Query 018028
Match_columns 362
No_of_seqs 215 out of 1119
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 8.7E-38 1.9E-42 289.8 10.7 189 155-361 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.2 4.1E-12 8.9E-17 125.8 1.1 51 311-361 290-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 98.9 6.1E-10 1.3E-14 81.1 1.1 44 312-355 3-49 (50)
4 KOG4275 Predicted E3 ubiquitin 98.8 7.2E-10 1.6E-14 107.9 -1.3 50 311-361 300-349 (350)
5 KOG4172 Predicted E3 ubiquitin 98.8 1.6E-10 3.4E-15 87.6 -4.6 51 312-362 8-62 (62)
6 KOG1571 Predicted E3 ubiquitin 98.6 4.2E-09 9.2E-14 104.8 -0.5 51 311-362 305-355 (355)
7 KOG1785 Tyrosine kinase negati 97.4 2.9E-05 6.2E-10 79.1 0.0 54 307-361 365-423 (563)
8 KOG0978 E3 ubiquitin ligase in 97.2 0.0015 3.4E-08 70.7 10.2 46 309-355 641-690 (698)
9 PF13923 zf-C3HC4_2: Zinc fing 97.1 0.00016 3.4E-09 50.2 0.3 35 314-349 1-39 (39)
10 PHA02929 N1R/p28-like protein; 97.0 0.00045 9.6E-09 66.4 2.5 47 312-359 175-232 (238)
11 PF14634 zf-RING_5: zinc-RING 96.9 0.00029 6.3E-09 50.2 0.8 37 314-351 2-44 (44)
12 PLN03208 E3 ubiquitin-protein 96.9 0.00053 1.1E-08 64.0 2.0 44 311-355 18-80 (193)
13 PF13639 zf-RING_2: Ring finge 96.8 0.00035 7.6E-09 49.4 0.6 37 313-350 2-44 (44)
14 smart00184 RING Ring finger. E 96.7 0.00065 1.4E-08 44.3 1.0 35 314-349 1-39 (39)
15 KOG0823 Predicted E3 ubiquitin 96.7 0.00071 1.5E-08 64.6 1.7 47 310-357 46-98 (230)
16 cd00162 RING RING-finger (Real 96.6 0.0009 2E-08 45.2 1.2 40 313-353 1-45 (45)
17 PF14447 Prok-RING_4: Prokaryo 96.4 0.0015 3.2E-08 49.8 1.6 43 312-355 8-51 (55)
18 KOG0317 Predicted E3 ubiquitin 96.3 0.0011 2.4E-08 65.0 0.6 50 310-360 238-290 (293)
19 PF00097 zf-C3HC4: Zinc finger 96.2 0.0016 3.4E-08 45.0 0.4 35 314-349 1-41 (41)
20 KOG0320 Predicted E3 ubiquitin 95.9 0.0018 3.9E-08 59.9 -0.2 49 312-361 132-187 (187)
21 TIGR00599 rad18 DNA repair pro 95.7 0.0034 7.4E-08 64.4 0.8 45 310-355 25-72 (397)
22 KOG2164 Predicted E3 ubiquitin 95.4 0.0063 1.4E-07 63.8 1.4 44 311-355 186-237 (513)
23 PHA02926 zinc finger-like prot 94.9 0.0064 1.4E-07 58.2 -0.3 45 310-355 169-231 (242)
24 KOG2177 Predicted E3 ubiquitin 94.9 0.0058 1.2E-07 54.9 -0.6 40 311-351 13-55 (386)
25 COG5236 Uncharacterized conser 94.7 0.014 3E-07 59.1 1.4 46 310-356 60-110 (493)
26 PF15227 zf-C3HC4_4: zinc fing 94.6 0.013 2.8E-07 41.7 0.8 35 314-349 1-42 (42)
27 COG5574 PEX10 RING-finger-cont 94.5 0.011 2.4E-07 57.6 0.3 44 310-354 214-262 (271)
28 smart00504 Ubox Modified RING 94.5 0.018 4E-07 42.7 1.3 43 312-355 2-47 (63)
29 COG5540 RING-finger-containing 94.1 0.025 5.4E-07 56.5 1.7 43 311-354 323-372 (374)
30 PF13445 zf-RING_UBOX: RING-ty 93.7 0.018 3.9E-07 41.6 -0.0 27 314-342 1-31 (43)
31 KOG4692 Predicted E3 ubiquitin 93.3 0.024 5.3E-07 57.6 0.1 45 309-354 420-467 (489)
32 COG5432 RAD18 RING-finger-cont 93.0 0.031 6.8E-07 55.5 0.4 42 312-354 26-70 (391)
33 COG5243 HRD1 HRD ubiquitin lig 92.3 0.043 9.3E-07 56.1 0.2 42 310-353 286-344 (491)
34 KOG0802 E3 ubiquitin ligase [P 91.1 0.054 1.2E-06 57.3 -0.5 42 312-354 292-341 (543)
35 KOG0287 Postreplication repair 90.9 0.053 1.1E-06 54.9 -0.8 45 311-356 23-70 (442)
36 PF12678 zf-rbx1: RING-H2 zinc 89.4 0.14 3.1E-06 40.3 0.7 28 322-350 43-73 (73)
37 KOG4628 Predicted E3 ubiquitin 89.3 0.23 5.1E-06 50.4 2.3 43 313-356 231-280 (348)
38 PF15619 Lebercilin: Ciliary p 87.8 18 0.00039 33.9 13.6 94 158-257 50-151 (194)
39 PF00038 Filament: Intermediat 86.9 31 0.00067 33.4 16.6 97 159-259 181-283 (312)
40 KOG1814 Predicted E3 ubiquitin 86.7 0.21 4.5E-06 51.7 0.1 46 308-354 181-240 (445)
41 PF09726 Macoilin: Transmembra 86.5 24 0.00053 39.1 15.7 56 204-259 546-601 (697)
42 KOG3002 Zn finger protein [Gen 86.2 0.33 7.1E-06 48.3 1.2 44 310-355 47-92 (299)
43 KOG2113 Predicted RNA binding 86.0 0.55 1.2E-05 47.4 2.6 52 309-360 341-393 (394)
44 PF12240 Angiomotin_C: Angiomo 85.2 23 0.0005 33.8 12.8 76 167-251 70-163 (205)
45 KOG2879 Predicted E3 ubiquitin 84.6 0.6 1.3E-05 46.2 2.1 45 309-354 237-287 (298)
46 KOG0804 Cytoplasmic Zn-finger 84.5 31 0.00068 36.6 14.5 90 156-245 326-424 (493)
47 KOG1039 Predicted E3 ubiquitin 84.0 0.44 9.5E-06 48.4 0.9 47 309-356 159-223 (344)
48 PF14835 zf-RING_6: zf-RING of 83.2 0.8 1.7E-05 36.2 1.9 42 311-353 7-50 (65)
49 KOG3039 Uncharacterized conser 83.2 10 0.00022 37.4 9.7 46 309-355 219-271 (303)
50 KOG4159 Predicted E3 ubiquitin 81.1 0.57 1.2E-05 48.4 0.5 46 309-355 82-130 (398)
51 PRK09039 hypothetical protein; 81.1 65 0.0014 32.6 15.1 53 208-260 135-187 (343)
52 PF04641 Rtf2: Rtf2 RING-finge 80.7 1 2.2E-05 43.5 2.0 47 309-356 111-163 (260)
53 KOG1813 Predicted E3 ubiquitin 80.5 0.65 1.4E-05 46.3 0.7 46 313-359 243-291 (313)
54 PF04710 Pellino: Pellino; In 79.0 0.62 1.3E-05 48.1 0.0 42 320-361 356-411 (416)
55 PF12126 DUF3583: Protein of u 78.7 69 0.0015 32.4 13.9 65 156-231 25-89 (324)
56 KOG0288 WD40 repeat protein Ti 78.5 51 0.0011 34.7 13.4 70 159-232 3-77 (459)
57 PF01166 TSC22: TSC-22/dip/bun 75.7 3.7 8.1E-05 31.9 3.4 31 210-240 14-44 (59)
58 TIGR01837 PHA_granule_1 poly(h 74.7 31 0.00067 29.7 9.3 66 165-230 44-116 (118)
59 PF14362 DUF4407: Domain of un 74.3 77 0.0017 30.8 13.1 58 163-231 106-163 (301)
60 PF11180 DUF2968: Protein of u 74.2 70 0.0015 30.3 12.1 80 152-231 101-182 (192)
61 KOG3091 Nuclear pore complex, 73.9 20 0.00043 38.4 9.2 70 189-262 352-428 (508)
62 PF15397 DUF4618: Domain of un 73.5 79 0.0017 31.2 12.8 80 162-241 135-224 (258)
63 PF07888 CALCOCO1: Calcium bin 73.1 1.5E+02 0.0032 32.4 15.8 74 172-247 170-243 (546)
64 KOG0825 PHD Zn-finger protein 73.0 0.69 1.5E-05 51.4 -1.6 46 312-358 124-175 (1134)
65 KOG1103 Predicted coiled-coil 73.0 68 0.0015 33.4 12.5 40 152-191 136-185 (561)
66 PRK10884 SH3 domain-containing 72.9 26 0.00056 33.2 9.0 33 203-235 125-157 (206)
67 PF15254 CCDC14: Coiled-coil d 72.9 34 0.00074 38.5 11.1 58 174-231 495-557 (861)
68 PF11559 ADIP: Afadin- and alp 72.7 32 0.0007 30.2 9.1 52 203-254 59-110 (151)
69 COG4985 ABC-type phosphate tra 72.7 22 0.00048 34.9 8.6 19 152-170 158-176 (289)
70 PF13815 Dzip-like_N: Iguana/D 72.4 15 0.00032 31.5 6.7 34 200-233 84-117 (118)
71 PF12329 TMF_DNA_bd: TATA elem 72.0 41 0.00089 26.8 8.7 57 202-258 4-60 (74)
72 TIGR03752 conj_TIGR03752 integ 71.8 38 0.00083 36.1 10.8 33 156-189 64-96 (472)
73 KOG0980 Actin-binding protein 71.5 1.4E+02 0.0031 34.3 15.4 50 210-259 459-508 (980)
