BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018023
         (362 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
           Streptomyces Coelicolor
 pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
           Streptomyces Coelicolor
 pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
           In Cytochrome P450 170a1
 pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
           In Cytochrome P450 170a1
          Length = 467

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 19/80 (23%)

Query: 46  NGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKI-------QETGALLLRRLRK 98
            G V LLG G RLA DP+ F  Q LR   +   ++  PK        + TGAL L     
Sbjct: 28  GGGVPLLGHGWRLARDPLAFMSQ-LRDHGDVVRIKLGPKTVYAVTNPELTGALALNP--- 83

Query: 99  HEGHSGPLDHYLVGPYADSI 118
                   D+++ GP  +S+
Sbjct: 84  --------DYHIAGPLWESL 95


>pdb|3HIM|A Chain A, The Crystal Structure Of A Bacterial Regulatory Protein In
           The Tetr Family From Rhodococcus Rha1 To 2.2a
 pdb|3HIM|B Chain B, The Crystal Structure Of A Bacterial Regulatory Protein In
           The Tetr Family From Rhodococcus Rha1 To 2.2a
          Length = 211

 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 16/90 (17%)

Query: 217 VAGAQIYGGT--RRLGAL-----NSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGC 269
           V  A+ YG T  R + A       ++YP+  TKE+LL A  LE   +  + + A DF   
Sbjct: 28  VFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDI 87

Query: 270 TAANAFAMTDSGSQLSSLVSGYRIYYGGGK 299
            A +         +L S V+ Y  ++   +
Sbjct: 88  AAPD---------RLMSTVTAYVTWHADNR 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,671,892
Number of Sequences: 62578
Number of extensions: 358017
Number of successful extensions: 714
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 2
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)