Query 018027
Match_columns 362
No_of_seqs 108 out of 130
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05637 Glyco_transf_34: gala 37.4 37 0.00081 32.4 3.6 38 132-170 58-95 (239)
2 PF04244 DPRP: Deoxyribodipyri 36.6 37 0.0008 32.4 3.4 56 295-355 159-217 (224)
3 PF03935 SKN1: Beta-glucan syn 25.2 96 0.0021 33.4 4.4 79 9-87 45-152 (504)
4 PF01501 Glyco_transf_8: Glyco 22.9 67 0.0015 28.7 2.5 34 150-183 97-133 (250)
5 cd06437 CESA_CaSu_A2 Cellulose 22.5 78 0.0017 28.4 2.8 27 137-165 75-101 (232)
6 cd04191 Glucan_BSP_ModH Glucan 20.9 89 0.0019 29.9 3.0 29 137-165 81-109 (254)
7 PRK05454 glucosyltransferase M 19.2 92 0.002 34.6 3.0 29 137-165 206-234 (691)
8 PF07172 GRP: Glycine rich pro 19.1 1E+02 0.0022 25.9 2.6 14 10-23 4-17 (95)
9 cd06434 GT2_HAS Hyaluronan syn 18.2 1.3E+02 0.0029 26.6 3.3 27 137-165 65-91 (235)
10 PRK11498 bcsA cellulose syntha 17.4 97 0.0021 35.4 2.7 27 137-165 327-353 (852)
No 1
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=37.36 E-value=37 Score=32.39 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=24.2
Q ss_pred CcccCchhHHHHHHHhcCCCccEEEEecCCeeeecCCCC
Q 018027 132 YIVLNRPWAFVQWLEKATIEEEYILMAEPDHIFVKPLPN 170 (362)
Q Consensus 132 Y~v~NKP~A~~qWL~~a~i~e~~VlmlDpD~I~~rPl~~ 170 (362)
...-.|+.++++-|++-. +.+||+-+|+|-||+.|=..
T Consensus 58 ~~~W~K~~~lr~~m~~~P-~~~wv~~lD~Dali~n~~~~ 95 (239)
T PF05637_consen 58 PGSWAKIPALRAAMKKYP-EAEWVWWLDSDALIMNPDFS 95 (239)
T ss_dssp HHHHTHHHHHHHHHHH-T-T-SEEEEE-TTEEE------
T ss_pred ChhhHHHHHHHHHHHhCC-CCCEEEEEcCCeEEEecccc
Confidence 445778999999887533 67999999999999986544
No 2
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=36.58 E-value=37 Score=32.44 Aligned_cols=56 Identities=27% Similarity=0.668 Sum_probs=23.9
Q ss_pred ccccccCCccccCccceeeecccCCCCCCCCCCCCCCCCC-C-chHHH-HHHHHHHHHhhcCCC
Q 018027 295 GCDYNLKGELTYGKIGEWRFDKRSFLNGPPPKNLSLPPPG-V-PESVV-RLVKMVNEATANIPG 355 (362)
Q Consensus 295 G~~y~~~g~~~~gkig~W~FDKr~~~~~~~p~~l~~PP~~-~-~~~~~-~lv~~~nea~~~lp~ 355 (362)
|...+.+|+-. | |.|+||.-.- +++|++.+.|+|. . +.+.+ ..++.|++.-.+-|.
T Consensus 159 ~ILmd~~g~P~-G--GkWnfD~eNR--k~~p~~~~~P~~~~~~~d~it~~v~~~V~~~f~~~~G 217 (224)
T PF04244_consen 159 GILMDEDGKPV-G--GKWNFDAENR--KKLPKGIPIPEPPRFEPDAITQEVIELVEKHFPDHPG 217 (224)
T ss_dssp TTTE-ETTEEG-G--GSS--GGGS---------TTS---------HHHHHHHHHHHHH-TTSSS
T ss_pred CccccCCCCcC-C--CcCCCChhhc--cCCCCCCCCCCCCCCCCChHHHHHHHHHHHHCCCCCC
Confidence 45555566543 2 5699998653 3344555554443 3 33444 588899887766653
No 3
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=25.17 E-value=96 Score=33.45 Aligned_cols=79 Identities=19% Similarity=0.439 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHHHHHHHhhheeeecCcccc---------ccCC-----------CCcccccCccCCCCCCCCeeEEEEe
Q 018027 9 VSSFLLVLLALGFFFATYNLLTMVIQNKAAD---------EIGK-----------LNPLTQMPEKTGGGNSGMRFHVALT 68 (362)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~H~vfS 68 (362)
...|++|+++|.++|+.|=+|+......... .+++ .||=+.--..++....++.++.|||
T Consensus 45 lg~LilL~lGLL~LFigyPIlt~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~liDpdTP~~a~t~~~~~g~~~~LvfS 124 (504)
T PF03935_consen 45 LGGLILLILGLLMLFIGYPILTFFGKTNHSTSGGNLGGINASGQYPLLSNIRTGLIDPDTPESAYTRTSSDGRTYKLVFS 124 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhheeEEecccccccccccccccccccCcccccccccccCCCCCHHHhheeCCCCCEeeEEEe
Confidence 3445556666778899999998875433211 1111 3332211111112225788999998
Q ss_pred cCCC----Cc-----cchhhhhhhHHHH
Q 018027 69 ATDA----IY-----SQWQSRIMYYWYK 87 (362)
Q Consensus 69 t~cs----~Y-----~~WQsrimy~s~k 87 (362)
-+=+ .+ +-|++.=++|+.-
T Consensus 125 DEFn~~gRtF~~gdDp~w~a~~~~y~~t 152 (504)
T PF03935_consen 125 DEFNTDGRTFYPGDDPFWTAVDLHYWAT 152 (504)
T ss_pred hhhCCCCCccCCCCccceecccccccCC
Confidence 5432 22 5677777776654
No 4
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=22.94 E-value=67 Score=28.69 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=21.7
Q ss_pred CCccEEEEecCCeeeecCCCCC---CCCCCccccccc
Q 018027 150 IEEEYILMAEPDHIFVKPLPNL---AQGNHPAGFPFF 183 (362)
Q Consensus 150 i~e~~VlmlDpD~I~~rPl~~~---~~~g~p~a~~f~ 183 (362)
.+.+-||.+|+|+|+++++..+ ..+|.+++..-.