74 COG3074 Uncharacterized protei 71.0 32 0.00068 27.9 7.7 30 211-240 40-69 (79)
75 PF04564 U-box: U-box domain; 70.8 2.1 4.5E-05 33.5 1.1 44 311-355 4-51 (73)
76 smart00787 Spc7 Spc7 kinetocho 70.8 52 0.0011 33.0 11.1 28 204-231 212-239 (312)
77 PF04216 FdhE: Protein involve 70.3 2.5 5.5E-05 41.2 1.7 48 312-360 173-228 (290)
78 PF13747 DUF4164: Domain of un 69.9 62 0.0013 26.7 10.9 46 206-254 35-80 (89)
79 KOG0828 Predicted E3 ubiquitin 69.7 1 2.2E-05 47.9 -1.2 46 309-355 569-635 (636)
80 COG5152 Uncharacterized conser 68.9 1.1 2.4E-05 42.7 -1.0 47 312-359 197-246 (259)
81 PF06785 UPF0242: Uncharacteri 68.6 1E+02 0.0022 31.9 12.4 29 157-186 91-119 (401)
82 KOG1001 Helicase-like transcri 68.4 1.6 3.4E-05 48.0 -0.1 41 312-354 455-500 (674)
83 KOG2932 E3 ubiquitin ligase in 68.2 1.9 4.1E-05 43.6 0.4 40 313-354 92-134 (389)
84 PRK11637 AmiB activator; Provi 68.1 1.2E+02 0.0026 31.1 13.4 17 154-170 43-59 (428)
85 COG2433 Uncharacterized conser 68.0 51 0.0011 36.3 10.9 27 203-229 474-500 (652)
86 KOG0612 Rho-associated, coiled 67.1 91 0.002 37.0 13.1 90 165-259 464-553 (1317)
87 PF10205 KLRAQ: Predicted coil 67.0 52 0.0011 28.3 8.7 61 171-233 10-70 (102)
88 KOG2113 Predicted RNA binding 66.8 3.2 6.9E-05 42.1 1.6 50 310-359 135-188 (394)
89 PF07111 HCR: Alpha helical co 64.6 2E+02 0.0043 32.4 14.6 73 159-231 95-183 (739)
90 cd07665 BAR_SNX1 The Bin/Amphi 64.5 1.4E+02 0.0031 28.9 13.4 88 157-245 82-180 (234)
91 PRK10920 putative uroporphyrin 64.1 90 0.0019 32.5 11.5 84 152-237 50-134 (390)
92 PF10272 Tmpp129: Putative tra 64.0 4.4 9.5E-05 41.5 2.0 34 309-353 301-350 (358)
93 PF00804 Syntaxin: Syntaxin; 64.0 69 0.0015 25.1 9.4 61 172-234 13-73 (103)
94 KOG4797 Transcriptional regula 63.8 30 0.00065 30.2 6.7 31 210-240 67-97 (123)
95 PF12325 TMF_TATA_bd: TATA ele 63.5 1E+02 0.0022 26.9 14.0 97 148-258 13-109 (120)
96 KOG0971 Microtubule-associated 63.4 1.3E+02 0.0028 35.0 13.1 50 209-258 447-503 (1243)
97 KOG3859 Septins (P-loop GTPase 63.1 65 0.0014 32.9 9.9 21 219-239 379-399 (406)
98 PF09731 Mitofilin: Mitochondr 62.4 2.2E+02 0.0047 30.3 15.6 26 219-244 380-405 (582)
99 PF15290 Syntaphilin: Golgi-lo 62.1 74 0.0016 32.0 10.0 24 203-226 82-105 (305)
100 PF04156 IncA: IncA protein; 62.0 1.2E+02 0.0026 27.3 14.5 52 206-257 126-177 (191)
101 PF05121 GvpK: Gas vesicle pro 61.9 42 0.0009 28.1 7.0 37 195-231 27-66 (88)
102 smart00338 BRLZ basic region l 61.6 68 0.0015 24.3 8.6 31 206-236 29-59 (65)
103 smart00502 BBC B-Box C-termina 61.5 86 0.0019 25.4 11.2 42 156-201 29-70 (127)
104 PF10168 Nup88: Nuclear pore c 61.3 1.1E+02 0.0023 34.4 12.1 51 211-261 601-662 (717)
105 KOG1029 Endocytic adaptor prot 61.2 1.2E+02 0.0027 34.6 12.4 18 210-227 444-461 (1118)
106 PF11544 Spc42p: Spindle pole 60.7 63 0.0014 26.4 7.7 36 202-237 11-46 (76)
107 KOG1916 Nuclear protein, conta 60.2 3.4E+02 0.0074 31.9 16.2 73 154-229 879-958 (1283)
108 PF00038 Filament: Intermediat 59.8 1.7E+02 0.0037 28.3 12.3 82 152-239 9-90 (312)
109 PF15070 GOLGA2L5: Putative go 59.7 1.6E+02 0.0035 32.4 13.1 84 159-245 164-255 (617)
110 KOG0977 Nuclear envelope prote 59.3 47 0.001 36.1 8.7 63 172-234 112-179 (546)
111 PF13935 Ead_Ea22: Ead/Ea22-li 59.1 84 0.0018 27.7 9.0 56 161-223 80-139 (139)
112 cd00729 rubredoxin_SM Rubredox 58.5 5 0.00011 27.5 0.9 16 343-358 18-33 (34)
113 COG5220 TFB3 Cdk activating ki 58.0 2 4.4E-05 42.1 -1.5 40 311-351 10-61 (314)
114 PRK04863 mukB cell division pr 58.0 2.9E+02 0.0063 33.7 15.6 31 207-237 366-396 (1486)
115 KOG4571 Activating transcripti 57.8 41 0.00089 33.8 7.5 30 210-239 255-284 (294)
116 PF10186 Atg14: UV radiation r 57.8 1.7E+02 0.0037 27.6 13.6 13 160-172 36-48 (302)
117 PF04380 BMFP: Membrane fusoge 56.7 92 0.002 25.0 8.1 21 210-230 57-77 (79)
118 TIGR01562 FdhE formate dehydro 56.4 52 0.0011 33.1 8.0 40 313-352 186-233 (305)
119 PF09726 Macoilin: Transmembra 56.1 3.1E+02 0.0067 30.7 14.6 38 222-259 543-580 (697)
120 PRK10884 SH3 domain-containing 55.8 1.9E+02 0.004 27.5 12.0 28 208-235 123-150 (206)
121 PF14775 NYD-SP28_assoc: Sperm 55.1 83 0.0018 24.2 7.3 49 171-228 10-58 (60)
122 PF07412 Geminin: Geminin; In 54.5 79 0.0017 30.2 8.5 59 175-248 105-163 (200)
123 COG2959 HemX Uncharacterized e 54.4 1.4E+02 0.0029 31.3 10.7 83 152-238 46-133 (391)
124 KOG0980 Actin-binding protein 54.2 85 0.0019 36.0 9.9 49 211-259 352-400 (980)
125 KOG0163 Myosin class VI heavy 54.1 2.6E+02 0.0056 32.2 13.3 23 211-233 957-979 (1259)
126 PRK00888 ftsB cell division pr 54.0 38 0.00082 28.7 5.7 35 204-238 28-62 (105)
127 KOG0241 Kinesin-like protein [ 54.0 47 0.001 38.7 7.9 45 194-238 380-425 (1714)
128 PRK00888 ftsB cell division pr 52.2 46 0.00099 28.2 6.0 29 203-231 34-62 (105)
129 smart00744 RINGv The RING-vari 52.2 5.8 0.00012 29.1 0.5 37 313-350 1-49 (49)
130 KOG0249 LAR-interacting protei 51.9 1E+02 0.0023 34.8 9.9 85 171-259 168-258 (916)
131 KOG3842 Adaptor protein Pellin 51.9 7.2 0.00016 39.7 1.2 53 309-361 339-424 (429)
132 PF03854 zf-P11: P-11 zinc fin 51.9 4.5 9.7E-05 30.4 -0.2 43 313-357 4-49 (50)
133 smart00503 SynN Syntaxin N-ter 51.8 1.3E+02 0.0028 24.5 10.7 84 172-259 14-103 (117)
134 PF15066 CAGE1: Cancer-associa 51.3 3E+02 0.0066 29.7 12.8 59 203-261 453-526 (527)
135 PF12128 DUF3584: Protein of u 51.1 3.1E+02 0.0068 32.3 14.3 69 161-230 720-791 (1201)
136 PF14570 zf-RING_4: RING/Ubox 50.8 4.2 9.2E-05 30.3 -0.4 25 328-353 19-47 (48)
137 KOG4657 Uncharacterized conser 50.6 2.6E+02 0.0055 27.5 15.2 86 151-238 15-100 (246)
138 PRK00409 recombination and DNA 50.5 2.6E+02 0.0055 31.6 13.0 19 80-100 359-377 (782)
139 cd00350 rubredoxin_like Rubred 49.8 8.1 0.00018 26.0 0.9 16 343-358 17-32 (33)
140 PF11500 Cut12: Spindle pole b 49.7 1.3E+02 0.0028 27.6 8.7 34 190-230 92-125 (152)
141 PRK06975 bifunctional uroporph 49.3 1.8E+02 0.0039 32.0 11.4 78 159-238 343-420 (656)
142 PF06005 DUF904: Protein of un 49.2 1.4E+02 0.0029 23.9 10.9 23 217-239 39-61 (72)
143 PF14257 DUF4349: Domain of un 49.1 59 0.0013 31.0 6.9 24 203-226 169-192 (262)
144 PRK14714 DNA polymerase II lar 49.0 14 0.0003 43.6 3.0 48 311-359 667-725 (1337)
145 PRK11637 AmiB activator; Provi 48.6 2.5E+02 0.0055 28.8 11.9 25 205-229 91-115 (428)
146 COG1579 Zn-ribbon protein, pos 48.5 2.7E+02 0.0059 27.2 12.4 36 203-238 89-124 (239)
