 98.7 7.3E-08 1.6E-12 90.2 9.3 92 9-102 1-97 (346)
46 PRK12490 6-phosphogluconate de 98.7 5.1E-07 1.1E-11 83.1 14.4 112 9-128 1-116 (299)
47 COG2084 MmsB 3-hydroxyisobutyr 98.7 3.2E-07 7E-12 82.4 12.4 111 9-129 1-118 (286)
48 PRK06392 homoserine dehydrogen 98.7 8.4E-07 1.8E-11 81.9 15.3 146 9-164 1-172 (326)
49 PRK06046 alanine dehydrogenase 98.6 8.6E-08 1.9E-12 89.1 8.4 103 7-117 128-233 (326)
50 PRK09599 6-phosphogluconate de 98.6 1.1E-06 2.4E-11 80.9 14.5 112 9-129 1-117 (301)
51 PRK07679 pyrroline-5-carboxyla 98.6 1.4E-06 3E-11 79.4 14.8 103 8-117 3-111 (279)
52 KOG0409 Predicted dehydrogenas 98.6 6.5E-07 1.4E-11 79.3 11.9 114 7-130 34-154 (327)
53 PF10727 Rossmann-like: Rossma 98.6 7.9E-08 1.7E-12 76.0 5.6 110 7-128 9-123 (127)
54 PF01118 Semialdhyde_dh: Semia 98.6 6.9E-08 1.5E-12 76.4 4.7 89 10-101 1-94 (121)
55 COG0345 ProC Pyrroline-5-carbo 98.6 2.7E-06 5.9E-11 75.7 15.1 104 8-118 1-108 (266)
56 PRK11880 pyrroline-5-carboxyla 98.5 2.4E-06 5.2E-11 77.3 14.2 100 8-114 2-103 (267)
57 PRK11559 garR tartronate semia 98.5 1.6E-06 3.4E-11 79.8 12.9 110 9-129 3-119 (296)
58 TIGR00872 gnd_rel 6-phosphoglu 98.5 1.9E-06 4E-11 79.3 13.3 112 9-129 1-116 (298)
59 PLN02350 phosphogluconate dehy 98.5 2.9E-06 6.2E-11 82.5 15.0 117 7-128 5-129 (493)
60 COG3804 Uncharacterized conser 98.5 3.4E-06 7.5E-11 73.7 13.6 148 9-162 3-159 (350)
61 PRK07680 late competence prote 98.5 6E-06 1.3E-10 75.0 15.3 101 9-116 1-107 (273)
62 PRK12491 pyrroline-5-carboxyla 98.5 2E-06 4.3E-11 77.8 11.8 102 9-117 3-109 (272)
63 TIGR02371 ala_DH_arch alanine 98.5 6.6E-07 1.4E-11 83.1 8.9 102 7-117 127-232 (325)
64 PF02629 CoA_binding: CoA bind 98.5 6.5E-08 1.4E-12 73.1 1.8 90 7-102 2-92 (96)
65 PLN02696 1-deoxy-D-xylulose-5- 98.4 2.6E-05 5.7E-10 73.9 19.2 211 8-238 57-313 (454)
66 PRK15461 NADH-dependent gamma- 98.4 4.4E-06 9.4E-11 76.7 13.6 110 10-130 3-119 (296)
67 PRK06813 homoserine dehydrogen 98.4 5.8E-06 1.2E-10 76.9 14.3 150 8-164 2-178 (346)
68 PLN02700 homoserine dehydrogen 98.4 1.1E-05 2.4E-10 75.4 16.1 152 6-164 1-196 (377)
69 PRK08291 ectoine utilization p 98.4 7.5E-07 1.6E-11 83.0 8.0 114 8-130 132-250 (330)
70 PLN02775 Probable dihydrodipic 98.4 3.3E-06 7.1E-11 75.6 10.7 119 7-133 10-136 (286)
71 TIGR00873 gnd 6-phosphoglucona 98.4 1E-05 2.3E-10 78.5 14.6 115 10-128 1-120 (467)
72 TIGR01505 tartro_sem_red 2-hyd 98.3 6.7E-06 1.5E-10 75.4 12.3 109 10-129 1-116 (291)
73 PRK06928 pyrroline-5-carboxyla 98.3 5.1E-06 1.1E-10 75.5 11.1 103 9-117 2-110 (277)
74 PRK07340 ornithine cyclodeamin 98.3 1.2E-06 2.7E-11 80.5 7.1 103 7-117 124-227 (304)
75 PRK14618 NAD(P)H-dependent gly 98.3 5.6E-06 1.2E-10 77.2 11.1 110 8-122 4-123 (328)
76 PTZ00142 6-phosphogluconate de 98.3 1.9E-05 4E-10 76.7 14.6 115 9-127 2-122 (470)
77 KOG0455 Homoserine dehydrogena 98.3 2.7E-05 5.8E-10 67.2 13.5 150 6-164 1-178 (364)
78 PRK15059 tartronate semialdehy 98.3 1.6E-05 3.4E-10 72.8 13.0 110 9-130 1-117 (292)
79 PRK06141 ornithine cyclodeamin 98.3 3.3E-06 7.1E-11 78.1 8.5 115 7-127 124-239 (314)
80 TIGR01532 E4PD_g-proteo D-eryt 98.3 5.1E-06 1.1E-10 76.6 9.6 99 10-108 1-125 (325)
81 PF01210 NAD_Gly3P_dh_N: NAD-d 98.3 8.6E-06 1.9E-10 67.5 10.1 88 10-101 1-100 (157)
82 COG2344 AT-rich DNA-binding pr 98.3 1.1E-06 2.3E-11 72.5 4.4 102 6-111 82-185 (211)
83 PRK09436 thrA bifunctional asp 98.2 2.1E-05 4.6E-10 81.7 14.8 155 7-164 464-638 (819)
84 TIGR01692 HIBADH 3-hydroxyisob 98.2 2.3E-05 5E-10 71.7 12.9 106 13-129 1-113 (288)
85 PLN02256 arogenate dehydrogena 98.2 2.5E-05 5.3E-10 71.8 12.9 79 6-93 34-112 (304)
86 PLN02712 arogenate dehydrogena 98.2 2.4E-05 5.1E-10 79.3 13.6 89 6-103 367-458 (667)
87 TIGR02992 ectoine_eutC ectoine 98.2 6E-06 1.3E-10 76.8 8.7 102 8-117 129-234 (326)
88 PRK07502 cyclohexadienyl dehyd 98.2 3.3E-05 7.2E-10 71.3 13.3 82 8-94 6-87 (307)
89 TIGR02130 dapB_plant dihydrodi 98.2 2.4E-05 5.3E-10 69.7 11.6 116 9-133 1-125 (275)
90 TIGR00978 asd_EA aspartate-sem 98.2 5E-06 1.1E-10 77.8 7.4 92 9-102 1-102 (341)
91 PRK09466 metL bifunctional asp 98.2 4.2E-05 9.2E-10 79.0 14.7 155 6-164 456-632 (810)
92 PLN02688 pyrroline-5-carboxyla 98.1 2.9E-05 6.2E-10 70.2 11.8 77 9-92 1-80 (266)
93 COG1023 Gnd Predicted 6-phosph 98.1 8.5E-05 1.8E-09 63.9 13.3 111 9-128 1-116 (300)
94 TIGR03026 NDP-sugDHase nucleot 98.1 1.3E-05 2.8E-10 77.2 9.5 74 9-86 1-89 (411)
95 PLN02858 fructose-bisphosphate 98.1 3.5E-05 7.6E-10 83.9 13.3 109 7-126 323-440 (1378)
96 cd05213 NAD_bind_Glutamyl_tRNA 98.1 2.1E-05 4.5E-10 72.7 10.0 92 8-104 178-272 (311)
97 COG0743 Dxr 1-deoxy-D-xylulose 98.1 0.00061 1.3E-08 62.4 18.7 214 9-238 2-253 (385)
98 PF03721 UDPG_MGDP_dh_N: UDP-g 98.1 1.5E-05 3.4E-10 67.7 8.1 110 9-123 1-141 (185)
99 PRK08507 prephenate dehydrogen 98.1 7.4E-05 1.6E-09 67.9 13.1 96 9-115 1-99 (275)
100 PF01488 Shikimate_DH: Shikima 98.1 1E-05 2.2E-10 65.2 6.2 94 7-104 11-108 (135)
101 PRK11064 wecC UDP-N-acetyl-D-m 98.0 5.9E-05 1.3E-09 72.5 12.3 71 8-84 3-86 (415)
102 COG0002 ArgC Acetylglutamate s 98.0 2.4E-05 5.1E-10 71.4 8.7 92 8-101 2-98 (349)
103 PLN02858 fructose-bisphosphate 98.0 9.2E-05 2E-09 80.7 14.5 106 8-124 4-116 (1378)
104 PLN02358 glyceraldehyde-3-phos 98.0 4.2E-05 9.1E-10 70.8 10.0 99 7-105 4-128 (338)
105 PRK08655 prephenate dehydrogen 98.0 0.0001 2.3E-09 71.2 13.1 87 9-103 1-90 (437)
106 PLN02712 arogenate dehydrogena 98.0 8E-05 1.7E-09 75.6 12.5 88 7-103 51-141 (667)
107 PRK15182 Vi polysaccharide bio 98.0 8.5E-05 1.8E-09 71.5 12.1 72 7-86 5-89 (425)
108 smart00846 Gp_dh_N Glyceraldeh 98.0 0.00011 2.5E-09 59.9 11.0 98 9-106 1-121 (149)
109 TIGR00243 Dxr 1-deoxy-D-xylulo 97.9 0.0025 5.4E-08 59.5 20.5 209 9-238 2-258 (389)
110 PRK05479 ketol-acid reductoiso 97.9 4.9E-05 1.1E-09 70.1 9.2 75 7-90 16-90 (330)
111 PF13380 CoA_binding_2: CoA bi 97.9 4.4E-05 9.4E-10 59.7 7.6 100 10-128 2-106 (116)
112 PRK06407 ornithine cyclodeamin 97.9 3.6E-05 7.9E-10 70.6 8.3 117 8-130 117-235 (301)
113 PRK07417 arogenate dehydrogena 97.9 7.9E-05 1.7E-09 67.8 10.3 87 9-103 1-89 (279)
114 PF02670 DXP_reductoisom: 1-de 97.9 0.00021 4.5E-09 56.5 10.9 92 11-102 1-119 (129)
115 PRK06823 ornithine cyclodeamin 97.9 6.3E-05 1.4E-09 69.4 9.0 114 8-130 128-245 (315)
116 PRK00094 gpsA NAD(P)H-dependen 97.9 9.8E-05 2.1E-09 68.7 10.3 78 9-90 2-88 (325)
117 TIGR00465 ilvC ketol-acid redu 97.8 0.00012 2.6E-09 67.4 9.8 76 8-92 3-78 (314)
118 PF07991 IlvN: Acetohydroxy ac 97.8 7.4E-05 1.6E-09 60.9 7.1 90 8-106 4-97 (165)
119 PRK12464 1-deoxy-D-xylulose 5- 97.8 0.004 8.7E-08 58.1 19.2 205 13-238 1-250 (383)
120 PRK15057 UDP-glucose 6-dehydro 97.8 0.00022 4.8E-09 67.8 11.2 71 9-84 1-84 (388)
121 TIGR01851 argC_other N-acetyl- 97.8 0.00012 2.5E-09 66.7 8.8 75 9-101 2-77 (310)
122 PRK00258 aroE shikimate 5-dehy 97.8 8.2E-05 1.8E-09 67.7 7.9 126 8-140 123-253 (278)
123 cd01075 NAD_bind_Leu_Phe_Val_D 97.8 0.00055 1.2E-08 59.0 12.6 109 7-129 27-137 (200)
124 TIGR02853 spore_dpaA dipicolin 97.8 9.5E-05 2.1E-09 67.4 8.0 117 8-139 151-272 (287)
125 PRK11863 N-acetyl-gamma-glutam 97.8 8.5E-05 1.8E-09 68.0 7.6 76 8-101 2-78 (313)
126 TIGR01809 Shik-DH-AROM shikima 97.8 0.00016 3.6E-09 65.8 9.5 130 8-141 125-264 (282)
127 PRK07589 ornithine cyclodeamin 97.8 9.8E-05 2.1E-09 68.8 8.1 104 8-116 129-234 (346)
128 PF00044 Gp_dh_N: Glyceraldehy 97.7 0.00013 2.9E-09 59.5 7.8 99 9-108 1-124 (151)
129 TIGR01019 sucCoAalpha succinyl 97.7 0.0004 8.6E-09 63.0 11.5 121 7-137 5-128 (286)
130 PTZ00431 pyrroline carboxylate 97.7 0.00017 3.8E-09 64.9 9.2 95 8-117 3-102 (260)
131 PRK14620 NAD(P)H-dependent gly 97.7 0.00025 5.4E-09 66.1 10.4 95 9-106 1-109 (326)
132 PRK05678 succinyl-CoA syntheta 97.7 0.00039 8.4E-09 63.2 11.1 116 1-128 1-120 (291)
133 PRK13403 ketol-acid reductoiso 97.7 0.00022 4.7E-09 65.1 9.4 73 8-90 16-88 (335)
134 TIGR01915 npdG NADPH-dependent 97.7 0.00032 6.8E-09 61.5 10.2 95 9-108 1-106 (219)
135 PRK05722 glucose-6-phosphate 1 97.7 0.00049 1.1E-08 67.0 12.3 119 5-123 6-174 (495)
136 COG0373 HemA Glutamyl-tRNA red 97.7 0.00028 6.1E-09 66.6 10.3 92 7-103 177-272 (414)
137 COG2085 Predicted dinucleotide 97.7 0.00038 8.3E-09 59.3 9.8 82 8-95 1-82 (211)
138 COG1064 AdhP Zn-dependent alco 97.7 0.0014 3.1E-08 60.3 14.3 130 9-146 168-325 (339)
139 PTZ00187 succinyl-CoA syntheta 97.7 0.00038 8.3E-09 63.6 10.4 122 7-138 28-155 (317)
140 PRK09260 3-hydroxybutyryl-CoA 97.7 0.00046 1E-08 63.1 11.1 74 10-87 3-95 (288)
141 COG1004 Ugd Predicted UDP-gluc 97.7 0.00071 1.5E-08 62.9 12.0 92 9-105 1-120 (414)
142 PRK12549 shikimate 5-dehydroge 97.7 0.00013 2.8E-09 66.5 7.1 120 9-135 128-254 (284)
143 COG2423 Predicted ornithine cy 97.6 0.00025 5.5E-09 65.3 8.9 110 9-124 131-242 (330)
144 COG0240 GpsA Glycerol-3-phosph 97.6 0.00055 1.2E-08 62.5 10.9 98 8-109 1-111 (329)
145 PF02423 OCD_Mu_crystall: Orni 97.6 7.1E-05 1.5E-09 69.2 5.1 106 8-118 128-235 (313)
146 PRK06199 ornithine cyclodeamin 97.6 0.00019 4.1E-09 67.9 8.0 93 8-102 155-257 (379)
147 PRK08664 aspartate-semialdehyd 97.6 0.00019 4.1E-09 67.4 7.9 92 8-102 3-105 (349)
148 PLN02353 probable UDP-glucose 97.6 0.001 2.2E-08 64.8 13.0 72 8-83 1-88 (473)
149 TIGR00507 aroE shikimate 5-deh 97.6 0.00024 5.2E-09 64.3 8.2 126 9-142 118-248 (270)
150 PRK06129 3-hydroxyacyl-CoA deh 97.6 0.00062 1.3E-08 62.9 11.0 114 9-128 3-138 (308)
151 PRK07531 bifunctional 3-hydrox 97.6 0.00053 1.1E-08 67.6 10.9 74 9-86 5-93 (495)
152 PLN00125 Succinyl-CoA ligase [ 97.6 0.00061 1.3E-08 62.1 10.2 122 7-138 11-136 (300)
153 KOG0172 Lysine-ketoglutarate r 97.6 0.00047 1E-08 63.5 9.2 155 8-169 2-162 (445)
154 PRK06130 3-hydroxybutyryl-CoA 97.5 0.0015 3.3E-08 60.4 12.9 75 8-86 4-92 (311)
155 COG0677 WecC UDP-N-acetyl-D-ma 97.5 0.0009 2E-08 62.1 10.9 124 8-138 9-162 (436)
156 PRK05671 aspartate-semialdehyd 97.5 0.00019 4.1E-09 66.8 6.5 88 7-101 3-94 (336)
157 PRK08293 3-hydroxybutyryl-CoA 97.5 0.0018 4E-08 59.1 12.9 74 8-85 3-96 (287)
158 PRK12550 shikimate 5-dehydroge 97.5 0.0004 8.7E-09 62.7 8.4 114 10-136 124-244 (272)
159 COG0057 GapA Glyceraldehyde-3- 97.5 0.00087 1.9E-08 60.9 10.3 101 8-108 1-126 (335)
160 PRK08040 putative semialdehyde 97.5 0.00023 4.9E-09 66.1 6.7 89 7-101 3-94 (336)
161 PRK12439 NAD(P)H-dependent gly 97.5 0.00067 1.5E-08 63.6 9.6 98 6-108 5-116 (341)
162 TIGR02717 AcCoA-syn-alpha acet 97.5 0.00083 1.8E-08 65.3 10.5 108 7-128 6-125 (447)
163 PRK07066 3-hydroxybutyryl-CoA 97.5 0.0017 3.7E-08 60.0 12.0 75 8-86 7-96 (321)
164 PRK09310 aroDE bifunctional 3- 97.5 0.00083 1.8E-08 65.7 10.4 112 8-135 332-443 (477)
165 KOG2380 Prephenate dehydrogena 97.5 0.00042 9E-09 62.7 7.4 71 7-86 51-121 (480)
166 PF02826 2-Hacid_dh_C: D-isome 97.4 0.00034 7.3E-09 59.2 6.5 67 8-84 36-102 (178)
167 PRK07530 3-hydroxybutyryl-CoA 97.4 0.0025 5.3E-08 58.5 12.0 74 8-86 4-96 (292)
168 COG0074 SucD Succinyl-CoA synt 97.4 0.00071 1.5E-08 59.8 7.9 118 1-128 1-120 (293)
169 PRK05808 3-hydroxybutyryl-CoA 97.4 0.0024 5.3E-08 58.2 11.8 80 9-93 4-104 (282)
170 TIGR00871 zwf glucose-6-phosph 97.4 0.0002 4.4E-09 69.3 4.9 50 74-123 110-165 (482)
171 PRK06522 2-dehydropantoate 2-r 97.4 0.0015 3.3E-08 60.1 10.6 80 9-94 1-87 (304)
172 PRK08306 dipicolinate synthase 97.4 0.00067 1.4E-08 62.2 8.0 115 8-137 152-271 (296)
173 PRK06545 prephenate dehydrogen 97.4 0.0038 8.2E-08 59.0 13.1 79 10-94 2-81 (359)
174 PRK07819 3-hydroxybutyryl-CoA 97.4 0.0024 5.3E-08 58.3 11.4 78 9-91 6-102 (286)
175 PRK07574 formate dehydrogenase 97.4 0.0018 4E-08 61.3 10.9 71 8-87 192-262 (385)
176 COG0169 AroE Shikimate 5-dehyd 97.4 0.00092 2E-08 60.4 8.5 118 9-131 127-249 (283)
177 PLN00203 glutamyl-tRNA reducta 97.4 0.0014 2.9E-08 64.6 10.3 84 8-94 266-353 (519)
178 TIGR03376 glycerol3P_DH glycer 97.3 0.0012 2.7E-08 61.5 9.5 96 10-108 1-121 (342)
179 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0024 5.3E-08 55.6 10.8 114 7-128 22-147 (217)
180 PRK13940 glutamyl-tRNA reducta 97.3 0.00066 1.4E-08 65.0 7.8 72 8-84 181-253 (414)
181 PRK00045 hemA glutamyl-tRNA re 97.3 0.0015 3.3E-08 63.1 10.3 83 8-95 182-267 (423)
182 PRK14806 bifunctional cyclohex 97.3 0.003 6.6E-08 65.5 13.2 117 9-132 4-123 (735)
183 PLN02272 glyceraldehyde-3-phos 97.3 0.0017 3.8E-08 61.5 10.2 98 8-105 85-207 (421)
184 cd01076 NAD_bind_1_Glu_DH NAD( 97.3 0.0017 3.7E-08 57.0 9.6 114 7-130 30-158 (227)
185 COG4569 MhpF Acetaldehyde dehy 97.3 0.0012 2.6E-08 55.3 8.1 98 7-107 3-105 (310)
186 PLN02968 Probable N-acetyl-gam 97.3 0.00082 1.8E-08 63.7 7.4 91 7-101 37-131 (381)
187 PRK14027 quinate/shikimate deh 97.3 0.0012 2.6E-08 60.0 8.2 120 9-135 128-256 (283)
188 PRK14619 NAD(P)H-dependent gly 97.2 0.00094 2E-08 61.7 7.5 64 8-93 4-67 (308)
189 PRK09287 6-phosphogluconate de 97.2 0.0065 1.4E-07 59.0 13.2 105 19-127 1-110 (459)
190 TIGR01035 hemA glutamyl-tRNA r 97.2 0.002 4.4E-08 62.1 9.5 92 8-104 180-276 (417)
191 PTZ00345 glycerol-3-phosphate 97.2 0.0016 3.5E-08 61.2 8.6 99 7-108 10-134 (365)
192 PRK08818 prephenate dehydrogen 97.2 0.0037 8.1E-08 58.8 10.9 69 8-95 4-73 (370)
193 COG1063 Tdh Threonine dehydrog 97.2 0.0047 1E-07 58.2 11.6 136 10-153 171-315 (350)
194 PRK08605 D-lactate dehydrogena 97.2 0.0029 6.3E-08 59.0 10.1 69 8-87 146-214 (332)
195 COG0287 TyrA Prephenate dehydr 97.2 0.0053 1.2E-07 55.6 11.3 83 8-94 3-85 (279)
196 PLN03139 formate dehydrogenase 97.1 0.0016 3.4E-08 61.7 7.9 70 8-86 199-268 (386)
197 PRK12480 D-lactate dehydrogena 97.1 0.003 6.6E-08 58.8 9.4 66 8-86 146-211 (330)
198 PLN02383 aspartate semialdehyd 97.1 0.00099 2.1E-08 62.3 6.1 88 7-101 6-97 (344)
199 PRK06035 3-hydroxyacyl-CoA deh 97.1 0.0053 1.1E-07 56.2 10.8 72 9-85 4-97 (291)
200 PRK12921 2-dehydropantoate 2-r 97.1 0.0024 5.3E-08 58.8 8.6 80 9-94 1-89 (305)
201 COG0059 IlvC Ketol-acid reduct 97.1 0.0023 5E-08 57.3 7.6 77 8-93 18-94 (338)
202 PRK06728 aspartate-semialdehyd 97.1 0.0016 3.5E-08 60.6 7.0 87 7-101 4-96 (347)
203 PRK13243 glyoxylate reductase; 97.0 0.0017 3.7E-08 60.6 7.1 67 8-85 150-216 (333)
204 cd05311 NAD_bind_2_malic_enz N 97.0 0.004 8.8E-08 54.7 8.7 113 7-130 24-150 (226)
205 COG0362 Gnd 6-phosphogluconate 97.0 0.011 2.5E-07 54.8 11.7 115 8-126 3-122 (473)
206 PRK12749 quinate/shikimate deh 97.0 0.0045 9.8E-08 56.5 9.1 128 9-141 125-266 (288)
207 PRK14874 aspartate-semialdehyd 97.0 0.0019 4E-08 60.4 6.7 86 9-101 2-91 (334)
208 PRK09880 L-idonate 5-dehydroge 97.0 0.037 8E-07 51.8 15.6 130 9-153 171-309 (343)
209 COG0569 TrkA K+ transport syst 96.9 0.0051 1.1E-07 54.0 8.7 91 9-102 1-98 (225)
210 cd05297 GH4_alpha_glucosidase_ 96.9 0.0043 9.3E-08 59.9 8.9 86 9-97 1-101 (423)
211 COG0111 SerA Phosphoglycerate 96.9 0.0028 6.1E-08 58.7 6.8 111 9-153 143-253 (324)
212 PRK07729 glyceraldehyde-3-phos 96.8 0.0099 2.1E-07 55.1 10.2 98 8-105 2-122 (343)
213 PLN02545 3-hydroxybutyryl-CoA 96.8 0.017 3.6E-07 53.0 11.7 73 9-86 5-96 (295)
214 cd01487 E1_ThiF_like E1_ThiF_l 96.8 0.008 1.7E-07 50.6 8.6 33 10-43 1-33 (174)
215 PF02844 GARS_N: Phosphoribosy 96.8 0.00059 1.3E-08 51.2 1.5 87 9-101 1-90 (100)
216 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.8 0.0097 2.1E-07 58.7 10.2 76 9-89 6-100 (503)
217 COG0136 Asd Aspartate-semialde 96.8 0.012 2.7E-07 53.9 10.1 144 8-156 1-155 (334)
218 PRK13535 erythrose 4-phosphate 96.7 0.012 2.5E-07 54.7 9.8 99 9-107 2-126 (336)
219 PF02737 3HCDH_N: 3-hydroxyacy 96.7 0.0037 8.1E-08 52.9 5.9 71 10-85 1-90 (180)
220 COG1810 Uncharacterized protei 96.7 0.028 6E-07 48.0 10.9 106 8-128 1-110 (224)
221 COG3268 Uncharacterized conser 96.7 0.032 7E-07 50.8 11.8 142 8-160 6-163 (382)
222 PRK03369 murD UDP-N-acetylmura 96.7 0.015 3.3E-07 57.2 10.9 88 9-103 13-100 (488)
223 PRK05476 S-adenosyl-L-homocyst 96.7 0.01 2.2E-07 56.9 9.1 83 8-100 212-295 (425)
224 PRK08268 3-hydroxy-acyl-CoA de 96.7 0.037 8E-07 54.7 13.4 78 9-91 8-104 (507)
225 PRK12548 shikimate 5-dehydroge 96.7 0.0058 1.3E-07 55.9 7.2 127 9-142 127-270 (289)
226 PRK05225 ketol-acid reductoiso 96.6 0.0042 9.1E-08 59.2 6.3 82 8-98 36-125 (487)
227 PLN02520 bifunctional 3-dehydr 96.6 0.0081 1.8E-07 59.6 8.5 122 8-138 379-505 (529)
228 TIGR01724 hmd_rel H2-forming N 96.6 0.027 5.9E-07 51.3 11.0 101 9-119 1-129 (341)
229 PRK15425 gapA glyceraldehyde-3 96.6 0.019 4.1E-07 53.1 10.2 98 8-105 2-122 (331)
230 PRK07403 glyceraldehyde-3-phos 96.6 0.013 2.8E-07 54.3 9.0 98 8-105 1-123 (337)
231 PRK08955 glyceraldehyde-3-phos 96.6 0.019 4E-07 53.3 10.0 97 8-105 2-121 (334)
232 PLN03096 glyceraldehyde-3-phos 96.6 0.015 3.3E-07 54.8 9.5 98 8-105 60-183 (395)
233 PRK15438 erythronate-4-phospha 96.6 0.004 8.7E-08 58.7 5.6 62 8-83 116-177 (378)
234 PTZ00023 glyceraldehyde-3-phos 96.5 0.019 4.2E-07 53.2 9.7 98 9-106 3-124 (337)
235 TIGR02356 adenyl_thiF thiazole 96.5 0.015 3.3E-07 50.1 8.5 36 7-43 20-55 (202)
236 PRK15409 bifunctional glyoxyla 96.5 0.0077 1.7E-07 55.9 7.0 66 8-84 145-211 (323)
237 PF02254 TrkA_N: TrkA-N domain 96.5 0.024 5.2E-07 43.9 8.9 97 11-116 1-105 (116)
238 PRK15469 ghrA bifunctional gly 96.5 0.005 1.1E-07 56.9 5.7 68 8-86 136-203 (312)
239 COG1052 LdhA Lactate dehydroge 96.5 0.0074 1.6E-07 55.9 6.8 66 8-84 146-211 (324)
240 PF05368 NmrA: NmrA-like famil 96.5 0.021 4.5E-07 50.3 9.4 96 11-129 1-99 (233)
241 PRK06436 glycerate dehydrogena 96.5 0.0078 1.7E-07 55.3 6.8 64 8-85 122-185 (303)
242 PRK11199 tyrA bifunctional cho 96.5 0.02 4.4E-07 54.3 9.8 75 7-103 97-173 (374)
243 PRK00257 erythronate-4-phospha 96.5 0.005 1.1E-07 58.3 5.6 62 8-83 116-177 (381)
244 PRK06249 2-dehydropantoate 2-r 96.4 0.01 2.3E-07 54.9 7.6 79 6-92 3-91 (313)
245 PRK00683 murD UDP-N-acetylmura 96.4 0.014 3E-07 56.4 8.7 88 7-103 2-89 (418)
246 TIGR01470 cysG_Nterm siroheme 96.4 0.025 5.5E-07 48.9 9.2 86 9-101 10-98 (205)
247 TIGR00936 ahcY adenosylhomocys 96.4 0.021 4.6E-07 54.4 9.4 81 8-98 195-276 (406)
248 COG1832 Predicted CoA-binding 96.4 0.036 7.9E-07 43.7 9.0 102 8-126 16-122 (140)
249 COG2910 Putative NADH-flavin r 96.4 0.013 2.8E-07 48.8 6.8 70 9-82 1-71 (211)
250 PRK08410 2-hydroxyacid dehydro 96.4 0.0069 1.5E-07 56.0 5.9 63 8-84 145-207 (311)
251 COG1648 CysG Siroheme synthase 96.3 0.027 5.8E-07 48.8 9.0 94 7-106 11-107 (210)
252 TIGR01327 PGDH D-3-phosphoglyc 96.3 0.01 2.2E-07 58.9 7.3 66 9-84 139-204 (525)
253 PRK06223 malate dehydrogenase; 96.3 0.034 7.3E-07 51.3 10.3 70 8-81 2-78 (307)
254 PLN02928 oxidoreductase family 96.3 0.0091 2E-07 56.0 6.6 71 8-84 159-237 (347)
255 PTZ00075 Adenosylhomocysteinas 96.3 0.018 3.9E-07 55.7 8.5 66 8-83 254-319 (476)
256 PRK08229 2-dehydropantoate 2-r 96.3 0.017 3.7E-07 54.1 8.4 80 8-94 2-94 (341)
257 COG0151 PurD Phosphoribosylami 96.3 0.025 5.4E-07 53.2 9.2 130 9-146 1-134 (428)
258 cd00401 AdoHcyase S-adenosyl-L 96.3 0.027 5.8E-07 53.9 9.6 82 9-100 203-285 (413)
259 PRK08644 thiamine biosynthesis 96.3 0.024 5.1E-07 49.3 8.6 35 7-42 27-61 (212)
260 TIGR03450 mycothiol_INO1 inosi 96.3 0.036 7.8E-07 50.7 9.9 135 9-146 1-200 (351)
261 PRK09414 glutamate dehydrogena 96.3 0.068 1.5E-06 51.6 12.3 116 7-128 231-364 (445)
262 cd05292 LDH_2 A subgroup of L- 96.3 0.014 3.1E-07 53.9 7.6 73 9-84 1-78 (308)
263 PRK00141 murD UDP-N-acetylmura 96.3 0.028 6E-07 55.3 10.0 86 9-102 16-103 (473)
264 cd05293 LDH_1 A subgroup of L- 96.3 0.011 2.4E-07 54.6 6.6 71 8-81 3-79 (312)
265 PRK06598 aspartate-semialdehyd 96.3 0.0071 1.5E-07 56.7 5.3 135 9-152 2-153 (369)
266 TIGR03025 EPS_sugtrans exopoly 96.2 0.02 4.4E-07 55.7 8.8 71 8-85 125-200 (445)
267 PRK11790 D-3-phosphoglycerate 96.2 0.011 2.3E-07 56.9 6.6 64 8-84 151-214 (409)
268 PF02056 Glyco_hydro_4: Family 96.2 0.017 3.7E-07 48.6 7.0 74 10-85 1-85 (183)
269 TIGR01202 bchC 2-desacetyl-2-h 96.2 0.12 2.5E-06 47.7 13.3 83 10-102 147-230 (308)
270 PLN02237 glyceraldehyde-3-phos 96.2 0.034 7.3E-07 53.0 9.5 98 8-105 75-198 (442)
271 PF00056 Ldh_1_N: lactate/mala 96.2 0.011 2.4E-07 47.9 5.5 73 9-83 1-79 (141)
272 PTZ00082 L-lactate dehydrogena 96.2 0.019 4.1E-07 53.3 7.6 71 7-81 5-82 (321)
273 KOG0069 Glyoxylate/hydroxypyru 96.1 0.012 2.7E-07 54.1 6.2 69 8-86 162-230 (336)
274 cd05291 HicDH_like L-2-hydroxy 96.1 0.02 4.2E-07 52.9 7.5 72 10-84 2-79 (306)
275 PRK08223 hypothetical protein; 96.1 0.051 1.1E-06 49.2 9.9 36 7-43 26-61 (287)
276 TIGR01296 asd_B aspartate-semi 96.1 0.0066 1.4E-07 56.8 4.3 85 10-101 1-89 (339)
277 PRK00066 ldh L-lactate dehydro 96.1 0.016 3.5E-07 53.6 6.9 73 7-82 5-82 (315)
278 PRK10669 putative cation:proto 96.1 0.085 1.8E-06 53.0 12.5 119 9-146 418-544 (558)
279 PTZ00117 malate dehydrogenase; 96.1 0.028 6.1E-07 52.2 8.3 71 7-81 4-81 (319)
280 PRK15076 alpha-galactosidase; 96.1 0.024 5.3E-07 54.7 8.1 113 9-124 2-138 (431)
281 KOG0024 Sorbitol dehydrogenase 96.0 0.14 3E-06 46.7 12.1 136 9-153 171-317 (354)
282 PRK12475 thiamine/molybdopteri 96.0 0.044 9.6E-07 51.2 9.4 35 8-43 24-58 (338)
283 COG1486 CelF Alpha-galactosida 96.0 0.023 5E-07 54.1 7.4 76 7-85 2-89 (442)
284 PRK13581 D-3-phosphoglycerate 96.0 0.018 3.8E-07 57.3 7.1 66 8-84 140-205 (526)
285 cd05313 NAD_bind_2_Glu_DH NAD( 96.0 0.048 1E-06 48.5 9.0 114 7-129 37-175 (254)
286 PRK09496 trkA potassium transp 96.0 0.029 6.3E-07 54.7 8.4 89 9-102 1-97 (453)
287 TIGR03023 WcaJ_sugtrans Undeca 96.0 0.017 3.7E-07 56.4 6.6 71 8-85 128-203 (451)
288 TIGR00518 alaDH alanine dehydr 95.9 0.047 1E-06 51.8 9.1 70 8-82 167-239 (370)
289 PRK03659 glutathione-regulated 95.9 0.038 8.3E-07 55.9 8.8 102 8-118 400-509 (601)
290 PRK12853 glucose-6-phosphate 1 95.8 0.13 2.7E-06 50.2 11.8 54 69-122 105-163 (482)
291 PRK06487 glycerate dehydrogena 95.8 0.022 4.8E-07 52.7 6.5 60 9-84 149-208 (317)
292 PRK10124 putative UDP-glucose 95.8 0.055 1.2E-06 52.9 9.5 68 8-85 143-215 (463)
293 TIGR01763 MalateDH_bact malate 95.8 0.036 7.8E-07 51.1 7.7 71 9-83 2-79 (305)
294 cd01078 NAD_bind_H4MPT_DH NADP 95.8 0.046 9.9E-07 46.8 7.9 75 8-86 28-110 (194)
295 PRK06932 glycerate dehydrogena 95.8 0.021 4.6E-07 52.8 6.2 62 8-84 147-208 (314)
296 PTZ00434 cytosolic glyceraldeh 95.8 0.039 8.5E-07 51.3 7.8 99 8-106 3-138 (361)
297 PRK04148 hypothetical protein; 95.7 0.11 2.5E-06 41.3 9.2 96 8-110 17-114 (134)
298 cd08239 THR_DH_like L-threonin 95.7 0.6 1.3E-05 43.4 15.7 132 9-152 165-305 (339)
299 TIGR02354 thiF_fam2 thiamine b 95.7 0.13 2.7E-06 44.3 10.1 35 7-42 20-54 (200)
300 PLN02306 hydroxypyruvate reduc 95.7 0.039 8.4E-07 52.5 7.5 73 8-84 165-247 (386)
301 PRK06718 precorrin-2 dehydroge 95.6 0.074 1.6E-06 45.9 8.6 88 8-102 10-99 (202)
302 PRK00421 murC UDP-N-acetylmura 95.6 0.067 1.5E-06 52.4 9.4 87 8-103 7-96 (461)
303 PRK08762 molybdopterin biosynt 95.6 0.051 1.1E-06 51.7 8.3 35 7-42 134-168 (376)
304 PLN02494 adenosylhomocysteinas 95.6 0.063 1.4E-06 51.9 8.7 79 9-97 255-334 (477)
305 PRK13397 3-deoxy-7-phosphohept 95.6 0.18 3.9E-06 44.7 10.9 79 45-125 70-150 (250)
306 PRK03562 glutathione-regulated 95.6 0.067 1.5E-06 54.3 9.4 102 8-118 400-509 (621)
307 PLN02586 probable cinnamyl alc 95.6 0.35 7.6E-06 45.6 13.8 87 10-101 186-275 (360)
308 PRK10309 galactitol-1-phosphat 95.6 0.54 1.2E-05 44.0 15.0 90 9-103 162-260 (347)
309 PLN02477 glutamate dehydrogena 95.6 0.092 2E-06 50.2 9.7 113 7-128 205-331 (410)
310 PF00670 AdoHcyase_NAD: S-aden 95.6 0.075 1.6E-06 43.7 7.9 66 9-84 24-89 (162)
311 TIGR00112 proC pyrroline-5-car 95.6 0.25 5.5E-06 44.0 12.1 77 33-117 10-89 (245)
312 PRK14106 murD UDP-N-acetylmura 95.6 0.1 2.2E-06 50.9 10.3 90 7-102 4-97 (450)
313 PF10100 DUF2338: Uncharacteri 95.6 0.34 7.4E-06 45.5 12.9 134 10-146 3-189 (429)
314 PLN02602 lactate dehydrogenase 95.6 0.05 1.1E-06 51.0 7.8 71 9-82 38-114 (350)
315 PF00208 ELFV_dehydrog: Glutam 95.5 0.15 3.2E-06 45.3 10.3 122 7-133 31-172 (244)
316 PF13460 NAD_binding_10: NADH( 95.5 0.057 1.2E-06 45.4 7.4 87 11-126 1-91 (183)
317 PRK07688 thiamine/molybdopteri 95.4 0.1 2.3E-06 48.8 9.4 36 7-43 23-58 (339)
318 PRK15116 sulfur acceptor prote 95.4 0.14 3E-06 46.1 9.9 127 7-147 29-186 (268)
319 PRK09496 trkA potassium transp 95.4 0.14 3E-06 50.0 10.7 109 8-128 231-347 (453)
320 cd08237 ribitol-5-phosphate_DH 95.4 0.3 6.5E-06 45.7 12.5 86 9-102 165-255 (341)
321 PRK01710 murD UDP-N-acetylmura 95.4 0.11 2.3E-06 50.9 9.7 88 9-103 15-107 (458)
322 cd08298 CAD2 Cinnamyl alcohol 95.4 0.56 1.2E-05 43.3 14.2 85 9-101 169-253 (329)
323 PF13241 NAD_binding_7: Putati 95.4 0.1 2.2E-06 39.7 7.6 84 7-102 6-90 (103)
324 PLN02178 cinnamyl-alcohol dehy 95.3 0.76 1.7E-05 43.7 15.2 90 9-101 180-270 (375)
325 PRK14982 acyl-ACP reductase; P 95.3 0.076 1.7E-06 49.4 7.9 90 8-104 155-245 (340)
326 PTZ00079 NADP-specific glutama 95.2 0.19 4.1E-06 48.4 10.5 116 7-128 236-373 (454)
327 COG0771 MurD UDP-N-acetylmuram 95.2 0.056 1.2E-06 52.1 7.0 90 8-103 7-99 (448)
328 TIGR02822 adh_fam_2 zinc-bindi 95.2 0.98 2.1E-05 42.0 15.3 85 9-101 167-251 (329)
329 COG2242 CobL Precorrin-6B meth 95.2 0.74 1.6E-05 38.7 12.7 111 9-125 36-153 (187)
330 PLN02514 cinnamyl-alcohol dehy 95.2 1.1 2.4E-05 42.2 15.6 91 9-102 182-274 (357)
331 PRK05600 thiamine biosynthesis 95.1 0.12 2.6E-06 48.9 9.0 35 7-42 40-74 (370)
332 PRK05708 2-dehydropantoate 2-r 95.1 0.072 1.6E-06 49.1 7.3 45 8-54 2-46 (305)
333 COG1086 Predicted nucleoside-d 95.1 0.059 1.3E-06 52.7 6.8 89 7-101 115-208 (588)
334 cd00755 YgdL_like Family of ac 95.1 0.41 8.9E-06 42.1 11.6 141 7-164 10-181 (231)
335 cd01483 E1_enzyme_family Super 95.1 0.2 4.4E-06 40.4 9.0 112 10-131 1-121 (143)
336 CHL00194 ycf39 Ycf39; Provisio 95.1 0.61 1.3E-05 43.1 13.4 98 9-125 1-102 (317)
337 KOG2733 Uncharacterized membra 95.0 0.31 6.7E-06 45.0 10.7 115 8-128 5-141 (423)
338 PF02558 ApbA: Ketopantoate re 95.0 0.063 1.4E-06 43.7 6.0 77 11-93 1-87 (151)
339 cd01492 Aos1_SUMO Ubiquitin ac 95.0 0.24 5.3E-06 42.5 9.8 35 8-43 21-55 (197)
340 PRK06091 membrane protein FdrA 95.0 0.1 2.2E-06 51.3 8.1 67 61-128 104-171 (555)
341 cd05290 LDH_3 A subgroup of L- 94.9 0.062 1.3E-06 49.5 6.3 70 10-82 1-77 (307)
342 TIGR01361 DAHP_synth_Bsub phos 94.9 0.22 4.8E-06 44.7 9.6 78 46-125 81-160 (260)
343 PRK06395 phosphoribosylamine-- 94.9 0.07 1.5E-06 51.8 6.9 89 8-102 2-94 (435)
344 PRK01438 murD UDP-N-acetylmura 94.9 0.14 3.1E-06 50.3 9.2 88 8-103 16-108 (480)
345 PLN02827 Alcohol dehydrogenase 94.9 0.99 2.2E-05 42.9 14.7 86 9-97 195-287 (378)
346 PF00899 ThiF: ThiF family; I 94.9 0.035 7.7E-07 44.4 4.0 119 8-132 2-125 (135)
347 TIGR03570 NeuD_NnaD sugar O-ac 94.8 0.1 2.2E-06 44.5 7.0 81 10-97 1-83 (201)
348 PRK14031 glutamate dehydrogena 94.8 0.31 6.8E-06 47.0 10.8 115 7-127 227-362 (444)
349 KOG0023 Alcohol dehydrogenase, 94.8 0.21 4.5E-06 45.5 8.9 101 9-134 183-283 (360)
350 PRK02472 murD UDP-N-acetylmura 94.8 0.11 2.4E-06 50.5 8.1 87 9-103 6-98 (447)
351 cd08281 liver_ADH_like1 Zinc-d 94.8 1 2.2E-05 42.6 14.3 89 10-101 194-287 (371)
352 PRK06444 prephenate dehydrogen 94.7 0.063 1.4E-06 46.0 5.3 50 9-93 1-51 (197)
353 TIGR03022 WbaP_sugtrans Undeca 94.7 0.078 1.7E-06 51.8 6.8 84 9-98 126-216 (456)
354 COG0364 Zwf Glucose-6-phosphat 94.7 0.12 2.7E-06 49.5 7.6 189 7-212 6-255 (483)
355 PRK14573 bifunctional D-alanyl 94.7 0.17 3.6E-06 53.3 9.5 87 8-103 4-93 (809)
356 TIGR02964 xanthine_xdhC xanthi 94.7 0.47 1E-05 42.2 11.0 108 8-124 100-211 (246)
357 PRK01368 murD UDP-N-acetylmura 94.7 0.16 3.5E-06 49.6 8.8 88 8-103 6-93 (454)
358 cd05197 GH4_glycoside_hydrolas 94.7 0.17 3.6E-06 48.9 8.7 86 9-97 1-101 (425)
359 PLN02285 methionyl-tRNA formyl 94.7 0.097 2.1E-06 48.8 6.8 76 6-82 4-102 (334)
360 PTZ00353 glycosomal glyceralde 94.6 0.29 6.4E-06 45.5 9.9 98 8-105 2-125 (342)
361 PRK04690 murD UDP-N-acetylmura 94.6 0.14 3E-06 50.2 8.1 86 9-103 9-99 (468)
362 PRK13789 phosphoribosylamine-- 94.5 0.084 1.8E-06 51.1 6.4 91 7-101 3-96 (426)
363 TIGR01534 GAPDH-I glyceraldehy 94.5 0.14 3E-06 47.4 7.5 96 10-105 1-123 (327)
364 TIGR01087 murD UDP-N-acetylmur 94.5 0.17 3.6E-06 49.2 8.4 87 10-104 1-93 (433)
365 PRK00005 fmt methionyl-tRNA fo 94.5 0.1 2.2E-06 48.2 6.5 72 9-83 1-88 (309)
366 TIGR03451 mycoS_dep_FDH mycoth 94.4 1.6 3.4E-05 41.1 14.7 89 9-102 178-275 (358)
367 cd05298 GH4_GlvA_pagL_like Gly 94.4 0.21 4.6E-06 48.3 8.7 87 9-98 1-102 (437)
368 PRK05562 precorrin-2 dehydroge 94.4 0.31 6.8E-06 42.5 8.9 89 7-101 24-114 (223)
369 TIGR02355 moeB molybdopterin s 94.3 0.28 6E-06 43.5 8.7 121 7-135 23-150 (240)
370 PRK01390 murD UDP-N-acetylmura 94.3 0.28 6.1E-06 48.0 9.7 86 9-103 10-99 (460)
371 PF00479 G6PD_N: Glucose-6-pho 94.3 0.079 1.7E-06 44.8 4.9 48 75-122 107-162 (183)
372 PRK12557 H(2)-dependent methyl 94.3 0.96 2.1E-05 42.4 12.6 101 9-120 1-131 (342)
373 PRK06988 putative formyltransf 94.3 0.14 3.1E-06 47.3 7.0 72 8-82 2-86 (312)
374 PRK06719 precorrin-2 dehydroge 94.2 0.2 4.4E-06 41.3 7.1 127 7-146 12-140 (157)
375 PRK08328 hypothetical protein; 94.1 0.43 9.3E-06 42.1 9.5 121 8-132 27-151 (231)
376 TIGR03201 dearomat_had 6-hydro 94.1 2.9 6.3E-05 39.1 15.8 91 9-103 168-272 (349)
377 cd05296 GH4_P_beta_glucosidase 94.1 0.23 5E-06 47.8 8.3 73 9-84 1-86 (419)
378 TIGR03366 HpnZ_proposed putati 94.1 0.67 1.4E-05 42.0 11.0 88 10-100 123-214 (280)
379 TIGR00715 precor6x_red precorr 94.1 0.29 6.3E-06 43.8 8.3 96 9-106 1-102 (256)
380 PRK06153 hypothetical protein; 94.0 0.22 4.8E-06 46.9 7.5 110 7-128 175-295 (393)
381 KOG2653 6-phosphogluconate deh 94.0 0.41 8.9E-06 44.1 8.9 70 8-81 6-78 (487)
382 PRK12595 bifunctional 3-deoxy- 93.9 0.41 8.8E-06 45.1 9.4 79 45-125 173-253 (360)
383 PRK00885 phosphoribosylamine-- 93.9 0.25 5.5E-06 47.7 8.3 112 9-126 1-116 (420)
384 PRK05690 molybdopterin biosynt 93.9 0.51 1.1E-05 42.0 9.6 120 8-135 32-158 (245)
385 PRK04308 murD UDP-N-acetylmura 93.9 0.36 7.7E-06 47.0 9.3 88 8-103 5-97 (445)
386 cd05284 arabinose_DH_like D-ar 93.8 2.5 5.5E-05 39.1 14.7 133 9-153 169-309 (340)
387 PF13727 CoA_binding_3: CoA-bi 93.8 0.049 1.1E-06 45.3 2.8 87 9-101 78-172 (175)
388 cd00757 ThiF_MoeB_HesA_family 93.8 0.36 7.8E-06 42.4 8.4 36 7-43 20-55 (228)
389 TIGR01759 MalateDH-SF1 malate 93.8 0.18 4E-06 46.7 6.8 73 7-82 2-88 (323)
390 PRK00107 gidB 16S rRNA methylt 93.7 0.97 2.1E-05 38.4 10.5 113 8-127 46-164 (187)
391 TIGR01082 murC UDP-N-acetylmur 93.7 0.37 7.9E-06 47.0 9.0 85 10-103 1-88 (448)
392 TIGR01745 asd_gamma aspartate- 93.7 0.085 1.8E-06 49.5 4.3 90 9-103 1-95 (366)
393 PTZ00325 malate dehydrogenase; 93.6 0.25 5.5E-06 45.7 7.3 37 6-42 6-43 (321)
394 PRK05784 phosphoribosylamine-- 93.5 0.42 9.1E-06 47.0 9.1 88 9-101 1-97 (486)
395 TIGR03013 EpsB_2 sugar transfe 93.5 0.38 8.2E-06 46.8 8.6 69 9-85 125-198 (442)
396 cd00650 LDH_MDH_like NAD-depen 93.4 0.19 4.2E-06 45.2 6.1 69 11-81 1-78 (263)
397 PRK14030 glutamate dehydrogena 93.3 1.5 3.2E-05 42.5 12.1 116 7-129 227-365 (445)
398 PRK05086 malate dehydrogenase; 93.3 0.27 5.8E-06 45.5 7.0 72 9-83 1-79 (312)
399 PRK15204 undecaprenyl-phosphat 93.3 0.67 1.5E-05 45.6 10.1 81 9-98 147-235 (476)
400 cd01336 MDH_cytoplasmic_cytoso 93.3 0.14 3.1E-06 47.6 5.1 72 7-81 1-86 (325)
401 cd08230 glucose_DH Glucose deh 93.2 0.68 1.5E-05 43.5 9.8 90 9-103 174-269 (355)
402 PRK14852 hypothetical protein; 93.2 0.62 1.3E-05 49.1 10.0 94 7-105 331-457 (989)
403 cd01486 Apg7 Apg7 is an E1-lik 93.1 0.53 1.2E-05 42.9 8.4 32 10-42 1-32 (307)
404 TIGR01757 Malate-DH_plant mala 93.1 0.26 5.7E-06 46.8 6.7 74 7-82 43-129 (387)
405 PF04321 RmlD_sub_bind: RmlD s 93.1 0.32 6.9E-06 44.4 7.0 96 9-132 1-102 (286)
406 TIGR00138 gidB 16S rRNA methyl 93.1 1.6 3.4E-05 36.9 10.8 115 8-126 43-163 (181)
407 PLN00112 malate dehydrogenase 93.0 0.25 5.5E-06 47.7 6.5 74 6-82 98-185 (444)
408 PRK03806 murD UDP-N-acetylmura 93.0 0.67 1.4E-05 45.0 9.6 87 8-104 6-96 (438)
409 cd05279 Zn_ADH1 Liver alcohol 93.0 2.3 5E-05 40.1 13.1 87 10-100 186-281 (365)
410 cd08296 CAD_like Cinnamyl alco 92.9 4.4 9.4E-05 37.6 14.7 87 10-100 166-255 (333)
411 COG1893 ApbA Ketopantoate redu 92.9 0.36 7.9E-06 44.5 7.2 80 9-94 1-88 (307)
412 cd08242 MDR_like Medium chain 92.9 0.94 2E-05 41.6 10.1 87 9-102 157-243 (319)
413 COG1062 AdhC Zn-dependent alco 92.9 1.3 2.7E-05 40.9 10.3 91 9-104 187-286 (366)
414 cd01485 E1-1_like Ubiquitin ac 92.8 0.77 1.7E-05 39.4 8.7 116 8-131 19-145 (198)
415 PRK05442 malate dehydrogenase; 92.8 0.17 3.7E-06 47.0 5.0 73 7-82 3-89 (326)
416 cd08238 sorbose_phosphate_red 92.8 4.1 8.9E-05 39.1 14.7 91 10-101 178-286 (410)
417 cd01338 MDH_choloroplast_like 92.8 0.16 3.5E-06 47.1 4.7 74 7-82 1-87 (322)
418 cd01080 NAD_bind_m-THF_DH_Cycl 92.7 0.41 8.9E-06 39.9 6.7 71 7-103 43-114 (168)
419 cd01339 LDH-like_MDH L-lactate 92.7 0.34 7.5E-06 44.5 6.8 68 11-82 1-75 (300)
420 TIGR00460 fmt methionyl-tRNA f 92.7 0.41 8.8E-06 44.3 7.3 71 9-82 1-87 (313)
421 PRK00121 trmB tRNA (guanine-N( 92.6 2.5 5.4E-05 36.3 11.7 72 8-82 41-120 (202)
422 PRK14851 hypothetical protein; 92.6 0.78 1.7E-05 47.0 9.7 95 7-104 42-167 (679)
423 PRK13398 3-deoxy-7-phosphohept 92.6 2.1 4.6E-05 38.5 11.5 79 45-125 82-162 (266)
424 KOG0068 D-3-phosphoglycerate d 92.6 0.33 7.2E-06 44.5 6.2 63 10-83 148-210 (406)
425 PRK13396 3-deoxy-7-phosphohept 92.6 0.86 1.9E-05 42.6 9.2 77 46-124 157-235 (352)
426 TIGR00877 purD phosphoribosyla 92.6 0.39 8.5E-06 46.4 7.4 88 9-101 1-92 (423)
427 KOG2711 Glycerol-3-phosphate d 92.6 0.81 1.8E-05 42.1 8.6 102 6-109 19-145 (372)
428 PRK04663 murD UDP-N-acetylmura 92.6 0.71 1.5E-05 44.9 9.1 86 9-103 8-98 (438)
429 PRK09424 pntA NAD(P) transhydr 92.5 0.77 1.7E-05 45.3 9.2 45 8-55 165-209 (509)
430 cd08255 2-desacetyl-2-hydroxye 92.5 1.3 2.9E-05 39.6 10.3 88 9-101 99-187 (277)
431 KOG1209 1-Acyl dihydroxyaceton 92.4 1.7 3.7E-05 37.4 9.8 48 7-56 6-55 (289)
432 cd08256 Zn_ADH2 Alcohol dehydr 92.4 4.7 0.0001 37.6 14.3 87 10-101 177-271 (350)
433 PRK03803 murD UDP-N-acetylmura 92.4 0.86 1.9E-05 44.4 9.5 89 7-103 5-98 (448)
434 cd08240 6_hydroxyhexanoate_dh_ 92.3 6.5 0.00014 36.6 15.1 87 9-101 177-271 (350)
435 cd01484 E1-2_like Ubiquitin ac 92.3 1.3 2.7E-05 39.2 9.5 33 10-43 1-33 (234)
436 cd00300 LDH_like L-lactate deh 92.3 0.4 8.6E-06 44.1 6.6 70 11-83 1-76 (300)
437 KOG1255 Succinyl-CoA synthetas 92.2 0.57 1.2E-05 40.7 6.9 108 7-123 37-145 (329)
438 PRK05198 2-dehydro-3-deoxyphos 92.2 0.52 1.1E-05 41.8 6.8 77 46-124 73-151 (264)
439 COG0604 Qor NADPH:quinone redu 92.2 3.1 6.8E-05 38.7 12.5 92 9-104 144-242 (326)
440 PRK00536 speE spermidine synth 92.2 3 6.4E-05 37.5 11.8 42 7-53 72-113 (262)
441 TIGR01381 E1_like_apg7 E1-like 92.1 0.93 2E-05 45.6 9.2 34 7-41 337-370 (664)
442 PLN03154 putative allyl alcoho 92.0 3.7 8.1E-05 38.5 13.0 89 9-101 160-255 (348)
443 PRK02705 murD UDP-N-acetylmura 92.0 0.87 1.9E-05 44.5 9.0 86 10-103 2-98 (459)
444 COG0223 Fmt Methionyl-tRNA for 91.9 0.67 1.5E-05 42.4 7.4 72 8-81 1-87 (307)
445 cd08269 Zn_ADH9 Alcohol dehydr 91.9 6.9 0.00015 35.5 14.5 87 9-101 131-226 (312)
446 PLN02740 Alcohol dehydrogenase 91.8 2.7 5.8E-05 40.0 12.0 91 9-103 200-300 (381)
447 cd05294 LDH-like_MDH_nadp A la 91.8 0.4 8.7E-06 44.3 6.1 70 9-82 1-81 (309)
448 TIGR00561 pntA NAD(P) transhyd 91.8 1.5 3.1E-05 43.3 10.1 45 8-55 164-208 (511)
449 PRK00377 cbiT cobalt-precorrin 91.8 2.4 5.2E-05 36.2 10.6 72 8-81 41-119 (198)
450 PRK12854 glucose-6-phosphate 1 91.8 0.36 7.8E-06 47.0 5.9 48 76-123 121-172 (484)
451 PRK08673 3-deoxy-7-phosphohept 91.7 2 4.2E-05 40.1 10.4 78 46-125 149-228 (335)
452 PRK11908 NAD-dependent epimera 91.7 0.91 2E-05 42.5 8.4 37 9-46 2-39 (347)
453 TIGR03569 NeuB_NnaB N-acetylne 91.6 1.7 3.7E-05 40.4 9.9 78 46-125 81-160 (329)
454 PLN02427 UDP-apiose/xylose syn 91.6 1.2 2.6E-05 42.3 9.3 42 6-48 12-54 (386)
455 PRK07878 molybdopterin biosynt 91.5 1.1 2.3E-05 43.0 8.7 122 7-136 41-169 (392)
456 cd08301 alcohol_DH_plants Plan 91.4 3.3 7.2E-05 39.0 12.1 87 9-102 189-288 (369)
457 TIGR01362 KDO8P_synth 3-deoxy- 91.4 0.79 1.7E-05 40.5 7.0 76 46-123 65-142 (258)
458 cd05283 CAD1 Cinnamyl alcohol 91.4 8.9 0.00019 35.5 14.8 88 9-103 171-263 (337)
459 TIGR00091 tRNA (guanine-N(7)-) 91.4 4.8 0.0001 34.3 11.9 111 8-124 17-149 (194)
460 cd01337 MDH_glyoxysomal_mitoch 91.3 0.62 1.3E-05 43.0 6.7 71 9-83 1-78 (310)
461 COG0039 Mdh Malate/lactate deh 91.3 0.34 7.4E-06 44.4 4.9 69 9-81 1-77 (313)
462 COG0334 GdhA Glutamate dehydro 91.2 2 4.4E-05 40.7 9.9 109 7-128 206-332 (411)
463 PRK02006 murD UDP-N-acetylmura 91.0 1.4 3.1E-05 43.6 9.4 88 9-103 8-103 (498)
464 PRK05597 molybdopterin biosynt 91.0 1.2 2.6E-05 42.0 8.5 121 7-135 27-154 (355)
465 COG0421 SpeE Spermidine syntha 91.0 3.6 7.7E-05 37.4 11.1 70 9-80 78-156 (282)
466 PRK00676 hemA glutamyl-tRNA re 91.0 0.62 1.3E-05 43.3 6.3 73 8-95 174-250 (338)
467 COG2201 CheB Chemotaxis respon 90.9 3.2 7E-05 38.7 10.9 107 8-115 1-119 (350)
468 PRK08462 biotin carboxylase; V 90.9 2.1 4.5E-05 41.7 10.4 93 8-101 4-105 (445)
469 COG2519 GCD14 tRNA(1-methylade 90.9 4.9 0.00011 35.6 11.4 113 9-125 96-213 (256)
470 KOG1502 Flavonol reductase/cin 90.9 2.5 5.5E-05 39.0 10.1 102 7-124 5-119 (327)
471 cd01490 Ube1_repeat2 Ubiquitin 90.8 1.3 2.9E-05 42.7 8.6 115 10-131 1-130 (435)
472 cd08246 crotonyl_coA_red croto 90.7 15 0.00033 34.8 16.6 90 9-102 195-314 (393)
473 cd01491 Ube1_repeat1 Ubiquitin 90.7 0.61 1.3E-05 42.4 6.0 117 7-132 18-138 (286)
474 TIGR03586 PseI pseudaminic aci 90.7 2.4 5.3E-05 39.3 9.9 78 46-125 82-161 (327)
475 cd05191 NAD_bind_amino_acid_DH 90.7 0.89 1.9E-05 33.1 5.8 33 8-41 23-55 (86)
476 PF01262 AlaDh_PNT_C: Alanine 90.6 0.43 9.3E-06 39.8 4.6 45 7-53 19-63 (168)
477 COG3367 Uncharacterized conser 90.6 0.77 1.7E-05 41.9 6.3 106 20-128 15-126 (339)
478 cd08277 liver_alcohol_DH_like 90.6 5.6 0.00012 37.5 12.7 91 9-103 186-286 (365)
479 COG1179 Dinucleotide-utilizing 90.5 2.3 5E-05 37.3 8.9 142 8-164 30-202 (263)
480 COG1250 FadB 3-hydroxyacyl-CoA 90.5 0.62 1.3E-05 42.7 5.8 38 8-47 3-40 (307)
481 TIGR03693 ocin_ThiF_like putat 90.4 2.6 5.7E-05 42.1 10.3 98 7-106 128-240 (637)
482 COG1091 RfbD dTDP-4-dehydrorha 90.4 1 2.2E-05 40.7 7.0 94 9-127 1-95 (281)
483 TIGR01142 purT phosphoribosylg 90.3 0.58 1.3E-05 44.4 5.8 84 10-100 1-88 (380)
484 cd08293 PTGR2 Prostaglandin re 90.3 9.4 0.0002 35.4 13.9 89 9-101 156-251 (345)
485 PLN02539 glucose-6-phosphate 1 90.3 0.6 1.3E-05 45.6 5.8 47 76-122 130-183 (491)
486 cd08233 butanediol_DH_like (2R 90.2 2.3 5.1E-05 39.7 9.8 132 9-152 174-315 (351)
487 PRK06849 hypothetical protein; 90.2 0.93 2E-05 43.3 7.1 114 7-127 3-131 (389)
488 cd00704 MDH Malate dehydrogena 90.2 0.32 7E-06 45.2 3.8 71 9-81 1-84 (323)
489 cd08300 alcohol_DH_class_III c 90.2 7.5 0.00016 36.7 13.2 92 9-103 188-288 (368)
490 PRK10083 putative oxidoreducta 90.1 3.6 7.8E-05 38.1 10.9 89 9-101 162-256 (339)
491 COG5495 Uncharacterized conser 90.1 1.9 4E-05 37.5 7.9 48 7-56 9-57 (289)
492 COG4566 TtrR Response regulato 90.1 1.3 2.8E-05 37.3 6.8 74 33-108 4-109 (202)
493 PLN00106 malate dehydrogenase 89.9 0.68 1.5E-05 43.0 5.7 71 8-82 18-95 (323)
494 TIGR02819 fdhA_non_GSH formald 89.9 3.1 6.7E-05 39.8 10.4 107 9-131 187-300 (393)
495 TIGR03649 ergot_EASG ergot alk 89.9 1 2.3E-05 40.7 6.9 68 10-83 1-77 (285)
496 PRK09288 purT phosphoribosylgl 89.7 1 2.2E-05 43.0 7.1 87 7-100 11-101 (395)
497 PRK12457 2-dehydro-3-deoxyphos 89.7 1.4 3.1E-05 39.4 7.2 74 46-121 79-154 (281)
498 PF02153 PDH: Prephenate dehyd 89.7 3.1 6.6E-05 37.3 9.6 73 24-103 2-77 (258)
499 cd08295 double_bond_reductase_ 89.6 12 0.00027 34.6 14.0 89 9-101 153-248 (338)
500 PRK07411 hypothetical protein; 89.5 1.8 3.9E-05 41.4 8.4 119 7-135 37-164 (390)
No 1
>PRK11579 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.7e-55 Score=410.34 Aligned_cols=335 Identities=16% Similarity=0.130 Sum_probs=259.6
Q ss_pred ceeEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+++||||||+|.+|. .|++.+...|++++++|||++++++. ++++. ..+|+|++++|+++++|+|+|+||+..
T Consensus 3 ~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~~---~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 3 DKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWPT---VTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCCC---CceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 369999999999998 58899999999999999999987653 45543 368999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeec
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFA 165 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~ 165 (362)
|++++++||++||||+||||++.|++++++|.++|+++|+++++++++||+|.++++|++| ++|.||+|..++.++..+
T Consensus 77 H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i-~~g~iG~i~~~~~~~~~~ 155 (346)
T PRK11579 77 HFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALL-AEGVLGEVAYFESHFDRF 155 (346)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHH-hcCCCCCeEEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999877543
Q ss_pred CCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEee
Q 018020 166 GDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245 (362)
Q Consensus 166 ~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~ 245 (362)
.+. ...+|+..+.. |||++.|+|+|.+|+++||+| .|.+|++.........+.+|.+.++++|+||.. ++..++
T Consensus 156 ~~~--~~~~w~~~~~~-ggG~l~d~g~H~id~~~~l~G--~~~~v~a~~~~~~~~~~~~D~~~~~l~f~~g~~-~~~~s~ 229 (346)
T PRK11579 156 RPQ--VRQRWREQGGP-GSGIWYDLAPHLLDQAIQLFG--LPVSITVDLAQLRPGAQSTDYFHAILSYPQRRV-VLHGTM 229 (346)
T ss_pred CCC--CccccccCCCC-CCcchhhhhhhHHHHHHHHhC--CCeEEEEEeeeecCCCCCCceEEEEEEECCeEE-EEEEEe
Confidence 321 23467766554 559999999999999999999 589999876444334567899999999999855 788888
Q ss_pred eeCC-ceeEEEEeccceEEEcceeccC----CC---CcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHH
Q 018020 246 LANM-TMDITATGTNGSLQLHDFIIPF----RE---EEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFS 317 (362)
Q Consensus 246 ~~~~-~~~~~v~G~~G~i~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
.... ..+++|+|++|++.+.+..... .. ....+....... ... ..... ... ..........|..+++
T Consensus 230 ~~~~~~~~~~i~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~-~~~-~~~~~~~~~~~~~~~~ 304 (346)
T PRK11579 230 LAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDG--VLT-LVEGE-ERV-EETLLTLPGNYPAYYA 304 (346)
T ss_pred eecCCCCEEEEEecCceEEEcCCCccHHHHhCCCCCCCCCCCCCCccC--eEE-EecCC-ccc-eeeecCCCCCHHHHHH
Confidence 7653 4589999999999765421110 00 000000000000 000 00000 000 0000111234667899
Q ss_pred HHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 318 RLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 318 ~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
+|+++|++|.+|..+ .|+++++++|++|+++|+++| ++|.|.
T Consensus 305 ~f~~~i~~~~~~~~~-~e~a~~~l~i~~a~~~Sa~~g-~~v~l~ 346 (346)
T PRK11579 305 AIRDALNGDGENPVP-ASQAIQVMELIELGIESAKHR-ATLCLA 346 (346)
T ss_pred HHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHhcC-CEEecC
Confidence 999999988777665 788999999999999999999 999873
No 2
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=100.00 E-value=2.5e-53 Score=398.49 Aligned_cols=335 Identities=27% Similarity=0.286 Sum_probs=271.4
Q ss_pred ceeEEEEEeccHHH-HHHHHHHhcCCC-cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIA-RKLSRAITLAPN-AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g-~~~~~~~~~~~~-~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
+++||||||+|.++ +.|++.+++.++ ++++++||++++++++++++|+++ ..|+|++++|+++++|+|+|+||+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~---~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA---KAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC---cccCCHHHHhcCCCCCEEEEcCCCh
Confidence 58999999999765 469999999987 799999999999999999999986 6899999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.|++++++||++|||||||||++.|++|+++|.++|+++|+++++++++||+|.++++|++| ++|.||+|.++++.+..
T Consensus 79 ~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li-~~g~lG~v~~~~~~~~~ 157 (342)
T COG0673 79 LHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELI-DSGALGEVVSVQASFSR 157 (342)
T ss_pred hhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHH-hcCCcCceEEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999887
Q ss_pred cCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccc-cCCCCeeEeeEEEEEeCCCcEEEEEE
Q 018020 165 AGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPV-LNEAGVILSCGASLHWDDGRVATFSC 243 (362)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~-~~~~~~~d~~~~~~~~~~G~~~~~~~ 243 (362)
.....+....|+..... +||.+.|+|+|.+|+++||+|..++.+|++..... ....+.+|.+.++++|+||.......
T Consensus 158 ~~~~~~~~~~~~~~~~~-~gG~l~d~giH~lD~~~~l~G~~~~~~v~a~~~~~~~~~~~~~d~~~~~l~~~~g~~~~~~~ 236 (342)
T COG0673 158 DRPNPPPPPWWRFDRAD-GGGALLDLGIHDLDLLRFLLGSPEPVSVSAKARNSPPGEAGVDDSASAILRFENGVLAVSWA 236 (342)
T ss_pred cccccCCccceeccccc-CCCchhhhHHHHHHHHHHHcCCcchhheeeecccCCCCcccccceEEEEEEecCCceEEEEE
Confidence 65431222344455554 44999999999999999999953578888885443 24567899999999999998888887
Q ss_pred eeeeCCce--eEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHH
Q 018020 244 SFLANMTM--DITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVA 321 (362)
Q Consensus 244 ~~~~~~~~--~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (362)
++...... .++|+|++|++.+++........ ....... .....+.. . ........+..++.+|++
T Consensus 237 ~~~~~~~~~~~~~i~G~~G~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~------~-~~~~~~~~~~~~~~~f~~ 303 (342)
T COG0673 237 SRTAAGGYDVRLEVYGTKGSLEVDDGNPTGELL--DGRIGLD----VRGGDGEL------L-LVPRRGNPYEGELEAFAD 303 (342)
T ss_pred EeeccCCcCceEEEEeccceEEeccccccccce--eeecccc----ccCCCccc------c-CCCcccchhHHHHHHHHH
Confidence 77765533 37899999999998643222110 0000000 00000000 0 001111168899999999
Q ss_pred hhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 322 NIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 322 ~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
+++++.++.. ..++++.++++++++++|.+++ ++|.+.
T Consensus 304 ~i~~~~~~~~-~~~~~~~~~~~~~a~~~s~~~~-~~v~~~ 341 (342)
T COG0673 304 AIRGGGEPLV-SGEDALKALRLAEAAYESAKEG-RTVKLA 341 (342)
T ss_pred HHhcCCCCCC-CHHHHHHHHHHHHHHHHhhccC-ceeeCC
Confidence 9998877744 4788999999999999999999 999874
No 3
>PRK10206 putative oxidoreductase; Provisional
Probab=100.00 E-value=5.9e-52 Score=387.02 Aligned_cols=332 Identities=16% Similarity=0.136 Sum_probs=253.4
Q ss_pred eeEEEEEeccHHHH-HHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIAR-KLSRAITL-APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~-~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||||||+|.++. .|++.+.. .+++++++|||++++++ +++++|+.. .+|+|+++||+++++|+|+|+||+..
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~---~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYSHI---HFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcCCC---cccCCHHHHhcCCCCCEEEEeCCchH
Confidence 48999999999764 68887754 56899999999998655 777888642 68999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeec
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFA 165 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~ 165 (362)
|++++++|+++||||+||||++.|++++++|.++|+++|+++++++++||+|.++++|++| ++|.||+|+.+++++.+.
T Consensus 77 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li-~~g~iG~i~~i~~~~~~~ 155 (344)
T PRK10206 77 HFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAI-ESGKLGEIVEVESHFDYY 155 (344)
T ss_pred HHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHH-HcCCCCCeEEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999887553
Q ss_pred CCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEee
Q 018020 166 GDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245 (362)
Q Consensus 166 ~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~ 245 (362)
.+. |...+...+||.++|+|+|.+|+++||+| +|++|++...........+|++.++++| +|.++++.++|
T Consensus 156 ~~~------~~~~~~~~~gG~l~d~g~H~ld~~~~l~G--~~~~v~a~~~~~~~~~~~~d~~~~~l~f-~~~~~~i~~s~ 226 (344)
T PRK10206 156 RPV------AETKPGLPQDGAFYGLGVHTMDQIISLFG--RPDHVAYDIRSLRNKANPDDTFEAQLFY-GDLKAIVKTSH 226 (344)
T ss_pred CCc------cccccCCCCCceeechhHHHHHHHHHHcC--CCeEEEEEeecccCCCCCCceEEEEEEe-CCEEEEEEEee
Confidence 322 11223334679999999999999999999 6899998754433344678999999999 67899999999
Q ss_pred eeCCc-eeEEEEeccceEEEcceeccCCCCcceEEec---ccccccc-ccccccc--CCccee-eecCCchhHHHHHHHH
Q 018020 246 LANMT-MDITATGTNGSLQLHDFIIPFREEEASYFTN---TRCFFND-LVTGWVP--LPSEHV-VTTDIPQEACMVREFS 317 (362)
Q Consensus 246 ~~~~~-~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ 317 (362)
..+.. .+++|+|++|++...+..... ..+... ....+.. ...+... ...... ..........|..++.
T Consensus 227 ~~~~~~~~~~i~G~~G~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (344)
T PRK10206 227 LVKIDYPKFIVHGKKGSFIKYGIDQQE----TSLKANIMPGEPGFAADDSVGVLEYVNDEGVTVREEMKPEMGDYGRVYD 302 (344)
T ss_pred eecCCCCeEEEEeccceEEEecCCccH----HHHhCCCCCCCCCCCcCCCCceEEEeccCCcceeeeeCCCCCCHHHHHH
Confidence 77654 479999999999886432110 000000 0000000 0000000 000000 0000111235788999
Q ss_pred HHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceee
Q 018020 318 RLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360 (362)
Q Consensus 318 ~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l 360 (362)
+|+++|++|.+|..+ .|+++++++|++|+++|+.- .+|.|
T Consensus 303 ~f~~ai~~g~~p~v~-~e~al~~l~iiea~~~sa~~--~~~~~ 342 (344)
T PRK10206 303 ALYQTLTHGAPNYVK-ESEVLTNLEILERGFEQASP--ATVTL 342 (344)
T ss_pred HHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHhcCCc--cceec
Confidence 999999988776654 88899999999999998653 45544
No 4
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.6e-50 Score=354.71 Aligned_cols=335 Identities=39% Similarity=0.590 Sum_probs=286.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|+||+|+|.|+..++..+...| +.+|+||+|++.++++.||+.+++| ++++|.|++|+++++++|+|+|++|+.
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 5799999999999999999999988 8999999999999999999999996 679999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.|+++++.+|.+|||||||||+|.|++|+++|+++|+.+|+.+|.|..+||.|.+.++|++| .+|.+|+|..+++.++.
T Consensus 84 qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l-~~~~~Gdvk~v~~~~~f 162 (351)
T KOG2741|consen 84 QHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELL-SSGVLGDVKSVEVEFGF 162 (351)
T ss_pred cHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHH-hccccccceEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 79999999999999888
Q ss_pred cCCcccccCccCcCCCCCCCcccccccchHHHHHHHH--ccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEE
Q 018020 165 AGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWA--NDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFS 242 (362)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l--~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~ 242 (362)
+.+....+..-|......|+|+++|+|+|.+-+..|. ++ .|.++........+..++++++.+++.|.+|..+.+.
T Consensus 163 ~~~~~~l~~~~r~~~~~~g~G~l~D~g~Y~i~~~~~~~~f~--~~p~~~~~~g~v~n~~~v~~s~~~~l~f~~~~~~~~~ 240 (351)
T KOG2741|consen 163 PFPEDELPHKSRLRTGLLGGGALGDLGIYPIQAALWVNNFQ--EPPEVIAVDGRVLNSEGVDDSVGAILDFTGGRTALIL 240 (351)
T ss_pred CcchhhcccccchheecccCceehhhHHHHHHHHHHHHHhc--CCcceeecCcccccCCCcccccceEEEeCCCceEEEE
Confidence 7765555555556666677899999999999999999 65 5667777755555677899999999999999999999
Q ss_pred EeeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHh
Q 018020 243 CSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVAN 322 (362)
Q Consensus 243 ~~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (362)
|++.........|.||+|++.+.|.+..+......+..... .|.. .+.+.+.........+..++..+..|
T Consensus 241 cSf~~~l~n~~~i~GtkG~~~l~d~~~p~~~~~~~~~~~~~--------~~~~-~p~~~~~~~~~n~~~m~~E~~~v~~~ 311 (351)
T KOG2741|consen 241 CSFLEKLTNEAVITGTKGSLKLLDYWIPTKETLSRFGGREK--------EFPL-LPGEDVDTHYDNEAGMVYEAERVREC 311 (351)
T ss_pred EehhhhCCCceEEEecccceeeeeccccceeeeeeecCCCc--------cccC-CCCCCcccccccchhhHHHHHHHHHH
Confidence 99999999999999999999999877666543222222211 2221 11122335556778899999999999
Q ss_pred hhcCCCCC-CCchHhHHHHHHHHHHHHHHHhhC
Q 018020 323 IKNGSKPE-QKWPIISRKTQLIIDAVKTSIERG 354 (362)
Q Consensus 323 i~~g~~~~-~~~~e~~l~~~~i~~a~~~S~~~g 354 (362)
|++|.... .-+..+.+.+|.|+|+++++...+
T Consensus 312 I~~~~~ea~~~~~~~S~~~~~i~D~i~~qi~v~ 344 (351)
T KOG2741|consen 312 IKKGGKEADDIPHAESLKLMLIVDAIRRQIGVV 344 (351)
T ss_pred HHhcCcCCCCCCchHHHHHHHHHHHHHHHhccc
Confidence 99655433 333455899999999999999877
No 5
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=99.98 E-value=2.7e-32 Score=240.21 Aligned_cols=330 Identities=16% Similarity=0.126 Sum_probs=237.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+. |||+|+|..++..+|.++..+ +++.|++.|.++.+.+.++.-+.+ ..++.++++|.++++|.|+|+.|+..|+
T Consensus 3 Pg-v~v~GTg~~arv~iP~l~e~~-f~v~A~w~Rt~~ea~a~aa~~~v~---~~t~~~deiLl~~~vdlv~i~lpp~~~~ 77 (367)
T KOG2742|consen 3 PG-VGVFGTGIFARVLIPLLKEEG-FEVKAIWGRTKTEAKAKAAEMNVR---KYTSRLDEILLDQDVDLVCISLPPPLHA 77 (367)
T ss_pred Cc-eeEeccChhHhhhhhhhhhcc-chHhhhhchhhhHHHHhhhccchh---hccccchhhhccCCcceeEeccCCccce
Confidence 66 999999999998899999997 999999999766666666666654 5677999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecCC
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGD 167 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~ 167 (362)
+++.+++.+||||+||||. .++.+++.+.+.+....+...+++++||.|.+..+|++| +++..|++..+..++.....
T Consensus 78 eI~~kal~~Gk~Vvcek~a-~~~d~~k~~~~~~~s~~L~~lv~~~lrflp~f~~~k~~i-e~i~~g~vv~~~~~v~~~~l 155 (367)
T KOG2742|consen 78 EIVVKALGIGKHVVCEKPA-TNLDAAKMVVALAYSPKLMSLVGHVLRFLPAFVTAKELI-EEIYVGEVVRCDVRVDRGRL 155 (367)
T ss_pred eeeeccccCCceEEeccCC-cchhhhhhHHHHhhchhHHHHhhhhhhhhHHHHHHHHHH-HhccCCCeeeeeeeeeccee
Confidence 9999999999999999998 999999999999999999999999999999999999999 89999999988887765432
Q ss_pred cccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeec--cccCCC--------CeeEeeEEEEEeCCCc
Q 018020 168 AEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHG--PVLNEA--------GVILSCGASLHWDDGR 237 (362)
Q Consensus 168 ~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~--~~~~~~--------~~~d~~~~~~~~~~G~ 237 (362)
-. ...+|+.++..+ ||.++++|+|.||+++.|+| .|-++.+-.. ...... ...+.+...+...+|.
