Query 018026
Match_columns 362
No_of_seqs 352 out of 1753
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:30:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 2.5E-36 5.5E-41 267.0 13.9 102 19-125 17-118 (167)
2 PLN03148 Blue copper-like prot 100.0 4.4E-36 9.6E-41 265.4 14.6 103 192-299 17-119 (167)
3 PF02298 Cu_bind_like: Plastoc 99.9 6E-29 1.3E-33 198.5 3.9 85 206-291 1-85 (85)
4 PF02298 Cu_bind_like: Plastoc 99.9 1.2E-28 2.6E-33 196.8 2.8 85 33-118 1-85 (85)
5 PRK02710 plastocyanin; Provisi 98.6 8.1E-07 1.8E-11 75.1 11.1 72 48-125 47-119 (119)
6 COG3794 PetE Plastocyanin [Ene 98.4 2.9E-06 6.3E-11 72.7 9.9 73 48-125 54-127 (128)
7 PF00127 Copper-bind: Copper b 98.2 4.9E-06 1.1E-10 67.9 7.0 76 48-125 17-99 (99)
8 TIGR02656 cyanin_plasto plasto 98.2 9.8E-06 2.1E-10 66.2 8.7 90 197-298 2-99 (99)
9 PF00127 Copper-bind: Copper b 98.2 3.7E-06 8E-11 68.6 5.7 79 216-298 14-99 (99)
10 TIGR03102 halo_cynanin halocya 98.1 1.5E-05 3.2E-10 67.3 9.3 90 193-298 21-115 (115)
11 TIGR03102 halo_cynanin halocya 98.1 1.5E-05 3.3E-10 67.2 9.2 72 48-125 42-115 (115)
12 TIGR02656 cyanin_plasto plasto 98.1 1.9E-05 4.2E-10 64.4 8.6 75 48-125 17-99 (99)
13 COG3794 PetE Plastocyanin [Ene 98.0 3.2E-05 7E-10 66.3 9.3 73 221-298 54-127 (128)
14 PRK02710 plastocyanin; Provisi 97.9 6.2E-05 1.3E-09 63.6 9.3 89 194-298 29-119 (119)
15 TIGR02375 pseudoazurin pseudoa 97.9 5.2E-05 1.1E-09 64.0 8.7 75 48-127 15-89 (116)
16 TIGR02375 pseudoazurin pseudoa 97.9 8.3E-05 1.8E-09 62.8 8.7 79 215-300 11-89 (116)
17 TIGR03095 rusti_cyanin rusticy 97.0 0.0021 4.5E-08 56.6 6.5 77 49-125 53-148 (148)
18 TIGR03095 rusti_cyanin rusticy 96.9 0.0021 4.5E-08 56.6 6.4 76 223-298 54-148 (148)
19 TIGR02657 amicyanin amicyanin. 96.9 0.0048 1E-07 48.6 7.4 72 48-125 11-83 (83)
20 TIGR02657 amicyanin amicyanin. 96.8 0.0059 1.3E-07 48.1 7.5 75 216-298 8-83 (83)
21 PF06525 SoxE: Sulfocyanin (So 95.6 0.061 1.3E-06 49.4 8.1 78 224-301 89-189 (196)
22 PF06525 SoxE: Sulfocyanin (So 95.4 0.066 1.4E-06 49.1 7.6 77 53-129 91-190 (196)
23 KOG3858 Ephrin, ligand for Eph 94.8 0.55 1.2E-05 44.3 12.2 78 225-302 47-164 (233)
24 COG4454 Uncharacterized copper 94.6 0.56 1.2E-05 41.6 10.9 79 47-125 62-157 (158)
25 TIGR03096 nitroso_cyanin nitro 94.5 0.056 1.2E-06 46.9 4.6 66 42-115 55-123 (135)
26 KOG3858 Ephrin, ligand for Eph 94.2 0.18 4E-06 47.4 7.7 33 50-82 45-86 (233)
27 PF13473 Cupredoxin_1: Cupredo 93.9 0.022 4.8E-07 46.5 0.9 64 48-124 35-104 (104)
28 PF00812 Ephrin: Ephrin; Inte 93.1 0.038 8.3E-07 48.5 1.0 34 223-256 24-68 (145)
29 TIGR03096 nitroso_cyanin nitro 92.6 0.12 2.6E-06 44.8 3.3 60 221-288 61-123 (135)
30 COG4454 Uncharacterized copper 92.3 0.46 1E-05 42.1 6.7 78 221-298 63-157 (158)
31 TIGR03094 sulfo_cyanin sulfocy 91.6 0.67 1.4E-05 42.2 7.0 31 99-129 159-189 (195)
32 TIGR03094 sulfo_cyanin sulfocy 90.1 0.45 9.9E-06 43.2 4.5 30 272-301 159-188 (195)
33 PLN02604 oxidoreductase 89.4 1.8 3.9E-05 46.1 9.2 80 48-127 55-145 (566)
34 TIGR02376 Cu_nitrite_red nitri 89.2 0.79 1.7E-05 45.1 5.9 79 49-127 60-147 (311)
35 PF13473 Cupredoxin_1: Cupredo 88.2 0.34 7.3E-06 39.5 2.2 64 221-297 35-104 (104)
36 PF00812 Ephrin: Ephrin; Inte 88.1 0.093 2E-06 46.1 -1.3 77 49-125 23-144 (145)
37 TIGR02376 Cu_nitrite_red nitri 87.1 1.1 2.4E-05 44.0 5.5 77 222-301 60-148 (311)
38 PF07732 Cu-oxidase_3: Multico 86.3 0.33 7.2E-06 40.8 1.1 79 49-127 27-116 (117)
39 PLN02354 copper ion binding / 85.9 5.5 0.00012 42.4 10.2 79 49-127 59-147 (552)
40 TIGR02695 azurin azurin. Azuri 85.2 5.5 0.00012 34.1 7.9 29 94-123 91-124 (125)
41 PF10731 Anophelin: Thrombin i 85.0 0.69 1.5E-05 34.4 2.1 32 1-32 1-32 (65)
42 TIGR02695 azurin azurin. Azuri 83.1 8 0.00017 33.2 8.1 29 267-296 91-124 (125)
43 PRK02888 nitrous-oxide reducta 82.8 2 4.3E-05 46.1 5.2 71 48-126 555-634 (635)
44 PRK02888 nitrous-oxide reducta 82.5 2.3 5E-05 45.6 5.6 71 221-299 555-634 (635)
45 PF07174 FAP: Fibronectin-atta 80.1 20 0.00044 34.6 10.4 37 222-258 132-182 (297)
46 TIGR03388 ascorbase L-ascorbat 79.6 3.5 7.5E-05 43.7 5.8 80 48-127 32-122 (541)
47 PF07732 Cu-oxidase_3: Multico 79.4 0.66 1.4E-05 39.0 0.3 79 222-300 27-116 (117)
48 PLN00044 multi-copper oxidase- 76.4 7.1 0.00015 42.0 7.0 79 49-127 61-149 (596)
49 PLN02835 oxidoreductase 73.7 11 0.00023 40.1 7.4 78 49-126 61-148 (539)
50 PLN02191 L-ascorbate oxidase 73.6 15 0.00032 39.4 8.5 77 49-126 55-143 (574)
51 PRK10378 inactive ferrous ion 72.1 20 0.00044 36.3 8.7 72 48-127 44-118 (375)
52 PLN02168 copper ion binding / 71.3 12 0.00027 39.7 7.2 79 49-127 58-146 (545)
53 PLN02792 oxidoreductase 69.4 14 0.0003 39.2 7.1 78 49-126 48-135 (536)
54 TIGR03388 ascorbase L-ascorbat 66.8 7.9 0.00017 41.0 4.7 81 221-301 32-123 (541)
55 PLN02991 oxidoreductase 66.5 32 0.00069 36.6 9.1 79 49-127 60-148 (543)
56 PF00116 COX2: Cytochrome C ox 64.4 10 0.00022 32.0 4.1 68 221-297 46-119 (120)
57 PF01690 PLRV_ORF5: Potato lea 62.8 24 0.00052 36.6 7.1 27 218-244 79-105 (465)
58 PF12961 DUF3850: Domain of Un 61.9 6.8 0.00015 30.4 2.3 18 221-238 25-43 (72)
59 PF01690 PLRV_ORF5: Potato lea 60.6 6.9 0.00015 40.5 2.8 14 285-299 221-234 (465)
60 TIGR03389 laccase laccase, pla 60.4 23 0.0005 37.4 6.8 78 49-127 35-123 (539)
61 PF02839 CBM_5_12: Carbohydrat 59.2 5.9 0.00013 26.6 1.4 19 43-61 1-19 (41)
62 TIGR01480 copper_res_A copper- 59.1 29 0.00064 37.2 7.3 86 206-297 488-586 (587)
63 PF12961 DUF3850: Domain of Un 58.7 7.1 0.00015 30.3 1.9 18 48-65 25-43 (72)
64 PF07172 GRP: Glycine rich pro 58.7 7.9 0.00017 31.6 2.3 10 1-10 1-10 (95)
65 cd06555 ASCH_PF0470_like ASC-1 58.1 8.4 0.00018 32.2 2.4 31 49-79 29-61 (109)
66 PF00116 COX2: Cytochrome C ox 57.7 13 0.00028 31.3 3.6 66 48-124 46-119 (120)
67 PF02839 CBM_5_12: Carbohydrat 57.7 6.1 0.00013 26.5 1.3 18 216-233 1-18 (41)
68 TIGR01480 copper_res_A copper- 57.5 20 0.00042 38.6 5.6 88 32-124 487-586 (587)
69 cd06555 ASCH_PF0470_like ASC-1 53.4 15 0.00032 30.8 3.1 31 221-251 28-60 (109)
70 PRK13838 conjugal transfer pil 53.1 6.2 0.00014 35.7 0.9 15 49-63 48-62 (176)
71 KOG1263 Multicopper oxidases [ 52.3 49 0.0011 35.4 7.6 82 49-131 60-152 (563)
72 TIGR02228 sigpep_I_arch signal 52.1 29 0.00064 30.7 5.0 25 49-73 58-86 (158)
73 PLN02604 oxidoreductase 51.5 20 0.00044 38.2 4.6 81 221-301 55-146 (566)
74 MTH00047 COX2 cytochrome c oxi 50.3 1.4E+02 0.003 27.4 9.4 32 95-128 159-193 (194)
75 PF05283 MGC-24: Multi-glycosy 48.8 94 0.002 28.5 7.8 21 272-292 71-91 (186)
76 TIGR02866 CoxB cytochrome c ox 47.1 43 0.00094 30.6 5.5 93 24-126 93-192 (201)
77 PLN02191 L-ascorbate oxidase 46.7 25 0.00054 37.6 4.4 78 222-299 55-143 (574)
78 TIGR02866 CoxB cytochrome c ox 46.3 44 0.00094 30.6 5.4 87 197-299 93-192 (201)
79 PF08139 LPAM_1: Prokaryotic m 45.0 17 0.00036 22.5 1.6 18 1-18 6-23 (25)
80 COG1622 CyoA Heme/copper-type 44.6 22 0.00048 33.9 3.3 91 198-301 116-214 (247)
81 PLN02983 biotin carboxyl carri 44.2 1.8E+02 0.004 28.2 9.3 17 279-295 255-271 (274)
82 MTH00047 COX2 cytochrome c oxi 43.8 30 0.00065 31.8 3.9 32 268-301 159-193 (194)
83 PRK09723 putative fimbrial-lik 43.7 1.7E+02 0.0037 30.2 9.6 11 22-32 27-37 (421)
84 PLN00044 multi-copper oxidase- 42.4 48 0.001 35.7 5.7 80 222-301 61-150 (596)
85 KOG3671 Actin regulatory prote 41.1 1.1E+02 0.0024 32.2 7.7 8 95-102 280-287 (569)
86 COG1622 CyoA Heme/copper-type 40.4 23 0.00051 33.8 2.7 31 95-127 180-213 (247)
87 COG3627 PhnJ Uncharacterized e 38.9 28 0.0006 32.6 2.8 24 267-290 257-280 (291)
88 PLN02835 oxidoreductase 38.8 58 0.0013 34.6 5.6 78 222-299 61-148 (539)
89 TIGR03389 laccase laccase, pla 38.2 57 0.0012 34.5 5.5 79 222-301 35-124 (539)
90 PF02402 Lysis_col: Lysis prot 38.2 15 0.00033 25.7 0.8 21 1-21 1-21 (46)
91 PLN02354 copper ion binding / 38.1 69 0.0015 34.1 6.1 78 223-300 60-147 (552)
92 PF05382 Amidase_5: Bacterioph 38.0 81 0.0018 27.7 5.5 34 223-256 74-112 (145)
93 PLN02168 copper ion binding / 35.0 81 0.0018 33.6 6.0 80 222-301 58-147 (545)
94 PF02362 B3: B3 DNA binding do 34.0 32 0.00069 27.0 2.2 19 220-238 69-87 (100)
95 PRK11372 lysozyme inhibitor; P 33.8 1.7E+02 0.0036 24.4 6.5 24 55-78 50-76 (109)
96 PRK10378 inactive ferrous ion 33.1 88 0.0019 31.8 5.6 72 221-300 44-118 (375)
97 TIGR01626 ytfJ_HI0045 conserve 32.9 41 0.00088 30.7 2.9 25 38-64 44-68 (184)
98 PRK12407 flgH flagellar basal 31.8 78 0.0017 29.8 4.7 17 47-63 60-76 (221)
99 PRK10883 FtsI repressor; Provi 30.9 2.1E+02 0.0045 29.8 8.1 76 49-127 78-166 (471)
100 PF05382 Amidase_5: Bacterioph 30.6 92 0.002 27.4 4.6 33 50-82 74-111 (145)
101 PF15240 Pro-rich: Proline-ric 29.9 27 0.00058 31.8 1.2 15 7-21 2-16 (179)
102 PLN03089 hypothetical protein; 29.5 2E+02 0.0043 29.3 7.4 28 100-127 102-130 (373)
103 PF09792 But2: Ubiquitin 3 bin 28.7 1.8E+02 0.0039 25.3 6.1 32 95-129 100-131 (143)
104 PRK14950 DNA polymerase III su 27.6 1.9E+02 0.0042 30.9 7.4 14 227-240 499-512 (585)
105 PRK13335 superantigen-like pro 27.5 4E+02 0.0087 26.7 8.8 46 231-284 199-250 (356)
106 PF12195 End_beta_barrel: Beta 27.4 31 0.00067 27.0 1.0 49 50-107 26-80 (83)
107 PRK13042 superantigen-like pro 26.4 3E+02 0.0065 27.0 7.7 61 231-299 134-202 (291)
108 PF01299 Lamp: Lysosome-associ 26.1 4.5E+02 0.0097 25.5 9.1 15 55-69 3-17 (306)
109 PTZ00047 cytochrome c oxidase 25.6 91 0.002 28.0 3.7 30 268-299 116-148 (162)
110 PF11604 CusF_Ec: Copper bindi 24.6 50 0.0011 25.0 1.7 22 220-241 38-59 (70)
111 PRK09810 entericidin A; Provis 24.4 76 0.0016 21.9 2.4 19 1-19 1-19 (41)
112 MTH00140 COX2 cytochrome c oxi 24.1 93 0.002 29.1 3.8 30 268-299 183-215 (228)
113 COG4939 Major membrane immunog 23.9 1.4E+02 0.0029 25.9 4.3 52 1-63 1-65 (147)
114 KOG2315 Predicted translation 23.7 99 0.0021 32.8 4.1 62 220-281 210-277 (566)
115 PRK11627 hypothetical protein; 23.4 84 0.0018 28.9 3.2 21 1-21 1-21 (192)
116 PRK13861 type IV secretion sys 23.3 1.2E+02 0.0027 29.6 4.5 16 1-16 1-16 (292)
117 TIGR02227 sigpep_I_bact signal 23.0 1.6E+02 0.0035 25.8 4.9 13 51-63 51-63 (163)
118 PF10377 ATG11: Autophagy-rela 22.8 59 0.0013 27.8 2.0 18 223-240 41-58 (129)
119 smart00495 ChtBD3 Chitin-bindi 22.5 62 0.0013 21.5 1.7 18 43-60 1-18 (41)
120 PRK11528 hypothetical protein; 22.3 1.1E+02 0.0023 29.4 3.8 37 32-72 27-71 (254)
121 COG3627 PhnJ Uncharacterized e 21.6 83 0.0018 29.5 2.8 25 94-118 257-281 (291)
122 PRK10965 multicopper oxidase; 20.8 1.8E+02 0.0039 30.8 5.5 76 49-127 78-166 (523)
123 PF10377 ATG11: Autophagy-rela 20.7 64 0.0014 27.7 1.8 18 50-67 41-58 (129)
124 PF06462 Hyd_WA: Propeller; I 20.2 1.8E+02 0.004 18.5 3.4 25 95-119 3-27 (32)
125 PLN02991 oxidoreductase 20.0 2.2E+02 0.0048 30.3 6.0 79 222-300 60-148 (543)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=267.00 Aligned_cols=102 Identities=34% Similarity=0.653 Sum_probs=96.1
Q ss_pred hccceEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEE
Q 018026 19 STAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTL 98 (362)
Q Consensus 19 ~~a~~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l 98 (362)
.+++++|+|||+.||+. ..+|+.|+++++|+|||+|+|+|+++.|+|+||++++|++|+..+++..+++|++.|+|
T Consensus 17 ~~~a~~~~VGd~~GW~~----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L 92 (167)
T PLN03148 17 ATTATDHIVGANKGWNP----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPL 92 (167)
T ss_pred hccceEEEeCCCCCcCC----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEe
Confidence 44569999999999984 35799999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceEEEcCCCCCCCCCCeeeEEee
Q 018026 99 TASGPHYFICSFPGHCLGGQKLAINVS 125 (362)
Q Consensus 99 ~~~G~~yFic~~~~HC~~Gmk~~I~V~ 125 (362)
+++|+|||||+ .+||++||||+|+|.
