Query 018023
Match_columns 362
No_of_seqs 131 out of 374
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 08:41:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018023.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018023hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 46.6 9.3 0.00068 30.2 4.2 27 192-219 17-43 (118)
2 d1oqya2 a.5.2.1 (A:317-360) DN 39.3 1.9 0.00014 28.9 -0.9 26 196-221 1-30 (44)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 25.2 8.5 0.00062 27.0 0.4 49 225-278 9-57 (59)
4 d1mn3a_ a.5.2.4 (A:) Vacuolar 23.8 9.3 0.00067 26.3 0.4 14 227-240 14-27 (54)
5 d2g7ja1 d.198.5.1 (A:1-112) Pu 22.9 17 0.0012 28.0 1.8 18 195-212 3-20 (112)
6 d1sfsa_ c.1.8.8 (A:) Unnamed h 22.4 19 0.0014 30.9 2.3 23 199-221 80-102 (213)
7 d1r5ta_ c.97.1.1 (A:) mono-dom 21.4 33 0.0024 27.1 3.5 41 202-245 100-140 (141)
8 d2fr5a1 c.97.1.1 (A:11-146) mo 20.6 28 0.0021 27.3 2.9 40 202-246 94-133 (136)
9 d1uwza_ c.97.1.1 (A:) mono-dom 20.1 39 0.0028 26.2 3.6 40 202-245 91-130 (130)
10 d1tiza_ a.39.1.5 (A:) Calmodul 19.0 26 0.0019 23.3 2.1 28 305-332 34-66 (67)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=46.62 E-value=9.3 Score=30.18 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEee
Q 018023 192 LCPLTPEEAVLMLAALGFNRKTHVFVAG 219 (362)
Q Consensus 192 ~CPLtPeEvgl~L~alGf~~~T~IYlA~ 219 (362)
+|||||||+...|+.|==+.+. .||..
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v 43 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKI 43 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEE
Confidence 5999999999999999766555 45553
No 2
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.27 E-value=1.9 Score=28.86 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=17.9
Q ss_pred CHHHHHH--HHHHhCCCCCcE--EEEeecc
Q 018023 196 TPEEAVL--MLAALGFNRKTH--VFVAGAQ 221 (362)
Q Consensus 196 tPeEvgl--~L~alGf~~~T~--IYlA~ge 221 (362)
||+|..- =|.+|||+++.. .|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 4555444 488999999964 6777654
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.17 E-value=8.5 Score=26.96 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=31.0
Q ss_pred ccccchhHHhhCCCcccccccCCccccccccccccccchhhheeeccCceeeec
Q 018023 225 GTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMT 278 (362)
Q Consensus 225 g~~~l~~L~~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDy~Vc~~SDvFv~t 278 (362)
-+..+..|++|||++-. +.+- .-|. .+..+..+|+|=...+.-+.|-|+
T Consensus 9 ~Ee~i~~LkeMFP~~D~-~vI~--~VL~--a~~G~vd~aid~LL~Msd~~~gp~ 57 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQ-EVIR--SVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHCSSSCH-HHHH--HHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cHHHHHHHHHHCCCCCH-HHHH--HHHH--HcCCCHHHHHHHHHhcCCCCcCCC
Confidence 34568999999999962 2221 1121 234666788887777777776553
No 4
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.76 E-value=9.3 Score=26.30 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.8
Q ss_pred ccchhHHhhCCCcc
Q 018023 227 RRLGALNSLYPYLV 240 (362)
Q Consensus 227 ~~l~~L~~~FPnl~ 240 (362)
..++.|++|||++-
T Consensus 14 e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHCTTSC
T ss_pred HHHHHHHHHCCCCC
Confidence 45788999999985
No 5
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=22.87 E-value=17 Score=28.04 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHhCCCCC
Q 018023 195 LTPEEAVLMLAALGFNRK 212 (362)
Q Consensus 195 LtPeEvgl~L~alGf~~~ 212 (362)
|-|.||+.+|..-||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999765
No 6
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.41 E-value=19 Score=30.90 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCCCcEEEEeecc
Q 018023 199 EAVLMLAALGFNRKTHVFVAGAQ 221 (362)
Q Consensus 199 Evgl~L~alGf~~~T~IYlA~ge 221 (362)
.+.-.-++||||..|.||++--.
T Consensus 80 ~A~~~A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 80 NAVFHARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHHHHHHTTCCSSCEEEEECCT
T ss_pred HHHHHHHHcCCCCCCEEEEEecc
Confidence 34446788999999999998764
No 7
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.40 E-value=33 Score=27.09 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=31.1
Q ss_pred HHHHHhCCCCCcEEEEeeccccCccccchhHHhhCCCccccccc
Q 018023 202 LMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENL 245 (362)
Q Consensus 202 l~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L 245 (362)
-+|..++ +.++.|++...+ |+......|.++.|.-++++.|
T Consensus 100 Q~l~E~~-~~~~~ii~~~~~--g~~~~~~~l~eLLP~~F~p~~L 140 (141)
T d1r5ta_ 100 QFINEFV-VKDFPIVMLNST--GSRSKVMTMGELLPMAFGPSHL 140 (141)
T ss_dssp HHHHTTS-CTTCEEEEECSS--SSSEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHHhc-CCCcEEEEEcCC--CCEEEEEEHHHhCCCCCChhhC
Confidence 3677765 458999998776 4444567899999999988876
No 8
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.56 E-value=28 Score=27.29 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=31.2
Q ss_pred HHHHHhCCCCCcEEEEeeccccCccccchhHHhhCCCcccccccC
Q 018023 202 LMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLL 246 (362)
Q Consensus 202 l~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~ 246 (362)
-+|.-+ ..++.||+...+ |+.....|+++.|.-+++++|=
T Consensus 94 Q~l~E~--~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 94 QVMREF--GTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp HHHHHT--CSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGT
T ss_pred HHHHhh--CCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhC
Confidence 355664 478999998874 6666778999999999888773
No 9
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=20.12 E-value=39 Score=26.18 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=29.7
Q ss_pred HHHHHhCCCCCcEEEEeeccccCccccchhHHhhCCCccccccc
Q 018023 202 LMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENL 245 (362)
Q Consensus 202 l~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L 245 (362)
-+|.-++ +.++.||+...+ |+-.-.+|+++.|.=++.++|
T Consensus 91 Q~l~E~~-~~~~~i~l~~~~---g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 91 QVISELC-TKDVIVVLTNLQ---GQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp HHHHHHS-CTTCEEEEECSS---SCEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHHhC-CCCcEEEEECCC---CCEEEEEHHHhCcCCCCcccC
Confidence 3566664 568999999886 433345799999999988775
No 10
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=19.01 E-value=26 Score=23.30 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=19.1
Q ss_pred cchHHHHHHH---h--cCCCccHHHHHHHHHHH
Q 018023 305 PNKRRLAAIF---V--KNSTIEWKVFEQRVRKA 332 (362)
Q Consensus 305 Pdrk~l~~lf---~--~~~~~~w~~f~~~v~~~ 332 (362)
+....+-.+| + .++.|+|.+|...++++
T Consensus 34 ~~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~~~ 66 (67)
T d1tiza_ 34 FTQEDIVKFFEEIDVDGNGELNADEFTSCIEKM 66 (67)
T ss_dssp SCHHHHHHHHHHHCCSSSSEECHHHHHHHHHTC
T ss_pred cchHHHHHHHHHhCCCCCCeEeHHHHHHHHHHh
Confidence 3445555555 2 35789999999888754
Done!