T Consensus 97 ~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~ 133 (250)
T PF01501_consen 97 PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVED 133 (250)
T ss_dssp TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE-
T ss_pred hhcCeEEEEcCCeeeecChhhhhcccchhhhcccccc
Confidence 4569999999999999998742 334666555433
No 5
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=22.50 E-value=78 Score=28.37 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=22.1
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 018027 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (362)
Q Consensus 137 KP~A~~qWL~~a~i~e~~VlmlDpD~I~~ 165 (362)
|+.|+..-++.+ +.+||+++|+|.++-
T Consensus 75 k~~a~n~g~~~a--~~~~i~~~DaD~~~~ 101 (232)
T cd06437 75 KAGALAEGMKVA--KGEYVAIFDADFVPP 101 (232)
T ss_pred chHHHHHHHHhC--CCCEEEEEcCCCCCC
Confidence 667777777776 679999999999863
No 6
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=20.85 E-value=89 Score=29.87 Aligned_cols=29 Identities=7% Similarity=0.268 Sum_probs=22.8
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 018027 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (362)
Q Consensus 137 KP~A~~qWL~~a~i~e~~VlmlDpD~I~~ 165 (362)
|-.++...+++..-+.+||+++|+|.+.-
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~ 109 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMS 109 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCC
Confidence 56677777776556779999999999874
No 7
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=19.19 E-value=92 Score=34.61 Aligned_cols=29 Identities=7% Similarity=0.233 Sum_probs=25.5
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 018027 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (362)
Q Consensus 137 KP~A~~qWL~~a~i~e~~VlmlDpD~I~~ 165 (362)
|-+.+.+|++...-+.|||+++|+|.++-
T Consensus 206 KaGNl~~~~~~~~~~~eyivvLDADs~m~ 234 (691)
T PRK05454 206 KAGNIADFCRRWGGAYDYMVVLDADSLMS 234 (691)
T ss_pred cHHHHHHHHHhcCCCcCEEEEEcCCCCCC
Confidence 67889999998777889999999999874
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=19.06 E-value=1e+02 Score=25.88 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHH
Q 018027 10 SSFLLVLLALGFFF 23 (362)
Q Consensus 10 ~~~~~~~~~~~~~~ 23 (362)
+.|+||.|.|++++
T Consensus 4 K~~llL~l~LA~lL 17 (95)
T PF07172_consen 4 KAFLLLGLLLAALL 17 (95)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444433
No 9
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=18.18 E-value=1.3e+02 Score=26.56 Aligned_cols=27 Identities=7% Similarity=0.335 Sum_probs=22.2
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 018027 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (362)
Q Consensus 137 KP~A~~qWL~~a~i~e~~VlmlDpD~I~~ 165 (362)
|..|+..-++.+ +.+||+++|+|-++-
T Consensus 65 ~~~a~n~g~~~a--~~d~v~~lD~D~~~~ 91 (235)
T cd06434 65 KRRALAEGIRHV--TTDIVVLLDSDTVWP 91 (235)
T ss_pred hHHHHHHHHHHh--CCCEEEEECCCceeC
Confidence 567777777776 789999999999884
No 10
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=17.39 E-value=97 Score=35.41 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.1
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 018027 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (362)
Q Consensus 137 KP~A~~qWL~~a~i~e~~VlmlDpD~I~~ 165 (362)
|.+++.+.|+++ +.|||+++|+|++.-
T Consensus 327 KAGnLN~aL~~a--~GEyIavlDAD~ip~ 353 (852)
T PRK11498 327 KAGNINNALKYA--KGEFVAIFDCDHVPT 353 (852)
T ss_pred hHHHHHHHHHhC--CCCEEEEECCCCCCC
Confidence 678888999886 679999999999953
Done!