Query 018027
Match_columns 362
No_of_seqs 108 out of 130
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 08:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018027.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018027hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ll2a_ c.68.1.14 (A:) Glycoge 17.8 27 0.002 28.9 2.3 22 150-171 93-114 (263)
2 d1rrpb_ b.55.1.3 (B:) Nuclear 17.5 23 0.0017 27.4 1.6 39 44-82 2-46 (134)
3 d1ga8a_ c.68.1.4 (A:) Galactos 14.0 37 0.0027 28.3 2.1 34 151-184 95-131 (282)
4 d1k1ga_ d.51.1.1 (A:) RNA spli 12.3 75 0.0055 24.4 3.4 20 53-72 60-79 (122)
5 d1r4ga_ a.8.5.1 (A:) RNA polym 11.9 51 0.0037 22.3 1.9 19 336-354 34-52 (53)
6 d1omza_ c.68.1.15 (A:) Alpha-1 11.4 56 0.0041 24.5 2.3 15 150-164 80-94 (265)
7 d1lzia_ c.68.1.9 (A:) Glycosyl 9.3 65 0.0048 28.5 2.2 21 151-171 141-161 (283)
8 d1o7qa_ c.68.1.9 (A:) alpha-1, 9.2 64 0.0047 28.7 2.1 21 151-171 136-156 (287)
9 d1yfua1 b.82.1.20 (A:1-174) 3- 8.7 77 0.0056 26.3 2.3 15 134-148 3-17 (174)
10 d1vioa1 d.265.1.3 (A:58-231) R 7.7 28 0.002 27.6 -1.0 14 129-142 2-15 (174)
No 1
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=17.84 E-value=27 Score=28.88 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=19.0
Q ss_pred CCccEEEEecCCeeeecCCCCC
Q 018027 150 IEEEYILMAEPDHIFVKPLPNL 171 (362)
Q Consensus 150 i~e~~VlmlDpD~I~~rPl~~~ 171 (362)
.+.+-||-||+|+|+++++..+
T Consensus 93 ~~ydkvlYLDaD~lv~~~id~L 114 (263)
T d1ll2a_ 93 TQYSKCVFMDADTLVLANIDDL 114 (263)
T ss_dssp TTCSEEEEECTTEEECSCCGGG
T ss_pred cccceEEEeCCCEEEecCHHHH
Confidence 4568999999999999999764
No 2
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.45 E-value=23 Score=27.40 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=26.9
Q ss_pred CCcccccCccCCCCCCCCeeEEEEecCCCCcc------chhhhhh
Q 018027 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS------QWQSRIM 82 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~H~vfSt~cs~Y~------~WQsrim 82 (362)
+.|++++|.+..-......=-++|+.-|..|. .|+.|+.
T Consensus 2 f~p~~~l~~~v~~~tgEE~E~~if~~r~KL~~~~~~~~~WkerGv 46 (134)
T d1rrpb_ 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGI 46 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEE
T ss_pred ccCcccCCCccceecCccCcEEEEEEeeEEEEEcCCCCceeeeeE
Confidence 57999999877644444445788888887754 4766654
No 3
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=13.96 E-value=37 Score=28.29 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=23.7
Q ss_pred CccEEEEecCCeeeecCCCCC---CCCCCcccccccc
Q 018027 151 EEEYILMAEPDHIFVKPLPNL---AQGNHPAGFPFFY 184 (362)
Q Consensus 151 ~e~~VlmlDpD~I~~rPl~~~---~~~g~p~a~~f~Y 184 (362)
+-+-||-||+|+|+++++..+ ..++..+|+.-.+
T Consensus 95 ~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~ 131 (282)
T d1ga8a_ 95 DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDL 131 (282)
T ss_dssp SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECH
T ss_pred ccceEEEecCCEEEecchHHHHhcccccceeeeehhh
Confidence 346799999999999998653 3455555554443
No 4
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.34 E-value=75 Score=24.44 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=14.6
Q ss_pred cCCCCCCCCeeEEEEecCCC
Q 018027 53 KTGGGNSGMRFHVALTATDA 72 (362)
Q Consensus 53 ~~~~~~~~~~~H~vfSt~cs 72 (362)
..........+|+.+|+++.