147 KOG3564 GTPase-activating prot 48.2 2.1E+02 0.0045 31.1 11.1 76 173-257 28-103 (604)
148 PF10367 Vps39_2: Vacuolar sor 47.9 14 0.00029 29.8 2.1 28 312-340 79-108 (109)
149 PF14193 DUF4315: Domain of un 47.8 84 0.0018 25.9 6.6 23 208-230 6-28 (83)
150 smart00338 BRLZ basic region l 47.8 1.2E+02 0.0026 22.9 7.3 35 218-252 27-61 (65)
151 TIGR01069 mutS2 MutS2 family p 47.6 2.7E+02 0.0058 31.4 12.6 14 86-99 358-371 (771)
152 PF08700 Vps51: Vps51/Vps67; 47.0 1.4E+02 0.003 23.4 9.6 52 166-229 26-77 (87)
153 TIGR03319 YmdA_YtgF conserved 47.0 4E+02 0.0086 28.7 15.0 6 324-329 246-251 (514)
154 PF07888 CALCOCO1: Calcium bin 46.6 4.3E+02 0.0093 28.9 15.7 22 234-255 293-314 (546)
155 PF04859 DUF641: Plant protein 46.4 1.4E+02 0.003 26.7 8.2 71 153-228 47-126 (131)
156 PF04340 DUF484: Protein of un 46.4 64 0.0014 30.2 6.6 18 212-229 49-66 (225)
157 PF00769 ERM: Ezrin/radixin/mo 46.1 67 0.0015 31.0 6.8 42 210-251 26-67 (246)
158 PF12761 End3: Actin cytoskele 45.8 44 0.00096 31.7 5.4 49 208-259 94-142 (195)
159 PRK05097 Ter macrodomain organ 45.5 27 0.00057 31.7 3.6 74 159-259 46-124 (150)
160 PRK02224 chromosome segregatio 45.3 4.8E+02 0.01 29.1 15.4 45 205-249 525-569 (880)
161 PF09730 BicD: Microtubule-ass 44.7 5.1E+02 0.011 29.3 14.2 41 158-198 48-101 (717)
162 TIGR01069 mutS2 MutS2 family p 44.6 2.5E+02 0.0053 31.7 11.7 13 160-172 506-518 (771)
163 COG4942 Membrane-bound metallo 44.6 2.4E+02 0.0053 29.8 10.9 31 203-233 80-110 (420)
164 PRK13729 conjugal transfer pil 44.0 73 0.0016 34.0 7.2 30 210-239 90-119 (475)
165 PF10198 Ada3: Histone acetylt 43.5 1.8E+02 0.0039 25.7 8.5 60 198-261 35-94 (131)
166 PF04799 Fzo_mitofusin: fzo-li 43.3 1.8E+02 0.004 27.1 8.9 54 194-258 111-164 (171)
167 KOG0994 Extracellular matrix g 43.3 3E+02 0.0064 33.2 12.0 35 212-246 1614-1648(1758)
168 PRK11448 hsdR type I restricti 42.4 89 0.0019 36.7 8.2 22 214-235 188-209 (1123)
169 PLN02189 cellulose synthase 42.4 15 0.00033 42.4 2.1 44 311-354 34-87 (1040)
170 COG3120 Uncharacterized protei 42.4 1.3E+02 0.0029 27.0 7.4 43 209-260 83-125 (149)
171 cd00179 SynN Syntaxin N-termin 42.2 2.2E+02 0.0047 24.3 11.6 21 212-232 50-70 (151)
172 PF08172 CASP_C: CASP C termin 41.7 75 0.0016 31.0 6.4 22 214-235 90-111 (248)
173 PRK15422 septal ring assembly 41.5 2E+02 0.0044 23.7 8.6 29 211-239 40-68 (79)
174 PRK00409 recombination and DNA 41.4 2.9E+02 0.0063 31.2 11.7 14 159-172 510-523 (782)
175 PHA02562 46 endonuclease subun 41.2 4.4E+02 0.0095 27.5 13.9 45 194-238 204-248 (562)
176 KOG0311 Predicted E3 ubiquitin 41.2 2.5 5.4E-05 43.3 -3.9 46 310-356 42-92 (381)
177 KOG0297 TNF receptor-associate 41.1 15 0.00032 37.8 1.6 48 310-358 20-71 (391)
178 KOG4673 Transcription factor T 40.8 3.9E+02 0.0085 30.4 12.1 23 198-220 472-494 (961)
179 PRK14140 heat shock protein Gr 40.7 84 0.0018 29.6 6.4 24 165-189 37-60 (191)
180 PF07716 bZIP_2: Basic region 40.6 1.5E+02 0.0032 21.8 7.8 26 207-232 29-54 (54)
181 PF05565 Sipho_Gp157: Siphovir 40.4 1.6E+02 0.0035 26.5 8.0 53 209-261 39-91 (162)
182 PF04977 DivIC: Septum formati 40.1 76 0.0016 24.2 5.1 32 205-236 19-50 (80)
183 KOG1962 B-cell receptor-associ 39.4 2.2E+02 0.0048 27.5 9.0 23 205-227 167-189 (216)
184 COG5175 MOT2 Transcriptional r 39.4 8.7 0.00019 39.5 -0.4 42 313-355 16-65 (480)
185 PF08112 ATP-synt_E_2: ATP syn 39.3 1.8E+02 0.0038 22.4 6.8 47 165-219 7-53 (56)
186 PRK10963 hypothetical protein; 39.2 95 0.0021 29.3 6.6 18 212-229 46-63 (223)
187 PF08702 Fib_alpha: Fibrinogen 39.1 2.9E+02 0.0062 24.8 10.9 51 153-207 20-72 (146)
188 PF12718 Tropomyosin_1: Tropom 39.1 2.8E+02 0.0061 24.7 11.4 82 172-257 1-85 (143)
189 PF06785 UPF0242: Uncharacteri 39.0 4.7E+02 0.01 27.2 12.0 57 203-259 155-222 (401)
190 PF12999 PRKCSH-like: Glucosid 38.9 1.5E+02 0.0033 27.7 7.7 21 212-232 148-168 (176)
191 PF13851 GAS: Growth-arrest sp 38.8 3.1E+02 0.0066 25.7 9.8 38 202-239 92-129 (201)
192 PF13863 DUF4200: Domain of un 38.8 2.3E+02 0.0051 23.7 10.3 27 206-232 77-103 (126)
193 PF10186 Atg14: UV radiation r 38.8 3.4E+02 0.0074 25.5 16.3 34 228-261 123-156 (302)
194 COG3937 Uncharacterized conser 38.7 96 0.0021 26.9 5.8 44 181-226 61-106 (108)
195 KOG4809 Rab6 GTPase-interactin 38.6 5.9E+02 0.013 28.2 12.9 93 165-257 331-454 (654)
196 PF04124 Dor1: Dor1-like famil 38.5 4.1E+02 0.009 26.5 12.6 83 171-258 19-104 (338)
197 PRK00286 xseA exodeoxyribonucl 38.3 4.6E+02 0.01 26.9 15.5 31 188-218 312-342 (438)
198 KOG1002 Nucleotide excision re 37.9 6.3 0.00014 42.6 -1.7 44 310-354 535-586 (791)
199 PF10083 DUF2321: Uncharacteri 37.7 8 0.00017 35.5 -0.9 26 334-359 30-55 (158)
200 PF10234 Cluap1: Clusterin-ass 37.6 2.1E+02 0.0045 28.4 8.8 57 165-223 161-217 (267)
201 PRK13182 racA polar chromosome 37.5 2.3E+02 0.0049 26.3 8.6 32 198-229 113-144 (175)
202 KOG4466 Component of histone d 37.3 3.9E+02 0.0086 26.9 10.6 17 219-235 118-134 (291)
203 PF14282 FlxA: FlxA-like prote 37.1 2E+02 0.0043 24.3 7.5 53 209-261 18-74 (106)
204 PRK03564 formate dehydrogenase 36.6 34 0.00074 34.5 3.3 41 312-352 188-235 (309)
205 PF06657 Cep57_MT_bd: Centroso 36.4 2.2E+02 0.0049 22.9 7.4 27 148-174 7-33 (79)
206 PRK05892 nucleoside diphosphat 36.4 1.5E+02 0.0032 26.9 7.1 14 214-227 58-71 (158)
207 PHA03415 putative internal vir 36.1 1.1E+02 0.0023 35.1 7.1 62 153-214 298-370 (1019)
208 PRK04863 mukB cell division pr 34.9 9.5E+02 0.02 29.5 16.4 52 205-256 350-401 (1486)
209 COG3851 UhpB Signal transducti 34.8 1.5E+02 0.0032 31.4 7.5 18 244-261 345-362 (497)
210 TIGR02209 ftsL_broad cell divi 34.8 92 0.002 24.4 4.9 35 204-238 25-59 (85)
211 KOG4398 Predicted coiled-coil 34.7 1.7E+02 0.0037 29.6 7.7 55 167-226 10-66 (359)
212 KOG3976 Mitochondrial F1F0-ATP 34.5 4.7E+02 0.01 25.9 12.4 100 159-260 111-217 (247)
213 PF09731 Mitofilin: Mitochondr 34.3 6E+02 0.013 27.1 13.3 14 152-165 293-306 (582)
214 PF06246 Isy1: Isy1-like splic 34.3 1.3E+02 0.0029 29.5 6.8 28 203-230 71-98 (255)
215 PF14738 PaaSYMP: Solute carri 34.0 2.8E+02 0.0061 25.3 8.4 55 164-218 93-147 (154)
216 PF04111 APG6: Autophagy prote 33.9 5E+02 0.011 26.0 12.3 47 194-240 55-102 (314)
217 PF03980 Nnf1: Nnf1 ; InterPr 33.9 2.2E+02 0.0048 23.6 7.3 19 160-178 32-50 (109)
218 PF09728 Taxilin: Myosin-like 33.8 5E+02 0.011 26.0 14.4 98 157-259 80-181 (309)
219 PF05290 Baculo_IE-1: Baculovi 33.7 12 0.00026 33.7 -0.4 45 312-356 81-134 (140)
