Query 018027
Match_columns 362
No_of_seqs 108 out of 130
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rrp_B Nuclear pore complex pr 14.4 69 0.0024 26.7 1.7 39 44-82 2-46 (134)
2 3zxs_A Cryptochrome B, rscryb; 14.3 2.1E+02 0.0072 29.5 5.6 79 265-349 131-224 (522)
3 3ffy_A Putative tetrapyrrole ( 13.7 1.2E+02 0.0042 24.3 3.0 28 133-160 85-112 (115)
4 2l9a_X LAK160-P12; cationic, p 12.7 41 0.0014 21.0 -0.1 18 223-240 6-23 (26)
5 1r4g_A RNA polymerase alpha su 11.5 1.1E+02 0.0039 22.2 1.9 19 336-354 34-52 (53)
6 2lk9_A Bone marrow stromal ant 10.3 1E+02 0.0036 20.8 1.2 22 7-28 8-29 (35)
7 3ulb_A Target of rapamycin com 9.5 1.7E+02 0.0059 24.7 2.6 39 151-189 27-68 (121)
8 1ll2_A Glycogenin-1; protein-s 8.4 1.8E+02 0.0063 27.4 2.7 104 61-171 3-114 (333)
9 2bog_X Endoglucanase E-2; hydr 8.4 3.8E+02 0.013 25.5 4.8 49 114-163 65-119 (286)
10 2ium_A Avian adenovirus CELO l 8.0 1.5E+02 0.005 27.5 1.7 23 99-123 38-60 (248)
No 1
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=14.37 E-value=69 Score=26.72 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCcccccCccCCCCCCCCeeEEEEecCCCCcc------chhhhhh
Q 018027 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS------QWQSRIM 82 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~H~vfSt~cs~Y~------~WQsrim 82 (362)
+.||+++|.+..-.+....=.++|+.-|..|. .|.-|+.
T Consensus 2 ~~pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~ 46 (134)
T 1rrp_B 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGI 46 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEE
T ss_pred cccceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcE
Confidence 57999999877766667777899999998775 4776664
No 2
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=14.28 E-value=2.1e+02 Score=29.46 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=38.5
Q ss_pred CCcccccccc-ccCCCCCCC----CCCceEEEeecc-------cccccCCccccCccceeeecccCCCCCCCCCCCCCCC
Q 018027 265 GVRHILRKDF-MLQPPWDPE----VGKRFILHYTYG-------CDYNLKGELTYGKIGEWRFDKRSFLNGPPPKNLSLPP 332 (362)
Q Consensus 265 gV~H~l~~~l-miqPp~d~~----~g~~~ilHYtyG-------~~y~~~g~~~~gkig~W~FDKr~~~~~~~p~~l~~PP 332 (362)
||+-.+..+- -+.+|.+.. .|+++.+-+=|- ... .+|+-. -|.|.||+-.-. ++|+.++.|+
T Consensus 131 gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~me~FYR~~Rkr~~iLm-~~~~P~---GG~WnfD~~NRk--~~p~~~~~p~ 204 (522)
T 3zxs_A 131 PLPVRFLPDDRFLCPADEFARWTEGRKQLRMEWFYREMRRRTGLLM-EGDEPA---GGKWNFDTENRK--PAAPDLLRPR 204 (522)
T ss_dssp SSCEEEECCCCSSSCHHHHHHHHTTCSSCCHHHHHHHHHHHHTTTE-ETTEEG---GGSSCCGGGSCC--CCCCCTTCCC
T ss_pred CCcEEEeCCCCcccCHHHHHHhhcCCCCeEeeHHHHHHHHHhCcCC-CCCCCC---CCccCccccccc--cCCCCCCCCC
Confidence 8887666543 456655543 356666622111 011 122221 267999975433 3344444443
Q ss_pred C--CCchHHH-HHHHHHHHH
Q 018027 333 P--GVPESVV-RLVKMVNEA 349 (362)
Q Consensus 333 ~--~~~~~~~-~lv~~~nea 349 (362)
| ..+.+.+ ..++.|.+.