T Consensus 156 ~~-k~~~W~~~p~~g-gG~l~d~Gsh~Idl~~~L~G--~~~~~~~gl~~~~~~~~~ei~g~~~I~~~~~~~~~~l~~~~i 231 (367)
T KOG2742|consen 156 FR-KSYNWKCDPLMG-GGFLYDMGSHLIDLLTSLLG--TPASVVHGLLSQRTRQPLEIEGIRRITLHDFCLFQMLPIGGI 231 (367)
T ss_pred cc-cCCccccccccC-CceeecchHHHHHHHHHHhC--CchhhhhhhhhhhccCchhhcccceeeecchhhhceeeccce
Confidence 11 124899888875 59999999999999999999 4555443321 111111 2334444455556888
Q ss_pred EEEEEEeeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHH
Q 018020 238 VATFSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFS 317 (362)
Q Consensus 238 ~~~~~~~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
+++...+.... ..++.|+|++|++...... . +............ .+. ....+.....+.-.....+++
T Consensus 232 ~~t~~l~~~~~-~~~~~I~Gs~Gt~~~~g~D---p-qE~~l~~~m~~~~----~~~---g~d~~~~Y~~g~~~~V~a~~~ 299 (367)
T KOG2742|consen 232 LSTVALSCGPG-FMEVRIVGSKGTLVVRGGD---P-QEEQLHGDMLPVS----EGG---GTDRPILYLKGTLWMVPAERD 299 (367)
T ss_pred EEeeecccCCc-ceEEEEEecCceEEEecCC---c-chhhhhccccccC----CCC---CccceeEeecCccccccHHHH
Confidence 87777776633 4789999999999998543 0 0101111100000 011 111111111111112344556
Q ss_pred HHHHhhhcCCC---C--CCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 318 RLVANIKNGSK---P--EQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 318 ~~~~~i~~g~~---~--~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
.|.....+... | ....-+|++....+.++++.|+++| +|+.|+
T Consensus 300 ~f~~~~s~ks~~~tp~~~~~~F~d~l~~a~V~~aie~s~k~g-q~~~Ve 347 (367)
T KOG2742|consen 300 AFHNPESTKSWVQTPVSMYATFEDGLYVACVVAAIESSAKNG-QVVAVE 347 (367)
T ss_pred hhcCCCCccccccccccchhhhhhhhHHHHHHHHHhcccCCC-ceEEee
Confidence 66554432111 1 1122356889999999999999999 999875
No 6
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=99.97 E-value=6.2e-29 Score=228.88 Aligned_cols=220 Identities=17% Similarity=0.189 Sum_probs=172.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEc--CCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLP--LPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~--~~~ 83 (362)
+++||||||+ .+|..|++.+++.+ +++++||||++++++++++++||++ .|+|++|++++.++|+|+|+ +|+
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~----~y~~~eell~d~Di~~V~ipt~~P~ 76 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVP----LYCEVEELPDDIDIACVVVRSAIVG 76 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCC----ccCCHHHHhcCCCEEEEEeCCCCCC
Confidence 4799999999 56999999999988 8999999999999999999999984 79999999988777888874 478
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCC----CccceEEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQ----RFGQLRTMH 159 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g----~iG~i~~i~ 159 (362)
..|++++++||++||||+||||++ .+|+++|+++|+++|++++++ ||+|.+..+|++| +++ .+|++..++
T Consensus 77 ~~H~e~a~~aL~aGkHVL~EKPla--~~Ea~el~~~A~~~g~~l~v~---~f~p~~~~vr~~i-~~~~~i~~~~~~~~i~ 150 (343)
T TIGR01761 77 GQGSALARALLARGIHVLQEHPLH--PRDIQDLLRLAERQGRRYLVN---TFYPHLPAVRRFI-EYARQLHHRRGPRFVE 150 (343)
T ss_pred ccHHHHHHHHHhCCCeEEEcCCCC--HHHHHHHHHHHHHcCCEEEEE---ecCHHHHHHHHHH-HcchhHhhcCCCCcce
Confidence 899999999999999999999997 799999999999999999984 6999999999999 778 667766666
Q ss_pred EEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEE
Q 018020 160 SCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~ 239 (362)
..++. +.+++. +|++.+++|...|.++.+.+. .. ....+-.+.+.. +|...
T Consensus 151 ~~~~~--------------------~v~~dl----ldil~~~lgg~~~~~i~~~~~-~~---~~~~f~~~~~~i-~~~p~ 201 (343)
T TIGR01761 151 ATCGV--------------------QVLYST----LDILARALGGVGPWSLESPGG-DL---SPFPMRGLQGVI-AGVPL 201 (343)
T ss_pred eecCC--------------------ccccch----HHHHHHHhCCCCceEEEeecc-cc---CCCCceEEEEEE-CCceE
Confidence 54321 444554 888888888334777777741 11 111233344444 45666
Q ss_pred EEEEeeee-CC--------ceeEEEEeccceEEEcc
Q 018020 240 TFSCSFLA-NM--------TMDITATGTNGSLQLHD 266 (362)
Q Consensus 240 ~~~~~~~~-~~--------~~~~~v~G~~G~i~~~~ 266 (362)
++...-.. +. -.++++..+.|++.+.+
T Consensus 202 ~l~~~n~l~~~dpD~~~~~~hri~~g~~~G~L~L~~ 237 (343)
T TIGR01761 202 SLNLQNYLDPADPDGHSLIMHRLSLGTPEGHLSLVS 237 (343)
T ss_pred EEEEecccCCCCCcchhhhheeEEEeccCcEEEEec
Confidence 66654222 22 12688888888888875
No 7
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.96 E-value=4.2e-29 Score=198.45 Aligned_cols=119 Identities=40% Similarity=0.628 Sum_probs=113.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||||||+|++|+.|++.+.+. +++++++++|+++++++.++++++++ .|+|++++++++++|+|+|+||+..|.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~D~V~I~tp~~~h~ 76 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP----VYTDLEELLADEDVDAVIIATPPSSHA 76 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE----EESSHHHHHHHTTESEEEEESSGGGHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc----chhHHHHHHHhhcCCEEEEecCCcchH
Confidence 6999999999999999888777 89999999999999999999999974 899999999988999999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
++++.++++|+||+||||++.+++++++|.++++++|+.++|||
T Consensus 77 ~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg~ 120 (120)
T PF01408_consen 77 EIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMVGY 120 (120)
T ss_dssp HHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE-
T ss_pred HHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 99999999999999999999999999999999999999999985
No 8
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.89 E-value=2.7e-22 Score=180.57 Aligned_cols=225 Identities=15% Similarity=0.153 Sum_probs=160.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|+++||||||+|.||+.|++.+.+ .+++++++++|+++++++.++++++.+ ..++|+++++++ +|+|++++|+.
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~---~~~~~~eell~~--~D~Vvi~tp~~ 78 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRP---PPVVPLDQLATH--ADIVVEAAPAS 78 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCC---cccCCHHHHhcC--CCEEEECCCcH
Confidence 568999999999999999999987 589999999999999999999999854 578999999864 89999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE--eeecccChhHHHHHHhhcCCCCccceEEEEEEe
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD--GTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCF 162 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v--~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~ 162 (362)
.|.+++..+|++||||+|++.. +++++++|.++++++|.++++ |+..++ +.| +.|.+|++..+....
T Consensus 79 ~h~e~~~~aL~aGk~Vi~~s~g--al~~~~~L~~~A~~~g~~l~v~sGa~~g~--------d~l-~~g~iG~~~~v~~~t 147 (271)
T PRK13302 79 VLRAIVEPVLAAGKKAIVLSVG--ALLRNEDLIDLARQNGGQIIVPTGALLGL--------DAV-TAAAEGTIHSVKMIT 147 (271)
T ss_pred HHHHHHHHHHHcCCcEEEecch--hHHhHHHHHHHHHHcCCEEEEcchHHHhH--------HHH-HHHHcCCceEEEEEE
Confidence 9999999999999999999643 556899999999999999998 444444 566 778999999887764
Q ss_pred eecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeecccc-CCCCeeEeeEEEEEeC----CCc
Q 018020 163 SFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVL-NEAGVILSCGASLHWD----DGR 237 (362)
Q Consensus 163 ~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~-~~~~~~d~~~~~~~~~----~G~ 237 (362)
.-+ +. .|+ |+.+.+...|++|.++ .|+.++-=..... ...+..-++.+.+-.. +..
T Consensus 148 rkp--p~----~~~-------g~~~~~~~~~dld~~~------~~~~~f~G~a~ea~~~fP~n~Nvaaa~ala~~g~d~t 208 (271)
T PRK13302 148 RKP--PD----GLK-------GAPFLVTNNIDIDGLT------EPLLLFEGSAREAAKGFPANLNVAVALSLAGIGPDRT 208 (271)
T ss_pred ecC--ch----Hhc-------cChhhhhcCCCccccc------cceEEEEecHHHHHHHCCcchhHHHHHHHhccCccce
Confidence 322 21 233 2454555667777432 2333322110000 0011111111111111 235
Q ss_pred EEEEEEeeeeCC-ceeEEEEeccceEEEc
Q 018020 238 VATFSCSFLANM-TMDITATGTNGSLQLH 265 (362)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~v~G~~G~i~~~ 265 (362)
.+.+...-.... ..++++.|+-|.+.++
T Consensus 209 ~v~l~adP~~~~n~H~i~~~g~~g~~~~~ 237 (271)
T PRK13302 209 TLEIWADPGVTRNVHRIEVDADSARFSMT 237 (271)
T ss_pred EEEEEECCCCCCceEEEEEEeceEEEEEE
Confidence 555555433333 4579999999999987
No 9
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.84 E-value=1.1e-20 Score=169.91 Aligned_cols=226 Identities=12% Similarity=0.041 Sum_probs=158.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||||||+|.||+.+++.+.+.|++++++++++... .++..+.++ .++.+++|++++ +.++|+|++++|+..|.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~--~~~~~~~d~~~l--~~~~DvVve~t~~~~~~ 75 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALG--EAVRVVSSVDAL--PQRPDLVVECAGHAALK 75 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhc--cCCeeeCCHHHh--ccCCCEEEECCCHHHHH
Confidence 3799999999999999999999999999999976432 222333332 124689999998 46899999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCC-HHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecC
Q 018020 88 KWAISVAQKKKHLLMEKPMALN-VAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG 166 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~-~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~ 166 (362)
+++.++|++||||+|+||.+.+ .+...+|.++|+++|+.+++ .+.+...+.++ +.+.+|.+..+.... ..
T Consensus 76 e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v------~sga~gg~d~l-~~~~~g~~~~v~~~~--~k 146 (265)
T PRK13303 76 EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL------LSGAIGGIDAL-AAAKEGGLDEVTYTG--RK 146 (265)
T ss_pred HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE------eChHhhCHHHH-HHHHhCCceEEEEEE--ec
Confidence 9999999999999999998765 66689999999999998876 45555667777 678889988888743 22
Q ss_pred CcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCC----CcEEEEE
Q 018020 167 DAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDD----GRVATFS 242 (362)
Q Consensus 167 ~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~----G~~~~~~ 242 (362)
++ .+|+..+.. ..+| +.++.+ +..-..+.........+...++.+.+.+.+ .+.+.+.
T Consensus 147 ~p----~~~~~~~~~-----------~~~d-l~~~~~--~~~~f~G~a~ea~~~~p~n~nvaaa~~la~~g~d~~~v~~~ 208 (265)
T PRK13303 147 PP----KSWRGTPAE-----------QLCD-LDALTE--PTVIFEGSAREAARLFPKNANVAATVALAGLGLDRTRVELI 208 (265)
T ss_pred Ch----hHhCcChhH-----------hccc-cccccc--CeEEEEeCHHHHHHHCCchhhHHHHHHHhccCccceEEEEE
Confidence 22 245544332 2466 666766 222222322111112344555555555542 2555565
Q ss_pred EeeeeC-CceeEEEEeccceEEEc
Q 018020 243 CSFLAN-MTMDITATGTNGSLQLH 265 (362)
Q Consensus 243 ~~~~~~-~~~~~~v~G~~G~i~~~ 265 (362)
..-... ...++++.|+-|.+.+.
T Consensus 209 adp~~~~n~h~i~~~g~~g~~~~~ 232 (265)
T PRK13303 209 ADPAVTRNVHEIEARGAFGEFEFE 232 (265)
T ss_pred ECCCCCCceEEEEEEeccEEEEEE
Confidence 543332 34579999999999987
No 10
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.82 E-value=6.3e-19 Score=158.28 Aligned_cols=140 Identities=19% Similarity=0.245 Sum_probs=124.8
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHHHhcC---CCCcEEEEcC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEALLDD---KDIDAVYLPL 81 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~~---~~~D~V~i~~ 81 (362)
|+++||||||+|.+|..|+..+.+.++++++++||+++++ ..++++++|++ ..++++++++++ +++|+|+++|
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~---~~~~~ie~LL~~~~~~dIDiVf~AT 78 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVA---TSAEGIDGLLAMPEFDDIDIVFDAT 78 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCC---cccCCHHHHHhCcCCCCCCEEEECC
Confidence 4689999999999999999988888999999999999874 44778899986 457999999987 7899999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMA--------LNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~--------~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
|+..|.+++.+++++|+||+++||.. .|.++. +...++.+..+.+.+..|.+..+++ + .++.+|
T Consensus 79 ~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~------~~~~~~~iia~p~~ati~~v~Al~~-v-~~~~~~ 150 (302)
T PRK08300 79 SAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH------LDAPNVNMVTCGGQATIPIVAAVSR-V-APVHYA 150 (302)
T ss_pred CHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHH------hcccCCCEEECccHHHHHHHHHhcc-c-CcCcee
Confidence 99999999999999999999999999 888865 3445678888999999999999999 7 778999
Q ss_pred ceE
Q 018020 154 QLR 156 (362)
Q Consensus 154 ~i~ 156 (362)
+|.
T Consensus 151 eIv 153 (302)
T PRK08300 151 EIV 153 (302)
T ss_pred eee
Confidence 988
No 11
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.82 E-value=2.4e-19 Score=184.31 Aligned_cols=175 Identities=21% Similarity=0.244 Sum_probs=146.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcE------------EEEEEcCCHHHHHHHHHHc-CCCCCCcc-cCCHHHHhcC-
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAV------------LSAVASRSLEKATNFAKAN-NFPPDAKV-YGSYEALLDD- 71 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~------------vv~v~d~~~~~~~~~~~~~-~~~~~~~~-~~~~~e~l~~- 71 (362)
++-||+|||+|.+|..|+..|.+.++++ +++|+|++.++++++++.+ ++. .+.+ +.|.+++++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~-~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE-AVQLDVSDSESLLKYV 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCc-eEEeecCCHHHHHHhh
Confidence 3569999999999999999998888876 7889999999999999887 532 1234 7888988863
Q ss_pred CCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHH--HHHhhcCC
Q 018020 72 KDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQ--MKEFVSDP 149 (362)
Q Consensus 72 ~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~--~k~~i~~~ 149 (362)
.++|+|++++|+..|.++++.|+++|||+++|| .+.+++++|.+.|+++|+++++++. |+|.+.. ++++| ++
T Consensus 647 ~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek---y~~~e~~~L~e~Ak~AGV~~m~e~G--lDPGid~~lA~~~I-d~ 720 (1042)
T PLN02819 647 SQVDVVISLLPASCHAVVAKACIELKKHLVTAS---YVSEEMSALDSKAKEAGITILCEMG--LDPGIDHMMAMKMI-DD 720 (1042)
T ss_pred cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc---CCHHHHHHHHHHHHHcCCEEEECCc--cCHHHHHHHHHHHH-Hh
Confidence 469999999999999999999999999999998 8899999999999999999999988 9999999 99999 77
Q ss_pred C--CccceEEEEEEeeecCCcccccCccCcCCCCCCCcccc
Q 018020 150 Q--RFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALG 188 (362)
Q Consensus 150 g--~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~ 188 (362)
+ ++|+|..++.++..-+.+++..+.|++...++.-|.|.
T Consensus 721 ~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~ 761 (1042)
T PLN02819 721 AHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIK 761 (1042)
T ss_pred hcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHH
Confidence 7 88999999999887665555555565554444434333
No 12
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.82 E-value=1.5e-19 Score=162.04 Aligned_cols=139 Identities=18% Similarity=0.231 Sum_probs=118.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHH-HHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKAT-NFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||||||+|.+|..|+..+.+.+++++++++|+++++.. ++++++|++ ..+++++++++++++|+|+++||+..|
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~---~~~~~~e~ll~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVK---TSAEGVDGLLANPDIDIVFDATSAKAH 77 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCC---EEECCHHHHhcCCCCCEEEECCCcHHH
Confidence 4799999999999999888877889999999999987644 678889986 568899999999899999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEE
Q 018020 87 VKWAISVAQKKKHLLMEKPMA--------LNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRT 157 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~--------~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~ 157 (362)
.+++.+++++||||+||||.+ .+.+++. +..++.+..+.+.+..|.+..++++. +.+ .++|+.
T Consensus 78 ~e~a~~al~aGk~VIdekPa~~~plvvp~VN~~~~~------~~~~~~iv~c~~~atip~~~al~r~~-d~~-~~~iv~ 148 (285)
T TIGR03215 78 ARHARLLAELGKIVIDLTPAAIGPYVVPAVNLDEHL------DAPNVNMVTCGGQATIPIVAAISRVA-PVH-YAEIVA 148 (285)
T ss_pred HHHHHHHHHcCCEEEECCccccCCccCCCcCHHHHh------cCcCCCEEEcCcHHHHHHHHHHHHhh-ccc-cEEEEE
Confidence 999999999999999999998 6755543 33467778888888999999999997 555 455443
No 13
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.81 E-value=4.4e-19 Score=159.56 Aligned_cols=142 Identities=22% Similarity=0.255 Sum_probs=125.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||||||+|.||..++..+.+.+ ++++++++|+++++++.++++++. ..++|+++++ .++|+|++++|+..|.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~----~~~~~~~ell--~~~DvVvi~a~~~~~~ 75 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGA----KACLSIDELV--EDVDLVVECASVNAVE 75 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCC----eeECCHHHHh--cCCCEEEEcCChHHHH
Confidence 69999999999999999988764 799999999999999999998874 4789999999 3699999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEee
Q 018020 88 KWAISVAQKKKHLLMEKPMAL-NVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~-~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
+++..++++||||+|++|.+. +.+.+++|.++|+++|+.+++. +.....++.| +.+.+|++..+.....
T Consensus 76 ~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~------sga~~g~d~i-~a~~~G~i~~V~~~~~ 145 (265)
T PRK13304 76 EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLP------SGAIVGLDGI-KAASLGEIKSVTLTTR 145 (265)
T ss_pred HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEe------CchHHhHHHH-HHHhcCCccEEEEEEe
Confidence 999999999999999999765 8889999999999999999872 3445557888 7889999998887654
No 14
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=99.81 E-value=7.2e-19 Score=153.35 Aligned_cols=120 Identities=16% Similarity=0.199 Sum_probs=110.8
Q ss_pred CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCC-CH
Q 018020 32 NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMAL-NV 110 (362)
Q Consensus 32 ~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~-~~ 110 (362)
++++++|||+++++++.+++++|+ .+|+|++++++ .++|+|++|+|+..|.+++.++|++||||+|+||.+. +.
T Consensus 1 ~~eLvaV~D~~~e~a~~~a~~~g~----~~~~d~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gAlad~ 75 (229)
T TIGR03855 1 NFEIAAVYDRNPKDAKELAERCGA----KIVSDFDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGALADR 75 (229)
T ss_pred CeEEEEEECCCHHHHHHHHHHhCC----ceECCHHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcccCCH
Confidence 478999999999999999999985 48999999998 4799999999999999999999999999999999988 78
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEee
Q 018020 111 AEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 111 ~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
+++++|.++++++|++++++ +.+...++.| +.+.+|.+..+.....
T Consensus 76 e~~~~l~~aA~~~g~~l~i~------sGai~g~d~l-~a~~ig~~~~V~i~~~ 121 (229)
T TIGR03855 76 ELRERLREVARSSGRKVYIP------SGAIGGLDAL-KAASLGRIERVVLTTT 121 (229)
T ss_pred HHHHHHHHHHHhcCCEEEEC------hHHHHHHHHH-HhcccCCceEEEEEEe
Confidence 99999999999999999997 4788889999 8999999999887644
No 15
>PRK06349 homoserine dehydrogenase; Provisional
Probab=99.80 E-value=4.6e-19 Score=169.66 Aligned_cols=145 Identities=21% Similarity=0.298 Sum_probs=123.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC---------CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP---------NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~---------~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
+++||||||+|.+|+.++..+.+++ ++++++|+|++.++.+.+ .. ++..+++|++++++++++|+|
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~----~~-~~~~~~~d~~~ll~d~~iDvV 76 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGV----DL-PGILLTTDPEELVNDPDIDIV 76 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCC----CC-cccceeCCHHHHhhCCCCCEE
Confidence 4899999999999998887775542 689999999998765422 21 223688999999999999999
Q ss_pred EEcCCC-cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccChhHHHHHHhhcCCCCccce
Q 018020 78 YLPLPT-SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM-DGTMWVHNPRTAQMKEFVSDPQRFGQL 155 (362)
Q Consensus 78 ~i~~~~-~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p~~~~~k~~i~~~g~iG~i 155 (362)
+.+|++ ..|.+++++||++||||+|++| +...+++++|.++|+++|+.++ .+...++.|.++.+++.+ ..+.||+|
T Consensus 77 ve~tg~~~~~~~~~~~aL~~GkhVVtaNK-~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l-~~~~I~~I 154 (426)
T PRK06349 77 VELMGGIEPARELILKALEAGKHVVTANK-ALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGL-AANRITRV 154 (426)
T ss_pred EECCCCchHHHHHHHHHHHCCCeEEEcCH-HHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhc-ccCCeeEE
Confidence 999876 5789999999999999999988 6788999999999999999765 578888999999999999 88888887
Q ss_pred EEE
Q 018020 156 RTM 158 (362)
Q Consensus 156 ~~i 158 (362)
..|
T Consensus 155 ~GI 157 (426)
T PRK06349 155 MGI 157 (426)
T ss_pred EEE
Confidence 754
No 16
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.78 E-value=3.4e-18 Score=159.17 Aligned_cols=148 Identities=18% Similarity=0.237 Sum_probs=122.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC---------CcEEEEEEcC----------CHHHHHHHHHHcCCCCC---CcccCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP---------NAVLSAVASR----------SLEKATNFAKANNFPPD---AKVYGSY 65 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~---------~~~vv~v~d~----------~~~~~~~~~~~~~~~~~---~~~~~~~ 65 (362)
++||+|+|+|.+|+.+++.+.+.+ +++|++++|+ +.+++..++++++.... ...+.|+
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 699999999999999998887653 7999999995 45667777777663211 1123599
Q ss_pred HHHhcCCCCcEEEEcCCCccc-----HHHHHHHHHcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccCh
Q 018020 66 EALLDDKDIDAVYLPLPTSMH-----VKWAISVAQKKKHLLME--KPMALNVAEFDVILNACEENGVQLM-DGTMWVHNP 137 (362)
Q Consensus 66 ~e~l~~~~~D~V~i~~~~~~h-----~~~~~~al~~gk~V~~E--KP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p 137 (362)
+++++++++|+|+++||+..| .+++..||++||||+|+ ||++.+. .+|.++|+++|+.++ .+...++.|
T Consensus 82 ~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~---~eL~~~A~~~g~~~~~ea~v~~glP 158 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAY---KELKELAKKNGVRFRYEATVGGAMP 158 (341)
T ss_pred HHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhH---HHHHHHHHHcCCEEEEeeeeeechh
Confidence 999998899999999999887 78999999999999996 8988765 578999999999886 488899999
Q ss_pred hHHHHHHhhcCCCCccceEEEE
Q 018020 138 RTAQMKEFVSDPQRFGQLRTMH 159 (362)
Q Consensus 138 ~~~~~k~~i~~~g~iG~i~~i~ 159 (362)
.++.+|+++ ..+.||+|..|-
T Consensus 159 ii~~l~~~l-~g~~I~~I~GIl 179 (341)
T PRK06270 159 IINLAKETL-AGNDIKSIKGIL 179 (341)
T ss_pred HHHHHHhhc-ccCceEEEEEEE
Confidence 999999998 777787765543
No 17
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.77 E-value=2.8e-18 Score=153.72 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=124.7
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+|||+|||+ |.||+.++..+.+.+++++++++|+++++.... .++++ ..++|++++++ ++|+|+.+|||..|
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~~~i----~~~~dl~~ll~--~~DvVid~t~p~~~ 73 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GALGV----AITDDLEAVLA--DADVLIDFTTPEAT 73 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CCCCc----cccCCHHHhcc--CCCEEEECCCHHHH
Confidence 479999998 999999999998888999999999988766554 44443 57899999997 59999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc--ceEEEEEE
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG--QLRTMHSC 161 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG--~i~~i~~~ 161 (362)
.+++..|+++|+||+++ |.+.+.+++++|.+++++.++.+..++..+.....+.+++.. +.+| +|..++.+
T Consensus 74 ~~~~~~al~~G~~vvig-ttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~~aa---~~l~~~d~ei~E~H 146 (257)
T PRK00048 74 LENLEFALEHGKPLVIG-TTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAEKAA---KYLGDYDIEIIEAH 146 (257)
T ss_pred HHHHHHHHHcCCCEEEE-CCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHHHHH---HhcCCCCEEEEEcc
Confidence 99999999999999999 889999999999997777888888999999999999999887 5788 55555554
No 18
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=99.72 E-value=1.4e-16 Score=144.50 Aligned_cols=187 Identities=15% Similarity=0.121 Sum_probs=127.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+++||+|||+|.+|+.+++.+.+.|+++|++++|+++ +++. +..+. ....+.++++ .++|+|++|+|+..
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~~~v----~~~~d~~e~l--~~iDVViIctPs~t 72 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TETPV----YAVADDEKHL--DDVDVLILCMGSAT 72 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hcCCc----cccCCHHHhc--cCCCEEEEcCCCcc
Confidence 3799999999999999999999999999999999985 3322 32332 2345666666 46999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCH-HHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNV-AEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~-~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
|.+++..+|++|+||+++||...+. +..++|.++|+++|....++ ..++|.+..+++++ .+..+=+=. .|+.
T Consensus 73 h~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~--~GwDPG~~si~r~~-~ea~lp~g~----~yt~ 145 (324)
T TIGR01921 73 DIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS--TGWDPGMFSINRVY-GEAVLPKGQ----TYTF 145 (324)
T ss_pred CHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE--CCCCcChHHHHHHH-HhccCCCCc----ceec
Confidence 9999999999999999999987764 55666777777666555544 68999999999998 544332211 1222
Q ss_pred cCCcccccCccCcCCCCCCC--cccccccchHHHHHHHHc-cCCCCcEEEEee
Q 018020 165 AGDAEFLKNDIRVKPDLDGL--GALGDAGWYGIRSILWAN-DYELPKTVIAMH 214 (362)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~gg--g~l~~~g~h~id~~~~l~-g~~~~~~V~a~~ 214 (362)
+++.-....++-.+.. .|. +..+ -+..+|.+.+.+ | ++.++++..
T Consensus 146 wG~g~s~ghs~a~~~~-~Gv~~a~~~--tip~~dal~~v~~G--e~~~l~~~~ 193 (324)
T TIGR01921 146 WGPGLSQGHSDAVRRI-DGVKKAVQY--TLPSEDALEKARRG--EAPELTGKQ 193 (324)
T ss_pred cCCCcCchhhhhhccc-CCcccceEE--EEehHHHHHHHHcC--Ccccccccc
Confidence 1111000011111111 121 1233 334788999988 6 566777764
No 19
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.70 E-value=2.1e-16 Score=142.12 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=102.4
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcC-CHHH-HHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASR-SLEK-ATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~-~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|||+|+| +|.||+.++..+.+.|++++++++|+ +++. .+..++..+.. .++.+++|++++ . .++|+|+.+|+|.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l-~-~~~DvVIdfT~p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV-E-TDPDVLIDFTTPE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh-c-CCCCEEEECCChH
Confidence 7999999 69999999999998999999999995 3332 12233332321 234678999999 3 4699999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWV 134 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r 134 (362)
.|.+++..|+++|+||+|+|| +.+.+++++|.++|+++|++++++.|+-
T Consensus 80 ~~~~~~~~al~~g~~vVigtt-g~~~e~~~~l~~aA~~~g~~v~~a~NfS 128 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVGTT-GFSEEDKQELADLAEKAGIAAVIAPNFS 128 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHHhcCCccEEEECccc
Confidence 999999999999999999999 8899999999999999999888876654
No 20
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=99.67 E-value=9.2e-15 Score=135.02 Aligned_cols=211 Identities=12% Similarity=0.132 Sum_probs=157.6
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCC-CcEEEEEE-cCCHHHHHHHHHHcCCCCCCcc------------------------
Q 018020 9 IRFGIIG-AADIARKLSRAITLAP-NAVLSAVA-SRSLEKATNFAKANNFPPDAKV------------------------ 61 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~-~~~vv~v~-d~~~~~~~~~~~~~~~~~~~~~------------------------ 61 (362)
.||+|+| +|++|..++..++++| .++|++++ +++.+++.+.+++|+.. ..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~--~v~i~~~~~~~~l~~~l~~~~~~v~~G 79 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPK--YVVVADEEAAKELKEALAAAGIEVLAG 79 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCC--EEEEcCHHHHHHHHHhhccCCceEEEC
Confidence 4799999 8999999999999887 59999998 99999999999998732 111
Q ss_pred cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEE-eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH
Q 018020 62 YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLM-EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA 140 (362)
Q Consensus 62 ~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~-EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 140 (362)
.+.+.++++.+++|+|+++++...|.+.+..|+++||+|.+ +|+.-+ ..+..+.++++++|..+..= .+...
T Consensus 80 ~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV--~aG~~i~~~a~~~g~~i~PV-----DSEh~ 152 (385)
T PRK05447 80 EEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLV--CAGELVMDAAKKSGAQILPV-----DSEHS 152 (385)
T ss_pred hhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHH--hhHHHHHHHHHHcCCeEEEE-----CHHHH
Confidence 12455667778899999999999999999999999999999 999644 88889999999998776532 88899
Q ss_pred HHHHhhcCCCCccceEEEEEEeeecCCcc--------------cccCccCcCCCCCC-CcccccccchHHHHHHHHccCC
Q 018020 141 QMKEFVSDPQRFGQLRTMHSCFSFAGDAE--------------FLKNDIRVKPDLDG-LGALGDAGWYGIRSILWANDYE 205 (362)
Q Consensus 141 ~~k~~i~~~g~iG~i~~i~~~~~~~~~~~--------------~~~~~w~~~~~~~g-gg~l~~~g~h~id~~~~l~g~~ 205 (362)
.+++++ +.+...+|..+-..-+..+... -..++|..-+...- .--|.|-|.|.|+ ..||||.
T Consensus 153 ai~q~l-~~~~~~~i~~iilTASGGpFr~~~~~~l~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IE-A~~Lf~~- 229 (385)
T PRK05447 153 AIFQCL-PGEKQEGVEKIILTASGGPFRDWPLEELANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIE-AHWLFGL- 229 (385)
T ss_pred HHHHHh-cCCCccccceEEEecCCCcccCCCHHHHhcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHh-HHHHcCC-
Confidence 999999 6663223444433322211110 01245655333322 1357888999999 9999995
Q ss_pred CCcEEEEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 206 LPKTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 206 ~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
+++++.....+ ....+.+++|.||.+
T Consensus 230 ~~~~I~vvIHp-------qSivHsmVef~DGsv 255 (385)
T PRK05447 230 PYEQIEVVIHP-------QSIIHSMVEYVDGSV 255 (385)
T ss_pred ChhhEEEEECC-------cCceeEEEEEeCCcE
Confidence 47888888432 236788999999875
No 21
>PF02894 GFO_IDH_MocA_C: Oxidoreductase family, C-terminal alpha/beta domain; InterPro: IPR004104 Enzymes containing this domain utilise NADP or NAD, and are known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, C-terminal domain is almost always associated with the oxidoreductase, N-terminal domain (see IPR000683 from INTERPRO).; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3IP3_E 3DTY_B 3Q2I_A 2P2S_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A 3NT2_A 3NT4_A ....
Probab=99.30 E-value=5.6e-12 Score=98.44 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=79.4
Q ss_pred HHhhcCCCCccceEEEEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeec--cccCC
Q 018020 143 KEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHG--PVLNE 220 (362)
Q Consensus 143 k~~i~~~g~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~--~~~~~ 220 (362)
|++| ++|.||+|..+++.+.......+....|+..+ ..+||.+.|+|+|.+|+++|++|. +++.+.+... .....
T Consensus 1 KelI-~~g~iG~v~~v~~~~~~~~~~~~~~~~~~~~~-~~~gG~l~d~g~H~id~~~~l~G~-~~~~~~~~~~~~~~~~~ 77 (115)
T PF02894_consen 1 KELI-EEGEIGKVRSVQGEFRFYRAPRPPRWRWRRDP-EAGGGALLDLGIHQIDLVRWLFGS-PPTVVAAAGGQRQLPEA 77 (115)
T ss_dssp HHHH-HTTTTSSEEEEEEEEEEEEBHTHHHHSGGGSH-HTTTSHHHHTHHHHHHHHHHHHTS-EEEEEEEEEESESSTTT
T ss_pred Chhh-cCCCCCCEEEEEEeeecccccCCccccccccc-cCCceEEEeehhHHHHHHHHHhCC-CcEEEEEEEeccccCCC
Confidence 7889 89999999999986665444333333344443 345699999999999999999994 4666666642 22334
Q ss_pred CCeeEee--EEEEEeCCCcEEEEEEeeeeCCceeEEE
Q 018020 221 AGVILSC--GASLHWDDGRVATFSCSFLANMTMDITA 255 (362)
Q Consensus 221 ~~~~d~~--~~~~~~~~G~~~~~~~~~~~~~~~~~~v 255 (362)
....+.. .+.+.+.+|.++++++++..+...++.+
T Consensus 78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (115)
T PF02894_consen 78 QEDEDAADRFANFEFGSGAVATLTASFNNGYKIRYII 114 (115)
T ss_dssp TSSESEEEEEEEEEETTEEEEEEEEESSSSEEEEEEE
T ss_pred CCccccceEEEEEEeCCEEEEEEEEcccCCCCCEEEE
Confidence 4566666 7899999999999998887766555443
No 22
>PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases.
Probab=99.30 E-value=1.5e-11 Score=93.98 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=87.0
Q ss_pred ccChhHHHHHHhhcCCCCccceEEEEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEe
Q 018020 134 VHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAM 213 (362)
Q Consensus 134 r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~ 213 (362)
||.+.+|++|++| ++..+ ++....++|......-.. ..|| +...+| |.+.+.++|.+|++|++.|.-+..+|.+.
T Consensus 1 RYl~~vq~~K~ii-~en~l-~vm~~~aRY~~ay~~~~K-~~WW-~ks~sg-GpiVEQaTHfcDL~RYfgGeVdldtV~a~ 75 (142)
T PF08635_consen 1 RYLKAVQKMKQII-KENNL-PVMATNARYNCAYEHIAK-PFWW-NKSKSG-GPIVEQATHFCDLSRYFGGEVDLDTVQAH 75 (142)
T ss_pred CchHHHHHHHHHH-HhcCC-ceEEEEeeeeeehhccCC-chhh-hhcccC-CCeeeehhhHHHHHHHhcCceeeeeEEEE
Confidence 8999999999999 55544 788888888765543222 2344 446666 99999999999999999996556678877
Q ss_pred e-----------------ccccCCCCeeEeeEEEEEeCCCcEEEEEEeeee---CCceeEEEEec
Q 018020 214 H-----------------GPVLNEAGVILSCGASLHWDDGRVATFSCSFLA---NMTMDITATGT 258 (362)
Q Consensus 214 ~-----------------~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~~---~~~~~~~v~G~ 258 (362)
. ...+.+..++...+++++|++|+++++...... .+..+++|+++
T Consensus 76 sve~~e~~g~LskipvdEs~Ip~e~RiPR~T~A~Wky~sGAVGsl~H~~~LqG~~y~telev~aD 140 (142)
T PF08635_consen 76 SVEWDEPPGKLSKIPVDESKIPPENRIPRATSATWKYKSGAVGSLTHALALQGTNYSTELEVYAD 140 (142)
T ss_pred eccccCCCCcCCCCCcCcccCChhhcCcceeeeEEEeccCceehhhhhhhccccccceEEEEecc
Confidence 5 112223356677889999999999999866443 33456666655
No 23
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=99.24 E-value=6.9e-12 Score=109.40 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=82.6
Q ss_pred ceeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.+.||+|||+|.+|..+++.+. ..+++++++++|+++++...... +++ +..++++.+++...++|.|+|++|+..
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~--g~~--v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG--GIP--VYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC--CeE--EcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 4689999999999998877642 34579999999998766543221 221 234578889988788999999999999
Q ss_pred cHHHHHHHHHcC-CeEEEeCCCCCCHHH
Q 018020 86 HVKWAISVAQKK-KHLLMEKPMALNVAE 112 (362)
Q Consensus 86 h~~~~~~al~~g-k~V~~EKP~~~~~~~ 112 (362)
|.+++..++++| ++|+|+||+..++.+
T Consensus 159 ~~~i~~~l~~~Gi~~il~~~p~~~~v~~ 186 (213)
T PRK05472 159 AQEVADRLVEAGIKGILNFAPVRLSVPE 186 (213)
T ss_pred HHHHHHHHHHcCCCEEeecCceeecCCC
Confidence 999999999999 799999999998874
No 24
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.20 E-value=1.5e-10 Score=107.77 Aligned_cols=97 Identities=21% Similarity=0.303 Sum_probs=82.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--------------CCCcccCCHHHHhcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--------------PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--------------~~~~~~~~~~e~l~~~~ 73 (362)
++||||+|+|.||+.+++.+..+|+++|++++|++++....+++++|.+ .+..++.++++++. +
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~--~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE--K 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc--c
Confidence 4899999999999999999999999999999999887777777755421 12345678888885 4
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCC
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPM 106 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~ 106 (362)
+|+|+.+||+..|.+.+..++++|++|+.--|.
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHHCCCEEEEcCCC
Confidence 999999999999999999999999999987764
No 25
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=99.17 E-value=6.3e-10 Score=93.96 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=108.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|+|||||||.+|+.....+++-+ .++++++||++.++++.+.+.++.+ +.++++|++. ++|+++=|..+..-.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~--~~DlvVEaAS~~Av~ 74 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIA--EVDLVVEAASPEAVR 74 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhh--ccceeeeeCCHHHHH
Confidence 57999999999999999998764 6999999999999999998888753 4599999994 699999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEE
Q 018020 88 KWAISVAQKKKHLLMEKPMAL-NVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSC 161 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~-~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~ 161 (362)
+++.++|++|++|++=.=-+. +..-..++.++|+..+..+++-+-.-- ....+ .+-..|.|.++...
T Consensus 75 e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiG--GlD~l-----~aar~g~i~~V~lt 142 (255)
T COG1712 75 EYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIG--GLDAL-----AAARVGGIEEVVLT 142 (255)
T ss_pred HHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccch--hHHHH-----HHhhcCCeeEEEEE
Confidence 999999999999987543344 455566677888888888865322211 22233 23355777776654
No 26
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.15 E-value=7.9e-10 Score=95.86 Aligned_cols=129 Identities=21% Similarity=0.326 Sum_probs=110.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC----
Q 018020 9 IRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT---- 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~---- 83 (362)
-+|.|.|+-+ |..++.++... |+++++|+-....+|.++++..+|+| .|.+.+|+-++ +|+.+|....
T Consensus 5 ksVvV~GtrF-Gq~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh~~GVp----ly~~~eelpd~--idiACVvVrsai~G 77 (361)
T COG4693 5 KSVVVCGTRF-GQFYLAAFAAAPPRFELAGILAQGSERSRALAHRLGVP----LYCEVEELPDD--IDIACVVVRSAIVG 77 (361)
T ss_pred ceEEEecchH-HHHHHHHhccCCCCceeehhhhcccHHHHHHHHHhCCc----cccCHhhCCCC--CCeEEEEEeeeeec
Confidence 3899999876 88888888766 78999999999999999999999986 89999999987 7766665444
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
..-.++++..|++|.||+.|.|+ ...+..++.++|++.|+.+.||.-+-+.|..++..+..
T Consensus 78 g~Gs~larall~RGi~VlqEHPl--~p~di~~l~rlA~rqG~~y~vNTfYPhlpA~rrfi~~~ 138 (361)
T COG4693 78 GQGSALARALLARGIHVLQEHPL--HPRDIQDLLRLAERQGRRYLVNTFYPHLPAVRRFIEYA 138 (361)
T ss_pred CCcHHHHHHHHHcccHHHHhCCC--CHHHHHHHHHHHHHhCcEEEEeccCCCcHHHHHHHHHH
Confidence 35688999999999999999996 67899999999999999999998888888877655544
No 27
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=99.12 E-value=1.6e-09 Score=95.31 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=102.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||||||||.||+..+..+.. .+++++++|+++++++.+.+++. +.+++|+++++.. ++|+|+=|-.+..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~------~~~~~~l~~ll~~-~~DlVVE~A~~~a 74 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR------VALLDGLPGLLAW-RPDLVVEAAGQQA 74 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc------CcccCCHHHHhhc-CCCEEEECCCHHH
Confidence 4899999999999999988865 34699999999999888888764 2589999999764 6999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 86 HVKWAISVAQKKKHLLMEKPMAL-NVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~-~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
-.+++..+|++|+++++=.+-+. |.+-.++|.++|+++|.++++-.=.
T Consensus 75 v~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 75 IAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred HHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChH
Confidence 99999999999999998776665 6778889999999999998875443
No 28
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.10 E-value=3.2e-10 Score=90.00 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=87.4
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHH-H-HHHHHHHcCC-CCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLE-K-ATNFAKANNF-PPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~-~-~~~~~~~~~~-~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|||+|+|+ |.||+..+..+.+.++++|++++|++.+ . .+.+.+-.+. +.++.+++|++++++. +|+|+-+|.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~--~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE--ADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH---SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--CCEEEEcCChH
Confidence 79999999 9999999999999999999999999862 1 1112222221 2345789999999997 99999999888
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
.-.+.+..|+++|+++.+-.. +.+.++.++|.+++++ +.+...
T Consensus 79 ~~~~~~~~~~~~g~~~ViGTT-G~~~~~~~~l~~~a~~--~~vl~a 121 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIGTT-GFSDEQIDELEELAKK--IPVLIA 121 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE-S-SSHHHHHHHHHHHTTT--SEEEE-
T ss_pred HhHHHHHHHHhCCCCEEEECC-CCCHHHHHHHHHHhcc--CCEEEe
Confidence 889999999999999998543 4577888888888877 444433
No 29
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.08 E-value=2.8e-09 Score=99.13 Aligned_cols=150 Identities=15% Similarity=0.249 Sum_probs=109.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhc--------CC-CcEEEEEEcCC----------HHHHHHHHHHcCCCCCC----cc-cC
Q 018020 8 AIRFGIIGAADIARKLSRAITL--------AP-NAVLSAVASRS----------LEKATNFAKANNFPPDA----KV-YG 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~--------~~-~~~vv~v~d~~----------~~~~~~~~~~~~~~~~~----~~-~~ 63 (362)
++||+|+|+|..|...++.+.+ .. +++|++|+|++ .+++.+..++.+..... .. ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 5999999999999987777654 21 48999999854 33344444444321100 00 12
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEE-EeC-CCCCCHHHHHHHHHHHHHcCCEEEEeeec-ccChhHH
Q 018020 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLL-MEK-PMALNVAEFDVILNACEENGVQLMDGTMW-VHNPRTA 140 (362)
Q Consensus 64 ~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~-~EK-P~~~~~~~~~~l~~~a~~~~~~~~v~~~~-r~~p~~~ 140 (362)
++++++++.++|+|+-++++..+.++..+++++|+||. ..| |++. ..++|.++++++|+.+....+. ---|.+.
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~---~~~el~~la~~~~~~~~~ea~v~~GiPii~ 158 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAF---HYDELLDLANERNLPYLFEATVMAGTPIIG 158 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHh---CHHHHHHHHHHcCCeEEEeccccccCCchH
Confidence 78899987789999999999999999999999999988 777 7774 4447777888899888755433 3689999
Q ss_pred HHHHhhcCCCCccceEEEEEEeee
Q 018020 141 QMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 141 ~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.+++.+ . | -+|..++..++.
T Consensus 159 ~l~~~l-~-g--~~i~~i~GIlnG 178 (336)
T PRK08374 159 LLRENL-L-G--DTVKRIEAVVNA 178 (336)
T ss_pred HHHhhc-c-c--cceEEEEEEEec
Confidence 999887 3 2 367777776653
No 30
>PRK08618 ornithine cyclodeaminase; Validated
Probab=99.04 E-value=5.3e-10 Score=103.84 Aligned_cols=124 Identities=21% Similarity=0.209 Sum_probs=91.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----CCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----NFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.-+++|||+|.+|..++..+....+++.+.++++++++++++++++ +++ +..++++++++.+ .|+|+.+||.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~--aDiVi~aT~s 202 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE--IYVVNSADEAIEE--ADIIVTVTNA 202 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc--EEEeCCHHHHHhc--CCEEEEccCC
Confidence 4579999999999999988876668888999999999999988754 432 3568999999964 9999999997
Q ss_pred cccHHHHHHHHHcCCeE---------EEeCCCCCCHHHHHHHH-----HHHHHcCCEEEEeeecccChh
Q 018020 84 SMHVKWAISVAQKKKHL---------LMEKPMALNVAEFDVIL-----NACEENGVQLMDGTMWVHNPR 138 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V---------~~EKP~~~~~~~~~~l~-----~~a~~~~~~~~v~~~~r~~p~ 138 (362)
. |+.+. ..++.|+|| ..|+|. ..+..+..+. +.+++.|-.......-++.+.
T Consensus 203 ~-~p~i~-~~l~~G~hV~~iGs~~p~~~E~~~-~~~~~a~~vvvD~~~~~~~e~G~~~~~~~~~~~~~~ 268 (325)
T PRK08618 203 K-TPVFS-EKLKKGVHINAVGSFMPDMQELPS-EAIARANKVVVESKEAALEETGDLIVPLKEGLISKD 268 (325)
T ss_pred C-CcchH-HhcCCCcEEEecCCCCcccccCCH-HHHhhCCEEEECCHHHHHHhcCCcccHHHcCCCChh
Confidence 6 88888 999999999 578875 2344443332 344556655443333344433
No 31
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.01 E-value=1.1e-08 Score=91.34 Aligned_cols=105 Identities=16% Similarity=0.246 Sum_probs=78.3
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcC-CHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP--NAVLSAVASR-SLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|+.+||+|||+|.||..++..+.+.+ ..+.+.++++ ++++++.+++++++ ..++++++++++ .|+|++++|
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~DiViiavp 75 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNV----STTTDWKQHVTS--VDTIVLAMP 75 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCc----EEeCChHHHHhc--CCEEEEecC
Confidence 45789999999999999999886653 3442335554 67889999888875 467899999874 999999999
Q ss_pred CcccHHHHHHHHH--cCCeEEEeCCCCCCHHHHHHHH
Q 018020 83 TSMHVKWAISVAQ--KKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 83 ~~~h~~~~~~al~--~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
+..|.+++..... .++ +++=-.-+.+.+..++..
T Consensus 76 ~~~~~~v~~~l~~~~~~~-~vis~~~gi~~~~l~~~~ 111 (245)
T PRK07634 76 PSAHEELLAELSPLLSNQ-LVVTVAAGIGPSYLEERL 111 (245)
T ss_pred HHHHHHHHHHHHhhccCC-EEEEECCCCCHHHHHHHc
Confidence 9999998876542 244 444335567777766654
No 32
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.99 E-value=7.1e-09 Score=96.68 Aligned_cols=150 Identities=14% Similarity=0.169 Sum_probs=110.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--CC---CCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--FP---PDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~~---~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
++||.|||+|.+|+..+..+.+....+|. ++||+.+++++++...+ +. .++.-.+.+.++|++ .|+|+.+.|
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~--~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKD--FDLVINAAP 77 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhc--CCEEEEeCC
Confidence 36899999999999988887766557765 88999999998876642 21 122233466678886 599999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc-ceEEEEEE
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG-QLRTMHSC 161 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG-~i~~i~~~ 161 (362)
+..+..+++.|+++|.|++- .+...+...++.+.|+++|+..+.+. -|.|.+..+-..- ....+. +|.++.+.
T Consensus 78 ~~~~~~i~ka~i~~gv~yvD---ts~~~~~~~~~~~~a~~Agit~v~~~--G~dPGi~nv~a~~-a~~~~~~~i~si~iy 151 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVD---TSYYEEPPWKLDEEAKKAGITAVLGC--GFDPGITNVLAAY-AAKELFDEIESIDIY 151 (389)
T ss_pred chhhHHHHHHHHHhCCCEEE---cccCCchhhhhhHHHHHcCeEEEccc--CcCcchHHHHHHH-HHHHhhccccEEEEE
Confidence 99999999999999999874 44444445899999999998887653 4688776333221 112345 78888888
Q ss_pred eeecC
Q 018020 162 FSFAG 166 (362)
Q Consensus 162 ~~~~~ 166 (362)
....+
T Consensus 152 ~g~~g 156 (389)
T COG1748 152 VGGLG 156 (389)
T ss_pred EecCC
Confidence 77544
No 33
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.98 E-value=1.4e-09 Score=101.55 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=72.3
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCC-CcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPD-AKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~-~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
++||+|||+ |.+|+.+++.+.++|++++++++++. ++.+.+++.++ +... ...++++++. ...++|+|++|+|+.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE-ILAGADVVFLALPHG 79 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH-HhcCCCEEEECCCcH
Confidence 489999997 99999999999999999999999853 34444544443 2100 1246666665 335799999999999
Q ss_pred ccHHHHHHHHHcCCeEEE
Q 018020 85 MHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~ 102 (362)
.|.+++.+++++|+||+-
T Consensus 80 ~~~~~v~~a~~aG~~VID 97 (343)
T PRK00436 80 VSMDLAPQLLEAGVKVID 97 (343)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 999999999999999884
No 34
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.97 E-value=9.3e-09 Score=85.85 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=86.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
++|||+||+|.||...+..|.+. +++|. ++|+++++++++.++ | ....+|+.|+++. .|+|++++|+....
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~-g~~v~-~~d~~~~~~~~~~~~-g----~~~~~s~~e~~~~--~dvvi~~v~~~~~v 71 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA-GYEVT-VYDRSPEKAEALAEA-G----AEVADSPAEAAEQ--ADVVILCVPDDDAV 71 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT-TTEEE-EEESSHHHHHHHHHT-T----EEEESSHHHHHHH--BSEEEE-SSSHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc-CCeEE-eeccchhhhhhhHHh-h----hhhhhhhhhHhhc--ccceEeecccchhh
Confidence 36899999999999999999877 78865 799999999999876 3 3689999999986 79999999998776
Q ss_pred HHHHHH---HHc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 88 KWAISV---AQK--KKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 88 ~~~~~a---l~~--gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
+-+... +.. ...++++-- +.+++..+++.+.++++|+.+..+-.
T Consensus 72 ~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 72 EAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp HHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhccceeeeeee
Confidence 555443 321 235666643 66899999999999999977665443
No 35
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.96 E-value=2.9e-09 Score=83.74 Aligned_cols=110 Identities=24% Similarity=0.337 Sum_probs=84.3
Q ss_pred eccHHHHHHHHHHhcCC---CcEEEEEEcCCHHHHH-HHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHH
Q 018020 15 GAADIARKLSRAITLAP---NAVLSAVASRSLEKAT-NFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWA 90 (362)
Q Consensus 15 G~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~ 90 (362)
|+|.+|+..+..+.+.. ++++++|++++ .... ......+ +...+++++++++..++|+|+=++++..-.+++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~ 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP---DEAFTTDLEELIDDPDIDVVVECTSSEAVAEYY 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT---HSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc---cccccCCHHHHhcCcCCCEEEECCCchHHHHHH
Confidence 89999999999998775 89999999998 1100 0111111 125789999999977799999999999999999
Q ss_pred HHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 91 ISVAQKKKHLLME-K-PMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 91 ~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
..+|++|+||++= | |++ +....++|.++|+++|+.++.
T Consensus 77 ~~~L~~G~~VVt~nk~ala-~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 77 EKALERGKHVVTANKGALA-DEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HHHHHTTCEEEES-HHHHH-SHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHCCCeEEEECHHHhh-hHHHHHHHHHHHHHcCCEEEe
Confidence 9999999998853 2 666 889999999999999998863
No 36
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.96 E-value=7.8e-09 Score=78.23 Aligned_cols=86 Identities=26% Similarity=0.322 Sum_probs=70.7
Q ss_pred EEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-CHHHHhcCCCCcEEEEcCCCccc
Q 018020 10 RFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYG-SYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
||+|||+|.||...+..+.+.. ..++..+++++++++++++++++. .++. +..++++. .|+|++++|+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~--advvilav~p~~~ 74 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGV----QATADDNEEAAQE--ADVVILAVKPQQL 74 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTT----EEESEEHHHHHHH--TSEEEE-S-GGGH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcc----ccccCChHHhhcc--CCEEEEEECHHHH
Confidence 7999999999999999987773 377776779999999999999984 3555 89999994 9999999999999
Q ss_pred HHHHHHH--HHcCCeEE
Q 018020 87 VKWAISV--AQKKKHLL 101 (362)
Q Consensus 87 ~~~~~~a--l~~gk~V~ 101 (362)
.+++... +..++.|+
T Consensus 75 ~~v~~~i~~~~~~~~vi 91 (96)
T PF03807_consen 75 PEVLSEIPHLLKGKLVI 91 (96)
T ss_dssp HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhhccCCCEEE
Confidence 8888776 56676665
No 37
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.89 E-value=1.1e-08 Score=91.75 Aligned_cols=124 Identities=22% Similarity=0.311 Sum_probs=97.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-------------------CCcccCCHH
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-------------------DAKVYGSYE 66 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 66 (362)
.+++|||+||+|.||...+.....+|+++++++.|++.+.+++..++-+.++ .+.+.+|.+
T Consensus 15 G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~ 94 (438)
T COG4091 15 GKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAE 94 (438)
T ss_pred CCceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchh
Confidence 4689999999999999998888899999999999999988887776655542 134668899
Q ss_pred HHhcCCCCcEEEEcCCCc-ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 67 ALLDDKDIDAVYLPLPTS-MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~-~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
++++...+|+|+-+|-.+ .-+++...|+.+|||+.+=- +-.++--.-=|.+.|.+.|+.+..+
T Consensus 95 ~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmN-VEaDvtIGp~Lk~~Ad~~GviyS~~ 158 (438)
T COG4091 95 LIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMN-VEADVTIGPILKQQADAAGVIYSGG 158 (438)
T ss_pred hhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEE-eeeceeecHHHHHHHhhcCeEEecc
Confidence 999999999999988754 67899999999999977310 1123333344667888888887655
No 38
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.85 E-value=5.5e-08 Score=88.58 Aligned_cols=148 Identities=16% Similarity=0.223 Sum_probs=107.1
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcC---------CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCH-----HHHhcC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLA---------PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY-----EALLDD 71 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~---------~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~e~l~~ 71 (362)
|+++||+|+|+|..|...++.+++. -++++++|.+++..... .++.++-..+.++. .+++.+
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR----DLDLLNAEVWTTDGALSLGDEVLLD 76 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc----cccccchhhheecccccccHhhhcc
Confidence 3589999999999999888877653 25899999998765443 22222102345566 788888
Q ss_pred CCCcEEEEcCCC-----cccHHHHHHHHHcCCeEEEe-CCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccChhHHHHHH
Q 018020 72 KDIDAVYLPLPT-----SMHVKWAISVAQKKKHLLME-KPMALNVAEFDVILNACEENGVQLM-DGTMWVHNPRTAQMKE 144 (362)
Q Consensus 72 ~~~D~V~i~~~~-----~~h~~~~~~al~~gk~V~~E-KP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p~~~~~k~ 144 (362)
+++|+|+=+++. .. .+++.+||++||||..- |++ -.....+|.+.|+++|+.++ .+.-----|.+..+++
T Consensus 77 ~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~--lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~lr~ 153 (333)
T COG0460 77 EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKAL--LALHYHELREAAEKNGVKLLYEATVGGGIPIIKLLRE 153 (333)
T ss_pred ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchH--hHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHHHHh
Confidence 899988866655 33 58999999999999854 322 12238899999999998775 4445557899999999
Q ss_pred hhcCCCCccceEEEEEEeee
Q 018020 145 FVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 145 ~i~~~g~iG~i~~i~~~~~~ 164 (362)
.+ . | -+|..+...++.
T Consensus 154 ~l-~-g--~~I~~i~GIlNG 169 (333)
T COG0460 154 LL-A-G--DEILSIRGILNG 169 (333)
T ss_pred hc-c-c--CceEEEEEEEec
Confidence 98 4 2 367777777653
No 39
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.79 E-value=4.3e-08 Score=90.02 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=78.2
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--------------CCcccCCHHHHhcCCCCcE
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--------------DAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--------------~~~~~~~~~e~l~~~~~D~ 76 (362)
|||+|+|.||+.+++.+...++++|++|+|.+++++..++.+++... +..++.++++++. ++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~vDi 78 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--KVDI 78 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh--cCCE
Confidence 68999999999999998878999999999999998888888765321 1233567999985 5999
Q ss_pred EEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 77 VYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
|+.+||...|..-...-++.| |.|+.--|
T Consensus 79 Vve~Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 79 VVDATPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred EEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence 999999999999999999999 67777555
No 40
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.78 E-value=1e-07 Score=85.80 Aligned_cols=134 Identities=16% Similarity=0.249 Sum_probs=93.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||+|||+|.||..++..+.+.. ..+.+.++++++++++.++++++ +...+++.+++++. .|+|++++|+..-.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~---~~~~~~~~~~~~~~--aDvVilav~p~~~~ 75 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP---KVRIAKDNQAVVDR--SDVVFLAVRPQIAE 75 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC---CceEeCCHHHHHHh--CCEEEEEeCHHHHH
Confidence 47999999999999999987653 23446789999999999988873 12567899999874 89999999975444
Q ss_pred HHHHHH-HHcCCeEEEeCCCCCCHHHHHHHHHH-------------HHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 88 KWAISV-AQKKKHLLMEKPMALNVAEFDVILNA-------------CEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 88 ~~~~~a-l~~gk~V~~EKP~~~~~~~~~~l~~~-------------a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
+++... ++.|++|+... .+.+.++.+++... +...+... +.+....+++++ ..+|
T Consensus 76 ~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~-------~~~~~~~~~~l~---~~lG 144 (258)
T PRK06476 76 EVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTA-------IYPPDPFVAALF---DALG 144 (258)
T ss_pred HHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeE-------ecCCHHHHHHHH---HhcC
Confidence 444332 24677888765 47788888877643 22223222 234456777777 3677
Q ss_pred ceEEE
Q 018020 154 QLRTM 158 (362)
Q Consensus 154 ~i~~i 158 (362)
....+
T Consensus 145 ~~~~~ 149 (258)
T PRK06476 145 TAVEC 149 (258)
T ss_pred CcEEE
Confidence 75543
No 41
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.73 E-value=4.5e-08 Score=80.92 Aligned_cols=125 Identities=22% Similarity=0.241 Sum_probs=87.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc-
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH- 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h- 86 (362)
..+|+|||+|.+|..++..+.+.. ...+.++|++++++++++++++...-...+.+.+++++ ++|+|++++|+..|
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGMKP 95 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCCCC
Confidence 578999999999999999998764 45566899999999998888763100023567777755 59999999999987
Q ss_pred ---HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhH
Q 018020 87 ---VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRT 139 (362)
Q Consensus 87 ---~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~ 139 (362)
.......++.|+-|+ + ++...... ++.+.+++.|..+..|...--+...
T Consensus 96 ~~~~~~~~~~~~~~~~v~-D--~~~~~~~~-~l~~~~~~~g~~~v~g~~~~~~q~~ 147 (155)
T cd01065 96 GDELPLPPSLLKPGGVVY-D--VVYNPLET-PLLKEARALGAKTIDGLEMLVYQAA 147 (155)
T ss_pred CCCCCCCHHHcCCCCEEE-E--cCcCCCCC-HHHHHHHHCCCceeCCHHHHHHHHH
Confidence 223345566666444 3 23332222 8888999999988877555443333
No 42
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=98.73 E-value=1.3e-07 Score=82.58 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=106.9
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHH--HHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKA--TNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~--~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+|||+|+|+ |.||+...+.+...|++++++.+++..... ....+-.++. -++.+.+++.... .++|+++-.|.|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~--~~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVK--ADADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcc--cCCCEEEECCCc
Confidence 689999998 899999999999999999999999875422 1111111111 1234566644443 469999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc--ceEEEEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG--QLRTMHSC 161 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG--~i~~i~~~ 161 (362)
..-.+.+..|+++|++..+-.- +.+.++.++|.+++++.++.+..|+..--+=.++.+++.- ..++ +|..++.+
T Consensus 80 ~~~~~~l~~~~~~~~~lVIGTT-Gf~~e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aa---k~l~~~DiEIiE~H 155 (266)
T COG0289 80 EATLENLEFALEHGKPLVIGTT-GFTEEQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAA---KVLDDYDIEIIEAH 155 (266)
T ss_pred hhhHHHHHHHHHcCCCeEEECC-CCCHHHHHHHHHHHhhCCEEEeccchHHHHHHHHHHHHHH---HhcCCCCEEehhhh
Confidence 9999999999999988776543 6789999999999999776666665554443444444433 3556 77777765
Q ss_pred ee
Q 018020 162 FS 163 (362)
Q Consensus 162 ~~ 163 (362)
..
T Consensus 156 Hr 157 (266)
T COG0289 156 HR 157 (266)
T ss_pred cc
Confidence 43
No 43
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.70 E-value=2.6e-07 Score=88.22 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=100.0
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC---CC---CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN---FP---PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~---~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|+|+|+|.+|+..+..|.+.+.+.-+.++|++.+++++++++.+ +. -++.-.++++++++. .|+|+.++|+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~--~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRG--CDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTT--SSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhc--CCEEEECCccc
Confidence 78999999999999999988777345599999999999887531 11 011112234556665 79999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH--HHHHhhcC-CCCccceEEEEEE
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA--QMKEFVSD-PQRFGQLRTMHSC 161 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~--~~k~~i~~-~g~iG~i~~i~~~ 161 (362)
.+..++..|+++|.|.+- .+.-.+...++.+.++++|+.+..++=+ .|... .++.++++ .+.++++..+.++
T Consensus 79 ~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g~~~l~~~G~--~PGl~~~~a~~~~~~~~~~~~~v~~~~~~ 153 (386)
T PF03435_consen 79 FGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAGVTALPGCGF--DPGLSNLLARYAADELDAEGDEVESVDIY 153 (386)
T ss_dssp GHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTTSEEE-S-BT--TTBHHHHHHHHHHHHHHHTTHEEEEEEEE
T ss_pred hhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhCCEEEeCccc--ccchHHHHHHHHHHHhhhhcccceEEEEE
Confidence 999999999999999665 2223788899999999999999877544 55543 33333311 1345688888866
Q ss_pred eeec
Q 018020 162 FSFA 165 (362)
Q Consensus 162 ~~~~ 165 (362)
+...
T Consensus 154 ~g~~ 157 (386)
T PF03435_consen 154 VGGL 157 (386)
T ss_dssp EEEE
T ss_pred Eccc
Confidence 6544
No 44
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.70 E-value=5e-08 Score=77.29 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=65.4
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCcccCCHH-HHhcCCCCcEEEEcCCCccc
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVYGSYE-ALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~~~h 86 (362)
||+|||+ |.+|..+++.+.++|+++++++++++.++.+.++..++ +. . ..+.+++ +.++..+.|+|++++|+..|
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~DvV~~~~~~~~~ 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK-G-EVVLELEPEDFEELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc-c-ccccccccCChhhcCCCEEEEcCCcHHH
Confidence 6899995 78899999999999999999999877666666666553 21 1 1123333 33344579999999999999
Q ss_pred HHHH---HHHHHcCCeEE
Q 018020 87 VKWA---ISVAQKKKHLL 101 (362)
Q Consensus 87 ~~~~---~~al~~gk~V~ 101 (362)
.+.+ ..+++.|+.|+
T Consensus 79 ~~~~~~~~~~~~~g~~vi 96 (122)
T smart00859 79 KEIAPLLPKAAEAGVKVI 96 (122)
T ss_pred HHHHHHHHhhhcCCCEEE
Confidence 9964 44557787665
No 45
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.69 E-value=7.3e-08 Score=90.17 Aligned_cols=92 Identities=17% Similarity=0.248 Sum_probs=71.4
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCC--CcccC--CHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPD--AKVYG--SYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~--~~~~~--~~~e~l~~~~~D~V~i~~~~ 83 (362)
+||+|||+ |.+|..+++.|.++|.+++++++++.....+.+.+.++--++ ...++ +.+++++ ++|+|++|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence 58999998 999999999999999999999877665555555555531001 01233 5566654 59999999999
Q ss_pred cccHHHHHHHHHcCCeEEE
Q 018020 84 SMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~ 102 (362)
..|.+++.+++++|++|+-
T Consensus 79 ~~s~~~~~~~~~~G~~VID 97 (346)
T TIGR01850 79 GVSAELAPELLAAGVKVID 97 (346)
T ss_pred hHHHHHHHHHHhCCCEEEe
Confidence 9999999999999998873
No 46
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.68 E-value=5.1e-07 Score=83.06 Aligned_cols=112 Identities=11% Similarity=0.129 Sum_probs=84.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCC-CCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDK-DIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~-~~D~V~i~~~~~~h~ 87 (362)
|||++||+|.||..++..+.+. +++|+ ++|+++++++.+++ .|. ..+.+.+++++.. +.|+|++++|+..+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~-g~~v~-v~dr~~~~~~~~~~-~g~----~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED-GHEVV-GYDVNQEAVDVAGK-LGI----TARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHH-CCC----eecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 3799999999999999999876 67776 79999998888754 453 5788999998753 479999999999665
Q ss_pred HHHHHHHHcC---CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 88 KWAISVAQKK---KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 88 ~~~~~al~~g---k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+-+..-+... .+++++-- +.++...+++.+.+++.|+.+.
T Consensus 74 ~~v~~~i~~~l~~g~ivid~s-t~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGG-NSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred HHHHHHHhccCCCCCEEEECC-CCCchhHHHHHHHHHHcCCeEE
Confidence 5443333221 25777632 5578899999999888887654
No 47
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=98.67 E-value=3.2e-07 Score=82.36 Aligned_cols=111 Identities=17% Similarity=0.258 Sum_probs=90.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
+||++||+|.||...+..|.+. ++++. ++|++++++.....+.|. ..+.+..|..+. .|+|+.+.|+..+.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a-G~~v~-v~~r~~~ka~~~~~~~Ga----~~a~s~~eaa~~--aDvVitmv~~~~~V~ 72 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA-GHEVT-VYNRTPEKAAELLAAAGA----TVAASPAEAAAE--ADVVITMLPDDAAVR 72 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC-CCEEE-EEeCChhhhhHHHHHcCC----cccCCHHHHHHh--CCEEEEecCCHHHHH
Confidence 4799999999999999999887 67755 899999997777777774 578899999886 999999999999988
Q ss_pred HHHH----HHH---cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 89 WAIS----VAQ---KKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 89 ~~~~----al~---~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.+.. .++ .| .++++-- +.+++.++++.+.+++.|+.++.
T Consensus 73 ~V~~g~~g~~~~~~~G-~i~IDmS-Tisp~~a~~~a~~~~~~G~~~lD 118 (286)
T COG2084 73 AVLFGENGLLEGLKPG-AIVIDMS-TISPETARELAAALAAKGLEFLD 118 (286)
T ss_pred HHHhCccchhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHhcCCcEEe
Confidence 8874 232 34 3555533 66999999999999999866554
No 48
>PRK06392 homoserine dehydrogenase; Provisional
Probab=98.66 E-value=8.4e-07 Score=81.92 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=101.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcC-------CCcEEEEEEcCCHH----------HHHHHHHHcCCCCCCcccC--CHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLA-------PNAVLSAVASRSLE----------KATNFAKANNFPPDAKVYG--SYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~-------~~~~vv~v~d~~~~----------~~~~~~~~~~~~~~~~~~~--~~~e~l 69 (362)
|||+|||+|.+|+..++.+.+. .+++|++|+|++.. ...+..++ +.-. ....+ ++++++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~-~~~~~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLE-EIDYEKIKFDEIF 78 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-Cccc-cCCCCcCCHHHHh
Confidence 5899999999999998888653 46899999997532 11111222 2000 01123 788888
Q ss_pred cCCCCcEEEEcCCCcc----cHHHHHHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHHcCCEEEEee-ecccChhHHHH
Q 018020 70 DDKDIDAVYLPLPTSM----HVKWAISVAQKKKHLLME-K-PMALNVAEFDVILNACEENGVQLMDGT-MWVHNPRTAQM 142 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~----h~~~~~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~~~~~~~v~~-~~r~~p~~~~~ 142 (362)
+ .++|+|+=+||... ...+..++|++|+||.+- | |++ ....+|.++|+++|+.+...- -----|.+..+
T Consensus 79 ~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA---~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~ 154 (326)
T PRK06392 79 E-IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLA---NHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR 154 (326)
T ss_pred c-CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHH---hhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence 7 58999999998532 467779999999999854 3 443 456889999999999886443 33467888888
Q ss_pred HHhhcCCCCccceEEEEEEeee
Q 018020 143 KEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 143 k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
+..+ . | -+|..++..++.
T Consensus 155 ~~~~-~-g--~~i~~i~GilnG 172 (326)
T PRK06392 155 DYST-L-P--SRIKNFRGIVSS 172 (326)
T ss_pred hhhc-c-c--CCEEEEEEEEeC
Confidence 6554 2 3 367888876653
No 49
>PRK06046 alanine dehydrogenase; Validated
Probab=98.65 E-value=8.6e-08 Score=89.09 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=79.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--CCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--PPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..-+++|||+|.+|..|+..+...++++.+.++|+++++++++++++.- +..+..++|++++++ +|+|+++||+.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aTps~ 204 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTTPSR 204 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEecCCC
Confidence 3568999999999999999998888999999999999999998887631 112356889999985 89999999985
Q ss_pred ccHHHH-HHHHHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 85 MHVKWA-ISVAQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 85 ~h~~~~-~~al~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
. +++ .+.++.|.||.+ ++.+....+|+-
T Consensus 205 ~--P~~~~~~l~~g~hV~~---iGs~~p~~~El~ 233 (326)
T PRK06046 205 K--PVVKAEWIKEGTHINA---IGADAPGKQELD 233 (326)
T ss_pred C--cEecHHHcCCCCEEEe---cCCCCCccccCC
Confidence 4 333 345799999884 444433344443
No 50
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.61 E-value=1.1e-06 Score=80.92 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=84.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCC-CCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDK-DIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~-~~D~V~i~~~~~~h~ 87 (362)
||||+||+|.||..++..|.+. +.+|+ ++|+++++.+.+.+ .|. ..+++++++++.. ++|+|++++|+..+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~-g~~v~-v~dr~~~~~~~~~~-~g~----~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG-GHEVV-GYDRNPEAVEALAE-EGA----TGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC-CCeEE-EEECCHHHHHHHHH-CCC----eecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 4799999999999999999876 67765 79999999888854 453 5788999998753 479999999998543
Q ss_pred H-HHHHH---HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 88 K-WAISV---AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 88 ~-~~~~a---l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
+ ++... ++.| +++++- -+.+.+..+++.+.+++.|+.+..
T Consensus 74 ~~v~~~l~~~l~~g-~ivid~-st~~~~~~~~~~~~~~~~g~~~~d 117 (301)
T PRK09599 74 DATIDELAPLLSPG-DIVIDG-GNSYYKDDIRRAELLAEKGIHFVD 117 (301)
T ss_pred HHHHHHHHhhCCCC-CEEEeC-CCCChhHHHHHHHHHHHcCCEEEe
Confidence 3 33332 2333 566663 256788899999999999987654
No 51
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.60 E-value=1.4e-06 Score=79.40 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=75.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.|||++||+|.||...+..+.+.+ ..++ .+++|+. ++++.+++++|+ ....+..++++. .|+|++++|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v-~v~~r~~~~~~~~l~~~~g~----~~~~~~~e~~~~--aDvVilav~p 75 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQI-TVSNRSNETRLQELHQKYGV----KGTHNKKELLTD--ANILFLAMKP 75 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceE-EEECCCCHHHHHHHHHhcCc----eEeCCHHHHHhc--CCEEEEEeCH
Confidence 579999999999999999887653 2444 4788865 567888887775 467888888764 8999999999
Q ss_pred cccHHHHHHHHHc--CCeEEEeCCCCCCHHHHHHHH
Q 018020 84 SMHVKWAISVAQK--KKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 84 ~~h~~~~~~al~~--gk~V~~EKP~~~~~~~~~~l~ 117 (362)
....+.+...... ..++++.=--+.+.+..+++.
T Consensus 76 ~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~ 111 (279)
T PRK07679 76 KDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL 111 (279)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 8877777654432 234565533456777777755
No 52
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.60 E-value=6.5e-07 Score=79.33 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=93.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.+.|||+||+|.||...+..|.+. ++.|+ |+||+.++.+.|.+.- ..++++..|+.++ .|+|+.+.|++.|
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~-G~kVt-V~dr~~~k~~~f~~~G-----a~v~~sPaeVae~--sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKA-GYKVT-VYDRTKDKCKEFQEAG-----ARVANSPAEVAED--SDVVITMVPNPKD 104 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHc-CCEEE-EEeCcHHHHHHHHHhc-----hhhhCCHHHHHhh--cCEEEEEcCChHh
Confidence 468999999999999999999988 78866 9999999999998754 4789999999997 9999999999988
Q ss_pred HHHHHH-------HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 87 VKWAIS-------VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 87 ~~~~~~-------al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
..-+.. .++.|+...++-- +.+++-+++|.+.++..|..+..+
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmS-Tidp~~s~ei~~~i~~~~~~~vDA 154 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMS-TIDPDTSLEIAKAISNKGGRFVDA 154 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEecc-ccCHHHHHHHHHHHHhCCCeEEec
Confidence 776653 3445555545533 668899999999998887766543
No 53
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.60 E-value=7.9e-08 Score=76.01 Aligned_cols=110 Identities=26% Similarity=0.310 Sum_probs=71.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.++||+|||+|..|..+...|.+. +++|+++++++.+.+++.+...+- ..+.+++|++.+ .|+++|++|.+.-
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~srs~~sa~~a~~~~~~----~~~~~~~~~~~~--aDlv~iavpDdaI 81 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA-GHEVVGVYSRSPASAERAAAFIGA----GAILDLEEILRD--ADLVFIAVPDDAI 81 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT-TSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC---SEEEE-S-CCHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCCccccccccccccc----cccccccccccc--CCEEEEEechHHH
Confidence 479999999999999999999877 789999999999888888776652 346678888875 9999999999988
Q ss_pred HHHHHHHHHc-----CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 87 VKWAISVAQK-----KKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 87 ~~~~~~al~~-----gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+++...... |+ +++=- |-...-++++-+++.|...+
T Consensus 82 ~~va~~La~~~~~~~g~-iVvHt----SGa~~~~vL~p~~~~Ga~~~ 123 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQ-IVVHT----SGALGSDVLAPARERGAIVA 123 (127)
T ss_dssp HHHHHHHHCC--S-TT--EEEES-----SS--GGGGHHHHHTT-EEE
T ss_pred HHHHHHHHHhccCCCCc-EEEEC----CCCChHHhhhhHHHCCCeEE
Confidence 8888877665 43 33322 23333445666777776554
No 54
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.57 E-value=6.9e-08 Score=76.35 Aligned_cols=89 Identities=26% Similarity=0.383 Sum_probs=67.9
Q ss_pred EEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccC-CHHHHhcCCCCcEEEEcCCCc
Q 018020 10 RFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYG-SYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 10 ~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~-~~~e~l~~~~~D~V~i~~~~~ 84 (362)
||+||| +|.+|...++.|.++|.++++.+++++.+..+.+...+..+ .+..+-+ +.+++ .++|+|+.|+|+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL---SDVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH---TTESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh---hcCCEEEecCchh
Confidence 799999 89999999999999999999999998874555555554311 1112222 23333 3699999999999
Q ss_pred ccHHHHHHHHHcCCeEE
Q 018020 85 MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~ 101 (362)
.+.+++.+++++|..|+
T Consensus 78 ~~~~~~~~~~~~g~~Vi 94 (121)
T PF01118_consen 78 ASKELAPKLLKAGIKVI 94 (121)
T ss_dssp HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhhCCcEEE
Confidence 99999999999999665
No 55
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.57 E-value=2.7e-06 Score=75.73 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=81.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||++||+|.||...+..+.+.+ ..+-+.+++|+++++++++++||+. ..++.+++.+. .|+|++++.|..
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~----~~~~~~~~~~~--advv~LavKPq~ 74 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVV----TTTDNQEAVEE--ADVVFLAVKPQD 74 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCc----ccCcHHHHHhh--CCEEEEEeChHh
Confidence 368999999999999999988775 2345669999999999999999974 37777788775 999999999977
Q ss_pred cHHHHHHHH--HcCCeEEEeCCCCCCHHHHHHHHH
Q 018020 86 HVKWAISVA--QKKKHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 86 h~~~~~~al--~~gk~V~~EKP~~~~~~~~~~l~~ 118 (362)
..+++...- ..++.|+.= -.+.+.+..++++.
T Consensus 75 ~~~vl~~l~~~~~~~lvISi-aAGv~~~~l~~~l~ 108 (266)
T COG0345 75 LEEVLSKLKPLTKDKLVISI-AAGVSIETLERLLG 108 (266)
T ss_pred HHHHHHHhhcccCCCEEEEE-eCCCCHHHHHHHcC
Confidence 777776664 367777653 23668888888775
No 56
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.53 E-value=2.4e-06 Score=77.28 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=74.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||+|||+|.||..++..+.+.. ....+.++++++++++.+.+.+++ .+..+.+++++ +.|+|++++|+..+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~----~~~~~~~~~~~--~advVil~v~~~~~ 75 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGV----RAATDNQEAAQ--EADVVVLAVKPQVM 75 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCC----eecCChHHHHh--cCCEEEEEcCHHHH
Confidence 468999999999999999887653 223466899999999988887775 46778888876 48999999999988
Q ss_pred HHHHHHHHHc-CCeEEEeCCCCCCHHHHH
Q 018020 87 VKWAISVAQK-KKHLLMEKPMALNVAEFD 114 (362)
Q Consensus 87 ~~~~~~al~~-gk~V~~EKP~~~~~~~~~ 114 (362)
.+++...... ++.|+.-.. +.+.+..+
T Consensus 76 ~~v~~~l~~~~~~~vvs~~~-gi~~~~l~ 103 (267)
T PRK11880 76 EEVLSELKGQLDKLVVSIAA-GVTLARLE 103 (267)
T ss_pred HHHHHHHHhhcCCEEEEecC-CCCHHHHH
Confidence 8888776543 455554332 33444433
No 57
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.52 E-value=1.6e-06 Score=79.76 Aligned_cols=110 Identities=20% Similarity=0.299 Sum_probs=82.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
+||+|||+|.||..++..+.+. +.+|. ++|+++++.+.+.+ .+. ...++++++++. .|+|++++|+..|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~-g~~v~-~~d~~~~~~~~~~~-~g~----~~~~~~~e~~~~--~d~vi~~vp~~~~~~ 73 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA-GYSLV-VYDRNPEAVAEVIA-AGA----ETASTAKAVAEQ--CDVIITMLPNSPHVK 73 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC-CCeEE-EEcCCHHHHHHHHH-CCC----eecCCHHHHHhc--CCEEEEeCCCHHHHH
Confidence 5899999999999999998765 67765 78999988877654 343 467899999874 999999999988766
Q ss_pred HHH-------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 89 WAI-------SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 89 ~~~-------~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.+. ..++.|+ ++++-- +.++..++++.+.+++.|..+..
T Consensus 74 ~v~~~~~~~~~~~~~g~-iiid~s-t~~~~~~~~l~~~~~~~g~~~~d 119 (296)
T PRK11559 74 EVALGENGIIEGAKPGT-VVIDMS-SIAPLASREIAAALKAKGIEMLD 119 (296)
T ss_pred HHHcCcchHhhcCCCCc-EEEECC-CCCHHHHHHHHHHHHHcCCcEEE
Confidence 553 2233343 455532 55778889999998888766543
No 58
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.52 E-value=1.9e-06 Score=79.27 Aligned_cols=112 Identities=12% Similarity=0.169 Sum_probs=82.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
|||+|||+|.||..++..+.+. +.+|+ ++|+++++++.+.+. +. ..+.+++++.+. .++|+|++++|+....
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~-g~~V~-~~dr~~~~~~~l~~~-g~----~~~~s~~~~~~~~~~~dvIi~~vp~~~~~ 73 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR-GHDCV-GYDHDQDAVKAMKED-RT----TGVANLRELSQRLSAPRVVWVMVPHGIVD 73 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHc-CC----cccCCHHHHHhhcCCCCEEEEEcCchHHH
Confidence 4799999999999999999876 67776 699999999988764 33 345788887653 4689999999998555
Q ss_pred HHHHHHH---HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 88 KWAISVA---QKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 88 ~~~~~al---~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
+++...+ +.| +++++- -+.+..+..++.+.+++.|+.+..