T Consensus 93 ~~~G~~YFIcg-~ghC~~GmKl~I~V~ 118 (167)
T PLN03148 93 NKAKRYYFICG-NGQCFNGMKVTILVH 118 (167)
T ss_pred cCCccEEEEcC-CCccccCCEEEEEEc
Confidence 99999999999 599999999999996
No 2
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=4.4e-36 Score=265.45 Aligned_cols=103 Identities=32% Similarity=0.662 Sum_probs=97.0
Q ss_pred CCCceeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEc
Q 018026 192 TRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITL 271 (362)
Q Consensus 192 ~a~~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l 271 (362)
.+.+++|+|||+.||+. ..+|++|+++++|+|||+|+|+|++++|+|+||++++|+.|+..+++..+++|++.|+|
T Consensus 17 ~~~a~~~~VGd~~GW~~----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L 92 (167)
T PLN03148 17 ATTATDHIVGANKGWNP----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPL 92 (167)
T ss_pred hccceEEEeCCCCCcCC----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEe
Confidence 45788999999999984 35799999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEcCCCCCCCCCCeEEEEeeC
Q 018026 272 GTAGEHYFFCTFPGHCSAGQKLAVNVTG 299 (362)
Q Consensus 272 ~~~G~~yFic~~~~HC~~GmKl~I~V~~ 299 (362)
+++|++||||+ .+||++||||+|+|.+
T Consensus 93 ~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 93 NKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred cCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 99999999999 6999999999999954
No 3
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.95 E-value=6e-29 Score=198.46 Aligned_cols=85 Identities=53% Similarity=1.014 Sum_probs=70.1
Q ss_pred cccCCCCCCCccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCC
Q 018026 206 WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPG 285 (362)
Q Consensus 206 W~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~ 285 (362)
|+++.+. .+|++||++++|+|||+|+|+|+++.|+|+||++++|+.|+..+++..+.+|++.|+|+++|.+||||++++
T Consensus 1 W~~~~~~-~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 1 WTIPTNA-SNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG 79 (85)
T ss_dssp SSSSSST-THHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred CccCCCc-cchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence 7776543 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018026 286 HCSAGQ 291 (362)
Q Consensus 286 HC~~Gm 291 (362)
||++||
T Consensus 80 HC~~Gq 85 (85)
T PF02298_consen 80 HCQKGQ 85 (85)
T ss_dssp TTTTT-
T ss_pred cccccC
Confidence 999999
No 4
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.94 E-value=1.2e-28 Score=196.76 Aligned_cols=85 Identities=48% Similarity=1.097 Sum_probs=70.3
Q ss_pred CcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCC
Q 018026 33 WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPG 112 (362)
Q Consensus 33 W~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~ 112 (362)
|+++.+. .+|+.||++++|+|||+|+|+|.++.|+|+||++++|++|+..+++..+.+|++.|+|+++|.+||||++++
T Consensus 1 W~~~~~~-~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 1 WTIPTNA-SNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG 79 (85)
T ss_dssp SSSSSST-THHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred CccCCCc-cchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence 8886543 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018026 113 HCLGGQ 118 (362)
Q Consensus 113 HC~~Gm 118 (362)
||++||
T Consensus 80 HC~~Gq 85 (85)
T PF02298_consen 80 HCQKGQ 85 (85)
T ss_dssp TTTTT-
T ss_pred cccccC
Confidence 999999
No 5
>PRK02710 plastocyanin; Provisional
Probab=98.55 E-value=8.1e-07 Score=75.15 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=49.6
Q ss_pred cCceeeeCCEEEEeec-CCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026 48 ANQTFTVGDTLVFNFA-AGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 125 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~-~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~ 125 (362)
+..++++||+|.|... ...|+++- + +.+.....+ +....+....++++.+|.|.|+|. .|=+.|||..|.|.
T Consensus 47 ~~i~v~~Gd~V~~~N~~~~~H~v~~-~--~~~~~~~~~-~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 47 STLTIKAGDTVKWVNNKLAPHNAVF-D--GAKELSHKD-LAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEcCCCEEEEEECCCCCceEEe-c--CCccccccc-cccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 7889999999999653 46799863 1 111111111 111122236788999999999998 79889999999983
No 6
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.37 E-value=2.9e-06 Score=72.67 Aligned_cols=73 Identities=26% Similarity=0.269 Sum_probs=54.7
Q ss_pred cCceeeeCCEEEEeecCC-CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026 48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 125 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~~~-~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~ 125 (362)
+..++++||+|.|.+... .|+|.-+...+.+ ....+....+-...++++.+|.|.|+|.- |=..|||..|.|.
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~---g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPE---GSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEeCCCCcc---cccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEEeC
Confidence 788999999999999877 9999876444111 11222122223467899999999999986 8889999999986
No 7
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.19 E-value=4.9e-06 Score=67.91 Aligned_cols=76 Identities=26% Similarity=0.315 Sum_probs=54.2
Q ss_pred cCceeeeCCEEEEee-cCCCccEEEeCcc--ccCCCCCCCCC---CcCCCCC-cEEEEeeccceEEEcCCCCCCCCCCee
Q 018026 48 ANQTFTVGDTLVFNF-AAGNHDVTRVTQS--SFNACNTTSPL---SRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKL 120 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~-~~~~h~V~~V~~~--~y~~C~~~~~i---~~~~~G~-~~v~l~~~G~~yFic~~~~HC~~Gmk~ 120 (362)
+..++++||+|.|.+ +...|+++..... .-..+...... .....|. ..++++++|.|.|+|. + |...||+.
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 778999999999998 5779999886522 11112211111 1122232 5788899999999999 7 99999999
Q ss_pred eEEee
Q 018026 121 AINVS 125 (362)
Q Consensus 121 ~I~V~ 125 (362)
.|.|.
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
No 8
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.18 E-value=9.8e-06 Score=66.21 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=57.7
Q ss_pred eeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEeC-CCCceEEEEcccccC------CCCCCCCCccCCCC-Cce
Q 018026 197 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYP-ARVHDVVEVTKAAYD------SCNSSSTISKSTNP-PTR 268 (362)
Q Consensus 197 ~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~-~~~hsV~~v~~~~y~------~C~~~~~~~~~~~G-~~~ 268 (362)
++.||.+.| ...|.. +..++++||+|.|.-+ ...|+|+..+.. +. .............| ...
T Consensus 2 ~v~~g~~~g-------~~~F~P--~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~ 71 (99)
T TIGR02656 2 TVKMGADKG-------ALVFEP--AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYE 71 (99)
T ss_pred EEEEecCCC-------ceeEeC--CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEE
Confidence 566775332 223555 7789999999999864 357999753221 10 00000000111222 356
Q ss_pred EEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026 269 ITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 298 (362)
Q Consensus 269 v~l~~~G~~yFic~~~~HC~~GmKl~I~V~ 298 (362)
++++.+|.|.|+|. +|++.||+..|.|.
T Consensus 72 ~tF~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 72 VTFSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEeCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 88889999999999 89999999999984
No 9
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.16 E-value=3.7e-06 Score=68.65 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=55.6
Q ss_pred ccccccCCceecCCEEEEEe-CCCCceEEEEcccc--cCCCCCCCC---CccCCCC-CceEEcCCcccEEEEcCCCCCCC
Q 018026 216 YQNWARNNNFSVGDILVFDY-PARVHDVVEVTKAA--YDSCNSSST---ISKSTNP-PTRITLGTAGEHYFFCTFPGHCS 288 (362)
Q Consensus 216 Y~~Wa~~~~f~vGD~LvF~y-~~~~hsV~~v~~~~--y~~C~~~~~---~~~~~~G-~~~v~l~~~G~~yFic~~~~HC~ 288 (362)
|+. +..++++||+|.|.. +...|+|+...... -..+..... ......| ...++++++|.|.|+|. + |.+
T Consensus 14 F~P--~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~ 89 (99)
T PF00127_consen 14 FDP--SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYE 89 (99)
T ss_dssp EES--SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGG
T ss_pred EeC--CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-Ccc
Confidence 555 778999999999999 67789998875220 001111111 1112233 34678889999999999 7 999
Q ss_pred CCCeEEEEee
Q 018026 289 AGQKLAVNVT 298 (362)
Q Consensus 289 ~GmKl~I~V~ 298 (362)
.||+..|.|.
T Consensus 90 ~GM~G~i~V~ 99 (99)
T PF00127_consen 90 AGMVGTIIVE 99 (99)
T ss_dssp TTSEEEEEEE
T ss_pred cCCEEEEEEC
Confidence 9999999984
No 10
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.15 E-value=1.5e-05 Score=67.26 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=62.5
Q ss_pred CCceeeeeec--cC-CcccCCCCCCCccccccCCceecCCEEEEEeCC--CCceEEEEcccccCCCCCCCCCccCCCCCc
Q 018026 193 RQPATHVVGG--AL-GWTVPPNASVGYQNWARNNNFSVGDILVFDYPA--RVHDVVEVTKAAYDSCNSSSTISKSTNPPT 267 (362)
Q Consensus 193 a~~~~~~VG~--~~-GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~--~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~ 267 (362)
+...++.||. +. +.. |+. ...++++||+|.|.++. ..|+|.-.....|+.= ....-.....
T Consensus 21 ~~~~~v~~G~~~~~g~~~--------F~P--~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s~----~~~~~~G~t~ 86 (115)
T TIGR03102 21 QDEVTVDVGAEANGGGFA--------FDP--PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDES----ERVSEEGTTY 86 (115)
T ss_pred CceEEEEecccCCCCcee--------EeC--CEEEECCCCEEEEEECCCCCCEEEEECCCCCcccc----ccccCCCCEE
Confidence 3556788883 22 243 444 67899999999999854 5799974333345421 1111123357
Q ss_pred eEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026 268 RITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 298 (362)
Q Consensus 268 ~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~ 298 (362)
.++++++|.|-|+|. -|=..|||..|.|.
T Consensus 87 s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 87 EHTFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 899999999999999 58778999999983
No 11
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.14 E-value=1.5e-05 Score=67.21 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=52.2
Q ss_pred cCceeeeCCEEEEeecC--CCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026 48 ANQTFTVGDTLVFNFAA--GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 125 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~~--~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~ 125 (362)
...++++||+|.|.++. ..|+|.-.....|++ ............++|+++|.|-|+|.. |=..|||..|.|.
T Consensus 42 ~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~~~~~G~t~s~Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SERVSEEGTTYEHTFEEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cccccCCCCEEEEEecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 67899999999999864 579997432233441 111111233478999999999999985 8677999999984
No 12
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.08 E-value=1.9e-05 Score=64.45 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=50.3
Q ss_pred cCceeeeCCEEEEeec-CCCccEEEeCccccCC------CCCC-CCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCe
Q 018026 48 ANQTFTVGDTLVFNFA-AGNHDVTRVTQSSFNA------CNTT-SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQK 119 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~-~~~h~V~~V~~~~y~~------C~~~-~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk 119 (362)
+..++++||+|.|... ...|+|+..+.. ... .... +.+.........++++.+|.|.|+|. +|++.||+
T Consensus 17 ~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~ 93 (99)
T TIGR02656 17 AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMV 93 (99)
T ss_pred CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCCE
Confidence 7889999999999854 357999753221 100 1000 00111112236788889999999998 89999999
Q ss_pred eeEEee
Q 018026 120 LAINVS 125 (362)
Q Consensus 120 ~~I~V~ 125 (362)
..|.|.
T Consensus 94 G~I~V~ 99 (99)
T TIGR02656 94 GKITVE 99 (99)
T ss_pred EEEEEC
Confidence 999884
No 13
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.04 E-value=3.2e-05 Score=66.29 Aligned_cols=73 Identities=25% Similarity=0.304 Sum_probs=54.5
Q ss_pred cCCceecCCEEEEEeCCC-CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026 221 RNNNFSVGDILVFDYPAR-VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 298 (362)
Q Consensus 221 ~~~~f~vGD~LvF~y~~~-~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V~ 298 (362)
...++++||+|.|.+... .|+|.-+...+.+ -...+..--.-..+++++++|.|.|+|.- |=..|||..|.|.
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~---g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPE---GSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEeCCCCcc---cccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEEeC
Confidence 779999999999999777 9999876554211 11111111122467899999999999995 9999999999985
No 14
>PRK02710 plastocyanin; Provisional
Probab=97.94 E-value=6.2e-05 Score=63.64 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=59.4
Q ss_pred CceeeeeeccCCcccCCCCCCCccccccCCceecCCEEEEEe-CCCCceEEEEcccccCCCCCCCCCccCCCC-CceEEc
Q 018026 194 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDY-PARVHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITL 271 (362)
Q Consensus 194 ~~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y-~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G-~~~v~l 271 (362)
...++.+|.+.|+- .|.. +..++++||+|.|.- +...|+++.- .. +..... .. ....| ..++++
T Consensus 29 ~~~~V~~~~~~~~~-------~F~P--~~i~v~~Gd~V~~~N~~~~~H~v~~~-~~--~~~~~~-~~-~~~pg~t~~~tF 94 (119)
T PRK02710 29 ETVEVKMGSDAGML-------AFEP--STLTIKAGDTVKWVNNKLAPHNAVFD-GA--KELSHK-DL-AFAPGESWEETF 94 (119)
T ss_pred ceEEEEEccCCCee-------EEeC--CEEEEcCCCEEEEEECCCCCceEEec-CC--cccccc-cc-ccCCCCEEEEEe
Confidence 44566777665542 2444 778999999999976 3467998531 11 111001 11 12233 467888
Q ss_pred CCcccEEEEcCCCCCCCCCCeEEEEee
Q 018026 272 GTAGEHYFFCTFPGHCSAGQKLAVNVT 298 (362)
Q Consensus 272 ~~~G~~yFic~~~~HC~~GmKl~I~V~ 298 (362)
+.+|.|.|+|. .|=+.|||..|.|.
T Consensus 95 ~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 95 SEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred cCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 99999999999 79999999999984
No 15
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.93 E-value=5.2e-05 Score=64.04 Aligned_cols=75 Identities=23% Similarity=0.222 Sum_probs=55.0
Q ss_pred cCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEeecC
Q 018026 48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR 127 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~~~ 127 (362)
...++++||+|.|.+....|+|..+.....+. .+......+....++++++|.|-|+|. .|=..||+..|.|...
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 78899999999999987789997542211111 111111123346789999999999998 6999999999999874
No 16
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.86 E-value=8.3e-05 Score=62.83 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=57.1
Q ss_pred CccccccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEE
Q 018026 215 GYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLA 294 (362)
Q Consensus 215 ~Y~~Wa~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~ 294 (362)
.|+. ...++++||+|.|.+....|+|..+.....+. .+....-.+....++++++|.|-|+|. .|=..||+..