T Consensus 205 ~~~~~~d~~~~~v~~~v~~~ 224 (522)
T 3zxs_A 205 PLRFEPDAEVRAVLDLVEAR 224 (522)
T ss_dssp CCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHh
Confidence 3 2344444 366666544
No 3
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=13.74 E-value=1.2e+02 Score=24.29 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=23.0
Q ss_pred cccCchhHHHHHHHhcCCCccEEEEecC
Q 018027 133 IVLNRPWAFVQWLEKATIEEEYILMAEP 160 (362)
Q Consensus 133 ~v~NKP~A~~qWL~~a~i~e~~VlmlDp 160 (362)
...-.-.-+.+|++...++.++||++++
T Consensus 85 ~~rgtl~el~~~~~~~~~kGe~vivv~~ 112 (115)
T 3ffy_A 85 TVRGTLSELIEHFTATDPRGEIVIVLAG 112 (115)
T ss_dssp EEEEEHHHHHHHHHHSCCCSSEEEEECC
T ss_pred EEEeeHHHHHHHHHhcCCCCCEEEEEeC
Confidence 4445567789999988999999999985
No 4
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=12.72 E-value=41 Score=21.01 Aligned_cols=18 Identities=28% Similarity=0.780 Sum_probs=14.2
Q ss_pred HHHHhhHHHHHhhhhhcc
Q 018027 223 LLEEISPTWLNVSLRMKD 240 (362)
Q Consensus 223 DL~~iAP~W~~~t~~vr~ 240 (362)
-|.++||.|-.++.+.+.
T Consensus 6 alaklaplwkalalklkk 23 (26)
T 2l9a_X 6 ALAKLAPLWKALALKLKK 23 (26)
T ss_dssp TSSSSCTHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHh
Confidence 356899999998887664
No 5
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=11.46 E-value=1.1e+02 Score=22.20 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.7
Q ss_pred chHHHHHHHHHHHHhhcCC
Q 018027 336 PESVVRLVKMVNEATANIP 354 (362)
Q Consensus 336 ~~~~~~lv~~~nea~~~lp 354 (362)
.|+|-.+.+|+||-+..|-
T Consensus 34 dqEV~~~Memf~EDi~slt 52 (53)
T 1r4g_A 34 DQEVKAVMELVEEDIESLT 52 (53)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 5678889999999988763
No 6
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=10.33 E-value=1e+02 Score=20.76 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=14.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhh
Q 018027 7 LGVSSFLLVLLALGFFFATYNL 28 (362)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (362)
|-+-..+|++++||+.++.|-.
T Consensus 8 g~Gvl~LLviV~LgV~LI~f~~ 29 (35)
T 2lk9_A 8 GIGILVLLIIVILGVPLIIFTI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHhcchheEEee
Confidence 4455567777788888887743
No 7
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=9.49 E-value=1.7e+02 Score=24.70 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=29.6
Q ss_pred CccEEEEecCCeeeecCCCC---CCCCCCcccccccccccCc
Q 018027 151 EEEYILMAEPDHIFVKPLPN---LAQGNHPAGFPFFYIKPAE 189 (362)
Q Consensus 151 ~e~~VlmlDpD~I~~rPl~~---~~~~g~p~a~~f~Yi~p~~ 189 (362)
+.|=+|.||.|+|-+-|-.. +-..|...++.|.=|++|+
T Consensus 27 ~~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K 68 (121)
T 3ulb_A 27 KHERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVK 68 (121)
T ss_dssp EEEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEE
T ss_pred cccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEE
Confidence 35778999999999999854 2346788888898888875
No 8
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=8.44 E-value=1.8e+02 Score=27.44 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=50.8