T Consensus 74 ~v~~~l~~~l~~g-~ivid~-st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 74 AVLEELAPTLEKG-DIVIDG-GNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred HHHHHHHhhCCCC-CEEEEC-CCCCcccHHHHHHHHHhcCCeEEe
Confidence 5554433 334 466662 234557888888888888876543
No 59
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.51 E-value=2.9e-06 Score=82.51 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=90.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc---CCCCCCcccCCHHHHhcC-CCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN---NFPPDAKVYGSYEALLDD-KDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~ 82 (362)
...+||+||+|.||..++..|.+. +++|+ |+||++++++.+.+.. |.. ....+.|++|+.+. ..+|+|+++.|
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~-G~~V~-V~NRt~~k~~~l~~~~~~~Ga~-~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGNL-PLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhC-CCeEE-EECCCHHHHHHHHHhhhhcCCc-ccccCCCHHHHHhcCCCCCEEEEECC
Confidence 456899999999999999999877 78755 9999999999987742 311 12367899999864 46999999999
Q ss_pred CcccHHHHH----HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 83 TSMHVKWAI----SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 83 ~~~h~~~~~----~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+....+-+. ..++.| .++++-- +.++++.+++.+.++++|+.+.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G-~iiID~s-T~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPG-DCIIDGG-NEWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred CcHHHHHHHHHHHhhcCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCeEE
Confidence 998766664 233445 5777743 5578999999999998877644
No 60
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=98.50 E-value=3.4e-06 Score=73.75 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=108.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH-HHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATN-FAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~-~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
|++.+.|+|+.|...++.+.++|++++|++++++.++.-+ +.+--|.+ .++...++++..++.-.-++++...-+ .
T Consensus 3 ~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~-~- 80 (350)
T COG3804 3 LRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLP-S- 80 (350)
T ss_pred ceeEEeccchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceeccccceeeecccc-h-
Confidence 7899999999999999999999999999999998766543 33333443 245567888888886444555555444 3
Q ss_pred HHHHHHHHHcCCeEEEe-----CCCCCCHHHHHHHHHHHHHcCC-EEEEeeecccCh-hHHHHHHhhcCCCCccceEEEE
Q 018020 87 VKWAISVAQKKKHLLME-----KPMALNVAEFDVILNACEENGV-QLMDGTMWVHNP-RTAQMKEFVSDPQRFGQLRTMH 159 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~E-----KP~~~~~~~~~~l~~~a~~~~~-~~~v~~~~r~~p-~~~~~k~~i~~~g~iG~i~~i~ 159 (362)
.+...++|++|++|+|- -|.....+.+.++.+.|.++|. .+... --.| +...+--++ -+|..-+|..++
T Consensus 81 ~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gt---GI~pGF~~dllpml-Lsgpcteve~ir 156 (350)
T COG3804 81 VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGT---GIGPGFVTDLLPML-LSGPCTEVEFIR 156 (350)
T ss_pred HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEec---ccCccHHHHHHHHH-HcccccceEEEe
Confidence 88899999999999987 6888899999999999999998 55433 2344 333344444 456666777766
Q ss_pred EEe
Q 018020 160 SCF 162 (362)
Q Consensus 160 ~~~ 162 (362)
+.-
T Consensus 157 ~~e 159 (350)
T COG3804 157 SEE 159 (350)
T ss_pred eee
Confidence 654
No 61
>PRK07680 late competence protein ComER; Validated
Probab=98.47 E-value=6e-06 Score=74.95 Aligned_cols=101 Identities=14% Similarity=0.237 Sum_probs=72.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCC--cEEEEEEcCCHHHHHHHHHHc-CCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPN--AVLSAVASRSLEKATNFAKAN-NFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~--~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
|||+|||+|.||..++..|.+... .+-+.+++|++++++.+++++ ++ ....+.++++.. .|+|++++|+..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~----~~~~~~~~~~~~--aDiVilav~p~~ 74 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGI----HVAKTIEEVISQ--SDLIFICVKPLD 74 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCe----EEECCHHHHHHh--CCEEEEecCHHH
Confidence 479999999999999999876642 234668999999998888876 43 567888888764 899999999888
Q ss_pred cHHHHHHHH---HcCCeEEEeCCCCCCHHHHHHH
Q 018020 86 HVKWAISVA---QKKKHLLMEKPMALNVAEFDVI 116 (362)
Q Consensus 86 h~~~~~~al---~~gk~V~~EKP~~~~~~~~~~l 116 (362)
..+++.... +.++. ++--.-+.+.+..+++
T Consensus 75 ~~~vl~~l~~~l~~~~~-iis~~ag~~~~~L~~~ 107 (273)
T PRK07680 75 IYPLLQKLAPHLTDEHC-LVSITSPISVEQLETL 107 (273)
T ss_pred HHHHHHHHHhhcCCCCE-EEEECCCCCHHHHHHH
Confidence 777766543 33443 3332333466555554
No 62
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.46 E-value=2e-06 Score=77.84 Aligned_cols=102 Identities=7% Similarity=0.126 Sum_probs=76.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+||++||+|.||...+..|.+.. ..+ +.++|+++++++.+.+++|+ ..+++.++++.+ .|+|++++||..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~-I~v~~r~~~~~~~l~~~~g~----~~~~~~~e~~~~--aDiIiLavkP~~ 75 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQ-IICSDLNVSNLKNASDKYGI----TITTNNNEVANS--ADILILSIKPDL 75 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCce-EEEECCCHHHHHHHHHhcCc----EEeCCcHHHHhh--CCEEEEEeChHH
Confidence 57999999999999999987653 234 45789999999988887875 467888888874 899999999855
Q ss_pred cHHHHHHHHH--cCCeEEEeCCCCCCHHHHHHHH
Q 018020 86 HVKWAISVAQ--KKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 86 h~~~~~~al~--~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
-.+++..... .+.++++.=-.+.++++.++++
T Consensus 76 ~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l 109 (272)
T PRK12491 76 YSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEF 109 (272)
T ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhc
Confidence 5555544322 2345676666677888887765
No 63
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.46 E-value=6.6e-07 Score=83.06 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=78.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc---CCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN---NFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..-++||||+|.+|..|+..+......+-+.|+|+++++++.+++++ ++ .+..++|.+++++ +.|+|+.+||.
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~--~v~~~~~~~eav~--~aDiVitaT~s 202 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEV--PVRAATDPREAVE--GCDILVTTTPS 202 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCC--cEEEeCCHHHHhc--cCCEEEEecCC
Confidence 35789999999999999999887778888999999999999988754 43 2456899999997 49999999987
Q ss_pred cccHHHH-HHHHHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 84 SMHVKWA-ISVAQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 84 ~~h~~~~-~~al~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
.. +++ ...++.|.||.+ ++.+....+|+-
T Consensus 203 ~~--P~~~~~~l~~g~~v~~---vGs~~p~~~Eld 232 (325)
T TIGR02371 203 RK--PVVKADWVSEGTHINA---IGADAPGKQELD 232 (325)
T ss_pred CC--cEecHHHcCCCCEEEe---cCCCCcccccCC
Confidence 43 333 446799999885 554444444444
No 64
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.46 E-value=6.5e-08 Score=73.09 Aligned_cols=90 Identities=22% Similarity=0.199 Sum_probs=72.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++.|++|+|+|+.|+..+....+..++.+++++|.++++.- ++. .+..+|.+.+++.+..++|+.++++|+..-
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G---~~i---~gipV~~~~~~l~~~~~i~iaii~VP~~~a 75 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG---KEI---GGIPVYGSMDELEEFIEIDIAIITVPAEAA 75 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT---SEE---TTEEEESSHHHHHHHCTTSEEEEES-HHHH
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC---cEE---CCEEeeccHHHhhhhhCCCEEEEEcCHHHH
Confidence 57899999999999977655555568999999999987433 222 134589999999876579999999999999
Q ss_pred HHHHHHHHHcC-CeEEE
Q 018020 87 VKWAISVAQKK-KHLLM 102 (362)
Q Consensus 87 ~~~~~~al~~g-k~V~~ 102 (362)
.+.+.+++++| |.|++
T Consensus 76 ~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 76 QEVADELVEAGIKGIVN 92 (96)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999 66765
No 65
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=98.45 E-value=2.6e-05 Score=73.95 Aligned_cols=211 Identities=10% Similarity=0.086 Sum_probs=134.9
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCC-cEEEEEEc-CCHHHHHHHHHHcCCCC---------------------CCccc-
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPN-AVLSAVAS-RSLEKATNFAKANNFPP---------------------DAKVY- 62 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v~d-~~~~~~~~~~~~~~~~~---------------------~~~~~- 62 (362)
+.||+|+|+ |++|..-+..++++|+ ++++++.- .+.+.+...+++|.... ++.++
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~ 136 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP 136 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence 469999998 9999999999988875 99988764 45556666555554210 01222
Q ss_pred --CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH
Q 018020 63 --GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA 140 (362)
Q Consensus 63 --~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 140 (362)
+++.++++.+++|+|+.+.--..-..-...|+++||+|.+--- -.=+.....+.++++++|..+.. -+....
T Consensus 137 G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANK-ESLV~aG~lI~~~ak~~~~~IlP-----VDSEHs 210 (454)
T PLN02696 137 GEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK-ETLIAGGPFVLPLAKKHGVKILP-----ADSEHS 210 (454)
T ss_pred CHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEecH-HHHHhhHHHHHHHHHHcCCeEee-----cchhhH
Confidence 3566777778899999998888777778999999999886322 01245566778899999987763 355566
Q ss_pred HHHHhhcCCCCccceEEEEEEeeecCCccc--------------ccCccCcCCCCCCCcccccccc---hHHHH--HHHH
Q 018020 141 QMKEFVSDPQRFGQLRTMHSCFSFAGDAEF--------------LKNDIRVKPDLDGLGALGDAGW---YGIRS--ILWA 201 (362)
Q Consensus 141 ~~k~~i~~~g~iG~i~~i~~~~~~~~~~~~--------------~~~~w~~~~~~~ggg~l~~~g~---h~id~--~~~l 201 (362)
.+-+++ ....-+.|..+...-+..+...+ ...+|..-+ .+-.|-.+ -.+.+ ..||
T Consensus 211 AIfQ~L-~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vT~~~ALkHP~W~MG~-----KITIDSATmmNKglEvIEA~~L 284 (454)
T PLN02696 211 AIFQCI-QGLPEGGLRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGK-----KITVDSATLMNKGLEVIEAHYL 284 (454)
T ss_pred HHHHHc-cCCCccCccEEEEECCchhccCCCHHHHhCCCHHHHhhCCCCcCCC-----eeeeehHhhhhhhHHHHHHHHH
Confidence 777777 43333456666655443221110 113343311 23233211 11233 4788
Q ss_pred ccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 202 NDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 202 ~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
||. +++++.....+ ....+.+++|.||.+
T Consensus 285 F~~-~~d~I~vvIHP-------qSiIHsmVef~DGS~ 313 (454)
T PLN02696 285 FGA-DYDDIDIVIHP-------QSIIHSMVETQDSSV 313 (454)
T ss_pred cCC-CHHHeEEEECc-------CCeeeEEEEEcCCcE
Confidence 985 36777777322 236788999999975
No 66
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=98.44 E-value=4.4e-06 Score=76.74 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=84.2
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKW 89 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~ 89 (362)
||++||+|.||...+..+.+. +.+| .++|+++++.+.+.+. +. ....+..++++. .|+|++++|+..+.+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~-G~~V-~v~d~~~~~~~~~~~~-g~----~~~~s~~~~~~~--aDvVi~~vp~~~~~~~ 73 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ-GHQL-QVFDVNPQAVDALVDK-GA----TPAASPAQAAAG--AEFVITMLPNGDLVRS 73 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC-CCeE-EEEcCCHHHHHHHHHc-CC----cccCCHHHHHhc--CCEEEEecCCHHHHHH
Confidence 799999999999999999876 5665 4899999998887664 33 467889998875 8999999999876554
Q ss_pred HHH----H---HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 90 AIS----V---AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 90 ~~~----a---l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
+.. . ++.| .++++.- +.++...+++.+.+.+.|..+..+
T Consensus 74 vl~~~~~i~~~l~~g-~lvid~s-T~~p~~~~~l~~~l~~~g~~~lda 119 (296)
T PRK15461 74 VLFGENGVCEGLSRD-ALVIDMS-TIHPLQTDKLIADMQAKGFSMMDV 119 (296)
T ss_pred HHcCcccHhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCcEEEc
Confidence 432 1 2233 3666654 668999999999999888775543
No 67
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.43 E-value=5.8e-06 Score=76.86 Aligned_cols=150 Identities=12% Similarity=0.089 Sum_probs=98.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC---------CCcEEEEEEcCCHHHHH-------HHHHHcCCCC--CCcccCCHHHHh
Q 018020 8 AIRFGIIGAADIARKLSRAITLA---------PNAVLSAVASRSLEKAT-------NFAKANNFPP--DAKVYGSYEALL 69 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~---------~~~~vv~v~d~~~~~~~-------~~~~~~~~~~--~~~~~~~~~e~l 69 (362)
+++|+|+|+|.+|...++.+.+. -+++|++|++++..... .+.+.-..+. ......+.++++
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERA 81 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHh
Confidence 59999999999999887776432 25789999987543322 1100000000 000223445555
Q ss_pred cCC-CCcEEEEcCCCc-----ccHHHHHHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHHcCCEEEEe-eecccChhHH
Q 018020 70 DDK-DIDAVYLPLPTS-----MHVKWAISVAQKKKHLLME-K-PMALNVAEFDVILNACEENGVQLMDG-TMWVHNPRTA 140 (362)
Q Consensus 70 ~~~-~~D~V~i~~~~~-----~h~~~~~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~~~~~~~v~-~~~r~~p~~~ 140 (362)
.++ ++|+|+=+||+. .-..++.+||++||||..- | |++.. .++|.++|+++|+.+... .-----|.+.
T Consensus 82 ~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~---~~eL~~lA~~~g~~~~yEasVggGiPiI~ 158 (346)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTN---WREINEAAKIANVRIRYSGATAAALPTLD 158 (346)
T ss_pred cCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhcc---HHHHHHHHHHcCCeEEEeeeeeeccchHH
Confidence 444 789999999875 3468889999999999854 4 54443 488888999999987643 3444688999
Q ss_pred HHHHhhcCCCCccceEEEEEEeee
Q 018020 141 QMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 141 ~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.++..+ . | -+|..++..++.
T Consensus 159 ~l~~~~-~-g--~~I~~i~GIlNG 178 (346)
T PRK06813 159 IGQFSL-A-G--CHIEKIEGILNG 178 (346)
T ss_pred HHhhhc-c-c--CcEEEEEEEEec
Confidence 986554 2 2 367788876653
No 68
>PLN02700 homoserine dehydrogenase family protein
Probab=98.43 E-value=1.1e-05 Score=75.40 Aligned_cols=152 Identities=12% Similarity=0.104 Sum_probs=98.0
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC--------CcEEEEEEcCCH--------------HHHHHHHHHcCCCCCCccc-
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP--------NAVLSAVASRSL--------------EKATNFAKANNFPPDAKVY- 62 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~--------~~~vv~v~d~~~--------------~~~~~~~~~~~~~~~~~~~- 62 (362)
|++++|+|||+|.+|+..++.+.+.. ++.|++|+|... +...+.............+
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~ 80 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALG 80 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhh
Confidence 35899999999999998776653321 378889988421 1111110010000000001
Q ss_pred ------------------CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHH
Q 018020 63 ------------------GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLME-K-PMALNVAEFDVILNACEE 122 (362)
Q Consensus 63 ------------------~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~ 122 (362)
.+..+.+.....++++-||++..-.++...+|++|+||..- | |++.+.++.+++. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la----~ 156 (377)
T PLN02700 81 ALAGGCQVFNNSELSRKVIDIATLLGKSTGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLA----A 156 (377)
T ss_pred hccccccccccccccchhhhHHHHhhccCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHH----H
Confidence 22334443334689999999977789999999999998843 4 7788888877766 2
Q ss_pred cCCEEEE-eeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 123 NGVQLMD-GTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 123 ~~~~~~v-~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
+|+.+.. +.-----|.+..+++++ ..| -+|..|+..++.
T Consensus 157 ~~~~~~yEatVgaGlPiI~tl~~ll-~sG--d~I~~I~GIlnG 196 (377)
T PLN02700 157 HPRRIRHESTVGAGLPVIASLNRIL-SSG--DPVHRIVGSLSG 196 (377)
T ss_pred cCCeEEEEeeeeeccchHHHHHHHh-hcc--CCEEEEEEEEeC
Confidence 5766653 33444689999999998 444 368888887764
No 69
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.41 E-value=7.5e-07 Score=82.99 Aligned_cols=114 Identities=20% Similarity=0.150 Sum_probs=85.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----CCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----NFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+++|||+|.+|..|+..+....+++-+.+++|++++++++++++ +++ +..++|+++++.+ .|+|+.+||.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~--v~~~~d~~~al~~--aDiVi~aT~s 207 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIP--VTVARDVHEAVAG--ADIIVTTTPS 207 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCce--EEEeCCHHHHHcc--CCEEEEeeCC
Confidence 4589999999999999999886556778889999999999998865 332 3457899999985 8999999987
Q ss_pred cccHHHHHH-HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 84 SMHVKWAIS-VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 84 ~~h~~~~~~-al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
.. +++.. .++.|.||.+ ++.+....+++....-+....+.+.
T Consensus 208 ~~--p~i~~~~l~~g~~v~~---vg~d~~~~rEld~~~l~~a~~v~vD 250 (330)
T PRK08291 208 EE--PILKAEWLHPGLHVTA---MGSDAEHKNEIAPAVFAAADLYVCD 250 (330)
T ss_pred CC--cEecHHHcCCCceEEe---eCCCCCCcccCCHHHHhhCCEEEeC
Confidence 53 44433 4789999986 7777777777755444433334443
No 70
>PLN02775 Probable dihydrodipicolinate reductase
Probab=98.37 E-value=3.3e-06 Score=75.56 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=89.5
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHH-HHcCCCCCCccc--CCHHHHhcCC---CCc-EEE
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFA-KANNFPPDAKVY--GSYEALLDDK---DID-AVY 78 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~e~l~~~---~~D-~V~ 78 (362)
..+||.+.|+ |.||+..+..+.+ ++++||+..|+.+.- +... +-.|. ++.++ +|++++|... .+| ++|
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~-~~~~~~~~g~--~v~~~~~~dl~~~l~~~~~~~~~~VvI 85 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAG-VGVTVEVCGV--EVRLVGPSEREAVLSSVKAEYPNLIVV 85 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEecccccc-ccccceeccc--eeeeecCccHHHHHHHhhccCCCEEEE
Confidence 4689999997 8899999999988 899999999976532 1111 11222 24577 9999999654 799 788
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
-.|.|..-.+.+..|+++|+++.+-.. +.+.++.+ +.++++++.+....|+
T Consensus 86 DFT~P~a~~~~~~~~~~~g~~~VvGTT-G~~~e~l~---~~~~~~~i~vv~apNf 136 (286)
T PLN02775 86 DYTLPDAVNDNAELYCKNGLPFVMGTT-GGDRDRLL---KDVEESGVYAVIAPQM 136 (286)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEECC-CCCHHHHH---HHHhcCCccEEEECcc
Confidence 899999999999999999999998766 45666444 5555566766665554
No 71
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.36 E-value=1e-05 Score=78.47 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=83.9
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~~ 88 (362)
+||+||+|.||...+..+.+. +++|+ ++|+++++.+.+.+++....++..+++++++.+. .++|+|++++|+....+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-G~~V~-v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-GFTVS-VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-CCeEE-EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 489999999999999999877 67755 8999999999998764211123467889998864 46899999999976655
Q ss_pred HHHHHH----HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 89 WAISVA----QKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 89 ~~~~al----~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
-+...+ +.| +++++-- +.+..+..+..+.++++|+.+.
T Consensus 79 ~Vi~~l~~~L~~g-~iIID~g-ns~~~~t~~~~~~l~~~gi~fv 120 (467)
T TIGR00873 79 AVINQLLPLLEKG-DIIIDGG-NSHYPDTERRYKELKAKGILFV 120 (467)
T ss_pred HHHHHHHhhCCCC-CEEEECC-CcCHHHHHHHHHHHHhcCCEEE
Confidence 554333 334 5777722 2467888888888888776543
No 72
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.34 E-value=6.7e-06 Score=75.36 Aligned_cols=109 Identities=18% Similarity=0.270 Sum_probs=81.2
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKW 89 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~ 89 (362)
||+|||+|.||...+..+.+. +++|+ ++|+++++.+.+.+. |. ...++.++++++ .|+|++++|+..+...
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~----~~~~~~~~~~~~--aDivi~~vp~~~~~~~ 71 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-GYQLH-VTTIGPEVADELLAA-GA----VTAETARQVTEQ--ADVIFTMVPDSPQVEE 71 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-CCeEE-EEcCCHHHHHHHHHC-CC----cccCCHHHHHhc--CCEEEEecCCHHHHHH
Confidence 589999999999999998876 67766 789999988877653 42 356788898875 9999999998766554
Q ss_pred HH---H-HH---HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 90 AI---S-VA---QKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 90 ~~---~-al---~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
+. . ++ +.| .++++-- +.++...+++.+.+++.|..+..
T Consensus 72 v~~~~~~~~~~~~~g-~iivd~s-t~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 72 VAFGENGIIEGAKPG-KTLVDMS-SISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHcCcchHhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCCEEe
Confidence 43 1 22 233 3555532 56788889999999888776554
No 73
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.33 E-value=5.1e-06 Score=75.51 Aligned_cols=103 Identities=10% Similarity=0.154 Sum_probs=73.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+||+|||+|.||..++..+.+.+ ..+++++..+.+++.+.+...++ ......+.+++++. .|+|++++|+..
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~---~~~~~~~~~e~~~~--aDvVilavpp~~ 76 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP---TVELADNEAEIFTK--CDHSFICVPPLA 76 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC---CeEEeCCHHHHHhh--CCEEEEecCHHH
Confidence 47999999999999999887653 25666444444555666666553 12456788888764 899999999988
Q ss_pred cHHHHHHH---HHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 86 HVKWAISV---AQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 86 h~~~~~~a---l~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
+.+++... ++.+++|++ ..-+.+.++.+++.
T Consensus 77 ~~~vl~~l~~~l~~~~~ivS-~~aGi~~~~l~~~~ 110 (277)
T PRK06928 77 VLPLLKDCAPVLTPDRHVVS-IAAGVSLDDLLEIT 110 (277)
T ss_pred HHHHHHHHHhhcCCCCEEEE-ECCCCCHHHHHHHc
Confidence 88877755 345666554 55667888777754
No 74
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.33 E-value=1.2e-06 Score=80.50 Aligned_cols=103 Identities=15% Similarity=0.071 Sum_probs=77.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
...+++|||+|.+|..|+..+....+.+-+.|++|+++++++++++++-. .. ..+++.++++. +.|+|+.+||...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~-~~~~~~~~av~--~aDiVitaT~s~~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPT-AEPLDGEAIPE--AVDLVVTATTSRT 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCe-eEECCHHHHhh--cCCEEEEccCCCC
Confidence 34689999999999999999876556667889999999999999987411 11 12678999887 5999999999864
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
+++...++.|.||.+ ++.+....+|+-
T Consensus 201 --Pl~~~~~~~g~hi~~---iGs~~p~~~El~ 227 (304)
T PRK07340 201 --PVYPEAARAGRLVVA---VGAFTPDMAELA 227 (304)
T ss_pred --ceeCccCCCCCEEEe---cCCCCCCcccCC
Confidence 444456789999986 554444444433
No 75
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.30 E-value=5.6e-06 Score=77.22 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=74.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CC--CCCCcccCCHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NF--PPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~--~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
.|||+|||+|.||..++..|.+. +.+|. ++++++++++.+.+.. |. +..+...+++++.++. .|+|+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~-G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~--aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK-GVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG--ADFAV 79 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC--CCEEE
Confidence 57999999999999999998766 56655 7899988888777542 21 1113456788888764 89999
Q ss_pred EcCCCcccHHHHHHHHHcCCe-EEEeCCCCCCHHHHHHHHHHHHH
Q 018020 79 LPLPTSMHVKWAISVAQKKKH-LLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~-V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
+++|+....+++ ..++.+.. |.+-|.+.......+++.+...+
T Consensus 80 ~~v~~~~~~~v~-~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 80 VAVPSKALRETL-AGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred EECchHHHHHHH-HhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 999999654443 44556654 44777665442224444444443
No 76
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.29 E-value=1.9e-05 Score=76.72 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=82.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCCHHHHhcC-CCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYEALLDD-KDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h 86 (362)
.+|||||+|.||..++..|.+. +++|. ++|+++++.+.+.+....+ .....++|++|+++. +++|+|+++.++...
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-GFKIS-VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 3699999999999999999877 67744 8999999998887642110 112468899999875 468999998777655
Q ss_pred HHHHHHH----HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 87 VKWAISV----AQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 87 ~~~~~~a----l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
.+-+... ++.| .++++-- ..+..+..++.+.++++|+.+
T Consensus 80 v~~vi~~l~~~L~~g-~iIID~g-n~~~~dt~~r~~~l~~~Gi~f 122 (470)
T PTZ00142 80 VDETIDNLLPLLEKG-DIIIDGG-NEWYLNTERRIKRCEEKGILY 122 (470)
T ss_pred HHHHHHHHHhhCCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCeE
Confidence 4444332 3334 5666632 446788888888888877654
No 77
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.28 E-value=2.7e-05 Score=67.16 Aligned_cols=150 Identities=11% Similarity=0.151 Sum_probs=106.8
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC--------CcEEEEEEcC---------CHHHH-----HHHHHHcCCCCCCcccC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP--------NAVLSAVASR---------SLEKA-----TNFAKANNFPPDAKVYG 63 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~--------~~~vv~v~d~---------~~~~~-----~~~~~~~~~~~~~~~~~ 63 (362)
|++++|+++|||.+|..+++.+..+. .++++++||. .++.. .++.+..+ ..+
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~-----~al- 74 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTG-----SAL- 74 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcC-----Ccc-
Confidence 35899999999999997666553321 4799999985 12222 22333333 122
Q ss_pred CHHHHhc----CCCCcEEEEcCCCcccHHHHHHHHHcCCeEEE--eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCh
Q 018020 64 SYEALLD----DKDIDAVYLPLPTSMHVKWAISVAQKKKHLLM--EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNP 137 (362)
Q Consensus 64 ~~~e~l~----~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~--EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p 137 (362)
+++.+++ .+.+=+++-+|...+-.++-.++++.|..+.. -||++.+++..+.|....+..+........----|
T Consensus 75 sLdaLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s~~fi~HEatVGAGLP 154 (364)
T KOG0455|consen 75 SLDALIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKSPRFIRHEATVGAGLP 154 (364)
T ss_pred cHHHHHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCCCceEEeeccccCCch
Confidence 3666543 46666777788888999999999999987764 58999999999999887764443444444455689
Q ss_pred hHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 138 RTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 138 ~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.+..++++| ..| -+|..|+..|+.
T Consensus 155 iIs~L~eiI-~tG--Dev~kIeGifSG 178 (364)
T KOG0455|consen 155 IISSLNEII-STG--DEVHKIEGIFSG 178 (364)
T ss_pred hHHHHHHHH-hcC--CceeEEEEEeec
Confidence 999999999 655 468888888764
No 78
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.27 E-value=1.6e-05 Score=72.83 Aligned_cols=110 Identities=14% Similarity=0.211 Sum_probs=81.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||++||+|.||...+..|.+. ++++. ++|+++. ++.+. +.|. ....+..++++ +.|+|++++|+..+.+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~-G~~v~-v~~~~~~-~~~~~-~~g~----~~~~s~~~~~~--~advVi~~v~~~~~v~ 70 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA-GHQLH-VTTIGPV-ADELL-SLGA----VSVETARQVTE--ASDIIFIMVPDTPQVE 70 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-CCeEE-EEeCCHh-HHHHH-HcCC----eecCCHHHHHh--cCCEEEEeCCChHHHH
Confidence 3799999999999999999876 57765 7888874 45554 3453 46788989876 4899999999986544
Q ss_pred HHHH-------HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 89 WAIS-------VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 89 ~~~~-------al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
-+.. .+..| .++++- -+.+++..+++.+.++++|..+..+
T Consensus 71 ~v~~~~~g~~~~~~~g-~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vda 117 (292)
T PRK15059 71 EVLFGENGCTKASLKG-KTIVDM-SSISPIETKRFARQVNELGGDYLDA 117 (292)
T ss_pred HHHcCCcchhccCCCC-CEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 4321 12334 466664 3678999999999999998876553
No 79
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.26 E-value=3.3e-06 Score=78.13 Aligned_cols=115 Identities=17% Similarity=0.067 Sum_probs=84.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..-+|+|||+|.+|..++..+....+++-+.|++|++++++.+++++.-. ..+..+++.++.+.. .|+|+.+|+..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~--aDIVi~aT~s~- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQ--ADIISCATLST- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhc--CCEEEEeeCCC-
Confidence 34689999999999999887765434555669999999999999886310 124567899998874 99998888876
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
+.-+-...++.|.||.+ ++.+....+|+-....+.+..+
T Consensus 201 ~pvl~~~~l~~g~~i~~---ig~~~~~~~El~~~~~~~a~~~ 239 (314)
T PRK06141 201 EPLVRGEWLKPGTHLDL---VGNFTPDMRECDDEAIRRASVY 239 (314)
T ss_pred CCEecHHHcCCCCEEEe---eCCCCcccccCCHHHHhcCcEE
Confidence 33233467889998886 5666667777776666555443
No 80
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=98.26 E-value=5.1e-06 Score=76.58 Aligned_cols=99 Identities=18% Similarity=0.087 Sum_probs=74.5
Q ss_pred EEEEEeccHHHHHHHHHHhcC---CCcEEEEEEcCCHHHHHHHHHHcCCCC-------------------CCccc--CCH
Q 018020 10 RFGIIGAADIARKLSRAITLA---PNAVLSAVASRSLEKATNFAKANNFPP-------------------DAKVY--GSY 65 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~---~~~~vv~v~d~~~~~~~~~~~~~~~~~-------------------~~~~~--~~~ 65 (362)
||||+|+|.+|+.+++.+... ++++|+++.|....+..+..-+|+... .+.++ .++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 699999999999999998764 369999999976655444444444211 11111 244
Q ss_pred HHHh-cCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCCC
Q 018020 66 EALL-DDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMAL 108 (362)
Q Consensus 66 ~e~l-~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~~ 108 (362)
+++- .+.++|+|+.||+...+.+.+..++++| +.|++.+|+..
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~ 125 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGAS 125 (325)
T ss_pred hhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcC
Confidence 4442 3458999999999999999999999999 99999999764
No 81
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.26 E-value=8.6e-06 Score=67.46 Aligned_cols=88 Identities=18% Similarity=0.321 Sum_probs=66.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC---------CCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN---------FPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
||+|||+|.+|...+..+... +.+ |-++.++++..+.+.+... ++....+.+|+++.+++ .|+|+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~-V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~--ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHE-VTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED--ADIIIIA 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEE-EEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT---SEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCE-EEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc--ccEEEec
Confidence 799999999999999988877 455 4489999988888876543 12345678999999986 8999999
Q ss_pred CCCcccHHHHHHHHH---cCCeEE
Q 018020 81 LPTSMHVKWAISVAQ---KKKHLL 101 (362)
Q Consensus 81 ~~~~~h~~~~~~al~---~gk~V~ 101 (362)
+|...|.+++.+... .+..++
T Consensus 77 vPs~~~~~~~~~l~~~l~~~~~ii 100 (157)
T PF01210_consen 77 VPSQAHREVLEQLAPYLKKGQIII 100 (157)
T ss_dssp S-GGGHHHHHHHHTTTSHTT-EEE
T ss_pred ccHHHHHHHHHHHhhccCCCCEEE
Confidence 999999988887654 455554
No 82
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=98.26 E-value=1.1e-06 Score=72.50 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=77.9
Q ss_pred CceeEEEEEeccHHHHHHHHH-HhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRA-ITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~-~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.++.++.|||+|.+|+..+.. +.+..++++++++|.+++..-.... ++| +.-.+++++.+++.++|++++++|..
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~--~v~--V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIG--DVP--VYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccC--Cee--eechHHHHHHHHhcCccEEEEEccHH
Confidence 357899999999999987664 3345589999999999885443222 233 23457888889888999999999998
Q ss_pred ccHHHHHHHHHcC-CeEEEeCCCCCCHH
Q 018020 85 MHVKWAISVAQKK-KHLLMEKPMALNVA 111 (362)
Q Consensus 85 ~h~~~~~~al~~g-k~V~~EKP~~~~~~ 111 (362)
.-.+.+....++| |-|+-=.|+-.++.
T Consensus 158 ~AQ~vad~Lv~aGVkGIlNFtPv~l~~p 185 (211)
T COG2344 158 HAQEVADRLVKAGVKGILNFTPVRLQVP 185 (211)
T ss_pred HHHHHHHHHHHcCCceEEeccceEecCC
Confidence 8889999999999 77776666554433
No 83
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.25 E-value=2.1e-05 Score=81.66 Aligned_cols=155 Identities=9% Similarity=0.054 Sum_probs=104.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC--------CcEEEEEEcCCHHHH-------HHHHHHcCCCCCCcccCCHHHHhcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP--------NAVLSAVASRSLEKA-------TNFAKANNFPPDAKVYGSYEALLDD 71 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~--------~~~vv~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~e~l~~ 71 (362)
++++|+|+|+|..|...++.+.+.. +++|++|++++.... ..+.+...-.....-.+++-+++..
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVKE 543 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 5899999999999998877764321 578899987533211 1111111100000012233344433
Q ss_pred C--CCcEEEEcCCCcccHHHHHHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHHcCCEEEEe-eecccChhHHHHHHhh
Q 018020 72 K--DIDAVYLPLPTSMHVKWAISVAQKKKHLLME-K-PMALNVAEFDVILNACEENGVQLMDG-TMWVHNPRTAQMKEFV 146 (362)
Q Consensus 72 ~--~~D~V~i~~~~~~h~~~~~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~~~~~~~v~-~~~r~~p~~~~~k~~i 146 (362)
. ..|+|+=||+...-.....+||++|+||..- | |++.+.+...+|.++|+++|+.+... .-----|.+..+++++
T Consensus 544 ~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~~~~ 623 (819)
T PRK09436 544 YHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQNLL 623 (819)
T ss_pred cCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHHHHH
Confidence 2 3589999999877677778999999999854 4 66777789999999999999988643 3334679999999987
Q ss_pred cCCCCccceEEEEEEeee
Q 018020 147 SDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 147 ~~~g~iG~i~~i~~~~~~ 164 (362)
..| -+|..+++.++.
T Consensus 624 -~~g--~~i~~i~GilnG 638 (819)
T PRK09436 624 -NAG--DELLKFEGILSG 638 (819)
T ss_pred -hcc--CcEEEEEEEEeC
Confidence 434 367788776653
No 84
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.22 E-value=2.3e-05 Score=71.73 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=81.5
Q ss_pred EEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHHH-
Q 018020 13 IIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAI- 91 (362)
Q Consensus 13 iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~- 91 (362)
+||+|.||...+..+.+. +.+|. ++|+++++.+.+.+ .|. ...+|..++++. .|+|++++|+..+.+.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~-G~~V~-v~dr~~~~~~~l~~-~g~----~~~~s~~~~~~~--advVil~vp~~~~~~~v~~ 71 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-GHPVR-VFDLFPDAVEEAVA-AGA----QAAASPAEAAEG--ADRVITMLPAGQHVISVYS 71 (288)
T ss_pred CCcccHhHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHH-cCC----eecCCHHHHHhc--CCEEEEeCCChHHHHHHHc
Confidence 589999999999999866 56754 78999998888765 343 467899999885 899999999977655443
Q ss_pred ---HHH---HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 92 ---SVA---QKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 92 ---~al---~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
..+ +.| .++++-- +.+++..+++.+.++++|+.+..
T Consensus 72 g~~~l~~~~~~g-~~vid~s-t~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 72 GDEGILPKVAKG-SLLIDCS-TIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred CcchHhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCcEEE
Confidence 222 233 4666655 88999999999999998876544
No 85
>PLN02256 arogenate dehydrogenase
Probab=98.21 E-value=2.5e-05 Score=71.77 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=61.3
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++++||+|||+|.||..++..+++. +.+|+ ++|++.. ...+.++|+ ..+++.++++. .++|+|++++|+..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~-G~~V~-~~d~~~~--~~~a~~~gv----~~~~~~~e~~~-~~aDvVilavp~~~ 104 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ-GHTVL-ATSRSDY--SDIAAELGV----SFFRDPDDFCE-EHPDVVLLCTSILS 104 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC-CCEEE-EEECccH--HHHHHHcCC----eeeCCHHHHhh-CCCCEEEEecCHHH
Confidence 4678999999999999999999876 57777 5666653 345566775 35788998874 25899999999987
Q ss_pred cHHHHHHH
Q 018020 86 HVKWAISV 93 (362)
Q Consensus 86 h~~~~~~a 93 (362)
..+++...
T Consensus 105 ~~~vl~~l 112 (304)
T PLN02256 105 TEAVLRSL 112 (304)
T ss_pred HHHHHHhh
Confidence 77777665
No 86
>PLN02712 arogenate dehydrogenase
Probab=98.20 E-value=2.4e-05 Score=79.33 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=65.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.+++||||||+|.||..++..+++. +.+|+ ++|++... ..+.++|+ ..++++++++.. +.|+|++|+|+..
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~-G~~V~-~~dr~~~~--~~a~~~Gv----~~~~~~~el~~~-~aDvVILavP~~~ 437 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQ-GHTVL-AYSRSDYS--DEAQKLGV----SYFSDADDLCEE-HPEVILLCTSILS 437 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHC-cCEEE-EEECChHH--HHHHHcCC----eEeCCHHHHHhc-CCCEEEECCChHH
Confidence 3578999999999999999999875 57766 67887543 33455664 467899998763 4899999999877
Q ss_pred cHHHHHHHHH--c-CCeEEEe
Q 018020 86 HVKWAISVAQ--K-KKHLLME 103 (362)
Q Consensus 86 h~~~~~~al~--~-gk~V~~E 103 (362)
-.+++..... . ...++++
T Consensus 438 ~~~vi~~l~~~~lk~g~ivvD 458 (667)
T PLN02712 438 TEKVLKSLPFQRLKRSTLFVD 458 (667)
T ss_pred HHHHHHHHHHhcCCCCcEEEE
Confidence 6766665432 1 1346665
No 87
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.19 E-value=6e-06 Score=76.80 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=77.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----CCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----NFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.-+++|||+|.+|..++..+....+++-+.|++|++++++++++++ ++. +..++++++.+.. .|+|+.+||.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~--v~~~~~~~~av~~--aDiVvtaT~s 204 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID--VTAATDPRAAMSG--ADIIVTTTPS 204 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce--EEEeCCHHHHhcc--CCEEEEecCC
Confidence 4589999999999999999976667888889999999999998875 432 3447899999874 9999999988
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
.. +-+-...++.|.||.. ++.+...-+|+-
T Consensus 205 ~~-p~i~~~~l~~g~~i~~---vg~~~p~~rEld 234 (326)
T TIGR02992 205 ET-PILHAEWLEPGQHVTA---MGSDAEHKNEID 234 (326)
T ss_pred CC-cEecHHHcCCCcEEEe---eCCCCCCceecC
Confidence 54 2223467899999884 555544444443
No 88
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.18 E-value=3.3e-05 Score=71.33 Aligned_cols=82 Identities=26% Similarity=0.163 Sum_probs=60.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..||+|||+|.||..++..+.+.....-+.++|+++++.+.+. +.|+. .....+.++.++ ++|+|++++|+..+.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-~~g~~--~~~~~~~~~~~~--~aDvViiavp~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-ELGLG--DRVTTSAAEAVK--GADLVILCVPVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hCCCC--ceecCCHHHHhc--CCCEEEECCCHHHHH
Confidence 4689999999999999999887642223558899988776654 45542 134567888776 499999999998776
Q ss_pred HHHHHHH
Q 018020 88 KWAISVA 94 (362)
Q Consensus 88 ~~~~~al 94 (362)
+++....
T Consensus 81 ~v~~~l~ 87 (307)
T PRK07502 81 AVAAEIA 87 (307)
T ss_pred HHHHHHH
Confidence 6665543
No 89
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=98.18 E-value=2.4e-05 Score=69.75 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=83.6
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEE-EcCCHHHHHHHHHHcCCCCCCcc------cCCHHHHhcCCCCc-EEEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAV-ASRSLEKATNFAKANNFPPDAKV------YGSYEALLDDKDID-AVYL 79 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v-~d~~~~~~~~~~~~~~~~~~~~~------~~~~~e~l~~~~~D-~V~i 79 (362)
+||.|.|+ |.||+..+..+.+ ++++|++. +|+... .+...+-.+. ++.+ +.+++++++. .+| +++-
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~-~~~~~~~~g~--~v~v~~~~~~~~~l~~~~~~-~~d~VvID 75 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEE-AENEAEVAGK--EILLHGPSEREARIGEVFAK-YPELICID 75 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEcccccc-ccchhhhccc--ceeeeccccccccHHHHHhh-cCCEEEEE
Confidence 58999997 8899999999888 89999998 775432 1222221221 1234 8999999953 588 8888
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
.|.|..-.+.+..|+++|+++.+-.. +.+.++.++|. +.+++.+....|+
T Consensus 76 FT~P~~~~~n~~~~~~~gv~~ViGTT-G~~~~~~~~l~---~~~~i~~l~apNf 125 (275)
T TIGR02130 76 YTHPSAVNDNAAFYGKHGIPFVMGTT-GGDREALAKLV---ADAKHPAVIAPNM 125 (275)
T ss_pred CCChHHHHHHHHHHHHCCCCEEEcCC-CCCHHHHHHHH---HhcCCCEEEECcc
Confidence 99999999999999999999887654 45677666664 3344555554444
No 90
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=98.16 E-value=5e-06 Score=77.84 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=67.2
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC------CCC--CCcccCCHHH-HhcCCCCcEEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN------FPP--DAKVYGSYEA-LLDDKDIDAVY 78 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~------~~~--~~~~~~~~~e-~l~~~~~D~V~ 78 (362)
+||+|+|+ |.+|...++.+..+|.++|+++++...+..+.+.+.+. .+. .-..+.++++ .+ .++|+|+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS--KDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh--ccCCEEE
Confidence 58999996 88999999999999999999998876554444443331 110 0001222222 22 3699999
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEE
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
.++|+..|.+++.+++++|++|+.
T Consensus 79 ~a~p~~~s~~~~~~~~~~G~~VID 102 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAEAGKPVFS 102 (341)
T ss_pred EeCCHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999886
No 91
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.16 E-value=4.2e-05 Score=78.97 Aligned_cols=155 Identities=14% Similarity=0.044 Sum_probs=102.9
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcC---------CCcEEEEEEcCCHHH-------HHHHHHHcC-CCCCCcccCCHHHH
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLA---------PNAVLSAVASRSLEK-------ATNFAKANN-FPPDAKVYGSYEAL 68 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~---------~~~~vv~v~d~~~~~-------~~~~~~~~~-~~~~~~~~~~~~e~ 68 (362)
+++++|+|+|+|..|...++.+.+. -+++|++|++++... ...+.+.+. .... .-.+.+-+.
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~-~~~~~~~e~ 534 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVE-WDEESLFLW 534 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCC-ccHHHHHHH
Confidence 4579999999999999877766432 157899999875321 111211110 0000 011222344
Q ss_pred hcC--CCCcEEEEcCCCcccHHHHHHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHHcCCEEEEe-eecccChhHHHHH
Q 018020 69 LDD--KDIDAVYLPLPTSMHVKWAISVAQKKKHLLME-K-PMALNVAEFDVILNACEENGVQLMDG-TMWVHNPRTAQMK 143 (362)
Q Consensus 69 l~~--~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~~~~~~~v~-~~~r~~p~~~~~k 143 (362)
+.. .+.++|+-+|+...-......||++||||..- | +++...+...+|.++++++|+.+... .-----|.+..++
T Consensus 535 i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~~l~ 614 (810)
T PRK09466 535 LRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINHTVR 614 (810)
T ss_pred HhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHHHHH
Confidence 432 23468888999887777778999999998853 4 34456789999999999999987643 3334678888888
Q ss_pred HhhcCCCCccceEEEEEEeee
Q 018020 144 EFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 144 ~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.++ +.| -+|..++..++.
T Consensus 615 ~l~-~~g--d~i~~i~GIlnG 632 (810)
T PRK09466 615 DLR-NSG--DSILAISGIFSG 632 (810)
T ss_pred HHH-hcc--CcEEEEEEEEcc
Confidence 887 432 278888887764
No 92
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.14 E-value=2.9e-05 Score=70.22 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=57.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
|||++||+|.||...+..|.+.. ..+++...++++++++.+. ++|+ ...++.++++++ .|+|++++++..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-~~g~----~~~~~~~e~~~~--aDvVil~v~~~~ 73 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-SLGV----KTAASNTEVVKS--SDVIILAVKPQV 73 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-HcCC----EEeCChHHHHhc--CCEEEEEECcHH
Confidence 57999999999999999987653 2265533399999887765 4664 467888888874 899999997665
Q ss_pred cHHHHHH
Q 018020 86 HVKWAIS 92 (362)
Q Consensus 86 h~~~~~~ 92 (362)
-.+++..
T Consensus 74 ~~~vl~~ 80 (266)
T PLN02688 74 VKDVLTE 80 (266)
T ss_pred HHHHHHH
Confidence 4555443
No 93
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=8.5e-05 Score=63.90 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=82.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
|+||+||+|.||...+..+.+. +.++| ++|++++..+.++++- . +..+|++++++. ..+-+|++..|...-.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~-ghdvV-~yD~n~~av~~~~~~g-a----~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG-GHDVV-GYDVNQTAVEELKDEG-A----TGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC-CCeEE-EEcCCHHHHHHHHhcC-C----ccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 5699999999999999999877 78877 7999999888876643 3 567899999875 5688999998877433
Q ss_pred HHHH----HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 88 KWAI----SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 88 ~~~~----~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.-+. ..|.+| .|+++- -..+..+..+-.+..+++|+.+.
T Consensus 74 ~~vi~~la~~L~~G-DivIDG-GNS~y~Ds~rr~~~l~~kgi~fl 116 (300)
T COG1023 74 DAVIDDLAPLLSAG-DIVIDG-GNSNYKDSLRRAKLLAEKGIHFL 116 (300)
T ss_pred HHHHHHHHhhcCCC-CEEEEC-CccchHHHHHHHHHHHhcCCeEE
Confidence 3333 344555 455553 35567888887777777777654
No 94
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.12 E-value=1.3e-05 Score=77.21 Aligned_cols=74 Identities=16% Similarity=0.315 Sum_probs=55.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--------------CCCC-CcccCCHHHHhcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--------------FPPD-AKVYGSYEALLDDKD 73 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~e~l~~~~ 73 (362)
|||+|||+|.||..++..+.+. +.+|+ ++|+++++.+.+.+... +..+ ....++++++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~-G~~V~-~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL-GHEVT-GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc-CCeEE-EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhh--
Confidence 4799999999999999998766 67765 68999998887654110 0001 3456788888764
Q ss_pred CcEEEEcCCCccc
Q 018020 74 IDAVYLPLPTSMH 86 (362)
Q Consensus 74 ~D~V~i~~~~~~h 86 (362)
+|+|++++|++.+
T Consensus 77 advvii~vpt~~~ 89 (411)
T TIGR03026 77 ADVIIICVPTPLK 89 (411)
T ss_pred CCEEEEEeCCCCC
Confidence 9999999998764
No 95
>PLN02858 fructose-bisphosphate aldolase
Probab=98.10 E-value=3.5e-05 Score=83.92 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=82.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
...+||+||+|.||..++..|.+. ++++. ++|+++++++.+.+... ...++..++++. +|+|++++|++..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~-G~~V~-v~dr~~~~~~~l~~~Ga-----~~~~s~~e~~~~--aDvVi~~V~~~~~ 393 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKS-NFSVC-GYDVYKPTLVRFENAGG-----LAGNSPAEVAKD--VDVLVIMVANEVQ 393 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHcCC-----eecCCHHHHHhc--CCEEEEecCChHH
Confidence 357899999999999999999876 67765 89999999888876532 357899999885 8999999998766
Q ss_pred HHHHH-------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH--cCCE
Q 018020 87 VKWAI-------SVAQKKKHLLMEKPMALNVAEFDVILNACEE--NGVQ 126 (362)
Q Consensus 87 ~~~~~-------~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~--~~~~ 126 (362)
.+-+. ..++.| .++++-. +.+++..+++.+.+++ .|..
T Consensus 394 v~~Vl~g~~g~~~~l~~g-~ivVd~S-TvsP~~~~~la~~l~~~g~g~~ 440 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAG-ASIVLSS-TVSPGFVIQLERRLENEGRDIK 440 (1378)
T ss_pred HHHHHhchhhHHhcCCCC-CEEEECC-CCCHHHHHHHHHHHHhhCCCcE
Confidence 54443 223344 4556643 6689999999998887 5533
No 96
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.09 E-value=2.1e-05 Score=72.71 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=68.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..+|+|||+|.||..++..+... +..-+.++++++++++.+++++|.. +..++++.+.+. +.|+|+.+|+.....
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~~~ra~~la~~~g~~--~~~~~~~~~~l~--~aDvVi~at~~~~~~ 252 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRTYERAEELAKELGGN--AVPLDELLELLN--EADVVISATGAPHYA 252 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHcCCe--EEeHHHHHHHHh--cCCEEEECCCCCchH
Confidence 57899999999999999998774 4555668999999999999998742 222345556665 489999999988775
Q ss_pred HHHHHHHHc---CCeEEEeC
Q 018020 88 KWAISVAQK---KKHLLMEK 104 (362)
Q Consensus 88 ~~~~~al~~---gk~V~~EK 104 (362)
+....+++. +..++++=
T Consensus 253 ~~~~~~~~~~~~~~~~viDl 272 (311)
T cd05213 253 KIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred HHHHHHHhhCCCCCeEEEEe
Confidence 666665543 24566664
No 97
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=98.08 E-value=0.00061 Score=62.39 Aligned_cols=214 Identities=13% Similarity=0.142 Sum_probs=136.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCC-cEEEEEE-cCCHHHHHHHHHHcCCCC-----------------CCcc---cCCH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPN-AVLSAVA-SRSLEKATNFAKANNFPP-----------------DAKV---YGSY 65 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v~-d~~~~~~~~~~~~~~~~~-----------------~~~~---~~~~ 65 (362)
.|+.|+|. |+||..-+..++++|+ |+|+++. .++.+.+.+.+++|+... ++.+ .+.+
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~~~~v~~G~~~l 81 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLLPGTEVLVGEEGL 81 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhhccCceEEecHHHH
Confidence 57899995 9999999999999986 8999866 467777777778876321 0111 1334
Q ss_pred HHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHh
Q 018020 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEF 145 (362)
Q Consensus 66 ~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~ 145 (362)
.|+++.+++|.|+.+.--..-..-..+|+++||.|.+---=+ =+....-+.++++++|..+.. -......+-++
T Consensus 82 ~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANKEs-LV~aG~l~~~~~k~~g~~llP-----VDSEH~AifQ~ 155 (385)
T COG0743 82 CELAAEDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANKES-LVTAGELVMDAAKESGAQLLP-----VDSEHNAIFQC 155 (385)
T ss_pred HHHHhcCCCCEEeehhhhhcccHHHHHHHHcCCceeecchhh-hhcccHHHHHHHHHcCCEEec-----cCchhHHHHHH
Confidence 566677789999999888888888999999999998643211 133445567889999988873 34556677778
Q ss_pred hcCCCCccceEEEEEEeeecCCccc--------------ccCccCcCCCCCC-CcccccccchHHHHHHHHccCCCCcEE
Q 018020 146 VSDPQRFGQLRTMHSCFSFAGDAEF--------------LKNDIRVKPDLDG-LGALGDAGWYGIRSILWANDYELPKTV 210 (362)
Q Consensus 146 i~~~g~iG~i~~i~~~~~~~~~~~~--------------~~~~w~~~~~~~g-gg~l~~~g~h~id~~~~l~g~~~~~~V 210 (362)
+ .....+.|..+-..-+..+...+ ..++|..-+...- .--|.|-|--.|. ..||||. +.+++
T Consensus 156 L-~~~~~~~v~~iiLTASGGpFR~~~~~~L~~VT~eqAl~HPnWsMG~KITvDSATmmNKGLEvIE-A~~LF~~-~~~~I 232 (385)
T COG0743 156 L-QGETQKGVKKIILTASGGPFRDKSLEELANVTPEQALKHPNWSMGRKITVDSATMMNKGLEVIE-AHWLFGL-PYEQI 232 (385)
T ss_pred c-CccccCcceEEEEecCCCCcCCCCHHHHccCCHHHHhcCCCCCCCCcccccHHHHhhhhHHHHH-HHHHhCC-CHHHe
Confidence 7 55555667766554433221111 1134543221110 0112232222221 4789985 46777
Q ss_pred EEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 211 IAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 211 ~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
.....+ ....+.+++|.||.+
T Consensus 233 eVvIHP-------QSiIHsmV~~~DGSv 253 (385)
T COG0743 233 EVVIHP-------QSIIHSMVEYVDGSV 253 (385)
T ss_pred eEEEcc-------cchheeeEEeccCCE
Confidence 766322 235678999999865
No 98
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.07 E-value=1.5e-05 Score=67.68 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=62.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----------------CCCcccCCHHHHhcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----------------PDAKVYGSYEALLDDK 72 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~e~l~~~ 72 (362)
|||+|||+|+.|...+-.+.+. +++++ .+|.++++.+.+.+.. .| ....+.+++++.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G~~V~-g~D~~~~~v~~l~~g~-~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-GHQVI-GVDIDEEKVEALNNGE-LPIYEPGLDELLKENVSAGRLRATTDIEEAIKD- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-TSEEE-EE-S-HHHHHHHHTTS-SSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHHhC-CCEEE-EEeCChHHHHHHhhcc-ccccccchhhhhccccccccchhhhhhhhhhhc-
Confidence 6899999999999999999877 78877 6899998887764321 10 123456777776665
Q ss_pred CCcEEEEcCCCcccH------H-------HHHHHHHcCCeEEEeC--CCCCCHHHHHHHHHHHHHc
Q 018020 73 DIDAVYLPLPTSMHV------K-------WAISVAQKKKHLLMEK--PMALNVAEFDVILNACEEN 123 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~------~-------~~~~al~~gk~V~~EK--P~~~~~~~~~~l~~~a~~~ 123 (362)
.|+++||.|++... . .+...++.|+-|.+|- |.+.+.+-.+.+++.....
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~ 141 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGK 141 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCT
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhccc
Confidence 88888888765421 1 2223344455566665 4444444555555544443
No 99
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.07 E-value=7.4e-05 Score=67.88 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=67.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCC-cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPN-AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~-~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||+|||+|.||..++..+.+... .+| .++|+++++.+.+ .+.|+. ....+.+++.+ .|+|++++|+....
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v-~~~d~~~~~~~~~-~~~g~~---~~~~~~~~~~~---aD~Vilavp~~~~~ 72 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKV-YGYDHNELHLKKA-LELGLV---DEIVSFEELKK---CDVIFLAIPVDAII 72 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEE-EEEcCCHHHHHHH-HHCCCC---cccCCHHHHhc---CCEEEEeCcHHHHH
Confidence 479999999999999999986632 354 4689999887765 456642 23457777542 89999999999888
Q ss_pred HHHHHHHH--cCCeEEEeCCCCCCHHHHHH
Q 018020 88 KWAISVAQ--KKKHLLMEKPMALNVAEFDV 115 (362)
Q Consensus 88 ~~~~~al~--~gk~V~~EKP~~~~~~~~~~ 115 (362)
+++..... .| .++++ ++.+.....+
T Consensus 73 ~~~~~l~~l~~~-~iv~d--~gs~k~~i~~ 99 (275)
T PRK08507 73 EILPKLLDIKEN-TTIID--LGSTKAKIIE 99 (275)
T ss_pred HHHHHHhccCCC-CEEEE--CccchHHHHH
Confidence 87776543 33 36665 4554444433
No 100
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.05 E-value=1e-05 Score=65.22 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=68.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+.-|+.|||+|.+|+..+..+... +++-+.+++|+.+++++++++++-. -.+.-++++.+.+.. .|+|+.+||...
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~--~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQE--ADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHT--ESEEEE-SSTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhh--CCeEEEecCCCC
Confidence 356899999999999999999888 6665669999999999999998311 012335666666775 999999999865
Q ss_pred cHHHHHHHHHcCC---eEEEeC
Q 018020 86 HVKWAISVAQKKK---HLLMEK 104 (362)
Q Consensus 86 h~~~~~~al~~gk---~V~~EK 104 (362)
+ .+-...++... .++++=
T Consensus 88 ~-~i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 88 P-IITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp T-SSTHHHHTTTCHHCSEEEES
T ss_pred c-ccCHHHHHHHHhhhhceecc
Confidence 5 44455555554 477774
No 101
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.04 E-value=5.9e-05 Score=72.54 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=51.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhc-------------CCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLD-------------DKDI 74 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~-------------~~~~ 74 (362)
++||+|||+|+||...+..|.+. +++|+ ++|+++++.+.+.. -.++ ..-.++++++. ..+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~-G~~V~-~~D~~~~~v~~l~~-g~~~---~~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR-QKQVI-GVDINQHAVDTINR-GEIH---IVEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC-CCEEE-EEeCCHHHHHHHHC-CCCC---cCCCCHHHHHHHHhhcCceeeecccccC
Confidence 58999999999999999999877 67766 68999998887532 2222 12344555432 1268
Q ss_pred cEEEEcCCCc
Q 018020 75 DAVYLPLPTS 84 (362)
Q Consensus 75 D~V~i~~~~~ 84 (362)
|+|++|+|++
T Consensus 77 Dvvii~vptp 86 (415)
T PRK11064 77 DAFLIAVPTP 86 (415)
T ss_pred CEEEEEcCCC
Confidence 9999999986
No 102
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.03 E-value=2.4e-05 Score=71.35 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=65.6
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCC---C-cccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPD---A-KVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~---~-~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
++||+|||+ |..|...++.|..||++++. .+..++.+-+.+.+.+---.+ . -..-|.+++ ...++|+|+.|+|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~-~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlalP 79 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELI-LISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLALP 79 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEE-EeechhhcCCchHHhCcccccccccccccCChhhh-hcccCCEEEEecC
Confidence 699999997 88899999999999999955 444433344555555410000 0 011233444 3446999999999
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
+..-.+++...++.|..|+
T Consensus 80 hg~s~~~v~~l~~~g~~VI 98 (349)
T COG0002 80 HGVSAELVPELLEAGCKVI 98 (349)
T ss_pred chhHHHHHHHHHhCCCeEE
Confidence 9999999999999998765
No 103
>PLN02858 fructose-bisphosphate aldolase
Probab=98.01 E-value=9.2e-05 Score=80.72 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=85.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
--|||+||+|.||..++..|.+. ++++. ++|+++++++.+++. | +..++|..|+.+. +|+|+++.|+..+.
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~-G~~v~-v~dr~~~~~~~l~~~-G----a~~~~s~~e~a~~--advVi~~l~~~~~v 74 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRS-GFKVQ-AFEISTPLMEKFCEL-G----GHRCDSPAEAAKD--AAALVVVLSHPDQV 74 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHC-CCeEE-EEcCCHHHHHHHHHc-C----CeecCCHHHHHhc--CCEEEEEcCChHHH
Confidence 45799999999999999999877 67765 899999999998764 3 3578999999986 89999999999876
Q ss_pred HHHH----HHHH---cCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 88 KWAI----SVAQ---KKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 88 ~~~~----~al~---~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
+-+. .++. .| .++++-- +.+++..+++.+.+++.|
T Consensus 75 ~~V~~g~~g~~~~l~~g-~iivd~S-Ti~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 75 DDVFFGDEGAAKGLQKG-AVILIRS-TILPLQLQKLEKKLTERK 116 (1378)
T ss_pred HHHHhchhhHHhcCCCc-CEEEECC-CCCHHHHHHHHHHHHhcC
Confidence 6664 1232 33 5777744 678999999999988877
No 104
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=98.00 E-value=4.2e-05 Score=70.80 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=69.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC--HHHHHHHHH---HcCCCCC--Ccc-----------------c
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS--LEKATNFAK---ANNFPPD--AKV-----------------Y 62 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~--~~~~~~~~~---~~~~~~~--~~~-----------------~ 62 (362)
+++||||+|+|.||+.|++.+.+.|++++++|+|++ .+....+-+ .+|.-++ +.. .
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEc
Confidence 369999999999999999998888999999999964 343333211 0121111 110 0
Q ss_pred CCHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 63 GSYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 63 ~~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
.+.+++ ..+.++|+|+-||......+.+...+++| |-|++--|
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap 128 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAP 128 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCC
Confidence 112222 22247999999999999999999999999 66666555
No 105
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.99 E-value=0.0001 Score=71.24 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=66.2
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||+||| +|.||...+..+++. +.++. +++++++++...+.++|+ ...++.++.+.. .|+|++++|+....
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~-G~~V~-v~~r~~~~~~~~a~~~gv----~~~~~~~e~~~~--aDvVIlavp~~~~~ 72 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK-GFEVI-VTGRDPKKGKEVAKELGV----EYANDNIDAAKD--ADIVIISVPINVTE 72 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC-CCEEE-EEECChHHHHHHHHHcCC----eeccCHHHHhcc--CCEEEEecCHHHHH
Confidence 4799998 899999999999876 56654 678998887788888875 356788888775 89999999998766
Q ss_pred HHHHHHHHc--CCeEEEe
Q 018020 88 KWAISVAQK--KKHLLME 103 (362)
Q Consensus 88 ~~~~~al~~--gk~V~~E 103 (362)
+++...... ...++++
T Consensus 73 ~vl~~l~~~l~~~~iViD 90 (437)
T PRK08655 73 DVIKEVAPHVKEGSLLMD 90 (437)
T ss_pred HHHHHHHhhCCCCCEEEE
Confidence 666655432 2246665
No 106
>PLN02712 arogenate dehydrogenase
Probab=97.98 E-value=8e-05 Score=75.56 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=64.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+++||+|||+|.||..++..+++. +.+|++ +|++..+ ..+.++|+ ..+.++++++.. +.|+|++|+|+..-
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~-G~~V~~-~dr~~~~--~~A~~~Gv----~~~~d~~e~~~~-~aDvViLavP~~~~ 121 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ-GHTVLA-HSRSDHS--LAARSLGV----SFFLDPHDLCER-HPDVILLCTSIIST 121 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-CCEEEE-EeCCHHH--HHHHHcCC----EEeCCHHHHhhc-CCCEEEEcCCHHHH
Confidence 468999999999999999999877 578764 6777543 34666775 467889997653 58999999998766
Q ss_pred HHHHHHHH-Hc-C-CeEEEe
Q 018020 87 VKWAISVA-QK-K-KHLLME 103 (362)
Q Consensus 87 ~~~~~~al-~~-g-k~V~~E 103 (362)
.+++.... .. . ..++++
T Consensus 122 ~~vl~~l~~~~l~~g~iVvD 141 (667)
T PLN02712 122 ENVLKSLPLQRLKRNTLFVD 141 (667)
T ss_pred HHHHHhhhhhcCCCCeEEEE
Confidence 66665532 11 1 246766
No 107
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.98 E-value=8.5e-05 Score=71.51 Aligned_cols=72 Identities=10% Similarity=0.147 Sum_probs=51.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-------------CCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-------------DAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~e~l~~~~ 73 (362)
.+|||++||+|+||..++..+.+ +++|+ ++|+++++.+.+.+ |..+ ...+.++. +.++ +
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~--~~~V~-g~D~~~~~ve~l~~--G~~~~~e~~~~~l~~~g~l~~t~~~-~~~~--~ 76 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK--SRQVV-GFDVNKKRILELKN--GVDVNLETTEEELREARYLKFTSEI-EKIK--E 76 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc--CCEEE-EEeCCHHHHHHHHC--cCCCCCCCCHHHHHhhCCeeEEeCH-HHHc--C
Confidence 36899999999999999888765 37866 69999999988872 2211 01223344 4455 4
Q ss_pred CcEEEEcCCCccc
Q 018020 74 IDAVYLPLPTSMH 86 (362)
Q Consensus 74 ~D~V~i~~~~~~h 86 (362)
.|++++|.|++.+
T Consensus 77 advvii~Vptp~~ 89 (425)
T PRK15182 77 CNFYIITVPTPIN 89 (425)
T ss_pred CCEEEEEcCCCCC
Confidence 8999998887743
No 108
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=97.97 E-value=0.00011 Score=59.95 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=67.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CHHHHHHHHH---HcCCCCCCccc-----------------CCHHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SLEKATNFAK---ANNFPPDAKVY-----------------GSYEA 67 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~~~~~~~---~~~~~~~~~~~-----------------~~~~e 67 (362)
+||+|+|+|.||+.+++.+...+++++++++|+ +++....+.+ .+|..+....+ .++.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~~ 80 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPAN 80 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChHH
Confidence 589999999999999999988899999999995 6665555433 23322110000 22233
Q ss_pred H-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 68 L-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 68 ~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+ ..+.++|+|+=||.-....+-+..=+++| |.|++--|.
T Consensus 81 ~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~ 121 (149)
T smart00846 81 LPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA 121 (149)
T ss_pred CcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC
Confidence 3 13346799998887777777777788888 888887663
No 109
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=97.94 E-value=0.0025 Score=59.48 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=129.9
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCC-cEEEEEEc-CCHHHHHHHHHHcCCCC---------------------CCcccC-
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPN-AVLSAVAS-RSLEKATNFAKANNFPP---------------------DAKVYG- 63 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v~d-~~~~~~~~~~~~~~~~~---------------------~~~~~~- 63 (362)
.||+|+|. |++|..-+..++++|+ ++|++++- .+.+.+.+.+++|+... +++++.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G 81 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLVG 81 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEEC
Confidence 37999995 9999999999988875 99999774 56667777777775210 011221
Q ss_pred --CHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCC-HHHHHHHHHHHHHcCCEEEEeeecccChhHH
Q 018020 64 --SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALN-VAEFDVILNACEENGVQLMDGTMWVHNPRTA 140 (362)
Q Consensus 64 --~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~-~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 140 (362)
.+.++.+.+++|.|+.+.--..-......|+++||.|.+--- .+ +....-+.+.+++++..+.. -.....
T Consensus 82 ~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANK--EsLV~aG~li~~~a~~~~~~I~P-----VDSEHs 154 (389)
T TIGR00243 82 EEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALANK--ESLVTAGHLFLDAVKKYGVQLLP-----VDSEHN 154 (389)
T ss_pred HHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEech--hHHHhhHHHHHHHHHHcCCeEEe-----ecchHh
Confidence 233445556799999999999999999999999999886422 23 33344456788888876653 344556
Q ss_pred HHHHhhcCCC-CccceEEEEEEeeecCCccc--------------ccCccCcCCCCCCCcccccccc---hHHHH--HHH
Q 018020 141 QMKEFVSDPQ-RFGQLRTMHSCFSFAGDAEF--------------LKNDIRVKPDLDGLGALGDAGW---YGIRS--ILW 200 (362)
Q Consensus 141 ~~k~~i~~~g-~iG~i~~i~~~~~~~~~~~~--------------~~~~w~~~~~~~ggg~l~~~g~---h~id~--~~~ 200 (362)
.+-+++ .+| ...+|..+-..-+..+...+ ..++|..-+ .+-.|-.+ -.+.+ ..|
T Consensus 155 AIfQ~L-~~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vt~~~AL~HP~W~MG~-----KITIDSATmmNKglEvIEA~~ 228 (389)
T TIGR00243 155 AIFQSL-QHGLEELGVVSIILTASGGAFRDTPLEDLPTVTPQQALKHPNWSMGR-----KITIDSATMMNKGLEYIEARW 228 (389)
T ss_pred HHHHHc-ccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCC-----eeeeehHhhhhhhHHHHHHHH
Confidence 677777 423 22346655554433221110 113343321 23233211 11223 478
Q ss_pred HccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 201 ANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 201 l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
|||. ++.++.....+ ....+.+++|.||.+
T Consensus 229 LF~~-~~d~I~vvIHp-------qSiIHsmVef~DGSv 258 (389)
T TIGR00243 229 LFGA-SAEQIDVLIHP-------QSIIHSMVEFQDGSV 258 (389)
T ss_pred HcCC-CHHHeEEEECC-------CCceeEEEEEcCccE
Confidence 8985 36777777322 236788999999976
No 110
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.94 E-value=4.9e-05 Score=70.07 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=58.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+..+|+|||+|.||..++..|+.. +++++. +++..++....+++.|+. . .|.+++++. .|+|++++|+..+
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~s-G~~Vvv-~~r~~~~s~~~A~~~G~~----~-~s~~eaa~~--ADVVvLaVPd~~~ 86 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDS-GVDVVV-GLREGSKSWKKAEADGFE----V-LTVAEAAKW--ADVIMILLPDEVQ 86 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHC-CCEEEE-EECCchhhHHHHHHCCCe----e-CCHHHHHhc--CCEEEEcCCHHHH
Confidence 346899999999999999999876 677764 455544555556667753 3 388999886 8999999999988
Q ss_pred HHHH
Q 018020 87 VKWA 90 (362)
Q Consensus 87 ~~~~ 90 (362)
..++
T Consensus 87 ~~V~ 90 (330)
T PRK05479 87 AEVY 90 (330)
T ss_pred HHHH
Confidence 7776
No 111
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.93 E-value=4.4e-05 Score=59.71 Aligned_cols=100 Identities=18% Similarity=0.285 Sum_probs=70.3
Q ss_pred EEEEEec----cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 10 RFGIIGA----ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 10 ~v~iiG~----G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+|+|||+ +..|...+..+++. ++++..|-.+. . +-.| ..+|.+++| . -..+|++++++|+..
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~~-~------~i~G----~~~y~sl~e-~-p~~iDlavv~~~~~~ 67 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPKG-G------EILG----IKCYPSLAE-I-PEPIDLAVVCVPPDK 67 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTTC-S------EETT----EE-BSSGGG-C-SST-SEEEE-S-HHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCCc-e------EECc----EEeeccccC-C-CCCCCEEEEEcCHHH
Confidence 5899995 56788889998884 78877664332 1 1123 368999999 3 347999999999999
Q ss_pred cHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 86 HVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 86 h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
-.+++.+|.+.| +.|++..- ..-+++.+.|+++|+.+.
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g-----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG-----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT-----S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHcCCCEEEEEcc-----hHHHHHHHHHHHcCCEEE
Confidence 999999999999 77777532 677788999999999876
No 112
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.93 E-value=3.6e-05 Score=70.59 Aligned_cols=117 Identities=17% Similarity=0.108 Sum_probs=83.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--CCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--PPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.-+++|||+|..|..|+..+.....++=+-|++|+++++++|++++.- ...+...+|.++.+.. .|+|+-+|+...
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~--aDIV~taT~s~~ 194 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD--ADTITSITNSDT 194 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEecCCCC
Confidence 467999999999999999998887788888999999999998877531 1124567999999975 999999998653
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
+-+-..-++.|.||.. ++.+..+.+|+-...-+....+++.
T Consensus 195 -P~~~~~~l~pg~hV~a---iGs~~p~~~El~~~~l~~a~~v~vD 235 (301)
T PRK06407 195 -PIFNRKYLGDEYHVNL---AGSNYPNRREAEHSVLNDADIVVTE 235 (301)
T ss_pred -cEecHHHcCCCceEEe---cCCCCCCcccCCHHHHHhCCEEEEC
Confidence 2222456788999886 4444444444443332223334444
No 113
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.92 E-value=7.9e-05 Score=67.84 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=61.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||+|||+|.||...+..+.+. +.+|. ++|+++++.+.+.+...+. ...++. +.+. +.|+|++|+|+....+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~-g~~V~-~~d~~~~~~~~a~~~g~~~---~~~~~~-~~~~--~aDlVilavp~~~~~~ 72 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL-GHTVY-GVSRRESTCERAIERGLVD---EASTDL-SLLK--DCDLVILALPIGLLLP 72 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHCCCcc---cccCCH-hHhc--CCCEEEEcCCHHHHHH
Confidence 4799999999999999999876 56654 7899988877765543221 223444 4454 5999999999988777
Q ss_pred HHHHHHHc--CCeEEEe
Q 018020 89 WAISVAQK--KKHLLME 103 (362)
Q Consensus 89 ~~~~al~~--gk~V~~E 103 (362)
++...... ...++++
T Consensus 73 ~~~~l~~~l~~~~ii~d 89 (279)
T PRK07417 73 PSEQLIPALPPEAIVTD 89 (279)
T ss_pred HHHHHHHhCCCCcEEEe
Confidence 76655543 2345554
No 114
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=97.90 E-value=0.00021 Score=56.45 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=68.2
Q ss_pred EEEEec-cHHHHHHHHHHhcCC-CcEEEEEE-cCCHHHHHHHHHHcCCC---------------------CCCcccCC--
Q 018020 11 FGIIGA-ADIARKLSRAITLAP-NAVLSAVA-SRSLEKATNFAKANNFP---------------------PDAKVYGS-- 64 (362)
Q Consensus 11 v~iiG~-G~~g~~~~~~~~~~~-~~~vv~v~-d~~~~~~~~~~~~~~~~---------------------~~~~~~~~-- 64 (362)
|.|+|+ |++|+.-+..++++| .++|+++. .++.+.+.+.+++|+.+ ++++++..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 679995 999999999999998 59999965 45667777777777532 01222222
Q ss_pred -HHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEE
Q 018020 65 -YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 65 -~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
+.++.+.+++|.|+.+..-..-..-...|+++||.|.+
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence 33566667999999999999999999999999999875
No 115
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.88 E-value=6.3e-05 Score=69.43 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=84.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc---CCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN---NFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.-+++|||+|..|..|+..+.....++-+-|++|+++++++|++.. +++ +...+|.++.+.. .|+|+-+|+..
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~--v~~~~~~~~av~~--ADIV~taT~s~ 203 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFA--VNTTLDAAEVAHA--ANLIVTTTPSR 203 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCc--EEEECCHHHHhcC--CCEEEEecCCC
Confidence 4679999999999999999887777888889999999999988765 332 3457899999975 99999998865
Q ss_pred ccHHHH-HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 85 MHVKWA-ISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 85 ~h~~~~-~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
. +++ .+-++.|.||.. ++.+..+.+|+-...-+....+.+.
T Consensus 204 ~--P~~~~~~l~~G~hi~~---iGs~~p~~~Eld~~~l~~a~~vvvD 245 (315)
T PRK06823 204 E--PLLQAEDIQPGTHITA---VGADSPGKQELDAELVARADKILVD 245 (315)
T ss_pred C--ceeCHHHcCCCcEEEe---cCCCCcccccCCHHHHhhCCEEEEC
Confidence 3 333 457789999985 6666666666654443333334444
No 116
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.87 E-value=9.8e-05 Score=68.70 Aligned_cols=78 Identities=14% Similarity=0.258 Sum_probs=58.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC---------CCCCcccCCHHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF---------PPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|||+|||+|.||..++..+.+. +.++ .+++++++..+.+.++... +.+....++.++.++. +|+|++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~-g~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~D~vi~ 77 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN-GHDV-TLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD--ADLILV 77 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEE-EEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC--CCEEEE
Confidence 5899999999999999998766 5665 5889999888887765210 1123456788888764 899999
Q ss_pred cCCCcccHHHH
Q 018020 80 PLPTSMHVKWA 90 (362)
Q Consensus 80 ~~~~~~h~~~~ 90 (362)
++|+..-.+++
T Consensus 78 ~v~~~~~~~v~ 88 (325)
T PRK00094 78 AVPSQALREVL 88 (325)
T ss_pred eCCHHHHHHHH
Confidence 99996433333
No 117
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.83 E-value=0.00012 Score=67.41 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=55.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..||+|||+|.||..++..|++. +++++...+++.++.+.+. +.|+ .+ .+..++++. .|+|++++|+..+.
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~s-G~~Viv~~~~~~~~~~~a~-~~Gv----~~-~s~~ea~~~--ADiVvLaVpp~~~~ 73 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDS-GLNVIVGLRKGGASWKKAT-EDGF----KV-GTVEEAIPQ--ADLIMNLLPDEVQH 73 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC-CCeEEEEECcChhhHHHHH-HCCC----EE-CCHHHHHhc--CCEEEEeCCcHhHH
Confidence 46799999999999999999876 5677655666555555544 5565 23 357887764 89999999998565
Q ss_pred HHHHH
Q 018020 88 KWAIS 92 (362)
Q Consensus 88 ~~~~~ 92 (362)
..+..
T Consensus 74 ~~v~~ 78 (314)
T TIGR00465 74 EVYEA 78 (314)
T ss_pred HHHHH
Confidence 55544
No 118
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.80 E-value=7.4e-05 Score=60.92 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=60.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-+|+|||+|+.|..|+.+|++. +++|+ |..+..++..+.+++-|+. ..+..|..+. .|+|++.+|+..|.
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS-G~~V~-Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~--aDvV~~L~PD~~q~ 74 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS-GVNVI-VGLREGSASWEKAKADGFE-----VMSVAEAVKK--ADVVMLLLPDEVQP 74 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC-C-EEE-EEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC---SEEEE-S-HHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhC-CCCEE-EEecCCCcCHHHHHHCCCe-----eccHHHHHhh--CCEEEEeCChHHHH
Confidence 35799999999999999999988 77766 4445444455556677763 3588888886 99999999999997
Q ss_pred HHH----HHHHHcCCeEEEeCCC
Q 018020 88 KWA----ISVAQKKKHLLMEKPM 106 (362)
Q Consensus 88 ~~~----~~al~~gk~V~~EKP~ 106 (362)
++- ..-|+.|+.+..--.+
T Consensus 75 ~vy~~~I~p~l~~G~~L~fahGf 97 (165)
T PF07991_consen 75 EVYEEEIAPNLKPGATLVFAHGF 97 (165)
T ss_dssp HHHHHHHHHHS-TT-EEEESSSH
T ss_pred HHHHHHHHhhCCCCCEEEeCCcc
Confidence 765 4466777766654443
No 119
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=97.80 E-value=0.004 Score=58.08 Aligned_cols=205 Identities=13% Similarity=0.111 Sum_probs=127.7
Q ss_pred EEe-ccHHHHHHHHHHhcCCC-cEEEEEEc-CCHHHHHHHHHHcCCCC-------------------CCccc---CCHHH
Q 018020 13 IIG-AADIARKLSRAITLAPN-AVLSAVAS-RSLEKATNFAKANNFPP-------------------DAKVY---GSYEA 67 (362)
Q Consensus 13 iiG-~G~~g~~~~~~~~~~~~-~~vv~v~d-~~~~~~~~~~~~~~~~~-------------------~~~~~---~~~~e 67 (362)
|+| +|++|..-+..++++|+ ++|+++.- ++.+.+.+.+++|+... ++.++ +.+.+
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~~ 80 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLIA 80 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHHH
Confidence 456 49999999999988865 99999764 56677777777775210 01111 12335
Q ss_pred HhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCC-HHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALN-VAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 68 ~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~-~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
+++.+++|.|+.+..-..-......|+++||.|.+--- .+ +....-+.+.+++++..+.. -......+-|++
T Consensus 81 l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANK--ESLV~aG~li~~~~~~~~~~iiP-----VDSEHsAIfQ~L 153 (383)
T PRK12464 81 VATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALANK--ETLVAAGHIVTDLAKQNGCRLIP-----VDSEHSAIFQCL 153 (383)
T ss_pred HHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEech--hhHhhhHHHHHHHHHHcCCeEEe-----echhHHHHHHHc
Confidence 55667899999999999999999999999999886422 13 34445566788888876653 345556677777
Q ss_pred cCCCCccceEEEEEEeeecCCccc--------------ccCccCcCCCCCCCcccccccc---hHHHH--HHHHccCCCC
Q 018020 147 SDPQRFGQLRTMHSCFSFAGDAEF--------------LKNDIRVKPDLDGLGALGDAGW---YGIRS--ILWANDYELP 207 (362)
Q Consensus 147 ~~~g~iG~i~~i~~~~~~~~~~~~--------------~~~~w~~~~~~~ggg~l~~~g~---h~id~--~~~l~g~~~~ 207 (362)
..+...+|..+...-+..+...+ ..++|..-+ .+-.|-.+ -.+.+ ..|||+. ++
T Consensus 154 -~~~~~~~v~kiiLTASGGpFr~~~~e~l~~vT~~~AL~HP~W~MG~-----KITIDSATmmNKglEvIEA~~LF~i-~~ 226 (383)
T PRK12464 154 -NGENNKEIDKLIVTASGGAFRDKTREEMATLTAKDALKHPNWLMGA-----KLTIDSATLMNKGFEVIEAHWLFDI-PY 226 (383)
T ss_pred -cCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCC-----eeeeehHhhhhhhHHHHHHHHHcCC-CH
Confidence 43333346665555443221110 113444321 23223211 11222 4788985 36
Q ss_pred cEEEEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 208 KTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 208 ~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
+++.....+ ....+.+++|.||.+
T Consensus 227 d~I~vvIHP-------qSiVHsmVef~DGSv 250 (383)
T PRK12464 227 EKIDVLIHK-------ESIIHSLVEFIDGSV 250 (383)
T ss_pred HHeEEEECC-------CCceeEEEEEcCccE
Confidence 777777422 236788999999976
No 120
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.78 E-value=0.00022 Score=67.83 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=49.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC------CC-----CCCcc--cCCHHHHhcCCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN------FP-----PDAKV--YGSYEALLDDKDID 75 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~------~~-----~~~~~--~~~~~e~l~~~~~D 75 (362)
|||+|||+|.||...+..+. . +++|+ ++|+++++.+.+.+..- +. ...++ ..+..+.++ +.|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~-G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~--~ad 75 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q-NHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR--DAD 75 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h-CCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc--CCC
Confidence 47999999999999886665 4 67766 78999999887765110 00 00122 233556655 489
Q ss_pred EEEEcCCCc
Q 018020 76 AVYLPLPTS 84 (362)
Q Consensus 76 ~V~i~~~~~ 84 (362)
+|++++|++
T Consensus 76 ~vii~Vpt~ 84 (388)
T PRK15057 76 YVIIATPTD 84 (388)
T ss_pred EEEEeCCCC
Confidence 999999977
No 121
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=97.78 E-value=0.00012 Score=66.74 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=61.8
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.||+|+|+ |+.|...++.|.+||+++++.+.++.. +. -.+.++++++ +|+|+.++|+....