220 PF05983 Med7: MED7 protein; 33.6 2.3E+02 0.0051 25.7 7.9 48 176-226 114-161 (162)
221 COG1592 Rubrerythrin [Energy p 33.3 16 0.00035 33.7 0.4 30 311-357 134-163 (166)
222 PF14916 CCDC92: Coiled-coil d 33.3 1.1E+02 0.0023 24.0 4.8 23 201-223 19-41 (60)
223 TIGR02680 conserved hypothetic 33.2 9.4E+02 0.02 29.0 15.8 26 205-230 285-310 (1353)
224 PF10779 XhlA: Haemolysin XhlA 33.0 2.4E+02 0.0051 22.0 7.7 48 210-257 6-53 (71)
225 PF08614 ATG16: Autophagy prot 32.7 1.9E+02 0.0041 26.6 7.3 32 205-236 111-142 (194)
226 PHA02562 46 endonuclease subun 32.6 6E+02 0.013 26.5 13.0 29 203-231 358-386 (562)
227 KOG4807 F-actin binding protei 32.5 6.5E+02 0.014 26.9 14.9 76 160-235 365-446 (593)
228 COG4306 Uncharacterized protei 32.5 14 0.00031 33.1 -0.1 26 334-359 30-55 (160)
229 TIGR03185 DNA_S_dndD DNA sulfu 32.1 7E+02 0.015 27.2 14.5 15 212-226 451-465 (650)
230 KOG1853 LIS1-interacting prote 32.1 5.4E+02 0.012 25.9 14.1 22 208-229 120-145 (333)
231 TIGR03545 conserved hypothetic 31.9 3.7E+02 0.0081 29.2 10.4 19 174-192 165-183 (555)
232 KOG2129 Uncharacterized conser 31.6 4.2E+02 0.0091 28.4 10.2 52 169-225 256-308 (552)
233 TIGR02894 DNA_bind_RsfA transc 31.1 3.6E+02 0.0078 25.0 8.6 32 154-185 83-116 (161)
234 PRK02224 chromosome segregatio 31.0 7.9E+02 0.017 27.4 15.3 11 344-354 452-462 (880)
235 PRK09841 cryptic autophosphory 30.7 6.7E+02 0.014 27.8 12.3 89 167-260 250-354 (726)
236 KOG0245 Kinesin-like protein [ 30.7 78 0.0017 37.0 5.1 52 171-231 366-430 (1221)
237 PF13240 zinc_ribbon_2: zinc-r 30.1 25 0.00054 22.2 0.7 19 335-353 2-23 (23)
238 PF14931 IFT20: Intraflagellar 29.6 3.8E+02 0.0083 23.4 9.0 33 216-248 86-118 (120)
239 KOG4796 RNA polymerase II elon 29.3 4E+02 0.0087 29.3 9.8 52 210-261 522-590 (604)
240 COG3159 Uncharacterized protei 29.2 1.9E+02 0.0042 28.0 6.8 20 211-230 46-65 (218)
241 PF05335 DUF745: Protein of un 29.2 4.9E+02 0.011 24.5 14.7 25 154-178 66-90 (188)
242 PF11471 Sugarporin_N: Maltopo 29.0 1.1E+02 0.0024 23.6 4.3 25 217-241 32-56 (60)
243 COG5019 CDC3 Septin family pro 28.8 3.4E+02 0.0073 28.4 8.9 42 188-229 327-368 (373)
244 PRK14139 heat shock protein Gr 28.8 1.3E+02 0.0028 28.2 5.5 25 165-190 32-56 (185)
245 PF09787 Golgin_A5: Golgin sub 28.7 5.8E+02 0.013 27.1 11.1 28 231-258 214-241 (511)
246 TIGR02231 conserved hypothetic 28.7 6.4E+02 0.014 26.6 11.3 12 158-169 78-89 (525)
247 PLN03188 kinesin-12 family pro 28.6 1.1E+03 0.025 28.6 14.2 59 177-235 1132-1198(1320)
248 KOG4848 Extracellular matrix-a 28.6 5.4E+02 0.012 24.8 10.4 52 210-261 125-176 (225)
249 COG2433 Uncharacterized conser 28.5 2.5E+02 0.0055 31.2 8.3 51 209-259 442-495 (652)
250 COG4357 Zinc finger domain con 28.4 25 0.00055 30.1 0.7 44 313-356 37-93 (105)
251 TIGR00414 serS seryl-tRNA synt 28.2 4.7E+02 0.01 27.2 10.0 38 212-263 71-108 (418)
252 PF03357 Snf7: Snf7; InterPro 28.0 3.6E+02 0.0077 23.3 7.9 64 159-230 12-75 (171)
253 PF04977 DivIC: Septum formati 28.0 1.8E+02 0.0039 22.1 5.4 38 204-241 25-62 (80)
254 PF10752 DUF2533: Protein of u 27.4 3.6E+02 0.0078 22.5 7.2 26 152-177 3-28 (84)
255 PF15070 GOLGA2L5: Putative go 27.1 8.9E+02 0.019 26.8 15.8 33 219-251 197-229 (617)
256 COG4026 Uncharacterized protei 27.0 6.3E+02 0.014 25.0 12.0 42 217-258 163-204 (290)
257 PRK14157 heat shock protein Gr 27.0 1.7E+02 0.0037 28.4 6.1 21 171-191 82-102 (227)
258 PRK04023 DNA polymerase II lar 27.0 51 0.0011 38.3 2.9 49 310-359 625-679 (1121)
259 TIGR01005 eps_transp_fam exopo 26.9 8.8E+02 0.019 26.7 13.7 30 231-260 376-405 (754)
260 PRK14155 heat shock protein Gr 26.9 1.7E+02 0.0038 27.8 6.1 16 174-189 21-36 (208)
261 PF05600 DUF773: Protein of un 26.9 8.2E+02 0.018 26.3 12.6 86 176-261 410-497 (507)
262 PRK01885 greB transcription el 26.9 2.2E+02 0.0048 25.6 6.6 19 211-229 48-66 (157)
263 PF11932 DUF3450: Protein of u 26.8 5.6E+02 0.012 24.3 9.8 64 194-257 33-96 (251)
264 PF06364 DUF1068: Protein of u 26.7 5.4E+02 0.012 24.2 10.4 54 177-230 95-165 (176)
265 TIGR01461 greB transcription e 26.6 2.1E+02 0.0046 25.8 6.3 20 210-229 45-64 (156)
266 PRK06342 transcription elongat 26.6 1.3E+02 0.0027 27.5 4.9 25 205-229 59-83 (160)
267 PF12999 PRKCSH-like: Glucosid 26.4 3.4E+02 0.0074 25.4 7.8 19 214-232 157-175 (176)
268 PF06005 DUF904: Protein of un 26.4 3.4E+02 0.0073 21.7 8.8 32 208-239 23-54 (72)
269 PRK02119 hypothetical protein; 26.4 3.3E+02 0.0072 21.6 7.4 51 211-261 3-53 (73)
270 PF10174 Cast: RIM-binding pro 26.3 1E+03 0.022 27.2 15.3 87 172-260 321-407 (775)
271 PRK10698 phage shock protein P 26.2 5.7E+02 0.012 24.3 10.8 82 154-235 98-184 (222)
272 TIGR01010 BexC_CtrB_KpsE polys 26.1 6.6E+02 0.014 25.0 12.0 20 167-186 171-190 (362)
273 PF08202 MIS13: Mis12-Mtw1 pro 26.1 81 0.0018 31.3 3.9 25 216-240 163-187 (301)
274 KOG2129 Uncharacterized conser 25.9 4.9E+02 0.011 27.9 9.5 18 211-228 180-197 (552)
275 KOG1150 Predicted molecular ch 25.8 4.6E+02 0.0099 25.6 8.6 65 168-239 156-223 (250)
276 PF10481 CENP-F_N: Cenp-F N-te 25.6 7.2E+02 0.016 25.2 11.3 48 210-257 60-107 (307)
277 PRK14161 heat shock protein Gr 25.6 3.6E+02 0.0077 25.1 7.8 9 211-219 48-56 (178)
278 PF08614 ATG16: Autophagy prot 25.6 3.8E+02 0.0082 24.6 8.0 26 210-235 151-176 (194)
279 KOG4643 Uncharacterized coiled 25.5 1.2E+03 0.026 27.8 14.2 77 165-241 369-453 (1195)
280 PF10571 UPF0547: Uncharacteri 25.3 46 0.00099 21.7 1.4 18 335-352 3-23 (26)
281 PF07889 DUF1664: Protein of u 25.3 4.8E+02 0.01 23.1 10.9 64 171-239 48-111 (126)
282 PF05010 TACC: Transforming ac 25.2 6E+02 0.013 24.2 13.7 95 155-260 94-190 (207)
283 KOG2391 Vacuolar sorting prote 25.2 6.2E+02 0.013 26.4 9.9 13 35-47 53-65 (365)
284 TIGR02169 SMC_prok_A chromosom 25.2 1E+03 0.022 26.9 16.0 50 206-255 871-920 (1164)
285 COG3883 Uncharacterized protei 25.1 6.9E+02 0.015 24.9 11.9 27 148-174 20-47 (265)
286 KOG0982 Centrosomal protein Nu 24.8 9E+02 0.019 26.1 12.3 26 206-231 293-318 (502)
287 PF03961 DUF342: Protein of un 24.7 4E+02 0.0086 27.7 8.8 20 210-229 375-394 (451)
288 PRK14159 heat shock protein Gr 24.6 2E+02 0.0044 26.7 6.0 25 166-190 23-47 (176)
289 COG5183 SSM4 Protein involved 24.3 32 0.00069 39.2 0.7 45 310-354 11-66 (1175)
290 PF12128 DUF3584: Protein of u 24.3 1.2E+03 0.027 27.5 16.1 22 234-255 721-742 (1201)
291 KOG0243 Kinesin-like protein [ 24.2 1.2E+03 0.025 27.8 12.8 88 173-260 411-512 (1041)
