BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018028
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 314 CRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 362
C+ C +KE SV+ +PC HL +C C L CP+C ++ ++ LS
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSL-RKCPICRGIIKGTVRTFLS 345
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 314 CRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 362
C+ C +KE S++ +PC HL +C C L CP+C + ++ LS
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSL-RKCPICRSTIKGTVRTFLS 74
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 307 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 349
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 334 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTAWQESDGQGCPFC 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 307 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 349
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 328 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 373
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 307 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 349
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 328 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 373
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 307 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 349
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 330 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 375
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.6 bits (70), Expect = 0.63, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 307 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 349
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 22 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTAWQESDGQGCPFC 67
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 307 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 349
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 330 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 375
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 312 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNL 361
MLC C E+E + PC H C C + + SCPVC V+ HV L
Sbjct: 19 MLCMVCCEEEINSTFCPCGHTVCCESCAA-QLQSCPVCRSRVEHVQHVYL 67
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 313 LCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 362
LC+ C ++ +++ +PC HL C C + CP+C V+ + +S
Sbjct: 27 LCKICMDRNIAIVFVPCGHLVTCKQCAE-AVDKCPMCYTVITFKQKIFMS 75
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 313 LCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 362
LC+ C ++ +++ +PC HL C C + CP+C V+ + +S
Sbjct: 26 LCKICMDRNIAIVFVPCGHLVTCKQCAE-AVDKCPMCYTVITFKQKIFMS 74
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 307 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 349
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 20 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 65
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 313 LCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVV 353
LC+ C ++ +++ +PC HL C C + CP+C V+
Sbjct: 26 LCKICMDRNIAIVFVPCGHLVTCKQCAE-AVDKCPMCYTVI 65
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 307 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 349
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 23 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 68
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 314 CRRCGEKESSVLLLPCRHLCLCTVCGSCLIG--SCPVCNFVVDASLHVNLS 362
C+ C ++ S++ +PC HL VC C G CP+C V + + LS
Sbjct: 16 CKVCLDRAVSIVFVPCGHL----VCAECAPGLQLCPICRAPVRSRVRTFLS 62
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 325 LLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASL 357
+LLPCRH CLC C CP+C V S
Sbjct: 29 VLLPCRHTCLCDGCVK-YFQQCPMCRQFVQESF 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,454,241
Number of Sequences: 62578
Number of extensions: 262558
Number of successful extensions: 678
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 22
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)