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-------~~~~~~~~~~--~D~vFlalp~~~s~ 63 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-------AAERAKLLNA--ADVAILCLPDDAAR 63 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-------cCCHhHhhcC--CCEEEECCCHHHHH
Confidence 48999997 888999999999999999999987642 11 1245566664 99999999999999
Q ss_pred HHHHHHHHcCCeEE
Q 018020 88 KWAISVAQKKKHLL 101 (362)
Q Consensus 88 ~~~~~al~~gk~V~ 101 (362)
+++..+.++|..|+
T Consensus 64 ~~~~~~~~~g~~VI 77 (310)
T TIGR01851 64 EAVSLVDNPNTCII 77 (310)
T ss_pred HHHHHHHhCCCEEE
Confidence 99999988887665
No 122
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.78 E-value=8.2e-05 Score=67.68 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=82.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-++.|+|+|.+|+..+..+... ++.-+.|++|+.+++++++++++....+.+..+..+.+. +.|+|+.+||...+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~--~~DivInaTp~g~~~ 199 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDL-GVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELA--DFDLIINATSAGMSG 199 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccc--cCCEEEECCcCCCCC
Confidence 34799999999999999999877 433355899999999999988752110111112334443 599999999987764
Q ss_pred -----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH
Q 018020 88 -----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA 140 (362)
Q Consensus 88 -----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 140 (362)
++....+..+..| +| +..++.+ ..+++.|++.|+.+.-|...-.+....
T Consensus 200 ~~~~~~~~~~~l~~~~~v-~D--ivY~P~~-T~ll~~A~~~G~~~~~G~~Ml~~Qa~~ 253 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIV-YD--MIYGPLP-TPFLAWAKAQGARTIDGLGMLVHQAAE 253 (278)
T ss_pred CCCCCCCCHHHcCCCCEE-EE--eecCCCC-CHHHHHHHHCcCeecCCHHHHHHHHHH
Confidence 2334555555443 33 2333322 567788999999888775554433333
No 123
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.78 E-value=0.00055 Score=58.98 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=74.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc-c
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS-M 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~-~ 85 (362)
+.++|+|+|+|.+|...+..|.+. +.+|+ ++|+++++++.+++.++. ... +.++++.. ++|+++-+.... .
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~-G~~Vv-v~D~~~~~~~~~~~~~g~----~~v-~~~~l~~~-~~Dv~vp~A~~~~I 98 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEE-GAKLI-VADINEEAVARAAELFGA----TVV-APEEIYSV-DADVFAPCALGGVI 98 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHHHHHHcCC----EEE-cchhhccc-cCCEEEeccccccc
Confidence 347899999999999999999877 78888 899999999988888763 333 44677764 699999665543 3
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCH-HHHHHHHHHHHHcCCEEEE
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNV-AEFDVILNACEENGVQLMD 129 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~-~~~~~l~~~a~~~~~~~~v 129 (362)
..+.+ +.+ +..+++|.--.... .++ .+..++.|+.+..
T Consensus 99 ~~~~~-~~l--~~~~v~~~AN~~~~~~~~---~~~L~~~Gi~~~P 137 (200)
T cd01075 99 NDDTI-PQL--KAKAIAGAANNQLADPRH---GQMLHERGILYAP 137 (200)
T ss_pred CHHHH-HHc--CCCEEEECCcCccCCHhH---HHHHHHCCCEEeC
Confidence 33333 333 45678887322222 333 3445677877654
No 124
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.76 E-value=9.5e-05 Score=67.38 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=79.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-+++|||+|.+|+..+..++.. +++|. +++|++++...+. +.+.. ...++++++++. +.|+|++++|...-.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~-G~~V~-v~~R~~~~~~~~~-~~g~~--~~~~~~l~~~l~--~aDiVint~P~~ii~ 223 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL-GARVF-VGARSSADLARIT-EMGLI--PFPLNKLEEKVA--EIDIVINTIPALVLT 223 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHH-HCCCe--eecHHHHHHHhc--cCCEEEECCChHHhC
Confidence 35899999999999999999887 57755 8899987765543 44432 122456777776 499999999876432
Q ss_pred HHHHHHHHcCCeEEEe---CCCCCCHHHHHHHHHHHHHcCCEEE--EeeecccChhH
Q 018020 88 KWAISVAQKKKHLLME---KPMALNVAEFDVILNACEENGVQLM--DGTMWVHNPRT 139 (362)
Q Consensus 88 ~~~~~al~~gk~V~~E---KP~~~~~~~~~~l~~~a~~~~~~~~--v~~~~r~~p~~ 139 (362)
.-....++.+ .++++ +|..++. +.|++.|++.. .|.+-++.|..
T Consensus 224 ~~~l~~~k~~-aliIDlas~Pg~tdf-------~~Ak~~G~~a~~~~glPg~~ap~t 272 (287)
T TIGR02853 224 ADVLSKLPKH-AVIIDLASKPGGTDF-------EYAKKRGIKALLAPGLPGIVAPKT 272 (287)
T ss_pred HHHHhcCCCC-eEEEEeCcCCCCCCH-------HHHHHCCCEEEEeCCCCcccCchh
Confidence 3233444444 34544 4655554 46788887766 66777887754
No 125
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.76 E-value=8.5e-05 Score=68.04 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=61.7
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||+|||+ |..|...++.|.+||.++++++..+... . . .+.+++++ ++|+|+.|+|+...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~------~-~~~~~~~~--~~DvvFlalp~~~s 63 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------D------A-AARRELLN--AADVAILCLPDDAA 63 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------c------c-cCchhhhc--CCCEEEECCCHHHH
Confidence 689999996 8889999999999999999999865322 1 1 22334444 49999999999999
Q ss_pred HHHHHHHHHcCCeEE
Q 018020 87 VKWAISVAQKKKHLL 101 (362)
Q Consensus 87 ~~~~~~al~~gk~V~ 101 (362)
.+++.++.++|..|+
T Consensus 64 ~~~~~~~~~~g~~VI 78 (313)
T PRK11863 64 REAVALIDNPATRVI 78 (313)
T ss_pred HHHHHHHHhCCCEEE
Confidence 999999999988665
No 126
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.76 E-value=0.00016 Score=65.77 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=77.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h 86 (362)
..++.|||+|.+|+..+..+... ++.-+.|++|+.+++++++++++....+....+.+++-.. .+.|+|+.+||....
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASL-GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 35899999999999988888877 5555668999999999999887531111223333333111 359999999997643
Q ss_pred HHHHHHH-----HH----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHH
Q 018020 87 VKWAISV-----AQ----KKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQ 141 (362)
Q Consensus 87 ~~~~~~a-----l~----~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~ 141 (362)
....... +. ....++.| +..++.+ ..+++.|++.|.+..-|...........
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~ 264 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLD--AAYDPWP-TPLVAIVSAAGWRVISGLQMLLHQGFAQ 264 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEE--EeeCCCC-CHHHHHHHHCCCEEECcHHHHHHHHHHH
Confidence 2211100 00 12233333 2222222 4566677777777776655444333333
No 127
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.75 E-value=9.8e-05 Score=68.85 Aligned_cols=104 Identities=8% Similarity=0.004 Sum_probs=77.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.-+++|||+|..|..|+..+.....++=+-|++|+++++++|+++..-. -.+...+|.++.+.. .|+|+-+|+....
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~--ADIIvtaT~S~~~ 206 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEG--ADIITTVTADKTN 206 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEecCCCCC
Confidence 4678999999999999988876666777889999999999998876411 124557999999986 9999999986543
Q ss_pred HHHHH-HHHHcCCeEEEeCCCCCCHHHHHHH
Q 018020 87 VKWAI-SVAQKKKHLLMEKPMALNVAEFDVI 116 (362)
Q Consensus 87 ~~~~~-~al~~gk~V~~EKP~~~~~~~~~~l 116 (362)
.+++. +.++.|.||.+ ++.+....+|+
T Consensus 207 ~Pvl~~~~lkpG~hV~a---IGs~~p~~~El 234 (346)
T PRK07589 207 ATILTDDMVEPGMHINA---VGGDCPGKTEL 234 (346)
T ss_pred CceecHHHcCCCcEEEe---cCCCCCCcccC
Confidence 34343 57799999986 44444444444
No 128
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=97.75 E-value=0.00013 Score=59.52 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=71.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC--HHHHHHHHHHcCCCCC-------------------Cc--ccCCH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRS--LEKATNFAKANNFPPD-------------------AK--VYGSY 65 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~--~~~~~~~~~~~~~~~~-------------------~~--~~~~~ 65 (362)
|||||-|+|.||+..++.+...++++|++|.|+. .+....+ -+|....+ +. -..++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~L-lkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYL-LKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHH-HHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhh-hhccccccceecccccccceeEeecccccchhhhhh
Confidence 6999999999999999999999999999999987 4444433 33432110 00 01122
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMAL 108 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~~ 108 (362)
+++ ..+.++|+|+=||+.....+-+..-+++| |.|++--|...
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~ 124 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKD 124 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SS
T ss_pred cccccccccccEEEeccccceecccccccccccccceeecccccc
Confidence 222 11236899999999999999999999999 89998777544
No 129
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.74 E-value=0.0004 Score=62.95 Aligned_cols=121 Identities=10% Similarity=0.127 Sum_probs=87.6
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++-||.+.|. |.+|..+.+.+..- ++++++-+.+..-. + +-+|+ ++|.|++|+-+..++|+++|++|...
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~~~-~---~v~G~----~~y~sv~dlp~~~~~Dlavi~vpa~~ 75 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGKGG-T---TVLGL----PVFDSVKEAVEETGANASVIFVPAPF 75 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCCCc-c---eecCe----eccCCHHHHhhccCCCEEEEecCHHH
Confidence 4678999995 88899999999766 55566666655101 1 22455 59999999987545899999999999
Q ss_pred cHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccCh
Q 018020 86 HVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM-DGTMWVHNP 137 (362)
Q Consensus 86 h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p 137 (362)
-.+.+.+|.++| |.+++--. .....+.++|.+.|+++|+.+. .++.--++|
T Consensus 76 v~~~l~e~~~~Gvk~avIis~-Gf~e~~~~~l~~~a~~~girilGPNc~Giin~ 128 (286)
T TIGR01019 76 AADAIFEAIDAGIELIVCITE-GIPVHDMLKVKRYMEESGTRLIGPNCPGIITP 128 (286)
T ss_pred HHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHcCCEEECCCCceEEcc
Confidence 999999999999 56555222 2234456899999999998875 333333444
No 130
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.73 E-value=0.00017 Score=64.88 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=63.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCC---cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPN---AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~---~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.|||+|||+|.||...+..+.+... -++ .++++++++. +. ....+.+++++ ++|+|++++|+.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i-~~~~~~~~~~-------~~----~~~~~~~~~~~--~~D~Vilavkp~ 68 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENI-YYHTPSKKNT-------PF----VYLQSNEELAK--TCDIIVLAVKPD 68 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceE-EEECCChhcC-------Ce----EEeCChHHHHH--hCCEEEEEeCHH
Confidence 6899999999999999998876532 234 4677776431 21 34567788876 489999999998
Q ss_pred ccHHHHHHHHH--cCCeEEEeCCCCCCHHHHHHHH
Q 018020 85 MHVKWAISVAQ--KKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 85 ~h~~~~~~al~--~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
.-.+++..... .++.|++.-. +.+.+..+++.
T Consensus 69 ~~~~vl~~i~~~l~~~~iIS~~a-Gi~~~~l~~~~ 102 (260)
T PTZ00431 69 LAGKVLLEIKPYLGSKLLISICG-GLNLKTLEEMV 102 (260)
T ss_pred HHHHHHHHHHhhccCCEEEEEeC-CccHHHHHHHc
Confidence 77777665442 2355555422 44555555443
No 131
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.72 E-value=0.00025 Score=66.13 Aligned_cols=95 Identities=15% Similarity=0.310 Sum_probs=67.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-C--------CCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-N--------FPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-~--------~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|||+|||+|.||..++..|.+. +.+|. +++++++..+.+.+.. + +++.+..+++.++.+.. +.|+|++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~-g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK-KISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD-NATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC-CCCEEEE
Confidence 4799999999999999988766 56665 8899988888776532 1 11233456778777642 5899999
Q ss_pred cCCCcccHHHHHHHHH-c---CCeE-EEeCCC
Q 018020 80 PLPTSMHVKWAISVAQ-K---KKHL-LMEKPM 106 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~-~---gk~V-~~EKP~ 106 (362)
++|+....+.+..... . ...| .+-|-+
T Consensus 78 avks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 78 AVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 9999988887776654 2 2333 455555
No 132
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.71 E-value=0.00039 Score=63.20 Aligned_cols=116 Identities=7% Similarity=0.075 Sum_probs=85.9
Q ss_pred CCccCCceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCC--HHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 1 MATESQAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRS--LEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
|++--.++-||.|.|. |.+|...++.+.+. +++.+.-+.+. .+ +-.|+ ++|.|++++-+..++|++
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~~~~------~v~G~----~~y~sv~dlp~~~~~DlA 69 (291)
T PRK05678 1 MSILINKDTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGKGGT------TVLGL----PVFNTVAEAVEATGANAS 69 (291)
T ss_pred CceEecCCCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCCCCC------eEeCe----eccCCHHHHhhccCCCEE
Confidence 3333346789999996 77888999988876 44455455554 22 12354 599999999874359999
Q ss_pred EEcCCCcccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 78 YLPLPTSMHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+|++|...-.+.+.+|.++| |.+++-.- ...+++.++|.+.|+++|+.++
T Consensus 70 vi~vp~~~v~~~l~e~~~~gvk~avI~s~-Gf~~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 70 VIYVPPPFAADAILEAIDAGIDLIVCITE-GIPVLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred EEEcCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999 55454221 2246667799999999998875
No 133
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.71 E-value=0.00022 Score=65.11 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=54.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
--+|||||+|.||..++..++.. +++|++ +++. .+....+...|. .+ .+++|+++. .|+|++++|...+.
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~-G~~ViV-~~r~-~~s~~~A~~~G~----~v-~sl~Eaak~--ADVV~llLPd~~t~ 85 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDS-GVEVVV-GVRP-GKSFEVAKADGF----EV-MSVSEAVRT--AQVVQMLLPDEQQA 85 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC-cCEEEE-EECc-chhhHHHHHcCC----EE-CCHHHHHhc--CCEEEEeCCChHHH
Confidence 45799999999999999999977 788774 5444 334444555664 23 489999986 89999999986655
Q ss_pred HHH
Q 018020 88 KWA 90 (362)
Q Consensus 88 ~~~ 90 (362)
.++
T Consensus 86 ~V~ 88 (335)
T PRK13403 86 HVY 88 (335)
T ss_pred HHH
Confidence 443
No 134
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.71 E-value=0.00032 Score=61.49 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=64.8
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|||+||| +|.||...+..|.+. +.+|+ ++++++++++.+++.+ ++... ....+..+.++. .|+|+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~-~~~~~~~ea~~~--aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-GNKII-IGSRDLEKAEEAAAKALEELGHGGSDIK-VTGADNAEAAKR--ADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-CCEEE-EEEcCHHHHHHHHHHHHhhccccCCCce-EEEeChHHHHhc--CCEEEEE
Confidence 5799997 899999999998766 56765 6799998888776643 21101 112455677764 8999999
Q ss_pred CCCcccHHHHHHHHH--cCCeEE-EeCCCCC
Q 018020 81 LPTSMHVKWAISVAQ--KKKHLL-MEKPMAL 108 (362)
Q Consensus 81 ~~~~~h~~~~~~al~--~gk~V~-~EKP~~~ 108 (362)
+|+....+++..... .++-|+ |-+|+..
T Consensus 76 vp~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 76 VPWDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred CCHHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 999988877765432 243332 4556543
No 135
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=97.71 E-value=0.00049 Score=66.99 Aligned_cols=119 Identities=23% Similarity=0.307 Sum_probs=78.4
Q ss_pred CCceeEEEEEec-cHHHH-HHHHHHhc------C-CCcEEEEEEcCCHH---H--------------------HHHHHHH
Q 018020 5 SQAAIRFGIIGA-ADIAR-KLSRAITL------A-PNAVLSAVASRSLE---K--------------------ATNFAKA 52 (362)
Q Consensus 5 ~~~~~~v~iiG~-G~~g~-~~~~~~~~------~-~~~~vv~v~d~~~~---~--------------------~~~~~~~ 52 (362)
.+.+.-+.|.|+ |-.++ ...|+|-+ + +++.|+|+.-.... - .+.|.+.
T Consensus 6 ~~~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~~r~~v~~~l~~~~~~~~~~~~~~~F~~~ 85 (495)
T PRK05722 6 TAEPCDLVIFGATGDLARRKLLPALYNLYKAGLLPEDFRIIGVARRDWSDEDFREVVREALKEFARTPFDEEVWERFLSR 85 (495)
T ss_pred CCCCeEEEEeCCchHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhccCccCHHHHHHHHhh
Confidence 445788899997 66666 35665522 2 36899987743211 0 1112221
Q ss_pred cCC----CCCCcccCCHHHHhcC-------CCCcEEEEcCCCcccHHHHHHHHHcC-------CeEEEeCCCCCCHHHHH
Q 018020 53 NNF----PPDAKVYGSYEALLDD-------KDIDAVYLPLPTSMHVKWAISVAQKK-------KHLLMEKPMALNVAEFD 114 (362)
Q Consensus 53 ~~~----~~~~~~~~~~~e~l~~-------~~~D~V~i~~~~~~h~~~~~~al~~g-------k~V~~EKP~~~~~~~~~ 114 (362)
... -.+...|..+.+.|++ ....++++++||..+..++....++| ..|++|||++.|++.|+
T Consensus 86 ~~Y~~~d~~~~e~y~~L~~~L~~~e~~~~~~~nrlFYLAvPPs~F~~I~~~L~~~gl~~~~g~~RIVIEKPFG~DL~SA~ 165 (495)
T PRK05722 86 LYYVSGDVTDPESYERLKELLEELDEERGTGGNRVFYLATPPSLFGTICENLAAAGLNEGGGWRRVVIEKPFGHDLASAR 165 (495)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEEEECCHHHHHHHHHHHHHhCCCcCCCCcEEEEECCCCCCHHHHH
Confidence 100 0112234445555643 23568999999999999999888887 68999999999999999
Q ss_pred HHHHHHHHc
Q 018020 115 VILNACEEN 123 (362)
Q Consensus 115 ~l~~~a~~~ 123 (362)
+|.+...+.
T Consensus 166 ~Ln~~l~~~ 174 (495)
T PRK05722 166 ELNDQVGEV 174 (495)
T ss_pred HHHHHHHhc
Confidence 999988763
No 136
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.70 E-value=0.00028 Score=66.62 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=71.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc--
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS-- 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~-- 84 (362)
+.-||.|||+|-||.-.+..|... ++.-+.|++|+.++++.++++++.. +..++++.+.|. +.|+|+.+|...
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~-g~~~i~IaNRT~erA~~La~~~~~~--~~~l~el~~~l~--~~DvVissTsa~~~ 251 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEK-GVKKITIANRTLERAEELAKKLGAE--AVALEELLEALA--EADVVISSTSAPHP 251 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHhCCe--eecHHHHHHhhh--hCCEEEEecCCCcc
Confidence 345799999999999999999887 5666779999999999999999842 334455555565 499999987654
Q ss_pred -ccHHHHHHHHHcCCe-EEEe
Q 018020 85 -MHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 85 -~h~~~~~~al~~gk~-V~~E 103 (362)
...+.+..+++.-++ ++++
T Consensus 252 ii~~~~ve~a~~~r~~~livD 272 (414)
T COG0373 252 IITREMVERALKIRKRLLIVD 272 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEE
Confidence 457788888887777 5544
No 137
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.68 E-value=0.00038 Score=59.28 Aligned_cols=82 Identities=21% Similarity=0.129 Sum_probs=64.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+++++|+|+|.+|..++..|.+. +.+++..-.+.+++.+..++..+.. ..-.+.++..+. .|+|++++|-..+.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a-g~eV~igs~r~~~~~~a~a~~l~~~---i~~~~~~dA~~~--aDVVvLAVP~~a~~ 74 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA-GHEVIIGSSRGPKALAAAAAALGPL---ITGGSNEDAAAL--ADVVVLAVPFEAIP 74 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC-CCeEEEecCCChhHHHHHHHhhccc---cccCChHHHHhc--CCEEEEeccHHHHH
Confidence 36899999999999999999877 6888855577777777777777642 234566666664 89999999998888
Q ss_pred HHHHHHHH
Q 018020 88 KWAISVAQ 95 (362)
Q Consensus 88 ~~~~~al~ 95 (362)
.++....+
T Consensus 75 ~v~~~l~~ 82 (211)
T COG2085 75 DVLAELRD 82 (211)
T ss_pred hHHHHHHH
Confidence 88776664
No 138
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.68 E-value=0.0014 Score=60.33 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=89.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC----HHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS----YEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~~e~l~~~~~D~V~i~~~~~ 84 (362)
=+|+|+|+|..|.--++.++.+ +++++ ++|+++++++ +++++|-. .++++ .-+.+.. .+|+++++.+ .
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~-ga~Vi-a~~~~~~K~e-~a~~lGAd---~~i~~~~~~~~~~~~~-~~d~ii~tv~-~ 239 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAM-GAEVI-AITRSEEKLE-LAKKLGAD---HVINSSDSDALEAVKE-IADAIIDTVG-P 239 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCeEE-EEeCChHHHH-HHHHhCCc---EEEEcCCchhhHHhHh-hCcEEEECCC-h
Confidence 4799999997777777777777 48888 4678877554 45666642 22222 2222222 2999999999 7
Q ss_pred ccHHHHHHHHHcC-CeEEEeCCC-----------------------CCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH
Q 018020 85 MHVKWAISVAQKK-KHLLMEKPM-----------------------ALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA 140 (362)
Q Consensus 85 ~h~~~~~~al~~g-k~V~~EKP~-----------------------~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 140 (362)
.-.+...++|+.| +.|++--|. ..+..+.+++++++.+.+++-.+....+....-.
T Consensus 240 ~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~ 319 (339)
T COG1064 240 ATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIKPEILETIPLDEINE 319 (339)
T ss_pred hhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCceeeEEeeECHHHHHH
Confidence 7788888888776 666654441 2356899999999999999888764555555444
Q ss_pred HHHHhh
Q 018020 141 QMKEFV 146 (362)
Q Consensus 141 ~~k~~i 146 (362)
.+.++.
T Consensus 320 A~~~m~ 325 (339)
T COG1064 320 AYERME 325 (339)
T ss_pred HHHHHH
Confidence 445453
No 139
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=97.67 E-value=0.00038 Score=63.60 Aligned_cols=122 Identities=8% Similarity=0.044 Sum_probs=87.7
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCH--HHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSL--EKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+.-||.+-|. |..|..|.+.+.+- +-+||+-+.+.. +... .+|+ .+|++.+|+.+..++|+++|++|+
T Consensus 28 ~~t~v~vqGitg~~g~~h~~~~~~y-gt~iv~GV~Pgkgg~~v~----~~Gv----pvy~sv~ea~~~~~~D~avI~VPa 98 (317)
T PTZ00187 28 KNTKVICQGITGKQGTFHTEQAIEY-GTKMVGGVNPKKAGTTHL----KHGL----PVFATVKEAKKATGADASVIYVPP 98 (317)
T ss_pred CCCeEEEecCCChHHHHHHHHHHHh-CCcEEEEECCCCCCceEe----cCCc----cccCCHHHHhcccCCCEEEEecCH
Confidence 5679999995 88899999999887 778899888764 2211 1355 499999999987789999999999
Q ss_pred cccHHHHHHHHHcCC-eEEEeCCCCCCHHHHHHHHHHHH-HcCCEEE-EeeecccChh
Q 018020 84 SMHVKWAISVAQKKK-HLLMEKPMALNVAEFDVILNACE-ENGVQLM-DGTMWVHNPR 138 (362)
Q Consensus 84 ~~h~~~~~~al~~gk-~V~~EKP~~~~~~~~~~l~~~a~-~~~~~~~-v~~~~r~~p~ 138 (362)
..-.+.+.+|+++|. .+.|=. -.....+..++.+.++ ++|+.+. .|+.--++|.
T Consensus 99 ~~v~dai~Ea~~aGI~~~Viit-eGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~ 155 (317)
T PTZ00187 99 PHAASAIIEAIEAEIPLVVCIT-EGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPG 155 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEEC-CCCchhhHHHHHHHHhhcCCCEEECCCCceEEcch
Confidence 999999999999994 444421 1223444556666654 4676543 3344445664
No 140
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.67 E-value=0.00046 Score=63.13 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=54.5
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH----------cC-CC--------CCCcccCCHHHHhc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA----------NN-FP--------PDAKVYGSYEALLD 70 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~----------~~-~~--------~~~~~~~~~~e~l~ 70 (362)
||+|||+|.||...+..+.+. +.+|+ ++|+++++.+.+.+. .+ +. ......+++++.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 699999999999998888766 67755 789999887765432 01 10 01235678888887
Q ss_pred CCCCcEEEEcCCCcccH
Q 018020 71 DKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 71 ~~~~D~V~i~~~~~~h~ 87 (362)
+ +|+|+.|+|.....
T Consensus 81 ~--aD~Vi~avpe~~~~ 95 (288)
T PRK09260 81 D--ADLVIEAVPEKLEL 95 (288)
T ss_pred C--CCEEEEeccCCHHH
Confidence 5 89999999998653
No 141
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=0.00071 Score=62.90 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=61.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---------------CC-CcccCCHHHHhcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---------------PD-AKVYGSYEALLDDK 72 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~e~l~~~ 72 (362)
|||.|||+|+.|....-.|.++ +.+|+ .+|.++++.+.+.+. ..| .+ ....+|+++.+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~-GHeVv-~vDid~~KV~~ln~g-~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL-GHEVV-CVDIDESKVELLNKG-ISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc-CCeEE-EEeCCHHHHHHHhCC-CCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc-
Confidence 6899999999999998888887 57767 678998887765332 111 11 4567788888876
Q ss_pred CCcEEEEcCCCccc------HHHHHHHHH------cCCeEEEeCC
Q 018020 73 DIDAVYLPLPTSMH------VKWAISVAQ------KKKHLLMEKP 105 (362)
Q Consensus 73 ~~D~V~i~~~~~~h------~~~~~~al~------~gk~V~~EKP 105 (362)
.|+++|++|++.. ..++..+++ .++||++-|-
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 6666666554432 233333322 2469999993
No 142
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.65 E-value=0.00013 Score=66.47 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=76.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CC--CcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PD--AKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~--~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-+|.|||+|..|+..+..+... ++.-+.|+||+.++++.++++++-. +. +..++++.+.+. +.|+|+.+||...
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~--~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA--AADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC--CCCEEEECCcCCC
Confidence 4799999999999999988877 5544669999999999998876311 11 112344444554 4999999998754
Q ss_pred cH----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 86 HV----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 86 h~----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
+. ++-...++.+. ++++ +..++.+ -.+++.|+++|.++.-|.....
T Consensus 205 ~~~~~~~~~~~~l~~~~-~v~D--ivY~P~~-T~ll~~A~~~G~~~~~G~~ML~ 254 (284)
T PRK12549 205 AKHPGLPLPAELLRPGL-WVAD--IVYFPLE-TELLRAARALGCRTLDGGGMAV 254 (284)
T ss_pred CCCCCCCCCHHHcCCCc-EEEE--eeeCCCC-CHHHHHHHHCCCeEecCHHHHH
Confidence 32 12223344443 3333 2222222 4677788888888877754444
No 143
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00025 Score=65.32 Aligned_cols=110 Identities=18% Similarity=0.106 Sum_probs=84.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--CCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--PPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
-.++|||+|..+..|+.++...-+++=+-|++|+++.+++++..+.- +..+...+|.++.++. .|+|+-+||...
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG--ADIVVTATPSTE- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc--CCEEEEecCCCC-
Confidence 45899999999999999998887777788999999999988855321 0124678999999986 999999999877
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
+-+-..-++.|.||-. ++.+.....|+-...-+..
T Consensus 208 Pil~~~~l~~G~hI~a---iGad~p~k~Eld~e~l~ra 242 (330)
T COG2423 208 PVLKAEWLKPGTHINA---IGADAPGKRELDPEVLARA 242 (330)
T ss_pred CeecHhhcCCCcEEEe---cCCCCcccccCCHHHHHhc
Confidence 4344456788999875 6666666777766554433
No 144
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.64 E-value=0.00055 Score=62.50 Aligned_cols=98 Identities=15% Similarity=0.234 Sum_probs=75.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------C--CCCCCcccCCHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------N--FPPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~--~~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
++||+|||+|.+|...+..+.+.. .+ |-++.++++..+++.... | +|++..+++|+++++++ .|+|+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng-~~-V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~--ad~iv 76 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG-HE-VRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG--ADIIV 76 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC-Ce-eEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc--CCEEE
Confidence 368999999999999999987763 44 447889888888776642 1 34566778999999996 99999
Q ss_pred EcCCCcccHHHHHHH---HHcC-CeEEEeCCCCCC
Q 018020 79 LPLPTSMHVKWAISV---AQKK-KHLLMEKPMALN 109 (362)
Q Consensus 79 i~~~~~~h~~~~~~a---l~~g-k~V~~EKP~~~~ 109 (362)
+++|.....+++... ++.+ +-|.|-|-+-.+
T Consensus 77 ~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 77 IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred EECChHHHHHHHHHHhhhccCCCeEEEEeccccCC
Confidence 999999998888874 3445 346688876553
No 145
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.63 E-value=7.1e-05 Score=69.20 Aligned_cols=106 Identities=21% Similarity=0.124 Sum_probs=67.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC-CCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF-PPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.-+++|||+|..|..|+..+...-.++-+-|++|+++++++|++++.- ...+...+|.++.+.. .|+|+-+||....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~--aDii~taT~s~~~ 205 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRG--ADIIVTATPSTTP 205 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTT--SSEEEE----SSE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhccc--CCEEEEccCCCCC
Confidence 458999999999999999987654477788999999999998887642 1124568999999986 8999999998774
Q ss_pred HHHHH-HHHHcCCeEEEeCCCCCCHHHHHHHHH
Q 018020 87 VKWAI-SVAQKKKHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 87 ~~~~~-~al~~gk~V~~EKP~~~~~~~~~~l~~ 118 (362)
.+++. .-++.|.||.. ++.+..+.+||-.
T Consensus 206 ~P~~~~~~l~~g~hi~~---iGs~~~~~~El~~ 235 (313)
T PF02423_consen 206 APVFDAEWLKPGTHINA---IGSYTPGMRELDD 235 (313)
T ss_dssp EESB-GGGS-TT-EEEE----S-SSTTBESB-H
T ss_pred CccccHHHcCCCcEEEE---ecCCCCchhhcCH
Confidence 23333 56788999986 5554444444443
No 146
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.63 E-value=0.00019 Score=67.95 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=71.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCC----CCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFP----PDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
.-+++|||+|..|..|+..+... |.++-+-|++|+++++++|++++.-. ..+...+|.++.+.+ .|+|+-+|+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~--ADIVvtaT~ 232 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG--SDIVTYCNS 232 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC--CCEEEEccC
Confidence 45789999999999999988764 56888889999999999988776311 024567999999986 999999997
Q ss_pred Cccc----HHHH-HHHHHcCCeEEE
Q 018020 83 TSMH----VKWA-ISVAQKKKHLLM 102 (362)
Q Consensus 83 ~~~h----~~~~-~~al~~gk~V~~ 102 (362)
...- .+++ ..-++.|.||.+
T Consensus 233 s~~~~~s~~Pv~~~~~lkpG~hv~~ 257 (379)
T PRK06199 233 GETGDPSTYPYVKREWVKPGAFLLM 257 (379)
T ss_pred CCCCCCCcCcEecHHHcCCCcEEec
Confidence 5321 1333 346789999985
No 147
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.61 E-value=0.00019 Score=67.44 Aligned_cols=92 Identities=22% Similarity=0.394 Sum_probs=62.8
Q ss_pred eeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC------C---CCCcc-cCCHHHHhcCCCCcE
Q 018020 8 AIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF------P---PDAKV-YGSYEALLDDKDIDA 76 (362)
Q Consensus 8 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~------~---~~~~~-~~~~~e~l~~~~~D~ 76 (362)
++||+|+| +|.+|...++.+.++|.++|+++........+.+...+.. + .+..+ -.+.+++ . ++|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~Dv 79 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D--DVDI 79 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c--CCCE
Confidence 69999998 7999999999999999999998832222222222211111 0 00011 1233433 3 6999
Q ss_pred EEEcCCCcccHHHHHHHHHcCCeEEE
Q 018020 77 VYLPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
|+.++|+..+.+++..+.++|+.|+.
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~vID 105 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPVFS 105 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEEEE
Confidence 99999999999999988899987764
No 148
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.61 E-value=0.001 Score=64.79 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=49.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCC---------------CCCcccCCHHHHhcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFP---------------PDAKVYGSYEALLDD 71 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~---------------~~~~~~~~~~e~l~~ 71 (362)
+|||+|||+|++|...+-.|.+.. +++|++ +|.++++.+.+.+.. .+ ......+++++.+.+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~g-vD~~~~~v~~l~~g~-~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVV-VDISVPRIDAWNSDQ-LPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEE-EECCHHHHHHHHcCC-CccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc
Confidence 378999999999999988887663 688774 589998888754321 10 012345666666665
Q ss_pred CCCcEEEEcCCC
Q 018020 72 KDIDAVYLPLPT 83 (362)
Q Consensus 72 ~~~D~V~i~~~~ 83 (362)
.|+++||+|+
T Consensus 79 --advi~I~V~T 88 (473)
T PLN02353 79 --ADIVFVSVNT 88 (473)
T ss_pred --CCEEEEEeCC
Confidence 7777776543
No 149
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.61 E-value=0.00024 Score=64.34 Aligned_cols=126 Identities=19% Similarity=0.183 Sum_probs=81.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-+++|+|+|.+|+..+..+... +.++. +++|++++++.++++++-... ....++++.. ..++|+|+.+||...+..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~-v~~R~~~~~~~la~~~~~~~~-~~~~~~~~~~-~~~~DivInatp~gm~~~ 193 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVI-IANRTVSKAEELAERFQRYGE-IQAFSMDELP-LHRVDLIINATSAGMSGN 193 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHHHhhcCc-eEEechhhhc-ccCccEEEECCCCCCCCC
Confidence 4799999999999999988876 46644 889999999888887642111 1223444432 236999999999864432
Q ss_pred -----HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHH
Q 018020 89 -----WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQM 142 (362)
Q Consensus 89 -----~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~ 142 (362)
+....++.++ ++++ +..+..+. .+++.|++.|+.+..|...-........
T Consensus 194 ~~~~~~~~~~l~~~~-~v~D--~~y~p~~T-~ll~~A~~~G~~~vdG~~Ml~~Qa~~~f 248 (270)
T TIGR00507 194 IDEPPVPAEKLKEGM-VVYD--MVYNPGET-PFLAEAKSLGTKTIDGLGMLVAQAALAF 248 (270)
T ss_pred CCCCCCCHHHcCCCC-EEEE--eccCCCCC-HHHHHHHHCCCeeeCCHHHHHHHHHHHH
Confidence 2234555564 4444 23332222 5899999999998887655443333333
No 150
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.60 E-value=0.00062 Score=62.90 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=69.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcCCC---------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANNFP---------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~~~---------~~~~~~~~~~e~l 69 (362)
++|+|||+|.||...+..+.+. +.+|+ ++|++++..+...+ +.|.. .......|+++.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-GHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-CCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 4799999999999999998877 67755 88999876665321 22321 0124667888888
Q ss_pred cCCCCcEEEEcCCCccc--HHHHHHHHHc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 70 DDKDIDAVYLPLPTSMH--VKWAISVAQK-KKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h--~~~~~~al~~-gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++ +|+|+.++|.... ..+....-+. ..++++- -+.+.....++.+.++..+..+.
T Consensus 81 ~~--ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~--ssts~~~~~~la~~~~~~~~~~~ 138 (308)
T PRK06129 81 AD--ADYVQESAPENLELKRALFAELDALAPPHAILA--SSTSALLASAFTEHLAGRERCLV 138 (308)
T ss_pred CC--CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE--EeCCCCCHHHHHHhcCCcccEEE
Confidence 75 9999999998743 2222222111 1233332 23333445566666655444333
No 151
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.59 E-value=0.00053 Score=67.60 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=55.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cC-CC------C-CCcccCCHHHHhcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NN-FP------P-DAKVYGSYEALLDDKD 73 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~-~~------~-~~~~~~~~~e~l~~~~ 73 (362)
+||+|||+|.||...+..+.+. +++|+ ++|+++++.+.+.+. .+ +. . .....+|+++.+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~-- 80 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-GIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG-- 80 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC--
Confidence 5899999999999999988776 67765 899999887665321 00 00 0 13467889888875
Q ss_pred CcEEEEcCCCccc
Q 018020 74 IDAVYLPLPTSMH 86 (362)
Q Consensus 74 ~D~V~i~~~~~~h 86 (362)
+|+|+.++|+...
T Consensus 81 aD~Vieavpe~~~ 93 (495)
T PRK07531 81 ADWIQESVPERLD 93 (495)
T ss_pred CCEEEEcCcCCHH
Confidence 9999999999864
No 152
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=97.57 E-value=0.00061 Score=62.05 Aligned_cols=122 Identities=7% Similarity=0.056 Sum_probs=85.5
Q ss_pred ceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+.-||.+.| +|..|..|.+.++.- +-+|++-+.+..-. + +-+|+ .+|.|+.|+.+..++|+++|++|...
T Consensus 11 ~~~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~-~---~i~G~----~~y~sv~dlp~~~~~DlAvI~vPa~~ 81 (300)
T PLN00125 11 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGL----PVFNTVAEAKAETKANASVIYVPPPF 81 (300)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCC-c---eEcCe----eccCCHHHHhhccCCCEEEEecCHHH
Confidence 456899999 588899999998877 67788888876310 1 12355 59999999997656899999999999
Q ss_pred cHHHHHHHHHcCCe-EEEeCCCCCCHHHH-HHHHHHHHHcCCEEE-EeeecccChh
Q 018020 86 HVKWAISVAQKKKH-LLMEKPMALNVAEF-DVILNACEENGVQLM-DGTMWVHNPR 138 (362)
Q Consensus 86 h~~~~~~al~~gk~-V~~EKP~~~~~~~~-~~l~~~a~~~~~~~~-v~~~~r~~p~ 138 (362)
-...+++|+++|.+ +++=-- .....+. +++.+.++++|+.++ .++.--++|.
T Consensus 82 v~~al~e~~~~Gvk~~vIisa-Gf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~ 136 (300)
T PLN00125 82 AAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG 136 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCcccHHHHHHHHHhhcCCEEECCCCceeeccc
Confidence 99999999999944 544211 1222223 444455888988654 3333334443
No 153
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00047 Score=63.51 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=112.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc-cCCHHHHhc--CCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV-YGSYEALLD--DKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~e~l~--~~~~D~V~i~~~~~ 84 (362)
+-+|.++|+|+.+...+..+.+..+++|+ |+.+....++++++..++.+ +.+ ..+-+.-|. -.+.|+|+--+|..
T Consensus 2 ~~~vlllgsg~v~~p~~d~ls~~~dv~vt-va~~~~~~~~~~~~~~~~~a-v~ldv~~~~~~L~~~v~~~D~viSLlP~t 79 (445)
T KOG0172|consen 2 KKGVLLLGSGFVSRPVADFLSRKKDVNVT-VASRTLKDAEALVKGINIKA-VSLDVADEELALRKEVKPLDLVISLLPYT 79 (445)
T ss_pred CcceEEecCccccchHHHHHhhcCCceEE-EehhhHHHHHHHhcCCCccc-eEEEccchHHHHHhhhcccceeeeeccch
Confidence 45799999999999999999888889877 66677888999988776531 111 122221222 14699999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhh--c-CCCCccceEEEEEE
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFV--S-DPQRFGQLRTMHSC 161 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i--~-~~g~iG~i~~i~~~ 161 (362)
.|.-+++.|+..++|+.. -+..-.+.++|-+.+..+|...+- ..- +.|.+..+-++= . .-..+|+|..+..+
T Consensus 80 ~h~lVaK~~i~~~~~~vt---sSyv~pe~~~L~~~~v~AG~ti~~-e~g-ldpGidhm~a~~ti~~vh~hgg~i~sf~sy 154 (445)
T KOG0172|consen 80 FHPLVAKGCIITKEDSVT---SSYVDPELEELEKAAVPAGSTIMN-EIG-LDPGIDHMPAMKTIDLVHEHGGKIKSFKSY 154 (445)
T ss_pred hhHHHHHHHHHhhccccc---ccccCHHHHhhhhhccCCCceEec-ccc-cCcchhhhhhhccchHHHhhcceeeehhhh
Confidence 999999999999999765 355678899999999999988763 222 777776555431 0 01345788887777
Q ss_pred eeecCCcc
Q 018020 162 FSFAGDAE 169 (362)
Q Consensus 162 ~~~~~~~~ 169 (362)
+++.+.++
T Consensus 155 cGglpape 162 (445)
T KOG0172|consen 155 CGGLPAPE 162 (445)
T ss_pred cCCccChh
Confidence 76654444
No 154
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.55 E-value=0.0015 Score=60.36 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=54.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH----cCC--C--------CCCcccCCHHHHhcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA----NNF--P--------PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~----~~~--~--------~~~~~~~~~~e~l~~~~ 73 (362)
..||+|||+|.||...+..+.+. +.+|+ ++|+++++.+++.+. .+. + ......+|+++.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 79 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK-GLQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG-- 79 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC-CCeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc--
Confidence 35799999999999999988765 67766 689998887766542 221 0 001345678887765
Q ss_pred CcEEEEcCCCccc
Q 018020 74 IDAVYLPLPTSMH 86 (362)
Q Consensus 74 ~D~V~i~~~~~~h 86 (362)
+|+|++++|+..+
T Consensus 80 aDlVi~av~~~~~ 92 (311)
T PRK06130 80 ADLVIEAVPEKLE 92 (311)
T ss_pred CCEEEEeccCcHH
Confidence 8999999999863
No 155
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.54 E-value=0.0009 Score=62.06 Aligned_cols=124 Identities=15% Similarity=0.253 Sum_probs=80.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CC--------------CCCcccCCHHHHhcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FP--------------PDAKVYGSYEALLDDK 72 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~e~l~~~ 72 (362)
.++|++||+|++|-..+-.+.+. +++++| +|.++.+.+.+.+--. +. -..+..+|++++-
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~-G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~--- 83 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASA-GFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELK--- 83 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHc-CCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcc---
Confidence 48999999999999888887766 788885 6888877665532110 00 0124455555553
Q ss_pred CCcEEEEcCCCccc-------------HHHHHHHHHcCCeEEEeC--CCCCCHHHHHHHHHHHHHcCCEEEEeeecccCh
Q 018020 73 DIDAVYLPLPTSMH-------------VKWAISVAQKKKHLLMEK--PMALNVAEFDVILNACEENGVQLMDGTMWVHNP 137 (362)
Q Consensus 73 ~~D~V~i~~~~~~h-------------~~~~~~al~~gk~V~~EK--P~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p 137 (362)
++|+.+||.|++.- .+-+...|+.|-=|++|. |.+++.+-++-+++. +.|+++-..+..-|+|
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~--~sgL~~~~Df~laysP 161 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE--RSGLKFGEDFYLAYSP 161 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh--cCCCcccceeeEeeCc
Confidence 58999988887642 344556778898899997 666666665555443 2555554455555555
Q ss_pred h
Q 018020 138 R 138 (362)
Q Consensus 138 ~ 138 (362)
.
T Consensus 162 E 162 (436)
T COG0677 162 E 162 (436)
T ss_pred c
Confidence 4
No 156
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.53 E-value=0.00019 Score=66.79 Aligned_cols=88 Identities=9% Similarity=0.171 Sum_probs=62.0
Q ss_pred ceeEEEEEec-cHHHHHHHHHHh--cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHH-hcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAIT--LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL-LDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~--~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~-l~~~~~D~V~i~~~ 82 (362)
+++||+|+|+ |..|...++.|. .+|.++++.+.+... .-+.+. ..+.. ..+.+.++. ++ ++|+|+.++|
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~-aG~~l~-~~~~~---l~~~~~~~~~~~--~vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSES-AGHSVP-FAGKN---LRVREVDSFDFS--QVQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECccc-CCCeec-cCCcc---eEEeeCChHHhc--CCCEEEEcCC
Confidence 4699999997 889999999998 689999998887632 111111 11111 122222221 33 6999999999
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
+....+++.+++++|+.|+
T Consensus 76 ~~~s~~~v~~~~~~G~~VI 94 (336)
T PRK05671 76 AAVSRSFAEKARAAGCSVI 94 (336)
T ss_pred HHHHHHHHHHHHHCCCeEE
Confidence 9999999999999997655
No 157
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.53 E-value=0.0018 Score=59.14 Aligned_cols=74 Identities=11% Similarity=0.079 Sum_probs=52.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-----------cCCC---------CCCcccCCHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-----------NNFP---------PDAKVYGSYEA 67 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-----------~~~~---------~~~~~~~~~~e 67 (362)
..||+|||+|.||...+..+... +.+|+ ++|+++++.++..+. ..+. ......+|+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH-GFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 35899999999999998888765 56644 789988766554322 1111 12235788888
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 018020 68 LLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 68 ~l~~~~~D~V~i~~~~~~ 85 (362)
.+++ .|+|+.++|...
T Consensus 81 a~~~--aDlVieavpe~~ 96 (287)
T PRK08293 81 AVKD--ADLVIEAVPEDP 96 (287)
T ss_pred HhcC--CCEEEEeccCCH
Confidence 8875 899999999763
No 158
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.52 E-value=0.0004 Score=62.69 Aligned_cols=114 Identities=11% Similarity=0.172 Sum_probs=75.6
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH--
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV-- 87 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~-- 87 (362)
++.|+|+|..++..+..+.+. ++.-+.|++|+.++++.+++.++.. + .+-+...+.|+||.+||...+.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~~~a~~la~~~~~~-----~---~~~~~~~~~dlvINaTp~Gm~~~~ 194 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA-GFTDGTIVARNEKTGKALAELYGYE-----W---RPDLGGIEADILVNVTPIGMAGGP 194 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHhCCc-----c---hhhcccccCCEEEECCccccCCCC
Confidence 899999999999998888877 5544669999999999999887532 1 1112234589999999976542
Q ss_pred -----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 018020 88 -----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHN 136 (362)
Q Consensus 88 -----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~ 136 (362)
++-...+..+ .+++| +..++. --.+++.|++.|.++.-|.....+
T Consensus 195 ~~~~~pi~~~~l~~~-~~v~D--~vY~P~-~T~ll~~A~~~G~~~i~Gl~MLi~ 244 (272)
T PRK12550 195 EADKLAFPEAEIDAA-SVVFD--VVALPA-ETPLIRYARARGKTVITGAEVIAL 244 (272)
T ss_pred ccccCCCCHHHcCCC-CEEEE--eecCCc-cCHHHHHHHHCcCeEeCCHHHHHH
Confidence 1222334333 34444 222222 246778888888888777554443
No 159
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.00087 Score=60.89 Aligned_cols=101 Identities=20% Similarity=0.137 Sum_probs=77.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEc-CCHHHHHHHHHHc---CC-C--------------CCCcccCCHH-
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP-NAVLSAVAS-RSLEKATNFAKAN---NF-P--------------PDAKVYGSYE- 66 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d-~~~~~~~~~~~~~---~~-~--------------~~~~~~~~~~- 66 (362)
++||||=|+|.||+..++++...+ ++++|||-| .+++....+.+.- |. + .+++++.+.+
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p 80 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDP 80 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCCh
Confidence 489999999999999999998888 699999999 6777666655442 11 1 1234444555
Q ss_pred HHhc--CCCCcEEEEcCCCcccHHHHHHHHHcC--CeEEEeCCCCC
Q 018020 67 ALLD--DKDIDAVYLPLPTSMHVKWAISVAQKK--KHLLMEKPMAL 108 (362)
Q Consensus 67 e~l~--~~~~D~V~i~~~~~~h~~~~~~al~~g--k~V~~EKP~~~ 108 (362)
+.|. +..+|+|+=|||-....+-+..-+++| |.|++--|...
T Consensus 81 ~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~ 126 (335)
T COG0057 81 ANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD 126 (335)
T ss_pred HHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC
Confidence 5654 346899999999999999999999996 99998877554
No 160
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.51 E-value=0.00023 Score=66.11 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=65.2
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+++||+|||+ |..|..+++.|.+ +|.++|..+.+.+. .-+.+. ++. .+ ..+.+.++.. -.++|+|+.++|+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s-aG~~~~--~~~-~~-~~v~~~~~~~-~~~~Dvvf~a~p~ 76 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEES-AGETLR--FGG-KS-VTVQDAAEFD-WSQAQLAFFVAGR 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc-CCceEE--ECC-cc-eEEEeCchhh-ccCCCEEEECCCH
Confidence 5899999997 8889999999987 89999998876532 122221 111 11 2334555542 1369999999999
Q ss_pred cccHHHHHHHHHcCCeEE
Q 018020 84 SMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~ 101 (362)
....+++.+++++|..|+
T Consensus 77 ~~s~~~~~~~~~~g~~VI 94 (336)
T PRK08040 77 EASAAYAEEATNAGCLVI 94 (336)
T ss_pred HHHHHHHHHHHHCCCEEE
Confidence 999999999999998665
No 161
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.48 E-value=0.00067 Score=63.59 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=68.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc--------C--CCCCCcccCCHHHHhcCCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN--------N--FPPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~--------~--~~~~~~~~~~~~e~l~~~~~D 75 (362)
+.++||+|||+|.||..++..+.+.. .++ ++.++++..+.+.+.. + ++......+|+++.+++ .|
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g--~v~-l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~--aD 79 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG--PTL-QWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC--AD 79 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--CEE-EEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc--CC
Confidence 45689999999999999998887664 333 4568888887776532 1 11123456788887764 89
Q ss_pred EEEEcCCCcccHHHHHHHHH---cCCe-EEEeCCCCC
Q 018020 76 AVYLPLPTSMHVKWAISVAQ---KKKH-LLMEKPMAL 108 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~---~gk~-V~~EKP~~~ 108 (362)
+|++++|+..+.+++.+... .+.. |.+.|-+..
T Consensus 80 lVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 80 VVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 99999999887777666543 2333 458887654
No 162
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.48 E-value=0.00083 Score=65.28 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=79.0
Q ss_pred ceeEEEEEec----cHHHHHHHHHHhcCCCc--EEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 7 AAIRFGIIGA----ADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 7 ~~~~v~iiG~----G~~g~~~~~~~~~~~~~--~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
.+-+|+|||+ |.+|...+..+++. ++ +|. .+++... +-.|+ .+|.+++++-. .+|+++|+
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~-gf~g~v~-~Vnp~~~------~i~G~----~~~~sl~~lp~--~~Dlavi~ 71 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEG-GYKGKIY-PVNPKAG------EILGV----KAYPSVLEIPD--PVDLAVIV 71 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhC-CCCCcEE-EECCCCC------ccCCc----cccCCHHHCCC--CCCEEEEe
Confidence 4568999999 66888999999876 34 443 3444322 22354 59999999854 59999999
Q ss_pred CCCcccHHHHHHHHHcC-CeEEEe-CCCCC----CHHHHHHHHHHHHHcCCEEE
Q 018020 81 LPTSMHVKWAISVAQKK-KHLLME-KPMAL----NVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g-k~V~~E-KP~~~----~~~~~~~l~~~a~~~~~~~~ 128 (362)
+|+..-.+.+++|.++| +.+++- .-++. ..+.-++|.+.|+++|+.+.
T Consensus 72 vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 72 VPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 99999999999999999 666551 11111 12334789999999998865
No 163
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.48 E-value=0.0017 Score=60.04 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=55.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcCCC-----CCCcccCCHHHHhcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANNFP-----PDAKVYGSYEALLDDK 72 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~~~-----~~~~~~~~~~e~l~~~ 72 (362)
.-||+|||+|.||...+..+... +++|+ ++|++++..+...+ +.+.. ......+|+++.+++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G~~V~-l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~- 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-GLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD- 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC-
Confidence 35799999999999999888766 78866 89999876554322 11211 112456788888875
Q ss_pred CCcEEEEcCCCccc
Q 018020 73 DIDAVYLPLPTSMH 86 (362)
Q Consensus 73 ~~D~V~i~~~~~~h 86 (362)
+|+|+-+.|....
T Consensus 84 -aDlViEavpE~l~ 96 (321)
T PRK07066 84 -ADFIQESAPEREA 96 (321)
T ss_pred -CCEEEECCcCCHH
Confidence 9999999998764
No 164
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.47 E-value=0.00083 Score=65.75 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=75.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..+++|+|+|.+|...+..+.+. +++++ +++++.++++.++++++.. ..+++++-+..++|+|+++||.....
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~-G~~V~-i~~R~~~~~~~la~~~~~~-----~~~~~~~~~l~~~DiVInatP~g~~~ 404 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARA-GAELL-IFNRTKAHAEALASRCQGK-----AFPLESLPELHRIDIIINCLPPSVTI 404 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHHhccc-----eechhHhcccCCCCEEEEcCCCCCcc
Confidence 45899999999999999988876 56655 7899999999888876521 22344443234699999999987643
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
+ ..+. ++++| +..+..+. .+++.|++.|....-|...-.
T Consensus 405 ~---~~l~---~~v~D--~~Y~P~~T-~ll~~A~~~G~~~~~G~~Ml~ 443 (477)
T PRK09310 405 P---KAFP---PCVVD--INTLPKHS-PYTQYARSQGSSIIYGYEMFA 443 (477)
T ss_pred h---hHHh---hhEEe--ccCCCCCC-HHHHHHHHCcCEEECcHHHHH
Confidence 2 2222 25555 23333222 277888888888777654433
No 165
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00042 Score=62.67 Aligned_cols=71 Identities=21% Similarity=0.156 Sum_probs=57.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.+++|||||+|.||+.++..+.++ +..+. +|||+. -..+++.+|. ..|+.+.++.+. .+|+|+.||.-..-
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~a-Gh~li-~hsRsd--yssaa~~yg~----~~ft~lhdlcer-hpDvvLlctsilsi 121 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDA-GHGLI-CHSRSD--YSSAAEKYGS----AKFTLLHDLCER-HPDVVLLCTSILSI 121 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhc-CceeE-ecCcch--hHHHHHHhcc----cccccHHHHHhc-CCCEEEEEehhhhH
Confidence 479999999999999999999888 55544 788865 5666788874 579999997775 79999999875433
No 166
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.45 E-value=0.00034 Score=59.19 Aligned_cols=67 Identities=28% Similarity=0.296 Sum_probs=49.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|||||+|.+|+..++.++.. +++|+ ++|++..... .....+ ..+.+++|+++. .|+|+++.|-.
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~f-G~~V~-~~d~~~~~~~-~~~~~~-----~~~~~l~ell~~--aDiv~~~~plt 102 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAF-GMRVI-GYDRSPKPEE-GADEFG-----VEYVSLDELLAQ--ADIVSLHLPLT 102 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHT-T-EEE-EEESSCHHHH-HHHHTT-----EEESSHHHHHHH---SEEEE-SSSS
T ss_pred CCEEEEEEEcCCcCeEeeeeecC-CceeE-EecccCChhh-hccccc-----ceeeehhhhcch--hhhhhhhhccc
Confidence 46899999999999999999977 78877 6778765444 223333 247799999996 99999999854
No 167
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.39 E-value=0.0025 Score=58.47 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=52.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH----------cCC-C--------CCCcccCCHHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA----------NNF-P--------PDAKVYGSYEAL 68 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~----------~~~-~--------~~~~~~~~~~e~ 68 (362)
..||+|||+|.||...+..+... +.+|+ ++|+++++++...++ .+. + ......+++++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 80 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-GYDVL-LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED- 80 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-
Confidence 46899999999999998888766 67766 789998877654321 121 1 01234567754
Q ss_pred hcCCCCcEEEEcCCCccc
Q 018020 69 LDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 69 l~~~~~D~V~i~~~~~~h 86 (362)
++ +.|+|+.++|...+
T Consensus 81 ~~--~aD~Vieavpe~~~ 96 (292)
T PRK07530 81 LA--DCDLVIEAATEDET 96 (292)
T ss_pred hc--CCCEEEEcCcCCHH
Confidence 44 59999999998754
No 168
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=97.39 E-value=0.00071 Score=59.83 Aligned_cols=118 Identities=9% Similarity=0.128 Sum_probs=91.7
Q ss_pred CCccCCceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 1 MATESQAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|+.--.+.-||.+-|. |.+|..|...+.+- +.++|+-+.+..- .+. -.++ .+|++.+|.++..++|+.+|
T Consensus 1 m~il~~k~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkg-G~~---~~g~----PVf~tV~EA~~~~~a~~svI 71 (293)
T COG0074 1 MSILLNKDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKG-GQT---ILGL----PVFNTVEEAVKETGANASVI 71 (293)
T ss_pred CceeecCCCeEEEeccccccchHHHHHHHHh-CCceeecccCCCC-ceE---EcCc----cHHHHHHHHHHhhCCCEEEE
Confidence 4434456789999995 88899999988877 8888887776431 111 1234 48999999999889999999
Q ss_pred cCCCcccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 80 PLPTSMHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+.|+..-++.+.+|+++| +.|+|=. =...+.+..++.+.+++.++.++
T Consensus 72 ~Vp~~~aadai~EAida~i~liv~IT-EgIP~~D~~~~~~~a~~~g~~ii 120 (293)
T COG0074 72 FVPPPFAADAILEAIDAGIKLVVIIT-EGIPVLDMLELKRYAREKGTRLI 120 (293)
T ss_pred ecCcHHHHHHHHHHHhCCCcEEEEEe-CCCCHHHHHHHHHHHHhcCCEEE
Confidence 999999999999999999 4444411 14578999999999999996654
No 169
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.38 E-value=0.0024 Score=58.18 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=53.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH-----------HHHHcCCC--------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATN-----------FAKANNFP--------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~-----------~~~~~~~~--------~~~~~~~~~~e~l 69 (362)
.||+|||+|.||...+..+... +.+|+ ++|+++++++. +.++..+. ......+++++ +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-g~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 80 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-GYDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-L 80 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 4799999999999999988777 56766 68999887742 22221111 02234567765 4
Q ss_pred cCCCCcEEEEcCCCccc--HHHHHHH
Q 018020 70 DDKDIDAVYLPLPTSMH--VKWAISV 93 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h--~~~~~~a 93 (362)
+ ++|+|++++|.... .++..+.
T Consensus 81 ~--~aDlVi~av~e~~~~k~~~~~~l 104 (282)
T PRK05808 81 K--DADLVIEAATENMDLKKKIFAQL 104 (282)
T ss_pred c--cCCeeeecccccHHHHHHHHHHH
Confidence 4 48999999987654 3444443
No 170
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=97.38 E-value=0.0002 Score=69.35 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=46.1
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcC------CeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKK------KHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~g------k~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
-.++++++||..|..++..+.++| ++|++|||++.|+++|++|.+...+.
T Consensus 110 n~lfYLA~PP~~f~~i~~~L~~~gl~~~g~~RIVvEKPFG~DL~SA~~Ln~~l~~~ 165 (482)
T TIGR00871 110 NRLFYLATPPSVFGTIIKQLKKHGLNEQGWSRVVVEKPFGHDLASAQELNKQLRAV 165 (482)
T ss_pred ceEEEEECChHHHHHHHHHHHHhCCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 369999999999999999999988 69999999999999999999988764
No 171
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.38 E-value=0.0015 Score=60.06 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=55.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--C-----CcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--D-----AKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--~-----~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+|.+|..++..|.+. +.+|+ ++++++++.+.+.+. |+.. + ....++.+++ .++|+|++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g~~V~-~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~---~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-GHDVT-LVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAEL---GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEE-EEECChHHHHHHHHc-CCcccCCceeecccCCCChhHc---CCCCEEEEec
Confidence 4799999999999999988766 56655 667777777766543 4310 0 1224555554 4699999999
Q ss_pred CCcccHHHHHHHH
Q 018020 82 PTSMHVKWAISVA 94 (362)
Q Consensus 82 ~~~~h~~~~~~al 94 (362)
++....+++....
T Consensus 75 k~~~~~~~~~~l~ 87 (304)
T PRK06522 75 KAYQLPAALPSLA 87 (304)
T ss_pred ccccHHHHHHHHh
Confidence 9877666555443
No 172
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.37 E-value=0.00067 Score=62.20 Aligned_cols=115 Identities=16% Similarity=0.235 Sum_probs=75.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-|++|||+|.+|...+..++.. ++++. ++|+++++.+ .++.+|.. ...++++.+.+. +.|+|+.++|+..-.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~-v~~r~~~~~~-~~~~~G~~--~~~~~~l~~~l~--~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVT-VGARKSAHLA-RITEMGLS--PFHLSELAEEVG--KIDIIFNTIPALVLT 224 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEE-EEECCHHHHH-HHHHcCCe--eecHHHHHHHhC--CCCEEEECCChhhhh
Confidence 46999999999999999999887 57655 7899877644 34556642 122456667776 499999999875333
Q ss_pred HHHHHHHHcCCeEEEe---CCCCCCHHHHHHHHHHHHHcCCEEE--EeeecccCh
Q 018020 88 KWAISVAQKKKHLLME---KPMALNVAEFDVILNACEENGVQLM--DGTMWVHNP 137 (362)
Q Consensus 88 ~~~~~al~~gk~V~~E---KP~~~~~~~~~~l~~~a~~~~~~~~--v~~~~r~~p 137 (362)
+-....++.| .++++ .|...+. +.++++|++.. .+.+-++.|
T Consensus 225 ~~~l~~~~~g-~vIIDla~~pggtd~-------~~a~~~Gv~~~~~~~lpg~vap 271 (296)
T PRK08306 225 KEVLSKMPPE-ALIIDLASKPGGTDF-------EYAEKRGIKALLAPGLPGKVAP 271 (296)
T ss_pred HHHHHcCCCC-cEEEEEccCCCCcCe-------eehhhCCeEEEEECCCCccCCH
Confidence 3333445555 44544 2333332 36788888776 566666755
No 173
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.36 E-value=0.0038 Score=58.99 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=52.4
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH-HHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF-AKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
||+|||+|.||..++..+++. +.++. +++++++..+.. +...++.. ...+++++++++ +|+|++|+|+..-.+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~-G~~v~-i~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~--aDlVilavP~~~~~~ 75 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAA-GPDVF-IIGYDPSAAQLARALGFGVID--ELAADLQRAAAE--ADLIVLAVPVDATAA 75 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhc-CCCeE-EEEeCCCHHHHHHHhcCCCCc--ccccCHHHHhcC--CCEEEEeCCHHHHHH
Confidence 699999999999999999876 33333 444444332221 23344321 235677887764 999999999987666
Q ss_pred HHHHHH
Q 018020 89 WAISVA 94 (362)
Q Consensus 89 ~~~~al 94 (362)
++....
T Consensus 76 vl~~l~ 81 (359)
T PRK06545 76 LLAELA 81 (359)
T ss_pred HHHHHh
Confidence 665554
No 174
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.35 E-value=0.0024 Score=58.27 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=54.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH-----------HHHHcCCC--------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATN-----------FAKANNFP--------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~-----------~~~~~~~~--------~~~~~~~~~~e~l 69 (362)
-||+|||+|.||...+..+... +++|+ ++|++++..+. +.++..+. ......+|+++ +
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-F 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-h
Confidence 3899999999999999888766 78866 89999987665 22222211 01225677744 5
Q ss_pred cCCCCcEEEEcCCCcccHHHHH
Q 018020 70 DDKDIDAVYLPLPTSMHVKWAI 91 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~~~ 91 (362)
+ ++|+|+-+.|.........
T Consensus 83 ~--~~d~ViEav~E~~~~K~~l 102 (286)
T PRK07819 83 A--DRQLVIEAVVEDEAVKTEI 102 (286)
T ss_pred C--CCCEEEEecccCHHHHHHH
Confidence 4 4899999998887644443
No 175
>PRK07574 formate dehydrogenase; Provisional
Probab=97.35 E-value=0.0018 Score=61.26 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=53.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
-.+|||||+|.||+..++.++.. +++|. ++|++... ....+..++ ..+.+++|+++. .|+|++++|....-
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G~~V~-~~dr~~~~-~~~~~~~g~----~~~~~l~ell~~--aDvV~l~lPlt~~T 262 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-DVKLH-YTDRHRLP-EEVEQELGL----TYHVSFDSLVSV--CDVVTIHCPLHPET 262 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EECCCCCc-hhhHhhcCc----eecCCHHHHhhc--CCEEEEcCCCCHHH
Confidence 35899999999999999999876 78876 67886522 223344453 356899999986 89999999976543
No 176
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00092 Score=60.42 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=73.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-++.|+|+|..++..+..|.+..-.+|+ |++|+.++++++++.++-........+..++-...+.|++|.+||...+..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~-V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~ 205 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRIT-VVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGP 205 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEE-EEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCC
Confidence 5799999999999999999888434544 999999999999998863110011223333322115899999999876654
Q ss_pred H----HH-HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 89 W----AI-SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 89 ~----~~-~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
. +. ..+.. .++..| +...+. --.+++.|+++|.+..-|.
T Consensus 206 ~~~~~~~~~~l~~-~~~v~D--~vY~P~-~TplL~~A~~~G~~~idGl 249 (283)
T COG0169 206 EGDSPVPAELLPK-GAIVYD--VVYNPL-ETPLLREARAQGAKTIDGL 249 (283)
T ss_pred CCCCCCcHHhcCc-CCEEEE--eccCCC-CCHHHHHHHHcCCeEECcH
Confidence 2 12 22222 344433 122211 2346667777776655553
No 177
>PLN00203 glutamyl-tRNA reductase
Probab=97.35 E-value=0.0014 Score=64.56 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=60.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCcccCCHHHHhcCCCCcEEEEcCCCc--
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVYGSYEALLDDKDIDAVYLPLPTS-- 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~-- 84 (362)
..+|+|||+|.||...+..+... ++.-+.+++|+.++++.++++++ ..-.+..+++..+.+. +.|+|+.+|+..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~-G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~--~aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSK-GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAA--EADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHh--cCCEEEEccCCCCC
Confidence 56899999999999999988876 55445689999999999999874 2100123456666665 499999998643
Q ss_pred -ccHHHHHHHH
Q 018020 85 -MHVKWAISVA 94 (362)
Q Consensus 85 -~h~~~~~~al 94 (362)
...+++..+.
T Consensus 343 vI~~e~l~~~~ 353 (519)
T PLN00203 343 LFLKEHVEALP 353 (519)
T ss_pred eeCHHHHHHhh
Confidence 3455665554
No 178
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.35 E-value=0.0012 Score=61.52 Aligned_cols=96 Identities=6% Similarity=0.134 Sum_probs=65.5
Q ss_pred EEEEEeccHHHHHHHHHHhcCC-------CcEEEEEEcC-----CHHHHHHHHHHc-------C--CCCCCcccCCHHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAP-------NAVLSAVASR-----SLEKATNFAKAN-------N--FPPDAKVYGSYEAL 68 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~-------~~~vv~v~d~-----~~~~~~~~~~~~-------~--~~~~~~~~~~~~e~ 68 (362)
||+|||+|.+|...+..+.+.. +.+|. ++.+ +++-.+.+.+.. + +|++..+.+|++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~-lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVR-MWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEE-EEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 6899999999999988886532 14433 5666 445455444332 2 24455677899999
Q ss_pred hcCCCCcEEEEcCCCcccHHHHHHH---HHcCCe-EEEeCCCCC
Q 018020 69 LDDKDIDAVYLPLPTSMHVKWAISV---AQKKKH-LLMEKPMAL 108 (362)
Q Consensus 69 l~~~~~D~V~i~~~~~~h~~~~~~a---l~~gk~-V~~EKP~~~ 108 (362)
+++ .|+|++++|+..+.+++.+. ++.++. |.+-|-+..
T Consensus 80 l~~--ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 80 AKG--ADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred Hhc--CCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCccc
Confidence 986 89999999999998887765 344444 446666543
No 179
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.35 E-value=0.0024 Score=55.63 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=74.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH----------HHHHHHHHHcCCCCC-CcccCCHHHHhcCCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL----------EKATNFAKANNFPPD-AKVYGSYEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~----------~~~~~~~~~~~~~~~-~~~~~~~~e~l~~~~~D 75 (362)
+..||+|.|+|..|...+..|.+. +..+|+|+|.+. +..+...+..++..- ..-+.+-++++.. ++|
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~D 99 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGL-DVD 99 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceec-ccc
Confidence 468999999999999999999877 799999999988 766655555443210 0012244667765 899
Q ss_pred EEEEcCCCcc-cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 76 AVYLPLPTSM-HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 76 ~V~i~~~~~~-h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+++-|++... +.+. +.+.+..+++|+-=.....++.+++ ++.|+.+.
T Consensus 100 VlipaA~~~~i~~~~---a~~l~a~~V~e~AN~p~t~~a~~~L---~~~Gi~v~ 147 (217)
T cd05211 100 IFAPCALGNVIDLEN---AKKLKAKVVAEGANNPTTDEALRIL---HERGIVVA 147 (217)
T ss_pred EEeeccccCccChhh---HhhcCccEEEeCCCCCCCHHHHHHH---HHCCcEEE
Confidence 9999887663 3322 3334577889873222222554444 66676553
No 180
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.34 E-value=0.00066 Score=65.00 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=57.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..||.|||+|.||...+..+... ++.-+.|++|+.++++.++++++ .. +..++++.+.+.. .|+|+.||+.+
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~-g~~~I~V~nRt~~ra~~La~~~~~~~--~~~~~~l~~~l~~--aDiVI~aT~a~ 253 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTAL-APKQIMLANRTIEKAQKITSAFRNAS--AHYLSELPQLIKK--ADIIIAAVNVL 253 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHhcCCe--EecHHHHHHHhcc--CCEEEECcCCC
Confidence 45899999999999999999876 55456699999999999999986 32 2235666666775 99999999874
No 181
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.33 E-value=0.0015 Score=63.06 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=61.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc--
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM-- 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~-- 85 (362)
..+|+|||+|.||...+..+... ++.-+.++++++++++.+++++|.. +..+.++.+.+. +.|+|+.+|+...
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~-G~~~V~v~~r~~~ra~~la~~~g~~--~~~~~~~~~~l~--~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEK-GVRKITVANRTLERAEELAEEFGGE--AIPLDELPEALA--EADIVISSTGAPHPI 256 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCc--EeeHHHHHHHhc--cCCEEEECCCCCCcE
Confidence 46899999999999999888766 5644568999999999999998742 222355556665 5899999998653
Q ss_pred -cHHHHHHHHH
Q 018020 86 -HVKWAISVAQ 95 (362)
Q Consensus 86 -h~~~~~~al~ 95 (362)
..+.+..+++
T Consensus 257 i~~~~l~~~~~ 267 (423)
T PRK00045 257 IGKGMVERALK 267 (423)
T ss_pred EcHHHHHHHHh
Confidence 3555666553
No 182
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.33 E-value=0.003 Score=65.55 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=72.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.||+|||+|.||...+..+.+.. ..+ +.++|+++++.+.+ .++|.. ....+++++.++. .|+|++++|+..-.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~-V~~~d~~~~~~~~a-~~~g~~--~~~~~~~~~~~~~--aDvVilavp~~~~~ 77 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLARE-VVAVDRRAKSLELA-VSLGVI--DRGEEDLAEAVSG--ADVIVLAVPVLAME 77 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCE-EEEEECChhHHHHH-HHCCCC--CcccCCHHHHhcC--CCEEEECCCHHHHH
Confidence 57999999999999999998763 245 44689998876654 456642 1235678887774 89999999987555
Q ss_pred HHHHHHHH--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 88 KWAISVAQ--KKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 88 ~~~~~al~--~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
+++....+ ....++++-- +....-.+++.+......+.++.+++
T Consensus 78 ~vl~~l~~~~~~~~ii~d~~-svk~~~~~~l~~~~~~~~~r~~~~hP 123 (735)
T PRK14806 78 KVLADLKPLLSEHAIVTDVG-STKGNVVDAARAVFGELPAGFVPGHP 123 (735)
T ss_pred HHHHHHHHhcCCCcEEEEcC-CCchHHHHHHHHhccccCCeEEecCC
Confidence 44444332 2245666532 33333344444443333445544444
No 183
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.33 E-value=0.0017 Score=61.46 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=68.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHH---cCCCC-CCc---------------cc--CC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKA---NNFPP-DAK---------------VY--GS 64 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~---~~~~~-~~~---------------~~--~~ 64 (362)
++||||.|+|.||+..++.+...++++|++|-|+ +.+.+..+-+- +|.-+ .+. ++ .+
T Consensus 85 ~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 85 KTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred ceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCC
Confidence 4799999999999988888765568999999995 44443333221 12111 111 11 12
Q ss_pred HHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++++ ..+.++|+|+-||......+.+...+++| |.|++..|
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap 207 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP 207 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence 3332 22237999999999999999999999999 88999988
No 184
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.32 E-value=0.0017 Score=57.04 Aligned_cols=114 Identities=20% Similarity=0.201 Sum_probs=77.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHHHHHcCCCCCC--cccCCHHHHhcCCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNFAKANNFPPDA--KVYGSYEALLDDKDI 74 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~~~~~ 74 (362)
+.+||+|.|+|..|+..+..|.+. +++|++|+|. +.+...+..++.|.-.+. ..+-+.++++.. ++
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~-~~ 107 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL-DC 107 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee-cc
Confidence 468999999999999999988776 8999999998 888877777766521110 011245666665 79
Q ss_pred cEEEEcCCCcccHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 75 DAVYLPLPTSMHVKWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
|+++=|++...--+-....+ ...+++|- |+ + .++. +..+++|+.+...
T Consensus 108 Dvlip~a~~~~i~~~~~~~l--~a~~I~egAN~~~--t-~~a~---~~L~~rGi~~~PD 158 (227)
T cd01076 108 DILIPAALENQITADNADRI--KAKIIVEAANGPT--T-PEAD---EILHERGVLVVPD 158 (227)
T ss_pred cEEEecCccCccCHHHHhhc--eeeEEEeCCCCCC--C-HHHH---HHHHHCCCEEECh
Confidence 99998887765433333333 36778875 44 2 3333 3446778877544
No 185
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.32 E-value=0.0012 Score=55.33 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=70.2
Q ss_pred ceeEEEEEeccHHHHHHH-HHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHHHhcC---CCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLS-RAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEALLDD---KDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~-~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~~---~~~D~V~i~~ 81 (362)
.+.||+|||.|++|...+ +.|+.-...+..+.+..+++. .-+.+.++|++ ...+..+-+|.. +++|+|+-+|
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~---tt~egv~~ll~~p~~~di~lvfdat 79 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVA---TTHEGVIGLLNMPEFADIDLVFDAT 79 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCc---chhhHHHHHHhCCCCCCcceEEecc
Confidence 489999999999999764 455543446655555544432 23335667876 455667777764 5788999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCC
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMA 107 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~ 107 (362)
....|...+.+..++|...+-=.|.+
T Consensus 80 sa~~h~~~a~~~ae~gi~~idltpaa 105 (310)
T COG4569 80 SAGAHVKNAAALAEAGIRLIDLTPAA 105 (310)
T ss_pred ccchhhcchHhHHhcCCceeecchhc
Confidence 99999999999999998876545543
No 186
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.26 E-value=0.00082 Score=63.67 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=61.6
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CC-CCCcccCCHHHH-hcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FP-PDAKVYGSYEAL-LDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~-~~~~~~~~~~e~-l~~~~~D~V~i~~~ 82 (362)
.++||+|||+ |..|...++.|.++|.++|+.+... ....+.+...+- +. .....+.+.+.. + .++|+|+.++|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~-~saG~~i~~~~~~l~~~~~~~~~~~~~~~~--~~~DvVf~Alp 113 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD-RKAGQSFGSVFPHLITQDLPNLVAVKDADF--SDVDAVFCCLP 113 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh-hhcCCCchhhCccccCccccceecCCHHHh--cCCCEEEEcCC
Confidence 4679999997 8889999999999999999988763 333333333220 00 001112233322 3 36999999999
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
+....+++.. +++|+.|+
T Consensus 114 ~~~s~~i~~~-~~~g~~VI 131 (381)
T PLN02968 114 HGTTQEIIKA-LPKDLKIV 131 (381)
T ss_pred HHHHHHHHHH-HhCCCEEE
Confidence 9988888888 47886555
No 187
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.25 E-value=0.0012 Score=60.01 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=74.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--CCC-Cccc--CCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--PPD-AKVY--GSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--~~~-~~~~--~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-++.|+|+|..|+..+..+.+. ++.-+.|++|+.+++++++++++- +.. +... .++++.+. +.|+|+.+||.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~--~~divINaTp~ 204 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIA--AADGVVNATPM 204 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHh--hcCEEEEcCCC
Confidence 4799999999999988888776 555566999999999999887631 100 0111 12233443 48999999996
Q ss_pred cccH----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 84 SMHV----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 84 ~~h~----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
..+. .+-...+..+ +++.| +..++.+ -.+++.|++.|.+..-|...-.
T Consensus 205 Gm~~~~~~~~~~~~l~~~-~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~Gl~MLv 256 (283)
T PRK14027 205 GMPAHPGTAFDVSCLTKD-HWVGD--VVYMPIE-TELLKAARALGCETLDGTRMAI 256 (283)
T ss_pred CCCCCCCCCCCHHHcCCC-cEEEE--cccCCCC-CHHHHHHHHCCCEEEccHHHHH
Confidence 6532 1112233333 34444 2222211 4567778888887776654443
No 188
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.25 E-value=0.00094 Score=61.73 Aligned_cols=64 Identities=22% Similarity=0.147 Sum_probs=51.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||+|||+|.||...+..+.+. +.+|. ++++++. .++++++++ .|+|++++|...+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-G~~V~-~~~r~~~------------------~~~~~~~~~--advvi~~vp~~~~~ 61 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-GHRVR-VWSRRSG------------------LSLAAVLAD--ADVIVSAVSMKGVR 61 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCEEE-EEeCCCC------------------CCHHHHHhc--CCEEEEECChHHHH
Confidence 68999999999999999999866 56765 8887642 367788774 89999999997666
Q ss_pred HHHHHH
Q 018020 88 KWAISV 93 (362)
Q Consensus 88 ~~~~~a 93 (362)
.++...