292 KOG0804 Cytoplasmic Zn-finger 24.2 9.3E+02 0.02 26.0 14.4 26 236-261 426-451 (493)
293 PF00769 ERM: Ezrin/radixin/mo 24.1 6.6E+02 0.014 24.2 14.1 36 210-245 82-117 (246)
294 PRK14143 heat shock protein Gr 23.9 2.5E+02 0.0053 27.4 6.6 27 164-191 66-92 (238)
295 COG1196 Smc Chromosome segrega 23.9 1.2E+03 0.027 27.4 16.0 25 215-239 798-822 (1163)
296 PF15397 DUF4618: Domain of un 23.8 7.2E+02 0.016 24.6 13.1 85 175-261 37-136 (258)
297 PF15290 Syntaphilin: Golgi-lo 23.8 7.8E+02 0.017 25.0 10.6 24 175-198 91-114 (305)
298 PRK13922 rod shape-determining 23.8 2E+02 0.0043 27.6 6.0 34 212-245 71-104 (276)
299 KOG4484 Uncharacterized conser 23.7 6.3E+02 0.014 23.9 10.1 70 158-227 27-103 (199)
300 PRK14148 heat shock protein Gr 23.5 2.6E+02 0.0056 26.4 6.5 27 164-191 39-65 (195)
301 KOG4643 Uncharacterized coiled 23.4 4.8E+02 0.01 30.9 9.5 44 205-248 193-236 (1195)
302 PLN02400 cellulose synthase 23.3 50 0.0011 38.6 2.0 44 311-354 36-89 (1085)
303 PHA02825 LAP/PHD finger-like p 23.3 54 0.0012 30.3 1.9 44 310-354 7-59 (162)
304 PHA02107 hypothetical protein 23.3 1.9E+02 0.0041 27.3 5.4 35 196-230 177-211 (216)
305 PF08654 DASH_Dad2: DASH compl 23.3 4.3E+02 0.0093 22.5 7.2 16 202-217 3-18 (103)
306 PF12180 EABR: TSG101 and ALIX 23.2 2.8E+02 0.006 19.6 5.5 33 224-256 2-34 (35)
307 PLN02678 seryl-tRNA synthetase 23.1 6.2E+02 0.013 26.9 9.9 21 243-263 90-110 (448)
308 smart00150 SPEC Spectrin repea 23.1 3.3E+02 0.0072 20.4 8.4 30 209-238 69-98 (101)
309 PF07800 DUF1644: Protein of u 23.0 48 0.001 30.6 1.5 23 336-359 74-96 (162)
310 PF05911 DUF869: Plant protein 23.0 1.2E+03 0.025 26.7 12.6 30 165-194 48-77 (769)
311 PRK14158 heat shock protein Gr 22.9 2.8E+02 0.0061 26.2 6.6 27 164-191 39-65 (194)
312 KOG2068 MOT2 transcription fac 22.7 48 0.001 33.8 1.6 45 311-356 249-300 (327)
313 PRK10947 global DNA-binding tr 22.6 5.5E+02 0.012 22.9 8.1 42 173-214 9-50 (135)
314 PF11740 KfrA_N: Plasmid repli 22.5 4.4E+02 0.0096 21.7 9.9 22 210-231 95-116 (120)
315 KOG0006 E3 ubiquitin-protein l 22.4 41 0.00089 34.5 1.1 31 310-341 220-252 (446)
316 PRK14162 heat shock protein Gr 22.4 2.8E+02 0.0061 26.2 6.5 27 164-191 38-64 (194)
317 cd00730 rubredoxin Rubredoxin; 22.2 32 0.0007 25.6 0.2 11 310-320 33-43 (50)
318 PF10226 DUF2216: Uncharacteri 22.2 7E+02 0.015 23.9 10.3 17 169-185 24-40 (195)
319 KOG2660 Locus-specific chromos 22.2 13 0.00029 37.7 -2.4 47 310-357 14-64 (331)
320 PF14265 DUF4355: Domain of un 22.1 4.8E+02 0.01 22.0 9.6 19 165-183 11-29 (125)
321 PLN02436 cellulose synthase A 22.1 53 0.0011 38.4 1.9 44 311-354 36-89 (1094)
322 KOG0608 Warts/lats-like serine 22.1 4.3E+02 0.0093 30.2 8.6 100 107-221 522-627 (1034)
323 PF06818 Fez1: Fez1; InterPro 22.0 5.1E+02 0.011 24.8 8.2 61 166-227 132-201 (202)
324 PF14169 YdjO: Cold-inducible 21.9 62 0.0013 25.2 1.7 17 343-359 39-55 (59)
325 PF10224 DUF2205: Predicted co 21.9 4.5E+02 0.0098 21.5 9.0 32 202-233 36-67 (80)
326 KOG0971 Microtubule-associated 21.9 9.4E+02 0.02 28.5 11.3 20 221-240 1030-1049(1243)
327 PF14943 MRP-S26: Mitochondria 21.9 6.4E+02 0.014 23.3 11.3 66 177-242 72-138 (170)
328 PHA01750 hypothetical protein 21.8 3.6E+02 0.0078 21.8 6.0 25 165-189 34-58 (75)
329 PRK10803 tol-pal system protei 21.8 1.7E+02 0.0037 28.4 5.2 36 155-191 58-93 (263)
330 PRK14127 cell division protein 21.7 2E+02 0.0044 24.8 5.0 11 164-174 25-35 (109)
331 KOG1734 Predicted RING-contain 21.7 41 0.00089 33.7 0.9 45 310-354 223-281 (328)
332 KOG1029 Endocytic adaptor prot 21.6 1.3E+03 0.029 26.9 14.9 33 166-198 346-378 (1118)
333 KOG0250 DNA repair protein RAD 21.6 1.4E+03 0.031 27.2 15.6 45 203-247 394-438 (1074)
334 PRK14127 cell division protein 21.5 2.9E+02 0.0063 23.9 5.9 22 151-172 23-44 (109)
335 PF08599 Nbs1_C: DNA damage re 21.5 85 0.0018 24.9 2.4 25 213-238 29-53 (65)
336 PRK14153 heat shock protein Gr 21.3 3.4E+02 0.0073 25.7 6.8 35 155-191 24-58 (194)
337 PF04423 Rad50_zn_hook: Rad50 21.1 33 0.00072 25.2 0.1 10 345-354 22-31 (54)
338 PRK14147 heat shock protein Gr 21.0 2.8E+02 0.0061 25.5 6.2 28 163-191 16-43 (172)
339 PRK14154 heat shock protein Gr 20.9 2.7E+02 0.0059 26.6 6.2 25 166-191 53-77 (208)
340 PRK14151 heat shock protein Gr 20.9 3E+02 0.0064 25.5 6.3 15 174-188 28-42 (176)
341 KOG3068 mRNA splicing factor [ 20.7 2.8E+02 0.006 27.5 6.2 26 204-229 70-95 (268)
342 PRK11448 hsdR type I restricti 20.6 5.3E+02 0.011 30.6 9.5 6 254-259 240-245 (1123)
343 PRK11519 tyrosine kinase; Prov 20.5 1.2E+03 0.026 25.9 12.4 20 166-185 267-286 (719)
344 KOG4343 bZIP transcription fac 20.5 2.5E+02 0.0054 30.9 6.3 53 177-236 290-342 (655)
345 KOG4286 Dystrophin-like protei 20.4 1.3E+03 0.028 26.8 11.8 103 154-257 109-239 (966)
346 TIGR02680 conserved hypothetic 20.3 1.6E+03 0.034 27.2 15.0 8 161-168 233-240 (1353)
347 KOG0709 CREB/ATF family transc 20.3 2.3E+02 0.005 30.4 6.0 37 221-257 276-312 (472)
348 PF13118 DUF3972: Protein of u 20.3 4.1E+02 0.0089 23.7 6.7 47 203-256 78-124 (126)
349 TIGR01461 greB transcription e 20.3 4.2E+02 0.0091 23.8 7.0 19 211-229 53-71 (156)
350 PHA03155 hypothetical protein; 20.3 5.9E+02 0.013 22.4 7.5 29 148-184 5-33 (115)
351 PF02403 Seryl_tRNA_N: Seryl-t 20.2 4.9E+02 0.011 21.3 9.3 13 165-177 26-38 (108)
352 PRK14156 heat shock protein Gr 20.2 2.8E+02 0.0062 25.8 6.0 22 215-236 39-60 (177)
353 PF08926 DUF1908: Domain of un 20.1 3.6E+02 0.0078 27.1 7.0 27 150-176 154-182 (282)
354 PLN02320 seryl-tRNA synthetase 20.1 6.1E+02 0.013 27.5 9.2 14 250-263 156-169 (502)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-38 Score=289.76 Aligned_cols=189 Identities=49% Similarity=0.829 Sum_probs=158.4
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018028 155 DIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQ 234 (362)
Q Consensus 155 ~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~Q 234 (362)
++++++++|..|||+|+..|.++||..+.+.++++++.++.++|..+.++||+|++||++++++|++|+++++++.+|+|
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhc----CCCCCCCCCCCCCccCCccchhhhccCCCCCCCcccccCCccccccCCC
Q 018028 235 IWRDLAQTNEATANTLRSNLEQVLAHV----GGEGDDCAGGGATLAAAAEDDAESSCGSSDFGRSTIAGEGAQDKAVGGG 310 (362)
Q Consensus 235 aWq~~A~~nEA~A~~Lra~LeQ~l~q~----~~l~~~~eG~g~s~~~~~adDAeScc~~~~~~r~~l~geea~~~~~~~~ 310 (362)
.|+++|++||+++++|+.+|+|++.+. ....++..++|+. +.||++|+.+.. +.... ...
