BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018026
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 97.8 bits (242), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 27 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
VG + W P + P Y WA +TF VGD L F+FAAG HDV VT+ +F+ C +P+
Sbjct: 6 VGGDMEWKRPSD-PKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 64
Query: 87 SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
S T P + L +GP Y+IC+ HC GQKL+INV
Sbjct: 65 SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
Score = 75.9 bits (185), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 200 VGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXXX 259
VGG + W P + Y WA F VGD L FD+ A +HDV VTK A+D
Sbjct: 6 VGGDMEWKRPSDPKF-YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 64
Query: 260 XXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
+I L T G Y+ CT HC GQKL++NV
Sbjct: 65 SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 66/106 (62%), Gaps = 7/106 (6%)
Query: 23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNAC- 80
T H+VGD GW VP + P YS WAA +TF VGD+L FNF A H+V + T+ SF+AC
Sbjct: 4 TVHIVGDNTGWSVP-SSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62
Query: 81 --NTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
N+ + + RT SP L G HYF+C+ HC GQKL+INV
Sbjct: 63 FVNSDNDVERT--SPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 198 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDXXXXX 256
H+VG GW+VP + + Y WA F VGD L F++PA H+V E+ TK ++D
Sbjct: 6 HIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFV 64
Query: 257 XXXXXXXXXXXRIT-LGTAGEHYFFCTFPGHCSAGQKLAVNV 297
I L G HYF CT HCS GQKL++NV
Sbjct: 65 NSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
T H VGD+ GW P Y+ WA++ F VGD+L+FN+ H+V +V Q F +CN+
Sbjct: 3 TVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60
Query: 83 TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
+SP + T+ S+ L G YF+C PGHC GQK+ I V
Sbjct: 61 SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 198 HVVGGALGWT--VPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXX 255
H VG + GWT VP + Y WA +N F VGD L+F+Y + H+V++V + +
Sbjct: 5 HKVGDSTGWTTLVPYD----YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60
Query: 256 XXXXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297
I L G YF C PGHC GQK+ + V
Sbjct: 61 SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 25 HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
+VVG + GW +W + F GD L+FN+ H+V V Q F+ CNT +
Sbjct: 3 YVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56
Query: 85 PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 123
T+ + L G YFIC+FPGHC G K+A+N
Sbjct: 57 GAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 198 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXX 257
+VVGG+ GWT ++W + F GDIL+F+Y +H+VV V + +
Sbjct: 3 YVVGGSGGWTFNT------ESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56
Query: 258 XXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVN 296
+I L G+ YF C FPGHC +G K+AVN
Sbjct: 57 GAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 31 LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTT 90
+GW NG A ++F GD LVF + G H+V V + +C+ +
Sbjct: 5 IGWSFNVNG-------ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57
Query: 91 NSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 123
+ + LT G +YFICSFPGHC GG K+AIN
Sbjct: 58 SGQDRIKLT-RGQNYFICSFPGHCGGGMKIAIN 89
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 204 LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXXXXXXX 263
+GW+ N AR +F GD+LVF Y H+VV V Y
Sbjct: 5 IGWSFNVNG-------ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57
Query: 264 XXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVN 296
RI L T G++YF C+FPGHC G K+A+N
Sbjct: 58 SGQDRIKL-TRGQNYFICSFPGHCGGGMKIAIN 89
>pdb|1I53|A Chain A, Re(I)-Tricarbonly Diimine (Q107h)) Azurin
pdb|1I53|B Chain B, Re(I)-Tricarbonly Diimine (Q107h)) Azurin
Length = 128
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 274 AGEHY-FFCTFPGH 286
GEHY FFCTFPGH
Sbjct: 104 EGEHYMFFCTFPGH 117
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 100 ASGPHYFICSFPGHCLGGQKLAINV 124
A G + +IC+FPGH L G K + V
Sbjct: 114 APGTYLYICTFPGHYLAGMKGTLTV 138
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 275 GEHYFFCTFPGHCSAGQK 292
G + + CTFPGH AG K
Sbjct: 116 GTYLYICTFPGHYLAGMK 133
>pdb|1NWO|A Chain A, Crystallographic Study Of Azurin From Pseudomonas Putida
pdb|1NWO|B Chain B, Crystallographic Study Of Azurin From Pseudomonas Putida
pdb|1NWP|A Chain A, Crystallographic Study Of Azurin From Pseudomonas Putida
pdb|1NWP|B Chain B, Crystallographic Study Of Azurin From Pseudomonas Putida
Length = 128
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 274 AGEHY-FFCTFPGHCS 288
AGE Y FFC+FPGH S
Sbjct: 104 AGEKYGFFCSFPGHIS 119
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 273 TAGEHYFFCTFPGHCSAGQ 291
TAG +Y+ C PGH + GQ
Sbjct: 130 TAGTYYYVCQIPGHAATGQ 148
>pdb|1R1C|A Chain A, Pseudomonas Aeruginosa W48fY72FH83QY108W-Azurin Re(Phen)
(Co)3(His107)
pdb|1R1C|B Chain B, Pseudomonas Aeruginosa W48fY72FH83QY108W-Azurin Re(Phen)
(Co)3(His107)
pdb|1R1C|C Chain C, Pseudomonas Aeruginosa W48fY72FH83QY108W-Azurin Re(Phen)
(Co)3(His107)
pdb|1R1C|D Chain D, Pseudomonas Aeruginosa W48fY72FH83QY108W-Azurin Re(Phen)
(Co)3(His107)
Length = 128
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 274 AGEHY-FFCTFPGH 286
GEH+ FFCTFPGH
Sbjct: 104 EGEHWMFFCTFPGH 117
>pdb|2FLQ|A Chain A, Crystal Structure Of Nitric Oxide Synthase From
Geobacillus Stearothermophilus (Atcc 12980) Complexed
With L-Arginine
pdb|2FLQ|B Chain B, Crystal Structure Of Nitric Oxide Synthase From
Geobacillus Stearothermophilus (Atcc 12980) Complexed
With L-Arginine
Length = 375
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 QSSTAQTRHVVGDALGWIVPPNGPAT 42
Q A RHV GD W++PP PAT
Sbjct: 319 QQEKAAGRHVTGD-WTWLIPPLSPAT 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,045,207
Number of Sequences: 62578
Number of extensions: 203921
Number of successful extensions: 617
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 38
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)