T Consensus 62 ~v~~~l 67 (308)
T PRK14619 62 PVAEQV 67 (308)
T ss_pred HHHHHH
Confidence 666544
No 189
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.22 E-value=0.0065 Score=58.99 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccHHHHHHHH---
Q 018020 19 IARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHVKWAISVA--- 94 (362)
Q Consensus 19 ~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~~~~~~al--- 94 (362)
||..++..|.++ +++|+ |+||++++.+.+.++.+-..++..+.|++++.+. +.+|+|+++.|.....+-+..-+
T Consensus 1 MG~~mA~nL~~~-G~~V~-v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~ 78 (459)
T PRK09287 1 MGKNLALNIASH-GYTVA-VYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPL 78 (459)
T ss_pred CcHHHHHHHHhC-CCeEE-EECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhc
Confidence 577888888877 78865 8999999999998863311224678999999875 35899999999987766665433
Q ss_pred -HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 95 -QKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 95 -~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
+.| .++++-- +.+..+..++.+.++++|+.+
T Consensus 79 l~~G-diiID~g-n~~~~~t~~~~~~l~~~Gi~f 110 (459)
T PRK09287 79 LEKG-DIIIDGG-NSNYKDTIRREKELAEKGIHF 110 (459)
T ss_pred CCCC-CEEEECC-CCCHHHHHHHHHHHHhcCCeE
Confidence 334 5777732 468999999999998887654
No 190
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.20 E-value=0.002 Score=62.06 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=64.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc-
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH- 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h- 86 (362)
.-+|+|||+|.+|...+..+... ++.-+.+++++.++++.++++++.. ...++++.+.+. +.|+|+.+|+...+
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~-G~~~V~v~~rs~~ra~~la~~~g~~--~i~~~~l~~~l~--~aDvVi~aT~s~~~i 254 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRK-GVGKILIANRTYERAEDLAKELGGE--AVKFEDLEEYLA--EADIVISSTGAPHPI 254 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHcCCe--EeeHHHHHHHHh--hCCEEEECCCCCCce
Confidence 35899999999999999999876 5444558899999999999988632 122356666666 49999999876544
Q ss_pred --HHHHHHHHHcC-Ce-EEEeC
Q 018020 87 --VKWAISVAQKK-KH-LLMEK 104 (362)
Q Consensus 87 --~~~~~~al~~g-k~-V~~EK 104 (362)
.+.+..++... ++ ++++=
T Consensus 255 i~~e~l~~~~~~~~~~~~viDl 276 (417)
T TIGR01035 255 VSKEDVERALRERTRPLFIIDI 276 (417)
T ss_pred EcHHHHHHHHhcCCCCeEEEEe
Confidence 45555554432 22 55543
No 191
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.19 E-value=0.0016 Score=61.22 Aligned_cols=99 Identities=9% Similarity=0.191 Sum_probs=67.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC------CcEEEEEEcCCHH-----HHHHHHHHc---------CCCCCCcccCCHH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP------NAVLSAVASRSLE-----KATNFAKAN---------NFPPDAKVYGSYE 66 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~------~~~vv~v~d~~~~-----~~~~~~~~~---------~~~~~~~~~~~~~ 66 (362)
+++||+|||+|.+|...+..+.+.. +.+ |-++.++++ ..+.+.+.. .+|+++...+|++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~-V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNE-VRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCe-EEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 4689999999999999998887552 134 335666654 244443321 2344556678999
Q ss_pred HHhcCCCCcEEEEcCCCcccHHHHHHHHH-----cCCe-EEEeCCCCC
Q 018020 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQ-----KKKH-LLMEKPMAL 108 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~~h~~~~~~al~-----~gk~-V~~EKP~~~ 108 (362)
+++++ .|+|++++|+....+++..... .+.. |.+-|-+..
T Consensus 89 eav~~--aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 89 EAVED--ADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred HHHhc--CCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 98886 8999999999998888877643 2223 336666543
No 192
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.19 E-value=0.0037 Score=58.84 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=55.5
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+.||+|||. |.||..++..+++..+.+|. .+|++. ....+.++.+.. +|+|++|+|...-
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~~d----------------~~~~~~~~~v~~--aDlVilavPv~~~ 64 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDPAD----------------PGSLDPATLLQR--ADVLIFSAPIRHT 64 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcCCc----------------cccCCHHHHhcC--CCEEEEeCCHHHH
Confidence 689999999 99999999999865577876 477641 124467788764 9999999999999
Q ss_pred HHHHHHHHH
Q 018020 87 VKWAISVAQ 95 (362)
Q Consensus 87 ~~~~~~al~ 95 (362)
.+++.+...
T Consensus 65 ~~~l~~l~~ 73 (370)
T PRK08818 65 AALIEEYVA 73 (370)
T ss_pred HHHHHHHhh
Confidence 888888765
No 193
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.18 E-value=0.0047 Score=58.18 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=82.0
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC-----HHHHhcC---CCCcEEEEcC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS-----YEALLDD---KDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~e~l~~---~~~D~V~i~~ 81 (362)
+|+|+|+|.+|.-.+..++..+-.+|+ +.|++++|++.+.+..+.. .+... ..++++. ..+|+|+-++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Vi-v~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVI-VVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEE-EeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 799999999999888888777545555 6699998887665546532 12221 1122222 3699999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHH-HHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMALNVAEF-DVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~-~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
........+.++++.|-.|.. ++....+. ..-....-.+.+.+.-+........+..+.+++ .+|++-
T Consensus 247 G~~~~~~~ai~~~r~gG~v~~---vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll-~~g~i~ 315 (350)
T COG1063 247 GSPPALDQALEALRPGGTVVV---VGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLL-ASGKID 315 (350)
T ss_pred CCHHHHHHHHHHhcCCCEEEE---EeccCCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHH-HcCCCC
Confidence 977777788888888755443 22221111 111222333444544332222334677788888 777663
No 194
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.18 E-value=0.0029 Score=59.04 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=50.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
-++|||||+|.||+..+..+.+.-+++|. ++|++..... .. .+ ...+++++++.. .|+|++++|.....
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~---~~-~~----~~~~~l~ell~~--aDvIvl~lP~t~~t 214 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVV-AYDPFPNAKA---AT-YV----DYKDTIEEAVEG--ADIVTLHMPATKYN 214 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEE-EECCCccHhH---Hh-hc----cccCCHHHHHHh--CCEEEEeCCCCcch
Confidence 46899999999999999988333367766 5788764321 11 11 345699999985 89999999986543
No 195
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0053 Score=55.55 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=53.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.++|+|+|+|.||.-+++.+++....-.+...|++....+ .+.+.|+.. .+..+. ......+.|+|++++|...-.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~-~a~~lgv~d--~~~~~~-~~~~~~~aD~VivavPi~~~~ 78 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLK-AALELGVID--ELTVAG-LAEAAAEADLVIVAVPIEATE 78 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHH-HHhhcCccc--ccccch-hhhhcccCCEEEEeccHHHHH
Confidence 6899999999999999999987733221333445443332 344466431 111222 122233589999999998888
Q ss_pred HHHHHHH
Q 018020 88 KWAISVA 94 (362)
Q Consensus 88 ~~~~~al 94 (362)
+++.+..
T Consensus 79 ~~l~~l~ 85 (279)
T COG0287 79 EVLKELA 85 (279)
T ss_pred HHHHHhc
Confidence 8877766
No 196
>PLN03139 formate dehydrogenase; Provisional
Probab=97.13 E-value=0.0016 Score=61.69 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=52.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++....+ ..++.|+ ..++++++++.. .|+|++++|....
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af-G~~V~-~~d~~~~~~~-~~~~~g~----~~~~~l~ell~~--sDvV~l~lPlt~~ 268 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF-NCNLL-YHDRLKMDPE-LEKETGA----KFEEDLDAMLPK--CDVVVINTPLTEK 268 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-CCEEE-EECCCCcchh-hHhhcCc----eecCCHHHHHhh--CCEEEEeCCCCHH
Confidence 35899999999999999999876 88876 5888743222 2334453 346799999975 9999999986544
No 197
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.11 E-value=0.003 Score=58.77 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=51.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
-++|||||+|.||+..+..++.. +++|+ ++|++++....+ . ....+++++++. .|+|++++|....
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~-G~~V~-~~d~~~~~~~~~-----~----~~~~~l~ell~~--aDiVil~lP~t~~ 211 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGF-GATIT-AYDAYPNKDLDF-----L----TYKDSVKEAIKD--ADIISLHVPANKE 211 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EEeCChhHhhhh-----h----hccCCHHHHHhc--CCEEEEeCCCcHH
Confidence 45899999999999999999876 78877 678886543221 1 235689999986 8999999998753
No 198
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.10 E-value=0.00099 Score=62.26 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=62.4
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~ 82 (362)
.++||+|||+ |..|...++.|.+ +|.+++..+.+.... -+.+.. .+. . ..+.+.+ +.++ ++|+|+.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsa-Gk~~~~-~~~--~-~~v~~~~~~~~~--~~D~vf~a~p 78 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSA-GKKVTF-EGR--D-YTVEELTEDSFD--GVDIALFSAG 78 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCC-CCeeee-cCc--e-eEEEeCCHHHHc--CCCEEEECCC
Confidence 4789999997 7789999999877 899999888765321 111111 121 1 2233333 3344 5999999999
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
+....+++.++.++|+.|+
T Consensus 79 ~~~s~~~~~~~~~~g~~VI 97 (344)
T PLN02383 79 GSISKKFGPIAVDKGAVVV 97 (344)
T ss_pred cHHHHHHHHHHHhCCCEEE
Confidence 9999999999999997665
No 199
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.09 E-value=0.0053 Score=56.25 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=49.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-----c--------CC-C--------CCCcccCCHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-----N--------NF-P--------PDAKVYGSYE 66 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-----~--------~~-~--------~~~~~~~~~~ 66 (362)
-||+|||+|.||...+..+... +.+|+ ++|+++++.++..+. + +. + ......+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-GYDVT-IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY- 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-CCeEE-EEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-
Confidence 4799999999999999888766 67755 789999877643221 1 11 0 001234455
Q ss_pred HHhcCCCCcEEEEcCCCcc
Q 018020 67 ALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~~ 85 (362)
+.++ ++|+|+.++|+..
T Consensus 81 ~~~~--~aDlVieav~e~~ 97 (291)
T PRK06035 81 ESLS--DADFIVEAVPEKL 97 (291)
T ss_pred HHhC--CCCEEEEcCcCcH
Confidence 3444 4899999999886
No 200
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.08 E-value=0.0024 Score=58.77 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=54.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----C-----CCcccCCHHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----P-----DAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~-----~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|||+|||+|.+|..++..|.+. +.+|. ++++ +++.+.+.+ .|+. . .....++.++++. ++|+|++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g~~V~-~~~r-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vil 74 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-GRDVT-FLVR-PKRAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVIL 74 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-CCceE-EEec-HHHHHHHHh-CCeEEEeCCCeEEecceeecCHHHccC--CCCEEEE
Confidence 5799999999999999998766 56655 5667 666766654 3321 0 0112445555543 5899999
Q ss_pred cCCCcccHHHHHHHH
Q 018020 80 PLPTSMHVKWAISVA 94 (362)
Q Consensus 80 ~~~~~~h~~~~~~al 94 (362)
++++....+++....
T Consensus 75 avk~~~~~~~~~~l~ 89 (305)
T PRK12921 75 AVKAYQLDAAIPDLK 89 (305)
T ss_pred EecccCHHHHHHHHH
Confidence 999987777665554
No 201
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.06 E-value=0.0023 Score=57.29 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=56.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
--+|+|||+|+-|..|+..|++. +++|+... |......+-|++-|+. .-+++|+... .|+|.+.+|...|.
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDS-GlnViiGl-r~g~~s~~kA~~dGf~-----V~~v~ea~k~--ADvim~L~PDe~q~ 88 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDS-GLNVIIGL-RKGSSSWKKAKEDGFK-----VYTVEEAAKR--ADVVMILLPDEQQK 88 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhc-CCcEEEEe-cCCchhHHHHHhcCCE-----eecHHHHhhc--CCEEEEeCchhhHH
Confidence 34899999999999999999987 66654332 2222224445566652 4588898886 99999999999998
Q ss_pred HHHHHH
Q 018020 88 KWAISV 93 (362)
Q Consensus 88 ~~~~~a 93 (362)
++....
T Consensus 89 ~vy~~~ 94 (338)
T COG0059 89 EVYEKE 94 (338)
T ss_pred HHHHHH
Confidence 877743
No 202
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.06 E-value=0.0016 Score=60.57 Aligned_cols=87 Identities=6% Similarity=0.179 Sum_probs=61.0
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcE---EEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHHHHhcCCCCcEEEEc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAV---LSAVASRSLEKATNFAKANNFPPDAKVYG--SYEALLDDKDIDAVYLP 80 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~---vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~e~l~~~~~D~V~i~ 80 (362)
+.+||||||+ |..|..+++.|.++|.++ +..+.+.. ..-+.+ .++. .+ ..+. +.+++ . ++|+|+.+
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~-saGk~~--~~~~-~~-l~v~~~~~~~~-~--~~Divf~a 75 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKR-SAGKTV--QFKG-RE-IIIQEAKINSF-E--GVDIAFFS 75 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcc-cCCCCe--eeCC-cc-eEEEeCCHHHh-c--CCCEEEEC
Confidence 4689999997 888999999999999988 65555442 112221 1111 11 1222 33333 3 59999999
Q ss_pred CCCcccHHHHHHHHHcCCeEE
Q 018020 81 LPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~ 101 (362)
+|+....+++..+.++|..|+
T Consensus 76 ~~~~~s~~~~~~~~~~G~~VI 96 (347)
T PRK06728 76 AGGEVSRQFVNQAVSSGAIVI 96 (347)
T ss_pred CChHHHHHHHHHHHHCCCEEE
Confidence 999999999999999997666
No 203
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.04 E-value=0.0017 Score=60.59 Aligned_cols=67 Identities=25% Similarity=0.270 Sum_probs=51.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-.+|||||+|.||+..++.++.. +++|. ++|++.... ....++. .+.+++++++. .|+|++++|...
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~--~~~~~~~-----~~~~l~ell~~--aDiV~l~lP~t~ 216 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF-GMRIL-YYSRTRKPE--AEKELGA-----EYRPLEELLRE--SDFVSLHVPLTK 216 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EECCCCChh--hHHHcCC-----EecCHHHHHhh--CCEEEEeCCCCh
Confidence 36899999999999999999877 68876 678875432 2334443 25689999986 899999999754
No 204
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.00 E-value=0.004 Score=54.70 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=71.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcE--EEEEEcCC----HHHH-------HHHHHHcCCCCCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAV--LSAVASRS----LEKA-------TNFAKANNFPPDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~--vv~v~d~~----~~~~-------~~~~~~~~~~~~~~~~~~~~e~l~~~~ 73 (362)
+..||.|+|+|.+|...+..+... ++. -+.++|++ .++. +.++++++.. ....++.+.+..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~---~~~~~l~~~l~~-- 97 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE---KTGGTLKEALKG-- 97 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC---cccCCHHHHHhc--
Confidence 356999999999999988888766 555 56799998 4443 5566666421 122367677764
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEe
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ-LMDG 130 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~-~~v~ 130 (362)
+|+|+-+|+.....+...+.+..+ +++. |+. ++. ...+.+.|++.|.+ +..|
T Consensus 98 ~dvlIgaT~~G~~~~~~l~~m~~~-~ivf--~ls-nP~-~e~~~~~A~~~ga~i~a~G 150 (226)
T cd05311 98 ADVFIGVSRPGVVKKEMIKKMAKD-PIVF--ALA-NPV-PEIWPEEAKEAGADIVATG 150 (226)
T ss_pred CCEEEeCCCCCCCCHHHHHhhCCC-CEEE--EeC-CCC-CcCCHHHHHHcCCcEEEeC
Confidence 899999998655444444444433 4333 233 221 13466777777774 5555
No 205
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.011 Score=54.78 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=78.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEc----CC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLP----LP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~----~~ 82 (362)
+..||+||++-||+..+..+.++ ++. |+|++|+.++.++|-++.+-.++..-+.|++|+++. ..|--|++. +|
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~-G~~-VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADH-GYT-VAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhc-Cce-EEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 56799999999999999999888 777 559999999999998887633455668899998765 345555443 33
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
-+.--+.+...|+.| .|+++-- .....+..+-.+...+.|+.
T Consensus 81 VD~~I~~L~p~Le~g-DIiIDGG-Ns~y~DT~RR~~eL~~~Gi~ 122 (473)
T COG0362 81 VDAVIEQLLPLLEKG-DIIIDGG-NSHYKDTIRRNKELSEKGIL 122 (473)
T ss_pred HHHHHHHHHhhcCCC-CEEEeCC-CcCCchHHHHHHHHHhcCCe
Confidence 344455555555555 5566533 34455555555555555654
No 206
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.98 E-value=0.0045 Score=56.46 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=75.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC---HHHHHHHHHHcCCCCCC-cccCCHHHH--h--cCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRS---LEKATNFAKANNFPPDA-KVYGSYEAL--L--DDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~---~~~~~~~~~~~~~~~~~-~~~~~~~e~--l--~~~~~D~V~i~ 80 (362)
-++.|||+|..++..+..+... ++.-+.|++|+ .++++.++++++...+. ..+.++++. + ...+.|+|+.+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~-g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEEC
Confidence 4799999999988877777666 55456699998 46888888877421110 112333321 1 11358999999
Q ss_pred CCCcccHH----H--HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHH
Q 018020 81 LPTSMHVK----W--AISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQ 141 (362)
Q Consensus 81 ~~~~~h~~----~--~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~ 141 (362)
||...... . -...++.+ ++++| +..++.+ ..+++.|++.|.+..-|.....+.....
T Consensus 204 Tp~Gm~~~~~~~~~~~~~~l~~~-~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~Gl~ML~~Qa~~~ 266 (288)
T PRK12749 204 TKVGMKPLENESLVNDISLLHPG-LLVTE--CVYNPHM-TKLLQQAQQAGCKTIDGYGMLLWQGAEQ 266 (288)
T ss_pred CCCCCCCCCCCCCCCcHHHCCCC-CEEEE--ecCCCcc-CHHHHHHHHCCCeEECCHHHHHHHHHHH
Confidence 99765431 1 11223333 33333 2233322 4677788888888877755444333333
No 207
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.97 E-value=0.0019 Score=60.39 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=60.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH-HhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA-LLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e-~l~~~~~D~V~i~~~~~ 84 (362)
+||+|||+ |..|...++.|.+ +|.++++++.... +..+.+. ++. .. ..+.+.++ .++ ++|+|+.|+|..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~-~~g~~l~--~~g-~~-i~v~d~~~~~~~--~vDvVf~A~g~g 74 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR-SAGKELS--FKG-KE-LKVEDLTTFDFS--GVDIALFSAGGS 74 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc-cCCCeee--eCC-ce-eEEeeCCHHHHc--CCCEEEECCChH
Confidence 68999997 7889999999987 7889999887542 2222221 111 11 22333332 233 699999999999
Q ss_pred ccHHHHHHHHHcCCeEE
Q 018020 85 MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~ 101 (362)
...+++.+++++|..|+
T Consensus 75 ~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 75 VSKKYAPKAAAAGAVVI 91 (334)
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 99999999999998444
No 208
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.97 E-value=0.037 Score=51.84 Aligned_cols=130 Identities=11% Similarity=0.072 Sum_probs=79.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhcCC-CCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLDDK-DIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~~~-~~D~V~i~~~~ 83 (362)
-+|.|+|+|.+|...+..++.. ++..+.+.++++++.+ +++++|.. .++ .+++++.... .+|+|+-++..
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~-~a~~lGa~---~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLS-LAREMGAD---KLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHH-HHHHcCCc---EEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 3789999999999888888777 6643446677877665 56678753 122 2455555432 48999999987
Q ss_pred cccHHHHHHHHHcCCeE-EEeCC---CCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 84 SMHVKWAISVAQKKKHL-LMEKP---MALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V-~~EKP---~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
....+.+..+++.|-.+ ++.-+ ...+. .... .+++.+.-.+ .+...+.++-+++ ++|.|-
T Consensus 246 ~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~------~~~~-~k~~~i~g~~--~~~~~~~~~~~l~-~~g~i~ 309 (343)
T PRK09880 246 PSSINTCLEVTRAKGVMVQVGMGGAPPEFPM------MTLI-VKEISLKGSF--RFTEEFNTAVSWL-ANGVIN 309 (343)
T ss_pred HHHHHHHHHHhhcCCEEEEEccCCCCCccCH------HHHH-hCCcEEEEEe--eccccHHHHHHHH-HcCCCC
Confidence 66667778888877554 44322 12222 1222 2344443222 3344577778888 667663
No 209
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.0051 Score=54.04 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=61.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH-HcCCCCCCcccCCHHHHhcC---CCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK-ANNFPPDAKVYGSYEALLDD---KDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~e~l~~---~~~D~V~i~~~~~ 84 (362)
|+|.|||+|..|...++.|.+. +.+++ +.|+++++++.+.. +++.. .+....+-.+.|.+ .+.|+++++|.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g~~Vv-~Id~d~~~~~~~~~~~~~~~-~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-GHNVV-LIDRDEERVEEFLADELDTH-VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-CCceE-EEEcCHHHHHHHhhhhcceE-EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 5799999999999999999877 56655 67889998887444 45432 11122333344433 5799999999997
Q ss_pred ccHHHHHH-HHH-cC-CeEEE
Q 018020 85 MHVKWAIS-VAQ-KK-KHLLM 102 (362)
Q Consensus 85 ~h~~~~~~-al~-~g-k~V~~ 102 (362)
.-..++.. +++ .| +.|+.
T Consensus 78 ~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEE
Confidence 66555554 444 46 44554
No 210
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.91 E-value=0.0043 Score=59.90 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=58.0
Q ss_pred eEEEEEeccHHHHHH--HHHHh---cCCCcEEEEEEcCCHHHHHHHHH-------HcCCCCCCcccCCHHHHhcCCCCcE
Q 018020 9 IRFGIIGAADIARKL--SRAIT---LAPNAVLSAVASRSLEKATNFAK-------ANNFPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~--~~~~~---~~~~~~vv~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
+||+|||+|++|... +..+. ..++.+|+ ++|+++++++.... ..+.+..+...+|+++.+++ .|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~--AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG--ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC--CCE
Confidence 589999999998753 22343 34455655 89999988765433 23332234457888899886 999
Q ss_pred EEEcCCCcccHHHHH---HHHHcC
Q 018020 77 VYLPLPTSMHVKWAI---SVAQKK 97 (362)
Q Consensus 77 V~i~~~~~~h~~~~~---~al~~g 97 (362)
|+++.+...+..... -.+|.|
T Consensus 78 Vi~ai~~~~~~~~~~de~i~~K~g 101 (423)
T cd05297 78 VINTIQVGGHEYTETDFEIPEKYG 101 (423)
T ss_pred EEEeeEecCccchhhhhhhHHHcC
Confidence 999999776655544 345555
No 211
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.86 E-value=0.0028 Score=58.67 Aligned_cols=111 Identities=17% Similarity=0.227 Sum_probs=69.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
.++||||+|.+|+..+..++.. +++|+ ++|+...+.. +...+ ....++++++|+. .|+|++.+|-..--
T Consensus 143 kTvGIiG~G~IG~~va~~l~af-gm~v~-~~d~~~~~~~--~~~~~----~~~~~~Ld~lL~~--sDiv~lh~PlT~eT- 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF-GMKVI-GYDPYSPRER--AGVDG----VVGVDSLDELLAE--ADILTLHLPLTPET- 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEE-EECCCCchhh--hcccc----ceecccHHHHHhh--CCEEEEcCCCCcch-
Confidence 4799999999999999999888 89987 6888322211 11112 2356899999996 99999988853210
Q ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 89 WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 89 ~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
+|++ +.++...| +.|. ++++..+--.=....|.+.+ ++|.|.
T Consensus 212 ---------~g~i-------~~~~~a~M-----K~ga-ilIN~aRG~vVde~aL~~AL-~~G~i~ 253 (324)
T COG0111 212 ---------RGLI-------NAEELAKM-----KPGA-ILINAARGGVVDEDALLAAL-DSGKIA 253 (324)
T ss_pred ---------hccc-------CHHHHhhC-----CCCe-EEEECCCcceecHHHHHHHH-HcCCcc
Confidence 1111 12221111 1233 56666655444556777777 666554
No 212
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=96.85 E-value=0.0099 Score=55.11 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=67.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HHHHHHHHHH---cCCCC---------------CCccc--CCHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATNFAKA---NNFPP---------------DAKVY--GSYE 66 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~~~~~~~~~---~~~~~---------------~~~~~--~~~~ 66 (362)
++||||-|+|.||+..++.+...+++++++|-|.. .+.+..+-+- +|.-+ .+.++ .+++
T Consensus 2 ~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (343)
T PRK07729 2 KTKVAINGFGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK 81 (343)
T ss_pred ceEEEEECcChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh
Confidence 37999999999999888886656789999998863 3333333211 12100 11111 2444
Q ss_pred HH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 67 AL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 67 e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++ ..+.++|+|+-||......+.+...+++| |-|.+=-|
T Consensus 82 ~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (343)
T PRK07729 82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP 122 (343)
T ss_pred hCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC
Confidence 44 23357999999999999999999999999 55555434
No 213
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.83 E-value=0.017 Score=53.05 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=49.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcCC-C--------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANNF-P--------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~~-~--------~~~~~~~~~~e~l 69 (362)
.||+|||+|.||...+..+... +.+|+ ++|+++++++...+ +.|. . ....+.++++ .+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-GMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLE-EL 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHH-Hh
Confidence 5799999999999999998766 67765 78999887653211 1111 0 0012344554 45
Q ss_pred cCCCCcEEEEcCCCccc
Q 018020 70 DDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h 86 (362)
+ ++|+|+.+.|...+
T Consensus 82 ~--~aD~Vieav~e~~~ 96 (295)
T PLN02545 82 R--DADFIIEAIVESED 96 (295)
T ss_pred C--CCCEEEEcCccCHH
Confidence 5 49999999996655
No 214
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.80 E-value=0.008 Score=50.57 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=25.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
||+|||+|.+|...+..+.+. ++.=+.++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 689999999999999988776 554344777654
No 215
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=96.80 E-value=0.00059 Score=51.23 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=58.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~~~ 85 (362)
|||.|||.|...+..+..+.+.+.++-+.++.-|.-. ..+.+...+ -.+|+++++ .+.++|+|+|....+.
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~aPGN~G~-~~~~~~~~~-----~~~d~~~l~~~a~~~~idlvvvGPE~pL 74 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVAPGNPGT-AELGKNVPI-----DITDPEELADFAKENKIDLVVVGPEAPL 74 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEEE--TTG-GGTSEEE-S------TT-HHHHHHHHHHTTESEEEESSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEeCCCHHH-HhhceecCC-----CCCCHHHHHHHHHHcCCCEEEECChHHH
Confidence 7999999996655667777788888777677655421 111111211 245666665 4578999999998888
Q ss_pred cHHHHHHHHHcCCeEE
Q 018020 86 HVKWAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~~~~~al~~gk~V~ 101 (362)
-.-++...-++|.+||
T Consensus 75 ~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 75 VAGLADALRAAGIPVF 90 (100)
T ss_dssp HTTHHHHHHHTT-CEE
T ss_pred HHHHHHHHHHCCCcEE
Confidence 8899999999998887
No 216
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.78 E-value=0.0097 Score=58.66 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=54.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcC-CC--------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANN-FP--------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~-~~--------~~~~~~~~~~e~l 69 (362)
.||+|||+|.||...+..+... +++|+ ++|++++.+++..+ +.| +. ......+|++++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a-G~~V~-l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l- 82 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA-GHQVL-LYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL- 82 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh-
Confidence 5799999999999999988766 78866 89999988764311 112 10 112456788764
Q ss_pred cCCCCcEEEEcCCCcccHHH
Q 018020 70 DDKDIDAVYLPLPTSMHVKW 89 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~ 89 (362)
. ++|+|+-+.|.......
T Consensus 83 ~--~aDlVIEav~E~~~vK~ 100 (503)
T TIGR02279 83 A--DAGLVIEAIVENLEVKK 100 (503)
T ss_pred C--CCCEEEEcCcCcHHHHH
Confidence 3 59999999998765433
No 217
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.012 Score=53.89 Aligned_cols=144 Identities=9% Similarity=0.067 Sum_probs=88.0
Q ss_pred eeEEEEEec-cHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||||+|+ |-.|+.++..|.+ ++.++.+.+.-..+...++. -+|+- ....+-++..++..-.++|+|+-|.+...
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~-~~f~~-~~~~v~~~~~~~~~~~~~Divf~~ag~~~ 78 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY-IEFGG-KSIGVPEDAADEFVFSDVDIVFFAAGGSV 78 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc-ccccC-ccccCccccccccccccCCEEEEeCchHH
Confidence 479999996 7779999999987 88887665555444333321 11110 00123344445544457999999999999
Q ss_pred cHHHHHHHHHcCCeEEE---------eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceE
Q 018020 86 HVKWAISVAQKKKHLLM---------EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLR 156 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~---------EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~ 156 (362)
-.++..++.++|..|+- +=|+....--...|.+.-+ +| .+..+-|.-=......|+-+. +...|-+|.
T Consensus 79 s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg-~IianpNCst~~l~~aL~PL~-~~~~i~~v~ 155 (334)
T COG0136 79 SKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RG-FIIANPNCSTIQLVLALKPLH-DAFGIKRVV 155 (334)
T ss_pred HHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhhh-CC-CEEECCChHHHHHHHHHHHHH-hhcCceEEE
Confidence 99999999999987763 2255443333333444444 55 444454444455566777776 434344433
No 218
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=96.74 E-value=0.012 Score=54.71 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=67.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcC---CCcEEEEEEcCCH-HHHHHH---HHHcCC-C--------------CCCccc--CC
Q 018020 9 IRFGIIGAADIARKLSRAITLA---PNAVLSAVASRSL-EKATNF---AKANNF-P--------------PDAKVY--GS 64 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~---~~~~vv~v~d~~~-~~~~~~---~~~~~~-~--------------~~~~~~--~~ 64 (362)
+||||+|+|.+|+..++.+... +++++++|-|... +....+ ...+|. + +.+.++ .+
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 81 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHERD 81 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCC
Confidence 7999999999999998887642 4799999887543 222222 111110 0 011121 14
Q ss_pred HHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMA 107 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~ 107 (362)
++++ ..+.++|+|+-||......+.+..++++| |-|.+--|+.
T Consensus 82 p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~ 126 (336)
T PRK13535 82 IASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGS 126 (336)
T ss_pred cccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcc
Confidence 4444 23358999999999999999999999999 6777776754
No 219
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.70 E-value=0.0037 Score=52.90 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=44.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----------C-CC--------CCCcccCCHHHHhc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----------N-FP--------PDAKVYGSYEALLD 70 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----------~-~~--------~~~~~~~~~~e~l~ 70 (362)
||+|||+|.||...+..+... +++|+ ++|++++..+...+.. + +. ....+.+|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 699999999999998888777 78866 8999988765432221 1 10 1234456666665
Q ss_pred CCCCcEEEEcCCCcc
Q 018020 71 DKDIDAVYLPLPTSM 85 (362)
Q Consensus 71 ~~~~D~V~i~~~~~~ 85 (362)
+ +|+|+=+.|...
T Consensus 78 ~--adlViEai~E~l 90 (180)
T PF02737_consen 78 D--ADLVIEAIPEDL 90 (180)
T ss_dssp T--ESEEEE-S-SSH
T ss_pred h--hheehhhccccH
Confidence 3 677776666543
No 220
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.69 E-value=0.028 Score=48.00 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=78.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEc-CCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLP-LPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~-~~~~ 84 (362)
+|||++|..|..|.+.+..+.-. -..++++|.+. ++. ++ ...+..+++|.. ++.|+++-. ..|+
T Consensus 1 ~mki~vlt~g~yG~R~~~nl~~~~f~~~~v~v~~~-Pe~---------~~---~fie~P~~~Lp~~~e~Di~va~~lHPD 67 (224)
T COG1810 1 MMKILVLTDGEYGKRAVNNLACKGFKNQFVAVKEY-PEE---------LP---DFIEEPEDLLPKLPEADIVVAYGLHPD 67 (224)
T ss_pred CcEEEEEeeccchHHHHHhHhhhccccceEEEEec-ccc---------cc---chhhCHHHhcCCCCCCCEEEEeccCcc
Confidence 48999999999999998887643 23677888876 331 11 345677888876 789998854 6777
Q ss_pred ccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 85 MHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 85 ~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.-..++..+.+.| +.|++ |....-...++|.+.+.+.|+.+.
T Consensus 68 l~~~L~e~~~~~~~~alIv--p~~~~~g~rkqL~~~~~~~g~e~~ 110 (224)
T COG1810 68 LLLALPEKAAEGGVKALIV--PAEPPEGLRKQLKEFCEELGVEFE 110 (224)
T ss_pred HHHHHHHHHHhCCccEEEE--ecCCChhHHHHHHHHhhhcceeee
Confidence 8888898888888 77877 555566777777777777777664
No 221
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.032 Score=50.76 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=95.6
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-----CHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG-----SYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~l~~~~~D~V~i~~ 81 (362)
..-+.|.|+ |+.|.-.+..+... +... +++.||..+...+..++|. ++..|. .++++++. .++|+.|.
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~-g~~~-aLAgRs~~kl~~l~~~LG~--~~~~~p~~~p~~~~~~~~~--~~VVlncv 79 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLARE-GLTA-ALAGRSSAKLDALRASLGP--EAAVFPLGVPAALEAMASR--TQVVLNCV 79 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHc-CCch-hhccCCHHHHHHHHHhcCc--cccccCCCCHHHHHHHHhc--ceEEEecc
Confidence 577899997 77787778888766 4443 6889999999999999984 344443 44666665 99999999
Q ss_pred CCccc--HHHHHHHHHcCCeEEEeCCCCCCH---HHHHHH-HHHHHHcCCEEEEeeecc---cCh-hHHHHHHhhcCCCC
Q 018020 82 PTSMH--VKWAISVAQKKKHLLMEKPMALNV---AEFDVI-LNACEENGVQLMDGTMWV---HNP-RTAQMKEFVSDPQR 151 (362)
Q Consensus 82 ~~~~h--~~~~~~al~~gk~V~~EKP~~~~~---~~~~~l-~~~a~~~~~~~~v~~~~r---~~p-~~~~~k~~i~~~g~ 151 (362)
-|..| .+++..|+.+|.|.+ + ++--+ +.+..+ .+.|+++|+.+.-++-+= +.- .+..+++.+ .-.
T Consensus 80 GPyt~~g~plv~aC~~~GTdY~-D--iTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~~~~~--~d~ 154 (382)
T COG3268 80 GPYTRYGEPLVAACAAAGTDYA-D--ITGEIMFFENSIDLYHAQAADAGARIIPGCGFDSIPSDLGVYALLKQAL--PDG 154 (382)
T ss_pred ccccccccHHHHHHHHhCCCee-e--ccccHHHHHHHHHHHHHHHHhcCCEEeccCCCCcCccchHHHHHHHhhC--ccc
Confidence 88765 688999999999954 3 33333 333344 556888998876554333 222 334444444 344
Q ss_pred ccceEEEEE
Q 018020 152 FGQLRTMHS 160 (362)
Q Consensus 152 iG~i~~i~~ 160 (362)
+|++...+.
T Consensus 155 ~~~~~~t~l 163 (382)
T COG3268 155 TEELIATHL 163 (382)
T ss_pred ccchhhhhe
Confidence 566554443
No 222
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.67 E-value=0.015 Score=57.25 Aligned_cols=88 Identities=11% Similarity=-0.015 Sum_probs=61.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-||+|+|+|..|...+..++.. +.+++ ++|..+++.+. .++.|+. ........+.+. ++|+|+++..-+...+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~-G~~v~-~~D~~~~~~~~-l~~~g~~--~~~~~~~~~~l~--~~D~VV~SpGi~~~~p 85 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF-GARPT-VCDDDPDALRP-HAERGVA--TVSTSDAVQQIA--DYALVVTSPGFRPTAP 85 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHH-HHhCCCE--EEcCcchHhHhh--cCCEEEECCCCCCCCH
Confidence 4899999999999888877766 67776 48877665554 3445653 111122334454 4898888776666667
Q ss_pred HHHHHHHcCCeEEEe
Q 018020 89 WAISVAQKKKHLLME 103 (362)
Q Consensus 89 ~~~~al~~gk~V~~E 103 (362)
.+.+|.++|.+|+.|
T Consensus 86 ~~~~a~~~gi~v~~~ 100 (488)
T PRK03369 86 VLAAAAAAGVPIWGD 100 (488)
T ss_pred HHHHHHHCCCcEeeH
Confidence 888889999999865
No 223
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.66 E-value=0.01 Score=56.89 Aligned_cols=83 Identities=12% Similarity=0.025 Sum_probs=56.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
--+|+|+|+|.+|...+..++.. +++|+ ++|+++.++...+ ..|. . ..+++++++ +.|+|+.+|.+..-.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~Vi-V~d~dp~ra~~A~-~~G~----~-v~~l~eal~--~aDVVI~aTG~~~vI 281 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL-GARVI-VTEVDPICALQAA-MDGF----R-VMTMEEAAE--LGDIFVTATGNKDVI 281 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EEcCCchhhHHHH-hcCC----E-ecCHHHHHh--CCCEEEECCCCHHHH
Confidence 35899999999999999999888 67754 7899887764433 3353 2 346788876 599999888653211
Q ss_pred -HHHHHHHHcCCeE
Q 018020 88 -KWAISVAQKKKHL 100 (362)
Q Consensus 88 -~~~~~al~~gk~V 100 (362)
......++.|.-+
T Consensus 282 ~~~~~~~mK~Gail 295 (425)
T PRK05476 282 TAEHMEAMKDGAIL 295 (425)
T ss_pred HHHHHhcCCCCCEE
Confidence 1233444555333
No 224
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.66 E-value=0.037 Score=54.74 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=56.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHH----------HHcC-CC--------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFA----------KANN-FP--------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~----------~~~~-~~--------~~~~~~~~~~e~l 69 (362)
-||+|||+|.||...+..+... +++|+ ++|++++.+++.. .+.| +. ..+...+|++++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~- 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVL-LYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL- 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 5699999999999999988766 78866 8999998877631 1122 10 013456788764
Q ss_pred cCCCCcEEEEcCCCcccHHHHH
Q 018020 70 DDKDIDAVYLPLPTSMHVKWAI 91 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~~~ 91 (362)
. ++|+|+-+.|.........
T Consensus 85 ~--~aDlViEav~E~~~vK~~v 104 (507)
T PRK08268 85 A--DCDLVVEAIVERLDVKQAL 104 (507)
T ss_pred C--CCCEEEEcCcccHHHHHHH
Confidence 3 5999999999987755443
No 225
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.65 E-value=0.0058 Score=55.90 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=76.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH---HHHHHHHHHcCCC-CCCcc----cCCH---HHHhcCCCCcEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL---EKATNFAKANNFP-PDAKV----YGSY---EALLDDKDIDAV 77 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~---~~~~~~~~~~~~~-~~~~~----~~~~---~e~l~~~~~D~V 77 (362)
-++.|+|+|.+|+..+..+... ++.-+.|++|+. ++++++++++.-. +.+.+ .++. ++.++ +.|++
T Consensus 127 k~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~--~~Dil 203 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD-GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIA--SSDIL 203 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhc--cCCEE
Confidence 4789999999999888888766 565455889986 6777776654210 01011 1222 22333 47999
Q ss_pred EEcCCCcccHH-----H-HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHH
Q 018020 78 YLPLPTSMHVK-----W-AISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQM 142 (362)
Q Consensus 78 ~i~~~~~~h~~-----~-~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~ 142 (362)
+.+||...+.. + -...+..+ .+++| +..++.+ -.+++.|++.|.+..-|............
T Consensus 204 INaTp~Gm~~~~~~~~~~~~~~l~~~-~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~G~~ML~~Qa~~~f 270 (289)
T PRK12548 204 VNATLVGMKPNDGETNIKDTSVFRKD-LVVAD--TVYNPKK-TKLLEDAEAAGCKTVGGLGMLLWQGAEAY 270 (289)
T ss_pred EEeCCCCCCCCCCCCCCCcHHhcCCC-CEEEE--ecCCCCC-CHHHHHHHHCCCeeeCcHHHHHHHHHHHH
Confidence 99999776431 1 12334433 34444 3344433 56788888888888777555443333333
No 226
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.64 E-value=0.0042 Score=59.17 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=55.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEE-----EEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSA-----VASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~-----v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
..+|+|||+|.+|..++..++.. +++++. +.|.+....++ +.+-|++ ..+++|++.. .|+|++.+|
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdS-GvnVvvglr~~~id~~~~s~~k-A~~dGF~-----v~~~~Ea~~~--ADvVviLlP 106 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDS-GLDISYALRKEAIAEKRASWRK-ATENGFK-----VGTYEELIPQ--ADLVINLTP 106 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccc-cceeEEeccccccccccchHHH-HHhcCCc-----cCCHHHHHHh--CCEEEEcCC
Confidence 46899999999999888888877 677662 22222222222 3333653 3579999886 999999999
Q ss_pred CcccHHHHH---HHHHcCC
Q 018020 83 TSMHVKWAI---SVAQKKK 98 (362)
Q Consensus 83 ~~~h~~~~~---~al~~gk 98 (362)
...|..+-. ..|+.|.
T Consensus 107 Dt~q~~v~~~i~p~LK~Ga 125 (487)
T PRK05225 107 DKQHSDVVRAVQPLMKQGA 125 (487)
T ss_pred hHHHHHHHHHHHhhCCCCC
Confidence 987765553 3444444
No 227
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.62 E-value=0.0081 Score=59.64 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=78.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-++.|+|+|.+|+..+..+.+. +++|+ +++|+.++++.++++++.. ...+.+..+.+. .+.|+|+.+||...+.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~-G~~V~-i~nR~~e~a~~la~~l~~~--~~~~~~~~~~~~-~~~diiINtT~vGm~~ 453 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEK-GARVV-IANRTYERAKELADAVGGQ--ALTLADLENFHP-EEGMILANTTSVGMQP 453 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHHHHHHhCCc--eeeHhHhhhhcc-ccCeEEEecccCCCCC
Confidence 34789999999999999988877 56655 8899999999998887521 122333333332 2468888888876543
Q ss_pred H-----HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChh
Q 018020 88 K-----WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPR 138 (362)
Q Consensus 88 ~-----~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~ 138 (362)
. +-...++. ..+++| +..++.+ -.+++.|++.|.++.-|........
T Consensus 454 ~~~~~pl~~~~l~~-~~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~Gl~MLv~Qa 505 (529)
T PLN02520 454 NVDETPISKHALKH-YSLVFD--AVYTPKI-TRLLREAEESGAIIVSGTEMFIRQA 505 (529)
T ss_pred CCCCCcccHhhCCC-CCEEEE--eccCCCc-CHHHHHHHHCCCeEeCcHHHHHHHH
Confidence 1 22222332 345554 3344433 5678888888988877754444333
No 228
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.61 E-value=0.027 Score=51.34 Aligned_cols=101 Identities=10% Similarity=0.099 Sum_probs=69.5
Q ss_pred eEEEEEeccHH--------------------HHHHHHHHhcCCCcEEEEEEcCCHHHHHH----HHHHcCCCCCCcccCC
Q 018020 9 IRFGIIGAADI--------------------ARKLSRAITLAPNAVLSAVASRSLEKATN----FAKANNFPPDAKVYGS 64 (362)
Q Consensus 9 ~~v~iiG~G~~--------------------g~~~~~~~~~~~~~~vv~v~d~~~~~~~~----~~~~~~~~~~~~~~~~ 64 (362)
|||.+.|+|+- |...+..|.+. +++|+ ++|+++++++. ...+.|. ...+|
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA-GheV~-V~Drnrsa~e~e~~e~LaeaGA----~~AaS 74 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA-GHDVV-LAEPNREFMSDDLWKKVEDAGV----KVVSD 74 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC-CCEEE-EEeCChhhhhhhhhHHHHHCCC----eecCC
Confidence 57888888852 33556666555 67765 89998765432 2233453 57789
Q ss_pred HHHHhcCCCCcEEEEcCCCcccHHHHH-HH---HHcCCeEEEeCCCCCCHHHHHHHHHH
Q 018020 65 YEALLDDKDIDAVYLPLPTSMHVKWAI-SV---AQKKKHLLMEKPMALNVAEFDVILNA 119 (362)
Q Consensus 65 ~~e~l~~~~~D~V~i~~~~~~h~~~~~-~a---l~~gk~V~~EKP~~~~~~~~~~l~~~ 119 (362)
..++.++ .|+|++++|+..+.+-+. .. +..| +++++-. +.+++...++++-
T Consensus 75 ~aEAAa~--ADVVIL~LPd~aaV~eVl~GLaa~L~~G-aIVID~S-TIsP~t~~~~~e~ 129 (341)
T TIGR01724 75 DKEAAKH--GEIHVLFTPFGKGTFSIARTIIEHVPEN-AVICNTC-TVSPVVLYYSLEK 129 (341)
T ss_pred HHHHHhC--CCEEEEecCCHHHHHHHHHHHHhcCCCC-CEEEECC-CCCHHHHHHHHHH
Confidence 9999986 899999999988764442 22 2334 5777753 6688888888887
No 229
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=96.61 E-value=0.019 Score=53.10 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=67.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HHHHHHHHH---HcCCCC---------------CCccc--CCHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATNFAK---ANNFPP---------------DAKVY--GSYE 66 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~~~~~~~~---~~~~~~---------------~~~~~--~~~~ 66 (362)
++||||-|+|.||+..++.+...++++|++|-|.. .+....+-+ .+|.-+ .+.++ .+++
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 81 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh
Confidence 37999999999999888886656789999998853 233332211 112100 01111 1444
Q ss_pred HH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 67 AL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 67 e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++ ..+.++|+|+-||......+.+...+++| |-|.+--|
T Consensus 82 ~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (331)
T PRK15425 82 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP 122 (331)
T ss_pred hCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC
Confidence 44 23347999999999999999999999999 66666555
No 230
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=96.59 E-value=0.013 Score=54.30 Aligned_cols=98 Identities=20% Similarity=0.134 Sum_probs=65.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcCC-HHHHHHHHH---HcCCCC---------------CCccc--CC
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--PNAVLSAVASRS-LEKATNFAK---ANNFPP---------------DAKVY--GS 64 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~~-~~~~~~~~~---~~~~~~---------------~~~~~--~~ 64 (362)
++||||-|+|.||+..++.+... +++++|+|-|.. .+....+-+ -+|.-+ .+.++ .+
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence 47999999999999988876544 579999999863 333332211 122110 11111 12
Q ss_pred HHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++++ ..+.++|+|+-||......+.+...+++| |-|.+--|
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap 123 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP 123 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC
Confidence 2333 22337999999999999999999999999 66666545
No 231
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=96.58 E-value=0.019 Score=53.32 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=68.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHH---HcCCCC---------------CCccc--CCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAK---ANNFPP---------------DAKVY--GSY 65 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~---~~~~~~---------------~~~~~--~~~ 65 (362)
++||||.|+|.||+...+.+...++++++++.|+ +.+....+-+ -+|..+ .+.++ .++
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~ 81 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAI 81 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCCh
Confidence 4899999999999999998877788999999985 3444443322 123211 01111 144
Q ss_pred HHHhcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 66 ~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
+++-= .++|+|+-||......+.+..++++| |-|.+=-|
T Consensus 82 ~~~~w-~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 82 ADTDW-SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred hhCCc-cCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC
Confidence 44422 27999999999999999999999999 66666555
No 232
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=96.57 E-value=0.015 Score=54.81 Aligned_cols=98 Identities=19% Similarity=0.121 Sum_probs=66.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcCCH-HHHHHH---HHHcCC-C---------------CCCccc--C
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--PNAVLSAVASRSL-EKATNF---AKANNF-P---------------PDAKVY--G 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~~~-~~~~~~---~~~~~~-~---------------~~~~~~--~ 63 (362)
++||||.|+|.+|+..++.+... |..+|++|-|... +.+..+ ...+|. + +.+.++ .
T Consensus 60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~ 139 (395)
T PLN03096 60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDR 139 (395)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcC
Confidence 48999999999999999987644 6899999988643 222211 111110 0 001111 1
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
|++++ ..+.++|+|+-||......+.+...+++| |-|++--|
T Consensus 140 dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap 183 (395)
T PLN03096 140 NPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 183 (395)
T ss_pred CcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC
Confidence 23333 22347999999999999999999999999 67777656
No 233
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.56 E-value=0.004 Score=58.74 Aligned_cols=62 Identities=15% Similarity=0.278 Sum_probs=47.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+|||||+|.+|+..++.++.. +++++ +||+.... . +. . ..+.+++++++. .|+|++.+|-
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~-G~~V~-~~dp~~~~-~------~~--~-~~~~~L~ell~~--sDiI~lh~PL 177 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEAL-GIKTL-LCDPPRAD-R------GD--E-GDFRSLDELVQE--ADILTFHTPL 177 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EECCcccc-c------cc--c-cccCCHHHHHhh--CCEEEEeCCC
Confidence 46899999999999999999877 89877 57864321 0 11 0 236799999986 8999998884
No 234
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.53 E-value=0.019 Score=53.19 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=68.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHH---cCC-CC--------------CCccc--CCHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKA---NNF-PP--------------DAKVY--GSYE 66 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~---~~~-~~--------------~~~~~--~~~~ 66 (362)
+||||-|+|.||+..++.+...+++++++|-|+ +.+.+..+-+- +|. +. .++++ .++.
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp~ 82 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDPA 82 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCChh
Confidence 799999999999988888665678999999884 44444333210 121 10 01111 3444
Q ss_pred HH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 67 AL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 67 e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
++ ..+.++|+|+-||......+.+..++++| |-|.+--|.
T Consensus 83 ~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~ 124 (337)
T PTZ00023 83 AIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPP 124 (337)
T ss_pred hCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCC
Confidence 54 34458999999999999999999999999 566655453
No 235
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.51 E-value=0.015 Score=50.14 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=28.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
+.-||.|||+|.+|...+..|... ++.-+.++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 356899999999999999999877 554344778763
No 236
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.49 E-value=0.0077 Score=55.91 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=49.0
Q ss_pred eeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.++||||+|.||+..++.++ .. +++|+ .+|+.... .....++. .+.+++++|+. .|+|++++|-.
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f-gm~V~-~~~~~~~~--~~~~~~~~-----~~~~l~ell~~--sDvv~lh~plt 211 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF-NMPIL-YNARRHHK--EAEERFNA-----RYCDLDTLLQE--SDFVCIILPLT 211 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC-CCEEE-EECCCCch--hhHHhcCc-----EecCHHHHHHh--CCEEEEeCCCC
Confidence 368999999999999999887 55 78877 57765321 11234443 35699999986 99999998854
No 237
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.49 E-value=0.024 Score=43.94 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=64.0
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC---CHHHHhc--CCCCcEEEEcCCCcc
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG---SYEALLD--DKDIDAVYLPLPTSM 85 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~--~~~~D~V~i~~~~~~ 85 (362)
|.|+|+|.+|...+..|++ .+.+++ ++|.++++.+.+.++. .+ .++. +.+.+.+ -.+.+.|++++++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vv-vid~d~~~~~~~~~~~-~~---~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~ 74 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVV-VIDRDPERVEELREEG-VE---VIYGDATDPEVLERAGIEKADAVVILTDDDE 74 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEE-EEESSHHHHHHHHHTT-SE---EEES-TTSHHHHHHTTGGCESEEEEESSSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEE-EEECCcHHHHHHHhcc-cc---cccccchhhhHHhhcCccccCEEEEccCCHH
Confidence 6799999999999999998 466766 7789999888887654 32 2333 3333322 246899999999876
Q ss_pred cHHHHHHHHHc---CCeEEEeCCCCCCHHHHHHH
Q 018020 86 HVKWAISVAQK---KKHLLMEKPMALNVAEFDVI 116 (362)
Q Consensus 86 h~~~~~~al~~---gk~V~~EKP~~~~~~~~~~l 116 (362)
---.+...++. ..+|++. ..+.+..+.+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~---~~~~~~~~~l 105 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIAR---VNDPENAELL 105 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEE---ESSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEE---ECCHHHHHHH
Confidence 55555444443 3677763 4455554443
No 238
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.49 E-value=0.005 Score=56.86 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=49.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
..+|||||+|.||+..++.++.. ++++. ++|++.+....+. .+ .-+.++++++.. .|+|+++.|....
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af-G~~V~-~~~~~~~~~~~~~-~~------~~~~~l~e~l~~--aDvvv~~lPlt~~ 203 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW-GFPLR-CWSRSRKSWPGVQ-SF------AGREELSAFLSQ--TRVLINLLPNTPE 203 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCCCCCCCce-ee------cccccHHHHHhc--CCEEEECCCCCHH
Confidence 35899999999999999999876 78877 5677543221110 01 124689999986 8999999997654
No 239
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.48 E-value=0.0074 Score=55.87 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=50.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.++||||.|.||+..++.++ --+++|. .+|+.+. ....++.+. .|-+++|+|+. .|+|++.+|-.
T Consensus 146 gktvGIiG~GrIG~avA~r~~-~Fgm~v~-y~~~~~~--~~~~~~~~~-----~y~~l~ell~~--sDii~l~~Plt 211 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLK-GFGMKVL-YYDRSPN--PEAEKELGA-----RYVDLDELLAE--SDIISLHCPLT 211 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCCEEE-EECCCCC--hHHHhhcCc-----eeccHHHHHHh--CCEEEEeCCCC
Confidence 358999999999999999998 4378876 6888754 223344432 35559999996 99999988864
No 240
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.48 E-value=0.021 Score=50.32 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=56.5
Q ss_pred EEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 11 FGIIGA-ADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 11 v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
|+|+|+ |..|+..++.|.+ ++++|.+++-... +..+.+.+ .|..--..-++|.+.|.+. .++|+|+++++...
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~-~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSDRAQQLQA-LGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH-- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHHHHHHHHH-TTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC--
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchhhhhhhhc-ccceEeecccCCHHHHHHHHcCCceEEeecCcch--
Confidence 689996 9999999999988 6899998885443 33444433 3432000013344444221 36999998888542
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
....+....++++|+++|++.++
T Consensus 77 -------------------~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 77 -------------------PSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred -------------------hhhhhhhhhHHHhhhccccceEE
Confidence 23445555555566555555544
No 241
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.47 E-value=0.0078 Score=55.30 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=48.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-.+|||||+|.||+..++.++.. +++++ ++|++... .+.. ..+.+++++++. .|+|++++|...
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af-G~~V~-~~~r~~~~-------~~~~---~~~~~l~ell~~--aDiv~~~lp~t~ 185 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF-GMNIY-AYTRSYVN-------DGIS---SIYMEPEDIMKK--SDFVLISLPLTD 185 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EECCCCcc-------cCcc---cccCCHHHHHhh--CCEEEECCCCCc
Confidence 46899999999999999888766 78877 67776321 1221 236799999985 899999999754
No 242
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.46 E-value=0.02 Score=54.30 Aligned_cols=75 Identities=15% Similarity=0.276 Sum_probs=54.5
Q ss_pred ceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
...||+||| +|.||...+..+++. +.+|. ++|++. .++.++++.. +|+|++|+|...
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-G~~V~-~~d~~~------------------~~~~~~~~~~--aDlVilavP~~~ 154 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-GYQVR-ILEQDD------------------WDRAEDILAD--AGMVIVSVPIHL 154 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-CCeEE-EeCCCc------------------chhHHHHHhc--CCEEEEeCcHHH
Confidence 457899999 999999999999876 56644 677642 1255666664 899999999998
Q ss_pred cHHHHHHHHHcC-CeEEEe
Q 018020 86 HVKWAISVAQKK-KHLLME 103 (362)
Q Consensus 86 h~~~~~~al~~g-k~V~~E 103 (362)
-.+++....... ..++++
T Consensus 155 ~~~~~~~l~~l~~~~iv~D 173 (374)
T PRK11199 155 TEEVIARLPPLPEDCILVD 173 (374)
T ss_pred HHHHHHHHhCCCCCcEEEE
Confidence 777776644422 235555
No 243
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.46 E-value=0.005 Score=58.29 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=48.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+|||||+|.+|+..++.++.. +++++ ++|+..... ..+ ..+.+++++++. .|+|++++|-
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~-G~~V~-~~Dp~~~~~-----~~~-----~~~~~l~ell~~--aDiV~lh~Pl 177 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL-GWKVL-VCDPPRQEA-----EGD-----GDFVSLERILEE--CDVISLHTPL 177 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC-CCEEE-EECCccccc-----ccC-----ccccCHHHHHhh--CCEEEEeCcC
Confidence 46799999999999999999877 78877 678753311 111 236799999985 9999999986
No 244
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.44 E-value=0.01 Score=54.91 Aligned_cols=79 Identities=23% Similarity=0.195 Sum_probs=48.7
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----C------CCcccCCHHHHhcCCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----P------DAKVYGSYEALLDDKDID 75 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~------~~~~~~~~~e~l~~~~~D 75 (362)
+.+|||+|||+|.+|..++..|.+. +.++. ++.++.. +++. +.|+. . .+.++++.++ + ..+|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-g~~V~-~~~r~~~--~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~~D 74 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-GFDVH-FLLRSDY--EAVR-ENGLQVDSVHGDFHLPPVQAYRSAED-M--PPCD 74 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-CCeEE-EEEeCCH--HHHH-hCCeEEEeCCCCeeecCceEEcchhh-c--CCCC
Confidence 3478999999999999999988776 56666 4445432 2222 22221 0 0122333332 2 3589
Q ss_pred EEEEcCCCcccHHHHHH
Q 018020 76 AVYLPLPTSMHVKWAIS 92 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~ 92 (362)
+|+++++.....+.+..
T Consensus 75 ~vilavK~~~~~~~~~~ 91 (313)
T PRK06249 75 WVLVGLKTTANALLAPL 91 (313)
T ss_pred EEEEEecCCChHhHHHH
Confidence 99999998766554433
No 245
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.43 E-value=0.014 Score=56.37 Aligned_cols=88 Identities=11% Similarity=0.174 Sum_probs=59.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+.-||.|||.|.+|...+..+++. +.+|+ ++|++++..... ...+ . ....+.+.++. +.|+|+.+.+....
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~-G~~V~-g~D~~~~~~~~~-~~~~---~-~~~~~~~~~~~--~~dlvV~s~gi~~~ 72 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQK-GVYVI-GVDKSLEALQSC-PYIH---E-RYLENAEEFPE--QVDLVVRSPGIKKE 72 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHC-CCEEE-EEeCCccccchh-HHHh---h-hhcCCcHHHhc--CCCEEEECCCCCCC
Confidence 346899999999999988888877 56655 577765433211 0000 0 11223333333 48999998877788
Q ss_pred HHHHHHHHHcCCeEEEe
Q 018020 87 VKWAISVAQKKKHLLME 103 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~E 103 (362)
.+.+.+|+++|.+|..+
T Consensus 73 ~~~l~~A~~~g~~vv~~ 89 (418)
T PRK00683 73 HPWVQAAIASHIPVVTD 89 (418)
T ss_pred cHHHHHHHHCCCcEEEH
Confidence 89999999999886654
No 246
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.40 E-value=0.025 Score=48.86 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=59.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCH-HHHhcCCCCcEEEEcCCCc-c
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSY-EALLDDKDIDAVYLPLPTS-M 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~-~e~l~~~~~D~V~i~~~~~-~ 85 (362)
-||.|||.|..|..-+..|.+. +.+|+ |++++. +..+.++++.++. ....++ .+.++ +.|+|+++|... .
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~-ga~Vt-Vvsp~~~~~l~~l~~~~~i~---~~~~~~~~~dl~--~~~lVi~at~d~~l 82 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA-GAQLR-VIAEELESELTLLAEQGGIT---WLARCFDADILE--GAFLVIAATDDEEL 82 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCEEE-EEcCCCCHHHHHHHHcCCEE---EEeCCCCHHHhC--CcEEEEECCCCHHH
Confidence 4899999999999989988876 67766 555543 3455566554442 111222 23344 499999999987 7
Q ss_pred cHHHHHHHHHcCCeEE
Q 018020 86 HVKWAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~~~~~al~~gk~V~ 101 (362)
...+...|-++|+.|-
T Consensus 83 n~~i~~~a~~~~ilvn 98 (205)
T TIGR01470 83 NRRVAHAARARGVPVN 98 (205)
T ss_pred HHHHHHHHHHcCCEEE
Confidence 7888888888888774
No 247
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.39 E-value=0.021 Score=54.41 Aligned_cols=81 Identities=10% Similarity=-0.018 Sum_probs=54.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
--+|+|+|+|.+|...+..++.. +++|+ ++|+++.++.. +...|. . ..+.++++. +.|+|+.+|.+..-.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~Vi-V~d~dp~r~~~-A~~~G~----~-v~~leeal~--~aDVVItaTG~~~vI 264 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVI-VTEVDPIRALE-AAMDGF----R-VMTMEEAAK--IGDIFITATGNKDVI 264 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEE-EEeCChhhHHH-HHhcCC----E-eCCHHHHHh--cCCEEEECCCCHHHH
Confidence 34899999999999999999877 78855 68888876543 333453 2 335677775 489999887653322
Q ss_pred H-HHHHHHHcCC
Q 018020 88 K-WAISVAQKKK 98 (362)
Q Consensus 88 ~-~~~~al~~gk 98 (362)
. ....+++.|.
T Consensus 265 ~~~~~~~mK~Ga 276 (406)
T TIGR00936 265 RGEHFENMKDGA 276 (406)
T ss_pred HHHHHhcCCCCc
Confidence 2 2334555554
No 248
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=96.38 E-value=0.036 Score=43.74 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=71.3
Q ss_pred eeEEEEEeccH----HHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAAD----IARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~----~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
--+|+++|+.. -+...+..|+++ +++|+= .|+.-+. .+-+|. ++|.|+.|+-. .+|+|.|.-++
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~-GY~ViP---VNP~~~~--~eiLG~----k~y~sL~dIpe--~IDiVdvFR~~ 83 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQK-GYRVIP---VNPKLAG--EEILGE----KVYPSLADIPE--PIDIVDVFRRS 83 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHC-CCEEEe---eCcccch--HHhcCc----hhhhcHHhCCC--CCcEEEEecCh
Confidence 34799999964 355667777777 788663 3332111 122453 69999999985 59999999999
Q ss_pred cccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 84 SMHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 84 ~~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
..-.+++.++++.| |-++.+ +-..+.+ +. +.++++|+.
T Consensus 84 e~~~~i~~eal~~~~kv~W~Q-lGi~n~e-a~---~~~~~aG~~ 122 (140)
T COG1832 84 EAAPEVAREALEKGAKVVWLQ-LGIRNEE-AA---EKARDAGLD 122 (140)
T ss_pred hhhHHHHHHHHhhCCCeEEEe-cCcCCHH-HH---HHHHHhCcH
Confidence 99999999999999 666676 3334443 43 455666663
No 249
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.37 E-value=0.013 Score=48.83 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=43.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|||+|||+ |..|+..+....+. +.++++|+ |++.+...+....=+..++--.++..+.|. +.|+||.+-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAiv-Rn~~K~~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIV-RNASKLAARQGVTILQKDIFDLTSLASDLA--GHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-CCeeEEEE-eChHhccccccceeecccccChhhhHhhhc--CCceEEEecc
Confidence 68999997 78899998888766 78999888 777776543111001111111122234444 5999997643
No 250
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.36 E-value=0.0069 Score=55.97 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=47.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.+|+..++.++.. +++|+ .+|+.... ...+. -+.+++++|+. .|+|++++|-.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f-gm~V~-~~d~~~~~-----~~~~~-----~~~~l~ell~~--sDvv~lh~Plt 207 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF-GAKVV-YYSTSGKN-----KNEEY-----ERVSLEELLKT--SDIISIHAPLN 207 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc-CCEEE-EECCCccc-----cccCc-----eeecHHHHhhc--CCEEEEeCCCC
Confidence 46899999999999999998866 78877 57875321 11122 25699999996 89999998854
No 251
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.34 E-value=0.027 Score=48.77 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=66.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc-CCHHHHhcCCCCcEEEEcCCCc-
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY-GSYEALLDDKDIDAVYLPLPTS- 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~e~l~~~~~D~V~i~~~~~- 84 (362)
+.-+|.|||.|..|..-++.+.+. +..++.+.+...+..+.+.++.++. +. ..++.-.. .++++|+++|++.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~-ga~v~Vvs~~~~~el~~~~~~~~i~----~~~~~~~~~~~-~~~~lviaAt~d~~ 84 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKA-GADVTVVSPEFEPELKALIEEGKIK----WIEREFDAEDL-DDAFLVIAATDDEE 84 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCEEEEEcCCccHHHHHHHHhcCcc----hhhcccChhhh-cCceEEEEeCCCHH
Confidence 345899999999999999999877 6777766665556677777777643 22 22222111 2399999999995
Q ss_pred ccHHHHHHHHHcCCeEE-EeCCC
Q 018020 85 MHVKWAISVAQKKKHLL-MEKPM 106 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~-~EKP~ 106 (362)
.-..+...|-++++.|- +++|-
T Consensus 85 ln~~i~~~a~~~~i~vNv~D~p~ 107 (210)
T COG1648 85 LNERIAKAARERRILVNVVDDPE 107 (210)
T ss_pred HHHHHHHHHHHhCCceeccCCcc
Confidence 56677777778888776 56664
No 252
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.33 E-value=0.01 Score=58.94 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=49.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.+|||||+|.||+..++.++.. +++++ ++|+.... ..+.+++. ...++++|+++. .|+|++++|..
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~-~~d~~~~~--~~~~~~g~----~~~~~l~ell~~--aDvV~l~lPlt 204 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-GMKVL-AYDPYISP--ERAEQLGV----ELVDDLDELLAR--ADFITVHTPLT 204 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEE-EECCCCCh--hHHHhcCC----EEcCCHHHHHhh--CCEEEEccCCC
Confidence 5799999999999999999876 78876 57774221 11234453 345789999986 89999999954
No 253
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.33 E-value=0.034 Score=51.33 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=45.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
++||+|||+|.+|...+..+...+-.+|+ ++|+++++++..+.++ +........+|+++ +. +.|+|+++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~-L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~--~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IA--GSDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEE-EEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HC--CCCEEEEC
Confidence 37999999999999888887665323544 7899887665433221 11111122466755 44 48999987
Q ss_pred C
Q 018020 81 L 81 (362)
Q Consensus 81 ~ 81 (362)
.
T Consensus 78 ~ 78 (307)
T PRK06223 78 A 78 (307)
T ss_pred C
Confidence 5
No 254
>PLN02928 oxidoreductase family protein
Probab=96.33 E-value=0.0091 Score=56.01 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=48.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--------CCcccCCHHHHhcCCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--------DAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~e~l~~~~~D~V~i 79 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++...... ..++++. ...-+.++++++.. .|+|++
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af-G~~V~-~~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl 232 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF-GVKLL-ATRRSWTSEPE--DGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVL 232 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-CCEEE-EECCCCChhhh--hhhccccccccccccccCcccCHHHHHhh--CCEEEE
Confidence 35899999999999999999877 78877 57876322111 1100000 00135799999986 899999
Q ss_pred cCCCc
Q 018020 80 PLPTS 84 (362)
Q Consensus 80 ~~~~~ 84 (362)
++|-.
T Consensus 233 ~lPlt 237 (347)
T PLN02928 233 CCTLT 237 (347)
T ss_pred CCCCC
Confidence 99854
No 255
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.33 E-value=0.018 Score=55.68 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=49.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
--+|+|||+|.+|+..+..++.. +++|+ ++++++.++.... ..|. . +.+++++++. .|+|++++.+
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~-Ga~Vi-V~e~dp~~a~~A~-~~G~----~-~~~leell~~--ADIVI~atGt 319 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGF-GARVV-VTEIDPICALQAA-MEGY----Q-VVTLEDVVET--ADIFVTATGN 319 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCchhHHHHH-hcCc----e-eccHHHHHhc--CCEEEECCCc
Confidence 35799999999999999999877 67755 7888876654332 2453 2 4578998875 9999998653
No 256
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.32 E-value=0.017 Score=54.15 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=51.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-------------CCcccCCHHHHhcCCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-------------DAKVYGSYEALLDDKDI 74 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~e~l~~~~~ 74 (362)
++||+|||+|.||..++..+.+. +.+|. ++|+++. .+.+.+ .|+.. .....++. +.+. ++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~-G~~V~-~~~r~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA-GADVT-LIGRARI-GDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALA--TA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc-CCcEE-EEecHHH-HHHHHh-cCceeecCCCcceecccceeEeccCh-hhcc--CC
Confidence 37899999999999999999877 56666 5677643 344332 33210 01123344 3333 59
Q ss_pred cEEEEcCCCcccHHHHHHHH
Q 018020 75 DAVYLPLPTSMHVKWAISVA 94 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al 94 (362)
|+|++++++....+.+....
T Consensus 75 D~vil~vk~~~~~~~~~~l~ 94 (341)
T PRK08229 75 DLVLVTVKSAATADAAAALA 94 (341)
T ss_pred CEEEEEecCcchHHHHHHHH
Confidence 99999999887666555443
No 257
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.025 Score=53.16 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=86.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~~~ 85 (362)
|||.|||.|..-+..+..+.+.|...-+.++..|+-.+. -...-+++ .. ++.++++ .+.++|+++|.-..++
T Consensus 1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G~a~-~~~~~~~~--~~--~~~~~lv~fA~~~~idl~vVGPE~pL 75 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTAL-EAYLVNIE--ID--TDHEALVAFAKEKNVDLVVVGPEAPL 75 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCccch-hhhhccCc--cc--cCHHHHHHHHHHcCCCEEEECCcHHH
Confidence 689999999765566666777777777778877765443 11222322 11 4566554 5678999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHH-HHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVI-LNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l-~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
-.-++...-++|.+||=-+--+.-+|..+.. .++.+++|++ ......|. ....++..|
T Consensus 76 ~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IP--ta~y~~f~-~~e~a~ayi 134 (428)
T COG0151 76 VAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIP--TAEYEVFT-DPEEAKAYI 134 (428)
T ss_pred hhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCC--cccccccC-CHHHHHHHH
Confidence 9999999999999998533333333433333 3456778888 33334455 677788877
No 258
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.31 E-value=0.027 Score=53.89 Aligned_cols=82 Identities=10% Similarity=0.007 Sum_probs=57.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-+|+|+|+|.+|...+..++.. +++++ ++|+++.++. .+..+|.. ..+.++.+. +.|+|+.+|.+..-..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~-Ga~Vi-V~d~d~~R~~-~A~~~G~~-----~~~~~e~v~--~aDVVI~atG~~~~i~ 272 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ-GARVI-VTEVDPICAL-QAAMEGYE-----VMTMEEAVK--EGDIFVTTTGNKDIIT 272 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEE-EEECChhhHH-HHHhcCCE-----EccHHHHHc--CCCEEEECCCCHHHHH
Confidence 4899999999999999999877 67755 6899988765 45667742 224567765 4899999887654333
Q ss_pred HH-HHHHHcCCeE
Q 018020 89 WA-ISVAQKKKHL 100 (362)
Q Consensus 89 ~~-~~al~~gk~V 100 (362)
.. ..+++.|.-+
T Consensus 273 ~~~l~~mk~Ggil 285 (413)
T cd00401 273 GEHFEQMKDGAIV 285 (413)
T ss_pred HHHHhcCCCCcEE
Confidence 32 5556666443
No 259
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.31 E-value=0.024 Score=49.34 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=28.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
+..||+|||+|.+|...+..|.+. ++.-+.++|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 356899999999999999999877 55545577776
No 260
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=96.31 E-value=0.036 Score=50.70 Aligned_cols=135 Identities=17% Similarity=0.221 Sum_probs=84.7
Q ss_pred eEEEEEeccHHHHHHHHHH---hcC------C-------------CcEEEEEEcCCHHHH-----HHHHHHcC-------
Q 018020 9 IRFGIIGAADIARKLSRAI---TLA------P-------------NAVLSAVASRSLEKA-----TNFAKANN------- 54 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~---~~~------~-------------~~~vv~v~d~~~~~~-----~~~~~~~~------- 54 (362)
+||+|+|-|+-+..+++.+ ++. | +.|+|+.+|.+..+. +++-..-|
T Consensus 1 irvai~GvGncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~~ 80 (351)
T TIGR03450 1 VRVAIVGVGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIAD 80 (351)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeeec
Confidence 6999999999877654432 321 0 469999999876543 22222212
Q ss_pred CCC-CCc-----c------------------cCCHHHHhcCCCCcEEEEcCCCcc---cHHHHHHHHHcCCeEEEeCCCC
Q 018020 55 FPP-DAK-----V------------------YGSYEALLDDKDIDAVYLPLPTSM---HVKWAISVAQKKKHLLMEKPMA 107 (362)
Q Consensus 55 ~~~-~~~-----~------------------~~~~~e~l~~~~~D~V~i~~~~~~---h~~~~~~al~~gk~V~~EKP~~ 107 (362)
+|+ ++. . ..|.-+.|.+.++|+++...|... -.-++.+||++|.+..---|..
T Consensus 81 vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN~~P~~ 160 (351)
T TIGR03450 81 VPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVF 160 (351)
T ss_pred cCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHHhcCCCEEEECCccchHHHHHHHHHHHHHcCCceEeccCcc
Confidence 110 000 0 114555678889999999998764 3567889999999888767732
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeeec----ccChhHHHHHHhh
Q 018020 108 LNVAEFDVILNACEENGVQLMDGTMW----VHNPRTAQMKEFV 146 (362)
Q Consensus 108 ~~~~~~~~l~~~a~~~~~~~~v~~~~----r~~p~~~~~k~~i 146 (362)
.....++.+.++++|+++. |--. --...-..|-+++
T Consensus 161 --ia~~p~~a~~f~e~glPi~-GDD~Ksq~GaTi~h~vLa~lf 200 (351)
T TIGR03450 161 --IASDPEWAKKFTDAGVPIV-GDDIKSQVGATITHRVLAKLF 200 (351)
T ss_pred --ccCCHHHHHHHHHCCCCEe-cccccccCCCchHHHHHHHHH
Confidence 2245578888899999875 3222 2233344555555
No 261
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.30 E-value=0.068 Score=51.55 Aligned_cols=116 Identities=14% Similarity=0.061 Sum_probs=77.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEc----------CCHHHHHHHHHHc-C-CC---C--CCcccCCHHHHh
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVAS----------RSLEKATNFAKAN-N-FP---P--DAKVYGSYEALL 69 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d----------~~~~~~~~~~~~~-~-~~---~--~~~~~~~~~e~l 69 (362)
+..||+|.|+|+.|...+..+.+. +++|++++| .+.+.+.+..++. + +. . +.. +.+.++++
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~ 308 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPW 308 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccc
Confidence 468999999999999999998876 799999999 6777666655443 1 21 0 111 23555666
Q ss_pred cCCCCcEEEEcCC-CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 70 DDKDIDAVYLPLP-TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 70 ~~~~~D~V~i~~~-~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+ .++|+++=|.. +..+.+-+....+.+..+++|--=.....++.+ ..+++|+.+.
T Consensus 309 ~-~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~---~L~~rGI~~v 364 (445)
T PRK09414 309 S-VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIE---VFLEAGVLFA 364 (445)
T ss_pred c-cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHH---HHHHCCcEEE
Confidence 5 47999997655 456777777777778889999622222233433 4466676654
No 262
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.30 E-value=0.014 Score=53.85 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=48.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CC---CCCcc-cCCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FP---PDAKV-YGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~---~~~~~-~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
|||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.++. .. ....+ ..++++ +. +.|+|+++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~--~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CK--GADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hC--CCCEEEEccCC
Confidence 4799999999999988888766444556699999887664333221 10 00111 245544 44 48999998876
Q ss_pred c
Q 018020 84 S 84 (362)
Q Consensus 84 ~ 84 (362)
.
T Consensus 78 ~ 78 (308)
T cd05292 78 N 78 (308)
T ss_pred C
Confidence 4
No 263
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.028 Score=55.25 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=58.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHHHHhcCCCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
-||.|+|+|..|...+..+.+. +.++. ++|++.....++.++.|+. ++. +..+.+. ++|+|+++.--...
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~-G~~V~-~~D~~~~~~~~~l~~~gi~----~~~~~~~~~~~~--~~d~vV~Spgi~~~ 87 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL-GCDVV-VADDNETARHKLIEVTGVA----DISTAEASDQLD--SFSLVVTSPGWRPD 87 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-CCEEE-EECCChHHHHHHHHhcCcE----EEeCCCchhHhc--CCCEEEeCCCCCCC
Confidence 4799999999999888888877 56644 7888766555555566763 332 2234444 48988876544344
Q ss_pred HHHHHHHHHcCCeEEE
Q 018020 87 VKWAISVAQKKKHLLM 102 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~ 102 (362)
.+.+.+|.++|.+|+-
T Consensus 88 ~p~~~~a~~~gi~v~~ 103 (473)
T PRK00141 88 SPLLVDAQSQGLEVIG 103 (473)
T ss_pred CHHHHHHHHCCCceee
Confidence 4667788889988874
No 264
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.26 E-value=0.011 Score=54.60 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=47.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC----CC--CCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN----FP--PDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~----~~--~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+.||+|||+|.+|...+..+...+-..-+.++|+++++++..+.++. +. ..+....|+++ ++ +.|+|+|+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~--~adivvita 79 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TA--NSKVVIVTA 79 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hC--CCCEEEECC
Confidence 57999999999999888777655544445589998876655444321 11 12233468887 44 499999953
No 265
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.26 E-value=0.0071 Score=56.73 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=77.4
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcE---EEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAV---LSAVASRSLEKATNFAKANNFPPDAKVYG--SYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~---vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~e~l~~~~~D~V~i~~~ 82 (362)
+||||||+ |..|...++.+..+|++. ++.+.+. ...... -.++- ....+++ +.++ +. ++|+|+.++|
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~--~sg~~~-~~f~g-~~~~v~~~~~~~~-~~--~~Divf~a~~ 74 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS--QAGGAA-PSFGG-KEGTLQDAFDIDA-LK--KLDIIITCQG 74 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch--hhCCcc-cccCC-CcceEEecCChhH-hc--CCCEEEECCC
Confidence 78999997 888999999777788887 7764332 112221 11211 1112332 2233 33 5999999999
Q ss_pred CcccHHHHHHHHHcCCe-EEEeC----------CCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCC
Q 018020 83 TSMHVKWAISVAQKKKH-LLMEK----------PMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQR 151 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~-V~~EK----------P~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~ 151 (362)
.....+++.++.++|.. +.++- |+....--.+.|.. ..+.|.++..+-+.-=......++-+. +.+.
T Consensus 75 ~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~~~~g~~iIanPnC~tt~~~laL~PL~-~~~~ 152 (369)
T PRK06598 75 GDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-ALANGVKTFVGGNCTVSLMLMALGGLF-KNDL 152 (369)
T ss_pred HHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-hhhcCCCEEEcCChHHHHHHHHHHHHH-hcCC
Confidence 99999999999999974 44432 33222222223333 334564444333332233444566676 5444
Q ss_pred c
Q 018020 152 F 152 (362)
Q Consensus 152 i 152 (362)
|
T Consensus 153 i 153 (369)
T PRK06598 153 V 153 (369)
T ss_pred c
Confidence 4
No 266
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=96.25 E-value=0.02 Score=55.72 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=51.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC---HHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGS---YEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~e~l~~~~~D~V~i~~~ 82 (362)
.-|+.|||+|..|...+..+++.| +++++|++|.++... ..-.|+ .++.+ +.+++...++|-|+++.|
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~---~~i~g~----pVlg~~~~l~~~i~~~~id~ViIa~p 197 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDR---VEVAGL----PVLGKLDDLVELVRAHRVDEVIIALP 197 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCcccc---cccCCC----cccCCHHHHHHHHHhCCCCEEEEecC
Confidence 357999999999999999998765 589999998765432 122343 35544 455666678999999887
Q ss_pred Ccc
Q 018020 83 TSM 85 (362)
Q Consensus 83 ~~~ 85 (362)
...
T Consensus 198 ~~~ 200 (445)
T TIGR03025 198 LSE 200 (445)
T ss_pred ccc
Confidence 654
No 267
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.25 E-value=0.011 Score=56.88 Aligned_cols=64 Identities=27% Similarity=0.297 Sum_probs=48.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.+|+..++.++.. +++|+ .+|+.+.. ...+ +....+++|+++. .|+|++.+|-.
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~f-Gm~V~-~~d~~~~~-----~~~~----~~~~~~l~ell~~--sDiVslh~Plt 214 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESL-GMRVY-FYDIEDKL-----PLGN----ARQVGSLEELLAQ--SDVVSLHVPET 214 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EECCCccc-----ccCC----ceecCCHHHHHhh--CCEEEEcCCCC
Confidence 35899999999999999999877 78877 57775321 1111 2345699999986 89999998854
No 268
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.23 E-value=0.017 Score=48.63 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=49.2
Q ss_pred EEEEEeccHH--HHHHHHHHhcCCC--cEEEEEEcCCHHHHH-------HHHHHcCCCCCCcccCCHHHHhcCCCCcEEE
Q 018020 10 RFGIIGAADI--ARKLSRAITLAPN--AVLSAVASRSLEKAT-------NFAKANNFPPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 10 ~v~iiG~G~~--g~~~~~~~~~~~~--~~vv~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
||.|||+|+. .......+...+. ..-+.++|++++|++ .+.++.+.+..+...+|.+|.|++ .|+|+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g--ADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG--ADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT--ESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC--CCEEE
Confidence 7999999985 3334444444443 223559999998865 445666765555668999999996 99999
Q ss_pred EcCCCcc
Q 018020 79 LPLPTSM 85 (362)
Q Consensus 79 i~~~~~~ 85 (362)
+......