T Consensus 60 ~~~~~~~~epLHv~I~a~~~ 79 (122)
T d1k1ga_ 60 GQMLPGEDEPLHALVTANTM 79 (122)
T ss_dssp CCCSCCSSCCEEEEEEESSH
T ss_pred CCCCCCCCCCceEEEecCCh
Confidence 33445567789999999874
No 5
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=11.91 E-value=51 Score=22.32 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHhhcCC
Q 018027 336 PESVVRLVKMVNEATANIP 354 (362)
Q Consensus 336 ~~~~~~lv~~~nea~~~lp 354 (362)
.|+|-.+.+|+||-+.+|-
T Consensus 34 d~EV~evMdlf~EDi~slt 52 (53)
T d1r4ga_ 34 DQEVKAVMELVEEDIESLT 52 (53)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 5678889999999998764
No 6
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.44 E-value=56 Score=24.46 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=13.3
Q ss_pred CCccEEEEecCCeee
Q 018027 150 IEEEYILMAEPDHIF 164 (362)
Q Consensus 150 i~e~~VlmlDpD~I~ 164 (362)
.+.|||+.+|+|-++
T Consensus 80 a~ge~i~~lD~D~~~ 94 (265)
T d1omza_ 80 VETNAVLMVDDDTLI 94 (265)
T ss_dssp CCSSEEEEECTTEEE
T ss_pred CCcCEEEEeCcccCC
Confidence 477999999999887
No 7
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.30 E-value=65 Score=28.55 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=18.8
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 018027 151 EEEYILMAEPDHIFVKPLPNL 171 (362)
Q Consensus 151 ~e~~VlmlDpD~I~~rPl~~~ 171 (362)
+.||++-+|+||+|..++...
T Consensus 141 e~DyLf~~DaDm~f~~~vg~E 161 (283)
T d1lzia_ 141 EVDYLVCVDVDMEFRDHVGVE 161 (283)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCEEEEeecceEEecccccE
Confidence 569999999999999999774
No 8
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.24 E-value=64 Score=28.67 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.6
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 018027 151 EEEYILMAEPDHIFVKPLPNL 171 (362)
Q Consensus 151 ~e~~VlmlDpD~I~~rPl~~~ 171 (362)
+.+|++-+|+||+|..++...
T Consensus 136 e~Dylf~~DaDm~f~~~vg~E 156 (287)
T d1o7qa_ 136 EVDFLFCMDVDQVFQDKFGVE 156 (287)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCeEEEEeCCceEecccccc
Confidence 459999999999999999764
No 9
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}
Probab=8.70 E-value=77 Score=26.28 Aligned_cols=15 Identities=20% Similarity=0.833 Sum_probs=13.6
Q ss_pred ccCchhHHHHHHHhc
Q 018027 134 VLNRPWAFVQWLEKA 148 (362)
Q Consensus 134 v~NKP~A~~qWL~~a 148 (362)
.+.||.-|.+|++..
T Consensus 3 ~~~~P~n~~~Wieen 17 (174)
T d1yfua1 3 TYGAPFNFPRWIDEH 17 (174)
T ss_dssp TTCSCCCHHHHHHHT
T ss_pred cccCCccHHHHHHhh
Confidence 578999999999987
No 10
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=7.71 E-value=28 Score=27.63 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.8
Q ss_pred CCCCcccCchhHHH
Q 018027 129 DRGYIVLNRPWAFV 142 (362)
Q Consensus 129 dd~Y~v~NKP~A~~ 142 (362)
++.|.++|||.++.
T Consensus 2 ~~~Yi~lNKP~G~~ 15 (174)
T d1vioa1 2 EGQYFMLNKPQGCV 15 (174)
T ss_dssp CCCEEEEEECTTCB
T ss_pred CCEEEEEECCCCEE
Confidence 46899999999974
Done!