T Consensus 11 ~F~P--~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~ 83 (116)
T TIGR02375 11 VFEP--AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVAL 83 (116)
T ss_pred EEeC--CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEE
Confidence 3555 77899999999999977789997543211111 111111123446789999999999999 7999999999
Q ss_pred EEeeCC
Q 018026 295 VNVTGG 300 (362)
Q Consensus 295 I~V~~~ 300 (362)
|.|...
T Consensus 84 V~Vg~~ 89 (116)
T TIGR02375 84 IQVGDP 89 (116)
T ss_pred EEECCC
Confidence 999764
No 17
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.96 E-value=0.0021 Score=56.59 Aligned_cols=77 Identities=17% Similarity=0.345 Sum_probs=48.8
Q ss_pred CceeeeCCEEEEeecCC----CccEEEeCcc-cc-----------C-CCCCCCCCCcC--CCCCcEEEEeeccceEEEcC
Q 018026 49 NQTFTVGDTLVFNFAAG----NHDVTRVTQS-SF-----------N-ACNTTSPLSRT--TNSPASVTLTASGPHYFICS 109 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~----~h~V~~V~~~-~y-----------~-~C~~~~~i~~~--~~G~~~v~l~~~G~~yFic~ 109 (362)
..+++.||+|+|.+.+. .|........ .+ . .|....+.... .....+++++++|.|||+|.
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~ 132 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCT 132 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcC
Confidence 34578999999988764 4555543211 11 0 12211111100 01235677789999999999
Q ss_pred CCCCCCCCCeeeEEee
Q 018026 110 FPGHCLGGQKLAINVS 125 (362)
Q Consensus 110 ~~~HC~~Gmk~~I~V~ 125 (362)
+++|=+.||+..|.|.
T Consensus 133 ~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 133 YPGHAENGMYGKIVVK 148 (148)
T ss_pred ChhHHHCCCEEEEEEC
Confidence 9999999999998873
No 18
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.94 E-value=0.0021 Score=56.56 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=49.4
Q ss_pred CceecCCEEEEEeCCC----CceEEEEccc-cc-----------C-CCCCCCCCcc--CCCCCceEEcCCcccEEEEcCC
Q 018026 223 NNFSVGDILVFDYPAR----VHDVVEVTKA-AY-----------D-SCNSSSTISK--STNPPTRITLGTAGEHYFFCTF 283 (362)
Q Consensus 223 ~~f~vGD~LvF~y~~~----~hsV~~v~~~-~y-----------~-~C~~~~~~~~--~~~G~~~v~l~~~G~~yFic~~ 283 (362)
.+++.||+|.|.+.+. .|.....+.. .+ . .|....+... ......+++.+++|.|||+|..
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~ 133 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTY 133 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCC
Confidence 6789999999988543 4666554321 11 0 1211111000 0112457788899999999999
Q ss_pred CCCCCCCCeEEEEee
Q 018026 284 PGHCSAGQKLAVNVT 298 (362)
Q Consensus 284 ~~HC~~GmKl~I~V~ 298 (362)
++|=+.||+..|.|.
T Consensus 134 pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 134 PGHAENGMYGKIVVK 148 (148)
T ss_pred hhHHHCCCEEEEEEC
Confidence 999999999999873
No 19
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.87 E-value=0.0048 Score=48.62 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=47.7
Q ss_pred cCceeeeCCEEEEeecC-CCccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEee
Q 018026 48 ANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 125 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~~-~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~ 125 (362)
...++++||+|.|.... ..|+|...+....+ =+..+.. ........++++++|.|-|+|...- +||..|.|.
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~~~-~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKGPM-MKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEecCCCCcc-ccccccc-cCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 66889999999997774 47999754322111 0011111 1122336789999999999999843 599999873
No 20
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.82 E-value=0.0059 Score=48.10 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=49.2
Q ss_pred ccccccCCceecCCEEEEEeCC-CCceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEE
Q 018026 216 YQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLA 294 (362)
Q Consensus 216 Y~~Wa~~~~f~vGD~LvF~y~~-~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~ 294 (362)
|.. ...++++||+|.|.-+. ..|+|...+....+ =+.... ........+++++++|.|-|+|..-. +||..
T Consensus 8 F~P--~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~~-~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~ 79 (83)
T TIGR02657 8 YET--PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKGP-MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGK 79 (83)
T ss_pred EcC--CEEEECCCCEEEEEECCCCCccEEecCCCCcc-cccccc-ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEE
Confidence 555 66899999999998764 47999754322111 000111 11122346789999999999999743 59999
Q ss_pred EEee
Q 018026 295 VNVT 298 (362)
Q Consensus 295 I~V~ 298 (362)
|.|.
T Consensus 80 v~V~ 83 (83)
T TIGR02657 80 VVVE 83 (83)
T ss_pred EEEC
Confidence 9884
No 21
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.56 E-value=0.061 Score=49.35 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=49.5
Q ss_pred ceecCCEEEEEeCC---CCceEEEEc-ccccCCCCCC---CCCc-------------cCCCCCce---EEcCCcccEEEE
Q 018026 224 NFSVGDILVFDYPA---RVHDVVEVT-KAAYDSCNSS---STIS-------------KSTNPPTR---ITLGTAGEHYFF 280 (362)
Q Consensus 224 ~f~vGD~LvF~y~~---~~hsV~~v~-~~~y~~C~~~---~~~~-------------~~~~G~~~---v~l~~~G~~yFi 280 (362)
-+-.|-.|.|.|.+ -.|+++.|. ...+..|... +.+- ....|... +.-..+|.||+.
T Consensus 89 ~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~Ywlv 168 (196)
T PF06525_consen 89 YVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLV 168 (196)
T ss_pred EEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEE
Confidence 44579899998843 369998883 3233333221 1110 01122221 212367999999
Q ss_pred cCCCCCCCCCCeEEEEeeCCC
Q 018026 281 CTFPGHCSAGQKLAVNVTGGS 301 (362)
Q Consensus 281 c~~~~HC~~GmKl~I~V~~~~ 301 (362)
|+..||-+.||-..+.|...-
T Consensus 169 C~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 169 CGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred ccCCChhhcCCEEEEEEecCc
Confidence 999999999999999997654
No 22
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.36 E-value=0.066 Score=49.11 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=48.2
Q ss_pred eeCCEEEEeecC---CCccEEEe-CccccCCCCCC---CCCC-------------cCCCCCc-EEEE--eeccceEEEcC
Q 018026 53 TVGDTLVFNFAA---GNHDVTRV-TQSSFNACNTT---SPLS-------------RTTNSPA-SVTL--TASGPHYFICS 109 (362)
Q Consensus 53 ~vGD~L~F~~~~---~~h~V~~V-~~~~y~~C~~~---~~i~-------------~~~~G~~-~v~l--~~~G~~yFic~ 109 (362)
-.|-++.|.|.+ -.|++..| +...+..|..- +.+- ....|.. ...+ ..+|.||+.|+
T Consensus 91 PAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC~ 170 (196)
T PF06525_consen 91 PAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVCG 170 (196)
T ss_pred cCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEcc
Confidence 368888887765 36998877 22333333211 1110 0112221 2222 36899999999
Q ss_pred CCCCCCCCCeeeEEeecCCC
Q 018026 110 FPGHCLGGQKLAINVSARGS 129 (362)
Q Consensus 110 ~~~HC~~Gmk~~I~V~~~~~ 129 (362)
..+|=+.||-..+.|...-.
T Consensus 171 ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 171 IPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred CCChhhcCCEEEEEEecCcc
Confidence 99999999999999986543
No 23
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=94.80 E-value=0.55 Score=44.31 Aligned_cols=78 Identities=23% Similarity=0.349 Sum_probs=43.9
Q ss_pred eecCCEEEE---EeCCCC------ceEEEEcccccCCCCC-CCCCc------------------cCCCCCceEEcCCccc
Q 018026 225 FSVGDILVF---DYPARV------HDVVEVTKAAYDSCNS-SSTIS------------------KSTNPPTRITLGTAGE 276 (362)
Q Consensus 225 f~vGD~LvF---~y~~~~------hsV~~v~~~~y~~C~~-~~~~~------------------~~~~G~~~v~l~~~G~ 276 (362)
.++||.|-+ +|+.+. .-+++|+++.|+.|+. ..+.. .++--..-+....-..
T Consensus 47 v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG~~ 126 (233)
T KOG3858|consen 47 VQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPGHT 126 (233)
T ss_pred eccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCCCe
Confidence 445788876 343321 2356789999999996 22211 1111111122222236
Q ss_pred EEEEcC-----------CCCCCCC-CCeEEEEeeCCCC
Q 018026 277 HYFFCT-----------FPGHCSA-GQKLAVNVTGGSS 302 (362)
Q Consensus 277 ~yFic~-----------~~~HC~~-GmKl~I~V~~~~~ 302 (362)
||||++ .++-|.. .||+.+.|.....
T Consensus 127 YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 127 YYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred EEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 777765 4566754 6999999976543
No 24
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.56 E-value=0.56 Score=41.55 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=49.4
Q ss_pred ccCceeeeCCEEEEeecCCCccEEEe--CccccC-----C--------CCCCCCC--CcCCCCCcEEEEeeccceEEEcC
Q 018026 47 AANQTFTVGDTLVFNFAAGNHDVTRV--TQSSFN-----A--------CNTTSPL--SRTTNSPASVTLTASGPHYFICS 109 (362)
Q Consensus 47 a~~~~f~vGD~L~F~~~~~~h~V~~V--~~~~y~-----~--------C~~~~~i--~~~~~G~~~v~l~~~G~~yFic~ 109 (362)
.++..++-|-+++|.-.+....+.++ .+.+.. . =+..+.+ .-..++..++.++.+|.|=|+|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 36778899999999665433333322 111111 0 0011111 11223445677788999999999
Q ss_pred CCCCCCCCCeeeEEee
Q 018026 110 FPGHCLGGQKLAINVS 125 (362)
Q Consensus 110 ~~~HC~~Gmk~~I~V~ 125 (362)
+++|-+.||...|+|.
T Consensus 142 iPGHy~AGM~g~itV~ 157 (158)
T COG4454 142 IPGHYEAGMVGEITVS 157 (158)
T ss_pred CCCcccCCcEEEEEeC
Confidence 9999999999999985
No 25
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=94.53 E-value=0.056 Score=46.85 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=38.5
Q ss_pred CCCccccCceeeeCCEEEEeecCC---CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCC
Q 018026 42 TYSNWAANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCL 115 (362)
Q Consensus 42 ~y~~Wa~~~~f~vGD~L~F~~~~~---~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~ 115 (362)
+|.-=.+..+++.||.+.+.|.+. .|++.- .+|. ....+....+....++.+++|.|+|+|.. ||.
T Consensus 55 n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 55 NVLNEPEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---ISEVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred eeEEcCCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cceEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 344444778899999999977642 244432 2222 11111111122234666899999999987 663
No 26
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=94.22 E-value=0.18 Score=47.43 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=24.0
Q ss_pred ceeeeCCEEEE---eecCCCc------cEEEeCccccCCCCC
Q 018026 50 QTFTVGDTLVF---NFAAGNH------DVTRVTQSSFNACNT 82 (362)
Q Consensus 50 ~~f~vGD~L~F---~~~~~~h------~V~~V~~~~y~~C~~ 82 (362)
+..++||.|-+ +|+.+.- -++.|++..|+.|+.
T Consensus 45 I~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~ 86 (233)
T KOG3858|consen 45 IYVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCEL 86 (233)
T ss_pred EEeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhc
Confidence 45677999877 5664332 246789999999996
No 27
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=93.94 E-value=0.022 Score=46.54 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=29.6
Q ss_pred cCceeeeCCEEEEeecC---CCccEEEeCccccCCCCCCCCCCcCCCCC-cEEEE--eeccceEEEcCCCCCCCCCCeee
Q 018026 48 ANQTFTVGDTLVFNFAA---GNHDVTRVTQSSFNACNTTSPLSRTTNSP-ASVTL--TASGPHYFICSFPGHCLGGQKLA 121 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~~---~~h~V~~V~~~~y~~C~~~~~i~~~~~G~-~~v~l--~~~G~~yFic~~~~HC~~Gmk~~ 121 (362)
+..+++.|+.+.+.|.+ ..|++.. .+.+.+ ....-|. .++++ +++|.|=|+|+++.+ ||..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~~~~~--------~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~ 101 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVI-PDLGIS--------KVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGT 101 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEE-GGGTEE--------EEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB--
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEE-CCCceE--------EEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceec
Confidence 67899999955555543 3466532 221111 1122222 44555 899999999997553 6666
Q ss_pred EEe
Q 018026 122 INV 124 (362)
Q Consensus 122 I~V 124 (362)
|.|
T Consensus 102 liV 104 (104)
T PF13473_consen 102 LIV 104 (104)
T ss_dssp ---
T ss_pred ccC
Confidence 554
No 28
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=93.12 E-value=0.038 Score=48.49 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=24.4
Q ss_pred CceecCCEEEEE---eCCC--------CceEEEEcccccCCCCCC
Q 018026 223 NNFSVGDILVFD---YPAR--------VHDVVEVTKAAYDSCNSS 256 (362)
Q Consensus 223 ~~f~vGD~LvF~---y~~~--------~hsV~~v~~~~y~~C~~~ 256 (362)
..+++||.|-|- |+.. ...+++|++++|+.|+..
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~ 68 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLT 68 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCC
Confidence 467899999884 4333 457888999999999963
No 29
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=92.58 E-value=0.12 Score=44.81 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=36.3
Q ss_pred cCCceecCCEEEEEeCCC---CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCC
Q 018026 221 RNNNFSVGDILVFDYPAR---VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCS 288 (362)
Q Consensus 221 ~~~~f~vGD~LvF~y~~~---~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~ 288 (362)
+..+++.||.|.+.+.+. .|.+.. .+|+ ....+....+-..+++.+++|.|+|+|+. ||.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---ISEVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cceEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 678999999999877532 244422 2221 11111111222235677999999999997 774
No 30
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.33 E-value=0.46 Score=42.06 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=50.5
Q ss_pred cCCceecCCEEEEEeCCCCceEEEEc--ccccCC-------------CCCCCC--CccCCCCCceEEcCCcccEEEEcCC
Q 018026 221 RNNNFSVGDILVFDYPARVHDVVEVT--KAAYDS-------------CNSSST--ISKSTNPPTRITLGTAGEHYFFCTF 283 (362)
Q Consensus 221 ~~~~f~vGD~LvF~y~~~~hsV~~v~--~~~y~~-------------C~~~~~--~~~~~~G~~~v~l~~~G~~yFic~~ 283 (362)
++..++-|.+++|.-+.....+++++ +.+... -+..+. +....++...+.+..+|.|=|+|.+
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~i 142 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACNI 142 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEecC
Confidence 56778888888886654433333331 111110 011111 1223444567888999999999999
Q ss_pred CCCCCCCCeEEEEee
Q 018026 284 PGHCSAGQKLAVNVT 298 (362)
Q Consensus 284 ~~HC~~GmKl~I~V~ 298 (362)
++|-+.||...|+|.
T Consensus 143 PGHy~AGM~g~itV~ 157 (158)
T COG4454 143 PGHYEAGMVGEITVS 157 (158)
T ss_pred CCcccCCcEEEEEeC
Confidence 999999999999996
No 31
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=91.64 E-value=0.67 Score=42.16 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=27.0
Q ss_pred eeccceEEEcCCCCCCCCCCeeeEEeecCCC
Q 018026 99 TASGPHYFICSFPGHCLGGQKLAINVSARGS 129 (362)
Q Consensus 99 ~~~G~~yFic~~~~HC~~Gmk~~I~V~~~~~ 129 (362)
..+|.||+.|+..+|-+.||-..+.|...-.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 4789999999999999999999988876533
No 32
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=90.09 E-value=0.45 Score=43.20 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=26.5
Q ss_pred CCcccEEEEcCCCCCCCCCCeEEEEeeCCC
Q 018026 272 GTAGEHYFFCTFPGHCSAGQKLAVNVTGGS 301 (362)
Q Consensus 272 ~~~G~~yFic~~~~HC~~GmKl~I~V~~~~ 301 (362)
..+|.||+.|+..||-+.||=..+.|...-
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 368999999999999999999888887654
No 33
>PLN02604 oxidoreductase
Probab=89.43 E-value=1.8 Score=46.08 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=50.3
Q ss_pred cCceeeeCCEEEEeecCCC----ccEEE--eC--ccc-cCCCC--CCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCC
Q 018026 48 ANQTFTVGDTLVFNFAAGN----HDVTR--VT--QSS-FNACN--TTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLG 116 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~~~~----h~V~~--V~--~~~-y~~C~--~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~ 116 (362)
-..+++.||+|++++.+.. |++.. +. ... +|.=. ..-+|.-..+-...|+++.+|++||-|....|-..