T Consensus 79 ~~irvGg 85 (183)
T PF02056_consen 79 NQIRVGG 85 (183)
T ss_dssp E---TTH
T ss_pred EEeeecc
Confidence 9877653
No 269
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.22 E-value=0.12 Score=47.72 Aligned_cols=83 Identities=18% Similarity=0.126 Sum_probs=56.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKW 89 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~ 89 (362)
+++|+|+|.+|...+..++.. ++..+.++|+++++++.. ..+. +++ .++- ....+|+|+-++......+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a-~~~~------~i~-~~~~-~~~g~Dvvid~~G~~~~~~~ 216 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGA-TGYE------VLD-PEKD-PRRDYRAIYDASGDPSLIDT 216 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhh-hhcc------ccC-hhhc-cCCCCCEEEECCCCHHHHHH
Confidence 689999999999888877766 677677788888776543 3332 121 1211 22368999999998766666
Q ss_pred HHHHHHcC-CeEEE
Q 018020 90 AISVAQKK-KHLLM 102 (362)
Q Consensus 90 ~~~al~~g-k~V~~ 102 (362)
+.++++.| +-|++
T Consensus 217 ~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 217 LVRRLAKGGEIVLA 230 (308)
T ss_pred HHHhhhcCcEEEEE
Confidence 77777666 44544
No 270
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=96.19 E-value=0.034 Score=53.04 Aligned_cols=98 Identities=20% Similarity=0.159 Sum_probs=64.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcCCH-HHHHHHHH---HcC-CCCC---------------CcccC--
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--PNAVLSAVASRSL-EKATNFAK---ANN-FPPD---------------AKVYG-- 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~~~-~~~~~~~~---~~~-~~~~---------------~~~~~-- 63 (362)
++||||-|+|.||+..++.+... ++++||+|=|... +.+..+-+ -+| ++.. +.++.
T Consensus 75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~ 154 (442)
T PLN02237 75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNR 154 (442)
T ss_pred eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcC
Confidence 58999999999999888876533 6799999988542 33332211 012 1000 11111
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++.++ ..+.++|+|+-||......+.+...+++| |-|++=-|
T Consensus 155 dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP 198 (442)
T PLN02237 155 DPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 198 (442)
T ss_pred CchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCC
Confidence 22222 22247999999999999999999999999 66665444
No 271
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.19 E-value=0.011 Score=47.89 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=47.8
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-----CCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-----FPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|||+|||+ |..|...+..+...+-..-+.++|+++++++..+.++. .+....+..+..+.++ +.|+|+++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALK--DADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGT--TESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccc--cccEEEEecc
Confidence 68999999 99999988888766544435599999887776554431 0011233333344444 4999999754
Q ss_pred C
Q 018020 83 T 83 (362)
Q Consensus 83 ~ 83 (362)
.
T Consensus 79 ~ 79 (141)
T PF00056_consen 79 V 79 (141)
T ss_dssp T
T ss_pred c
Confidence 3
No 272
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.15 E-value=0.019 Score=53.31 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=45.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHH-------HHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFA-------KANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
++.||+|||+|.+|...+..+...+-.+ +.++|+++++++..+ ...+.+..+....|+++ ++ +.|+|++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l~--~aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED-IA--GSDVVIV 80 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH-hC--CCCEEEE
Confidence 5679999999999998777665443246 669999887543111 11222212333478864 44 4999999
Q ss_pred cC
Q 018020 80 PL 81 (362)
Q Consensus 80 ~~ 81 (362)
+.
T Consensus 81 ta 82 (321)
T PTZ00082 81 TA 82 (321)
T ss_pred CC
Confidence 65
No 273
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.14 E-value=0.012 Score=54.07 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=50.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
--+|||+|+|.||+..+..|..- + ..+.-+.|++.+.+. +.+++ .-+.|+++++.. .|+|+|+.|-..+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~F-g-~~i~y~~r~~~~~~~-~~~~~-----~~~~d~~~~~~~--sD~ivv~~pLt~~ 230 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPF-G-CVILYHSRTQLPPEE-AYEYY-----AEFVDIEELLAN--SDVIVVNCPLTKE 230 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhc-c-ceeeeecccCCchhh-HHHhc-----ccccCHHHHHhh--CCEEEEecCCCHH
Confidence 35899999999999999999885 5 445466676554443 33443 127799999986 9999999987543
No 274
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.12 E-value=0.02 Score=52.90 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=49.5
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--C---CCCCcc-cCCHHHHhcCCCCcEEEEcCCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--F---PPDAKV-YGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~---~~~~~~-~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
||+|||+|.+|...+..+...+-..-+.++|+++++++..+.++. . +..+.. ..++++ +. +.|+|++++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~--~aDIVIitag~ 78 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CK--DADIVVITAGA 78 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hC--CCCEEEEccCC
Confidence 799999999999988888766434234589999988887766641 0 011122 355555 44 59999998876
Q ss_pred c
Q 018020 84 S 84 (362)
Q Consensus 84 ~ 84 (362)
.
T Consensus 79 ~ 79 (306)
T cd05291 79 P 79 (306)
T ss_pred C
Confidence 4
No 275
>PRK08223 hypothetical protein; Validated
Probab=96.11 E-value=0.051 Score=49.19 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=28.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
+.-||+|||+|..|...+..|... ++.=+.++|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence 456899999999999999999877 554555777643
No 276
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.11 E-value=0.0066 Score=56.77 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred EEEEEec-cHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCCCcc
Q 018020 10 RFGIIGA-ADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~~~ 85 (362)
||+|||+ |..|...++.|.+ +|.++++.++.. ....+.+. ..+.. ..+.+++ +.++ ++|+|+.++|...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-~~~g~~~~-~~~~~---~~~~~~~~~~~~--~~D~v~~a~g~~~ 73 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-RSAGRKVT-FKGKE---LEVNEAKIESFE--GIDIALFSAGGSV 73 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-ccCCCeee-eCCee---EEEEeCChHHhc--CCCEEEECCCHHH
Confidence 6899995 8889999999977 788888766543 22222222 11211 2233322 2233 6999999999999
Q ss_pred cHHHHHHHHHcCCeEE
Q 018020 86 HVKWAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~~~~~al~~gk~V~ 101 (362)
..+++.+++++|..|+
T Consensus 74 s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 74 SKEFAPKAAKCGAIVI 89 (339)
T ss_pred HHHHHHHHHHCCCEEE
Confidence 9999999999998544
No 277
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.10 E-value=0.016 Score=53.58 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=49.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--CC--CCCccc-CCHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--FP--PDAKVY-GSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~~--~~~~~~-~~~~e~l~~~~~D~V~i~~ 81 (362)
+..||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.++. .+ ..+.+. +++++ ++ +.|+|+++.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~--~adivIita 81 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CK--DADLVVITA 81 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hC--CCCEEEEec
Confidence 457999999999999888887766555445599998887766655442 10 112333 45555 44 499999964
Q ss_pred C
Q 018020 82 P 82 (362)
Q Consensus 82 ~ 82 (362)
-
T Consensus 82 g 82 (315)
T PRK00066 82 G 82 (315)
T ss_pred C
Confidence 4
No 278
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.08 E-value=0.085 Score=52.99 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=75.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCH--HHHhcC---CCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY--EALLDD---KDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~e~l~~---~~~D~V~i~~~~ 83 (362)
=+|.|+|+|.+|+..++.+++. +.+++ +.|.|+++.+.+.+ .|.+ .++.|. ++.|++ .+.|+|++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g~~vv-vId~d~~~~~~~~~-~g~~---~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-GIPLV-VIETSRTRVDELRE-RGIR---AVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-CCCEE-EEECCHHHHHHHHH-CCCe---EEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 4789999999999999999876 56655 77899999888764 5654 233332 233432 478999999998
Q ss_pred cccHHHHHHHHHc---CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 84 SMHVKWAISVAQK---KKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 84 ~~h~~~~~~al~~---gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
+.....+..++++ .+++++ -+.+.++.+.+ ++.|....+ +|.....+++.
T Consensus 492 ~~~~~~iv~~~~~~~~~~~iia---r~~~~~~~~~l----~~~Gad~vv------~p~~~~a~~i~ 544 (558)
T PRK10669 492 GYEAGEIVASAREKRPDIEIIA---RAHYDDEVAYI----TERGANQVV------MGEREIARTML 544 (558)
T ss_pred hHHHHHHHHHHHHHCCCCeEEE---EECCHHHHHHH----HHcCCCEEE------ChHHHHHHHHH
Confidence 7665433333322 256665 24455555444 456665544 66665554443
No 279
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.06 E-value=0.028 Score=52.16 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=46.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+++||+|||+|.+|...+..+...+-.+ +.++|+++++++..+-+ .+....+...++++ .+. +.|+|++
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~--~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIK--DSDVVVI 79 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhC--CCCEEEE
Confidence 5679999999999998777766553356 66999987654432221 11111222346777 444 4899999
Q ss_pred cC
Q 018020 80 PL 81 (362)
Q Consensus 80 ~~ 81 (362)
+.
T Consensus 80 ta 81 (319)
T PTZ00117 80 TA 81 (319)
T ss_pred CC
Confidence 87
No 280
>PRK15076 alpha-galactosidase; Provisional
Probab=96.05 E-value=0.024 Score=54.73 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=67.8
Q ss_pred eEEEEEeccHHHHH--HHHHH---hcCCCcEEEEEEcCCHHHHHH-------HHHHcCCCCCCcccCCHHHHhcCCCCcE
Q 018020 9 IRFGIIGAADIARK--LSRAI---TLAPNAVLSAVASRSLEKATN-------FAKANNFPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 9 ~~v~iiG~G~~g~~--~~~~~---~~~~~~~vv~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
+||+|||+|++|.. ++..+ ...++.+|+ ++|+++++++. ..+..+.+..+...+|..+.+++ .|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evv-LvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d--ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIA-LMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG--ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC--CCE
Confidence 68999999998753 33344 334455655 99999987663 22223332234456788888886 899
Q ss_pred EEEcCCCc-ccH---HHHHHHHHcCCe-EEEeC--C-----CCCCHHHHHHHHHHHHHcC
Q 018020 77 VYLPLPTS-MHV---KWAISVAQKKKH-LLMEK--P-----MALNVAEFDVILNACEENG 124 (362)
Q Consensus 77 V~i~~~~~-~h~---~~~~~al~~gk~-V~~EK--P-----~~~~~~~~~~l~~~a~~~~ 124 (362)
|+++.... .+. .-.+-.++.|.- -..|- | .-.|....+++.+..++..
T Consensus 79 Vv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~ 138 (431)
T PRK15076 79 VINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC 138 (431)
T ss_pred EeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC
Confidence 99987765 331 223446677743 11133 1 2335666666666666654
No 281
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.04 E-value=0.14 Score=46.71 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=86.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--CCcccCCHHH---Hh----cCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--DAKVYGSYEA---LL----DDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~e---~l----~~~~~D~V~i 79 (362)
-||.|+|+|.+|-.....++...-.+|+ +.|..++|++. |+++|... ......+.++ ++ .+..+|+++-
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~~VV-i~d~~~~Rle~-Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGASDVV-ITDLVANRLEL-AKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCcEE-EeecCHHHHHH-HHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 5899999999999888888888545544 88998877664 55588531 0011122333 22 2356999999
Q ss_pred cCCCcccHHHHHHHHHcCCeE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCh-hHHHHHHhhcCCCCcc
Q 018020 80 PLPTSMHVKWAISVAQKKKHL-LMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNP-RTAQMKEFVSDPQRFG 153 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V-~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p-~~~~~k~~i~~~g~iG 153 (362)
||-...-.+.+..|++.|-++ +++ +....-+.--+.-..++..+ .| .+||.- .|...-++| ++|++-
T Consensus 249 CsG~~~~~~aai~a~r~gGt~vlvg--~g~~~~~fpi~~v~~kE~~~---~g-~fry~~~~y~~ai~li-~sGki~ 317 (354)
T KOG0024|consen 249 CSGAEVTIRAAIKATRSGGTVVLVG--MGAEEIQFPIIDVALKEVDL---RG-SFRYCNGDYPTAIELV-SSGKID 317 (354)
T ss_pred ccCchHHHHHHHHHhccCCEEEEec--cCCCccccChhhhhhheeee---ee-eeeeccccHHHHHHHH-HcCCcC
Confidence 999999999999999998553 333 11222222122223344222 22 346655 788889999 788773
No 282
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.02 E-value=0.044 Score=51.21 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=28.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
..||+|||+|..|...+..|.+. ++.-+.++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 56899999999999999999877 665566888864
No 283
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.023 Score=54.11 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=54.4
Q ss_pred ceeEEEEEeccHHHH--HHHHHHhc---CCCcEEEEEEcCCHHHHH-------HHHHHcCCCCCCcccCCHHHHhcCCCC
Q 018020 7 AAIRFGIIGAADIAR--KLSRAITL---APNAVLSAVASRSLEKAT-------NFAKANNFPPDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~--~~~~~~~~---~~~~~vv~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~e~l~~~~~ 74 (362)
+++||++||+|+... ...-.+.. .|..+ ++++|.+++|.+ ++.++.|.+-.+..++|.++.|++ .
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~e-l~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g--A 78 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRE-LALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG--A 78 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcce-EEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC--C
Confidence 479999999998643 23333433 34455 559999998765 456667776445678999999997 9
Q ss_pred cEEEEcCCCcc
Q 018020 75 DAVYLPLPTSM 85 (362)
Q Consensus 75 D~V~i~~~~~~ 85 (362)
|+|+.+-....
T Consensus 79 dfVi~~~rvG~ 89 (442)
T COG1486 79 DFVITQIRVGG 89 (442)
T ss_pred CEEEEEEeeCC
Confidence 99998766543
No 284
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.01 E-value=0.018 Score=57.30 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=49.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|+..... .+..++. ... +++|+++. .|+|++++|..
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-G~~V~-~~d~~~~~~--~~~~~g~----~~~-~l~ell~~--aDiV~l~lP~t 205 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-GMKVI-AYDPYISPE--RAAQLGV----ELV-SLDELLAR--ADFITLHTPLT 205 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EECCCCChh--HHHhcCC----EEE-cHHHHHhh--CCEEEEccCCC
Confidence 45799999999999999999876 78876 677753211 1234454 233 89999986 89999999964
No 285
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.00 E-value=0.048 Score=48.54 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=74.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHH---HHHcC--C---C---CCCcccCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNF---AKANN--F---P---PDAKVYGSY 65 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~---~~~~~--~---~---~~~~~~~~~ 65 (362)
+..||+|.|+|..|...+..|.+. +.+|++|+|. +.+.+..+ .++.+ + + ++.. +-+.
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~~ 114 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLEL-GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFEG 114 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeCC
Confidence 457999999999999999988877 7999999993 33333221 12222 0 0 0112 2366
Q ss_pred HHHhcCCCCcEEEEc-CCCcccHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 66 EALLDDKDIDAVYLP-LPTSMHVKWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 66 ~e~l~~~~~D~V~i~-~~~~~h~~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
++++.. ++|+.+=| +.+.-+.+-+.+..+.+..+++|- |++ . ++. +..+++|+.+..
T Consensus 115 ~~~~~~-~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t--~-~a~---~~L~~rGI~vvP 175 (254)
T cd05313 115 KKPWEV-PCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCT--A-EAI---EVFRQAGVLFAP 175 (254)
T ss_pred cchhcC-CCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCC--H-HHH---HHHHHCCcEEEC
Confidence 677765 79988864 556677777777777788889885 432 2 333 455666776643
No 286
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.98 E-value=0.029 Score=54.69 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=60.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc--CCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD--DKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~--~~~~D~V~i~~~~ 83 (362)
|+|.|+|+|.+|...+..|.+. +.+++ ++|+++++.+.+.+..+++ .++ .+.+.+.+ -.++|+|+++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g~~v~-vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-NNDVT-VIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEE-EEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 4799999999999999999876 67776 7789999888877655543 122 22232321 2469999999998
Q ss_pred cccHHHHHHHH-Hc-C-CeEEE
Q 018020 84 SMHVKWAISVA-QK-K-KHLLM 102 (362)
Q Consensus 84 ~~h~~~~~~al-~~-g-k~V~~ 102 (362)
...-..+...+ +. + .++++
T Consensus 76 ~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 76 DETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred hHHHHHHHHHHHHhcCCCeEEE
Confidence 76554443333 33 4 45655
No 287
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=95.95 E-value=0.017 Score=56.41 Aligned_cols=71 Identities=24% Similarity=0.449 Sum_probs=51.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC---HHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGS---YEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~e~l~~~~~D~V~i~~~ 82 (362)
.-|+.|||+|..|...++.+++.+ +++++|++|.++...... .|+ .++.+ +.++++..++|-|+|+.|
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~---~gv----pVlg~~~dl~~~i~~~~vd~ViIA~p 200 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTGV---RGV----PVLGKLDDLEELIREGEVDEVYIALP 200 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc---CCC----CccCCHHHHHHHHHhcCCCEEEEeeC
Confidence 357999999999999999987765 589999998765432211 344 35544 555666778999999988
Q ss_pred Ccc
Q 018020 83 TSM 85 (362)
Q Consensus 83 ~~~ 85 (362)
...
T Consensus 201 ~~~ 203 (451)
T TIGR03023 201 LAA 203 (451)
T ss_pred ccc
Confidence 754
No 288
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.90 E-value=0.047 Score=51.76 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=51.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~~~~~D~V~i~~~ 82 (362)
.-+|.|||+|.+|...+..++.. +++ |.++|+++++++.++..++..- ...+ .++.+.+. +.|+|+.+++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~-V~v~d~~~~~~~~l~~~~g~~v-~~~~~~~~~l~~~l~--~aDvVI~a~~ 239 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GAT-VTILDINIDRLRQLDAEFGGRI-HTRYSNAYEIEDAVK--RADLLIGAVL 239 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCe-EEEEECCHHHHHHHHHhcCcee-EeccCCHHHHHHHHc--cCCEEEEccc
Confidence 46799999999999999999888 577 5578999999888888776310 0012 23445555 5899998874
No 289
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.86 E-value=0.038 Score=55.91 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=70.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH--HHhcC---CCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE--ALLDD---KDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--e~l~~---~~~D~V~i~~~ 82 (362)
+.+|.|+|+|.+|+..++.+.+. +.+++ +.|.|+++.+.+. ++|.+ .+|.|.. ++|+. .+.|+|+++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vv-vID~d~~~v~~~~-~~g~~---v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-KMRIT-VLERDISAVNLMR-KYGYK---VYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-CCCEE-EEECCHHHHHHHH-hCCCe---EEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 46899999999999999998866 56666 7789999988774 46654 3443333 34432 57899999999
Q ss_pred CcccHHHHHHHHH-cC--CeEEEeCCCCCCHHHHHHHHH
Q 018020 83 TSMHVKWAISVAQ-KK--KHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 83 ~~~h~~~~~~al~-~g--k~V~~EKP~~~~~~~~~~l~~ 118 (362)
++.....+...++ .. .+|++ -+.|.++++++.+
T Consensus 474 d~~~n~~i~~~~r~~~p~~~Iia---Ra~~~~~~~~L~~ 509 (601)
T PRK03659 474 EPEDTMKIVELCQQHFPHLHILA---RARGRVEAHELLQ 509 (601)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEE---EeCCHHHHHHHHh
Confidence 9876655544443 32 46665 3567777655543
No 290
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=95.83 E-value=0.13 Score=50.23 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=42.4
Q ss_pred hcCCCCcEEEEcCCCcccHHHHHHHHHcC-----CeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKK-----KHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 69 l~~~~~D~V~i~~~~~~h~~~~~~al~~g-----k~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
++...--+.++++||..-..++...-+.| .-|++|||++.|++.|++|.+...+
T Consensus 105 l~~~~~~lfYLA~PP~~f~~i~~~L~~~~l~~~~~RiviEKPFG~Dl~SA~~Ln~~l~~ 163 (482)
T PRK12853 105 LGPGGNPVFYLAVPPSLFAPVVENLGAAGLLPEGRRVVLEKPFGHDLASARALNATLAK 163 (482)
T ss_pred hcCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 43323348889999988777777666664 4799999999999999999887776
No 291
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.83 E-value=0.022 Score=52.75 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=45.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-+|||||+|.+|+..++.++.. +++|++ +|+... . .. .-+.+++++|+. .|+|++++|-.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~-~~~~~~-~------~~-----~~~~~l~ell~~--sDiv~l~lPlt 208 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF-GMRVLI-GQLPGR-P------AR-----PDRLPLDELLPQ--VDALTLHCPLT 208 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEE-ECCCCC-c------cc-----ccccCHHHHHHh--CCEEEECCCCC
Confidence 4899999999999999999876 788774 566421 0 01 124589999986 89999999954
No 292
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=95.80 E-value=0.055 Score=52.91 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=49.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH---HHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE---ALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---e~l~~~~~D~V~i~~~ 82 (362)
.-|+.|||+|..|...+..+++.| +++++|++|.++. . +.+ +.++.+.+ +++...++|-|+|+.|
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~------~--g~~--VpvlG~~~dL~~~v~~~~IdeViIAip 212 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPKP------G--GVS--NDWAGNLQQLVEDAKAGKIHNVYIAMS 212 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCcc------c--cCC--CCcCCCHHHHHHHHHhCCCCEEEEeCC
Confidence 357999999999999999998876 5899999987641 1 221 12355544 4566678999998887
Q ss_pred Ccc
Q 018020 83 TSM 85 (362)
Q Consensus 83 ~~~ 85 (362)
...
T Consensus 213 ~~~ 215 (463)
T PRK10124 213 MCD 215 (463)
T ss_pred Ccc
Confidence 654
No 293
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.80 E-value=0.036 Score=51.07 Aligned_cols=71 Identities=13% Similarity=0.051 Sum_probs=45.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH-Hc------CCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK-AN------NFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~-~~------~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+||+|||+|.+|...+..+......+ +.++|++++.++..+- .+ ..........|+++ ++ +.|+|+|+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~-VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~--~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELAD-LVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TA--NSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCe-EEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hC--CCCEEEEcC
Confidence 58999999999998888776653336 5588886654442221 11 11112233578887 44 489999987
Q ss_pred CC
Q 018020 82 PT 83 (362)
Q Consensus 82 ~~ 83 (362)
+.
T Consensus 78 g~ 79 (305)
T TIGR01763 78 GL 79 (305)
T ss_pred CC
Confidence 63
No 294
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.80 E-value=0.046 Score=46.78 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=51.4
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--CCCcc--cCCHH---HHhcCCCCcEEEE
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--PDAKV--YGSYE---ALLDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--~~~~~--~~~~~---e~l~~~~~D~V~i 79 (362)
..++.|+|+ |.+|...+..+.+. +.+++ +++|+.++++.++++++-. ..... ..+.+ +.++ +.|+|+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~-l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~diVi~ 103 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-GARVV-LVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK--GADVVFA 103 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh--cCCEEEE
Confidence 468999995 99999888888765 46665 6689999988887765210 00111 23443 4454 5899999
Q ss_pred cCCCccc
Q 018020 80 PLPTSMH 86 (362)
Q Consensus 80 ~~~~~~h 86 (362)
+||....
T Consensus 104 at~~g~~ 110 (194)
T cd01078 104 AGAAGVE 110 (194)
T ss_pred CCCCCce
Confidence 9987665
No 295
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.79 E-value=0.021 Score=52.83 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=47.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.+|+..++.++.. +++|++ +|+... .... .-+.+++++|+. .|+|++++|-.
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f-g~~V~~-~~~~~~------~~~~-----~~~~~l~ell~~--sDiv~l~~Plt 208 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL-GMKVLY-AEHKGA------SVCR-----EGYTPFEEVLKQ--ADIVTLHCPLT 208 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-CCEEEE-ECCCcc------cccc-----cccCCHHHHHHh--CCEEEEcCCCC
Confidence 35899999999999999998876 788875 566421 1111 125699999996 99999999854
No 296
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=95.78 E-value=0.039 Score=51.27 Aligned_cols=99 Identities=19% Similarity=0.105 Sum_probs=68.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC----CCcEEEEEEcC--CHHHHHHHHH---HcCC-C---------------------
Q 018020 8 AIRFGIIGAADIARKLSRAITLA----PNAVLSAVASR--SLEKATNFAK---ANNF-P--------------------- 56 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~----~~~~vv~v~d~--~~~~~~~~~~---~~~~-~--------------------- 56 (362)
++||||-|+|.||+..++.+... ++++||+|-|+ +.+....+-+ -+|. +
T Consensus 3 ~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in 82 (361)
T PTZ00434 3 PIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN 82 (361)
T ss_pred ceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence 58999999999999888886543 57999999995 4443322211 0111 0
Q ss_pred -CCCccc---CCHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 57 -PDAKVY---GSYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 57 -~~~~~~---~~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+.+.++ .+++++ ..+.++|+|+=||--....+-+..=|++| |-|++--|.
T Consensus 83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~ 138 (361)
T PTZ00434 83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPA 138 (361)
T ss_pred CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCC
Confidence 011222 344444 23457999999999999888888899999 899997774
No 297
>PRK04148 hypothetical protein; Provisional
Probab=95.72 E-value=0.11 Score=41.30 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=63.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-CCcccCCHHHHhcCCCCcEEEEcCCCc-c
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-DAKVYGSYEALLDDKDIDAVYLPLPTS-M 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~e~l~~~~~D~V~i~~~~~-~ 85 (362)
..||..||+| .|...+..|.+. +.+|+ ..|.++++.+.+.+ .++.. -..+++---++-. +.|+|+-.-|+. .
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~-G~~Vi-aIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~--~a~liysirpp~el 90 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES-GFDVI-VIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYK--NAKLIYSIRPPRDL 90 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC-CCEEE-EEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHh--cCCEEEEeCCCHHH
Confidence 4789999999 577788888876 78877 57899987766544 33320 0012222223333 589999776665 5
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCH
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNV 110 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~ 110 (362)
|..++.-|-+-|..+++ ||++.+.
T Consensus 91 ~~~~~~la~~~~~~~~i-~~l~~e~ 114 (134)
T PRK04148 91 QPFILELAKKINVPLII-KPLSGEE 114 (134)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCCC
Confidence 66777777777877766 7887654
No 298
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.68 E-value=0.6 Score=43.45 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=77.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcE-EEEEEcCCHHHHHHHHHHcCCCCCCccc--CC--HHHH---hcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAV-LSAVASRSLEKATNFAKANNFPPDAKVY--GS--YEAL---LDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~-vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~--~~e~---l~~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...+..++.. +++ ++ +.++++++.+. ++++|.. .++ .+ .+++ .....+|+|+-+
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~-G~~~vi-~~~~~~~~~~~-~~~~ga~---~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARAL-GAEDVI-GVDPSPERLEL-AKALGAD---FVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEE-EECCCHHHHHH-HHHhCCC---EEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 4789999999999888888776 566 66 46777776654 5677753 122 11 2233 333469999999
Q ss_pred CCCcccHHHHHHHHHcCCeEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 81 LPTSMHVKWAISVAQKKKHLL-MEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~-~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
+........+..+++.+-.++ +--+-..+.. +....-.+++.+.-..... ...+.++-+++ .+|.+
T Consensus 239 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~----~~~~~~~~~~~i~g~~~~~-~~~~~~~~~~~-~~g~i 305 (339)
T cd08239 239 SGNTAARRLALEAVRPWGRLVLVGEGGELTIE----VSNDLIRKQRTLIGSWYFS-VPDMEECAEFL-ARHKL 305 (339)
T ss_pred CCCHHHHHHHHHHhhcCCEEEEEcCCCCcccC----cHHHHHhCCCEEEEEecCC-HHHHHHHHHHH-HcCCC
Confidence 988777677778887775544 3222111111 1111122444443222211 23566777777 66665
No 299
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.66 E-value=0.13 Score=44.33 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=28.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
+..||+|||+|.+|...+..+.+. ++.=+.++|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 457899999999999999999877 66434588887
No 300
>PLN02306 hydroxypyruvate reductase
Probab=95.65 E-value=0.039 Score=52.45 Aligned_cols=73 Identities=22% Similarity=0.195 Sum_probs=48.9
Q ss_pred eeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHHH-HHHHHHHcCC--------CCCCcccCCHHHHhcCCCCcEE
Q 018020 8 AIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEK-ATNFAKANNF--------PPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~-~~~~~~~~~~--------~~~~~~~~~~~e~l~~~~~D~V 77 (362)
--+|||||+|.+|+..++.+. .. +++|+ .+|+.... ...+...++. +.+...+.+++++|+. .|+|
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~f-Gm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV 240 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVI 240 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC-CCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEE
Confidence 358999999999999999875 45 78876 67876432 2222222321 0001224699999986 8999
Q ss_pred EEcCCCc
Q 018020 78 YLPLPTS 84 (362)
Q Consensus 78 ~i~~~~~ 84 (362)
++++|-.
T Consensus 241 ~lh~Plt 247 (386)
T PLN02306 241 SLHPVLD 247 (386)
T ss_pred EEeCCCC
Confidence 9988843
No 301
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.65 E-value=0.074 Score=45.87 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=55.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~~~ 85 (362)
.-+|.|||.|.+|...+..|.+. +.+|+ |++++. +....++.+..+. -.-..++ +.++ +.|+|+.+|.+..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~-ga~V~-VIs~~~~~~l~~l~~~~~i~---~~~~~~~~~~l~--~adlViaaT~d~e 82 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY-GAHIV-VISPELTENLVKLVEEGKIR---WKQKEFEPSDIV--DAFLVIAATNDPR 82 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEE-EEcCCCCHHHHHHHhCCCEE---EEecCCChhhcC--CceEEEEcCCCHH
Confidence 45899999999999888888876 46766 455543 3344555443221 0111222 1233 5899999999987
Q ss_pred cHHHHHHHHHcCCeEEE
Q 018020 86 HVKWAISVAQKKKHLLM 102 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~ 102 (362)
--..+....++++.|-+
T Consensus 83 lN~~i~~~a~~~~lvn~ 99 (202)
T PRK06718 83 VNEQVKEDLPENALFNV 99 (202)
T ss_pred HHHHHHHHHHhCCcEEE
Confidence 65555555577765543
No 302
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.64 E-value=0.067 Score=52.37 Aligned_cols=87 Identities=10% Similarity=0.060 Sum_probs=59.2
Q ss_pred eeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCccc-CCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVY-GSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~-~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..||.|||.|..|.. .++.|++. +.+|. +.|... +..+.+ ++.|+. ++ ....+.++ ++|+|+++.--+
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~-G~~V~-~~D~~~~~~~~~l-~~~gi~----~~~~~~~~~~~--~~d~vv~spgi~ 77 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNL-GYKVS-GSDLKESAVTQRL-LELGAI----IFIGHDAENIK--DADVVVYSSAIP 77 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhC-CCeEE-EECCCCChHHHHH-HHCCCE----EeCCCCHHHCC--CCCEEEECCCCC
Confidence 457999999999998 68888877 78866 577543 223333 344653 32 22334454 589888766555
Q ss_pred ccHHHHHHHHHcCCeEEEe
Q 018020 85 MHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~E 103 (362)
...+.+.+|.++|.+|+.|
T Consensus 78 ~~~~~~~~a~~~~i~i~~~ 96 (461)
T PRK00421 78 DDNPELVAARELGIPVVRR 96 (461)
T ss_pred CCCHHHHHHHHCCCcEEeH
Confidence 6667788889999999865
No 303
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.64 E-value=0.051 Score=51.72 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=28.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
+..||.|||+|..|...+..|... ++.-+.++|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~-Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAA-GVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 356899999999999999999877 55445577876
No 304
>PLN02494 adenosylhomocysteinase
Probab=95.60 E-value=0.063 Score=51.87 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=53.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc-H
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH-V 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h-~ 87 (362)
-+|+|+|+|.+|+..+..++.. +++|+ ++++++.++.. +...|.. +.+.++++.. .|+|+.++.+..- .
T Consensus 255 KtVvViGyG~IGr~vA~~aka~-Ga~VI-V~e~dp~r~~e-A~~~G~~-----vv~leEal~~--ADVVI~tTGt~~vI~ 324 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA-GARVI-VTEIDPICALQ-ALMEGYQ-----VLTLEDVVSE--ADIFVTTTGNKDIIM 324 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCchhhHH-HHhcCCe-----eccHHHHHhh--CCEEEECCCCccchH
Confidence 5799999999999999999877 77755 68888766443 3334432 2367888764 8999886665321 2
Q ss_pred HHHHHHHHcC
Q 018020 88 KWAISVAQKK 97 (362)
Q Consensus 88 ~~~~~al~~g 97 (362)
......++.|
T Consensus 325 ~e~L~~MK~G 334 (477)
T PLN02494 325 VDHMRKMKNN 334 (477)
T ss_pred HHHHhcCCCC
Confidence 3444455555
No 305
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.60 E-value=0.18 Score=44.71 Aligned_cols=79 Identities=10% Similarity=0.175 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 45 KATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
..++.++++|++--+.+ ..+.+.+.+ .+|++-|++.+..+.+++.++.+.||+|++-|+...++++....++...+
T Consensus 70 ~L~~~~~~~Gl~~~Tev~d~~~v~~~~e--~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~ 147 (250)
T PRK13397 70 YLHEVCQEFGLLSVSEIMSERQLEEAYD--YLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQD 147 (250)
T ss_pred HHHHHHHHcCCCEEEeeCCHHHHHHHHh--cCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35677889998611111 133444444 59999999999999999999999999999999999999999999999988
Q ss_pred cCC
Q 018020 123 NGV 125 (362)
Q Consensus 123 ~~~ 125 (362)
.|.
T Consensus 148 ~Gn 150 (250)
T PRK13397 148 TGK 150 (250)
T ss_pred cCC
Confidence 654
No 306
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.59 E-value=0.067 Score=54.34 Aligned_cols=102 Identities=12% Similarity=0.170 Sum_probs=68.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH--HHhc---CCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE--ALLD---DKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--e~l~---~~~~D~V~i~~~ 82 (362)
+-+|.|+|+|.+|+..++.+++. +.+++ +.|.|+++.+.+.+ +|.+ .+|.|.. ++|+ -.+.|+|+++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vv-vID~d~~~v~~~~~-~g~~---v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMT-VLDHDPDHIETLRK-FGMK---VFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEE-EEECCHHHHHHHHh-cCCe---EEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 46899999999999999999876 56666 66999999888754 5653 3443333 2343 257899999999
Q ss_pred CcccHHHHHHHHH-cC--CeEEEeCCCCCCHHHHHHHHH
Q 018020 83 TSMHVKWAISVAQ-KK--KHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 83 ~~~h~~~~~~al~-~g--k~V~~EKP~~~~~~~~~~l~~ 118 (362)
++.....+...++ .. .++++ -+.|.+++.++.+
T Consensus 474 d~~~n~~i~~~ar~~~p~~~iia---Ra~d~~~~~~L~~ 509 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPHLQIIA---RARDVDHYIRLRQ 509 (621)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEE---EECCHHHHHHHHH
Confidence 8765555544443 32 34554 3456666555533
No 307
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.59 E-value=0.35 Score=45.65 Aligned_cols=87 Identities=8% Similarity=0.079 Sum_probs=57.1
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHhcC-CCCcEEEEcCCCccc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALLDD-KDIDAVYLPLPTSMH 86 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~~-~~~D~V~i~~~~~~h 86 (362)
+|.|.|+|.+|...+..++.. +.+++++. .+.++...+++++|.. .+. .+.+++.+. ..+|+|+-++.....
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~-~~~~~~~~~~~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid~~g~~~~ 260 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAF-GLKVTVIS-SSSNKEDEAINRLGAD---SFLVSTDPEKMKAAIGTMDYIIDTVSAVHA 260 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEe-CCcchhhhHHHhCCCc---EEEcCCCHHHHHhhcCCCCEEEECCCCHHH
Confidence 688999999999888888777 67776554 4445556666778753 121 222222211 258999998886555
Q ss_pred HHHHHHHHHcCCeEE
Q 018020 87 VKWAISVAQKKKHLL 101 (362)
Q Consensus 87 ~~~~~~al~~gk~V~ 101 (362)
.+.+.++++.|-.+.
T Consensus 261 ~~~~~~~l~~~G~iv 275 (360)
T PLN02586 261 LGPLLGLLKVNGKLI 275 (360)
T ss_pred HHHHHHHhcCCcEEE
Confidence 666778887774443
No 308
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.59 E-value=0.54 Score=43.99 Aligned_cols=90 Identities=20% Similarity=0.147 Sum_probs=61.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--C--CHHHH---hcCCCCc-EEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--G--SYEAL---LDDKDID-AVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~e~---l~~~~~D-~V~i~ 80 (362)
-+|.|.|+|.+|...+..++.. +++.+.+.++++++.+. ++++|.. .++ . +.+++ +....+| +|+-+
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~-~~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~d~~v~d~ 236 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLAL-AKSLGAM---QTFNSREMSAPQIQSVLRELRFDQLILET 236 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHH-HHHcCCc---eEecCcccCHHHHHHHhcCCCCCeEEEEC
Confidence 4789999999999888888877 67755567788877664 5677742 111 1 22333 3334678 88888
Q ss_pred CCCcccHHHHHHHHHcCCe-EEEe
Q 018020 81 LPTSMHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~-V~~E 103 (362)
+....+...+.++++.|-. |++-
T Consensus 237 ~G~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 237 AGVPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCCHHHHHHHHHHhhcCCEEEEEc
Confidence 8887788888889988744 4443
No 309
>PLN02477 glutamate dehydrogenase
Probab=95.58 E-value=0.092 Score=50.19 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=71.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC----------HHHHHHHHHHcCCC---CCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS----------LEKATNFAKANNFP---PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~----------~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~ 73 (362)
+-.||+|.|+|..|+..+..|.+. +++|++|+|.+ .+.+.+..++.+.- ++.. .-+.++++.. +
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~-~i~~~e~l~~-~ 281 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEK-GGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGD-PIDPDDILVE-P 281 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccce-EecCccceec-c
Confidence 357999999999999999988776 79999999987 66665554444311 1111 2255677765 7
Q ss_pred CcEEEEc-CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 74 IDAVYLP-LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 74 ~D~V~i~-~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+|+.+=| +.+.-+.+-+.+ -+..+++|--=.....++.+ ..+++|+.+.
T Consensus 282 ~DvliP~Al~~~I~~~na~~---i~ak~I~egAN~p~t~ea~~---~L~~rGI~~~ 331 (410)
T PLN02477 282 CDVLIPAALGGVINKENAAD---VKAKFIVEAANHPTDPEADE---ILRKKGVVVL 331 (410)
T ss_pred ccEEeeccccccCCHhHHHH---cCCcEEEeCCCCCCCHHHHH---HHHHCCcEEE
Confidence 9988865 444455555544 26678888521112223433 3456676654
No 310
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.58 E-value=0.075 Score=43.74 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=44.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-++.++|.|..|+..+..++.. +++++ |++.+|-++-+... -|+ . ..+.++++.. .|+++-+|.+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~-Ga~V~-V~e~DPi~alqA~~-dGf----~-v~~~~~a~~~--adi~vtaTG~~ 89 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL-GARVT-VTEIDPIRALQAAM-DGF----E-VMTLEEALRD--ADIFVTATGNK 89 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT-T-EEE-EE-SSHHHHHHHHH-TT-----E-EE-HHHHTTT---SEEEE-SSSS
T ss_pred CEEEEeCCCcccHHHHHHHhhC-CCEEE-EEECChHHHHHhhh-cCc----E-ecCHHHHHhh--CCEEEECCCCc
Confidence 3789999999999999999988 67755 89999976654433 233 2 3478898875 89999888874
No 311
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=95.57 E-value=0.25 Score=43.95 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=54.3
Q ss_pred cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHH---cCCeEEEeCCCCCC
Q 018020 33 AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQ---KKKHLLMEKPMALN 109 (362)
Q Consensus 33 ~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~---~gk~V~~EKP~~~~ 109 (362)
.+|+ +++|++++++.+++++|+ ..+.+.+++++. .|+|+++++|..-.+++ ..++ .+.++++---.+.+
T Consensus 10 ~~I~-v~~R~~e~~~~l~~~~g~----~~~~~~~e~~~~--aDiIiLaVkP~~i~~vl-~~l~~~~~~~~~ivS~~agi~ 81 (245)
T TIGR00112 10 YDII-VINRSPEKLAALAKELGI----VASSDAQEAVKE--ADVVFLAVKPQDLEEVL-SELKSEKGKDKLLISIAAGVT 81 (245)
T ss_pred CeEE-EEcCCHHHHHHHHHHcCc----EEeCChHHHHhh--CCEEEEEeCHHHHHHHH-HHHhhhccCCCEEEEecCCCC
Confidence 4544 899999999999999885 467888888875 89999999965555544 3333 22234443344668
Q ss_pred HHHHHHHH
Q 018020 110 VAEFDVIL 117 (362)
Q Consensus 110 ~~~~~~l~ 117 (362)
+++.+++.
T Consensus 82 ~~~l~~~~ 89 (245)
T TIGR00112 82 LEKLSQLL 89 (245)
T ss_pred HHHHHHHc
Confidence 88887765
No 312
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.1 Score=50.93 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=61.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHH---HcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAK---ANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~---~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
+..+|.|+|+|.+|...+..|.+. +.+|+ ++|++. +..+...+ +.|+. ....+..++.+. ++|+|++++-
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~--~~d~vv~~~g 77 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL-GAKVI-LTDEKEEDQLKEALEELGELGIE--LVLGEYPEEFLE--GVDLVVVSPG 77 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCchHHHHHHHHHHHhcCCE--EEeCCcchhHhh--cCCEEEECCC
Confidence 357899999999999999999877 68866 566653 33332222 23432 111222334443 5999999888
Q ss_pred CcccHHHHHHHHHcCCeEEE
Q 018020 83 TSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~ 102 (362)
.....+.+..|-+.|++|+.
T Consensus 78 ~~~~~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 78 VPLDSPPVVQAHKKGIEVIG 97 (450)
T ss_pred CCCCCHHHHHHHHCCCcEEe
Confidence 77777788888889998874
No 313
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.55 E-value=0.34 Score=45.53 Aligned_cols=134 Identities=15% Similarity=0.208 Sum_probs=94.1
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC----------------C----CcccCCHHHHh
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP----------------D----AKVYGSYEALL 69 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~----------------~----~~~~~~~~e~l 69 (362)
+|.|+|+|..|...+..++++-..+ +|++.|...+.+.+.+.+.... + -.+|.+++++.
T Consensus 3 ~VLI~GtGPvAiQLAv~lk~~~~~~-vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 3 NVLIVGTGPVAIQLAVILKKHGNCR-VGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred ceEEEcCCHHHHHHHHHHHhccCce-eeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 6899999999988899998885444 7799998888887766653210 0 13567777776
Q ss_pred cCCCCcEEEEcCCCcccHHHHH----HHHHcCCeEEEeCCCCCCHHHHHHHHHHHH------------------------
Q 018020 70 DDKDIDAVYLPLPTSMHVKWAI----SVAQKKKHLLMEKPMALNVAEFDVILNACE------------------------ 121 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~~~----~al~~gk~V~~EKP~~~~~~~~~~l~~~a~------------------------ 121 (362)
.+ -|.+|.|+|.+.=..+.. +.|+.=|+|++=.|.--+-.-.+.++....
T Consensus 82 g~--WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~ 159 (429)
T PF10100_consen 82 GE--WDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPN 159 (429)
T ss_pred cc--ccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCCCcc
Confidence 64 899999999876544444 466666888876665444444444443322
Q ss_pred -----HcCCEEEEeeecccChhHHHHHHhh
Q 018020 122 -----ENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 122 -----~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
.-+.++.+|.+.--++.+.++++++
T Consensus 160 ~vlt~~vK~kiYigSt~~~s~~~~~l~~~~ 189 (429)
T PF10100_consen 160 RVLTTAVKKKIYIGSTHSNSPELDKLCRLL 189 (429)
T ss_pred eehhhhhhceEEEEeCCCCChHHHHHHHHH
Confidence 1135688898888899999999998
No 314
>PLN02602 lactate dehydrogenase
Probab=95.55 E-value=0.05 Score=50.99 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=46.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC----CCCCCccc--CCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN----FPPDAKVY--GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~----~~~~~~~~--~~~~e~l~~~~~D~V~i~~~ 82 (362)
.||+|||+|.+|...+..+...+-+.-+.++|++++.++..+.++. +.+.+.+. .++++ ++ +.|+|+|+.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~--daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TA--GSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hC--CCCEEEECCC
Confidence 7999999999999887777655444445589998876655444321 11112343 46666 44 4999999743
No 315
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.52 E-value=0.15 Score=45.34 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=81.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHHHHHcCC--C--C-----CCcccCCHHH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNFAKANNF--P--P-----DAKVYGSYEA 67 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~~~~~~~--~--~-----~~~~~~~~~e 67 (362)
+-.+|+|-|+|..|...+..|.+. +.+++++.|. +.+.+.+..++.+. . + +...+++-++
T Consensus 31 ~g~~v~IqGfG~VG~~~a~~l~~~-Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 109 (244)
T PF00208_consen 31 EGKRVAIQGFGNVGSHAARFLAEL-GAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE 109 (244)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHT-TEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence 458999999999999999999888 8999998664 33455555556553 1 0 1111122237
Q ss_pred HhcCCCCcEEEEcC-CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 68 LLDDKDIDAVYLPL-PTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 68 ~l~~~~~D~V~i~~-~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
+++. ++|+.+-|. ++.-+.+-+...+++|..++||=-=.....++.+ ..+++|+.+...+..
T Consensus 110 il~~-~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~---~L~~rGI~viPD~~a 172 (244)
T PF00208_consen 110 ILSV-DCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE---ILRERGILVIPDFLA 172 (244)
T ss_dssp GGTS-SSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH---HHHHTT-EEE-HHHH
T ss_pred cccc-cccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH---HHHHCCCEEEcchhh
Confidence 8875 899999764 6677888888788999999999622222244443 778889887765443
No 316
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.50 E-value=0.057 Score=45.42 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=58.3
Q ss_pred EEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCH---HHHhcCCCCcEEEEcCCCccc
Q 018020 11 FGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY---EALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 11 v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---~e~l~~~~~D~V~i~~~~~~h 86 (362)
|.|+|+ |.+|+..++.|.+.+ .+|++++ |++++.+. ..++..-.--+.+. .+.++ ++|+|+.+.++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~-R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV-RSPSKAED---SPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE-SSGGGHHH---CTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe-cCchhccc---ccccccceeeehhhhhhhhhhh--hcchhhhhhhhhcc
Confidence 689996 999999999998884 8999877 66666655 22221000012344 44455 59999988765433
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
+...++.+.++++++|++
T Consensus 74 ----------------------~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 74 ----------------------DVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTSS
T ss_pred ----------------------cccccccccccccccccc
Confidence 177778888888887763
No 317
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.44 E-value=0.1 Score=48.76 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=29.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
+.-||.|||+|..|...+..|... ++.-+.++|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 356899999999999999998877 664455888764
No 318
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.43 E-value=0.14 Score=46.07 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=72.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-------------------HHHHHHHHHHc-CCCCCCcc-----
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-------------------LEKATNFAKAN-NFPPDAKV----- 61 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-------------------~~~~~~~~~~~-~~~~~~~~----- 61 (362)
+..+|.|||+|..|...+..|.+. ++.=+.++|.+ ..+++.+++.. .+.|.+.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 457899999999999999998776 32223355543 12233333332 12233222
Q ss_pred ---cCCHHHHhcCCCCcEEEEcCCC-cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe--eeccc
Q 018020 62 ---YGSYEALLDDKDIDAVYLPLPT-SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG--TMWVH 135 (362)
Q Consensus 62 ---~~~~~e~l~~~~~D~V~i~~~~-~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~--~~~r~ 135 (362)
.++.++++. .++|+|+.++.+ .....+...|.+++++++.---.+ .+-.-..+.++ +....
T Consensus 108 ~i~~e~~~~ll~-~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag------------~k~dp~~~~~~di~~t~~ 174 (268)
T PRK15116 108 FITPDNVAEYMS-AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG------------GQIDPTQIQVVDLAKTIQ 174 (268)
T ss_pred ccChhhHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc------------cCCCCCeEEEEeeecccC
Confidence 123445553 258888888766 445556667777787777531110 11122334444 34447
Q ss_pred ChhHHHHHHhhc
Q 018020 136 NPRTAQMKEFVS 147 (362)
Q Consensus 136 ~p~~~~~k~~i~ 147 (362)
+|..+.+|+.++
T Consensus 175 ~pla~~~R~~lr 186 (268)
T PRK15116 175 DPLAAKLRERLK 186 (268)
T ss_pred ChHHHHHHHHHH
Confidence 899999999883
No 319
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.42 E-value=0.14 Score=49.97 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=68.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-CCCCCCccc---CCHHHHh--cCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-NFPPDAKVY---GSYEALL--DDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~~---~~~~e~l--~~~~~D~V~i~~ 81 (362)
+.+|.|+|+|.+|...++.|.+. +.+++ ++|.++++.+.+.+++ +.+ .++ .+.+.+. .-.+.|+|++++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~-~~~v~-vid~~~~~~~~~~~~~~~~~---~i~gd~~~~~~L~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE-GYSVK-LIERDPERAEELAEELPNTL---VLHGDGTDQELLEEEGIDEADAFIALT 305 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCeEE-EEECCHHHHHHHHHHCCCCe---EEECCCCCHHHHHhcCCccCCEEEECC
Confidence 57899999999999999999875 66765 6789999888887764 332 122 3344332 225789999998
Q ss_pred CCcccHHHH-HHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 82 PTSMHVKWA-ISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 82 ~~~~h~~~~-~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++...--.+ ..|-+.| ++|++. +.+.+... ..+..|....
T Consensus 306 ~~~~~n~~~~~~~~~~~~~~ii~~---~~~~~~~~----~~~~~g~~~v 347 (453)
T PRK09496 306 NDDEANILSSLLAKRLGAKKVIAL---VNRPAYVD----LVEGLGIDIA 347 (453)
T ss_pred CCcHHHHHHHHHHHHhCCCeEEEE---ECCcchHH----HHHhcCCCEE
Confidence 876433333 2233444 456653 33444432 3455665443
No 320
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.38 E-value=0.3 Score=45.70 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=54.4
Q ss_pred eEEEEEeccHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC---c
Q 018020 9 IRFGIIGAADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT---S 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~---~ 84 (362)
=+|+|+|+|.+|...+..+++ ....+++ ++|+++++++.+ ++.+.. + ..+++.+...+|+|+-++.. .
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi-~~~~~~~k~~~a-~~~~~~-----~-~~~~~~~~~g~d~viD~~G~~~~~ 236 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLV-VFGKHQEKLDLF-SFADET-----Y-LIDDIPEDLAVDHAFECVGGRGSQ 236 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEE-EEeCcHhHHHHH-hhcCce-----e-ehhhhhhccCCcEEEECCCCCccH
Confidence 378999999999888887775 4445655 567887776654 445421 1 22333333358999999884 3
Q ss_pred ccHHHHHHHHHcC-CeEEE
Q 018020 85 MHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 85 ~h~~~~~~al~~g-k~V~~ 102 (362)
.....+.++++.| +-|++
T Consensus 237 ~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHHHHHhCcCCcEEEEE
Confidence 3455566677666 43444
No 321
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.37 E-value=0.11 Score=50.95 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=57.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH-----HHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE-----KATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-||+|+|.|..|...+..|++. ++++. ++|.++. ..+.+ ++.|+. +....+..+.+. ++|+|+++..-
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~-G~~V~-~~D~~~~~~~~~~~~~l-~~~gi~--~~~~~~~~~~~~--~~dlVV~Spgi 87 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL-GAKVT-AFDKKSEEELGEVSNEL-KELGVK--LVLGENYLDKLD--GFDVIFKTPSM 87 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCEEE-EECCCCCccchHHHHHH-HhCCCE--EEeCCCChHHhc--cCCEEEECCCC
Confidence 4899999999999888888877 67755 6886532 11222 334542 011122334444 48998887444
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018020 84 SMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~E 103 (362)
....+.+..|.+.|.+|+.|
T Consensus 88 ~~~~p~~~~a~~~~i~i~s~ 107 (458)
T PRK01710 88 RIDSPELVKAKEEGAYITSE 107 (458)
T ss_pred CCCchHHHHHHHcCCcEEec
Confidence 45567888889999999865
No 322
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=95.35 E-value=0.56 Score=43.32 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=57.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
=+|.|.|+|.+|...+..++.. +++++.+.+ +.++.+.+ +++|.. .+.+.++. ....+|+++.+++...+.+
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~-~~~~~~~~-~~~g~~----~~~~~~~~-~~~~vD~vi~~~~~~~~~~ 240 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQ-GAEVFAFTR-SGEHQELA-RELGAD----WAGDSDDL-PPEPLDAAIIFAPVGALVP 240 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEEEcC-ChHHHHHH-HHhCCc----EEeccCcc-CCCcccEEEEcCCcHHHHH
Confidence 3678889999998887777766 688776654 44544444 777752 22222222 2246899999887778889
Q ss_pred HHHHHHHcCCeEE
Q 018020 89 WAISVAQKKKHLL 101 (362)
Q Consensus 89 ~~~~al~~gk~V~ 101 (362)
.+.++++.+-.+.
T Consensus 241 ~~~~~l~~~G~~v 253 (329)
T cd08298 241 AALRAVKKGGRVV 253 (329)
T ss_pred HHHHHhhcCCEEE
Confidence 9999998764433
No 323
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.35 E-value=0.1 Score=39.69 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=52.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc-
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM- 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~- 85 (362)
+..+|.|||.|..|..-++.|.+. ++++..+. +..+..+ +... -.-..+++.++ +.|+|+++|++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis-~~~~~~~---~~i~-----~~~~~~~~~l~--~~~lV~~at~d~~~ 73 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA-GAKVTVIS-PEIEFSE---GLIQ-----LIRREFEEDLD--GADLVFAATDDPEL 73 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC-TBEEEEEE-SSEHHHH---TSCE-----EEESS-GGGCT--TESEEEE-SS-HHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEC-Cchhhhh---hHHH-----HHhhhHHHHHh--hheEEEecCCCHHH
Confidence 357899999999999999999877 58877554 4421111 1111 12234455555 4899999998754
Q ss_pred cHHHHHHHHHcCCeEEE
Q 018020 86 HVKWAISVAQKKKHLLM 102 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~ 102 (362)
...+...|-++|+.|-+
T Consensus 74 n~~i~~~a~~~~i~vn~ 90 (103)
T PF13241_consen 74 NEAIYADARARGILVNV 90 (103)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhhCCEEEEE
Confidence 45555556567887764
No 324
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=95.32 E-value=0.76 Score=43.67 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=57.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
-+|.+.|+|.+|...+..++.. +++++++. ++.++...+++++|... +..+.+.+++.+. ..+|+|+-++....-.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~-~~~~~~~~~a~~lGa~~-~i~~~~~~~v~~~~~~~D~vid~~G~~~~~ 256 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAF-GLRVTVIS-RSSEKEREAIDRLGADS-FLVTTDSQKMKEAVGTMDFIIDTVSAEHAL 256 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHc-CCeEEEEe-CChHHhHHHHHhCCCcE-EEcCcCHHHHHHhhCCCcEEEECCCcHHHH
Confidence 4688999999999888888777 67777554 44444455667787531 1112222233221 2589999998776555
Q ss_pred HHHHHHHHcCCeEE
Q 018020 88 KWAISVAQKKKHLL 101 (362)
Q Consensus 88 ~~~~~al~~gk~V~ 101 (362)
..+.++++.|-.+.
T Consensus 257 ~~~~~~l~~~G~iv 270 (375)
T PLN02178 257 LPLFSLLKVSGKLV 270 (375)
T ss_pred HHHHHhhcCCCEEE
Confidence 66677777764443
No 325
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.28 E-value=0.076 Score=49.41 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=59.9
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
..+|.|+|+ |.||...++.+....+..-+.+++|+++++..++++++.. . ..++++.+.. +|+|+.++.....
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~---~-i~~l~~~l~~--aDiVv~~ts~~~~ 228 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG---K-ILSLEEALPE--ADIVVWVASMPKG 228 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc---c-HHhHHHHHcc--CCEEEECCcCCcC
Confidence 468999998 8999999998864434323447789999999998887521 2 3467787775 9999988765443
Q ss_pred HHHHHHHHHcCCeEEEeC
Q 018020 87 VKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EK 104 (362)
..+-..-++ ..-++|+=
T Consensus 229 ~~I~~~~l~-~~~~viDi 245 (340)
T PRK14982 229 VEIDPETLK-KPCLMIDG 245 (340)
T ss_pred CcCCHHHhC-CCeEEEEe
Confidence 212222332 23566654
No 326
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.23 E-value=0.19 Score=48.44 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=77.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC----------HHHHHHHH---HHc-C----C---CCCCcccCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS----------LEKATNFA---KAN-N----F---PPDAKVYGSY 65 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~----------~~~~~~~~---~~~-~----~---~~~~~~~~~~ 65 (362)
+-.||+|=|+|+.|...+..+.+. +.+|++|+|.+ .+++..+. +.. + . .++++ +-+-
T Consensus 236 ~Gk~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~-~~~~ 313 (454)
T PTZ00079 236 EGKTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAK-YVPG 313 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcE-EeCC
Confidence 357999999999999888888877 89999999987 66553322 111 1 0 01222 2234
Q ss_pred HHHhcCCCCcEEEE-cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 66 EALLDDKDIDAVYL-PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 66 ~e~l~~~~~D~V~i-~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++++. .++|+.+= ++.+..+.+-+...++.|..+++|--=..+..+|.+ ..+++|+.+.
T Consensus 314 ~~~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~---~L~~~GI~~~ 373 (454)
T PTZ00079 314 KKPWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATH---LFKKNGVIFC 373 (454)
T ss_pred cCccc-CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHH---HHHHCCcEEE
Confidence 56665 37898885 577778888888888999999999522222224444 4466776654
No 327
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.22 E-value=0.056 Score=52.07 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=56.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHH--HHH-HHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKA--TNF-AKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~--~~~-~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..||+|+|+|..|...++.|.+. +.++. ++|.++... ... ...-++. ....+... ..-.++|+|+.+---+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~-v~D~~~~~~~~~~~~~~~~~i~---~~~g~~~~-~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL-GAEVT-VSDDRPAPEGLAAQPLLLEGIE---VELGSHDD-EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC-CCeEE-EEcCCCCccchhhhhhhccCce---eecCccch-hccccCCEEEECCCCC
Confidence 68999999999999999999888 57766 566443321 111 1112332 11122222 2234589998754434
Q ss_pred ccHHHHHHHHHcCCeEEEe
Q 018020 85 MHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~E 103 (362)
.-.+++.+|.++|.+|+.|
T Consensus 81 ~~~p~v~~A~~~gi~i~~d 99 (448)
T COG0771 81 PTHPLVEAAKAAGIEIIGD 99 (448)
T ss_pred CCCHHHHHHHHcCCcEEeH
Confidence 3344899999999999864
No 328
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.22 E-value=0.98 Score=42.02 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=57.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
=+|.|.|+|.+|...+..++.. ++.+++ .++++++. ++++++|.. .+.+..+. .....|++++++.......
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~-G~~vi~-~~~~~~~~-~~a~~~Ga~---~vi~~~~~--~~~~~d~~i~~~~~~~~~~ 238 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQ-GATVHV-MTRGAAAR-RLALALGAA---SAGGAYDT--PPEPLDAAILFAPAGGLVP 238 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHC-CCeEEE-EeCChHHH-HHHHHhCCc---eecccccc--CcccceEEEECCCcHHHHH
Confidence 3689999999998777777766 677664 56777764 467778853 22221111 1124788888887766778
Q ss_pred HHHHHHHcCCeEE
Q 018020 89 WAISVAQKKKHLL 101 (362)
Q Consensus 89 ~~~~al~~gk~V~ 101 (362)
.+.++++.|-.+.
T Consensus 239 ~~~~~l~~~G~~v 251 (329)
T TIGR02822 239 PALEALDRGGVLA 251 (329)
T ss_pred HHHHhhCCCcEEE
Confidence 8888888875544
No 329
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=95.19 E-value=0.74 Score=38.75 Aligned_cols=111 Identities=20% Similarity=0.107 Sum_probs=69.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH---HHHcCCCCCCcccCCHHHHhcCC-CCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF---AKANNFPPDAKVYGSYEALLDDK-DIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~e~l~~~-~~D~V~i~~~~~ 84 (362)
-++.=||||. |.--....+..|..+++| .|+++++.+.. +++||++.=..+-.+.-+.|.+. ++|+|+|.-. .
T Consensus 36 ~~l~DIGaGt-Gsi~iE~a~~~p~~~v~A-Ie~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg-~ 112 (187)
T COG2242 36 DRLWDIGAGT-GSITIEWALAGPSGRVIA-IERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG-G 112 (187)
T ss_pred CEEEEeCCCc-cHHHHHHHHhCCCceEEE-EecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC-C
Confidence 3566688876 333333335678888775 57888776544 55677642122346666777664 6999999766 3
Q ss_pred cc---HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 85 MH---VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 85 ~h---~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
.- .+.+...|+.|-.++.- +.+++.+..+++..++.|.
T Consensus 113 ~i~~ile~~~~~l~~ggrlV~n---aitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 113 NIEEILEAAWERLKPGGRLVAN---AITLETLAKALEALEQLGG 153 (187)
T ss_pred CHHHHHHHHHHHcCcCCeEEEE---eecHHHHHHHHHHHHHcCC
Confidence 33 33344444556566653 6688888888888877776
No 330
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=95.15 E-value=1.1 Score=42.23 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=58.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
-++.|+|+|.+|...+..++.. +++++.+. +++++...+.+++|.. .+..+.+.+++.+. ..+|+|+-++......
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~-~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~ 258 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM-GHHVTVIS-SSDKKREEALEHLGAD-DYLVSSDAAEMQEAADSLDYIIDTVPVFHPL 258 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCeEEEEe-CCHHHHHHHHHhcCCc-EEecCCChHHHHHhcCCCcEEEECCCchHHH
Confidence 4688899999999888888766 67776554 5566666666778753 11112222233221 2589999998866566
Q ss_pred HHHHHHHHcC-CeEEE
Q 018020 88 KWAISVAQKK-KHLLM 102 (362)
Q Consensus 88 ~~~~~al~~g-k~V~~ 102 (362)
+.+..+++.| +-|.+
T Consensus 259 ~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 259 EPYLSLLKLDGKLILM 274 (357)
T ss_pred HHHHHHhccCCEEEEE
Confidence 6677788776 44444
No 331
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.14 E-value=0.12 Score=48.93 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=27.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
+.-||.|||+|..|...+..|... ++.-+.++|.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~-Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASA-GVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 356899999999999999999877 55445577765
No 332
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.13 E-value=0.072 Score=49.10 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=34.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN 54 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~ 54 (362)
.|||+|||+|.+|..++-.|.+. +.+|+ +++|..++.+++.++.|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G~~V~-lv~r~~~~~~~i~~~~G 46 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-GLPVR-LILRDRQRLAAYQQAGG 46 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-CCCeE-EEEechHHHHHHhhcCC
Confidence 47899999999999988888766 45655 56777777777766543
No 333
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.13 E-value=0.059 Score=52.70 Aligned_cols=89 Identities=21% Similarity=0.320 Sum_probs=65.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~e~l~~~~~D~V~i~~~~~ 84 (362)
...|+.|||+|..|...++.++..++...||+.|.+++.... +-.|+| ++. ++.+++++..++-++|+-|..
T Consensus 115 ~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~--~i~Gv~----V~g~~~i~~~v~~~~~~~iiiAips~ 188 (588)
T COG1086 115 NRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGM--KIRGVP----VLGRIEIERVVEELGIQLILIAIPSA 188 (588)
T ss_pred CCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCC--EEecee----eechhHHHHHHHHcCCceEEEecCCC
Confidence 358999999999999999999999999999999998754321 122443 332 377788888899999999887
Q ss_pred cc---HHHHHHHHHcCCeEE
Q 018020 85 MH---VKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h---~~~~~~al~~gk~V~ 101 (362)
.+ .++...+-+.|..|-
T Consensus 189 ~~~~~~~i~~~l~~~~~~v~ 208 (588)
T COG1086 189 SQEERRRILLRLARTGIAVR 208 (588)
T ss_pred CHHHHHHHHHHHHhcCCcEE
Confidence 65 444555666664443
No 334
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.08 E-value=0.41 Score=42.15 Aligned_cols=141 Identities=12% Similarity=0.118 Sum_probs=76.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-------------------HHHHHHHHHcC-CCCCCcc--c--
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-------------------EKATNFAKANN-FPPDAKV--Y-- 62 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-------------------~~~~~~~~~~~-~~~~~~~--~-- 62 (362)
+..||.|||+|..|...+..|.+. ++.=+-++|.+. .+++.+++++. +.|.+++ +
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 357899999999999999999777 443333666432 12222232221 1122211 1
Q ss_pred ----CCHHHHhcCCCCcEEEEcCCCcc-cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe--eeccc
Q 018020 63 ----GSYEALLDDKDIDAVYLPLPTSM-HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG--TMWVH 135 (362)
Q Consensus 63 ----~~~~e~l~~~~~D~V~i~~~~~~-h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~--~~~r~ 135 (362)
++.++++. .++|+|+.|+.+.. ...+...|.+.+++++.---.+. +-....+.+. +....
T Consensus 89 ~i~~~~~~~l~~-~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~------------~~dp~~i~i~di~~t~~ 155 (231)
T cd00755 89 FLTPDNSEDLLG-GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGG------------KLDPTRIRVADISKTSG 155 (231)
T ss_pred ecCHhHHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcC------------CCCCCeEEEccEecccc
Confidence 23445553 25788888766543 34455566677777665321110 0011222333 34446
Q ss_pred ChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 136 NPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 136 ~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
+|..+.+|+.+++.|.. ..+.+-|+.
T Consensus 156 ~pla~~~R~~Lrk~~~~---~~~~~v~S~ 181 (231)
T cd00755 156 DPLARKVRKRLRKRGIF---FGVPVVYST 181 (231)
T ss_pred CcHHHHHHHHHHHcCCC---CCeEEEeCC
Confidence 89999999999443332 234455543
No 335
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.07 E-value=0.2 Score=40.44 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=58.9
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcC--CCCcEEEEc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDD--KDIDAVYLP 80 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~--~~~D~V~i~ 80 (362)
||.|||+|.+|...+..|... ++.-+.++|.+.-....+.+++ |.+ + .+.+.+.+.. +.+++-.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~---K-a~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GVGKITLIDFDTVELSNLNRQFLARQADIGKP---K-AEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCcCcchhhccccCChhHCCCh---H-HHHHHHHHHHHCCCcEEEEEe
Confidence 589999999999999999877 5544557887643333332222 211 1 1122222222 223333222
Q ss_pred CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 81 LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
... -.......++ +-.+++. ...+.+.-..+.+.|+++++++....
T Consensus 76 ~~~--~~~~~~~~~~-~~diVi~--~~d~~~~~~~l~~~~~~~~i~~i~~~ 121 (143)
T cd01483 76 EGI--SEDNLDDFLD-GVDLVID--AIDNIAVRRALNRACKELGIPVIDAG 121 (143)
T ss_pred eec--ChhhHHHHhc-CCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 211 1111122332 3345543 34456666777788888887776543
No 336
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.07 E-value=0.61 Score=43.12 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=55.2
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|||.|+|+ |++|...++.|.+. +.+|++++ |+.++...+. ..++. -+..-.+++.+.++ ++|+|+-+....
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~-R~~~~~~~l~-~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-GYQVRCLV-RNLRKASFLK-EWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEE-cChHHhhhHh-hcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCC
Confidence 47999995 99999999998876 68877664 6655443332 22321 00011123444555 589998765321
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
.. +.. .-...+......++++|+++|+
T Consensus 76 ~~----------~~~----~~~~~~~~~~~~l~~aa~~~gv 102 (317)
T CHL00194 76 PS----------DLY----NAKQIDWDGKLALIEAAKAAKI 102 (317)
T ss_pred CC----------Ccc----chhhhhHHHHHHHHHHHHHcCC
Confidence 10 000 0112345556667777777665
No 337
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=95.04 E-value=0.31 Score=44.99 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=77.3
Q ss_pred eeEEEEEec-cHHHHHHHHHHhc---CCCcEEEEEEcCCHHHHHHHHHHcCCCCCC-------cccC-----CHHHHhcC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITL---APNAVLSAVASRSLEKATNFAKANNFPPDA-------KVYG-----SYEALLDD 71 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~---~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~e~l~~ 71 (362)
+.-+.|.|+ |+.|+.....+.+ .++.. .||+.|+++++++..+..+.+.+. .+.+ |++||...
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~s-lavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~ 83 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLS-LAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ 83 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCce-EEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhh
Confidence 788999997 7778876666544 34555 569999999998877766532111 1122 37777765
Q ss_pred CCCcEEEEcCCCccc--HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHH----HHHHHcCCEEE
Q 018020 72 KDIDAVYLPLPTSMH--VKWAISVAQKKKHLLMEKPMALNVAEFDVIL----NACEENGVQLM 128 (362)
Q Consensus 72 ~~~D~V~i~~~~~~h--~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~----~~a~~~~~~~~ 128 (362)
.-+|+.|.-|..| ..++++|+++|.|-+ + ++--++=.++|. +.|+++|+.+.
T Consensus 84 --~~vivN~vGPyR~hGE~VVkacienG~~~v-D--ISGEP~f~E~mq~kYhd~A~ekGVYIV 141 (423)
T KOG2733|consen 84 --ARVIVNCVGPYRFHGEPVVKACIENGTHHV-D--ISGEPQFMERMQLKYHDLAKEKGVYIV 141 (423)
T ss_pred --hEEEEeccccceecCcHHHHHHHHcCCcee-c--cCCCHHHHHHHHHHHHHHHHhcCeEEE
Confidence 8889988888644 678889999998744 2 444444444443 46788886643
No 338
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.04 E-value=0.063 Score=43.74 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=48.5
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CC-------CcccCCHHHHhcCCCCcEEEEc
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PD-------AKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~-------~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|+|+|+|.+|..++-.|.+ .+.++. ++++.+ +.+.+.++ |+. +. .....+. ......+|+|+|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~-l~~r~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVT-LVSRSP-RLEAIKEQ-GLTITGPDGDETVQPPIVISAP--SADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEE-EEESHH-HHHHHHHH-CEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceE-EEEccc-cHHhhhhe-eEEEEecccceecccccccCcc--hhccCCCcEEEEE
Confidence 7899999999999999977 577755 666766 66665443 321 00 0011111 1222469999999
Q ss_pred CCCcccHHHHHHH
Q 018020 81 LPTSMHVKWAISV 93 (362)
Q Consensus 81 ~~~~~h~~~~~~a 93 (362)
+......+.+...
T Consensus 75 vKa~~~~~~l~~l 87 (151)
T PF02558_consen 75 VKAYQLEQALQSL 87 (151)
T ss_dssp SSGGGHHHHHHHH
T ss_pred ecccchHHHHHHH
Confidence 9988777766553
No 339
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.02 E-value=0.24 Score=42.46 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=28.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
..||.|||+|..|...+..|... ++.-+.++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence 56899999999999999999877 666666888753
No 340
>PRK06091 membrane protein FdrA; Validated
Probab=95.01 E-value=0.1 Score=51.31 Aligned_cols=67 Identities=9% Similarity=0.169 Sum_probs=56.8
Q ss_pred ccCCHHHHhcC-CCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 61 VYGSYEALLDD-KDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 61 ~~~~~~e~l~~-~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+.++.+++++ +++|+++|++|...-.+.+++|+++|+++++--- ....+.-++|.+.|+++|+.++
T Consensus 104 ~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~-gfg~~~E~~L~e~Ar~~Glrvm 171 (555)
T PRK06091 104 QVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRNLNVMMFSD-NVTLEDEIRLKTRAREKGLLVM 171 (555)
T ss_pred ccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcC-CCCHHHHHHHHHHHHHcCCEEE
Confidence 57899998865 6789999999999999999999999999876322 3367788999999999998765
No 341
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.94 E-value=0.062 Score=49.52 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=45.1
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC----CC--CCCccc-CCHHHHhcCCCCcEEEEcCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN----FP--PDAKVY-GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~----~~--~~~~~~-~~~~e~l~~~~~D~V~i~~~ 82 (362)
||+|||+|.+|...+..+...+-+.-+.++|.++++++..+.++. +. ..++++ .+++++ + +.|+|+|+.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~--~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-A--DADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-C--CCCEEEECCC
Confidence 699999999999887777655545445589998877665544431 11 122333 444443 3 4899999644
No 342
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=94.93 E-value=0.22 Score=44.71 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=61.7
Q ss_pred HHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
.++.++++|++--+.+ ..+.+.+. +- +|++-|++..-.+.+++..+.+.||+|++.++.+.++++....++..++.
T Consensus 81 l~~~~~~~Gl~~~t~~~d~~~~~~l~-~~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~ 158 (260)
T TIGR01361 81 LRRAADEHGLPVVTEVMDPRDVEIVA-EY-ADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSS 158 (260)
T ss_pred HHHHHHHhCCCEEEeeCChhhHHHHH-hh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 5667888998611111 23444444 33 99999999999999999999999999999999999999999998888775
Q ss_pred CC
Q 018020 124 GV 125 (362)
Q Consensus 124 ~~ 125 (362)
|.
T Consensus 159 Gn 160 (260)
T TIGR01361 159 GN 160 (260)
T ss_pred CC
Confidence 54
No 343
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=94.92 E-value=0.07 Score=51.77 Aligned_cols=89 Identities=13% Similarity=0.211 Sum_probs=56.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEc-CCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVAS-RSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~ 83 (362)
+|||.|||.|......+..+++.+ .+|..+.. .++.. ..+++.+-. .-..|+++++ ...++|+|++....
T Consensus 2 ~~kVLvlG~G~re~al~~~l~~~g-~~v~~~~~~~Npg~-~~~a~~~~~----~~~~d~e~l~~~~~~~~id~Vi~~~d~ 75 (435)
T PRK06395 2 TMKVMLVGSGGREDAIARAIKRSG-AILFSVIGHENPSI-KKLSKKYLF----YDEKDYDLIEDFALKNNVDIVFVGPDP 75 (435)
T ss_pred ceEEEEECCcHHHHHHHHHHHhCC-CeEEEEECCCChhh-hhcccceee----cCCCCHHHHHHHHHHhCCCEEEECCCh
Confidence 489999999987777777788774 56665533 23332 122322210 1125666654 45789999987555
Q ss_pred cccHHHHHHHHHcCCeEEE
Q 018020 84 SMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~ 102 (362)
.....++....+.|.+|+.
T Consensus 76 ~l~~~~~~~l~~~Gi~v~g 94 (435)
T PRK06395 76 VLATPLVNNLLKRGIKVAS 94 (435)
T ss_pred HHHHHHHHHHHHCCCcEEC
Confidence 4555566666788988874
No 344
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.91 E-value=0.14 Score=50.31 Aligned_cols=88 Identities=16% Similarity=0.032 Sum_probs=57.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HHHHHH---HHHHcCCCCCCcccC-CHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATN---FAKANNFPPDAKVYG-SYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~~~~~---~~~~~~~~~~~~~~~-~~~e~l~~~~~D~V~i~~~ 82 (362)
.-+|.|||+|..|...+..|.+. +.+|+ ++|.+ .+.... ..++.|+. ++. +..+. ..++|+|++++-
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~-G~~V~-~~d~~~~~~~~~~~~~l~~~gv~----~~~~~~~~~--~~~~D~Vv~s~G 87 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLEL-GARVT-VVDDGDDERHRALAAILEALGAT----VRLGPGPTL--PEDTDLVVTSPG 87 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCchhhhHHHHHHHHHcCCE----EEECCCccc--cCCCCEEEECCC
Confidence 35899999999999888888776 67766 56643 332222 22344653 321 11121 235899999887
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018020 83 TSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~E 103 (362)
-....+.+..|.++|.+|+-|
T Consensus 88 i~~~~~~~~~a~~~gi~v~~~ 108 (480)
T PRK01438 88 WRPDAPLLAAAADAGIPVWGE 108 (480)
T ss_pred cCCCCHHHHHHHHCCCeecch
Confidence 666667888888889888643
No 345
>PLN02827 Alcohol dehydrogenase-like
Probab=94.91 E-value=0.99 Score=42.90 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=57.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----CHHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----SYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~e~l~---~~~~D~V~i~~ 81 (362)
=+|.|+|+|.+|...+..++.. ++..+.+.++++++.+ +++++|.. .+.-+. ++.+.+. ...+|+|+-++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~-~a~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 271 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAE-KAKTFGVT-DFINPNDLSEPIQQVIKRMTGGGADYSFECV 271 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHH-HHHHcCCc-EEEcccccchHHHHHHHHHhCCCCCEEEECC
Confidence 4788999999999888888766 6654546777777655 55777753 111111 2333221 12699999999
Q ss_pred CCcccHHHHHHHHHcC
Q 018020 82 PTSMHVKWAISVAQKK 97 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g 97 (362)
........+..+++.|
T Consensus 272 G~~~~~~~~l~~l~~g 287 (378)
T PLN02827 272 GDTGIATTALQSCSDG 287 (378)
T ss_pred CChHHHHHHHHhhccC
Confidence 8877777788888776
No 346
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.86 E-value=0.035 Score=44.45 Aligned_cols=119 Identities=12% Similarity=0.227 Sum_probs=61.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC---CCcccCCHHHHhcC--CCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP---DAKVYGSYEALLDD--KDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~~e~l~~--~~~D~V~i~~~ 82 (362)
..||+|+|+|..|...+..|... ++.-+.++|.+.-....+.+++-..+ +..-.+-+.+.|.. +.+++..+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 46899999999999999999877 55445578875432222211110000 00001112222322 33443333333
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
. ..+.....++ +-.+++. ...+.+.-..|.+.|+++++++..+..
T Consensus 81 ~--~~~~~~~~~~-~~d~vi~--~~d~~~~~~~l~~~~~~~~~p~i~~~~ 125 (135)
T PF00899_consen 81 I--DEENIEELLK-DYDIVID--CVDSLAARLLLNEICREYGIPFIDAGV 125 (135)
T ss_dssp C--SHHHHHHHHH-TSSEEEE--ESSSHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred c--cccccccccc-CCCEEEE--ecCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 3 3344444443 4344443 244566666777788888887765543
No 347
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=94.82 E-value=0.1 Score=44.50 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=53.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCC-cccH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPT-SMHV 87 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~-~~h~ 87 (362)
++.|+|+|..|+..++.|++. ++++++.+|.++..... .-.|+| ++.+.+++... .+.+.++++++. ..+.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid~~~~~~~~--~i~g~p----vlg~~~~l~~~~~~~~~~iiai~~~~~~~ 73 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLDDNPALQGT--SVDGLP----VLGGDEDLLRYPPDEVDLVVAIGDNKLRR 73 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEcCCccccCc--ccCCcc----EECCHHHHhhhcccccEEEEEcCCHHHHH
Confidence 478999999999999999875 89999999987543221 113443 56666665432 346778887754 3444
Q ss_pred HHHHHHHHcC
Q 018020 88 KWAISVAQKK 97 (362)
Q Consensus 88 ~~~~~al~~g 97 (362)
++...+.+.|
T Consensus 74 ~i~~~l~~~g 83 (201)
T TIGR03570 74 RLFEKLKAKG 83 (201)
T ss_pred HHHHHHHhCC
Confidence 4544444444
No 348
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.82 E-value=0.31 Score=46.96 Aligned_cols=115 Identities=8% Similarity=-0.005 Sum_probs=73.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEc----------CCHHHHH---HHHHH-cC-CC-----CCCcccCCHH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVAS----------RSLEKAT---NFAKA-NN-FP-----PDAKVYGSYE 66 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d----------~~~~~~~---~~~~~-~~-~~-----~~~~~~~~~~ 66 (362)
+-.||+|.|+|+.|...+..|.+. +++|++|+| .+.+.+. +..++ .+ +. .++ .+-+.+
T Consensus 227 ~g~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga-~~i~~d 304 (444)
T PRK14031 227 KGKVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGC-KYVEGA 304 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCC-EEcCCc
Confidence 457999999999999989988876 899999999 6665543 11111 11 00 011 123556
Q ss_pred HHhcCCCCcEEEE-cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 67 ALLDDKDIDAVYL-PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 67 e~l~~~~~D~V~i-~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
++++. ++|+.+= ++.+.-+.+-+.+....|.-+++|--=..+..++.+ ...++|+.+
T Consensus 305 ~~~~~-~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~---~L~~rgI~~ 362 (444)
T PRK14031 305 RPWGE-KGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIK---VFQDAKILY 362 (444)
T ss_pred ccccC-CCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHH---HHHHCCcEE
Confidence 66654 6888885 455667777777776667778888643334444443 335556554
No 349
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.81 E-value=0.21 Score=45.48 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=63.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
.+++|+|+|..|.--.+..+.+ +.+++++ |++..+.++..+.+| .|..++++....--+
T Consensus 183 ~~vgI~GlGGLGh~aVq~AKAM-G~rV~vi-s~~~~kkeea~~~LG-------------------Ad~fv~~~~d~d~~~ 241 (360)
T KOG0023|consen 183 KWVGIVGLGGLGHMAVQYAKAM-GMRVTVI-STSSKKKEEAIKSLG-------------------ADVFVDSTEDPDIMK 241 (360)
T ss_pred cEEEEecCcccchHHHHHHHHh-CcEEEEE-eCCchhHHHHHHhcC-------------------cceeEEecCCHHHHH
Confidence 6799999988777666666777 7887854 555444454445554 455555555555555
Q ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 018020 89 WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWV 134 (362)
Q Consensus 89 ~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r 134 (362)
.+..+++-+.|-.+ ..+......++.+++..|..+++|.+.-
T Consensus 242 ~~~~~~dg~~~~v~----~~a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 242 AIMKTTDGGIDTVS----NLAEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred HHHHhhcCcceeee----eccccchHHHHHHhhcCCEEEEEeCcCC
Confidence 56666666655332 1122234556677788888888887664
No 350
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.80 E-value=0.11 Score=50.53 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=57.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHH----HHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKA----TNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~----~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~ 82 (362)
-+|.|+|.|.+|...+..|.+. +++|+ ++|++.... +.+ ++.|+. ++ .+..+++.. .+|+|+++.-
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~-G~~V~-~~d~~~~~~~~~~~~l-~~~g~~----~~~~~~~~~~~~~-~~d~vV~s~g 77 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL-GANVT-VNDGKPFSENPEAQEL-LEEGIK----VICGSHPLELLDE-DFDLMVKNPG 77 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC-CCEEE-EEcCCCccchhHHHHH-HhcCCE----EEeCCCCHHHhcC-cCCEEEECCC
Confidence 4689999999999888888877 67766 567654221 222 233542 32 334444432 4898877654
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018020 83 TSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~E 103 (362)
-....+.+.+|.+.|.+|+.+
T Consensus 78 i~~~~~~~~~a~~~~i~v~~~ 98 (447)
T PRK02472 78 IPYTNPMVEKALEKGIPIITE 98 (447)
T ss_pred CCCCCHHHHHHHHCCCcEEeH
Confidence 444557888889999998854
No 351
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.75 E-value=1 Score=42.62 Aligned_cols=89 Identities=10% Similarity=0.095 Sum_probs=58.0
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CH-HHHhc--CCCCcEEEEcCCCc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SY-EALLD--DKDIDAVYLPLPTS 84 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~-~e~l~--~~~~D~V~i~~~~~ 84 (362)
+|.|+|+|.+|...+..++.. +++.+.+.++++++.+ +++++|.. .+.-+. ++ +++.+ ...+|+|+-++...