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~~~~~~~~~~~~~~g~~----~~~~~~s~~~~~----------~~~~~--~~~ 158 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCPASAPAEERGQKSCGDR----EADDGKSSYVDP----------SVDNF--KRM 158 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcccccCchhhhccccCcc----ccccccccccch----------hhhhh--hcc
Confidence 999999999999999999999999984 1111111112211 234444421111 11111 111
Q ss_pred ccccccccccccceEEeCCCCcccCcccccccCCcCccccccccceEEEee
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNL 361 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~~CPvCR~~i~~~V~V~l 361 (362)
+ .|+.|+++++.|+|+||+|+|+|..|+.. ...||+|+.+++.+++||+
T Consensus 159 ~-~Cr~C~~~~~~VlllPCrHl~lC~~C~~~-~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 159 R-SCRKCGEREATVLLLPCRHLCLCGICDES-LRICPICRSPKTSSVEVNF 207 (207)
T ss_pred c-cceecCcCCceEEeecccceEeccccccc-CccCCCCcChhhceeeccC
Confidence 2 29999999999999999999999999998 8899999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.1e-12 Score=125.81 Aligned_cols=51 Identities=33% Similarity=0.886 Sum_probs=47.2
Q ss_pred ccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccceEEEee
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVNL 361 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~V~l 361 (362)
...|+||++..+++++|||||+|+|..|+..+ ...||+||.+|...++|+.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 45899999999999999999999999999986 5779999999999999875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.86 E-value=6.1e-10 Score=81.12 Aligned_cols=44 Identities=39% Similarity=0.951 Sum_probs=38.9
Q ss_pred cccccccccccceEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 312 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
..|.+|+++..+++++||||+++|..|...+ ...||+||.+|+.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 3799999999999999999999999999985 4999999999975
No 4
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7.2e-10 Score=107.90 Aligned_cols=50 Identities=28% Similarity=0.743 Sum_probs=47.8
Q ss_pred ccccccccccccceEEeCCCCcccCcccccccCCcCccccccccceEEEee
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNL 361 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~~CPvCR~~i~~~V~V~l 361 (362)
...|+||++.+++.+||||||++.|..|+.. +..|||||..|...++||-
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-m~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-MNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-cccCchHHHHHHHHHhhhc
Confidence 6789999999999999999999999999999 8899999999999999984
No 5
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.6e-10 Score=87.55 Aligned_cols=51 Identities=31% Similarity=0.774 Sum_probs=45.7
Q ss_pred cccccccccccceEEeCCCCcccCccccccc----CCcCccccccccceEEEeeC
Q 018028 312 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDASLHVNLS 362 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~~V~V~lS 362 (362)
-+|.||++.+.+.+|.-|||+|+|.+|+.++ -..||+||++|.+.|+-|-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 3799999999999999999999999999875 57899999999998876643
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.2e-09 Score=104.78 Aligned_cols=51 Identities=31% Similarity=0.753 Sum_probs=47.5
Q ss_pred ccccccccccccceEEeCCCCcccCcccccccCCcCccccccccceEEEeeC
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 362 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~~CPvCR~~i~~~V~V~lS 362 (362)
...|.||.+++.+++|+||||+|+|..|... ...||+||..|...+.+|.|
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~-l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCCCTLCSKH-LPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCceEEecCCccceeeecCCcEEEchHHHhh-CCCCchhHHHHHHHHHHhcC
Confidence 3479999999999999999999999999999 88899999999999988864
No 7
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.45 E-value=2.9e-05 Score=79.06 Aligned_cols=54 Identities=33% Similarity=0.751 Sum_probs=45.4
Q ss_pred cCCCccccccccccccceEEeCCCCcccCccccccc-----CCcCccccccccceEEEee
Q 018028 307 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-----IGSCPVCNFVVDASLHVNL 361 (362)
Q Consensus 307 ~~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-----~~~CPvCR~~i~~~V~V~l 361 (362)
++..--.|+||-++..+|-+-||||+ +|..|-... ...||.||+.|.+.-.|.+
T Consensus 365 MgsTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 365 MGSTFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred ccchHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 34455589999999999999999999 899997655 5789999999999866643
No 8
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0015 Score=70.73 Aligned_cols=46 Identities=24% Similarity=0.619 Sum_probs=40.0
Q ss_pred CCccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 309 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 309 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
+....|.+|.+++.++++.-|+|+ +|..|-... ..+||.|..++..
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 345689999999999999999999 899997664 7999999998753
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.07 E-value=0.00016 Score=50.16 Aligned_cols=35 Identities=31% Similarity=0.809 Sum_probs=28.9
Q ss_pred cccccccccce-EEeCCCCcccCccccccc---CCcCccc
Q 018028 314 CRRCGEKESSV-LLLPCRHLCLCTVCGSCL---IGSCPVC 349 (362)
Q Consensus 314 C~iC~~~~a~v-lLlPCrHlclC~~C~~~l---~~~CPvC 349 (362)
|.||++...+. +++||||. .|.+|.... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999988888 79999999 899998765 6889987
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.96 E-value=0.00045 Score=66.36 Aligned_cols=47 Identities=28% Similarity=0.578 Sum_probs=36.3
Q ss_pred cccccccccccc--------eEEeCCCCcccCccccccc---CCcCccccccccceEEE
Q 018028 312 MLCRRCGEKESS--------VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHV 359 (362)
Q Consensus 312 ~~C~iC~~~~a~--------vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~V 359 (362)
..|.||++.-.. .++.||+|. .|..|-... ..+||+||.++...+..
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 479999985221 466789997 899997554 68999999998876654
No 11
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.94 E-value=0.00029 Score=50.19 Aligned_cols=37 Identities=35% Similarity=0.753 Sum_probs=30.1
Q ss_pred cccccccc---cceEEeCCCCcccCccccccc---CCcCccccc
Q 018028 314 CRRCGEKE---SSVLLLPCRHLCLCTVCGSCL---IGSCPVCNF 351 (362)
Q Consensus 314 C~iC~~~~---a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~ 351 (362)
|.+|++.- ...++++|+|. +|..|...+ ...||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 77777755 56889999999 899999883 249999984
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.86 E-value=0.00053 Score=64.04 Aligned_cols=44 Identities=27% Similarity=0.573 Sum_probs=37.1
Q ss_pred ccccccccccccceEEeCCCCcccCccccccc-------------------CCcCccccccccc
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-------------------IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-------------------~~~CPvCR~~i~~ 355 (362)
...|.||.+...+.++.||+|. .|..|.... ...||+||..++.
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3579999999999999999998 899997532 2479999999865
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.84 E-value=0.00035 Score=49.37 Aligned_cols=37 Identities=38% Similarity=0.782 Sum_probs=30.3
Q ss_pred cccccccc---ccceEEeCCCCcccCccccccc---CCcCcccc
Q 018028 313 LCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCN 350 (362)
Q Consensus 313 ~C~iC~~~---~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR 350 (362)
.|.||++. ...++.+||+|. .|..|.... ..+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 58899874 467889999998 899997776 78999997
No 14
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.71 E-value=0.00065 Score=44.30 Aligned_cols=35 Identities=34% Similarity=0.903 Sum_probs=30.1
Q ss_pred cccccccccceEEeCCCCcccCccccccc----CCcCccc
Q 018028 314 CRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVC 349 (362)
Q Consensus 314 C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvC 349 (362)
|.+|++.....+++||+|. .|..|.... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 899998642 4679987
No 15
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00071 Score=64.58 Aligned_cols=47 Identities=28% Similarity=0.553 Sum_probs=40.0
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc------CCcCccccccccceE
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL------IGSCPVCNFVVDASL 357 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l------~~~CPvCR~~i~~~V 357 (362)
....|-||++...+-|+-+|||| .|-.|--.. ...||||++.|+..-
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccce
Confidence 34579999999999999999999 899997654 678899999887643
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.61 E-value=0.0009 Score=45.22 Aligned_cols=40 Identities=35% Similarity=0.841 Sum_probs=30.6
Q ss_pred ccccccccc-cceEEeCCCCcccCccccccc----CCcCccccccc
Q 018028 313 LCRRCGEKE-SSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVV 353 (362)
Q Consensus 313 ~C~iC~~~~-a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i 353 (362)
.|.+|++.. ..+.+.||+|. .|..|.... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 488999887 45555569999 899998643 45799998753
No 17
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.45 E-value=0.0015 Score=49.80 Aligned_cols=43 Identities=30% Similarity=0.677 Sum_probs=36.7
Q ss_pred cccccccccccceEEeCCCCcccCccccccc-CCcCccccccccc
Q 018028 312 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-IGSCPVCNFVVDA 355 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-~~~CPvCR~~i~~ 355 (362)
-.|..|......-+++||+|+ +|..|...- ...||+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 368999999888899999999 799997654 7899999988753
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0011 Score=65.04 Aligned_cols=50 Identities=26% Similarity=0.519 Sum_probs=39.2
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccceEEEe
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVN 360 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~V~ 360 (362)
..+.|.+|.+...+--..||||+ .|-.|-... -..||+||....-+--|.
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceee
Confidence 44689999999999999999999 777775443 567999999876554443
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.17 E-value=0.0016 Score=45.04 Aligned_cols=35 Identities=37% Similarity=0.822 Sum_probs=29.8
Q ss_pred cccccccccceE-EeCCCCcccCccccccc-----CCcCccc
Q 018028 314 CRRCGEKESSVL-LLPCRHLCLCTVCGSCL-----IGSCPVC 349 (362)
Q Consensus 314 C~iC~~~~a~vl-LlPCrHlclC~~C~~~l-----~~~CPvC 349 (362)
|.||.+...... ++||+|. .|..|...+ ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999888877 9999999 899997664 5679987
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0018 Score=59.89 Aligned_cols=49 Identities=22% Similarity=0.526 Sum_probs=37.4
Q ss_pred cccccccccccceE--EeCCCCcccCccccccc---CCcCcccccccc--ceEEEee
Q 018028 312 MLCRRCGEKESSVL--LLPCRHLCLCTVCGSCL---IGSCPVCNFVVD--ASLHVNL 361 (362)
Q Consensus 312 ~~C~iC~~~~a~vl--LlPCrHlclC~~C~~~l---~~~CPvCR~~i~--~~V~V~l 361 (362)
..|.||++.-.-.+ ---|||+ +|..|.... ...||+|+..|+ .+..|||
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 57999998644444 3689999 899998876 789999996654 4566654
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.75 E-value=0.0034 Score=64.37 Aligned_cols=45 Identities=22% Similarity=0.567 Sum_probs=37.7
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
....|.||.+.-..-++.||+|. .|..|-... ...||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 45689999998888888999999 799997754 4579999998764
No 22
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.0063 Score=63.81 Aligned_cols=44 Identities=30% Similarity=0.607 Sum_probs=38.1
Q ss_pred ccccccccccccceEEeCCCCcccCccccccc--------CCcCccccccccc
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL--------IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l--------~~~CPvCR~~i~~ 355 (362)
...|+||++.+...+..-|||. .|-.|--.. ...||+|+..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6799999999999999999999 788884332 6899999999876
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=94.92 E-value=0.0064 Score=58.24 Aligned_cols=45 Identities=27% Similarity=0.558 Sum_probs=33.8
Q ss_pred Cccccccccccc---------cceEEeCCCCcccCccccccc---------CCcCccccccccc
Q 018028 310 GRMLCRRCGEKE---------SSVLLLPCRHLCLCTVCGSCL---------IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~---------a~vlLlPCrHlclC~~C~~~l---------~~~CPvCR~~i~~ 355 (362)
....|.||++.- .--+|.||+|. .|..|-... ...||+||..+..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 345899999852 23578899999 899996654 2349999998763
No 24
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.0058 Score=54.92 Aligned_cols=40 Identities=38% Similarity=0.734 Sum_probs=33.9
Q ss_pred ccccccccccccceEEeCCCCcccCcccccccC---CcCccccc
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLI---GSCPVCNF 351 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~---~~CPvCR~ 351 (362)
...|.||.+.-..-.++||+|. .|..|...+. -.||.||.