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 134 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREA 134 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhC
Confidence 4578999999999887642 33321 00 011 11100 00122222222346778899999999999999999
Q ss_pred CCeeeEEeecC
Q 018026 117 GQKLAINVSAR 127 (362)
Q Consensus 117 Gmk~~I~V~~~ 127 (362)
||...|.|...
T Consensus 135 Gl~G~liV~~~ 145 (566)
T PLN02604 135 GLYGSIRVSLP 145 (566)
T ss_pred CCeEEEEEEec
Confidence 99999999754
No 34
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=89.16 E-value=0.79 Score=45.07 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=47.6
Q ss_pred CceeeeCCEEEEeecCC-----CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCC----CCCCCCCCe
Q 018026 49 NQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSF----PGHCLGGQK 119 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~-----~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~----~~HC~~Gmk 119 (362)
..+++.||+|+.++.+. .|++..=-....+.=.....+.-..+-...|+++.+|.+||.|.. ..|=..||.
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~ 139 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGALGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMN 139 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCccCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcc
Confidence 46889999999988764 355532100000000000001111222246777889999999995 347788999
Q ss_pred eeEEeecC
Q 018026 120 LAINVSAR 127 (362)
Q Consensus 120 ~~I~V~~~ 127 (362)
..|.|...
T Consensus 140 G~liV~~~ 147 (311)
T TIGR02376 140 GAIMVLPR 147 (311)
T ss_pred eEEEeecc
Confidence 99999753
No 35
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=88.25 E-value=0.34 Score=39.47 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=30.0
Q ss_pred cCCceecCCEEEEEeC---CCCceEEEEcccccCCCCCCCCCccCCCCC-ceEEc--CCcccEEEEcCCCCCCCCCCeEE
Q 018026 221 RNNNFSVGDILVFDYP---ARVHDVVEVTKAAYDSCNSSSTISKSTNPP-TRITL--GTAGEHYFFCTFPGHCSAGQKLA 294 (362)
Q Consensus 221 ~~~~f~vGD~LvF~y~---~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~-~~v~l--~~~G~~yFic~~~~HC~~GmKl~ 294 (362)
+..+++.|+.+.+.+. ...|+++. .+-+ -......|. .++++ .++|.|=|+|+...+ ||..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~~~--------~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~ 101 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVI-PDLG--------ISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGT 101 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEE-GGGT--------EEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB--
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEE-CCCc--------eEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceec
Confidence 6789999995555553 33465532 2211 111222232 34555 899999999997552 7766
Q ss_pred EEe
Q 018026 295 VNV 297 (362)
Q Consensus 295 I~V 297 (362)
|.|
T Consensus 102 liV 104 (104)
T PF13473_consen 102 LIV 104 (104)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 36
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=88.15 E-value=0.093 Score=46.10 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=45.2
Q ss_pred CceeeeCCEEEE---eecCC--------CccEEEeCccccCCCCCCCCC-C-------cCCCCCcEEEEe----------
Q 018026 49 NQTFTVGDTLVF---NFAAG--------NHDVTRVTQSSFNACNTTSPL-S-------RTTNSPASVTLT---------- 99 (362)
Q Consensus 49 ~~~f~vGD~L~F---~~~~~--------~h~V~~V~~~~y~~C~~~~~i-~-------~~~~G~~~v~l~---------- 99 (362)
...+++||.|-| +|... ...+++|++.+|+.|+..... . ....|+..|++.
T Consensus 23 ~i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G 102 (145)
T PF00812_consen 23 VIEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLG 102 (145)
T ss_dssp EEEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTS
T ss_pred EEEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCC
Confidence 356789999988 55443 456788999999999963211 1 111234444441
Q ss_pred ---ecc-ceEEEcCC-----------CCCCCC-CCeeeEEee
Q 018026 100 ---ASG-PHYFICSF-----------PGHCLG-GQKLAINVS 125 (362)
Q Consensus 100 ---~~G-~~yFic~~-----------~~HC~~-Gmk~~I~V~ 125 (362)
.+| .||||+.- +|-|.. .|||.|.|.
T Consensus 103 ~EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 103 LEFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp SS--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eeecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 234 67888753 222654 688888874
No 37
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=87.14 E-value=1.1 Score=43.98 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=48.5
Q ss_pred CCceecCCEEEEEeCCC-----CceEEEEcccccCCCCCCCCCccCCCC---CceEEcCCcccEEEEcCC----CCCCCC
Q 018026 222 NNNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTF----PGHCSA 289 (362)
Q Consensus 222 ~~~f~vGD~LvF~y~~~-----~hsV~~v~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~----~~HC~~ 289 (362)
..+++.||.|++.+.+. .|++..=-....+ ..........| ...|+++.+|.+||.|.. ..|=..
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~ 136 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS 136 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence 36789999999888654 4655431100000 00111112222 246788899999999995 457788
Q ss_pred CCeEEEEeeCCC
Q 018026 290 GQKLAVNVTGGS 301 (362)
Q Consensus 290 GmKl~I~V~~~~ 301 (362)
||...|.|....
T Consensus 137 Gl~G~liV~~~~ 148 (311)
T TIGR02376 137 GMNGAIMVLPRE 148 (311)
T ss_pred CcceEEEeeccC
Confidence 999999998643
No 38
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=86.29 E-value=0.33 Score=40.79 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=48.7
Q ss_pred CceeeeCCEEEEeecCC---CccEEE----eCcc-ccCC--CCCCCCCCcCCCCCcEEEEee-ccceEEEcCCCCCCCCC
Q 018026 49 NQTFTVGDTLVFNFAAG---NHDVTR----VTQS-SFNA--CNTTSPLSRTTNSPASVTLTA-SGPHYFICSFPGHCLGG 117 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~---~h~V~~----V~~~-~y~~--C~~~~~i~~~~~G~~~v~l~~-~G~~yFic~~~~HC~~G 117 (362)
.++++.||+|.+++.+. .+++.. +... ..|. .....++....+-...|+++. +|.+||-|....|=..|
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G 106 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG 106 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence 57899999999998853 344432 1111 0111 111122222222235688888 99999999998864589
Q ss_pred CeeeEEeecC
Q 018026 118 QKLAINVSAR 127 (362)
Q Consensus 118 mk~~I~V~~~ 127 (362)
|..+|.|...
T Consensus 107 L~G~~iV~~~ 116 (117)
T PF07732_consen 107 LYGAIIVEPP 116 (117)
T ss_dssp EEEEEEEE-T
T ss_pred CEEEEEEcCC
Confidence 9999998753
No 39
>PLN02354 copper ion binding / oxidoreductase
Probab=85.90 E-value=5.5 Score=42.39 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=50.6
Q ss_pred CceeeeCCEEEEeecCC--------CccEEEeCccccCC-CCCCCCCCcCCCCCcEEEE-eeccceEEEcCCCCCCCCCC
Q 018026 49 NQTFTVGDTLVFNFAAG--------NHDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQ 118 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~--------~h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~Gm 118 (362)
.++++.||+|+.+..++ -|.+.|-.....|. -.+--+|.-..+-..+|++ +..|++||-+....+-..||
T Consensus 59 ~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl 138 (552)
T PLN02354 59 NINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGG 138 (552)
T ss_pred cEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCc
Confidence 35789999999887653 14454421111221 1111134333333456777 46899999999988988999
Q ss_pred eeeEEeecC
Q 018026 119 KLAINVSAR 127 (362)
Q Consensus 119 k~~I~V~~~ 127 (362)
..+|.|...
T Consensus 139 ~G~lII~~~ 147 (552)
T PLN02354 139 FGGLRVNSR 147 (552)
T ss_pred cceEEEcCC
Confidence 999999754
No 40
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=85.16 E-value=5.5 Score=34.13 Aligned_cols=29 Identities=38% Similarity=0.708 Sum_probs=21.7
Q ss_pred cEEEEe----eccc-eEEEcCCCCCCCCCCeeeEE
Q 018026 94 ASVTLT----ASGP-HYFICSFPGHCLGGQKLAIN 123 (362)
Q Consensus 94 ~~v~l~----~~G~-~yFic~~~~HC~~Gmk~~I~ 123 (362)
+.|+++ ++|. |=|||++++|= ..||..+.
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~-~~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHW-AMMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcH-HhceEEEe
Confidence 456665 3675 77999999996 47987764
No 41
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=85.01 E-value=0.69 Score=34.37 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=24.4
Q ss_pred CchHHHHHHHHHHHHhhhhccceEEEecCCCC
Q 018026 1 MFNRFFLAAIAIAALVQSSTAQTRHVVGDALG 32 (362)
Q Consensus 1 m~~~~~l~~~~~a~l~~~~~a~~~~~VGg~~G 32 (362)
||.|++++.|+.++|+....++-+|.-|+.-.
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~GeeP~ 32 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPGEEPS 32 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCCCCCC
Confidence 99999988887666666666668898887633
No 42
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=83.10 E-value=8 Score=33.15 Aligned_cols=29 Identities=45% Similarity=0.837 Sum_probs=21.5
Q ss_pred ceEEcC----Cccc-EEEEcCCCCCCCCCCeEEEE
Q 018026 267 TRITLG----TAGE-HYFFCTFPGHCSAGQKLAVN 296 (362)
Q Consensus 267 ~~v~l~----~~G~-~yFic~~~~HC~~GmKl~I~ 296 (362)
++|+++ ++|. |=|||+++||=. .||..+.
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 445553 4675 779999999986 7988765
No 43
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.77 E-value=2 Score=46.15 Aligned_cols=71 Identities=13% Similarity=0.255 Sum_probs=42.7
Q ss_pred cCceeeeCCEEEEeecCC------CccEEEeCccccCCCCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCC---CCC
Q 018026 48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCL---GGQ 118 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~~~------~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~---~Gm 118 (362)
+..++++||.+.|...+- .|.... ..|.-- --+.-..+....|+.+++|.|||+|+. .|. .+|
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~nI~---~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~~M 626 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYGVN---MEVAPQATASVTFTADKPGVYWYYCTW--FCHALHMEM 626 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceee---cccCcc---EEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcccc
Confidence 467899999999999762 233321 111100 000011122245677899999999997 343 378
Q ss_pred eeeEEeec
Q 018026 119 KLAINVSA 126 (362)
Q Consensus 119 k~~I~V~~ 126 (362)
+..|.|..
T Consensus 627 ~G~~iVep 634 (635)
T PRK02888 627 RGRMLVEP 634 (635)
T ss_pred eEEEEEEe
Confidence 88888863
No 44
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.54 E-value=2.3 Score=45.63 Aligned_cols=71 Identities=15% Similarity=0.302 Sum_probs=44.0
Q ss_pred cCCceecCCEEEEEeCCC------CceEEEEcccccCCCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCC---CCC
Q 018026 221 RNNNFSVGDILVFDYPAR------VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCS---AGQ 291 (362)
Q Consensus 221 ~~~~f~vGD~LvF~y~~~------~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~---~Gm 291 (362)
+..++++||.|.|...+- .|.... ..|+- .--+........+|+.+++|.|||+|+. .|. .+|
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~nI---~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~~M 626 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYGV---NMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHMEM 626 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceee---cccCc---cEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcccc
Confidence 557899999999999652 233321 11110 0001111222345778999999999997 344 379
Q ss_pred eEEEEeeC
Q 018026 292 KLAVNVTG 299 (362)
Q Consensus 292 Kl~I~V~~ 299 (362)
+..|.|.+
T Consensus 627 ~G~~iVep 634 (635)
T PRK02888 627 RGRMLVEP 634 (635)
T ss_pred eEEEEEEe
Confidence 99999864
No 45
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=80.10 E-value=20 Score=34.65 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=21.1
Q ss_pred CCceecCCEEEEEeCC-----------CCceEEEE---cccccCCCCCCCC
Q 018026 222 NNNFSVGDILVFDYPA-----------RVHDVVEV---TKAAYDSCNSSST 258 (362)
Q Consensus 222 ~~~f~vGD~LvF~y~~-----------~~hsV~~v---~~~~y~~C~~~~~ 258 (362)
..++.-|-.|.-+... .+++++.+ ++.-|..-+..|.
T Consensus 132 a~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae~dn~ 182 (297)
T PF07174_consen 132 ASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAEPDNT 182 (297)
T ss_pred cceeecceeeeccCCCCCCCCCCCCCcCCCceEEeccccccccccccCChH
Confidence 3455557777766431 24555544 6667776665553
No 46
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=79.63 E-value=3.5 Score=43.67 Aligned_cols=80 Identities=10% Similarity=0.099 Sum_probs=51.2
Q ss_pred cCceeeeCCEEEEeecCCC----ccEEE----eCcccc-CC--CCCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCC
Q 018026 48 ANQTFTVGDTLVFNFAAGN----HDVTR----VTQSSF-NA--CNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLG 116 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~~~~----h~V~~----V~~~~y-~~--C~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~ 116 (362)
-.++++.||.|++++.+.. +++.. +....+ |. ....-+|.-..+-...|+++.+|++||-|....|-..
T Consensus 32 P~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 111 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSA 111 (541)
T ss_pred CeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhc
Confidence 3568999999999887642 22321 111111 11 0011123222333356788899999999999999999
Q ss_pred CCeeeEEeecC
Q 018026 117 GQKLAINVSAR 127 (362)
Q Consensus 117 Gmk~~I~V~~~ 127 (362)
||...|.|...
T Consensus 112 Gl~G~liV~~~ 122 (541)
T TIGR03388 112 GLYGSLIVDVP 122 (541)
T ss_pred cceEEEEEecC
Confidence 99999999854
No 47
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=79.44 E-value=0.66 Score=38.98 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=49.0
Q ss_pred CCceecCCEEEEEeCC---CCceEEEE----ccc-ccC--CCCCCCCCccCCCCCceEEcCC-cccEEEEcCCCCCCCCC
Q 018026 222 NNNFSVGDILVFDYPA---RVHDVVEV----TKA-AYD--SCNSSSTISKSTNPPTRITLGT-AGEHYFFCTFPGHCSAG 290 (362)
Q Consensus 222 ~~~f~vGD~LvF~y~~---~~hsV~~v----~~~-~y~--~C~~~~~~~~~~~G~~~v~l~~-~G~~yFic~~~~HC~~G 290 (362)
-++++.||+|.+.+.+ ..+++.-= ... ..| ......++....+-...++++. +|.+||-|-..+|=..|
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G 106 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG 106 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence 4788999999999853 24555531 111 011 1111122322222235688888 99999999998854489
Q ss_pred CeEEEEeeCC
Q 018026 291 QKLAVNVTGG 300 (362)
Q Consensus 291 mKl~I~V~~~ 300 (362)
|-..|.|...
T Consensus 107 L~G~~iV~~~ 116 (117)
T PF07732_consen 107 LYGAIIVEPP 116 (117)
T ss_dssp EEEEEEEE-T
T ss_pred CEEEEEEcCC
Confidence 9999988753
No 48
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=76.36 E-value=7.1 Score=41.96 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=51.3
Q ss_pred CceeeeCCEEEEeecCCC--------ccEEEeCccccCC-CCCCCCCCcCCCCCcEEEE-eeccceEEEcCCCCCCCCCC
Q 018026 49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQ 118 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~~--------h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~Gm 118 (362)
.++++.||+|+.+..+.. |.+.|....-.|. ..+.-+|.-..+-..+|++ +..|++||-+....+-..|+
T Consensus 61 tI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl 140 (596)
T PLN00044 61 ALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGG 140 (596)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcC
Confidence 358899999999876532 4544321111111 1111144433444467888 47999999999998889999
Q ss_pred eeeEEeecC
Q 018026 119 KLAINVSAR 127 (362)
Q Consensus 119 k~~I~V~~~ 127 (362)
..+|.|...
T Consensus 141 ~GalII~~~ 149 (596)
T PLN00044 141 YGAITINNR 149 (596)
T ss_pred eeEEEEcCc
Confidence 999999764
No 49
>PLN02835 oxidoreductase
Probab=73.65 E-value=11 Score=40.12 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=50.4
Q ss_pred CceeeeCCEEEEeecCCC--------ccEEEeCccccCC-CCCCCCCCcCCCCCcEEEE-eeccceEEEcCCCCCCCCCC
Q 018026 49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQ 118 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~~--------h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~Gm 118 (362)
.++++.||+|+.+..++- |.+.+......|. ...--+|.-..+-...|++ +..|+|||-|....|-..|+
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl 140 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG 140 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence 468899999999887531 4444321111221 1111244443444456776 46999999999888888999
Q ss_pred eeeEEeec
Q 018026 119 KLAINVSA 126 (362)
Q Consensus 119 k~~I~V~~ 126 (362)
...|.|..