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~-~a~~~Ga~-~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLA-LARELGAT-ATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHH-HHHHcCCc-eEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 689999999998888877766 6643335677877665 55777753 111111 22 22221 12689999999877
Q ss_pred ccHHHHHHHHHcCCeEE
Q 018020 85 MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~ 101 (362)
.....+.++++.|-.++
T Consensus 271 ~~~~~~~~~l~~~G~iv 287 (371)
T cd08281 271 PALETAYEITRRGGTTV 287 (371)
T ss_pred HHHHHHHHHHhcCCEEE
Confidence 77778888887774443
No 352
>PRK06444 prephenate dehydrogenase; Provisional
Probab=94.73 E-value=0.063 Score=46.01 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=40.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||+|||. |.||+.+...+++. ++.+. + .+.|+|++|+|...-.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g~~v~--------------------------------~--~~~DlVilavPv~~~~ 45 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-GLGVY--------------------------------I--KKADHAFLSVPIDAAL 45 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-CCEEE--------------------------------E--CCCCEEEEeCCHHHHH
Confidence 58999998 99999999999877 66643 1 2589999999998777
Q ss_pred HHHHHH
Q 018020 88 KWAISV 93 (362)
Q Consensus 88 ~~~~~a 93 (362)
+++.+.
T Consensus 46 ~~i~~~ 51 (197)
T PRK06444 46 NYIESY 51 (197)
T ss_pred HHHHHh
Confidence 777654
No 353
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=94.72 E-value=0.078 Score=51.83 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=54.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-|+.|||+|..|...+..+++.+ +++++|++|.++..... .-.|+| ++ +++.+.+...++|.|+|+.|..
T Consensus 126 rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~--~i~g~p----Vlg~~~l~~~i~~~~id~ViIAip~~ 199 (456)
T TIGR03022 126 RPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAASGR--LLTGLP----VVGADDALRLYARTRYAYVIVAMPGT 199 (456)
T ss_pred ceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCcccccc--ccCCCc----ccChhHHHHHHHhCCCCEEEEecCCc
Confidence 47999999999998899887655 58999999976432211 112332 44 3455556667899999998854
Q ss_pred cc---HHHHHHHHHcCC
Q 018020 85 MH---VKWAISVAQKKK 98 (362)
Q Consensus 85 ~h---~~~~~~al~~gk 98 (362)
.. .+++..+-+.|.
T Consensus 200 ~~~~~~~ll~~l~~~~v 216 (456)
T TIGR03022 200 QAEDMARLVRKLGALHF 216 (456)
T ss_pred cHHHHHHHHHHHHhCCC
Confidence 32 333444444444
No 354
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.71 E-value=0.12 Score=49.51 Aligned_cols=189 Identities=20% Similarity=0.222 Sum_probs=107.0
Q ss_pred ceeEEEEEec-cHHHH-HHHHHHhc-------CCCcEEEEEEcCC--HH---------------------HHHHHHHHcC
Q 018020 7 AAIRFGIIGA-ADIAR-KLSRAITL-------APNAVLSAVASRS--LE---------------------KATNFAKANN 54 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~-~~~~~~~~-------~~~~~vv~v~d~~--~~---------------------~~~~~~~~~~ 54 (362)
.+..+.|.|+ |-.++ ...|+|-+ .+.+.|+|+.-+. .+ ..+.|++.+-
T Consensus 6 ~~~~lvIFGatGDLA~RKL~PALy~L~~~g~l~~~~~IiG~aR~~~s~e~f~~~~~~~i~~~~~~~~~~~~~~~F~~~~~ 85 (483)
T COG0364 6 EPFDLVIFGATGDLARRKLFPALYRLYKEGLLPEDFRIIGVARSKWSNEEFRALVREAIEFAKTEEIDEAVWEEFASRLS 85 (483)
T ss_pred CcceEEEEcccchhhhhhHHHHHHHHHHcCCCCCCceEEEEecCcCChHHHHHHHHHHhhhcccccccHHHHHHHHhceE
Confidence 4677888886 66666 35666522 2357889877431 11 1233333321
Q ss_pred C-C---CCCcccCCHHHHhcCCC-CcEEEEcCCCcccHHHHHHHHHcC-----CeEEEeCCCCCCHHHHHHHHHHHHHc-
Q 018020 55 F-P---PDAKVYGSYEALLDDKD-IDAVYLPLPTSMHVKWAISVAQKK-----KHLLMEKPMALNVAEFDVILNACEEN- 123 (362)
Q Consensus 55 ~-~---~~~~~~~~~~e~l~~~~-~D~V~i~~~~~~h~~~~~~al~~g-----k~V~~EKP~~~~~~~~~~l~~~a~~~- 123 (362)
- + .+..-|..+.++|...+ .-+.++++||+.-..++...-++| .-|++|||++.|++.|++|.+...+.
T Consensus 86 Y~~~d~~~~~~~~~L~~~l~~~~~~~vfYLa~pP~~f~~i~~~L~~~~l~~~~~RlviEKPfG~dL~SA~~Ln~~i~~~F 165 (483)
T COG0364 86 YVSGDYDDPESFDELKDLLGELEGNRVFYLAVPPSLFGTIAENLAKAGLNEGNGRLVIEKPFGHDLASARELNDQISAVF 165 (483)
T ss_pred EEecCCCCHHHHHHHHHHHhcccCceEEEEecChHHHHHHHHHHHHccCCCCCceEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 0 0 11233444555565422 458889999999888888777776 26899999999999999999977653
Q ss_pred --CCEEEEeee-----------cccChhHHHHHHhhcCCCCccceEEEEEEeee----cCCcccccCccCcCCCCCCCcc
Q 018020 124 --GVQLMDGTM-----------WVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF----AGDAEFLKNDIRVKPDLDGLGA 186 (362)
Q Consensus 124 --~~~~~v~~~-----------~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~----~~~~~~~~~~w~~~~~~~ggg~ 186 (362)
.-.+-+.+- .||. ..+-+-+ =+. --|-+|++...= -.+..|+ +..|+
T Consensus 166 ~E~qIyRIDHYLGKetVQNllalRFa---N~~fE~l-WNr--~~Id~VqIt~aE~~GvEgRggYY----------D~~Ga 229 (483)
T COG0364 166 KEEQIYRIDHYLGKETVQNLLALRFA---NAIFEPL-WNR--NYIDHVQITVAETLGVEGRGGYY----------DKAGA 229 (483)
T ss_pred ChhheEeeccccCHHHHHHHHHHHHh---hhhhhhh-hcc--ccceeEEEEEeeeccccccccch----------hccch
Confidence 223333321 2221 1112222 111 135555555442 1122222 23488
Q ss_pred cccc-cchHHHHHHHHccCCCCcEEEE
Q 018020 187 LGDA-GWYGIRSILWANDYELPKTVIA 212 (362)
Q Consensus 187 l~~~-g~h~id~~~~l~g~~~~~~V~a 212 (362)
|.|+ =-|.+-++..+.- ++|.+..+
T Consensus 230 lRDMvQNHlLQlL~LvAM-E~P~~~~a 255 (483)
T COG0364 230 LRDMVQNHLLQLLCLVAM-EPPASFSA 255 (483)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCCCH
Confidence 8886 4677777766653 46766555
No 355
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.70 E-value=0.17 Score=53.33 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=57.8
Q ss_pred eeEEEEEeccHHHHHH-HHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCccc-CCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVY-GSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~-~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~-~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|.+||.|..|..- ++.|.+. +++|. +.|.++ ...+.+ ++.|+. ++ ....+.+. ++|+|+++..-.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~-G~~V~-~sD~~~~~~~~~L-~~~gi~----~~~g~~~~~~~--~~d~vV~SpgI~ 74 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDR-GYSVS-GSDLSEGKTVEKL-KAKGAR----FFLGHQEEHVP--EDAVVVYSSSIS 74 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHC-CCeEE-EECCCCChHHHHH-HHCCCE----EeCCCCHHHcC--CCCEEEECCCcC
Confidence 4469999999999876 7777776 78866 577543 223333 344653 32 22334454 489988766555
Q ss_pred ccHHHHHHHHHcCCeEEEe
Q 018020 85 MHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~E 103 (362)
...+.+..|.++|.+|+.|
T Consensus 75 ~~~p~~~~a~~~gi~v~~~ 93 (809)
T PRK14573 75 KDNVEYLSAKSRGNRLVHR 93 (809)
T ss_pred CCCHHHHHHHHCCCcEEeH
Confidence 5556677788999999865
No 356
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.69 E-value=0.47 Score=42.23 Aligned_cols=108 Identities=10% Similarity=-0.008 Sum_probs=65.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCC--cccCCHHHHhcC-CCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA--KVYGSYEALLDD-KDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~~-~~~D~V~i~~~~~ 84 (362)
+.|+.|+|+|+.+...++.++.+ +++++ |+|..++.. ..... +++ ....++++.+.. ..-++|+|.|..+
T Consensus 100 ~~~L~IfGaG~va~~la~la~~l-Gf~V~-v~D~R~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h 172 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPL-PCRVT-WVDSREAEF----PEDLP-DGVATLVTDEPEAEVAEAPPGSYFLVLTHDH 172 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcC-CCEEE-EEeCCcccc----cccCC-CCceEEecCCHHHHHhcCCCCcEEEEEeCCh
Confidence 57999999999999999999888 79977 667655522 11111 111 233456666653 3568999999888
Q ss_pred ccHHHHHH-HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 85 MHVKWAIS-VAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 85 ~h~~~~~~-al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
.+-..+.. +|+....-|+- +--|..-..++.+..++.|
T Consensus 173 ~~D~~~L~~aL~~~~~~YIG--~lGSr~k~~~~~~~L~~~G 211 (246)
T TIGR02964 173 ALDLELCHAALRRGDFAYFG--LIGSKTKRARFEHRLRARG 211 (246)
T ss_pred HHHHHHHHHHHhCCCCcEEE--EeCCHHHHHHHHHHHHhcC
Confidence 87655554 44333332332 1224444444555445444
No 357
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.68 E-value=0.16 Score=49.55 Aligned_cols=88 Identities=7% Similarity=0.061 Sum_probs=55.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-||+|+|+|..|...++.|+ . +.+++ +.|..++....+.+..+.. .......+.++ ++|+|+++.--....
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~-g~~v~-v~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~d~vV~SPgI~~~~ 77 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-N-KYDVI-VYDDLKANRDIFEELYSKN---AIAALSDSRWQ--NLDKIVLSPGIPLTH 77 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-C-CCEEE-EECCCCCchHHHHhhhcCc---eeccCChhHhh--CCCEEEECCCCCCCC
Confidence 357999999999999888888 4 78765 6775433222221110111 11122234444 489887765445566
Q ss_pred HHHHHHHHcCCeEEEe
Q 018020 88 KWAISVAQKKKHLLME 103 (362)
Q Consensus 88 ~~~~~al~~gk~V~~E 103 (362)
+.+..|.++|.+|+.|
T Consensus 78 p~~~~a~~~gi~v~~e 93 (454)
T PRK01368 78 EIVKIAKNFNIPITSD 93 (454)
T ss_pred HHHHHHHHCCCceecH
Confidence 7788888999998864
No 358
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.68 E-value=0.17 Score=48.88 Aligned_cols=86 Identities=12% Similarity=0.040 Sum_probs=57.0
Q ss_pred eEEEEEeccHH-HHHHHHHHhcC----CCcEEEEEEcCCHHHHHH-------HHHHcCCCCCCcccCCHHHHhcCCCCcE
Q 018020 9 IRFGIIGAADI-ARKLSRAITLA----PNAVLSAVASRSLEKATN-------FAKANNFPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 9 ~~v~iiG~G~~-g~~~~~~~~~~----~~~~vv~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
|||.|||+|+. ....+..+.+. +..+ +..+|.+++|.+. +.++.|.+-.+..++|.++.|.+ .|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~e-i~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g--ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISE-VTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID--ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCE-EEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC--CCE
Confidence 68999999984 22445555433 3455 4489999987653 44555644446678999999997 999
Q ss_pred EEEcCCCcccHHH---HHHHHHcC
Q 018020 77 VYLPLPTSMHVKW---AISVAQKK 97 (362)
Q Consensus 77 V~i~~~~~~h~~~---~~~al~~g 97 (362)
|+......-+... .+-.++.|
T Consensus 78 Vi~~irvGg~~~r~~De~Iplk~G 101 (425)
T cd05197 78 VINQFRVGGLTYREKDEQIPLKYG 101 (425)
T ss_pred EEEeeecCChHHHHHHHhHHHHcC
Confidence 9987766543222 22355665
No 359
>PLN02285 methionyl-tRNA formyltransferase
Probab=94.66 E-value=0.097 Score=48.83 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=52.3
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcC-----CCcEEEEEEcCCHH-----------HHHHHHHHcCCCCCCccc--C----
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLA-----PNAVLSAVASRSLE-----------KATNFAKANNFPPDAKVY--G---- 63 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~-----~~~~vv~v~d~~~~-----------~~~~~~~~~~~~~~~~~~--~---- 63 (362)
..+|||.++|++.++...+..|.+. .+++|++|+...+. -.+..|.+.|+|... ++ .
T Consensus 4 ~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~-v~~~~~~~~ 82 (334)
T PLN02285 4 GRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDL-IFTPEKAGE 82 (334)
T ss_pred CCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcce-ecCccccCC
Confidence 3589999999999999888887653 36899998765432 157788999997210 11 1
Q ss_pred -CHHHHhcCCCCcEEEEcCC
Q 018020 64 -SYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 64 -~~~e~l~~~~~D~V~i~~~ 82 (362)
...+.|.+.++|+++++.-
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~ 102 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAY 102 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHh
Confidence 1223455668999998743
No 360
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.65 E-value=0.29 Score=45.47 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=64.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHH---HcCCC-C-CCc---------------cc--C
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAK---ANNFP-P-DAK---------------VY--G 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~---~~~~~-~-~~~---------------~~--~ 63 (362)
++||||-|+|.||+..++.+...+++++|+|-|+ +.+....+-+ -+|.- + .+. ++ .
T Consensus 2 ~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~~ 81 (342)
T PTZ00353 2 PITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAKH 81 (342)
T ss_pred CeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEecC
Confidence 3799999999999998888665678999999984 5555544422 12211 1 111 00 1
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
+++++ ..+.++|+|+-||......+-+..-+++| |-|++=-|
T Consensus 82 dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisap 125 (342)
T PTZ00353 82 DLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQ 125 (342)
T ss_pred CcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCC
Confidence 12222 12237999999999998777777888876 66666545
No 361
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.57 E-value=0.14 Score=50.23 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=55.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH----HHHHHHHHcCCCCCCcccC-CHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE----KATNFAKANNFPPDAKVYG-SYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~----~~~~~~~~~~~~~~~~~~~-~~~e~l~~~~~D~V~i~~~~ 83 (362)
-||+|+|+|.-|...++.|.+. +.+++ +.|.+.. ...++.+ .+. ..+. ...+.+. ++|+|+++.--
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~-g~~v~-~~d~~~~~~~~~~~~l~~-~~~----~~~~~~~~~~~~--~~d~vV~SpgI 79 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH-LPAQA-LTLFCNAVEAREVGALAD-AAL----LVETEASAQRLA--AFDVVVKSPGI 79 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc-CCEEE-EEcCCCcccchHHHHHhh-cCE----EEeCCCChHHcc--CCCEEEECCCC
Confidence 4899999999999999999877 67765 5664321 1122322 221 1222 2234454 58998876555
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018020 84 SMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~E 103 (362)
+...+.+.+|.+.|++|+.|
T Consensus 80 ~~~~p~~~~a~~~~i~i~~~ 99 (468)
T PRK04690 80 SPYRPEALAAAARGTPFIGG 99 (468)
T ss_pred CCCCHHHHHHHHcCCcEEEH
Confidence 55667788889999999864
No 362
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=94.54 E-value=0.084 Score=51.09 Aligned_cols=91 Identities=8% Similarity=-0.073 Sum_probs=57.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~ 83 (362)
++|||.|||.|..-...+..+++.|....+.++-.|.-... .+.....+ .-+.|.++++ ...++|+|++....
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~-~~~~~~~~---~~~~d~~~l~~~a~~~~iD~Vv~g~E~ 78 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPD-DELLPADS---FSILDKSSVQSFLKSNPFDLIVVGPED 78 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhc-cccccccC---cCcCCHHHHHHHHHHcCCCEEEECCch
Confidence 36999999999877677778888877666666655542221 11111111 1246777664 45679999976555
Q ss_pred cccHHHHHHHHHcCCeEE
Q 018020 84 SMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~ 101 (362)
..-..++..+-+.|.+++
T Consensus 79 ~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 79 PLVAGFADWAAELGIPCF 96 (426)
T ss_pred HHHHHHHHHHHHcCCCcC
Confidence 555566667777787654
No 363
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=94.53 E-value=0.14 Score=47.45 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=63.6
Q ss_pred EEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcC-CHHHHHHHHH-H--cC-CCCCCcccC------------------C
Q 018020 10 RFGIIGAADIARKLSRAITLA--PNAVLSAVASR-SLEKATNFAK-A--NN-FPPDAKVYG------------------S 64 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~-~~~~~~~~~~-~--~~-~~~~~~~~~------------------~ 64 (362)
||||-|+|.||+..++.+... +++++++|-|. +.+.+..+-+ + +| ++..+.+.+ +
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~d 80 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASERD 80 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecCC
Confidence 699999999999888886655 47999999986 3333333311 0 12 111111111 2
Q ss_pred HHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++++ ..+.++|+|+-||......+.+..++++| |-|.+--|
T Consensus 81 p~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap 123 (327)
T TIGR01534 81 PSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP 123 (327)
T ss_pred cccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC
Confidence 2222 22237999999999999999999999999 66666545
No 364
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.52 E-value=0.17 Score=49.17 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=55.0
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH-HHH---HHHH-HcCCCCCCcccC-CHHHHhcCCCCcEEEEcCCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE-KAT---NFAK-ANNFPPDAKVYG-SYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~-~~~---~~~~-~~~~~~~~~~~~-~~~e~l~~~~~D~V~i~~~~ 83 (362)
||.+||.|..|...++.|++. +.+|. ++|.... ... ...+ ..|+. ++. .-.+.++ +.|+|+++.--
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~-G~~V~-~sD~~~~~~~~~~~~~~~~~~gi~----~~~g~~~~~~~--~~d~vv~sp~i 72 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK-GAEVT-VTDLKPNEELEPSMGQLRLNEGSV----LHTGLHLEDLN--NADLVVKSPGI 72 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC-CCEEE-EEeCCCCccchhHHHHHhhccCcE----EEecCchHHhc--cCCEEEECCCC
Confidence 589999999999888888877 77766 5775432 111 1112 23543 332 1134444 48988776544
Q ss_pred cccHHHHHHHHHcCCeEEEeC
Q 018020 84 SMHVKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EK 104 (362)
+...+.+.+|.++|++|+.|-
T Consensus 73 ~~~~p~~~~a~~~~i~i~~~~ 93 (433)
T TIGR01087 73 PPDHPLVQAAAKRGIPVVGDI 93 (433)
T ss_pred CCCCHHHHHHHHCCCcEEEHH
Confidence 444567778889999988653
No 365
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=94.45 E-value=0.1 Score=48.21 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=51.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-----------HHHHHHHHHHcCCCCCCcccCC-----HHHHhcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-----------LEKATNFAKANNFPPDAKVYGS-----YEALLDDK 72 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-----------~~~~~~~~~~~~~~~~~~~~~~-----~~e~l~~~ 72 (362)
|||+++|.+.++...+..|.+. +.++++|+... ....+.+|++.|+| +....+ +.+.+...
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip--~~~~~~~~~~~~~~~l~~~ 77 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIP--VLQPEKLRDPEFLAELAAL 77 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCC--EECcCCCCCHHHHHHHHhc
Confidence 6899999999999999998765 78899988532 12467889999987 111122 23445567
Q ss_pred CCcEEEEcCCC
Q 018020 73 DIDAVYLPLPT 83 (362)
Q Consensus 73 ~~D~V~i~~~~ 83 (362)
++|+++++.-.
T Consensus 78 ~~Dliv~~~~~ 88 (309)
T PRK00005 78 NADVIVVVAYG 88 (309)
T ss_pred CcCEEEEehhh
Confidence 89999987543
No 366
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.41 E-value=1.6 Score=41.08 Aligned_cols=89 Identities=15% Similarity=0.036 Sum_probs=58.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHH-HH---hcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYE-AL---LDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~-e~---l~~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...+..++.. +++.+.+.++++++.+. ++++|.. .++ .++. ++ .....+|+|+-+
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~-~~~~Ga~---~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEW-AREFGAT---HTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHH-HHHcCCc---eEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 4789999999999888888766 66533456777776554 4677752 121 1222 22 222469999999
Q ss_pred CCCcccHHHHHHHHHcCCe-EEE
Q 018020 81 LPTSMHVKWAISVAQKKKH-LLM 102 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~-V~~ 102 (362)
+........+..+++.|-. |++
T Consensus 253 ~g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 253 VGRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCHHHHHHHHHHhccCCEEEEE
Confidence 9876666677778876644 444
No 367
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.38 E-value=0.21 Score=48.29 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=57.8
Q ss_pred eEEEEEeccHH-HHHHHHHHhc----CCCcEEEEEEcCCHHHHHH-------HHHHcCCCCCCcccCCHHHHhcCCCCcE
Q 018020 9 IRFGIIGAADI-ARKLSRAITL----APNAVLSAVASRSLEKATN-------FAKANNFPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 9 ~~v~iiG~G~~-g~~~~~~~~~----~~~~~vv~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
|||+|||+|+. +...+..+.. .+..+ +.++|.+++|.+. ..++.|.+-.+..++|.+|.|.. .|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~e-i~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g--ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRE-LVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD--ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCE-EEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC--CCE
Confidence 68999999984 2234444433 33455 4499999987654 33445544446678999999996 999
Q ss_pred EEEcCCCcccH---HHHHHHHHcCC
Q 018020 77 VYLPLPTSMHV---KWAISVAQKKK 98 (362)
Q Consensus 77 V~i~~~~~~h~---~~~~~al~~gk 98 (362)
|+.......+. .-..-.++.|.
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi 102 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGV 102 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCc
Confidence 99877665432 22334778884
No 368
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.38 E-value=0.31 Score=42.50 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=54.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH-HhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA-LLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e-~l~~~~~D~V~i~~~~~~ 85 (362)
+..+|.|||.|..|..-+..|.+. +++|+.|...-.+..+.+++...+. ..-.++++ -++ +.++|+.+|.+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~i~~el~~l~~~~~i~---~~~r~~~~~dl~--g~~LViaATdD~~ 97 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKKFSKEFLDLKKYGNLK---LIKGNYDKEFIK--DKHLIVIATDDEK 97 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCCCHHHHHHHhCCCEE---EEeCCCChHHhC--CCcEEEECCCCHH
Confidence 356899999999999888888776 6776655433223355555543332 11122222 233 5899999999865
Q ss_pred cHH-HHHHHHHcCCeEE
Q 018020 86 HVK-WAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~-~~~~al~~gk~V~ 101 (362)
--. +...|-++|+.|.
T Consensus 98 vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 98 LNNKIRKHCDRLYKLYI 114 (223)
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 444 4444445576555
No 369
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.34 E-value=0.28 Score=43.53 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=67.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+..||.|||+|..|...+..|... ++.-+.++|.+.-....+.++ .|.+ ++ ....+.|..-.+++-+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~---Ka-~~a~~~l~~inp~v~i~ 97 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQP---KV-ESAKDALTQINPHIAIN 97 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCcccccCcccceeeeHhhCCCc---HH-HHHHHHHHHHCCCcEEE
Confidence 356899999999999999999877 555566788765433333222 1221 11 11222332222333333
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
+.+...-.+-+.+.+ .+-.++++ ...+.+.-..|.+.|.++++++..+....+
T Consensus 98 ~~~~~i~~~~~~~~~-~~~DlVvd--~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~ 150 (240)
T TIGR02355 98 PINAKLDDAELAALI-AEHDIVVD--CTDNVEVRNQLNRQCFAAKVPLVSGAAIRM 150 (240)
T ss_pred EEeccCCHHHHHHHh-hcCCEEEE--cCCCHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 222222222233333 34456665 345666666677889999998887655443
No 370
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.33 E-value=0.28 Score=47.98 Aligned_cols=86 Identities=10% Similarity=-0.005 Sum_probs=54.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC-CcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP-TSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~-~~~h~ 87 (362)
.||.+||+|..|...+..|++. +++|. ++|........+ .+.|+. ....-.+-+. ++|+|+++.- +..|.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~-G~~v~-~~D~~~~~~~~l-~~~g~~----~~~~~~~~~~--~~d~vv~sp~i~~~~~ 80 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG-GAEVI-AWDDNPASRAKA-AAAGIT----TADLRTADWS--GFAALVLSPGVPLTHP 80 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC-CCEEE-EECCChhhHHHH-HhcCcc----ccCCChhHHc--CCCEEEECCCCCccCC
Confidence 4799999999998878888877 67755 688765433333 344553 2221112233 5898776432 22332
Q ss_pred ---HHHHHHHHcCCeEEEe
Q 018020 88 ---KWAISVAQKKKHLLME 103 (362)
Q Consensus 88 ---~~~~~al~~gk~V~~E 103 (362)
..+..+.++|++|+.+
T Consensus 81 ~~~~~v~~a~~~gi~i~~~ 99 (460)
T PRK01390 81 KPHWVVDLARAAGVEVIGD 99 (460)
T ss_pred cccHHHHHHHHcCCcEEeH
Confidence 4788888999888863
No 371
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=94.29 E-value=0.079 Score=44.85 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=36.2
Q ss_pred cEEEEcCCCcccHHHHHHHHHcC--------CeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 75 DAVYLPLPTSMHVKWAISVAQKK--------KHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~g--------k~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
=+.++++||..=..++...-++| .-|++|||++.|++.|++|-+...+
T Consensus 107 rifYLAvPP~~f~~i~~~L~~~~l~~~~~g~~RiVvEKPFG~Dl~SA~~Ln~~l~~ 162 (183)
T PF00479_consen 107 RIFYLAVPPSLFGPIARNLSEAGLNEEPNGWSRIVVEKPFGRDLESARELNDQLAE 162 (183)
T ss_dssp EEEEE-S-GGGHHHHHHHHHHHT-S-TSSS-EEEEESSTSTSSHHHHHHHHHHHCT
T ss_pred eEEEeccCHHHHHHHHHHHHHHhcccccCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 37779999987777666555554 2699999999999999999987654
No 372
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=94.28 E-value=0.96 Score=42.36 Aligned_cols=101 Identities=10% Similarity=0.096 Sum_probs=60.4
Q ss_pred eEEEEEeccHH--------------------HHHHHHHHhcCCCcEEEEEEcCCHHHH-----HHHHHHcCCCCCCcccC
Q 018020 9 IRFGIIGAADI--------------------ARKLSRAITLAPNAVLSAVASRSLEKA-----TNFAKANNFPPDAKVYG 63 (362)
Q Consensus 9 ~~v~iiG~G~~--------------------g~~~~~~~~~~~~~~vv~v~d~~~~~~-----~~~~~~~~~~~~~~~~~ 63 (362)
|||.+.|+|+- |..++..|.+. +.+|+ ++|+++++. +.+ .+.|+ .+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a-G~~V~-v~Dr~~~~l~~~~~~~l-~~~Gi----~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA-GHDVV-LAEPNRSILSEELWKKV-EDAGV----KVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC-CCeEE-EEECCHHHhhHHHHHHH-HHCCC----EEeC
Confidence 57888888851 33455556554 56655 789988732 332 34453 5678
Q ss_pred CHHHHhcCCCCcEEEEcCCCccc-HHHHHHHH---HcCCeEEEeCCCCCCHHHH-HHHHHHH
Q 018020 64 SYEALLDDKDIDAVYLPLPTSMH-VKWAISVA---QKKKHLLMEKPMALNVAEF-DVILNAC 120 (362)
Q Consensus 64 ~~~e~l~~~~~D~V~i~~~~~~h-~~~~~~al---~~gk~V~~EKP~~~~~~~~-~~l~~~a 120 (362)
|..+++++ .|+|++++|+..+ .+++...+ ..| .++++.. +.+.... +.+.+..
T Consensus 74 d~~eaa~~--ADvVIlaVP~~~~v~~Vl~~L~~~L~~g-~IVId~S-T~~~~~~s~~l~~~l 131 (342)
T PRK12557 74 DDAEAAKH--GEIHILFTPFGKKTVEIAKNILPHLPEN-AVICNTC-TVSPVVLYYSLEGEL 131 (342)
T ss_pred CHHHHHhC--CCEEEEECCCcHHHHHHHHHHHhhCCCC-CEEEEec-CCCHHHHHHHHHHHh
Confidence 88888864 8999999998874 33433322 233 4666644 3345544 4444443
No 373
>PRK06988 putative formyltransferase; Provisional
Probab=94.27 E-value=0.14 Score=47.29 Aligned_cols=72 Identities=8% Similarity=0.077 Sum_probs=50.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC--------HHHHHHHHHHcCCCCCCcccCC-----HHHHhcCCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS--------LEKATNFAKANNFPPDAKVYGS-----YEALLDDKDI 74 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~--------~~~~~~~~~~~~~~~~~~~~~~-----~~e~l~~~~~ 74 (362)
+|||+++|.+.+|...+..|.+. +.++++|+... ....+++|.++|+|- ....+ ..+.|...++
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~-~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~--~~~~~~~~~~~~~~l~~~~~ 78 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR-GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPV--ITPADPNDPELRAAVAAAAP 78 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC-CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcE--EccccCCCHHHHHHHHhcCC
Confidence 37999999999999888888765 68888887542 124678899999871 11122 2344566789
Q ss_pred cEEEEcCC
Q 018020 75 DAVYLPLP 82 (362)
Q Consensus 75 D~V~i~~~ 82 (362)
|+++++.-
T Consensus 79 Dliv~~~~ 86 (312)
T PRK06988 79 DFIFSFYY 86 (312)
T ss_pred CEEEEehh
Confidence 99987653
No 374
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.19 E-value=0.2 Score=41.26 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=68.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+.-||.|||.|.+|...+..|.+. +.+|+- +++. ..+.+.+.-.+. .....+++- .-.+.|+|+.+|.+..-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~-ga~V~V-Isp~--~~~~l~~l~~i~---~~~~~~~~~-dl~~a~lViaaT~d~e~ 83 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT-GAFVTV-VSPE--ICKEMKELPYIT---WKQKTFSND-DIKDAHLIYAATNQHAV 83 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEE-EcCc--cCHHHHhccCcE---EEecccChh-cCCCceEEEECCCCHHH
Confidence 346899999999999999988776 677663 4443 333333311111 111222221 11358999999998876
Q ss_pred HHHHHHHHHcCCeEE-EeCCCCCCHHHHHH-HHHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 87 VKWAISVAQKKKHLL-MEKPMALNVAEFDV-ILNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 87 ~~~~~~al~~gk~V~-~EKP~~~~~~~~~~-l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
-..+..+.+++..|- ++.|- .+.- +-...+..++.+.+..+-.-.-..+++|+.|
T Consensus 84 N~~i~~~a~~~~~vn~~d~~~-----~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~i 140 (157)
T PRK06719 84 NMMVKQAAHDFQWVNVVSDGT-----ESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQEL 140 (157)
T ss_pred HHHHHHHHHHCCcEEECCCCC-----cCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHH
Confidence 666665555554322 22231 1111 1112233455666655554333445666666
No 375
>PRK08328 hypothetical protein; Provisional
Probab=94.13 E-value=0.43 Score=42.07 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=64.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCC---cccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDA---KVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~---~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.-||+|||+|..|...+..|... ++.-+.++|.+.-....+-+++-.. .++ +-.....+-+..-++|+-+.+.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~ 105 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVG 105 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 46899999999999999999877 5555557787654444443332100 000 000111122222234544443222
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
....+-+...+ .+.+++++ ...+.+.-..+.+.|+++++++..+..
T Consensus 106 ~~~~~~~~~~l-~~~D~Vid--~~d~~~~r~~l~~~~~~~~ip~i~g~~ 151 (231)
T PRK08328 106 RLSEENIDEVL-KGVDVIVD--CLDNFETRYLLDDYAHKKGIPLVHGAV 151 (231)
T ss_pred cCCHHHHHHHH-hcCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 22222233333 35566664 344555545556678888888775543
No 376
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.13 E-value=2.9 Score=39.12 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=58.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-----CHHHHhc----CCCCc----
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG-----SYEALLD----DKDID---- 75 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~l~----~~~~D---- 75 (362)
-+|.|+|+|.+|...+..++.. +.+++ +.++++++.+ +++++|... +..+. ++.+.+. ...+|
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~-G~~vi-~~~~~~~~~~-~~~~~Ga~~-~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAM-GAAVV-AIDIDPEKLE-MMKGFGADL-TLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEE-EEcCCHHHHH-HHHHhCCce-EecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 3789999999999888888877 56765 4677777766 446777531 00111 1222221 12344
Q ss_pred EEEEcCCCcccHHHHHHHHHcCCe-EEEe
Q 018020 76 AVYLPLPTSMHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~gk~-V~~E 103 (362)
+|+.++........+..+++.|-. +++-
T Consensus 244 ~v~d~~g~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 244 KIFECSGSKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred EEEECCCChHHHHHHHHHHhcCCeEEEEC
Confidence 888899887777778888877744 4443
No 377
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.10 E-value=0.23 Score=47.82 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=49.0
Q ss_pred eEEEEEeccHH-HHHHHHHHhc----CCCcEEEEEEcCC-HHHHHH-------HHHHcCCCCCCcccCCHHHHhcCCCCc
Q 018020 9 IRFGIIGAADI-ARKLSRAITL----APNAVLSAVASRS-LEKATN-------FAKANNFPPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 9 ~~v~iiG~G~~-g~~~~~~~~~----~~~~~vv~v~d~~-~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~~~~~D 75 (362)
|||.|||+|+. ....+..+.. .+.-+ +..+|++ +++.+. ..++.+.+..+..++|.++.|.+ .|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~e-i~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g--ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTE-LVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG--AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCE-EEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC--CC
Confidence 68999999985 2234444433 23344 5589999 777543 34445544445668999999997 89
Q ss_pred EEEEcCCCc
Q 018020 76 AVYLPLPTS 84 (362)
Q Consensus 76 ~V~i~~~~~ 84 (362)
+|+++....
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999876544
No 378
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.08 E-value=0.67 Score=41.97 Aligned_cols=88 Identities=13% Similarity=0.053 Sum_probs=54.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH-H---hcCCCCcEEEEcCCCcc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA-L---LDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e-~---l~~~~~D~V~i~~~~~~ 85 (362)
+|.|+|+|.+|...+..++.. +++.+.++++++++.+ +++++|... +..+.+..+ + .....+|+|+-++....
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~-~a~~~Ga~~-~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRE-LALSFGATA-LAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHH-HHHHcCCcE-ecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 689999999999888888776 6663334588877654 567777531 001122212 2 22235788888877665
Q ss_pred cHHHHHHHHHcCCeE
Q 018020 86 HVKWAISVAQKKKHL 100 (362)
Q Consensus 86 h~~~~~~al~~gk~V 100 (362)
-.+.+..+++.|-.+
T Consensus 200 ~~~~~~~~l~~~G~i 214 (280)
T TIGR03366 200 AVRACLESLDVGGTA 214 (280)
T ss_pred HHHHHHHHhcCCCEE
Confidence 566667777665443
No 379
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=94.07 E-value=0.29 Score=43.78 Aligned_cols=96 Identities=9% Similarity=0.090 Sum_probs=63.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--CCCcccCCHHHHhcCCCCcEEEEcCCCcc-
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--PDAKVYGSYEALLDDKDIDAVYLPLPTSM- 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~D~V~i~~~~~~- 85 (362)
|||.|+|.-.-|...+..|.+. +.++++.. +++...+.+....+.+ .+..-..++.+++...++|+|+-+|.|..
T Consensus 1 m~ILvlGGT~egr~la~~L~~~-g~~v~~s~-~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQ-GIEILVTV-TTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAA 78 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhC-CCeEEEEE-ccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHH
Confidence 4799999844599999998866 57777544 4444444443322221 01111234556677788999999999863
Q ss_pred --cHHHHHHHHHcCCeEE-EeCCC
Q 018020 86 --HVKWAISVAQKKKHLL-MEKPM 106 (362)
Q Consensus 86 --h~~~~~~al~~gk~V~-~EKP~ 106 (362)
+......|.+.|.+.+ .|.|.
T Consensus 79 ~is~~a~~a~~~~~ipylR~eR~~ 102 (256)
T TIGR00715 79 QITTNATAVCKELGIPYVRFERPP 102 (256)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCC
Confidence 6778888889997755 88774
No 380
>PRK06153 hypothetical protein; Provisional
Probab=93.97 E-value=0.22 Score=46.91 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=58.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH--------HHHcCC--CCCCcccCCHHHHhcCCCCcE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF--------AKANNF--PPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~--------~~~~~~--~~~~~~~~~~~e~l~~~~~D~ 76 (362)
+..||+|||||..|...+..|.+.+--+|+ ++|.+.-....+ .++.|. + + .+-+.+.+..-.+++
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~-LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~---K-Vevaa~rl~~in~~I 249 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIH-LFDGDDFLQHNAFRSPGAASIEELREAPK---K-VDYFKSRYSNMRRGI 249 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEE-EECCCEecccccccccccCCHhHcCCcch---H-HHHHHHHHHHhCCeE
Confidence 356999999999999999999888534444 777643111111 122221 1 1 111333333323444
Q ss_pred EEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHH-HHHHHHHcCCEEE
Q 018020 77 VYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDV-ILNACEENGVQLM 128 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~-l~~~a~~~~~~~~ 128 (362)
..+.. ....+-+ ..+ .+..++++ |.+-.+++. |.+.|.+.++++.
T Consensus 250 ~~~~~--~I~~~n~-~~L-~~~DiV~d---cvDn~~aR~~ln~~a~~~gIP~I 295 (393)
T PRK06153 250 VPHPE--YIDEDNV-DEL-DGFTFVFV---CVDKGSSRKLIVDYLEALGIPFI 295 (393)
T ss_pred EEEee--cCCHHHH-HHh-cCCCEEEE---cCCCHHHHHHHHHHHHHcCCCEE
Confidence 43332 2222222 233 45566663 555555555 5567788888765
No 381
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.96 E-value=0.41 Score=44.13 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=51.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc--CCCCCCcccCCHHHHhcC-CCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN--NFPPDAKVYGSYEALLDD-KDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~e~l~~-~~~D~V~i~~ 81 (362)
+..||+||++-||+..+-.+.++ ++.|. +++|+..+.+.+-++- |.+ +.-..|+++++.. ..|-.|++-.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~-Gf~v~-~yNRT~skvD~flaneak~~~--i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADK-GFTVC-AYNRTTSKVDEFLANEAKGTK--IIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred ccchhhhhHhhhhhhhhhccccc-CceEE-EeccchHhHHHHHHHhhcCCc--ccCCCCHHHHHHhcCCCcEEEEEe
Confidence 58999999999999998888777 78755 7999888887764432 221 3346899998764 4566666543
No 382
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=93.95 E-value=0.41 Score=45.11 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 45 KATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
...+.++++|++--+.+ ..+++.+.+ - +|++-|++..-.+.+++..+.+.||+|++.++++.++++....++....
T Consensus 173 ~L~~~~~~~Gl~~~t~v~d~~~~~~l~~-~-vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~ 250 (360)
T PRK12595 173 ILKQVADEYGLAVISEIVNPADVEVALD-Y-VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMS 250 (360)
T ss_pred HHHHHHHHcCCCEEEeeCCHHHHHHHHH-h-CCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45677889998611111 123333434 4 9999999999999999999999999999999999999999998888766
Q ss_pred cCC
Q 018020 123 NGV 125 (362)
Q Consensus 123 ~~~ 125 (362)
.|.
T Consensus 251 ~Gn 253 (360)
T PRK12595 251 QGN 253 (360)
T ss_pred CCC
Confidence 543
No 383
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=93.94 E-value=0.25 Score=47.71 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=61.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHH---hcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL---LDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~---l~~~~~D~V~i~~~~~~ 85 (362)
|||+|||.|......+..+++.++...+.+...++.. ...++.+.+ -+.|.+++ ....++|+|++......
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~~~n~g~-~~~~~~~~~-----~~~d~~~l~~~~~~~~id~vi~~~e~~l 74 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNAGT-ALLAENVVI-----DVTDIEALVAFAKEEGIDLTVVGPEAPL 74 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCCHHH-HhhccccCC-----CCCCHHHHHHHHHHhCCCEEEECCchHH
Confidence 6899999998766778788777676555453333322 222222222 13566655 44567999997554433
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHH-HHHHHHHHHcCCE
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEF-DVILNACEENGVQ 126 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~-~~l~~~a~~~~~~ 126 (362)
-..++..+-+.|.+++.-.|-+.....= ..+.++++++|++
T Consensus 75 ~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip 116 (420)
T PRK00885 75 VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIP 116 (420)
T ss_pred HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCC
Confidence 3444555556787776422211111111 2233456667766
No 384
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.92 E-value=0.51 Score=42.00 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=63.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
.-||+|||+|..|...+..|... ++.-+.++|.+.-....+.++ .|.+ + .+.+.+-|..-.+++-+.+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~---K-a~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDTVSLSNLQRQVLHDDATIGQP---K-VESARAALARINPHIAIET 106 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEECcchhhhhhcCChhhCCCh---H-HHHHHHHHHHHCCCCEEEE
Confidence 56999999999999999999876 554455777654222222222 1221 1 1122222322223332222
Q ss_pred CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 81 LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
-+.....+-+...++ +-.++++ .+.+.+.-..+.+.|.++++++..+....+
T Consensus 107 ~~~~i~~~~~~~~~~-~~DiVi~--~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~ 158 (245)
T PRK05690 107 INARLDDDELAALIA-GHDLVLD--CTDNVATRNQLNRACFAAKKPLVSGAAIRM 158 (245)
T ss_pred EeccCCHHHHHHHHh-cCCEEEe--cCCCHHHHHHHHHHHHHhCCEEEEeeeccC
Confidence 222222222333333 3455554 345566555677888889988877654433
No 385
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.88 E-value=0.36 Score=47.05 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=57.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH--HHHHHHHH-cCCCCCCccc-CCH-HHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE--KATNFAKA-NNFPPDAKVY-GSY-EALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~--~~~~~~~~-~~~~~~~~~~-~~~-~e~l~~~~~D~V~i~~~ 82 (362)
..+|.|+|.|..|...++.|.+. +.+++ +.|..+. ...++.+. .|+ .++ ... ++.+. ++|+|+++.-
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~-g~~v~-~~d~~~~~~~~~~l~~~~~gi----~~~~g~~~~~~~~--~~d~vv~spg 76 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKN-GAEVA-AYDAELKPERVAQIGKMFDGL----VFYTGRLKDALDN--GFDILALSPG 76 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCCCchhHHHHhhccCCc----EEEeCCCCHHHHh--CCCEEEECCC
Confidence 35899999999999888888877 67766 4565432 12222221 243 232 222 22333 5899998766
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018020 83 TSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~E 103 (362)
-+...+.+..|.++|.+|+.|
T Consensus 77 i~~~~p~~~~a~~~~i~v~~~ 97 (445)
T PRK04308 77 ISERQPDIEAFKQNGGRVLGD 97 (445)
T ss_pred CCCCCHHHHHHHHcCCcEEEh
Confidence 666667888888999998854
No 386
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=93.85 E-value=2.5 Score=39.13 Aligned_cols=133 Identities=13% Similarity=0.142 Sum_probs=77.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-------CHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG-------SYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~l~~~~~D~V~i~~ 81 (362)
-+|.|.|+|.+|...+..++.....+++++ ++++++.+.+ +++|.. .++. .+.++.....+|+|+-++
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~-~~~~~~~~~~-~~~g~~---~~~~~~~~~~~~i~~~~~~~~~dvvld~~ 243 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALTPATVIAV-DRSEEALKLA-ERLGAD---HVLNASDDVVEEVRELTGGRGADAVIDFV 243 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCCcEEEE-eCCHHHHHHH-HHhCCc---EEEcCCccHHHHHHHHhCCCCCCEEEEcC
Confidence 468999999999988888887744777754 4566666655 677752 1211 122334445799999999
Q ss_pred CCcccHHHHHHHHHcCCeEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 82 PTSMHVKWAISVAQKKKHLL-MEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~-~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
....+...+.+++..+-.++ +..+-..+... . . .-.+++.+. +........+..+.+++ +++.+-
T Consensus 244 g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~-~---~-~~~~~~~~~-~~~~~~~~~~~~~~~~l-~~g~l~ 309 (340)
T cd05284 244 GSDETLALAAKLLAKGGRYVIVGYGGHGRLPT-S---D-LVPTEISVI-GSLWGTRAELVEVVALA-ESGKVK 309 (340)
T ss_pred CCHHHHHHHHHHhhcCCEEEEEcCCCCCccCH-H---H-hhhcceEEE-EEecccHHHHHHHHHHH-HhCCCC
Confidence 87677788888887764443 32111011111 1 1 113344432 22222234566677777 666654
No 387
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=93.84 E-value=0.049 Score=45.33 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=46.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcc---cCCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKV---YGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-+..++|.|..+......+++.| +++++|++|.++.....- ..++ .+ .+++.+.+...++|-|+|+.|.
T Consensus 78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~--~~~~----~~lg~~~~l~~~~~~~~id~v~ial~~ 151 (175)
T PF13727_consen 78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGPE--IDGV----PVLGDLDDLPELVREHDIDEVIIALPW 151 (175)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-E--ETTE----EEE--GGGHHHHHHHHT--EEEE--TT
T ss_pred cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCchhhccCc--ccCc----eeEcCHHHHHHHHHhCCCCEEEEEcCc
Confidence 34467888877888888887765 689999999876432110 0122 23 3566666777789999999988
Q ss_pred cccH---HHHHHHHHcCCeEE
Q 018020 84 SMHV---KWAISVAQKKKHLL 101 (362)
Q Consensus 84 ~~h~---~~~~~al~~gk~V~ 101 (362)
..+. +++..|-+.|.+|.
T Consensus 152 ~~~~~i~~ii~~~~~~~v~v~ 172 (175)
T PF13727_consen 152 SEEEQIKRIIEELENHGVRVR 172 (175)
T ss_dssp S-HHHHHHHHHHHHTTT-EEE
T ss_pred cCHHHHHHHHHHHHhCCCEEE
Confidence 7653 33334444455544
No 388
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.83 E-value=0.36 Score=42.44 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=28.6
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
+..||+|||+|..|...+..|... ++.-+.++|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 356999999999999999999877 555555777644
No 389
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.82 E-value=0.18 Score=46.73 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=43.1
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCc------EEEEEEcCCH--HHHHHHHHHcC-C--C--CCCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNA------VLSAVASRSL--EKATNFAKANN-F--P--PDAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~------~vv~v~d~~~--~~~~~~~~~~~-~--~--~~~~~~~~~~e~l~~~ 72 (362)
+++||+|||+ |..|...+..+...+-+ +|+ ++|.++ ++++..+.+.. . + +++.+..+-.+-++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~-L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~-- 78 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLH-LLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK-- 78 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEE-EEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC--
Confidence 5899999998 99999887777655323 554 888854 33443333321 1 0 11223333334444
Q ss_pred CCcEEEEcCC
Q 018020 73 DIDAVYLPLP 82 (362)
Q Consensus 73 ~~D~V~i~~~ 82 (362)
+.|+|+|+.-
T Consensus 79 daDvVVitAG 88 (323)
T TIGR01759 79 DVDAALLVGA 88 (323)
T ss_pred CCCEEEEeCC
Confidence 4899998643
No 390
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=93.72 E-value=0.97 Score=38.42 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=59.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHH---HHHHHHcCCCCCCc-ccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKA---TNFAKANNFPPDAK-VYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+|.=||||. |..-....+..|+.++++ +|++++.. +..+++.+++. +. ...+..++.....+|+|+...-.
T Consensus 46 g~~VLDiGcGt-G~~al~la~~~~~~~V~g-iD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~~~~fDlV~~~~~~ 122 (187)
T PRK00107 46 GERVLDVGSGA-GFPGIPLAIARPELKVTL-VDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQEEKFDVVTSRAVA 122 (187)
T ss_pred CCeEEEEcCCC-CHHHHHHHHHCCCCeEEE-EeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCCCCCccEEEEcccc
Confidence 46789999987 432222233456788775 58887543 34444555431 22 34566665444579999974211
Q ss_pred --cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 84 --SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 84 --~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
..-.+.+.+.|+.|-.+++..+. ....++.++++.+|..+
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~~----~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKGR----DPEEEIAELPKALGGKV 164 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCC----ChHHHHHHHHHhcCceE
Confidence 11122334455555555544332 23334555555555554
No 391
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.70 E-value=0.37 Score=47.03 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=55.4
Q ss_pred EEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHH-HHHHHHHHcCCCCCCcccCC-HHHHhcCCCCcEEEEcCCCccc
Q 018020 10 RFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLE-KATNFAKANNFPPDAKVYGS-YEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 10 ~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+|-+||.|..|.. .+..|++. +.+|. ++|.... ..+.+ ++.|+. ++.. -.+.++ ++|+|+++.--...
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~-G~~v~-~~D~~~~~~~~~l-~~~gi~----~~~g~~~~~~~--~~d~vV~spgi~~~ 71 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR-GYQVS-GSDIAENATTKRL-EALGIP----IYIGHSAENLD--DADVVVVSAAIKDD 71 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC-CCeEE-EECCCcchHHHHH-HHCcCE----EeCCCCHHHCC--CCCEEEECCCCCCC
Confidence 4789999999987 78888877 78866 6786443 22333 334553 3322 223444 48988876544445
Q ss_pred HHHHHHHHHcCCeEEEe
Q 018020 87 VKWAISVAQKKKHLLME 103 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~E 103 (362)
.+.+.+|.++|.+|+.|
T Consensus 72 ~p~~~~a~~~~i~v~~~ 88 (448)
T TIGR01082 72 NPEIVEAKERGIPVIRR 88 (448)
T ss_pred CHHHHHHHHcCCceEeH
Confidence 56778888999998854
No 392
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=93.66 E-value=0.085 Score=49.46 Aligned_cols=90 Identities=7% Similarity=-0.038 Sum_probs=55.6
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcE---EEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAV---LSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~---vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
+||||||+ |-.|+.++..|..++.+. +..+.+.. .+.+ .-.++-. . ....++++.-...++|+|+.+.+..
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~--s~g~-~~~f~~~-~-~~v~~~~~~~~~~~vDivffa~g~~ 75 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQ--LGQA-APSFGGT-T-GTLQDAFDIDALKALDIIITCQGGD 75 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchh--hCCC-cCCCCCC-c-ceEEcCcccccccCCCEEEEcCCHH
Confidence 47999997 777999999998666554 44344321 1111 1112110 0 1222332221113699999999999
Q ss_pred ccHHHHHHHHHcCCe-EEEe
Q 018020 85 MHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~-V~~E 103 (362)
...++..++.++|.. +.++
T Consensus 76 ~s~~~~p~~~~aG~~~~VID 95 (366)
T TIGR01745 76 YTNEIYPKLRESGWQGYWID 95 (366)
T ss_pred HHHHHHHHHHhCCCCeEEEE
Confidence 999999999999963 4443
No 393
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.61 E-value=0.25 Score=45.74 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=27.9
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
.++.||+|||+ |.+|...+..+...+...-+.++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 45679999999 99999988888755444444578873
No 394
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=93.55 E-value=0.42 Score=47.01 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=52.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcC--CHHHHH---HHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASR--SLEKAT---NFAKANNFPPDAKVYGSYEALL---DDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~--~~~~~~---~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i 79 (362)
|||.|||.|......+..+++.| +.+++.+ .. ++.... .+..++ +. .-..|.++++ ...++|+|++
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~-~g~~Npg~~~~~~~~~~~~-~~---~~~~d~~~l~~~a~~~~id~Vi~ 75 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYAL-SSYLNPGINSVVKATGGEY-FI---GNINSPEEVKKVAKEVNPDLVVI 75 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEE-ECCCChhheeecccccCce-Ee---cCCCCHHHHHHHHHHhCCCEEEE
Confidence 58999999987777888888887 5676654 43 443211 111111 11 1134666654 4568999998
Q ss_pred cCCCcccHHHHHHHHHcCCeEE
Q 018020 80 PLPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~ 101 (362)
......-..++..+-+.|.+++
T Consensus 76 g~E~~l~~glad~l~~~Gi~v~ 97 (486)
T PRK05784 76 GPEEPLFAGVADVLREEGFPVF 97 (486)
T ss_pred CCchHHHHHHHHHHHhCCCCEE
Confidence 6544444455555556666654
No 395
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=93.45 E-value=0.38 Score=46.84 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=45.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC---HHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGS---YEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~e~l~~~~~D~V~i~~~~ 83 (362)
-|+.|||+|..|......+++.| +++++|+++.+.+.. ...|+ .++.+ +.++++..++|-|+++.|.
T Consensus 125 rrvLIIGag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~----~i~gv----pVlG~~~dl~~~v~~~~Id~ViIAlp~ 196 (442)
T TIGR03013 125 RRILVLGTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPA----YVPSE----HVIENGDGLVEYVLRHRIDEIVIALDE 196 (442)
T ss_pred CcEEEEECCHHHHHHHHHHHhCccCCeEEEEEEcCCcccc----ccCCC----cccCCHHHHHHHHHhCCCCEEEEECch
Confidence 47999999998887744444444 689999995432211 12233 35554 5556777889999999985
Q ss_pred cc
Q 018020 84 SM 85 (362)
Q Consensus 84 ~~ 85 (362)
..
T Consensus 197 ~~ 198 (442)
T TIGR03013 197 RR 198 (442)
T ss_pred hh
Confidence 43
No 396
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.43 E-value=0.19 Score=45.19 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=45.2
Q ss_pred EEEEec-cHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcC------CCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 11 FGIIGA-ADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANN------FPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 11 v~iiG~-G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~------~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
|+|||+ |.+|...+..+...+ ...-+.++|+++++++..+.+.. ....+...+|..+.+++ .|+|+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~--aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD--ADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--CCEEEECC
Confidence 589999 989998888776554 32334588998877665444321 01123345666677765 99999965
No 397
>PRK14030 glutamate dehydrogenase; Provisional
Probab=93.34 E-value=1.5 Score=42.46 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=77.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEE-------c---CCHHHH---HHHHHHcC---------CCCCCcccCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVA-------S---RSLEKA---TNFAKANN---------FPPDAKVYGS 64 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~-------d---~~~~~~---~~~~~~~~---------~~~~~~~~~~ 64 (362)
+..||+|=|+|+.|...+..|.+. +++|++|. | .+.++. .+..++.+ . ++++.. +
T Consensus 227 ~g~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~-~ga~~i-~ 303 (445)
T PRK14030 227 KGKTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKF-PGSTFF-A 303 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcC-CCCEEc-C
Confidence 357999999999999988888776 89999974 4 355552 22322222 1 122322 4
Q ss_pred HHHHhcCCCCcEEEE-cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 65 YEALLDDKDIDAVYL-PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 65 ~~e~l~~~~~D~V~i-~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.++++.. ++|+.+= ++.+.-+.+-+....+++..+++|--=..+..+|.+ ..+++|+.+..
T Consensus 304 ~~~~~~~-~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~---iL~~rGI~~vP 365 (445)
T PRK14030 304 GKKPWEQ-KVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAID---KFIAAKQLFAP 365 (445)
T ss_pred Cccceec-cccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHH---HHHHCCCEEeC
Confidence 5667764 7998885 577778888888888889999999633333444444 44667777643
No 398
>PRK05086 malate dehydrogenase; Provisional
Probab=93.30 E-value=0.27 Score=45.47 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=43.0
Q ss_pred eEEEEEec-cHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHc-CCCCCCcc----cCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKAN-NFPPDAKV----YGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~----~~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+ |.+|...+..+.. .+....+.++|+++. ++..+-++ ..+....+ .+++.+.++ ++|+|+++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEcC
Confidence 68999999 9999988877744 444555667887643 22111111 11111112 246555565 499999976
Q ss_pred CC
Q 018020 82 PT 83 (362)
Q Consensus 82 ~~ 83 (362)
-.
T Consensus 78 G~ 79 (312)
T PRK05086 78 GV 79 (312)
T ss_pred CC
Confidence 54
No 399
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=93.28 E-value=0.67 Score=45.56 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=54.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH---HhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA---LLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e---~l~~~~~D~V~i~~~~ 83 (362)
-++.|||+|..|...+..+++.| +++++|++|.++.. . .-.|+ .++.+.++ ......+|+ +|+.|.
T Consensus 147 rrvLIIGaG~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~-~---~i~gv----PVlg~~d~l~~~~~~~~v~v-IIAip~ 217 (476)
T PRK15204 147 KKTIILGSGQNARGAYSALQSEEMMGFDVIAFFDTDASD-A---EINML----PVIKDTEIIWDLNRTGDVHY-ILAYEY 217 (476)
T ss_pred CeEEEEECCHHHHHHHHHHHhCccCCcEEEEEEcCCccc-c---ccCCC----cccCCHHHHHHHHHhCCCcE-EEEeCc
Confidence 57999999999999999988765 68999999976542 1 12344 35555543 333445674 777775
Q ss_pred cc---cHHHHHHHHHcCC
Q 018020 84 SM---HVKWAISVAQKKK 98 (362)
Q Consensus 84 ~~---h~~~~~~al~~gk 98 (362)
.. ..+++..+.+.|.
T Consensus 218 ~~~~~r~~il~~l~~~gv 235 (476)
T PRK15204 218 TELEKTHFWLRELSKHHC 235 (476)
T ss_pred CcHHHHHHHHHHHhhcCC
Confidence 53 3456667777675
No 400
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.27 E-value=0.14 Score=47.57 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=43.5
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCC------cEEEEEEcCCHH--HHHHHHHHc-CC----CCCCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPN------AVLSAVASRSLE--KATNFAKAN-NF----PPDAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~------~~vv~v~d~~~~--~~~~~~~~~-~~----~~~~~~~~~~~e~l~~~ 72 (362)
+++||+|+|+ |++|...+..+...+- .+|+ +.|+++. .++..+-++ +. ..+.....++.+.+++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~-L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~- 78 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILH-LLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD- 78 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEE-EEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC-
Confidence 4799999999 9999998888866432 3666 5677442 222211111 00 0122335666666764
Q ss_pred CCcEEEEcC
Q 018020 73 DIDAVYLPL 81 (362)
Q Consensus 73 ~~D~V~i~~ 81 (362)
+|+|+++.
T Consensus 79 -aDiVI~tA 86 (325)
T cd01336 79 -VDVAILVG 86 (325)
T ss_pred -CCEEEEeC
Confidence 99999853
No 401
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.23 E-value=0.68 Score=43.49 Aligned_cols=90 Identities=12% Similarity=-0.006 Sum_probs=57.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC---CHHHHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR---SLEKATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~---~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-+|.|+|+|.+|...+..++.. +++++++ ++ ++++.+ +++++|... ..+ +++.+......+|+|+.++..
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~-~~~~~~~~~~~-~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g~ 248 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR-GFEVYVL-NRRDPPDPKAD-IVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATGV 248 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEE-ecCCCCHHHHH-HHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcCC
Confidence 4789999999999888888776 6776654 44 555544 667787531 111 122221122368999999987
Q ss_pred cccHHHHHHHHHcC-CeEEEe
Q 018020 84 SMHVKWAISVAQKK-KHLLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~g-k~V~~E 103 (362)
......+..+++.| +=|++-
T Consensus 249 ~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 249 PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred HHHHHHHHHHccCCcEEEEEe
Confidence 66667777777776 444444
No 402
>PRK14852 hypothetical protein; Provisional
Probab=93.23 E-value=0.62 Score=49.13 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=56.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-------------------HHHHHHH---HHcCCCCCCcc--c
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-------------------EKATNFA---KANNFPPDAKV--Y 62 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-------------------~~~~~~~---~~~~~~~~~~~--~ 62 (362)
+.-||+|||+|..|..++..|... ++.-+.++|.+. .+++..+ .+.| |.+++ +
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAra-GVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~IN--P~v~I~~~ 407 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLART-GIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVN--PFLDIRSF 407 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHC--CCCeEEEE
Confidence 357899999999999999988776 333334555321 1222222 2222 22221 2
Q ss_pred ------CCHHHHhcCCCCcEEEEcCCCcc---cHHHHHHHHHcCCeEEEeCC
Q 018020 63 ------GSYEALLDDKDIDAVYLPLPTSM---HVKWAISVAQKKKHLLMEKP 105 (362)
Q Consensus 63 ------~~~~e~l~~~~~D~V~i~~~~~~---h~~~~~~al~~gk~V~~EKP 105 (362)
++.+++++ ++|+|+-++.+.. ...+...|.+.|++++..-+
T Consensus 408 ~~~I~~en~~~fl~--~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 408 PEGVAAETIDAFLK--DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred ecCCCHHHHHHHhh--CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 34566665 4888888777632 35556677788887765433
No 403
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.14 E-value=0.53 Score=42.89 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=25.4
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
||+|||+|..|...++.|... ++.=+.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-GVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-GVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCeEEEECCC
Confidence 689999999999999998766 55545577754
No 404
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=93.12 E-value=0.26 Score=46.76 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=44.6
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCC------cEEEEE-EcCCHHHHHHHHHHcC--C-C--CCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPN------AVLSAV-ASRSLEKATNFAKANN--F-P--PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~------~~vv~v-~d~~~~~~~~~~~~~~--~-~--~~~~~~~~~~e~l~~~~ 73 (362)
+++||+|||+ |..|...+..+....- +.|+-+ +|+++++++..+-+.. . + ..+.+..+-.+-++ +
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~k--d 120 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFE--D 120 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhC--C
Confidence 4899999999 9999988777654432 234323 4888887765544421 0 0 12232333334444 4
Q ss_pred CcEEEEcCC
Q 018020 74 IDAVYLPLP 82 (362)
Q Consensus 74 ~D~V~i~~~ 82 (362)
.|+|+|+..
T Consensus 121 aDIVVitAG 129 (387)
T TIGR01757 121 ADWALLIGA 129 (387)
T ss_pred CCEEEECCC
Confidence 899999543
No 405
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.06 E-value=0.32 Score=44.40 Aligned_cols=96 Identities=28% Similarity=0.248 Sum_probs=56.5
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||.|+|+ |.+|......+... +.+++++ ++. ++++ .-.+.+.+++...++|+|+.+.-... .
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~-~r~---------~~dl----~d~~~~~~~~~~~~pd~Vin~aa~~~-~ 64 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIAT-SRS---------DLDL----TDPEAVAKLLEAFKPDVVINCAAYTN-V 64 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEE-STT---------CS-T----TSHHHHHHHHHHH--SEEEE-------H
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEe-Cch---------hcCC----CCHHHHHHHHHHhCCCeEeccceeec-H
Confidence 79999995 88999999999874 7888876 554 2332 22345566677667999998753210 0
Q ss_pred HHHHHHHHcCCeEEEeCC----CCCCHHHHHHHHHHHHHcCCEE-EEeee
Q 018020 88 KWAISVAQKKKHLLMEKP----MALNVAEFDVILNACEENGVQL-MDGTM 132 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP----~~~~~~~~~~l~~~a~~~~~~~-~v~~~ 132 (362)
. .||+- ...+......|.+.|++.|.++ ++...
T Consensus 65 ---~---------~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 65 ---D---------ACEKNPEEAYAINVDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp ---H---------HHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEG
T ss_pred ---H---------hhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeecc
Confidence 0 11111 1235567778888998888765 34443
No 406
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=93.06 E-value=1.6 Score=36.91 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=64.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHH---HHHHHHcCCCCCCc-ccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKA---TNFAKANNFPPDAK-VYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+|.=||||. |..-.......+..+++ .+|.+++.. ++.+++.+++ ++. ...|.+++.....+|+|+...-.
T Consensus 43 ~~~vLDiGcGt-G~~s~~la~~~~~~~V~-~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGA-GFPGIPLAIARPELKLT-LLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRALA 119 (181)
T ss_pred CCeEEEecCCC-CccHHHHHHHCCCCeEE-EEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehhhh
Confidence 45788999987 43222222334567766 568887643 3444555553 222 34677776445679988754311
Q ss_pred c--ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 84 S--MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 84 ~--~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
. .-.+.+...|+.|-.+++..+ .....++..+.+.+...|..
T Consensus 120 ~~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 120 SLNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred CHHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHHhhhhcCce
Confidence 0 112334455666666666654 45667777776666666654
No 407
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.02 E-value=0.25 Score=47.66 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=46.5
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcC-------CC-cEEEEEEcCCHHHHHHHHHHcC--C-C--CCCcccCCHHHHhcC
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLA-------PN-AVLSAVASRSLEKATNFAKANN--F-P--PDAKVYGSYEALLDD 71 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~-------~~-~~vv~v~d~~~~~~~~~~~~~~--~-~--~~~~~~~~~~e~l~~ 71 (362)
.+++||+|||+ |.+|...+..+... +- .+|+ +.|+++++++..+-++. . + ..+.+..+-.+-++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLv-liD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k- 175 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLL-GSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ- 175 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEE-EEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC-
Confidence 35799999999 99999887776543 22 3555 77999888776554431 1 0 12232233334444
Q ss_pred CCCcEEEEcCC
Q 018020 72 KDIDAVYLPLP 82 (362)
Q Consensus 72 ~~~D~V~i~~~ 82 (362)
+.|+|+|...
T Consensus 176 -daDiVVitAG 185 (444)
T PLN00112 176 -DAEWALLIGA 185 (444)
T ss_pred -cCCEEEECCC
Confidence 3899998644
No 408
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.00 E-value=0.67 Score=45.04 Aligned_cols=87 Identities=9% Similarity=-0.013 Sum_probs=55.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH--HHHHHHHcCCCCCCcccC--CHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK--ATNFAKANNFPPDAKVYG--SYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~--~~~~~~~~~~~~~~~~~~--~~~e~l~~~~~D~V~i~~~~ 83 (362)
.-+|.+||.|..|..-+..+++. +.++. ++|..... ...+. + |++ ++. ...+.+. +.|+|+.+.--
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~-G~~v~-~~D~~~~~~~~~~l~-~-g~~----~~~~~~~~~~~~--~~d~vv~spgi 75 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLAR-GVTPR-VIDTRITPPGLDKLP-E-NVE----RHTGSLNDEWLL--AADLIVASPGI 75 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-CCeEE-EEcCCCCchhHHHHh-c-CCE----EEeCCCCHHHhc--CCCEEEECCCC
Confidence 34799999999999888777766 67766 46653321 22231 1 542 222 1223343 47877665544
Q ss_pred cccHHHHHHHHHcCCeEEEeC
Q 018020 84 SMHVKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EK 104 (362)
+.+.+.+.+|.++|.+|+.|-
T Consensus 76 ~~~~~~~~~a~~~g~~v~~~~ 96 (438)
T PRK03806 76 ALAHPSLSAAADAGIEIVGDI 96 (438)
T ss_pred CCCCHHHHHHHHCCCeEEEHH
Confidence 455678888999999998863
No 409
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=92.97 E-value=2.3 Score=40.07 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=57.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----CH----HHHhcCCCCcEEEEcC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----SY----EALLDDKDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~----~e~l~~~~~D~V~i~~ 81 (362)
+|.|+|+|.+|...+..++.. +...+.++++++++.+.+ +++|.. .+.-+. ++ .++.. ..+|+|+-++
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~-G~~~v~~~~~~~~~~~~~-~~~g~~-~~v~~~~~~~~~~~~l~~~~~-~~~d~vid~~ 261 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAA-GASRIIAVDINKDKFEKA-KQLGAT-ECINPRDQDKPIVEVLTEMTD-GGVDYAFEVI 261 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHH-HHhCCC-eecccccccchHHHHHHHHhC-CCCcEEEECC
Confidence 678889999999888877766 666555677777776655 677753 111111 22 12333 4699999988
Q ss_pred CCcccHHHHHHHHH-cCCeE
Q 018020 82 PTSMHVKWAISVAQ-KKKHL 100 (362)
Q Consensus 82 ~~~~h~~~~~~al~-~gk~V 100 (362)
........+.++++ .+-.+
T Consensus 262 g~~~~~~~~~~~l~~~~G~~ 281 (365)
T cd05279 262 GSADTLKQALDATRLGGGTS 281 (365)
T ss_pred CCHHHHHHHHHHhccCCCEE
Confidence 76667777888887 65443
No 410
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=92.94 E-value=4.4 Score=37.56 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=56.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHH-HhcCCCCcEEEEcCCCccc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEA-LLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e-~l~~~~~D~V~i~~~~~~h 86 (362)
+|.|.|+|.+|......++.. +++++.+ ++++++.+ +++++|.. .+.-+ .++.+ +.....+|+++-++.....
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~-G~~vi~~-~~~~~~~~-~~~~~g~~-~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~ 241 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKM-GFRTVAI-SRGSDKAD-LARKLGAH-HYIDTSKEDVAEALQELGGAKLILATAPNAKA 241 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEE-eCChHHHH-HHHHcCCc-EEecCCCccHHHHHHhcCCCCEEEECCCchHH
Confidence 689999999999888888877 6776654 55666555 44777752 10011 12322 3333468999987765667
Q ss_pred HHHHHHHHHcCCeE
Q 018020 87 VKWAISVAQKKKHL 100 (362)
Q Consensus 87 ~~~~~~al~~gk~V 100 (362)
.+.+.++++.+-++
T Consensus 242 ~~~~~~~l~~~G~~ 255 (333)
T cd08296 242 ISALVGGLAPRGKL 255 (333)
T ss_pred HHHHHHHcccCCEE
Confidence 77778888776443
No 411
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.93 E-value=0.36 Score=44.48 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=49.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----CC----CcccCCHHHHhcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----PD----AKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~~----~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|||.|+|+|.+|..++-.|.+.+ .. |-+.-|++. ++++.+. |+. .+ .....+-.+.+ .+.|+|+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~-V~~~~R~~~-~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~--~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HD-VTLLVRSRR-LEALKKK-GLRIEDEGGNFTTPVVAATDAEAL--GPADLVIVT 74 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-Ce-EEEEecHHH-HHHHHhC-CeEEecCCCccccccccccChhhc--CCCCEEEEE
Confidence 68999999999999988888885 33 445556554 6776654 321 00 01111111222 258999999
Q ss_pred CCCcccHHHHHHHH
Q 018020 81 LPTSMHVKWAISVA 94 (362)
Q Consensus 81 ~~~~~h~~~~~~al 94 (362)
+-...-.+.+....
T Consensus 75 vKa~q~~~al~~l~ 88 (307)
T COG1893 75 VKAYQLEEALPSLA 88 (307)
T ss_pred eccccHHHHHHHhh
Confidence 88866555554443
No 412
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=92.92 E-value=0.94 Score=41.64 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=61.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
=+|.|.|+|.+|...+..++.. +++++++ +.++++.+.+ +++|.. ...++++......+|+++.++......+
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~-~~~~~~~~~~-~~~g~~----~~~~~~~~~~~~~~d~vid~~g~~~~~~ 229 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALT-GPDVVLV-GRHSEKLALA-RRLGVE----TVLPDEAESEGGGFDVVVEATGSPSGLE 229 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEE-cCCHHHHHHH-HHcCCc----EEeCccccccCCCCCEEEECCCChHHHH
Confidence 4688899999999888888877 7776644 5566666544 457753 2222233344457999999988777788
Q ss_pred HHHHHHHcCCeEEE
Q 018020 89 WAISVAQKKKHLLM 102 (362)
Q Consensus 89 ~~~~al~~gk~V~~ 102 (362)
.+.++++.+-++.+
T Consensus 230 ~~~~~l~~~g~~v~ 243 (319)
T cd08242 230 LALRLVRPRGTVVL 243 (319)
T ss_pred HHHHHhhcCCEEEE
Confidence 88889988877765
No 413
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.85 E-value=1.3 Score=40.95 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=59.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-----HHh---cCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-----ALL---DDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----e~l---~~~~~D~V~i~ 80 (362)
-.|+++|+|.+|..-+..++.. +...+..+|.++++.+ ++++||-. .++++.+ +.+ .+..+|.++.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~-~A~~fGAT---~~vn~~~~~~vv~~i~~~T~gG~d~~~e~ 261 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLE-LAKKFGAT---HFVNPKEVDDVVEAIVELTDGGADYAFEC 261 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHH-HHHhcCCc---eeecchhhhhHHHHHHHhcCCCCCEEEEc
Confidence 4689999999999888887766 5545556789887554 67888864 3343322 222 22367777777
Q ss_pred CCCcccHHHHHHHHHcC-CeEEEeC
Q 018020 81 LPTSMHVKWAISVAQKK-KHLLMEK 104 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g-k~V~~EK 104 (362)
+-+..+...+.++...+ +-|++--
T Consensus 262 ~G~~~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 262 VGNVEVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred cCCHHHHHHHHHHHhcCCeEEEEec
Confidence 77766666666666443 5555543
No 414
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.84 E-value=0.77 Score=39.40 Aligned_cols=116 Identities=11% Similarity=0.193 Sum_probs=62.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH---------cCCCCCCcccCCHHHHhcC--CCCcE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA---------NNFPPDAKVYGSYEALLDD--KDIDA 76 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~e~l~~--~~~D~ 76 (362)
..||.|||+|..|...++.|... ++.-+.++|.+.-....+.++ .|.+ ++ ....+-|+. +++.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~---Ka-~~~~~~L~~lNp~v~i 93 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN---RA-AASYEFLQELNPNVKL 93 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCcCChhcCcccEecccchhhcCch---HH-HHHHHHHHHHCCCCEE
Confidence 57899999999999999999766 666566888654222222221 1111 11 111222222 23333
Q ss_pred EEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 77 VYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
..+......+.+.....++ ...|++. ...+.+....+-+.|+++++++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~dvVi~--~~d~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 94 SIVEEDSLSNDSNIEEYLQ-KFTLVIA--TEENYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred EEEecccccchhhHHHHHh-CCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3332222112233333333 3345543 23456777778888888888876654
No 415
>PRK05442 malate dehydrogenase; Provisional
Probab=92.83 E-value=0.17 Score=47.00 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=40.9
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCC------cEEEEEEcCCHH--HHHHHHHHc-C----CCCCCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPN------AVLSAVASRSLE--KATNFAKAN-N----FPPDAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~------~~vv~v~d~~~~--~~~~~~~~~-~----~~~~~~~~~~~~e~l~~~ 72 (362)
.+.||+|||+ |.+|...+..+....- .+|+ ++|.++. +++..+.+. + ....+.+..+..+-++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~-LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~-- 79 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQ-LLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFK-- 79 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEE-EEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhC--
Confidence 5789999998 9999987766543322 2444 7887432 233222211 0 0012233433334444
Q ss_pred CCcEEEEcCC
Q 018020 73 DIDAVYLPLP 82 (362)
Q Consensus 73 ~~D~V~i~~~ 82 (362)
+.|+|+|+.-
T Consensus 80 daDiVVitaG 89 (326)
T PRK05442 80 DADVALLVGA 89 (326)
T ss_pred CCCEEEEeCC
Confidence 4899998643
No 416
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.78 E-value=4.1 Score=39.14 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=56.2
Q ss_pred EEEEEe-ccHHHHHHHHHHhcCC-Cc-EEEEEEcCCHHHHHHHHHHcCCCC---CCc--cc-----CCHHH----HhcCC
Q 018020 10 RFGIIG-AADIARKLSRAITLAP-NA-VLSAVASRSLEKATNFAKANNFPP---DAK--VY-----GSYEA----LLDDK 72 (362)
Q Consensus 10 ~v~iiG-~G~~g~~~~~~~~~~~-~~-~vv~v~d~~~~~~~~~~~~~~~~~---~~~--~~-----~~~~e----~l~~~ 72 (362)
+|.|+| +|.+|...+..++... +. +++ +.|+++++.+.+.+.++... ++. ++ +++.+ +....
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi-~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGPIGPSLLV-VTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcccCCceEE-EEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 789998 6999998888877653 33 454 56888887765544332100 111 11 23333 23334
Q ss_pred CCcEEEEcCCCcccHHHHHHHHHc-CCeEE
Q 018020 73 DIDAVYLPLPTSMHVKWAISVAQK-KKHLL 101 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~~~~~~al~~-gk~V~ 101 (362)
.+|+|+.++........+.++++. |+-|+
T Consensus 257 g~D~vid~~g~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 257 GFDDVFVFVPVPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCEEEEcCCCHHHHHHHHHHhccCCeEEE
Confidence 689999998776777778888874 44443
No 417
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.77 E-value=0.16 Score=47.12 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=41.9
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcE-----EEEEEcCCHH--HHHHHHHHcC--C-C--CCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAV-----LSAVASRSLE--KATNFAKANN--F-P--PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~-----vv~v~d~~~~--~~~~~~~~~~--~-~--~~~~~~~~~~e~l~~~~ 73 (362)
+++||+|||+ |.+|...+..+....-+. -+.++|.+++ +++..+.+.. . + +.+.+..+..+-++ +
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--d 78 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK--D 78 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC--C
Confidence 4789999999 999998777665432232 3448888433 2333322221 0 0 11233333334444 4
Q ss_pred CcEEEEcCC
Q 018020 74 IDAVYLPLP 82 (362)
Q Consensus 74 ~D~V~i~~~ 82 (362)
.|+|+|+.-
T Consensus 79 aDivvitaG 87 (322)
T cd01338 79 ADWALLVGA 87 (322)
T ss_pred CCEEEEeCC
Confidence 899999643
No 418
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.75 E-value=0.41 Score=39.90 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=47.8
Q ss_pred ceeEEEEEeccHH-HHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADI-ARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~-g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..-||.|||+|.| |...+..|.+. +++ +.+++++. +++.+.+.. .|+|+.+|+...
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~-V~v~~r~~-------------------~~l~~~l~~--aDiVIsat~~~~ 99 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR-NAT-VTVCHSKT-------------------KNLKEHTKQ--ADIVIVAVGKPG 99 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC-CCE-EEEEECCc-------------------hhHHHHHhh--CCEEEEcCCCCc
Confidence 3468999999987 77788888876 566 44777652 245566664 999999998853
Q ss_pred cHHHHHHHHHcCCeEEEe
Q 018020 86 HVKWAISVAQKKKHLLME 103 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~E 103 (362)
-+-...++.| .++++
T Consensus 100 --ii~~~~~~~~-~viID 114 (168)
T cd01080 100 --LVKGDMVKPG-AVVID 114 (168)
T ss_pred --eecHHHccCC-eEEEE
Confidence 2333444444 44444
No 419
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.74 E-value=0.34 Score=44.50 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=40.9
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|+|||+|.+|...+..+....-.+ +.++|+++++++..+-+ .+.........|+++ +. +.|+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~e-V~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~--dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGD-VVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IA--GSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcE-EEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hC--CCCEEEEecC
Confidence 689999999998877776443225 44889987755422211 111111222456665 44 4899998653
No 420
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=92.73 E-value=0.41 Score=44.32 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=50.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-----------HHHHHHHHHHcCCCCCCcccCC-----HHHHhcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-----------LEKATNFAKANNFPPDAKVYGS-----YEALLDDK 72 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-----------~~~~~~~~~~~~~~~~~~~~~~-----~~e~l~~~ 72 (362)
|||+++|++.++...+..|.+. +.++++|+... ....+.+|.+.|+| +....+ .-+.+.+.