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 3589999998777799999999 8999988753 69999993
No 25
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.67 E-value=0.014 Score=59.14 Aligned_cols=46 Identities=28% Similarity=0.705 Sum_probs=39.8
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc-----CCcCccccccccce
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-----IGSCPVCNFVVDAS 356 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-----~~~CPvCR~~i~~~ 356 (362)
+.+.|.||-+.-.-+.++||+|. +|-.|+-++ ...||+||..-...
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceE
Confidence 45689999999999999999999 899999886 68999999875443
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=94.64 E-value=0.013 Score=41.73 Aligned_cols=35 Identities=37% Similarity=0.753 Sum_probs=25.7
Q ss_pred cccccccccceEEeCCCCcccCccccccc-----C--CcCccc
Q 018028 314 CRRCGEKESSVLLLPCRHLCLCTVCGSCL-----I--GSCPVC 349 (362)
Q Consensus 314 C~iC~~~~a~vlLlPCrHlclC~~C~~~l-----~--~~CPvC 349 (362)
|.||.+--.+=+.++|||. .|..|-... . -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7899998888899999999 899997765 1 368887
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.011 Score=57.59 Aligned_cols=44 Identities=30% Similarity=0.572 Sum_probs=36.1
Q ss_pred CccccccccccccceEEeCCCCcccCcccccc-c----CCcCcccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSC-L----IGSCPVCNFVVD 354 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~-l----~~~CPvCR~~i~ 354 (362)
..+.|.+|.+.+-+-.-.||||+ .|-.|--. + ...||+||+...
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 45689999999999999999999 67777544 2 678999998653
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.49 E-value=0.018 Score=42.72 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=35.2
Q ss_pred cccccccccccceEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 312 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
..|.+|++--.+=++.||||. .|..|-... ...||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 369999988777788999988 799997764 5689999998743
No 29
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.025 Score=56.48 Aligned_cols=43 Identities=26% Similarity=0.624 Sum_probs=33.5
Q ss_pred cccccccccc---ccceEEeCCCCcccCccccccc----CCcCcccccccc
Q 018028 311 RMLCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVD 354 (362)
Q Consensus 311 ~~~C~iC~~~---~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~ 354 (362)
.-.|.||++. .-.++++||.|. .=..|-.+. ..+||+||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 3589999973 334888999998 567776654 689999999875
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=93.74 E-value=0.018 Score=41.57 Aligned_cols=27 Identities=41% Similarity=0.912 Sum_probs=16.5
Q ss_pred cccccccccc----eEEeCCCCcccCccccccc
Q 018028 314 CRRCGEKESS----VLLLPCRHLCLCTVCGSCL 342 (362)
Q Consensus 314 C~iC~~~~a~----vlLlPCrHlclC~~C~~~l 342 (362)
|.||.+ ..+ -++|||||. +|..|-..+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 788888 555 577899999 899998775
No 31
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.024 Score=57.55 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=36.4
Q ss_pred CCccccccccccccceEEeCCCCcccCccccccc---CCcCcccccccc
Q 018028 309 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVD 354 (362)
Q Consensus 309 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~ 354 (362)
.....|+||+.++.+.+|-||+|. .|..|-..- ...|=.|...+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceee
Confidence 345689999999999999999999 699997654 566777766654
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=93.04 E-value=0.031 Score=55.54 Aligned_cols=42 Identities=29% Similarity=0.532 Sum_probs=36.7
Q ss_pred cccccccccccceEEeCCCCcccCccccccc---CCcCcccccccc
Q 018028 312 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVD 354 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~ 354 (362)
..|.||...-.--++-||+|. +|.-|-... ...||+||....
T Consensus 26 lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence 479999999999999999999 899997764 799999998654
No 33
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.043 Score=56.15 Aligned_cols=42 Identities=29% Similarity=0.672 Sum_probs=28.9
Q ss_pred Ccccccccccc-------------ccceEEeCCCCc----ccCcccccccCCcCccccccc
Q 018028 310 GRMLCRRCGEK-------------ESSVLLLPCRHL----CLCTVCGSCLIGSCPVCNFVV 353 (362)
Q Consensus 310 ~~~~C~iC~~~-------------~a~vlLlPCrHl----clC~~C~~~l~~~CPvCR~~i 353 (362)
+++.|.||++. .+.--=+||||. |+=.+|+. ..+||+||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER--qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER--QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh--ccCCCcccCcc
Confidence 45578888886 111134799997 44455554 68999999984
No 34
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.054 Score=57.31 Aligned_cols=42 Identities=33% Similarity=0.638 Sum_probs=36.0
Q ss_pred cccccccccccc-----eEEeCCCCcccCccccccc---CCcCcccccccc
Q 018028 312 MLCRRCGEKESS-----VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVD 354 (362)
Q Consensus 312 ~~C~iC~~~~a~-----vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~ 354 (362)
..|.||.+.-.. ...+||+|. .+..|-.+. ..+||+||..+.
T Consensus 292 ~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 292 ELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred Ceeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence 479999998777 799999999 799997776 799999999443
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=90.86 E-value=0.053 Score=54.94 Aligned_cols=45 Identities=29% Similarity=0.662 Sum_probs=38.7
Q ss_pred ccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccce
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDAS 356 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~ 356 (362)
...|-||++--.--++.||+|. .|.-|-... ...||.|+.+++.+
T Consensus 23 lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 4579999999888999999999 799997764 68999999988754
No 36
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=89.41 E-value=0.14 Score=40.35 Aligned_cols=28 Identities=29% Similarity=0.733 Sum_probs=20.2
Q ss_pred cceEEeCCCCcccCccccccc---CCcCcccc
Q 018028 322 SSVLLLPCRHLCLCTVCGSCL---IGSCPVCN 350 (362)
Q Consensus 322 a~vlLlPCrHlclC~~C~~~l---~~~CPvCR 350 (362)
..+++.+|+|. .-..|-... ..+||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 55677899999 677776543 68999997
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=0.23 Score=50.37 Aligned_cols=43 Identities=30% Similarity=0.583 Sum_probs=30.1
Q ss_pred ccccccc---cccceEEeCCCCcccCccccccc----CCcCccccccccce
Q 018028 313 LCRRCGE---KESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDAS 356 (362)
Q Consensus 313 ~C~iC~~---~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~~ 356 (362)
.|.||.+ ..-.+.+|||.|---| .|-... -..||+|+..+...
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCCC
Confidence 7999987 3445667999999433 454433 35699999977643
No 38
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.83 E-value=18 Score=33.87 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=60.4
Q ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HH
Q 018028 158 FRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVK--------SL 229 (362)
Q Consensus 158 ~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlr--------ql 229 (362)
..++....|+.++|..|.+.+|.-=+..|+-+-. +..+.++||++|.||.++...+..|+.-+. .|
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~------~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL 123 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQ------ERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL 123 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 3456667788888999999888776666654332 445568899999999998777665554222 22
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 018028 230 FVENQIWRDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 230 ~~E~QaWq~~A~~nEA~A~~Lra~LeQ~ 257 (362)
...-..-......++..+..|..+++-.
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334445556666666666665543
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.91 E-value=31 Score=33.39 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=67.2
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----Hh
Q 018028 159 RLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQ--EGVANKLKEKDEEIHRMRKLNWVLQERVKSLF----VE 232 (362)
Q Consensus 159 ~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE--~~~~~rLReKEeEIera~rrn~ELEErlrql~----~E 232 (362)
.+++-+.|++...+.+.+.++........... .+=+ ...-..+.....||+.+..+|..||.++..+. .+
T Consensus 181 ~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~----~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~ 256 (312)
T PF00038_consen 181 IAQKNREELEEWYQSKLEELRQQSEKSSEELE----SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE 256 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhcccccccccccccccccccc----hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH
Confidence 45566678888888888777776655332222 1111 12334577788899999999999999998664 56
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 233 NQIWRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 233 ~QaWq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
.+.|+.....-|+....|+..+++.+.
T Consensus 257 ~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 257 REEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 667888777777777777777766554
No 40
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.73 E-value=0.21 Score=51.72 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=35.0
Q ss_pred CCCcccccccccccc---ceEEeCCCCcccCccccccc-----------CCcCcccccccc
Q 018028 308 GGGRMLCRRCGEKES---SVLLLPCRHLCLCTVCGSCL-----------IGSCPVCNFVVD 354 (362)
Q Consensus 308 ~~~~~~C~iC~~~~a---~vlLlPCrHlclC~~C~~~l-----------~~~CPvCR~~i~ 354 (362)
..+...|.||++..+ ++.++||+|. .|+.|.... .-.||-|..+..
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV 240 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence 345668999999654 5999999999 899996543 567887766543
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.51 E-value=24 Score=39.13 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=39.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
|.|+.|.||.++++.....||+++.++.|.+.-+..-++++.-+-.|-+.|.-+..