T Consensus 141 ~G~lIV~~ 148 (539)
T PLN02835 141 FGAINVYE 148 (539)
T ss_pred cceeEEeC
Confidence 99999964
No 50
>PLN02191 L-ascorbate oxidase
Probab=73.61 E-value=15 Score=39.38 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=49.3
Q ss_pred CceeeeCCEEEEeecCCC---------ccEEEeCccc-cCC-CC-CCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCC
Q 018026 49 NQTFTVGDTLVFNFAAGN---------HDVTRVTQSS-FNA-CN-TTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLG 116 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~~---------h~V~~V~~~~-y~~-C~-~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~ 116 (362)
.++++.||+|+.+..+.. |.+.+ .... +|. -. ..-+|.-..+-...|+++..|++||-|....+-..
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~-~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~ 133 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQ-KGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSA 133 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCC-CCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhC
Confidence 468899999999887531 22221 1111 111 00 01123333333356888899999999999999999
Q ss_pred CCeeeEEeec
Q 018026 117 GQKLAINVSA 126 (362)
Q Consensus 117 Gmk~~I~V~~ 126 (362)
||...|.|..
T Consensus 134 Gl~G~liV~~ 143 (574)
T PLN02191 134 GLYGSLIVDV 143 (574)
T ss_pred CCEEEEEEcc
Confidence 9999999964
No 51
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=72.08 E-value=20 Score=36.30 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=37.7
Q ss_pred cCceeeeCCEEEEeecCCCccEEEeCccccCC-C--CCCCCCCcCCCCCcEEEEeeccceEEEcCCCCCCCCCCeeeEEe
Q 018026 48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNA-C--NTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~-C--~~~~~i~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V 124 (362)
+..++..|+ ++|.-.+..-.+.|+ ..++. - .-...|.-..++...++| ++|.|-|+|+. | ..|+..|.|
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Ef--e~~~~~~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~C~~--~--~~~~g~l~V 115 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEW--EILKGVMVVEERENIAPGFSQKMTANL-QPGEYDMTCGL--L--TNPKGKLIV 115 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceE--EeeccccccccccccCCCCceEEEEec-CCceEEeecCc--C--CCCCceEEE
Confidence 567889997 556543322333221 11110 0 001122222233345556 79999999966 5 446778888
Q ss_pred ecC
Q 018026 125 SAR 127 (362)
Q Consensus 125 ~~~ 127 (362)
...
T Consensus 116 tg~ 118 (375)
T PRK10378 116 KGE 118 (375)
T ss_pred eCC
Confidence 643
No 52
>PLN02168 copper ion binding / pectinesterase
Probab=71.27 E-value=12 Score=39.71 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=51.9
Q ss_pred CceeeeCCEEEEeecCCC--------ccEEEeCccccCC-CCCCCCCCcCCCCCcEEEEe-eccceEEEcCCCCCCCCCC
Q 018026 49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTLT-ASGPHYFICSFPGHCLGGQ 118 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~~--------h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~l~-~~G~~yFic~~~~HC~~Gm 118 (362)
.++++.||+|+.+..++. |.+.+-.....|. ....-+|.-..+-..+|++. ..|++||-+....+=..|+
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 468999999999887632 5544322211222 11112444444444678884 7999999998877778899
Q ss_pred eeeEEeecC
Q 018026 119 KLAINVSAR 127 (362)
Q Consensus 119 k~~I~V~~~ 127 (362)
...|.|...
T Consensus 138 ~G~lII~~~ 146 (545)
T PLN02168 138 YGAIRIYNP 146 (545)
T ss_pred eeEEEEcCC
Confidence 999999754
No 53
>PLN02792 oxidoreductase
Probab=69.37 E-value=14 Score=39.22 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=49.8
Q ss_pred CceeeeCCEEEEeecCCC--------ccEEEeCccccCC-CCCCCCCCcCCCCCcEEEEe-eccceEEEcCCCCCCCCCC
Q 018026 49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTLT-ASGPHYFICSFPGHCLGGQ 118 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~~--------h~V~~V~~~~y~~-C~~~~~i~~~~~G~~~v~l~-~~G~~yFic~~~~HC~~Gm 118 (362)
.++++.||+|+.+..+.. |.+.+....-.|. -...-+|.-..+-..+|+++ ..|++||-+....+-..|+
T Consensus 48 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 127 (536)
T PLN02792 48 EIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGG 127 (536)
T ss_pred cEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhccc
Confidence 468899999999887631 4554421111111 11112444434444578884 7999999999888878889
Q ss_pred eeeEEeec
Q 018026 119 KLAINVSA 126 (362)
Q Consensus 119 k~~I~V~~ 126 (362)
...|.|..
T Consensus 128 ~G~liI~~ 135 (536)
T PLN02792 128 YGSLRIYS 135 (536)
T ss_pred ccceEEeC
Confidence 88887754
No 54
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=66.81 E-value=7.9 Score=40.97 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=51.6
Q ss_pred cCCceecCCEEEEEeCCCC----ceEEE--Ec--cccc-CC--CCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCC
Q 018026 221 RNNNFSVGDILVFDYPARV----HDVVE--VT--KAAY-DS--CNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSA 289 (362)
Q Consensus 221 ~~~~f~vGD~LvF~y~~~~----hsV~~--v~--~~~y-~~--C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~ 289 (362)
...+++.||.|+++..++. ++++. +. ...| |. .....+|....+-..+|+++.+|.+||-|-...|-..
T Consensus 32 P~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 111 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSA 111 (541)
T ss_pred CeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhc
Confidence 4478899999999885442 33331 11 1111 10 1111123222222346888999999999999999999
Q ss_pred CCeEEEEeeCCC
Q 018026 290 GQKLAVNVTGGS 301 (362)
Q Consensus 290 GmKl~I~V~~~~ 301 (362)
||...|.|....
T Consensus 112 Gl~G~liV~~~~ 123 (541)
T TIGR03388 112 GLYGSLIVDVPD 123 (541)
T ss_pred cceEEEEEecCC
Confidence 999999998653
No 55
>PLN02991 oxidoreductase
Probab=66.52 E-value=32 Score=36.60 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=49.8
Q ss_pred CceeeeCCEEEEeecCCC--------ccEEEeCccccCCC-CCCCCCCcCCCCCcEEEE-eeccceEEEcCCCCCCCCCC
Q 018026 49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNAC-NTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQ 118 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~~--------h~V~~V~~~~y~~C-~~~~~i~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~Gm 118 (362)
.++++.||+|+.+..+.. |.+.+......|.= ..--+|.-..+-...|++ +..|++||-+....+-..|+
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 139 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGG 139 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCC
Confidence 468899999999887642 44443211112210 011134333334457787 47999999998877777799
Q ss_pred eeeEEeecC
Q 018026 119 KLAINVSAR 127 (362)
Q Consensus 119 k~~I~V~~~ 127 (362)
...|.|...
T Consensus 140 ~G~lIV~~~ 148 (543)
T PLN02991 140 FGAIRISSR 148 (543)
T ss_pred eeeEEEeCC
Confidence 888888754
No 56
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=64.41 E-value=10 Score=32.01 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=40.0
Q ss_pred cCCceecCCEEEEEeCCC--CceEEEEcccccC-CCCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCC---CeEE
Q 018026 221 RNNNFSVGDILVFDYPAR--VHDVVEVTKAAYD-SCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAG---QKLA 294 (362)
Q Consensus 221 ~~~~f~vGD~LvF~y~~~--~hsV~~v~~~~y~-~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~G---mKl~ 294 (362)
+...+..|+.+.|...+. .|+... -+-..+ .|.+ ...-...++.+++|.+++.|+. .|..| |++.
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~i-p~~~~k~d~~P------G~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~~~ 116 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWI-PELGIKMDAIP------GRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMPGK 116 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEE-TTCTEEEEEBT------TCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-EEE
T ss_pred ceecccccceEeEEEEcCCccccccc-cccCccccccc------ccceeeeeeeccCCcEEEcCcc--ccCcCcCCCeEE
Confidence 345678899999988543 355542 111111 1111 0111235777999999999996 88877 8888
Q ss_pred EEe
Q 018026 295 VNV 297 (362)
Q Consensus 295 I~V 297 (362)
|.|
T Consensus 117 v~V 119 (120)
T PF00116_consen 117 VIV 119 (120)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
No 57
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=62.76 E-value=24 Score=36.61 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=18.0
Q ss_pred ccccCCceecCCEEEEEeCCCCceEEE
Q 018026 218 NWARNNNFSVGDILVFDYPARVHDVVE 244 (362)
Q Consensus 218 ~Wa~~~~f~vGD~LvF~y~~~~hsV~~ 244 (362)
.|..+.+.+.==.++|--.++..+|..
T Consensus 79 ~w~snn~~~A~p~f~~Pvp~G~~sV~i 105 (465)
T PF01690_consen 79 GWYSNNSVKAIPMFVFPVPKGKWSVEI 105 (465)
T ss_pred eeEecCcceeeeEEEEecCCceEEEEE
Confidence 455666666666667777788887743
No 58
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=61.89 E-value=6.8 Score=30.40 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=13.8
Q ss_pred cCCceecCCEEEE-EeCCC
Q 018026 221 RNNNFSVGDILVF-DYPAR 238 (362)
Q Consensus 221 ~~~~f~vGD~LvF-~y~~~ 238 (362)
++..|+|||.|++ .|+.+
T Consensus 25 NDRdf~VGD~L~L~E~~~~ 43 (72)
T PF12961_consen 25 NDRDFQVGDILVLREWDNG 43 (72)
T ss_pred cCCCCCCCCEEEEEEecCC
Confidence 4589999999998 45444
No 59
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=60.63 E-value=6.9 Score=40.50 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=8.7
Q ss_pred CCCCCCCeEEEEeeC
Q 018026 285 GHCSAGQKLAVNVTG 299 (362)
Q Consensus 285 ~HC~~GmKl~I~V~~ 299 (362)
.+|+-|| +.|.+..
T Consensus 221 k~mE~G~-IsV~~DE 234 (465)
T PF01690_consen 221 KDMEFGS-ISVSLDE 234 (465)
T ss_pred cceeeee-EEEEEec
Confidence 6788885 3455544
No 60
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=60.42 E-value=23 Score=37.45 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=46.5
Q ss_pred CceeeeCCEEEEeecCC---C-----ccEEEeCccccCC--CCCCCCCCcCCCCCcEEEE-eeccceEEEcCCCCCCCCC
Q 018026 49 NQTFTVGDTLVFNFAAG---N-----HDVTRVTQSSFNA--CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGG 117 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~---~-----h~V~~V~~~~y~~--C~~~~~i~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~G 117 (362)
.++++.||+|+.+..+. . |.+.+....-.|. ..+--+|.-..+-...|++ +..|++||-|.... ...|
T Consensus 35 ~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~-~~~G 113 (539)
T TIGR03389 35 TLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISW-LRAT 113 (539)
T ss_pred EEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchh-hhcc
Confidence 46889999999987653 2 2332211111111 1111133333333356777 47899999999854 4569
Q ss_pred CeeeEEeecC
Q 018026 118 QKLAINVSAR 127 (362)
Q Consensus 118 mk~~I~V~~~ 127 (362)
|...|.|...
T Consensus 114 l~G~lIV~~~ 123 (539)
T TIGR03389 114 VYGAIVILPK 123 (539)
T ss_pred ceEEEEEcCC
Confidence 9999999754
No 61
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=59.18 E-value=5.9 Score=26.60 Aligned_cols=19 Identities=32% Similarity=0.903 Sum_probs=11.4
Q ss_pred CCccccCceeeeCCEEEEe
Q 018026 43 YSNWAANQTFTVGDTLVFN 61 (362)
Q Consensus 43 y~~Wa~~~~f~vGD~L~F~ 61 (362)
|..|..++....||+|.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 4679999999999999873
No 62
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=59.07 E-value=29 Score=37.24 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=52.9
Q ss_pred cccCCCCCCCccccccCCceecCCEEEEEeCCC---CceEEE------Ecccc--cCCCCCCCCCccCCCC--CceEEcC
Q 018026 206 WTVPPNASVGYQNWARNNNFSVGDILVFDYPAR---VHDVVE------VTKAA--YDSCNSSSTISKSTNP--PTRITLG 272 (362)
Q Consensus 206 W~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~---~hsV~~------v~~~~--y~~C~~~~~~~~~~~G--~~~v~l~ 272 (362)
|.+. ...|.. ....+++.||.|++.+.+. .|.++. |...+ |..= .+.+...-.+ ...|.++
T Consensus 488 wtiN---G~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~~--~dTv~V~Pg~t~~~~f~ad 561 (587)
T TIGR01480 488 WSFD---GEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQVR--KHTVDVPPGGKRSFRVTAD 561 (587)
T ss_pred EEEC---CccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCccccc--CCceeeCCCCEEEEEEECC
Confidence 8873 233443 2457899999999999643 344432 21111 1100 0111111122 2356778
Q ss_pred CcccEEEEcCCCCCCCCCCeEEEEe
Q 018026 273 TAGEHYFFCTFPGHCSAGQKLAVNV 297 (362)
Q Consensus 273 ~~G~~yFic~~~~HC~~GmKl~I~V 297 (362)
.+|.++|-|-...|=+.||--.|.|
T Consensus 562 ~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 562 ALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 9999999999999999999888876
No 63
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=58.72 E-value=7.1 Score=30.28 Aligned_cols=18 Identities=39% Similarity=0.822 Sum_probs=13.6
Q ss_pred cCceeeeCCEEEE-eecCC
Q 018026 48 ANQTFTVGDTLVF-NFAAG 65 (362)
Q Consensus 48 ~~~~f~vGD~L~F-~~~~~ 65 (362)
+...|+|||.|++ .|..+
T Consensus 25 NDRdf~VGD~L~L~E~~~~ 43 (72)
T PF12961_consen 25 NDRDFQVGDILVLREWDNG 43 (72)
T ss_pred cCCCCCCCCEEEEEEecCC
Confidence 3467999999998 56544
No 64
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=58.68 E-value=7.9 Score=31.57 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=6.4
Q ss_pred CchHHHHHHH
Q 018026 1 MFNRFFLAAI 10 (362)
Q Consensus 1 m~~~~~l~~~ 10 (362)
|+.|.+|||.