Q ss_pred CeeEEEEecCCCCccchhhhhhhHHHHhhhcCCCCCCCCceEEecCCCCCC----ccCCCCce-EeCCCCCCCCCCCccc
Q 018027 61 MRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADN----LMDEIPSF-VVDPLPEGLDRGYIVL 135 (362)
Q Consensus 61 ~~~H~vfSt~cs~Y~~WQsrimy~s~kk~~~~~ggq~G~fTRILh~g~~D~----LmdeiPTf-vv~pl~~~~dd~Y~v~ 135 (362)
+..++++++|. .|- =++.++.+|.++.. +. -.+.=|.+.+-+++ |...-.++ .++++..........+
T Consensus 3 ~~a~vt~~~d~-~Yl-~~a~vl~~SL~~~~----s~-~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~ 75 (333)
T 1ll2_A 3 DQAFVTLTTND-AYA-KGALVLGSSLKQHR----TS-RRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLM 75 (333)
T ss_dssp SEEEEEEESSH-HHH-HHHHHHHHHHHHTT----CC-SEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHH
T ss_pred ceEEEEEEeCH-HHH-HHHHHHHHHHHHhC----CC-CCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccc
Confidence 35667776654 444 37888888888764 11 12221332221222 21111222 2344433211111112
Q ss_pred CchhHHHHHHHhc--C-CCccEEEEecCCeeeecCCCCC
Q 018027 136 NRPWAFVQWLEKA--T-IEEEYILMAEPDHIFVKPLPNL 171 (362)
Q Consensus 136 NKP~A~~qWL~~a--~-i~e~~VlmlDpD~I~~rPl~~~ 171 (362)
+||.--.-|.+-. + .+-+-||-||+|+|+++++..+
T Consensus 76 ~~~~~~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eL 114 (333)
T 1ll2_A 76 KRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDL 114 (333)
T ss_dssp HCGGGHHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGG
T ss_pred cccchHHHHHHHHHhHhcCCCeEEEEeCCEEeccCHHHH
Confidence 3443222232221 2 3558999999999999998653
No 9
>2bog_X Endoglucanase E-2; hydrolase, thermobifida fusca, TIM A/B fold, glycoside hydrolase family 6; HET: MGL SGC BGC; 1.04A {Thermomonospora fusca} PDB: 2bof_X* 2boe_X* 2bod_X* 1tml_A* 3ru8_X 3rpt_X
Probab=8.40 E-value=3.8e+02 Score=25.49 Aligned_cols=49 Identities=22% Similarity=0.393 Sum_probs=32.7
Q ss_pred CCCCceEeCCCCCC-CCCCCcc--cCchhHHHHHHHhc--CC-CccEEEEecCCee
Q 018027 114 DEIPSFVVDPLPEG-LDRGYIV--LNRPWAFVQWLEKA--TI-EEEYILMAEPDHI 163 (362)
Q Consensus 114 deiPTfvv~pl~~~-~dd~Y~v--~NKP~A~~qWL~~a--~i-~e~~VlmlDpD~I 163 (362)
+.+|.+|+--+|.+ | -.|+. ..-...-+.|++.- .+ +...|++||||=|
T Consensus 65 ~~~pvlVvY~lP~RDC-a~aS~Gg~~~~~~Yk~~Id~ia~~i~~~~~vvIlEPDsL 119 (286)
T 2bog_X 65 GKIPILVVSNAPGRDC-GNHSSGGAPSHSAYRSWIDEFAAGLKNRPAYIIVEPDLI 119 (286)
T ss_dssp TCBCEEEECCCSCSCC-C------CSSHHHHHHHHHHHHHTTTTCCCEEEECTTHH
T ss_pred CCceEEEEeCCCCCCc-ccccCCCCCCHHHHHHHHHHHHHHhCCCceEEEECcCch
Confidence 45899999888864 4 23432 23366778899982 34 3579999999987
No 10
>2ium_A Avian adenovirus CELO long fibre; receptor-binding, trimeric proteins, viral fibres, beta-sandwich, fiber protein, viral protein; 1.6A {Avian adenovirus GAL1} PDB: 2iun_A
Probab=7.98 E-value=1.5e+02 Score=27.53 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=15.6
Q ss_pred CceEEecCCCCCCccCCCCceEeCC
Q 018027 99 KFTRILHSGKADNLMDEIPSFVVDP 123 (362)
Q Consensus 99 ~fTRILh~g~~D~LmdeiPTfvv~p 123 (362)
+.|||.||| |.|.|.-.-|-..|
T Consensus 38 p~~~~~~~g--~nl~~sy~ifas~p 60 (248)
T 2ium_A 38 PEVATYHCG--DNLLESYDIFASLP 60 (248)
T ss_dssp CCEEEEEEE--CTTCCCCCEEEEET
T ss_pred ceeEEEeec--cchhhhHHHHhhCc
Confidence 469999986 67777655555433
Done!