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~-~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ip--v~~~~~~~~~~~~~~l~~~ 77 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED-NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIP--VFQPEKQRQLEELPLVREL 77 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCC--EEecCCCCcHHHHHHHHhh
Confidence 5899999999999988888765 58899988532 12378889999987 111222 22334556
Q ss_pred CCcEEEEcCC
Q 018020 73 DIDAVYLPLP 82 (362)
Q Consensus 73 ~~D~V~i~~~ 82 (362)
++|+++++.-
T Consensus 78 ~~Dliv~~~~ 87 (313)
T TIGR00460 78 KPDVIVVVSF 87 (313)
T ss_pred CCCEEEEccc
Confidence 8999988754
No 421
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=92.65 E-value=2.5 Score=36.31 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=43.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH---cCCCCCCc-ccCCH-HHH---hcCCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA---NNFPPDAK-VYGSY-EAL---LDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~---~~~~~~~~-~~~~~-~e~---l~~~~~D~V~i 79 (362)
..+|.=||||. |.......+..|+.+++ .+|.+++..+...+. .+.+ ++. +..|. +.+ +....+|+|++
T Consensus 41 ~~~VLDiGcGt-G~~~~~la~~~p~~~v~-gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGK-GEFLVEMAKANPDINFI-GIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCC-CHHHHHHHHHCCCccEE-EEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEE
Confidence 46789999997 54433334455777766 578888776655443 2332 122 34565 443 34457999987
Q ss_pred cCC
Q 018020 80 PLP 82 (362)
Q Consensus 80 ~~~ 82 (362)
.-|
T Consensus 118 ~~~ 120 (202)
T PRK00121 118 NFP 120 (202)
T ss_pred ECC
Confidence 644
No 422
>PRK14851 hypothetical protein; Provisional
Probab=92.64 E-value=0.78 Score=46.96 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=58.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-------------------CHHHHHHHHHHc-CCCCCCc--cc--
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-------------------SLEKATNFAKAN-NFPPDAK--VY-- 62 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-------------------~~~~~~~~~~~~-~~~~~~~--~~-- 62 (362)
+.-||+|||+|..|...+..|... ++.-+-++|. ...+++.+++.. .+.|.+. .+
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~-GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRT-GIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA 120 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHh-CCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 357999999999999999988776 3322334443 112333333321 1112211 11
Q ss_pred ----CCHHHHhcCCCCcEEEEcCCCc---ccHHHHHHHHHcCCeEEEeC
Q 018020 63 ----GSYEALLDDKDIDAVYLPLPTS---MHVKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 63 ----~~~~e~l~~~~~D~V~i~~~~~---~h~~~~~~al~~gk~V~~EK 104 (362)
++.+++++. +|+|+-++.+. ....+...|.+.|+++++--
T Consensus 121 ~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 121 GINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred CCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 345667764 89999888764 23456667888899888664
No 423
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.63 E-value=2.1 Score=38.54 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 45 KATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
..++.++++|++--+.++ .+.+.+ .+- +|++-|++..-.+.++..++.+.||+|++.++.+.++++.....+..+.
T Consensus 82 ~l~~~~~~~Gl~~~te~~d~~~~~~l-~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~ 159 (266)
T PRK13398 82 ILKEVGDKYNLPVVTEVMDTRDVEEV-ADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMS 159 (266)
T ss_pred HHHHHHHHcCCCEEEeeCChhhHHHH-HHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHh
Confidence 356678889986211111 233333 333 9999999999999999999999999999999999999999999988887
Q ss_pred cCC
Q 018020 123 NGV 125 (362)
Q Consensus 123 ~~~ 125 (362)
.|-
T Consensus 160 ~Gn 162 (266)
T PRK13398 160 EGN 162 (266)
T ss_pred cCC
Confidence 544
No 424
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=92.63 E-value=0.33 Score=44.46 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=47.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.+||+|+|.+|...+..++.. +..+++-.+..+. +.++.+|+. +-+++|++.. .|++.+-+|-
T Consensus 148 TLgvlG~GrIGseVA~r~k~~-gm~vI~~dpi~~~---~~~~a~gvq-----~vsl~Eil~~--ADFitlH~PL 210 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAM-GMHVIGYDPITPM---ALAEAFGVQ-----LVSLEEILPK--ADFITLHVPL 210 (406)
T ss_pred EEEEeecccchHHHHHHHHhc-CceEEeecCCCch---HHHHhccce-----eeeHHHHHhh--cCEEEEccCC
Confidence 479999999999999999877 6776754443332 334566753 6799999996 8999987663
No 425
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.61 E-value=0.86 Score=42.57 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
.++.++++|++--+.+ ..+.+.+.+ - +|++-|++.+-...+++.++.+.||+|++-++++.+++|....++.....
T Consensus 157 L~~~~~e~Gl~~~tev~d~~~v~~~~~-~-~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~ 234 (352)
T PRK13396 157 LAAAREATGLGIITEVMDAADLEKIAE-V-ADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAA 234 (352)
T ss_pred HHHHHHHcCCcEEEeeCCHHHHHHHHh-h-CCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 4566778898611111 123333333 3 99999999999999999999999999999999999999998888877655
Q ss_pred C
Q 018020 124 G 124 (362)
Q Consensus 124 ~ 124 (362)
|
T Consensus 235 G 235 (352)
T PRK13396 235 G 235 (352)
T ss_pred C
Confidence 4
No 426
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=92.60 E-value=0.39 Score=46.39 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=49.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CHHHHHHHHHHcCCCCCCcccCCHHHH---hcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SLEKATNFAKANNFPPDAKVYGSYEAL---LDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~e~---l~~~~~D~V~i~~~~~ 84 (362)
|||+|||.|..+...+..+++.+.. +..++++ ++..+.. .+..-+. .-+.|.+.+ ....++|+|+......
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~---~~~~d~~~l~~~~~~~~id~vi~~~e~~ 75 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLV-KYVYVAPGNAGTARL-AKNKNVA---ISITDIEALVEFAKKKKIDLAVIGPEAP 75 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCc-cEEEEECCCHHHhhh-ccccccc---CCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6899999999888888888877532 2223343 3332222 2111111 113565554 4456799988654333
Q ss_pred ccHHHHHHHHHcCCeEE
Q 018020 85 MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~ 101 (362)
....++..+-+.|.+++
T Consensus 76 l~~~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 76 LVLGLVDALEEAGIPVF 92 (423)
T ss_pred HHHHHHHHHHHCCCeEE
Confidence 33344555556676655
No 427
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=92.57 E-value=0.81 Score=42.06 Aligned_cols=102 Identities=10% Similarity=0.182 Sum_probs=63.9
Q ss_pred CceeEEEEEeccHHHHHHHHHHhc----CCCc-EEEE--EEcCCH-HHHHHHHHH-------------cCCCCCCcccCC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITL----APNA-VLSA--VASRSL-EKATNFAKA-------------NNFPPDAKVYGS 64 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~----~~~~-~vv~--v~d~~~-~~~~~~~~~-------------~~~~~~~~~~~~ 64 (362)
+.++||.+||.|.+|...+..+.. +|.+ .-|. +++-.. .+.+.+.+- ..+|+++.+.+|
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 457999999999999987776532 3221 1111 222100 001222221 234567778899
Q ss_pred HHHHhcCCCCcEEEEcCCCcccHHHHHHHH---HcCCe-EEEeCCCCCC
Q 018020 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVA---QKKKH-LLMEKPMALN 109 (362)
Q Consensus 65 ~~e~l~~~~~D~V~i~~~~~~h~~~~~~al---~~gk~-V~~EKP~~~~ 109 (362)
+.+.+.+ .|+++..+|+..-..++.... +.+.+ |-|=|-+...
T Consensus 99 l~ea~~d--ADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~ 145 (372)
T KOG2711|consen 99 LVEAAKD--ADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVG 145 (372)
T ss_pred HHHHhcc--CCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceecc
Confidence 9999886 999999999999888887765 33433 4466665544
No 428
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.56 E-value=0.71 Score=44.89 Aligned_cols=86 Identities=8% Similarity=0.016 Sum_probs=54.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCC-cEEEEEEcCCHH--HHHHHHHHcCCCCCCccc-CC-HHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPN-AVLSAVASRSLE--KATNFAKANNFPPDAKVY-GS-YEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~-~~vv~v~d~~~~--~~~~~~~~~~~~~~~~~~-~~-~~e~l~~~~~D~V~i~~~~ 83 (362)
.||.|||.|..|..-+..+.+..+ ++|. ++|.... ..+.+. + |+. ++ .. -.+.+. ++|+|+++.--
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~l~-~-g~~----~~~g~~~~~~~~--~~d~vV~SpgI 78 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQLP-E-DVE----LHSGGWNLEWLL--EADLVVTNPGI 78 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHHhh-c-CCE----EEeCCCChHHhc--cCCEEEECCCC
Confidence 579999999999988777776654 7766 5775432 122232 2 542 32 21 223343 58988776554
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018020 84 SMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~E 103 (362)
+...+.+.+|.++|++|+.|
T Consensus 79 ~~~~p~~~~a~~~gi~i~~~ 98 (438)
T PRK04663 79 ALATPEIQQVLAAGIPVVGD 98 (438)
T ss_pred CCCCHHHHHHHHCCCcEEEH
Confidence 55556788888999988854
No 429
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.55 E-value=0.77 Score=45.27 Aligned_cols=45 Identities=16% Similarity=0.015 Sum_probs=36.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF 55 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~ 55 (362)
.-||+|+|+|.+|...+..++.. +.+ |-++|+++++.+ .++++|.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~-V~a~D~~~~rle-~aeslGA 209 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAI-VRAFDTRPEVAE-QVESMGA 209 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCE-EEEEeCCHHHHH-HHHHcCC
Confidence 57999999999999999988888 566 558999988766 4556774
No 430
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=92.45 E-value=1.3 Score=39.64 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=58.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcE-EEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAV-LSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~-vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
-++.|.|+|.+|...+..++.. ++. +++ .++++++.+ +++++|... .+...-+..+...++|+|+.++....+.
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~-~~~~~~~~~-~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~~~~~~~~~ 173 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAA-GAREVVG-VDPDAARRE-LAEALGPAD--PVAADTADEIGGRGADVVIEASGSPSAL 173 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCcEEE-ECCCHHHHH-HHHHcCCCc--cccccchhhhcCCCCCEEEEccCChHHH
Confidence 4688889999998888887776 566 654 466777766 777777211 1222222233445799999988777777
Q ss_pred HHHHHHHHcCCeEE
Q 018020 88 KWAISVAQKKKHLL 101 (362)
Q Consensus 88 ~~~~~al~~gk~V~ 101 (362)
+.+..+++.+-.++
T Consensus 174 ~~~~~~l~~~g~~~ 187 (277)
T cd08255 174 ETALRLLRDRGRVV 187 (277)
T ss_pred HHHHHHhcCCcEEE
Confidence 77888887764443
No 431
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.42 E-value=1.7 Score=37.45 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=38.5
Q ss_pred ceeEEEEEec--cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC
Q 018020 7 AAIRFGIIGA--ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP 56 (362)
Q Consensus 7 ~~~~v~iiG~--G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~ 56 (362)
.+-+|.|.|| |.||...+..+.+. ++.++| +.|..++...++.++|+.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~-G~~V~A-taR~~e~M~~L~~~~gl~ 55 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARN-GYLVYA-TARRLEPMAQLAIQFGLK 55 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhC-CeEEEE-EccccchHhhHHHhhCCe
Confidence 4678999999 67888888888766 788774 668889999999888864
No 432
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=92.41 E-value=4.7 Score=37.61 Aligned_cols=87 Identities=15% Similarity=0.069 Sum_probs=57.7
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCH-HHH---hcCCCCcEEEEcC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSY-EAL---LDDKDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~-~e~---l~~~~~D~V~i~~ 81 (362)
+|.|.|+|..|...+..++.. ++.++.+.++++++. .+++++|.. .++ .++ +++ .....+|+|+-++
T Consensus 177 ~vlI~g~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~-~~~~~~g~~---~v~~~~~~~~~~~~~~~~~~~~vdvvld~~ 251 (350)
T cd08256 177 VVVLAGAGPLGLGMIGAARLK-NPKKLIVLDLKDERL-ALARKFGAD---VVLNPPEVDVVEKIKELTGGYGCDIYIEAT 251 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCHHHH-HHHHHcCCc---EEecCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 567788899998888888877 566566677877765 456677752 122 122 233 2334699999988
Q ss_pred CCcccHHHHHHHHHcCCeEE
Q 018020 82 PTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~ 101 (362)
........+..+++.+-.++
T Consensus 252 g~~~~~~~~~~~l~~~G~~v 271 (350)
T cd08256 252 GHPSAVEQGLNMIRKLGRFV 271 (350)
T ss_pred CChHHHHHHHHHhhcCCEEE
Confidence 86555666778887775543
No 433
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.40 E-value=0.86 Score=44.43 Aligned_cols=89 Identities=8% Similarity=0.032 Sum_probs=56.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH--HHHHHHHH-cCCCCCCcccC--CHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE--KATNFAKA-NNFPPDAKVYG--SYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~--~~~~~~~~-~~~~~~~~~~~--~~~e~l~~~~~D~V~i~~ 81 (362)
..--|+|||.|..|...++.|.+. +++|. ++|.... ..+.+.++ .|++ ++. .-.+.+. ++|+|+++.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~-G~~v~-~~D~~~~~~~~~~l~~~~~g~~----~~~~~~~~~~~~--~~d~vV~sp 76 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQ-GIPFA-VMDSREQPPGLDTLAREFPDVE----LRCGGFDCELLV--QASEIIISP 76 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhC-CCeEE-EEeCCCCchhHHHHHhhcCCcE----EEeCCCChHHhc--CCCEEEECC
Confidence 355689999999999988888777 67765 5775432 22334333 2543 321 1233444 489887765
Q ss_pred CCcccHHHHHHHHHcCCeEEEe
Q 018020 82 PTSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~E 103 (362)
--....+.+.+|.++|++|+.|
T Consensus 77 ~i~~~~p~~~~a~~~~i~i~~~ 98 (448)
T PRK03803 77 GLALDTPALRAAAAMGIEVIGD 98 (448)
T ss_pred CCCCCCHHHHHHHHCCCcEEEH
Confidence 4445556777788889888853
No 434
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=92.33 E-value=6.5 Score=36.63 Aligned_cols=87 Identities=18% Similarity=0.096 Sum_probs=57.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----C-HHHH---hcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----S-YEAL---LDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~-~~e~---l~~~~~D~V~i~ 80 (362)
=+|.|.|+|..|......++.. +++.+.+.++++++.+.+ +++|+. .+++ + .+++ ... ++|+|+-+
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~-G~~~v~~~~~~~~~~~~~-~~~g~~---~~~~~~~~~~~~~~~~~~~~-~~d~vid~ 250 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKAL-GPANIIVVDIDEAKLEAA-KAAGAD---VVVNGSDPDAAKRIIKAAGG-GVDAVIDF 250 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHH-HHhCCc---EEecCCCccHHHHHHHHhCC-CCcEEEEC
Confidence 3678889999998888888777 664344556677766655 667752 2221 1 1222 233 69999988
Q ss_pred CCCcccHHHHHHHHHcCCeEE
Q 018020 81 LPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~ 101 (362)
+......+.+.+++..+-.++
T Consensus 251 ~g~~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 251 VNNSATASLAFDILAKGGKLV 271 (350)
T ss_pred CCCHHHHHHHHHHhhcCCeEE
Confidence 876667788888887775554
No 435
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=92.32 E-value=1.3 Score=39.17 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=26.0
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
||.|||+|..|...++.|... ++.-+-++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~-Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 689999999999999999776 554455777644
No 436
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.27 E-value=0.4 Score=44.10 Aligned_cols=70 Identities=21% Similarity=0.177 Sum_probs=45.9
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-C-C--CCCcc--cCCHHHHhcCCCCcEEEEcCCC
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-F-P--PDAKV--YGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~-~--~~~~~--~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
|+|||+|.+|...+..+...+-+.-+.++|+++++++..+.+.. . . ..+.+ .++++ .++ +.|+|+++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~--~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAA--DADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhC--CCCEEEEcCCC
Confidence 58999999999888777666544445589999888776665432 1 0 11122 24554 444 48999987654
No 437
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=92.25 E-value=0.57 Score=40.68 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=79.4
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+.-||.+=|+ |.-|.+|.....+- +.++|+-..+...- ...+|.| +|.|..|..++.+.|+-+|..|++.
T Consensus 37 k~TkVi~QGfTGKqgTFHs~q~~eY-gTk~VgG~~pkK~G----t~HLG~P----VF~sV~eA~~~t~a~AsvIyVPpp~ 107 (329)
T KOG1255|consen 37 KDTKVICQGFTGKQGTFHSQQALEY-GTKVVGGVNPKKGG----TTHLGLP----VFNSVAEAKKETGADASVIYVPPPF 107 (329)
T ss_pred CCceEEEecccCCccceeHHHHHHh-CCceeeccCCCcCc----ccccCch----hhhhHHHHHHhhCCCceEEEeCChh
Confidence 4567888785 66677888776655 67888887765421 2345765 8999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
.+..+.+++++-.+.++---=...-.+.-++.......
T Consensus 108 Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q 145 (329)
T KOG1255|consen 108 AAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQ 145 (329)
T ss_pred HHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhc
Confidence 99999999999988664322233455666666655443
No 438
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.22 E-value=0.52 Score=41.80 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=58.9
Q ss_pred HHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
++++++++|+|--+.+. .+.+.+.+ -+|++-|...+....++++++-+.||+|++=|+.+.++++..-.++.....
T Consensus 73 L~~vk~~~GlpvvTeV~~~~~~~~v~~--~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~ 150 (264)
T PRK05198 73 LQEVKETFGVPVLTDVHEPEQAAPVAE--VVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREA 150 (264)
T ss_pred HHHHHHHHCCceEEEeCCHHHHHHHHh--hCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc
Confidence 56778899986111111 22333334 399999999999999999999999999999999999999887777766655
Q ss_pred C
Q 018020 124 G 124 (362)
Q Consensus 124 ~ 124 (362)
|
T Consensus 151 G 151 (264)
T PRK05198 151 G 151 (264)
T ss_pred C
Confidence 4
No 439
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.22 E-value=3.1 Score=38.71 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=59.4
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC--HH----HHhcCCCCcEEEEcC
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS--YE----ALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~----e~l~~~~~D~V~i~~ 81 (362)
-+|.|.| +|..|....+.++.. +..++++..++ ++.+ +++++|-.. +.-|.+ +. ++.....+|+|+-+.
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~-~k~~-~~~~lGAd~-vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSS-EKLE-LLKELGADH-VINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCH-HHHH-HHHhcCCCE-EEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 4688999 688898888888888 44666666544 5555 778877421 111222 33 333334799999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeC
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EK 104 (362)
-.......+......|+-|.+--
T Consensus 220 G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 220 GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CHHHHHHHHHHhccCCEEEEEec
Confidence 99888885554445556666543
No 440
>PRK00536 speE spermidine synthase; Provisional
Probab=92.19 E-value=3 Score=37.47 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=29.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN 53 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~ 53 (362)
.+-||.|||.|-- ..++.+.++|. +++ +||.|++-. +++++|
T Consensus 72 ~pk~VLIiGGGDG--g~~REvLkh~~-~v~-mVeID~~Vv-~~~k~~ 113 (262)
T PRK00536 72 ELKEVLIVDGFDL--ELAHQLFKYDT-HVD-FVQADEKIL-DSFISF 113 (262)
T ss_pred CCCeEEEEcCCch--HHHHHHHCcCC-eeE-EEECCHHHH-HHHHHH
Confidence 5789999999973 35566667775 655 899998644 455554
No 441
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=92.11 E-value=0.93 Score=45.60 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=27.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR 41 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~ 41 (362)
+..||+|||+|..|...++.|... ++.=+.++|.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~ 370 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDN 370 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 367999999999999999999877 5555557775
No 442
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.99 E-value=3.7 Score=38.46 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=57.3
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC---CHHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG---SYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~---~~~~D~V~i~~ 81 (362)
=+|.|.|+ |.+|...++.++.. +++++++ ++++++.+.+.+++|.. .+.-+. ++.+.+. ...+|+|+-++
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~-~~~~~k~~~~~~~lGa~-~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH-GCYVVGS-AGSSQKVDLLKNKLGFD-EAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEE-cCCHHHHHHHHHhcCCC-EEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 36899998 88998888887766 6787654 56667766665577753 111121 3444332 23689999888
Q ss_pred CCcccHHHHHHHHHcCCeEE
Q 018020 82 PTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~ 101 (362)
.. .....+..+++.|-.+.
T Consensus 237 G~-~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 237 GG-DMLDAALLNMKIHGRIA 255 (348)
T ss_pred CH-HHHHHHHHHhccCCEEE
Confidence 75 35666777777764443
No 443
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.98 E-value=0.87 Score=44.51 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=55.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH-HHHHH---HHHcCCCCCCcccC--CHH-----HHhcCCCCcEEE
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE-KATNF---AKANNFPPDAKVYG--SYE-----ALLDDKDIDAVY 78 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~-~~~~~---~~~~~~~~~~~~~~--~~~-----e~l~~~~~D~V~ 78 (362)
||.|||+|..|...+..+.+. +.+|. ++|+... ..+.. -+..|+. ++. +.+ +.+. +.|+|+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~-G~~V~-~~D~~~~~~~~~~~~~l~~~gi~----~~~g~~~~~~~~~~~~~--~~d~vv 73 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ-GWEVV-VSDRNDSPELLERQQELEQEGIT----VKLGKPLELESFQPWLD--QPDLVV 73 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEE-EECCCCchhhHHHHHHHHHcCCE----EEECCccchhhhhHHhh--cCCEEE
Confidence 689999999999877777766 67755 6776432 22211 1233542 321 111 3444 489998
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEEe
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~E 103 (362)
++..-+...+.+.+|.+.|.+|+.+
T Consensus 74 ~s~gi~~~~~~~~~a~~~~i~v~~~ 98 (459)
T PRK02705 74 VSPGIPWDHPTLVELRERGIEVIGE 98 (459)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEh
Confidence 8655556667888888899888754
No 444
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=0.67 Score=42.38 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=52.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-----------CHHHHHHHHHHcCCC---CCCcccC-CHHHHhcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-----------SLEKATNFAKANNFP---PDAKVYG-SYEALLDDK 72 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-----------~~~~~~~~~~~~~~~---~~~~~~~-~~~e~l~~~ 72 (362)
+|||.+.|+-.++...+..|...+ ++|++|+.. ...-.+.+|.++|+| |. +.-+ .+.+.+++-
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~~-~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~-~l~~~e~~~~l~~l 78 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEAG-HEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPE-KLNDPEFLEELAAL 78 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhCC-CceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccc-cCCcHHHHHHHhcc
Confidence 489999999999999999998875 999999953 112356788888875 11 1111 266667777
Q ss_pred CCcEEEEcC
Q 018020 73 DIDAVYLPL 81 (362)
Q Consensus 73 ~~D~V~i~~ 81 (362)
++|+++++.
T Consensus 79 ~~D~ivvva 87 (307)
T COG0223 79 DPDLIVVVA 87 (307)
T ss_pred CCCEEEEEe
Confidence 899998864
No 445
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=91.86 E-value=6.9 Score=35.53 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=58.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcE-EEEEEcCCHHHHHHHHHHcCCCCCCcccC----C----HHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAV-LSAVASRSLEKATNFAKANNFPPDAKVYG----S----YEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~-vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~----~~e~l~~~~~D~V~i 79 (362)
-+|.|.|.|.+|...+..++.. +++ +++ .++++++.+ +.+++|.. .++. + +.++.....+|+++-
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~-g~~~v~~-~~~~~~~~~-~~~~~g~~---~~~~~~~~~~~~~l~~~~~~~~vd~vld 204 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAA-GARRVIA-IDRRPARLA-LARELGAT---EVVTDDSEAIVERVRELTGGAGADVVIE 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEE-ECCCHHHHH-HHHHhCCc---eEecCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 4688889998998888888777 677 554 555666555 55667753 1221 2 223333357999999
Q ss_pred cCCCcccHHHHHHHHHcCCeEE
Q 018020 80 PLPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~ 101 (362)
++........+.++++.+-.++
T Consensus 205 ~~g~~~~~~~~~~~l~~~g~~~ 226 (312)
T cd08269 205 AVGHQWPLDLAGELVAERGRLV 226 (312)
T ss_pred CCCCHHHHHHHHHHhccCCEEE
Confidence 8877667777888887764443
No 446
>PLN02740 Alcohol dehydrogenase-like
Probab=91.84 E-value=2.7 Score=39.96 Aligned_cols=91 Identities=10% Similarity=0.025 Sum_probs=58.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCcccC----CHHHHhc---CCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVYG----SYEALLD---DKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~e~l~---~~~~D~V~i~ 80 (362)
=+|.|+|+|.+|...+..++.. ++ +++ ++++++++.+. ++++|... +.-+. ++.+.+. ...+|+|+-+
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi-~~~~~~~r~~~-a~~~Ga~~-~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARAR-GASKII-GVDINPEKFEK-GKEMGITD-FINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCCcEE-EEcCChHHHHH-HHHcCCcE-EEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 3789999999999888888877 56 455 56777776554 46677531 00111 1323221 1269999999
Q ss_pred CCCcccHHHHHHHHHc--CCeEEEe
Q 018020 81 LPTSMHVKWAISVAQK--KKHLLME 103 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~--gk~V~~E 103 (362)
+........+..+++. |+-|++-
T Consensus 276 ~G~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 276 AGNVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCChHHHHHHHHhhhcCCCEEEEEc
Confidence 9877777777777766 5555543
No 447
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=91.83 E-value=0.4 Score=44.28 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=41.9
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCc-EEEEEEcCCH--HHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNA-VLSAVASRSL--EKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~-~vv~v~d~~~--~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
|||+|||+ |..|...+..+...+.. +|+ ++|+++ ++++..+.+ .+........+++++ +.+ .|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~-lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~--aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEIN-LISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG--SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEE-EEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC--CCEE
Confidence 58999998 99999988888776543 555 567744 433322211 111111112346665 554 8999
Q ss_pred EEcCC
Q 018020 78 YLPLP 82 (362)
Q Consensus 78 ~i~~~ 82 (362)
+++..
T Consensus 77 iitag 81 (309)
T cd05294 77 IITAG 81 (309)
T ss_pred EEecC
Confidence 98754
No 448
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.81 E-value=1.5 Score=43.32 Aligned_cols=45 Identities=13% Similarity=0.008 Sum_probs=35.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF 55 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~ 55 (362)
.-|+.|+|+|.+|...+..++.+ +.. +-++|++.++.+ .++++|.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~-V~v~d~~~~rle-~a~~lGa 208 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAI-VRAFDTRPEVKE-QVQSMGA 208 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHH-HHHHcCC
Confidence 46999999999999999988887 566 557899888655 4455664
No 449
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=91.81 E-value=2.4 Score=36.25 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=41.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHH---HHHcCCCCCCcc-cCCHHHHhcC--CCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNF---AKANNFPPDAKV-YGSYEALLDD--KDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~~-~~~~~e~l~~--~~~D~V~i~ 80 (362)
.-+|.-+|+|. |..-...++.. +...++ .+|.+++..+.. .+.+++...+.+ ..|..+.+.. ..+|+|++.
T Consensus 41 ~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~-avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 41 GDMILDIGCGT-GSVTVEASLLVGETGKVY-AVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred cCEEEEeCCcC-CHHHHHHHHHhCCCCEEE-EEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 35789999987 55444444433 345655 578888766543 334553222222 3466665432 468999985
Q ss_pred C
Q 018020 81 L 81 (362)
Q Consensus 81 ~ 81 (362)
.
T Consensus 119 ~ 119 (198)
T PRK00377 119 G 119 (198)
T ss_pred C
Confidence 4
No 450
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=91.81 E-value=0.36 Score=47.04 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=41.3
Q ss_pred EEEEcCCCcccHHHHHHHHHcC----CeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 76 AVYLPLPTSMHVKWAISVAQKK----KHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~g----k~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
+.++++||..-..++...-++| .-|.+|||++.|++.|++|.+...+.
T Consensus 121 ifYLA~PP~~f~~i~~~l~~~~l~~~~RiViEKPFG~Dl~SA~~Ln~~l~~~ 172 (484)
T PRK12854 121 VHYLAVPPSAFLDVTRALGEAGLAEGSRVVMEKPFGTDLASAEALNAAVHEV 172 (484)
T ss_pred EEEEecCHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7889999998888887766666 57999999999999999999977653
No 451
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=91.75 E-value=2 Score=40.06 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=60.4
Q ss_pred HHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
..+.++++|++--+.+ ..+++.+.+ - +|++-|++.+-...++...+.+.||+|++-++++.++++.....+.....
T Consensus 149 L~~~~~~~Gl~v~tev~d~~~~~~l~~-~-vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~ 226 (335)
T PRK08673 149 LAEAREETGLPIVTEVMDPRDVELVAE-Y-VDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAE 226 (335)
T ss_pred HHHHHHHcCCcEEEeeCCHHHHHHHHH-h-CCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 4566778888611111 133333433 3 99999999999999999999999999999999999999999988888765
Q ss_pred CC
Q 018020 124 GV 125 (362)
Q Consensus 124 ~~ 125 (362)
|-
T Consensus 227 GN 228 (335)
T PRK08673 227 GN 228 (335)
T ss_pred CC
Confidence 43
No 452
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.66 E-value=0.91 Score=42.49 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=28.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKA 46 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~ 46 (362)
+||.|.|+ |++|...+..|.+..+.+|+++ +++.++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~-~r~~~~~ 39 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGM-DMQTDRL 39 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEE-eCcHHHH
Confidence 57999997 9999999999876656888865 5655443
No 453
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=91.61 E-value=1.7 Score=40.40 Aligned_cols=78 Identities=12% Similarity=0.237 Sum_probs=60.9
Q ss_pred HHHHHHHcCCCCCCcccCCHH--HHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKVYGSYE--ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~--e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
..+.++++|++--+..+ |.+ ++|++-++|+.=|++.+-.+.+++..+.+.||+|++=..+ .+++|.++.++..++.
T Consensus 81 L~~~~~~~Gi~~~stpf-d~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm-atl~Ei~~Av~~i~~~ 158 (329)
T TIGR03569 81 LKEYCESKGIEFLSTPF-DLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM-ATLEEIEAAVGVLRDA 158 (329)
T ss_pred HHHHHHHhCCcEEEEeC-CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHHHHHHc
Confidence 45567778875111112 222 4566667999999999999999999999999999998888 5999999999999887
Q ss_pred CC
Q 018020 124 GV 125 (362)
Q Consensus 124 ~~ 125 (362)
|.
T Consensus 159 G~ 160 (329)
T TIGR03569 159 GT 160 (329)
T ss_pred CC
Confidence 64
No 454
>PLN02427 UDP-apiose/xylose synthase
Probab=91.58 E-value=1.2 Score=42.34 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=31.7
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATN 48 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~ 48 (362)
-++|||.|.|+ |++|...++.|.+..+.+|+++ |++.++...
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l-~r~~~~~~~ 54 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLAL-DVYNDKIKH 54 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEE-ecCchhhhh
Confidence 46789999995 9999999999987755787765 555544443
No 455
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.48 E-value=1.1 Score=42.97 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=67.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+..||.|||+|..|...+..|... ++.=+.++|.+.-....+.+++ |.+ ++. ...+.|..-.+++-+.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~---Ka~-~a~~~l~~~np~v~i~ 115 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAA-GVGTLGIVEFDVVDESNLQRQVIHGQSDVGRS---KAQ-SARDSIVEINPLVNVR 115 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCEecCcccccccccChhcCCCh---HHH-HHHHHHHHhCCCcEEE
Confidence 357899999999999999999876 5555668886542222222221 211 111 1222232223333222
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHN 136 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~ 136 (362)
+.+...-.+-+...+ .+..++++ .+.+.+.-..+.++|.++++++..+....+.
T Consensus 116 ~~~~~i~~~~~~~~~-~~~D~Vvd--~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~ 169 (392)
T PRK07878 116 LHEFRLDPSNAVELF-SQYDLILD--GTDNFATRYLVNDAAVLAGKPYVWGSIYRFE 169 (392)
T ss_pred EEeccCChhHHHHHH-hcCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEEeccCE
Confidence 222111122223333 35567775 3456766666778899999998877666553
No 456
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.43 E-value=3.3 Score=39.03 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=58.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc--C----CHHH----HhcCCCCcEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY--G----SYEA----LLDDKDIDAV 77 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~----~~~e----~l~~~~~D~V 77 (362)
-+|.|+|+|.+|...+..++.. ++ .++ +.++++++.+. ++++|.. .++ . ++.+ +... .+|+|
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~-G~~~vi-~~~~~~~~~~~-~~~~Ga~---~~i~~~~~~~~~~~~v~~~~~~-~~d~v 261 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIR-GASRII-GVDLNPSKFEQ-AKKFGVT---EFVNPKDHDKPVQEVIAEMTGG-GVDYS 261 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEE-EEcCCHHHHHH-HHHcCCc---eEEcccccchhHHHHHHHHhCC-CCCEE
Confidence 4789999999999888888776 56 555 55677776664 4667742 122 1 2222 2232 69999
Q ss_pred EEcCCCcccHHHHHHHHHcC--CeEEE
Q 018020 78 YLPLPTSMHVKWAISVAQKK--KHLLM 102 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~g--k~V~~ 102 (362)
+-++........+..+++.| +-|++
T Consensus 262 id~~G~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 262 FECTGNIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred EECCCChHHHHHHHHHhhcCCCEEEEE
Confidence 99988777777778888774 44444
No 457
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=91.38 E-value=0.79 Score=40.51 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=57.4
Q ss_pred HHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
.+++++++|+|--+.+. .+.+.+.+ -+|++-|...+....++++++-+.||+|++=|+.+.++++..-.++.....
T Consensus 65 L~~vk~~~glpvvTeV~~~~~~~~vae--~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~ 142 (258)
T TIGR01362 65 LQKVKEEFGVPILTDVHESSQCEPVAE--VVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLST 142 (258)
T ss_pred HHHHHHHhCCceEEEeCCHHHHHHHHh--hCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc
Confidence 56778899986111111 22233333 399999999999999999999999999999999999999877666655544
No 458
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=91.38 E-value=8.9 Score=35.54 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=57.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHH--HHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SYE--ALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~--e~l~~~~~D~V~i~~~~~ 84 (362)
-++.|.|+|.+|...+..++.. +.+++. +++++++.+.+ .++|.. .++. +.+ +.+ ...+|+|+-+++..
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~-G~~v~~-~~~~~~~~~~~-~~~g~~---~vi~~~~~~~~~~~-~~~~d~v~~~~g~~ 243 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL-GAEVTA-FSRSPSKKEDA-LKLGAD---EFIATKDPEAMKKA-AGSLDLIIDTVSAS 243 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCeEEE-EcCCHHHHHHH-HHcCCc---EEecCcchhhhhhc-cCCceEEEECCCCc
Confidence 4688899999998888777776 677664 55666666554 567643 2222 111 112 24699999999887
Q ss_pred ccHHHHHHHHHcCCe-EEEe
Q 018020 85 MHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~-V~~E 103 (362)
...+.+..+++.+-+ +.+-
T Consensus 244 ~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 244 HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred chHHHHHHHhcCCCEEEEEe
Confidence 667777888876544 4443
No 459
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=91.38 E-value=4.8 Score=34.29 Aligned_cols=111 Identities=21% Similarity=0.219 Sum_probs=65.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH---HHHcCCCCCCc-ccCCHHHHh----cCCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF---AKANNFPPDAK-VYGSYEALL----DDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~-~~~~~~e~l----~~~~~D~V~i 79 (362)
.-++.=||||. |.......+..|+..++| +|.+.+.++.. +++.++. ++. +..|..+++ .+..+|.|++
T Consensus 17 ~~~ilDiGcG~-G~~~~~la~~~p~~~v~g-vD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGK-GRFLIDMAKQNPDKNFLG-IEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCc-cHHHHHHHHhCCCCCEEE-EEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45788999998 666666666788888774 67777655443 2334442 222 346776654 3346999998
Q ss_pred cCCCcc----c----------HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 80 PLPTSM----H----------VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 80 ~~~~~~----h----------~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
.-|.+. | ...+.+.|+.|--+++. +.+..-+.++.+...+.+
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~---td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK---TDNEPLFEDMLKVLSEND 149 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHhCC
Confidence 766542 2 22344555666555542 234445556666666555
No 460
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.31 E-value=0.62 Score=42.98 Aligned_cols=71 Identities=24% Similarity=0.319 Sum_probs=41.3
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCccc---C--CHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVY---G--SYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~---~--~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+ |.+|...+..+...+-+.-+.++|++ +++..+-+.. ....+.+. . |+.+-++ +.|+|+++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~--daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALK--GADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcC--CCCEEEEeC
Confidence 58999999 99999887777655444445588887 3333222221 10112333 2 2234444 489999864
Q ss_pred CC
Q 018020 82 PT 83 (362)
Q Consensus 82 ~~ 83 (362)
-.
T Consensus 77 G~ 78 (310)
T cd01337 77 GV 78 (310)
T ss_pred CC
Confidence 43
No 461
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.29 E-value=0.34 Score=44.42 Aligned_cols=69 Identities=28% Similarity=0.368 Sum_probs=43.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcC--CC---CCCcccCC--HHHHhcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANN--FP---PDAKVYGS--YEALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~--~~---~~~~~~~~--~~e~l~~~~~D~V~i~ 80 (362)
+||+|||+|.+|...+..+....-. +++ ++|+.++.++-.+.++. .+ ....++.+ ++++ .+.|+|+|+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~-LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~---~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELV-LIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDL---KGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEE-EEEcccccccchhcchhhcchhccCceEEecCCChhhh---cCCCEEEEe
Confidence 4899999999999888877444323 544 88988666554444321 00 11234443 4433 358999997
Q ss_pred C
Q 018020 81 L 81 (362)
Q Consensus 81 ~ 81 (362)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 6
No 462
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=91.20 E-value=2 Score=40.73 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=68.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH----------H-------HHHHHHHHcCCCCCCcccCCHHHHh
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL----------E-------KATNFAKANNFPPDAKVYGSYEALL 69 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~----------~-------~~~~~~~~~~~~~~~~~~~~~~e~l 69 (362)
+-.||+|=|.|+.|...+..+... +.+|+++.|..- + +.+.+.+.++. ... +-++++
T Consensus 206 ~G~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga----~~i-~~~e~~ 279 (411)
T COG0334 206 EGARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGA----EYI-TNEELL 279 (411)
T ss_pred CCCEEEEECccHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCc----eEc-cccccc
Confidence 357999999999999999988877 999999888643 1 23333333331 223 337787
Q ss_pred cCCCCcEEEEc-CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 70 DDKDIDAVYLP-LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 70 ~~~~~D~V~i~-~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.. ++|+.+=| +.+.-+..-+. .|++. +++|--=..+..+|.+++. +.|+.+.
T Consensus 280 ~~-~cDIl~PcA~~n~I~~~na~-~l~ak--~V~EgAN~P~t~eA~~i~~---erGIl~~ 332 (411)
T COG0334 280 EV-DCDILIPCALENVITEDNAD-QLKAK--IVVEGANGPTTPEADEILL---ERGILVV 332 (411)
T ss_pred cc-cCcEEcccccccccchhhHH-Hhhhc--EEEeccCCCCCHHHHHHHH---HCCCEEc
Confidence 75 79988854 44444443333 33333 8888633334456666555 7776653
No 463
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.03 E-value=1.4 Score=43.57 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=53.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH--HHHHHHHHcCCCCCCccc-C-CHHHHhcCCCCcEEEEcCCC-
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE--KATNFAKANNFPPDAKVY-G-SYEALLDDKDIDAVYLPLPT- 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~--~~~~~~~~~~~~~~~~~~-~-~~~e~l~~~~~D~V~i~~~~- 83 (362)
-+|.|+|.|..|...++.|++. +.+|. ++|.... ..+.+.+ .+. ++..+ . ...+.++ ++|+|+++.--
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~-G~~v~-~~D~~~~~~~~~~L~~-~~~--~~~~~~g~~~~~~~~--~~d~vv~sp~I~ 80 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH-GARLR-VADTREAPPNLAALRA-ELP--DAEFVGGPFDPALLD--GVDLVALSPGLS 80 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHC-CCEEE-EEcCCCCchhHHHHHh-hcC--CcEEEeCCCchhHhc--CCCEEEECCCCC
Confidence 4799999999998888888877 67766 5775432 2233322 221 11222 2 2334455 48988886322
Q ss_pred ccc---HHHHHHHHHcCCeEEEe
Q 018020 84 SMH---VKWAISVAQKKKHLLME 103 (362)
Q Consensus 84 ~~h---~~~~~~al~~gk~V~~E 103 (362)
..| .+.+.+|-+.|++|+.+
T Consensus 81 ~~~~~~~~~~~~a~~~~i~v~~~ 103 (498)
T PRK02006 81 PLEAALAPLVAAARERGIPVWGE 103 (498)
T ss_pred CcccccCHHHHHHHHCCCcEEEH
Confidence 223 47777888888888854
No 464
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.02 E-value=1.2 Score=41.98 Aligned_cols=121 Identities=11% Similarity=0.046 Sum_probs=62.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH-------HcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK-------ANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+..||.|||+|..|...+..|... ++.=+.++|.+.-....+.+ ..|.+ ++. ...+-|..-.+++-+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~---Ka~-~a~~~l~~~np~v~v~ 101 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGA-GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQP---KAE-SAREAMLALNPDVKVT 101 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCEEcccccccCcccChhHCCCh---HHH-HHHHHHHHHCCCcEEE
Confidence 356999999999999999998766 56556677775421111111 11221 111 1222222223333333
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
+.+.....+-+...+ .+-.|+++ .+.+.+.-.-+.++|.++++++..+....|
T Consensus 102 ~~~~~i~~~~~~~~~-~~~DvVvd--~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 102 VSVRRLTWSNALDEL-RDADVILD--GSDNFDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred EEEeecCHHHHHHHH-hCCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 322222222223333 34456654 234454444566777888887776654443
No 465
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=91.00 E-value=3.6 Score=37.41 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=46.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC----CC---cccCCHHHHhcC-C-CCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP----DA---KVYGSYEALLDD-K-DIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~----~~---~~~~~~~e~l~~-~-~~D~V~i 79 (362)
-||.|||.|- | ..++.+.+++..+-+-+|+.+++-.+-..+.+..+. +. ...+|--+.+.+ + ..|+|++
T Consensus 78 k~VLiiGgGd-G-~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGD-G-GTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCc-c-HHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 3999999985 3 456666677777777799999876665555554432 11 124666677664 2 4899887
Q ss_pred c
Q 018020 80 P 80 (362)
Q Consensus 80 ~ 80 (362)
=
T Consensus 156 D 156 (282)
T COG0421 156 D 156 (282)
T ss_pred c
Confidence 3
No 466
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=90.97 E-value=0.62 Score=43.31 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=46.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-HHhc-CCCCcEEEEcC--CC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-ALLD-DKDIDAVYLPL--PT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~-~~~~D~V~i~~--~~ 83 (362)
.-||.|||+|-||.-.+..|.+. ++.-+.|++|+.++ .. |.+.. +.+. ..+.|+|+.+| ..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~-g~~~i~v~nRt~~~-----~~---------~~~~~~~~~~~~~~~DvVIs~t~~Ta 238 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQ-GYSRITFCSRQQLT-----LP---------YRTVVREELSFQDPYDVIFFGSSESA 238 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHc-CCCEEEEEcCCccc-----cc---------hhhhhhhhhhcccCCCEEEEcCCcCC
Confidence 46899999999999999999887 54446699998742 11 22221 1111 24689999974 34
Q ss_pred cccHHHHHHHHH
Q 018020 84 SMHVKWAISVAQ 95 (362)
Q Consensus 84 ~~h~~~~~~al~ 95 (362)
..|+.+...-++
T Consensus 239 s~~p~i~~~~~~ 250 (338)
T PRK00676 239 YAFPHLSWESLA 250 (338)
T ss_pred CCCceeeHHHHh
Confidence 445544444444
No 467
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.94 E-value=3.2 Score=38.68 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=73.7
Q ss_pred eeEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--------CCCCcccCCHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--------PPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
+|||++|..-..-+ ..-..+...|++++++......+ +-...+++.- .|.-.-.+.+++++.....-+|+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~-a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~~p~pVim 79 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGRE-AIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIM 79 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHH-HHHHHHhcCCCEEEEecccccccHHHHHHHHhcCCCCcEEE
Confidence 47999999865544 45566778888999988865444 4444555431 01112234555667777788999
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEEeCCCC---CCHHHHHH
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLMEKPMA---LNVAEFDV 115 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~EKP~~---~~~~~~~~ 115 (362)
+++-+..+.++..+|++.|.-=++.||.. ..+.+..+
T Consensus 80 vsslt~~g~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~ 119 (350)
T COG2201 80 VSSLTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAE 119 (350)
T ss_pred EeccccccHHHHHHHHhcCcceeecCCCcccccchHHHHH
Confidence 99999999999999999996667889974 34444433
No 468
>PRK08462 biotin carboxylase; Validated
Probab=90.93 E-value=2.1 Score=41.70 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=60.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH--HHHHHHHc-CCCCC--CcccCCHHHHhc---CCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK--ATNFAKAN-NFPPD--AKVYGSYEALLD---DKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~--~~~~~~~~-~~~~~--~~~~~~~~e~l~---~~~~D~V~i 79 (362)
+-||.|+|.|.++...++.++++ ++++++++...... .-.+++++ -++++ ..-|.+.+.+++ ..++|+|+-
T Consensus 4 ~k~ili~~~g~~~~~~~~~~~~~-G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 4 IKRILIANRGEIALRAIRTIQEM-GKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 34899999999999999999999 88888887533221 12333432 12111 124666666654 468999997
Q ss_pred cCCC-cccHHHHHHHHHcCCeEE
Q 018020 80 PLPT-SMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 80 ~~~~-~~h~~~~~~al~~gk~V~ 101 (362)
.... ..+...+..+-+.|..++
T Consensus 83 g~g~lse~~~~a~~~e~~Gi~~~ 105 (445)
T PRK08462 83 GYGFLSENQNFVEICSHHNIKFI 105 (445)
T ss_pred CCCccccCHHHHHHHHHCCCeEE
Confidence 6543 345666666667777655
No 469
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=90.88 E-value=4.9 Score=35.63 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=75.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH---cCCCCCC-cccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA---NNFPPDA-KVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~---~~~~~~~-~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.||.=.|+|+-.-.++-+..--|.-+|+ .++..++.++...+. +++...+ ....|..+.....++|+|++=.|.+
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg~~G~v~-tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~P 174 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVGPEGHVT-TYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLPDP 174 (256)
T ss_pred CEEEEcccCchHHHHHHHHhhCCCceEE-EEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCCCh
Confidence 4566667766333333332223445555 678888777655443 2432211 1235566665556899999999876
Q ss_pred -ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 85 -MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 85 -~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
.+.+.+..+|+.|-.+.| ++.+.++.++..+..++.|-
T Consensus 175 W~~le~~~~~Lkpgg~~~~---y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 175 WNVLEHVSDALKPGGVVVV---YSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred HHHHHHHHHHhCCCcEEEE---EcCCHHHHHHHHHHHHhcCc
Confidence 568899999999988777 66799999999999999853
No 470
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=90.88 E-value=2.5 Score=38.98 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=65.9
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH--HHHHcC-CC-------CCCcccCCHHHHhcCCCCc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATN--FAKANN-FP-------PDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~--~~~~~~-~~-------~~~~~~~~~~e~l~~~~~D 75 (362)
...+|-+-|+ |++|...+..|... +..|.|.+ |+++..+. ...++. .+ .+..-++++++.++. +|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r-GY~V~gtV-R~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~g--cd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR-GYTVRGTV-RDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDG--CD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC-CCEEEEEE-cCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhC--CC
Confidence 4688999997 78999999999877 78899887 44443222 122221 11 234557888888885 99
Q ss_pred EEE-EcCCCcccHHHHHHHHHcCCeEEEe-CCCCCCHHHHHHHHHHHHHcC
Q 018020 76 AVY-LPLPTSMHVKWAISVAQKKKHLLME-KPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 76 ~V~-i~~~~~~h~~~~~~al~~gk~V~~E-KP~~~~~~~~~~l~~~a~~~~ 124 (362)
.|+ +++|.+.-..- -| +=+...+....-++++|++.+
T Consensus 81 gVfH~Asp~~~~~~~------------~e~~li~pav~Gt~nVL~ac~~~~ 119 (327)
T KOG1502|consen 81 GVFHTASPVDFDLED------------PEKELIDPAVKGTKNVLEACKKTK 119 (327)
T ss_pred EEEEeCccCCCCCCC------------cHHhhhhHHHHHHHHHHHHHhccC
Confidence 998 67775432110 11 112336677778888888876
No 471
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=90.83 E-value=1.3 Score=42.67 Aligned_cols=115 Identities=15% Similarity=0.058 Sum_probs=57.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCc-----EEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEE
Q 018020 10 RFGIIGAADIARKLSRAITLAPNA-----VLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~-----~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
||.|||+|.+|...++.|... ++ .-+.|+|.+.-....+.+++ |.+ +. ....+.+..-.+++-
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~---Ka-~vAa~~l~~lNp~v~ 75 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKP---KS-EVAAAAVKAMNPDLK 75 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCccccccCcCccCChhHcCcH---HH-HHHHHHHHHHCCCCE
Confidence 689999999999999999766 55 44557886543222222222 211 11 111122222123333
Q ss_pred EEcCCCc---ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 78 YLPLPTS---MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 78 ~i~~~~~---~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
+.+.... .-..+.....=.+..|++. ...+.+.-..+.+.|...++++..+-
T Consensus 76 I~a~~~~v~~~~~~~~~~~f~~~~DvVi~--alDn~~aR~~vn~~C~~~~iPli~~g 130 (435)
T cd01490 76 ITALQNRVGPETEHIFNDEFWEKLDGVAN--ALDNVDARMYVDRRCVYYRKPLLESG 130 (435)
T ss_pred EEEEecccChhhhhhhhHHHhcCCCEEEE--CCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3222111 1111111222234555553 23456666667777788888777654
No 472
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=90.74 E-value=15 Score=34.82 Aligned_cols=90 Identities=19% Similarity=0.077 Sum_probs=55.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----CCC-c----------------------
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----PDA-K---------------------- 60 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~~~-~---------------------- 60 (362)
-+|.|.|+ |.+|...+..++.. +++++++ ++++++.+.+ +++|.. ..- .
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~-G~~vv~~-~~s~~~~~~~-~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA-GANPVAV-VSSEEKAEYC-RALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARR 271 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCeEEEE-eCCHHHHHHH-HHcCCCEEEcccccccccccccccchhhhhhhhccch
Confidence 47899997 89998888777766 7887754 5677766544 557742 000 0
Q ss_pred ccCCHHHHhcCC-CCcEEEEcCCCcccHHHHHHHHHcC-CeEEE
Q 018020 61 VYGSYEALLDDK-DIDAVYLPLPTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 61 ~~~~~~e~l~~~-~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~ 102 (362)
....+.++.... .+|+|+-++.. ...+.+.++++.+ .-|.+
T Consensus 272 ~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 272 FGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred HHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEEE
Confidence 001112233333 69999988765 4566677777665 44444
No 473
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=90.72 E-value=0.61 Score=42.41 Aligned_cols=117 Identities=9% Similarity=0.084 Sum_probs=65.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC----CCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP----DAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~----~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
+.-||.|+|+|..|...++.|... ++.=+.++|.+.-....+.+++-+.. ..++-... +-|+.-++++-+-+..
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLala-GVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~-~~L~eLNp~V~V~~~~ 95 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILA-GVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQ-ARLAELNPYVPVTVST 95 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHH-HHHHHHCCCCEEEEEe
Confidence 467899999999999999999766 67667788876544443333321110 00111111 2222223333332221
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
..... ..++ .-.|.+- ...+.+...++-+.|+++++++..+..
T Consensus 96 ~~~~~----~~l~-~fdvVV~--~~~~~~~~~~in~~c~~~~ipfI~a~~ 138 (286)
T cd01491 96 GPLTT----DELL-KFQVVVL--TDASLEDQLKINEFCHSPGIKFISADT 138 (286)
T ss_pred ccCCH----HHHh-cCCEEEE--ecCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 11112 2222 2234433 234788888999999999999876644
No 474
>TIGR03586 PseI pseudaminic acid synthase.
Probab=90.67 E-value=2.4 Score=39.32 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
+.+.++++|++--+..+ .++ +++.+-++|++=|++.+-.+.+++..+.+.||+|++=..+ .+++|.+..++..++.
T Consensus 82 L~~~~~~~Gi~~~stpfd~~sv-d~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~-~t~~Ei~~Av~~i~~~ 159 (327)
T TIGR03586 82 LFERAKELGLTIFSSPFDETAV-DFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI-ATLEEIQEAVEACREA 159 (327)
T ss_pred HHHHHHHhCCcEEEccCCHHHH-HHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHHHHHHC
Confidence 55568888875211122 223 3455567999999999999999999999999999999998 5999999999999876
Q ss_pred CC
Q 018020 124 GV 125 (362)
Q Consensus 124 ~~ 125 (362)
|.
T Consensus 160 g~ 161 (327)
T TIGR03586 160 GC 161 (327)
T ss_pred CC
Confidence 55
No 475
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.67 E-value=0.89 Score=33.12 Aligned_cols=33 Identities=9% Similarity=0.252 Sum_probs=25.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR 41 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~ 41 (362)
..+++|+|+|.+|...+..+.+.. ...+.++|+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 468999999999999988887763 334567776
No 476
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.64 E-value=0.43 Score=39.78 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=34.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN 53 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~ 53 (362)
.+.||.|+|+|..|..-+..+..+ +++++ +.|..+++.+.+...+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~-~~d~~~~~~~~~~~~~ 63 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVV-VPDERPERLRQLESLG 63 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEE-EEESSHHHHHHHHHTT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEE-eccCCHHHHHhhhccc
Confidence 478999999999999999999999 68866 6688888777665543
No 477
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=90.59 E-value=0.77 Score=41.86 Aligned_cols=106 Identities=12% Similarity=0.163 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE--cCCCccc----HHHHHHH
Q 018020 20 ARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL--PLPTSMH----VKWAISV 93 (362)
Q Consensus 20 g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i--~~~~~~h----~~~~~~a 93 (362)
|+.-...++....+.+++++|+.....+...+--+...++.+.+|.+++++... |+.+| +.|-..+ .+.+.+|
T Consensus 15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~~~~~vpii~s~~~~~e~~~-e~liIgia~~gG~~~~~~~~~i~eA 93 (339)
T COG3367 15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGGDKADVPIISSVEEALEGLA-EALIIGIAPPGGVLPESWREYIVEA 93 (339)
T ss_pred chhhhhhhcccccceeeeEEeeeccccccHHHhCCccCCCcccccHHHHHhcCc-ceEEEEeecCCCcCcHHHHHHHHHH
Confidence 333444455554599999999876543332232333355678999999998743 55554 4444333 3778999
Q ss_pred HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 94 AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 94 l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+++|.+|..- +-.-+++--++.++|+++|+.+.
T Consensus 94 l~~G~nVvsg--lh~~ls~dp~~~k~A~~~G~rl~ 126 (339)
T COG3367 94 LEAGMNVVSG--LHSFLSDDPEFVKLAERTGVRLD 126 (339)
T ss_pred HHhCchhhhh--hHHHhhcChHHHHHHHHcCCeeE
Confidence 9999998852 33347777789999999999665
No 478
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.58 E-value=5.6 Score=37.48 Aligned_cols=91 Identities=9% Similarity=-0.012 Sum_probs=57.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----CHH----HHhcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----SYE----ALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~----e~l~~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...+..++.. ++..+.++++++++.+.+ +++|.. .+.-+. ++. ++.. ..+|+|+-+
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~-~~~ga~-~~i~~~~~~~~~~~~~~~~~~-~g~d~vid~ 261 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKA-KEFGAT-DFINPKDSDKPVSEVIREMTG-GGVDYSFEC 261 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHH-HHcCCC-cEeccccccchHHHHHHHHhC-CCCCEEEEC
Confidence 4789999999998888877766 664333566777765544 667752 110111 112 2223 469999998
Q ss_pred CCCcccHHHHHHHHHc--CCeEEEe
Q 018020 81 LPTSMHVKWAISVAQK--KKHLLME 103 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~--gk~V~~E 103 (362)
+........+..+++. |+-|.+-
T Consensus 262 ~g~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 262 TGNADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCChHHHHHHHHhcccCCCEEEEEc
Confidence 8876666677777754 5555554
No 479
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=90.49 E-value=2.3 Score=37.34 Aligned_cols=142 Identities=11% Similarity=0.088 Sum_probs=87.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--------C-----------HHHHHHHHHHc-CCCCCCcc------
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--------S-----------LEKATNFAKAN-NFPPDAKV------ 61 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--------~-----------~~~~~~~~~~~-~~~~~~~~------ 61 (362)
.-+|.+||.|..|...+.+|.+.. +.-+-+.|. | ..+.+.++++. .|.|.+.+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsG-ig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSG-IGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcC-CCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 357999999999999999987763 222223332 1 12333344433 23333222
Q ss_pred --cCCHHHHhcCCCCcEEEEcCCCc-ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc--cC
Q 018020 62 --YGSYEALLDDKDIDAVYLPLPTS-MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWV--HN 136 (362)
Q Consensus 62 --~~~~~e~l~~~~~D~V~i~~~~~-~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r--~~ 136 (362)
-+++++++.. ++|.|+-|..+- .-..++..|.+++.+|+.=--. ..+-.-..+.++--.+ +.
T Consensus 109 ~t~en~~~~~~~-~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Ga------------g~k~DPTri~v~DiskT~~D 175 (263)
T COG1179 109 ITEENLEDLLSK-GFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGA------------GGKLDPTRIQVADISKTIQD 175 (263)
T ss_pred hCHhHHHHHhcC-CCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccc------------cCCCCCceEEeeechhhccC
Confidence 2566777776 899999998874 5577777899999988863221 1222345566664444 79
Q ss_pred hhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 137 PRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 137 p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
|....+|+-+ +....|.-..+.+-|+.
T Consensus 176 PLa~~vR~~L-Rk~~~~~~~gi~vVfS~ 202 (263)
T COG1179 176 PLAAKVRRKL-RKRFPKIKFGVPVVFST 202 (263)
T ss_pred cHHHHHHHHH-HHhccCCccCCceEecC
Confidence 9999999988 43323444456666654
No 480
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.47 E-value=0.62 Score=42.72 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=30.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKAT 47 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~ 47 (362)
-.||++||+|.||...+..+.. .+++|+ ++|++++.++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~-l~D~~~~~~~ 40 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVV-LKDISPEALE 40 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh-cCCceE-EEeCCHHHHH
Confidence 4689999999999998888776 578866 8899876543
No 481
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=90.44 E-value=2.6 Score=42.15 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=61.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEE-EEcCCHH------HHHHHHHHcCCCC-----CCcccCCHHHHhcCCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSA-VASRSLE------KATNFAKANNFPP-----DAKVYGSYEALLDDKDI 74 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~-v~d~~~~------~~~~~~~~~~~~~-----~~~~~~~~~e~l~~~~~ 74 (362)
+.-||+|||.|.++...+-.|....=-++.+ +.|.... ...+.+++++-.- +...-.++.++++ ..
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~--~~ 205 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFE--PA 205 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhc--CC
Confidence 5689999999999999999888774233322 3344332 2244556655210 1122455666665 48
Q ss_pred cEEEEcCCCccc---HHHHHHHHHcCCeEEEeCCC
Q 018020 75 DAVYLPLPTSMH---VKWAISVAQKKKHLLMEKPM 106 (362)
Q Consensus 75 D~V~i~~~~~~h---~~~~~~al~~gk~V~~EKP~ 106 (362)
|+|+..+.+..+ ..+-..|++.|++.+.=||.
T Consensus 206 DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~ 240 (637)
T TIGR03693 206 DWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICL 240 (637)
T ss_pred cEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEc
Confidence 999998886654 44555788889665554444
No 482
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=90.40 E-value=1 Score=40.72 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=61.6
Q ss_pred eEEEEEeccH-HHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAAD-IARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~-~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||.|+|.+. .|..+...+. ++.+++++.-.+ .++ .-.+...+++...+||+||.+-.-..-
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~----------~Di----td~~~v~~~i~~~~PDvVIn~AAyt~v- 63 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE----------LDI----TDPDAVLEVIRETRPDVVINAAAYTAV- 63 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc----------ccc----cChHHHHHHHHhhCCCEEEECcccccc-
Confidence 4599999855 4767766665 678888765433 333 345667788888889999987443110
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
..|- .+ =||-+..+...+..|+++|++.|.++
T Consensus 64 ---D~aE---~~--~e~A~~vNa~~~~~lA~aa~~~ga~l 95 (281)
T COG1091 64 ---DKAE---SE--PELAFAVNATGAENLARAAAEVGARL 95 (281)
T ss_pred ---cccc---CC--HHHHHHhHHHHHHHHHHHHHHhCCeE
Confidence 0000 00 12335578889999999999998765
No 483
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=90.31 E-value=0.58 Score=44.45 Aligned_cols=84 Identities=10% Similarity=0.135 Sum_probs=50.2
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHHH---hcCCCCcEEEEcCCCcc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEAL---LDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e~---l~~~~~D~V~i~~~~~~ 85 (362)
||+|||.|..|..++..++++ +++++ ++|+++.. +..+++++=+ .-+.|.+.+ ++..++|+|+..... .
T Consensus 1 kililG~g~~~~~l~~aa~~~-G~~v~-~~d~~~~~~~~~~ad~~~~----~~~~d~~~l~~~~~~~~id~v~~~~e~-v 73 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL-GVEVI-AVDRYANAPAMQVAHRSYV----INMLDGDALRAVIEREKPDYIVPEIEA-I 73 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEE-EEeCCCCCchhhhCceEEE----cCCCCHHHHHHHHHHhCCCEEEeccCc-c
Confidence 699999999999999999888 78866 45555432 2334433211 113565554 444579988754333 3
Q ss_pred cHHHHHHHHHcCCeE
Q 018020 86 HVKWAISVAQKKKHL 100 (362)
Q Consensus 86 h~~~~~~al~~gk~V 100 (362)
....+..+-+.|.++
T Consensus 74 ~~~~~~~l~~~g~~~ 88 (380)
T TIGR01142 74 ATDALFELEKEGYFV 88 (380)
T ss_pred CHHHHHHHHhcCCee
Confidence 333344444556554
No 484
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=90.29 E-value=9.4 Score=35.39 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=57.4
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHh---cCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l---~~~~~D~V~i~~ 81 (362)
-+|.|.|+ |.+|...++.++.. ++ +++++ ++++++.+.+.+++|... +..+ .++.+.+ ....+|+|+-++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~-~~s~~~~~~~~~~lGa~~-vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGI-CGSDEKCQLLKSELGFDA-AINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEE-cCCHHHHHHHHHhcCCcE-EEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 47899997 88998888877766 66 67755 456777777766677531 1111 2333322 124699999887
Q ss_pred CCcccHHHHHHHHHcCCeEE
Q 018020 82 PTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~ 101 (362)
... +.+.+..+++.+-.++
T Consensus 233 g~~-~~~~~~~~l~~~G~iv 251 (345)
T cd08293 233 GGE-ISDTVISQMNENSHII 251 (345)
T ss_pred CcH-HHHHHHHHhccCCEEE
Confidence 764 4566777887764443
No 485
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=90.28 E-value=0.6 Score=45.65 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=39.6
Q ss_pred EEEEcCCCcccHHHHHHHHHcC-------CeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 76 AVYLPLPTSMHVKWAISVAQKK-------KHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~g-------k~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
+.++++||..-..++...-++| .-|++|||++.|++.|++|-+...+
T Consensus 130 ifYLA~PP~~f~~i~~~L~~~~l~~~g~~~RiviEKPFG~Dl~SA~~Ln~~l~~ 183 (491)
T PLN02539 130 LFYLALPPSVYPPVCKMIKKCCMNKSGLWTRIVVEKPFGKDLESAEELSSQIGE 183 (491)
T ss_pred EEEEecChHHHHHHHHHHHHhcCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7889999988777777666555 3799999999999999999987765
No 486
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=90.22 E-value=2.3 Score=39.69 Aligned_cols=132 Identities=12% Similarity=0.055 Sum_probs=74.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CH----HHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SY----EALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~----~e~l~~~~~D~V~i~~~ 82 (362)
-+|.|.|+|..|...++.++.. ++..+.+.++++++.+.+ .++|... +..+. ++ .++.....+|+|+-++.
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~-~~~ga~~-~i~~~~~~~~~~l~~~~~~~~~d~vid~~g 250 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELA-EELGATI-VLDPTEVDVVAEVRKLTGGGGVDVSFDCAG 250 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHH-HHhCCCE-EECCCccCHHHHHHHHhCCCCCCEEEECCC
Confidence 3688999998888888888777 673334556777766544 5566421 00111 22 23333345999999987
Q ss_pred CcccHHHHHHHHHcCCeEEE-e---CCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 83 TSMHVKWAISVAQKKKHLLM-E---KPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~-E---KP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
.....+.+.++++.+-.+++ - .|...+. .... .+++.+.-.... -...+.++.+++ ++|.|
T Consensus 251 ~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~------~~~~-~~~~~i~g~~~~-~~~~~~~~~~~~-~~g~l 315 (351)
T cd08233 251 VQATLDTAIDALRPRGTAVNVAIWEKPISFNP------NDLV-LKEKTLTGSICY-TREDFEEVIDLL-ASGKI 315 (351)
T ss_pred CHHHHHHHHHhccCCCEEEEEccCCCCCccCH------HHHH-hhCcEEEEEecc-CcchHHHHHHHH-HcCCC
Confidence 66666777788877755543 1 2222222 1222 233443322111 124567777877 66766
No 487
>PRK06849 hypothetical protein; Provisional
Probab=90.17 E-value=0.93 Score=43.28 Aligned_cols=114 Identities=12% Similarity=0.073 Sum_probs=65.7
Q ss_pred ceeEEEEEeccH-HHHHHHHHHhcCCCcEEEEEEcCCHHHH---HHHHHHcC-CC-CCC---cccCCHHHHhcCCCCcEE
Q 018020 7 AAIRFGIIGAAD-IARKLSRAITLAPNAVLSAVASRSLEKA---TNFAKANN-FP-PDA---KVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G~-~g~~~~~~~~~~~~~~vv~v~d~~~~~~---~~~~~~~~-~~-~~~---~~~~~~~e~l~~~~~D~V 77 (362)
+++||.|+|++. .+...++++.+. +.+++++ |.++... .+.++++- +| +.. ...+.+.+++...++|+|
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~-G~~Vi~~-d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v 80 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNA-GHTVILA-DSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL 80 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE-eCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 479999999987 577889999988 8888855 5554322 22334432 21 100 012333445556789988
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHH------HHHHHHHHHcCCEE
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEF------DVILNACEENGVQL 127 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~------~~l~~~a~~~~~~~ 127 (362)
+-.+.........+..++.+.++++ .+.+.+ .++.+.+++.|+++
T Consensus 81 IP~~e~~~~~a~~~~~l~~~~~v~~-----~~~~~~~~~~DK~~~~~~~~~~Gipv 131 (389)
T PRK06849 81 IPTCEEVFYLSHAKEELSAYCEVLH-----FDFELLLLLHNKWEFAEQARSLGLSV 131 (389)
T ss_pred EECChHHHhHHhhhhhhcCCcEEEc-----CCHHHHHHhhCHHHHHHHHHHcCCCC
Confidence 8766543222223344544544443 344444 34566778888765
No 488
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.16 E-value=0.32 Score=45.15 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=42.5
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcE-----EEEEEcCCH--HHHHHHHHHc-CC----CCCCcccCCHHHHhcCCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAV-----LSAVASRSL--EKATNFAKAN-NF----PPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~-----vv~v~d~~~--~~~~~~~~~~-~~----~~~~~~~~~~~e~l~~~~~D 75 (362)
+||+|||+ |.+|...+..+...+-+. -+.++|+++ +.++..+.+. +. .+.+.+..+..+.+++ +|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~--aD 78 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD--VD 78 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC--CC
Confidence 58999999 999998888776543232 244788876 5443222111 00 0112333455566664 99
Q ss_pred EEEEcC
Q 018020 76 AVYLPL 81 (362)
Q Consensus 76 ~V~i~~ 81 (362)
+|+++.
T Consensus 79 iVVitA 84 (323)
T cd00704 79 VAILVG 84 (323)
T ss_pred EEEEeC
Confidence 999863
No 489
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=90.15 E-value=7.5 Score=36.67 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=59.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----CHHHHh---cCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----SYEALL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~e~l---~~~~~D~V~i~~ 81 (362)
-+|.|+|+|.+|...+..++.. ++..+.+.++++++.+ +++++|.. .+.-+. ++.+.+ ....+|+|+-++
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~-~~~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 264 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFE-LAKKFGAT-DCVNPKDHDKPIQQVLVEMTDGGVDYTFECI 264 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHH-HHHHcCCC-EEEcccccchHHHHHHHHHhCCCCcEEEECC
Confidence 4688999999999888888877 5633335577777766 44677752 111111 132222 112699999998
Q ss_pred CCcccHHHHHHHHHc--CCeEEEe
Q 018020 82 PTSMHVKWAISVAQK--KKHLLME 103 (362)
Q Consensus 82 ~~~~h~~~~~~al~~--gk~V~~E 103 (362)
........+..+++. |+-|.+-
T Consensus 265 g~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 265 GNVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CChHHHHHHHHhhccCCCeEEEEc
Confidence 876677778888855 4455543
No 490
>PRK10083 putative oxidoreductase; Provisional
Probab=90.14 E-value=3.6 Score=38.11 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=58.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhcCC--CCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLDDK--DIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~~~--~~D~V~i~~~ 82 (362)
-+|.|+|+|.+|...+..++..-++..+.++++++++.+ +++++|.. .++ .++.+.+... ++|+|+-++.
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~-~~~~~Ga~---~~i~~~~~~~~~~~~~~g~~~d~vid~~g 237 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLA-LAKESGAD---WVINNAQEPLGEALEEKGIKPTLIIDAAC 237 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHHhCCc---EEecCccccHHHHHhcCCCCCCEEEECCC
Confidence 378999999999888777775326766667888877654 45667753 122 1344444322 3568888887
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
.......+.++++.+-.++
T Consensus 238 ~~~~~~~~~~~l~~~G~~v 256 (339)
T PRK10083 238 HPSILEEAVTLASPAARIV 256 (339)
T ss_pred CHHHHHHHHHHhhcCCEEE
Confidence 6556777778887764443
No 491
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=90.06 E-value=1.9 Score=37.54 Aligned_cols=48 Identities=35% Similarity=0.459 Sum_probs=38.8
Q ss_pred ceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC
Q 018020 7 AAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFP 56 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~ 56 (362)
.++.+++||+|..|+. ..+.. +..+++.+|..+++.+++.+++.++.|
T Consensus 9 ~~v~~~~vgtgrl~ra~~~ra~--h~~~~cs~i~srS~~~a~~LaE~~~a~ 57 (289)
T COG5495 9 ARVVVGIVGTGRLGRAALLRAD--HVVVACSAISSRSRDRAQNLAETYVAP 57 (289)
T ss_pred eeeEEEEeecchHHHHHHHHhc--chheeehhhhhcCHHHHhhchhccCCC
Confidence 4789999999998887 33332 336888999999999999999988765
No 492
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=90.06 E-value=1.3 Score=37.25 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=45.4
Q ss_pred cEEEEEEcCCHHHHHHHHHH---cCCCCCCcccCCHHHHhcCC-----------------------------CCcEEEEc
Q 018020 33 AVLSAVASRSLEKATNFAKA---NNFPPDAKVYGSYEALLDDK-----------------------------DIDAVYLP 80 (362)
Q Consensus 33 ~~vv~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~e~l~~~-----------------------------~~D~V~i~ 80 (362)
..+|-|+|.+..-.+.+..- .|+. +.+|.|.+++|+.. +++.=+|.
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~--v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIf 81 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQ--VKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIF 81 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCce--eeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 34566666666544444333 2432 46677777776653 22233333
Q ss_pred CCCcccHHHHHHHHHcCCeEEEeCCCCC
Q 018020 81 LPTSMHVKWAISVAQKKKHLLMEKPMAL 108 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~EKP~~~ 108 (362)
..-+--.+++.+|+|+|-.=|+|||+..
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~ 109 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSE 109 (202)
T ss_pred EeCCCChHHHHHHHHcchhhHHhCCCch
Confidence 3344557889999999988899999855
No 493
>PLN00106 malate dehydrogenase
Probab=89.90 E-value=0.68 Score=42.96 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=41.9
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-C-CCC-CCc---ccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-N-FPP-DAK---VYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-~-~~~-~~~---~~~~~~e~l~~~~~D~V~i~ 80 (362)
+.||+|||+ |++|...+..+...+-+.-+.++|+++ ++..+.+. + .+. ... -.+|+.+.+.+ .|+|+++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~--aDiVVit 93 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKG--ADLVIIP 93 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCC--CCEEEEe
Confidence 469999999 999998888887554444444888866 21111110 0 000 111 12344566664 9999986
Q ss_pred CC
Q 018020 81 LP 82 (362)
Q Consensus 81 ~~ 82 (362)
.-
T Consensus 94 AG 95 (323)
T PLN00106 94 AG 95 (323)
T ss_pred CC
Confidence 43
No 494
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.87 E-value=3.1 Score=39.82 Aligned_cols=107 Identities=10% Similarity=0.066 Sum_probs=62.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHH----HhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEA----LLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e----~l~~~~~D~V~i~~ 81 (362)
-+|.|.|+|.+|...+..++.. +++++.+.|+++++.+ +++++|.. ...+ .++.+ +.....+|+|+-++
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~~~~r~~-~a~~~Ga~--~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~ 262 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLL-GAAVVIVGDLNPARLA-QARSFGCE--TVDLSKDATLPEQIEQILGEPEVDCAVDCV 262 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHH-HHHHcCCe--EEecCCcccHHHHHHHHcCCCCCcEEEECC
Confidence 3678899999999888888766 6766667788776544 55667752 1111 12322 22223588888877
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
....|-...+. .. ..+....++.++.++..|..+++|.
T Consensus 263 G~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 263 GFEARGHGHDG--------KK----EAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCccccccccc--------cc----cchHHHHHHHHHHhhCCCEEEEeee
Confidence 76532100000 00 0122345555667777777777775
No 495
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.87 E-value=1 Score=40.72 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=39.9
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH---HHhcC----CC-CcEEEEc
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE---ALLDD----KD-IDAVYLP 80 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---e~l~~----~~-~D~V~i~ 80 (362)
+|.|+|+ |.+|...++.|.+. +.+|.+ ..|++++... .++..-.--++|.+ +.++. .. +|.|+.+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~-~~R~~~~~~~----~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~ 74 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLV-ASRSSSSSAG----PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLV 74 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEE-EeCCCccccC----CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEe
Confidence 4789997 99999999988766 677765 4466554321 12110001133433 44421 24 8888877
Q ss_pred CCC
Q 018020 81 LPT 83 (362)
Q Consensus 81 ~~~ 83 (362)
+|+
T Consensus 75 ~~~ 77 (285)
T TIGR03649 75 APP 77 (285)
T ss_pred CCC
Confidence 764
No 496
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=89.75 E-value=1 Score=42.99 Aligned_cols=87 Identities=9% Similarity=0.153 Sum_probs=51.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHH---HhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEA---LLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e---~l~~~~~D~V~i~~~ 82 (362)
+++||+|||.|..|..++..+++. +++++ ++|.++.. ...+++.+-. .-+.|.+. +++..++|+|+....
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~-G~~v~-~~~~~~~~~~~~~ad~~~~----~~~~d~~~l~~~~~~~~id~vi~~~e 84 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRL-GVEVI-AVDRYANAPAMQVAHRSHV----IDMLDGDALRAVIEREKPDYIVPEIE 84 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCCCCchHHhhhheEE----CCCCCHHHHHHHHHHhCCCEEEEeeC
Confidence 567999999999888888888887 78876 45554432 2234443211 01345444 445557998886543
Q ss_pred CcccHHHHHHHHHcCCeE
Q 018020 83 TSMHVKWAISVAQKKKHL 100 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V 100 (362)
. .....+..+.+.|.++
T Consensus 85 ~-~~~~~~~~l~~~g~~~ 101 (395)
T PRK09288 85 A-IATDALVELEKEGFNV 101 (395)
T ss_pred c-CCHHHHHHHHhcCCee
Confidence 3 2233344444556554
No 497
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=89.67 E-value=1.4 Score=39.37 Aligned_cols=74 Identities=12% Similarity=0.220 Sum_probs=53.9
Q ss_pred HHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 018020 46 ATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACE 121 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~ 121 (362)
.+++++++|+|--+.+. .+.+.+.+ -+|++-|...+....++++++.+.||+|++=|+.+.+.++..-.++...
T Consensus 79 L~~vk~~~GlpvvTeV~~~~~~~~~ae--~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~ 154 (281)
T PRK12457 79 FEEVKARFGVPVITDVHEVEQAAPVAE--VADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCR 154 (281)
T ss_pred HHHHHHHHCCceEEEeCCHHHHHHHhh--hCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHH
Confidence 45778899986211111 12222333 4999999999999999999999999999999999999877555554443
No 498
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=89.66 E-value=3.1 Score=37.31 Aligned_cols=73 Identities=18% Similarity=0.113 Sum_probs=44.6
Q ss_pred HHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHc-C-CeE
Q 018020 24 SRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQK-K-KHL 100 (362)
Q Consensus 24 ~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~-g-k~V 100 (362)
+.+|++.. .++|. .+|++++.+++ +.+.|+- ....++ .+.+.+ .|+|++|+|...-..++.+.... + ..+
T Consensus 2 A~aL~~~g~~~~v~-g~d~~~~~~~~-a~~~g~~--~~~~~~-~~~~~~--~DlvvlavP~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 2 ALALRKAGPDVEVY-GYDRDPETLEA-ALELGII--DEASTD-IEAVED--ADLVVLAVPVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHTTTTSEEE-EE-SSHHHHHH-HHHTTSS--SEEESH-HHHGGC--CSEEEE-S-HHHHHHHHHHHHCGS-TTSE
T ss_pred hHHHHhCCCCeEEE-EEeCCHHHHHH-HHHCCCe--eeccCC-HhHhcC--CCEEEEcCCHHHHHHHHHHhhhhcCCCcE
Confidence 45666653 57765 68999886554 4566753 133444 556664 89999999998887777776652 2 245
Q ss_pred EEe
Q 018020 101 LME 103 (362)
Q Consensus 101 ~~E 103 (362)
+++
T Consensus 75 v~D 77 (258)
T PF02153_consen 75 VTD 77 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 499
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.56 E-value=12 Score=34.61 Aligned_cols=89 Identities=16% Similarity=0.121 Sum_probs=56.6
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC---CHHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG---SYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~---~~~~D~V~i~~ 81 (362)
-+|.|.|+ |.+|...++.++.. ++++++++ +++++.+.+.+.+|.. .+.-+. ++.+.+. ...+|+|+-++
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~-~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~ 229 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK-GCYVVGSA-GSDEKVDLLKNKLGFD-DAFNYKEEPDLDAALKRYFPNGIDIYFDNV 229 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEe-CCHHHHHHHHHhcCCc-eeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence 36889997 88898888877766 77876544 5667666665547752 111111 3333222 24689999887
Q ss_pred CCcccHHHHHHHHHcCCeEE
Q 018020 82 PTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~ 101 (362)
.. ...+.+..+++.+-.++
T Consensus 230 g~-~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 230 GG-KMLDAVLLNMNLHGRIA 248 (338)
T ss_pred CH-HHHHHHHHHhccCcEEE
Confidence 75 45666777777664443
No 500
>PRK07411 hypothetical protein; Validated
Probab=89.54 E-value=1.8 Score=41.41 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=64.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH-------HcCCCCCCcccCCHHHHhcC--CCCcEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK-------ANNFPPDAKVYGSYEALLDD--KDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~e~l~~--~~~D~V 77 (362)
+..||+|||+|..|...+..|... ++.-+.++|.+.-....+-+ ..|.+ ++ ....+-|.. +.+++.
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~-Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~---Ka-~~a~~~l~~~np~v~v~ 111 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAA-GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKP---KI-ESAKNRILEINPYCQVD 111 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCEecccccCcCcccChHHCCCc---HH-HHHHHHHHHHCCCCeEE
Confidence 356899999999999999999877 66666688875322221111 12221 11 112222222 233333
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
.+.. ....+-+...++ +-.|+++ .+.+.+.-.-+.+.|.+.++++..+....|
T Consensus 112 ~~~~--~~~~~~~~~~~~-~~D~Vvd--~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 112 LYET--RLSSENALDILA-PYDVVVD--GTDNFPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred EEec--ccCHHhHHHHHh-CCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 3322 222222223332 3456654 344565555566778888888877766655
Done!