T Consensus 1 MaSK~~llL~ 10 (95)
T PF07172_consen 1 MASKAFLLLG 10 (95)
T ss_pred CchhHHHHHH
Confidence 8877755543
No 65
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=58.11 E-value=8.4 Score=32.22 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=19.5
Q ss_pred CceeeeCCEEEE-eecCCCccEEEeC-ccccCC
Q 018026 49 NQTFTVGDTLVF-NFAAGNHDVTRVT-QSSFNA 79 (362)
Q Consensus 49 ~~~f~vGD~L~F-~~~~~~h~V~~V~-~~~y~~ 79 (362)
.++|++||.|+| +++.+.--+++|. -..|++
T Consensus 29 r~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 29 RQQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hhcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 367999999999 4444333445553 346654
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=57.69 E-value=13 Score=31.33 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=39.7
Q ss_pred cCceeeeCCEEEEeecCC--CccEEEeCccccCCCCCCCCCCcCCCCC---cEEEEeeccceEEEcCCCCCCCCC---Ce
Q 018026 48 ANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFPGHCLGG---QK 119 (362)
Q Consensus 48 ~~~~f~vGD~L~F~~~~~--~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~l~~~G~~yFic~~~~HC~~G---mk 119 (362)
+...+..|+.+.|+..+. .|+... .+-..+ .....|. ..++.+++|.|++.|+. .|..| |+
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~i-p~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~ 114 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWI-PELGIK--------MDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMP 114 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEE-TTCTEE--------EEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-E
T ss_pred ceecccccceEeEEEEcCCccccccc-cccCcc--------cccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCe
Confidence 456678999999988752 344432 111111 0111222 45777899999999987 78776 77
Q ss_pred eeEEe
Q 018026 120 LAINV 124 (362)
Q Consensus 120 ~~I~V 124 (362)
+.|.|
T Consensus 115 ~~v~V 119 (120)
T PF00116_consen 115 GKVIV 119 (120)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77766
No 67
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=57.69 E-value=6.1 Score=26.54 Aligned_cols=18 Identities=22% Similarity=0.789 Sum_probs=11.0
Q ss_pred ccccccCCceecCCEEEE
Q 018026 216 YQNWARNNNFSVGDILVF 233 (362)
Q Consensus 216 Y~~Wa~~~~f~vGD~LvF 233 (362)
|..|..++....||.|.|
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY 18 (41)
T ss_dssp --B--TTCEE-TT-EEEE
T ss_pred CCCcCCCCEEcCCCEEEE
Confidence 567999999999999986
No 68
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=57.47 E-value=20 Score=38.58 Aligned_cols=88 Identities=18% Similarity=0.309 Sum_probs=52.8
Q ss_pred CCcCCCCCCCCCCccccCceeeeCCEEEEeecCC---CccE------EEeCccc--cCC-CCCCCCCCcCCCCCcEEEEe
Q 018026 32 GWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG---NHDV------TRVTQSS--FNA-CNTTSPLSRTTNSPASVTLT 99 (362)
Q Consensus 32 GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~---~h~V------~~V~~~~--y~~-C~~~~~i~~~~~G~~~v~l~ 99 (362)
-|++. + ..|.. ....+++.||.|++.+.+. .|.+ ++|...+ |.. .++ -.+.-..+-...|.++
T Consensus 487 ~wtiN--G-~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~~~dT-v~V~Pg~t~~~~f~ad 561 (587)
T TIGR01480 487 AWSFD--G-EAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQVRKHT-VDVPPGGKRSFRVTAD 561 (587)
T ss_pred EEEEC--C-ccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccccCCc-eeeCCCCEEEEEEECC
Confidence 38874 2 23433 2457899999999999863 2333 2332111 111 111 1111111122456778
Q ss_pred eccceEEEcCCCCCCCCCCeeeEEe
Q 018026 100 ASGPHYFICSFPGHCLGGQKLAINV 124 (362)
Q Consensus 100 ~~G~~yFic~~~~HC~~Gmk~~I~V 124 (362)
.+|..+|-|.+..|=+.||.-.|.|
T Consensus 562 ~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 562 ALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 9999999999999999999888776
No 69
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=53.40 E-value=15 Score=30.76 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=18.8
Q ss_pred cCCceecCCEEEEE-eCCCCceEEEE-cccccC
Q 018026 221 RNNNFSVGDILVFD-YPARVHDVVEV-TKAAYD 251 (362)
Q Consensus 221 ~~~~f~vGD~LvF~-y~~~~hsV~~v-~~~~y~ 251 (362)
+.++|++||.|+|+ ++.++--+++| .-..|+
T Consensus 28 kr~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~ 60 (109)
T cd06555 28 KRQQIKVGDKILFNDLDTGQQLLVKVVDIRKYD 60 (109)
T ss_pred chhcCCCCCEEEEEEcCCCcEEEEEEEEEEecC
Confidence 34689999999994 44333334444 334444
No 70
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=53.07 E-value=6.2 Score=35.65 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=12.3
Q ss_pred CceeeeCCEEEEeec
Q 018026 49 NQTFTVGDTLVFNFA 63 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~ 63 (362)
....+.||.|+|+..
T Consensus 48 ~~~~~rGDiVvf~~P 62 (176)
T PRK13838 48 DRPVAVGDLVFICPP 62 (176)
T ss_pred CCCCCCCcEEEEECC
Confidence 457899999999864
No 71
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.28 E-value=49 Score=35.41 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=54.4
Q ss_pred CceeeeCCEEEEeecCC--------CccEEEeCccccC-C-CCCCCCCCcCCCCCcEEEEe-eccceEEEcCCCCCCCCC
Q 018026 49 NQTFTVGDTLVFNFAAG--------NHDVTRVTQSSFN-A-CNTTSPLSRTTNSPASVTLT-ASGPHYFICSFPGHCLGG 117 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~--------~h~V~~V~~~~y~-~-C~~~~~i~~~~~G~~~v~l~-~~G~~yFic~~~~HC~~G 117 (362)
.+.+..||+|+.+..+. -|.|.|. +..+. - =.+.-||.-..+-..+|+++ ..|++||......|-..|
T Consensus 60 ~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G 138 (563)
T KOG1263|consen 60 TINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATG 138 (563)
T ss_pred eEEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccC
Confidence 46788999999877642 1455442 23332 1 00111343333334578887 789999999999999999
Q ss_pred CeeeEEeecCCCCC
Q 018026 118 QKLAINVSARGSSP 131 (362)
Q Consensus 118 mk~~I~V~~~~~~p 131 (362)
+..+|.|......+
T Consensus 139 ~~G~liI~~~~~~p 152 (563)
T KOG1263|consen 139 VFGALIINPRPGLP 152 (563)
T ss_pred ceeEEEEcCCccCC
Confidence 99999998765443
No 72
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=52.09 E-value=29 Score=30.73 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=18.3
Q ss_pred CceeeeCCEEEEeecCC----CccEEEeC
Q 018026 49 NQTFTVGDTLVFNFAAG----NHDVTRVT 73 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~----~h~V~~V~ 73 (362)
...++.||.++|+...+ -|.|..+.
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v~ 86 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEIN 86 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEEE
Confidence 35789999999998654 36666653
No 73
>PLN02604 oxidoreductase
Probab=51.52 E-value=20 Score=38.18 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=50.2
Q ss_pred cCCceecCCEEEEEeCCC----CceEEE--Ec--ccc-cCCC--CCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCC
Q 018026 221 RNNNFSVGDILVFDYPAR----VHDVVE--VT--KAA-YDSC--NSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSA 289 (362)
Q Consensus 221 ~~~~f~vGD~LvF~y~~~----~hsV~~--v~--~~~-y~~C--~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~ 289 (362)
.-.+++.||.|++++.+. .|+++. +. ... +|.= ....++....+=..+|.++.+|.+||-|-...|-..
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 134 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREA 134 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhC
Confidence 347889999999988543 234432 11 111 1110 001122222222346788999999999999999999
Q ss_pred CCeEEEEeeCCC
Q 018026 290 GQKLAVNVTGGS 301 (362)
Q Consensus 290 GmKl~I~V~~~~ 301 (362)
||...|.|....
T Consensus 135 Gl~G~liV~~~~ 146 (566)
T PLN02604 135 GLYGSIRVSLPR 146 (566)
T ss_pred CCeEEEEEEecC
Confidence 999999998643
No 74
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.32 E-value=1.4e+02 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=25.2
Q ss_pred EEEEeeccceEEEcCCCCCCCC---CCeeeEEeecCC
Q 018026 95 SVTLTASGPHYFICSFPGHCLG---GQKLAINVSARG 128 (362)
Q Consensus 95 ~v~l~~~G~~yFic~~~~HC~~---Gmk~~I~V~~~~ 128 (362)
.++.+++|.|+..|+. .|.. .|++.|.|.+.+
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 4566889999999987 6766 489999887643
No 75
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=48.77 E-value=94 Score=28.49 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=16.5
Q ss_pred CCcccEEEEcCCCCCCCCCCe
Q 018026 272 GTAGEHYFFCTFPGHCSAGQK 292 (362)
Q Consensus 272 ~~~G~~yFic~~~~HC~~GmK 292 (362)
+..+=.|..|.-.+||-+--.
T Consensus 71 n~s~C~W~~C~~~~~Cv~~st 91 (186)
T PF05283_consen 71 NNSTCVWMECKGESYCVNNST 91 (186)
T ss_pred ccCceEeeecCCCCcccCCcc
Confidence 456789999999999986433
No 76
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=47.07 E-value=43 Score=30.59 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=51.6
Q ss_pred EEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeecCCCccEEEeCccccCCCCCCCCCC-cCCCCC---cEEEEe
Q 018026 24 RHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLS-RTTNSP---ASVTLT 99 (362)
Q Consensus 24 ~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~~~~h~V~~V~~~~y~~C~~~~~i~-~~~~G~---~~v~l~ 99 (362)
..++|..=.|.+.-.+..+.-.=.+...+.+|+.+.|+..+ .||.- +| +-..-.++ ..--|. ..++.+
T Consensus 93 i~v~~~qw~W~f~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts--~DV~H----sf--~ip~~~~k~da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 93 VKVEGHQWYWSFDYPESRRGFTTVNELVVPAGTPVRLQVTS--KDVIH----SF--WVPELGGKIDAIPGQYNALWFNAD 164 (201)
T ss_pred EEEEEEEeEEEEEcCCcCCCccccCEEEEEcCCEEEEEEEe--Cchhh----cc--cccccCceEEecCCcEEEEEEEeC
Confidence 44567777888742110000011234568899999998875 44421 11 11111111 111222 346778
Q ss_pred eccceEEEcCCCCCCC---CCCeeeEEeec
Q 018026 100 ASGPHYFICSFPGHCL---GGQKLAINVSA 126 (362)
Q Consensus 100 ~~G~~yFic~~~~HC~---~Gmk~~I~V~~ 126 (362)
++|.|++.|+. .|. ..|++.|.|..
T Consensus 165 ~~G~y~~~c~e--~cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 165 EPGVYYGYCAE--LCGAGHSLMLFKVVVVE 192 (201)
T ss_pred CCEEEEEEehh--hCCcCccCCeEEEEEEC
Confidence 99999999998 444 46999988874
No 77
>PLN02191 L-ascorbate oxidase
Probab=46.69 E-value=25 Score=37.61 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=48.4
Q ss_pred CCceecCCEEEEEeCCCC----ceEEE----Ecccc-cCC--CCCCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCC
Q 018026 222 NNNFSVGDILVFDYPARV----HDVVE----VTKAA-YDS--CNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAG 290 (362)
Q Consensus 222 ~~~f~vGD~LvF~y~~~~----hsV~~----v~~~~-y~~--C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~G 290 (362)
.++++.||+|+.+..++. ++++- +.... +|. -...-+|....+=..+|+++..|.+||-|-...+-..|
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~G 134 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAG 134 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCC
Confidence 468899999998875431 22221 11111 111 00111233222223568889999999999998888999
Q ss_pred CeEEEEeeC
Q 018026 291 QKLAVNVTG 299 (362)
Q Consensus 291 mKl~I~V~~ 299 (362)
|...|.|..
T Consensus 135 l~G~liV~~ 143 (574)
T PLN02191 135 LYGSLIVDV 143 (574)
T ss_pred CEEEEEEcc
Confidence 999999964
No 78
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=46.25 E-value=44 Score=30.58 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=50.6
Q ss_pred eeeeeccCCcccCCCCCCCcccc------ccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCCCCcc-CCCCC---
Q 018026 197 THVVGGALGWTVPPNASVGYQNW------ARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISK-STNPP--- 266 (362)
Q Consensus 197 ~~~VG~~~GW~~~~~~~~~Y~~W------a~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~~~~~-~~~G~--- 266 (362)
..++|-.=.|.+ .|.+. .+...+.+|+.++|.-.+. ||. .+|.- ..-.++. .--|.
T Consensus 93 i~v~~~qw~W~f------~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~--DV~----Hsf~i--p~~~~k~da~PG~~~~ 158 (201)
T TIGR02866 93 VKVEGHQWYWSF------DYPESRRGFTTVNELVVPAGTPVRLQVTSK--DVI----HSFWV--PELGGKIDAIPGQYNA 158 (201)
T ss_pred EEEEEEEeEEEE------EcCCcCCCccccCEEEEEcCCEEEEEEEeC--chh----hcccc--cccCceEEecCCcEEE
Confidence 445566667875 24443 1234678999999987542 332 11110 0001111 11222
Q ss_pred ceEEcCCcccEEEEcCCCCCCCC---CCeEEEEeeC
Q 018026 267 TRITLGTAGEHYFFCTFPGHCSA---GQKLAVNVTG 299 (362)
Q Consensus 267 ~~v~l~~~G~~yFic~~~~HC~~---GmKl~I~V~~ 299 (362)
..++.+++|.|++.|++ .|.. .|++.|.|..
T Consensus 159 ~~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 159 LWFNADEPGVYYGYCAE--LCGAGHSLMLFKVVVVE 192 (201)
T ss_pred EEEEeCCCEEEEEEehh--hCCcCccCCeEEEEEEC
Confidence 34677999999999997 5544 5999998875
No 79
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=45.03 E-value=17 Score=22.48 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=9.4
Q ss_pred CchHHHHHHHHHHHHhhh
Q 018026 1 MFNRFFLAAIAIAALVQS 18 (362)
Q Consensus 1 m~~~~~l~~~~~a~l~~~ 18 (362)
|-||+++.++++..|..+
T Consensus 6 mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 346665555555544443
No 80
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=44.56 E-value=22 Score=33.93 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=53.3
Q ss_pred eeeeccCCcccCCCCCCCccccc-cCCceecCCEEEEEeCCC--CceEEEEcccccCCCCCCCCCcc--CCCCCceEEcC
Q 018026 198 HVVGGALGWTVPPNASVGYQNWA-RNNNFSVGDILVFDYPAR--VHDVVEVTKAAYDSCNSSSTISK--STNPPTRITLG 272 (362)
Q Consensus 198 ~~VG~~~GW~~~~~~~~~Y~~Wa-~~~~f~vGD~LvF~y~~~--~hsV~~v~~~~y~~C~~~~~~~~--~~~G~~~v~l~ 272 (362)
.++|-.-.|.+--. +|.-+. +...+.+|..|+|+-.+. -|+...-. ....+.. ...-...++.+
T Consensus 116 ~v~~~qw~W~f~Yp---~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~IP~--------l~~k~d~iPG~~~~~~~~~~ 184 (247)
T COG1622 116 EVTAYQWKWLFIYP---DYGIATVNELVLPVGRPVRFKLTSADVIHSFWIPQ--------LGGKIDAIPGMTTELWLTAN 184 (247)
T ss_pred EEEEEEEEEEEEcc---CcCccccceEEEeCCCeEEEEEEechhceeEEecC--------CCceeeecCCceEEEEEecC
Confidence 34455556765210 011122 446889999999999765 23332211 0000000 11112346779
Q ss_pred CcccEEEEcCCCCCCCCC---CeEEEEeeCCC
Q 018026 273 TAGEHYFFCTFPGHCSAG---QKLAVNVTGGS 301 (362)
Q Consensus 273 ~~G~~yFic~~~~HC~~G---mKl~I~V~~~~ 301 (362)
++|.|+.+|.+ .|..| |++.|.|....
T Consensus 185 ~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 185 KPGTYRGICAE--YCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred CCeEEEEEcHh--hcCCCcccceEEEEEEcHH
Confidence 99999999996 77665 99999998754
No 81
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=44.22 E-value=1.8e+02 Score=28.21 Aligned_cols=17 Identities=18% Similarity=0.042 Sum_probs=11.3
Q ss_pred EEcCCCCCCCCCCeEEE
Q 018026 279 FFCTFPGHCSAGQKLAV 295 (362)
Q Consensus 279 Fic~~~~HC~~GmKl~I 295 (362)
+.+..+..+..|+.|.+
T Consensus 255 IlVkeGD~V~vGqpL~~ 271 (274)
T PLN02983 255 ILAEDGKPVSVDTPLFV 271 (274)
T ss_pred EecCCCCEeCCCCEEEE
Confidence 44566677777877654
No 82
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.79 E-value=30 Score=31.78 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=25.9
Q ss_pred eEEcCCcccEEEEcCCCCCCCCC---CeEEEEeeCCC
Q 018026 268 RITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTGGS 301 (362)
Q Consensus 268 ~v~l~~~G~~yFic~~~~HC~~G---mKl~I~V~~~~ 301 (362)
.++.+++|.++.+|++ .|..| |++.|.|....
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 3566899999999996 78765 99999997654
No 83
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=43.68 E-value=1.7e+02 Score=30.19 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=7.7
Q ss_pred ceEEEecCCCC
Q 018026 22 QTRHVVGDALG 32 (362)
Q Consensus 22 ~~~~~VGg~~G 32 (362)
...++||+..|
T Consensus 27 ~~~~~vg~~~~ 37 (421)
T PRK09723 27 NVSYIVGNYYG 37 (421)
T ss_pred ceEEEEccccc
Confidence 46788998644
No 84
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=42.44 E-value=48 Score=35.73 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=48.8
Q ss_pred CCceecCCEEEEEeCCC--------CceEEEEcccccC-CCCCCCCCccCCCCCceEEc-CCcccEEEEcCCCCCCCCCC
Q 018026 222 NNNFSVGDILVFDYPAR--------VHDVVEVTKAAYD-SCNSSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHCSAGQ 291 (362)
Q Consensus 222 ~~~f~vGD~LvF~y~~~--------~hsV~~v~~~~y~-~C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~Gm 291 (362)
.++++.||+|+.+..++ -|-+.|....-.| .....-+|....+=..+|++ +..|.+||-+-...+-..|+
T Consensus 61 tI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl 140 (596)
T PLN00044 61 ALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGG 140 (596)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcC
Confidence 36778899998876433 1333332111112 00111133333333356788 47999999998888888899
Q ss_pred eEEEEeeCCC
Q 018026 292 KLAVNVTGGS 301 (362)
Q Consensus 292 Kl~I~V~~~~ 301 (362)
...|.|....
T Consensus 141 ~GalII~~~~ 150 (596)
T PLN00044 141 YGAITINNRD 150 (596)
T ss_pred eeEEEEcCcc
Confidence 9999997643
No 85
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=41.14 E-value=1.1e+02 Score=32.24 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=4.0
Q ss_pred EEEEeecc
Q 018026 95 SVTLTASG 102 (362)
Q Consensus 95 ~v~l~~~G 102 (362)
.+.|++..
T Consensus 280 e~~l~~~~ 287 (569)
T KOG3671|consen 280 EAQLTERD 287 (569)
T ss_pred cccccchh
Confidence 45555543
No 86
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=40.42 E-value=23 Score=33.79 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=25.5
Q ss_pred EEEEeeccceEEEcCCCCCCCC---CCeeeEEeecC
Q 018026 95 SVTLTASGPHYFICSFPGHCLG---GQKLAINVSAR 127 (362)
Q Consensus 95 ~v~l~~~G~~yFic~~~~HC~~---Gmk~~I~V~~~ 127 (362)
.++.+++|.|+.+|+. .|.. .|++.|.|...
T Consensus 180 ~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 180 WLTANKPGTYRGICAE--YCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred EEecCCCeEEEEEcHh--hcCCCcccceEEEEEEcH
Confidence 4667899999999987 6665 49999999865
No 87
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=38.88 E-value=28 Score=32.58 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=21.2
Q ss_pred ceEEcCCcccEEEEcCCCCCCCCC
Q 018026 267 TRITLGTAGEHYFFCTFPGHCSAG 290 (362)
Q Consensus 267 ~~v~l~~~G~~yFic~~~~HC~~G 290 (362)
+.|.+++-|-+-|+|+..+||++-
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhH
Confidence 568889999999999999999864
No 88
>PLN02835 oxidoreductase
Probab=38.84 E-value=58 Score=34.60 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=48.0
Q ss_pred CCceecCCEEEEEeCCC---C-----ceEEEEcccccCC-CCCCCCCccCCCCCceEEc-CCcccEEEEcCCCCCCCCCC
Q 018026 222 NNNFSVGDILVFDYPAR---V-----HDVVEVTKAAYDS-CNSSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHCSAGQ 291 (362)
Q Consensus 222 ~~~f~vGD~LvF~y~~~---~-----hsV~~v~~~~y~~-C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~Gm 291 (362)
.++++.||+|+.+..++ . |-+.+......|. ....-+|....+=..+|++ +..|.+||=|-...+-..||
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl 140 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG 140 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence 46889999998887543 1 2332222111221 0112234333333356776 57999999998888888899
Q ss_pred eEEEEeeC
Q 018026 292 KLAVNVTG 299 (362)
Q Consensus 292 Kl~I~V~~ 299 (362)
...|.|..
T Consensus 141 ~G~lIV~~ 148 (539)
T PLN02835 141 FGAINVYE 148 (539)
T ss_pred cceeEEeC
Confidence 99999964
No 89
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=38.24 E-value=57 Score=34.55 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=46.5
Q ss_pred CCceecCCEEEEEeCCC---CceEE-----EEcccccC--CCCCCCCCccCCCCCceEEc-CCcccEEEEcCCCCCCCCC
Q 018026 222 NNNFSVGDILVFDYPAR---VHDVV-----EVTKAAYD--SCNSSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHCSAG 290 (362)
Q Consensus 222 ~~~f~vGD~LvF~y~~~---~hsV~-----~v~~~~y~--~C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~G 290 (362)
.++++.||+|+.+..+. .++++ |......| .....-+|....+=..+|++ +..|.+||=|-... ...|
T Consensus 35 ~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~-~~~G 113 (539)
T TIGR03389 35 TLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISW-LRAT 113 (539)
T ss_pred EEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchh-hhcc
Confidence 47889999999887533 22332 11111112 11112233332222356777 48899999998753 4579
Q ss_pred CeEEEEeeCCC
Q 018026 291 QKLAVNVTGGS 301 (362)
Q Consensus 291 mKl~I~V~~~~ 301 (362)
|...|.|....
T Consensus 114 l~G~lIV~~~~ 124 (539)
T TIGR03389 114 VYGAIVILPKP 124 (539)
T ss_pred ceEEEEEcCCC
Confidence 99999997543
No 90
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=38.23 E-value=15 Score=25.72 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=12.2
Q ss_pred CchHHHHHHHHHHHHhhhhcc
Q 018026 1 MFNRFFLAAIAIAALVQSSTA 21 (362)
Q Consensus 1 m~~~~~l~~~~~a~l~~~~~a 21 (362)
|-|.++++++++.+++.++.+
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh
Confidence 444445555555666666755
No 91
>PLN02354 copper ion binding / oxidoreductase
Probab=38.08 E-value=69 Score=34.15 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=46.6
Q ss_pred CceecCCEEEEEeCCC--------CceEEEEcccccCC-CCCCCCCccCCCCCceEEc-CCcccEEEEcCCCCCCCCCCe
Q 018026 223 NNFSVGDILVFDYPAR--------VHDVVEVTKAAYDS-CNSSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHCSAGQK 292 (362)
Q Consensus 223 ~~f~vGD~LvF~y~~~--------~hsV~~v~~~~y~~-C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~GmK 292 (362)
++++.||+|+.+..++ -|-+.|-.....|. -...-+|....+=..+|++ +..|.+||-+-...+-..||.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~ 139 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGF 139 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCcc
Confidence 5667788887766432 13343321111221 0011134333333356777 468999999988888889999
Q ss_pred EEEEeeCC
Q 018026 293 LAVNVTGG 300 (362)
Q Consensus 293 l~I~V~~~ 300 (362)
..|.|...
T Consensus 140 G~lII~~~ 147 (552)
T PLN02354 140 GGLRVNSR 147 (552)
T ss_pred ceEEEcCC
Confidence 99999754
No 92
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=38.01 E-value=81 Score=27.69 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=27.6
Q ss_pred CceecCCEEEEEeC-----CCCceEEEEcccccCCCCCC
Q 018026 223 NNFSVGDILVFDYP-----ARVHDVVEVTKAAYDSCNSS 256 (362)
Q Consensus 223 ~~f~vGD~LvF~y~-----~~~hsV~~v~~~~y~~C~~~ 256 (362)
...+.||++++.-. ...|+.+.++...+-.|+-.
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~ 112 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYG 112 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCC
Confidence 57899999998664 34699999988888899963
No 93
>PLN02168 copper ion binding / pectinesterase
Probab=34.96 E-value=81 Score=33.62 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=49.7
Q ss_pred CCceecCCEEEEEeCCC---C-----ceEEEEcccccCC-CCCCCCCccCCCCCceEEcC-CcccEEEEcCCCCCCCCCC
Q 018026 222 NNNFSVGDILVFDYPAR---V-----HDVVEVTKAAYDS-CNSSSTISKSTNPPTRITLG-TAGEHYFFCTFPGHCSAGQ 291 (362)
Q Consensus 222 ~~~f~vGD~LvF~y~~~---~-----hsV~~v~~~~y~~-C~~~~~~~~~~~G~~~v~l~-~~G~~yFic~~~~HC~~Gm 291 (362)
.++++.||+|+.+..++ . |-+.+......|. ....-+|....+=..+|++. ..|.+||=+-...+=..||
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 47889999999988543 1 3333322211221 11122444333334568884 7999999997776667899
Q ss_pred eEEEEeeCCC
Q 018026 292 KLAVNVTGGS 301 (362)
Q Consensus 292 Kl~I~V~~~~ 301 (362)
...|.|....
T Consensus 138 ~G~lII~~~~ 147 (545)
T PLN02168 138 YGAIRIYNPE 147 (545)
T ss_pred eeEEEEcCCc
Confidence 9999997643
No 94
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=34.00 E-value=32 Score=27.02 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=12.2
Q ss_pred ccCCceecCCEEEEEeCCC
Q 018026 220 ARNNNFSVGDILVFDYPAR 238 (362)
Q Consensus 220 a~~~~f~vGD~LvF~y~~~ 238 (362)
+..+.+++||.++|.+...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 4568899999999999753
No 95
>PRK11372 lysozyme inhibitor; Provisional
Probab=33.82 E-value=1.7e+02 Score=24.38 Aligned_cols=24 Identities=4% Similarity=0.162 Sum_probs=14.7
Q ss_pred CCEEEEeecCCCccEEEe---CccccC
Q 018026 55 GDTLVFNFAAGNHDVTRV---TQSSFN 78 (362)
Q Consensus 55 GD~L~F~~~~~~h~V~~V---~~~~y~ 78 (362)
+|.+.|.|....+...++ +.+.|.
T Consensus 50 ~~~v~l~~~~~~~~L~~~~SASGArY~ 76 (109)
T PRK11372 50 RQEVSFVYDNQLLHLKQGISASGARYT 76 (109)
T ss_pred CCeEEEEECCEEEEEEEeeccCcCcEe
Confidence 778888886545555554 344554
No 96
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=33.07 E-value=88 Score=31.82 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=37.9
Q ss_pred cCCceecCCEEEEEeCCCCceEEEEcccccCCCC---CCCCCccCCCCCceEEcCCcccEEEEcCCCCCCCCCCeEEEEe
Q 018026 221 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCN---SSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 297 (362)
Q Consensus 221 ~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~---~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~GmKl~I~V 297 (362)
...++..|+ ++|.-.+..-.+.|+ +.++.-- -...+....++..+++| ++|.|-|+|+. | ..|+..|.|
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Ef--e~~~~~~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~C~~--~--~~~~g~l~V 115 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEW--EILKGVMVVEERENIAPGFSQKMTANL-QPGEYDMTCGL--L--TNPKGKLIV 115 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceE--EeeccccccccccccCCCCceEEEEec-CCceEEeecCc--C--CCCCceEEE
Confidence 668889998 455532222223221 1111000 01223333333445666 69999999976 5 446788888
Q ss_pred eCC
Q 018026 298 TGG 300 (362)
Q Consensus 298 ~~~ 300 (362)
...
T Consensus 116 tg~ 118 (375)
T PRK10378 116 KGE 118 (375)
T ss_pred eCC
Confidence 653
No 97
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=32.93 E-value=41 Score=30.67 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=17.7
Q ss_pred CCCCCCCccccCceeeeCCEEEEeecC
Q 018026 38 NGPATYSNWAANQTFTVGDTLVFNFAA 64 (362)
Q Consensus 38 ~~~~~y~~Wa~~~~f~vGD~L~F~~~~ 64 (362)
++...|+.|.... +. |.+.+.||-.
T Consensus 44 ~~~~~y~~~~~~~-l~-GKV~lvn~~A 68 (184)
T TIGR01626 44 GKDTVYQPWGSAE-LA-GKVRVVHHIA 68 (184)
T ss_pred CCcccceeccHHH-cC-CCEEEEEEEe
Confidence 3568899996554 33 8877777765
No 98
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=31.77 E-value=78 Score=29.79 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=12.2
Q ss_pred ccCceeeeCCEEEEeec
Q 018026 47 AANQTFTVGDTLVFNFA 63 (362)
Q Consensus 47 a~~~~f~vGD~L~F~~~ 63 (362)
.+.+-.+|||+|...-.
T Consensus 60 ~D~rA~~VGDiiTV~i~ 76 (221)
T PRK12407 60 QDRRAYRVGDILTVILD 76 (221)
T ss_pred ccccccCCCCEEEEEEE
Confidence 44566789999976553
No 99
>PRK10883 FtsI repressor; Provisional
Probab=30.86 E-value=2.1e+02 Score=29.85 Aligned_cols=76 Identities=11% Similarity=0.147 Sum_probs=44.1
Q ss_pred CceeeeCCEEEEeecCCC--------ccEEEeCccccCCCCCCCCCCcCCCCCcEEEEe-eccceEEEcCCCC----CCC
Q 018026 49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLT-ASGPHYFICSFPG----HCL 115 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~~--------h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~-~~G~~yFic~~~~----HC~ 115 (362)
.++++.||.|+.++.+.- |.+. |.....+.. ...|.-..+-...++++ .+|+|||-+...+ +..
T Consensus 78 tir~~~Gd~v~v~v~N~L~~~ttiHwHGl~-~~~~~~~g~--~~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~ 154 (471)
T PRK10883 78 TIRVWKGDDVKLIYSNRLTEPVSMTVSGLQ-VPGPLMGGP--ARMMSPNADWAPVLPIRQNAATCWYHANTPNRMAQHVY 154 (471)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeECCcc-CCCCCCCCc--cccCCCCCeEEEEEecCCCceeeEEccCCCCchhhhHh
Confidence 468999999999997643 3332 221111111 11222111111344444 4899999887543 556
Q ss_pred CCCeeeEEeecC
Q 018026 116 GGQKLAINVSAR 127 (362)
Q Consensus 116 ~Gmk~~I~V~~~ 127 (362)
.||...|.|...
T Consensus 155 ~GL~G~lII~d~ 166 (471)
T PRK10883 155 NGLAGMWLVEDE 166 (471)
T ss_pred cCCeEEEEEeCC
Confidence 899999988754
No 100
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=30.61 E-value=92 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=26.6
Q ss_pred ceeeeCCEEEEeec-----CCCccEEEeCccccCCCCC
Q 018026 50 QTFTVGDTLVFNFA-----AGNHDVTRVTQSSFNACNT 82 (362)
Q Consensus 50 ~~f~vGD~L~F~~~-----~~~h~V~~V~~~~y~~C~~ 82 (362)
...+.||++++.-. ...|+.+.++....-+|+-
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y 111 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNY 111 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecC
Confidence 46899999998654 2469999888888888986
No 101
>PF15240 Pro-rich: Proline-rich
Probab=29.93 E-value=27 Score=31.81 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhhhcc
Q 018026 7 LAAIAIAALVQSSTA 21 (362)
Q Consensus 7 l~~~~~a~l~~~~~a 21 (362)
||||+.|+||+.++|
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 444554566666666
No 102
>PLN03089 hypothetical protein; Provisional
Probab=29.49 E-value=2e+02 Score=29.26 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=19.5
Q ss_pred eccceEEE-cCCCCCCCCCCeeeEEeecC
Q 018026 100 ASGPHYFI-CSFPGHCLGGQKLAINVSAR 127 (362)
Q Consensus 100 ~~G~~yFi-c~~~~HC~~Gmk~~I~V~~~ 127 (362)
.+|.+|=+ -+....|.+-|++.|.|...
T Consensus 102 ~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~ 130 (373)
T PLN03089 102 TKGSYYSLTFSAARTCAQDESLNVSVPPE 130 (373)
T ss_pred cCCCEEEEEEEecCCCCCCceEEEEecCC
Confidence 46777733 34568999988877776654
No 103
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=28.74 E-value=1.8e+02 Score=25.35 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=26.5
Q ss_pred EEEEeeccceEEEcCCCCCCCCCCeeeEEeecCCC
Q 018026 95 SVTLTASGPHYFICSFPGHCLGGQKLAINVSARGS 129 (362)
Q Consensus 95 ~v~l~~~G~~yFic~~~~HC~~Gmk~~I~V~~~~~ 129 (362)
++++.. |..|.|.. ..|..||++...+...+.
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 577865 99999975 699999999999887654
No 104
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.58 E-value=1.9e+02 Score=30.87 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=8.5
Q ss_pred cCCEEEEEeCCCCc
Q 018026 227 VGDILVFDYPARVH 240 (362)
Q Consensus 227 vGD~LvF~y~~~~h 240 (362)
-||+|+..|..+.|
T Consensus 499 ~~~~l~l~~~~~~~ 512 (585)
T PRK14950 499 EKNTLTLSFKSKFH 512 (585)
T ss_pred cCCEEEEecCcHHH
Confidence 45777777765543
No 105
>PRK13335 superantigen-like protein; Reviewed
Probab=27.48 E-value=4e+02 Score=26.74 Aligned_cols=46 Identities=7% Similarity=-0.034 Sum_probs=29.3
Q ss_pred EEEEeCCCCceEEEE--cccccCCCCCCCCCccCCCCCceEEc----CCcccEEEEcCCC
Q 018026 231 LVFDYPARVHDVVEV--TKAAYDSCNSSSTISKSTNPPTRITL----GTAGEHYFFCTFP 284 (362)
Q Consensus 231 LvF~y~~~~hsV~~v--~~~~y~~C~~~~~~~~~~~G~~~v~l----~~~G~~yFic~~~ 284 (362)
|.|.++...+.|..+ +++-|..-. ..|-+.|.+ ++.|..|||-|+-
T Consensus 199 ~~f~~~~q~~~V~L~GkDk~kyk~~~--------~~glDVFvV~E~~~~~g~~ySiGGVT 250 (356)
T PRK13335 199 MNVIPNRFIYKIALVGKDEKKYKDGP--------YDNIDVFIVLEDNKYQLKKYSVGGIT 250 (356)
T ss_pred EEECcCCeEEEEEEecCcHHHhccCC--------CCCceEEEEeccCCCccceeeeccEe
Confidence 788888888888887 555665211 122333333 4568899998874
No 106
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=27.44 E-value=31 Score=27.05 Aligned_cols=49 Identities=27% Similarity=0.441 Sum_probs=22.0
Q ss_pred ceeeeCCEEEEeecC-----CCccEEEe-CccccCCCCCCCCCCcCCCCCcEEEEeeccceEEE
Q 018026 50 QTFTVGDTLVFNFAA-----GNHDVTRV-TQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFI 107 (362)
Q Consensus 50 ~~f~vGD~L~F~~~~-----~~h~V~~V-~~~~y~~C~~~~~i~~~~~G~~~v~l~~~G~~yFi 107 (362)
.-..|||.|.|.-.. |+-+|..| ++..|.-- .+....++++..|.+|=+
T Consensus 26 HGl~vGD~VnFsnsa~tGvSG~mTVatVid~ntFTVt---------~~~~q~~t~NnaG~~w~~ 80 (83)
T PF12195_consen 26 HGLFVGDFVNFSNSAVTGVSGNMTVATVIDANTFTVT---------TSNSQTSTFNNAGVNWNF 80 (83)
T ss_dssp ----TT-EEEEES-SSTT--EEEEEEEEEETTEEEEE----------S---SS-EE-TT-EEEE
T ss_pred CceeecceEEEeccccccccccEEEEEEecCCcEEEe---------cCCcccccccccceeeec
Confidence 346899999998764 45566555 44444321 222244667778887743
No 107
>PRK13042 superantigen-like protein; Reviewed
Probab=26.43 E-value=3e+02 Score=26.95 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=36.0
Q ss_pred EEEEeCCCCceEEEE--cccccCCCCCCCCCccCCCCCceEEc----CCcccEEEEcCCCCCCCC--CCeEEEEeeC
Q 018026 231 LVFDYPARVHDVVEV--TKAAYDSCNSSSTISKSTNPPTRITL----GTAGEHYFFCTFPGHCSA--GQKLAVNVTG 299 (362)
Q Consensus 231 LvF~y~~~~hsV~~v--~~~~y~~C~~~~~~~~~~~G~~~v~l----~~~G~~yFic~~~~HC~~--GmKl~I~V~~ 299 (362)
|.|.++...+.|..+ +++-|..-. ..|-+.|-+ ++.|..|+|-|+-.|=.+ ..+..|+|.-
T Consensus 134 ~~f~~~~q~~~v~L~GkDk~kyk~~~--------~~~lDVF~V~E~~~~~~~~~syGGVTk~N~n~~Dk~~~vnl~i 202 (291)
T PRK13042 134 MNVVPDYFIYKIALVGKDDKKYGEGV--------HRNVDVFVVLEENKYNLEKYSVGGITKSNSKKVDHKAGVRITK 202 (291)
T ss_pred EEECcCCeEEEEEEecCcHHHhccCC--------CCCceEEEEeccCCCcCceEEECCEEcCCCCcccccccceEEE
Confidence 788888888888887 555665211 122333333 345788888888666433 3444455543
No 108
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=26.12 E-value=4.5e+02 Score=25.52 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=10.1
Q ss_pred CCEEEEeecCCCccE
Q 018026 55 GDTLVFNFAAGNHDV 69 (362)
Q Consensus 55 GD~L~F~~~~~~h~V 69 (362)
.|.|.|.|+...+++
T Consensus 3 ~~~~~~~~~~s~~~~ 17 (306)
T PF01299_consen 3 VDEITFSYNTSDTTT 17 (306)
T ss_pred cceEEEeccCCCCcc
Confidence 367788887655555
No 109
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=25.57 E-value=91 Score=27.98 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=23.1
Q ss_pred eEEcCCcccEEEEcCCCCCCCC---CCeEEEEeeC
Q 018026 268 RITLGTAGEHYFFCTFPGHCSA---GQKLAVNVTG 299 (362)
Q Consensus 268 ~v~l~~~G~~yFic~~~~HC~~---GmKl~I~V~~ 299 (362)
.+..+++|.+|..|+. .|.. .|.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 3566899999999996 6654 4888888754
No 110
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=24.64 E-value=50 Score=25.04 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=14.5
Q ss_pred ccCCceecCCEEEEEeCCCCce
Q 018026 220 ARNNNFSVGDILVFDYPARVHD 241 (362)
Q Consensus 220 a~~~~f~vGD~LvF~y~~~~hs 241 (362)
+.-..+++||.|.|.+......
T Consensus 38 ~~l~~l~~Gd~V~F~~~~~~~~ 59 (70)
T PF11604_consen 38 VDLAGLKPGDKVRFTFERTDDG 59 (70)
T ss_dssp SEESS-STT-EEEEEEEEETTC
T ss_pred hhhhcCCCCCEEEEEEEECCCC
Confidence 3447899999999999754333
No 111
>PRK09810 entericidin A; Provisional
Probab=24.42 E-value=76 Score=21.93 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=9.3
Q ss_pred CchHHHHHHHHHHHHhhhh
Q 018026 1 MFNRFFLAAIAIAALVQSS 19 (362)
Q Consensus 1 m~~~~~l~~~~~a~l~~~~ 19 (362)
|-||++++++++++++.++
T Consensus 1 mMkk~~~l~~~~~~~L~aC 19 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGC 19 (41)
T ss_pred ChHHHHHHHHHHHHHHhhh
Confidence 5666655554433334333
No 112
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.10 E-value=93 Score=29.13 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=24.8
Q ss_pred eEEcCCcccEEEEcCCCCCCCCC---CeEEEEeeC
Q 018026 268 RITLGTAGEHYFFCTFPGHCSAG---QKLAVNVTG 299 (362)
Q Consensus 268 ~v~l~~~G~~yFic~~~~HC~~G---mKl~I~V~~ 299 (362)
.++.+++|.+|.+|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEEC
Confidence 4567899999999996 78776 999888865
No 113
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=23.91 E-value=1.4e+02 Score=25.93 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHHHhhhhccc-------------eEEEecCCCCCcCCCCCCCCCCccccCceeeeCCEEEEeec
Q 018026 1 MFNRFFLAAIAIAALVQSSTAQ-------------TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFA 63 (362)
Q Consensus 1 m~~~~~l~~~~~a~l~~~~~a~-------------~~~~VGg~~GW~~~~~~~~~y~~Wa~~~~f~vGD~L~F~~~ 63 (362)
|.|+.+..+|++++||.+|... .+|.-=|+.||.-. -.++|+-|-++.-+|+
T Consensus 1 mvk~g~~~~~~~~~LL~aCg~sd~s~~t~~dGtY~~~y~~fDd~gwk~f-----------~~iti~dGKiv~~~yd 65 (147)
T COG4939 1 MVKYGLVGMIVALSLLTACGKSDFSKMTFNDGTYQGHYESFDDHGWKAF-----------VTITIQDGKIVACTYD 65 (147)
T ss_pred CceehhhHHHHHHHHHHHhcccccccccccCCceeeeeccccccCccce-----------EEEEEeCCEEEEEEee
Confidence 6777776667766666655321 12223345566532 3456777777655554
No 114
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=23.75 E-value=99 Score=32.85 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=43.7
Q ss_pred ccCCceecCCEEEEEeCCCCceEEEEcccccCCCCCCC----CCcc-CCCC-CceEEcCCcccEEEEc
Q 018026 220 ARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS----TISK-STNP-PTRITLGTAGEHYFFC 281 (362)
Q Consensus 220 a~~~~f~vGD~LvF~y~~~~hsV~~v~~~~y~~C~~~~----~~~~-~~~G-~~~v~l~~~G~~yFic 281 (362)
..+++|..-|.++|+|++....++.+.+.+.|.-+.+- .+-. ..+| ...|.|.+.|+.|=+|
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 36799999999999999888888888888888655432 1111 1123 3468888888877553
No 115
>PRK11627 hypothetical protein; Provisional
Probab=23.44 E-value=84 Score=28.86 Aligned_cols=21 Identities=19% Similarity=0.418 Sum_probs=14.1
Q ss_pred CchHHHHHHHHHHHHhhhhcc
Q 018026 1 MFNRFFLAAIAIAALVQSSTA 21 (362)
Q Consensus 1 m~~~~~l~~~~~a~l~~~~~a 21 (362)
|.||++|.++++++|..|+..
T Consensus 1 mlkklll~l~a~~~L~gCA~~ 21 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCATP 21 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcCC
Confidence 889988777766555555543
No 116
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=23.27 E-value=1.2e+02 Score=29.62 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=10.6
Q ss_pred CchHHHHHHHHHHHHh
Q 018026 1 MFNRFFLAAIAIAALV 16 (362)
Q Consensus 1 m~~~~~l~~~~~a~l~ 16 (362)
|.||+++.++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (292)
T PRK13861 1 MIKKLFLTLACLLFAA 16 (292)
T ss_pred ChhHHHHHHHHHHHhc
Confidence 8899876666654433
No 117
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=23.00 E-value=1.6e+02 Score=25.75 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=7.5
Q ss_pred eeeeCCEEEEeec
Q 018026 51 TFTVGDTLVFNFA 63 (362)
Q Consensus 51 ~f~vGD~L~F~~~ 63 (362)
..+.||.++|+..
T Consensus 51 ~~~rGDiVvf~~~ 63 (163)
T TIGR02227 51 DPKRGDIVVFKDP 63 (163)
T ss_pred CCCCCcEEEEecC
Confidence 4556666666543
No 118
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=22.76 E-value=59 Score=27.84 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=15.5
Q ss_pred CceecCCEEEEEeCCCCc
Q 018026 223 NNFSVGDILVFDYPARVH 240 (362)
Q Consensus 223 ~~f~vGD~LvF~y~~~~h 240 (362)
.+|++||.+.|-++...|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 479999999999987655
No 119
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=22.46 E-value=62 Score=21.54 Aligned_cols=18 Identities=28% Similarity=0.733 Sum_probs=13.9
Q ss_pred CCccccCceeeeCCEEEE
Q 018026 43 YSNWAANQTFTVGDTLVF 60 (362)
Q Consensus 43 y~~Wa~~~~f~vGD~L~F 60 (362)
|..|..++.-..||+|.|
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 456878877788998876
No 120
>PRK11528 hypothetical protein; Provisional
Probab=22.27 E-value=1.1e+02 Score=29.42 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCcCCCCCCCCCCccccCceeeeC--------CEEEEeecCCCccEEEe
Q 018026 32 GWIVPPNGPATYSNWAANQTFTVG--------DTLVFNFAAGNHDVTRV 72 (362)
Q Consensus 32 GW~~~~~~~~~y~~Wa~~~~f~vG--------D~L~F~~~~~~h~V~~V 72 (362)
+|.- -..+|-.|.+..+.+-+ +.|+|++-. .++..++
T Consensus 27 ~w~d---is~~yl~W~~~~e~~~~~~~~~~d~~ylelE~g~-~~~wGDl 71 (254)
T PRK11528 27 GFAN---ISLNYLDWTSRTTEKSSDKSHKDDFGYLELEGGA-GFSWGEL 71 (254)
T ss_pred cccc---eeehhhhhhccccccccccCCcCCCcEEEEEccc-cCCeEeE
Confidence 5653 24678888887655332 278888864 6666543
No 121
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=21.59 E-value=83 Score=29.48 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.2
Q ss_pred cEEEEeeccceEEEcCCCCCCCCCC
Q 018026 94 ASVTLTASGPHYFICSFPGHCLGGQ 118 (362)
Q Consensus 94 ~~v~l~~~G~~yFic~~~~HC~~Gm 118 (362)
+.+.+++.|-+-|+|+.-+||++-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 6789999999999999999998754
No 122
>PRK10965 multicopper oxidase; Provisional
Probab=20.83 E-value=1.8e+02 Score=30.84 Aligned_cols=76 Identities=7% Similarity=0.069 Sum_probs=46.3
Q ss_pred CceeeeCCEEEEeecCCC--------ccEEEeCccccCCCCCCCCCCcCCCCCcEEEEee-ccceEEEcCC----CCCCC
Q 018026 49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTA-SGPHYFICSF----PGHCL 115 (362)
Q Consensus 49 ~~~f~vGD~L~F~~~~~~--------h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~l~~-~G~~yFic~~----~~HC~ 115 (362)
.++++.||.|+.++.+.. |.+.+-. ..| .....+|.-..+-...|+++. .|++||-+.. ..+=.
T Consensus 78 tIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~D-G~pq~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~ 154 (523)
T PRK10965 78 AVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVD-GGPQGIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVA 154 (523)
T ss_pred eEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccC-CCCCCCCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHh
Confidence 468899999999997642 3332211 122 111122322222234677765 6999999886 45556
Q ss_pred CCCeeeEEeecC
Q 018026 116 GGQKLAINVSAR 127 (362)
Q Consensus 116 ~Gmk~~I~V~~~ 127 (362)
.|+...+.|...
T Consensus 155 ~GL~G~lIV~d~ 166 (523)
T PRK10965 155 MGLAGLVLIEDD 166 (523)
T ss_pred CcCeEEEEEcCc
Confidence 799999999764
No 123
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=20.74 E-value=64 Score=27.66 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=15.5
Q ss_pred ceeeeCCEEEEeecCCCc
Q 018026 50 QTFTVGDTLVFNFAAGNH 67 (362)
Q Consensus 50 ~~f~vGD~L~F~~~~~~h 67 (362)
+.|++||.+.|-++...|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 479999999999998655
No 124
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=20.17 E-value=1.8e+02 Score=18.55 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.4
Q ss_pred EEEEeeccceEEEcCCCCCCCCCCe
Q 018026 95 SVTLTASGPHYFICSFPGHCLGGQK 119 (362)
Q Consensus 95 ~v~l~~~G~~yFic~~~~HC~~Gmk 119 (362)
..-++..|..||=+++...|..|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4567888999999999999999974
No 125
>PLN02991 oxidoreductase
Probab=20.01 E-value=2.2e+02 Score=30.33 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=47.5
Q ss_pred CCceecCCEEEEEeCCCC--------ceEEEEcccccCCC-CCCCCCccCCCCCceEEc-CCcccEEEEcCCCCCCCCCC
Q 018026 222 NNNFSVGDILVFDYPARV--------HDVVEVTKAAYDSC-NSSSTISKSTNPPTRITL-GTAGEHYFFCTFPGHCSAGQ 291 (362)
Q Consensus 222 ~~~f~vGD~LvF~y~~~~--------hsV~~v~~~~y~~C-~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~HC~~Gm 291 (362)
.++++.||.|+.+..++- |-+.|......|.= ...-+|....+=..+|++ +..|.+||-+-...+-..|+
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 139 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGG 139 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCC
Confidence 468889999988875431 33332211112210 011234333333356787 57999999998777767789
Q ss_pred eEEEEeeCC
Q 018026 292 KLAVNVTGG 300 (362)
Q Consensus 292 Kl~I~V~~~ 300 (362)
...|.|...
T Consensus 140 ~G~lIV~~~ 148 (543)
T PLN02991 140 FGAIRISSR 148 (543)
T ss_pred eeeEEEeCC
Confidence 888988754
Done!