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 56777788888888889999999888888877666534444444445555544433
No 42
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.18 E-value=0.33 Score=48.33 Aligned_cols=44 Identities=25% Similarity=0.678 Sum_probs=34.1
Q ss_pred CccccccccccccceEEeCC--CCcccCcccccccCCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPC--RHLCLCTVCGSCLIGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPC--rHlclC~~C~~~l~~~CPvCR~~i~~ 355 (362)
+-..|++|++.-.-=++ -| ||+ +|..|..++...||.||-+++.
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 34579999986443333 45 799 7999996669999999999983
No 43
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=86.04 E-value=0.55 Score=47.36 Aligned_cols=52 Identities=10% Similarity=-0.054 Sum_probs=44.4
Q ss_pred CCccccccccccccceEEeCCCCcccCccccccc-CCcCccccccccceEEEe
Q 018028 309 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-IGSCPVCNFVVDASLHVN 360 (362)
Q Consensus 309 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-~~~CPvCR~~i~~~V~V~ 360 (362)
...+.|-+|...-.+.++.||+|--.|.+|+..- ..+||+|....-..|.|+
T Consensus 341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i~ 393 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPIN 393 (394)
T ss_pred hhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeecC
Confidence 3567899999999999999999999999998742 689999998777766653
No 44
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=85.17 E-value=23 Score=33.79 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=58.0
Q ss_pred HHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHh---------------hhHHHHHHHHHHHHHHHHHHHH
Q 018028 167 IDRYIAQHTEKVI---LELEEQRKRQSRMLISAIQEGVANKLK---------------EKDEEIHRMRKLNWVLQERVKS 228 (362)
Q Consensus 167 ID~~i~~q~ErLR---~~LeE~RqRh~r~Ll~avE~~~~~rLR---------------eKEeEIera~rrn~ELEErlrq 228 (362)
=.++|.+++|-.+ ++|+|---||... .|+..+++.|.+ .-++||-.+++|+.++|-||+.
T Consensus 70 EErILaLEad~~kWEqkYLEEs~mrq~a~--dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~ 147 (205)
T PF12240_consen 70 EERILALEADMTKWEQKYLEESAMRQFAM--DAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKA 147 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHH
Confidence 3588999988776 5789988888763 555666666665 3368999999999999999999
Q ss_pred HHHhhHHHHHHHhhhhHHHHHHH
Q 018028 229 LFVENQIWRDLAQTNEATANTLR 251 (362)
Q Consensus 229 l~~E~QaWq~~A~~nEA~A~~Lr 251 (362)
|.+ .-.+.+||+..|+
T Consensus 148 Lha-------qI~EKDAmIkVLQ 163 (205)
T PF12240_consen 148 LHA-------QIAEKDAMIKVLQ 163 (205)
T ss_pred HHH-------HHHHHHHHHHHHH
Confidence 964 3346788886665
No 45
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.59 E-value=0.6 Score=46.22 Aligned_cols=45 Identities=27% Similarity=0.613 Sum_probs=34.7
Q ss_pred CCccccccccccccc-eEEeCCCCcccCccccccc-----CCcCcccccccc
Q 018028 309 GGRMLCRRCGEKESS-VLLLPCRHLCLCTVCGSCL-----IGSCPVCNFVVD 354 (362)
Q Consensus 309 ~~~~~C~iC~~~~a~-vlLlPCrHlclC~~C~~~l-----~~~CPvCR~~i~ 354 (362)
+...+|++|++.+.. .+..||+|. .|..|..+- .-.||.|..+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 455689999998765 455679997 799997764 248999988765
No 46
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.51 E-value=31 Score=36.58 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=67.4
Q ss_pred HHHHHHhhhH----HHHHHHHHhHHHHHHHH----HHHHH-HHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018028 156 IIFRLQQQQS----EIDRYIAQHTEKVILEL----EEQRK-RQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERV 226 (362)
Q Consensus 156 l~~~l~qQ~~----EID~~i~~q~ErLR~~L----eE~Rq-Rh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErl 226 (362)
+.++++-|+. .+-.+.+.|.+.+|..+ +|.+. .+-...+.+.+..+-+||.+-+.-+.+..++..+++|-=
T Consensus 326 l~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 326 LTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREEN 405 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455665554 34444455666666554 45555 677788889999999999999999999999999999888
Q ss_pred HHHHHhhHHHHHHHhhhhH
Q 018028 227 KSLFVENQIWRDLAQTNEA 245 (362)
Q Consensus 227 rql~~E~QaWq~~A~~nEA 245 (362)
+.|...-+.|+..+++-+.
T Consensus 406 ~~l~knq~vw~~kl~~~~e 424 (493)
T KOG0804|consen 406 KKLIKNQDVWRGKLKELEE 424 (493)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 8888888999998866555
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.97 E-value=0.44 Score=48.36 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=37.0
Q ss_pred CCccccccccccccceE-----E---eCCCCcccCccccccc----------CCcCccccccccce
Q 018028 309 GGRMLCRRCGEKESSVL-----L---LPCRHLCLCTVCGSCL----------IGSCPVCNFVVDAS 356 (362)
Q Consensus 309 ~~~~~C~iC~~~~a~vl-----L---lPCrHlclC~~C~~~l----------~~~CPvCR~~i~~~ 356 (362)
.....|-||++.-.... | .+|.|. +|..|.... ...||.||......
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 34568999999877666 5 779999 899997654 48899999887654
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=83.18 E-value=0.8 Score=36.19 Aligned_cols=42 Identities=29% Similarity=0.602 Sum_probs=21.3
Q ss_pred ccccccccccccc-eEEeCCCCcccCccccccc-CCcCccccccc
Q 018028 311 RMLCRRCGEKESS-VLLLPCRHLCLCTVCGSCL-IGSCPVCNFVV 353 (362)
Q Consensus 311 ~~~C~iC~~~~a~-vlLlPCrHlclC~~C~~~l-~~~CPvCR~~i 353 (362)
...|.+|.+--.. |.+--|-|. +|..|...- ...||+|+.+-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 3579999986444 457789999 899998763 47899999875
No 49
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.15 E-value=10 Score=37.44 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=38.3
Q ss_pred CCcccccccccc----ccceEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 309 GGRMLCRRCGEK----ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 309 ~~~~~C~iC~~~----~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
..+..|.+|.+. ..+++|-||+|. +|.+|..++ -..||+|-.+...
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 356789999983 567899999999 799999886 6899999887654
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.10 E-value=0.57 Score=48.42 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=36.0
Q ss_pred CCccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 309 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 309 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
.....|.||+..--.-+..||||. .|..|-.+. ...||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 456789999987666666799999 799982221 7899999998764
No 51
>PRK09039 hypothetical protein; Validated
Probab=81.09 E-value=65 Score=32.57 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 018028 208 KDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 260 (362)
Q Consensus 208 KEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q 260 (362)
+..+|.+++.+...|++++.++..+-.+=+..-++.+.....|...|+.++++
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666777777777777777777776666677777888888888888865
No 52
>PF04641 Rtf2: Rtf2 RING-finger
Probab=80.68 E-value=1 Score=43.45 Aligned_cols=47 Identities=30% Similarity=0.567 Sum_probs=35.7
Q ss_pred CCccccccccc----cccceEEeCCCCcccCccccccc--CCcCccccccccce
Q 018028 309 GGRMLCRRCGE----KESSVLLLPCRHLCLCTVCGSCL--IGSCPVCNFVVDAS 356 (362)
Q Consensus 309 ~~~~~C~iC~~----~~a~vlLlPCrHlclC~~C~~~l--~~~CPvCR~~i~~~ 356 (362)
.....|+|.+. ...-|+|.||||. ++..+...+ ...||+|..+++..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 35568999875 4568999999997 677777773 24899999997643
No 53
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.50 E-value=0.65 Score=46.31 Aligned_cols=46 Identities=26% Similarity=0.508 Sum_probs=39.7
Q ss_pred ccccccccccceEEeCCCCcccCccccccc---CCcCccccccccceEEE
Q 018028 313 LCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHV 359 (362)
Q Consensus 313 ~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~V 359 (362)
.|-||+.--.+=|+--|+|. +|..|+..- ...|++|...+.++..+
T Consensus 243 ~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred cccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 59999998888888899999 799998875 58999999999887643
No 54
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=79.05 E-value=0.62 Score=48.11 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=0.0
Q ss_pred cccceEEeCCCCccc----Cccccccc-------CCcCccccccccc---eEEEee
Q 018028 320 KESSVLLLPCRHLCL----CTVCGSCL-------IGSCPVCNFVVDA---SLHVNL 361 (362)
Q Consensus 320 ~~a~vlLlPCrHlcl----C~~C~~~l-------~~~CPvCR~~i~~---~V~V~l 361 (362)
.+...+|-||||+|. =.++...+ ...||.|-.++.+ .|+.+|
T Consensus 356 ~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 356 GPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------------
T ss_pred CCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence 445678899999963 12222222 4799999999875 566654
No 55
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=78.74 E-value=69 Score=32.41 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=42.3
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 156 IIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 156 l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
..++|.+.+.|+.-+|+.+..+|-..++ ++=+.||.+|+... +.+-+.+..+.+-|+.-|.++.+
T Consensus 25 av~qL~~~r~~teelIr~rVrq~V~hVq----aqEreLLe~v~~rY-------qR~y~ema~~L~~LeavLqRir~ 89 (324)
T PF12126_consen 25 AVSQLGRARADTEELIRARVRQVVAHVQ----AQERELLEAVEARY-------QRDYEEMAGQLGRLEAVLQRIRT 89 (324)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHh
Confidence 4678999999999999999888766554 44588888888432 22333344444455554444443
No 56
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.50 E-value=51 Score=34.73 Aligned_cols=70 Identities=29% Similarity=0.295 Sum_probs=42.4
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018028 159 RLQQQQSEIDRYIAQHTEKVILELEEQRKRQS-----RMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 159 ~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~-----r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E 232 (362)
++++|..|.|+=+ ++++..|++.=+++. +.++.+.-+++-.+|.+||.||.++...|-+|.|+.-+..++
T Consensus 3 ~~~s~~s~~dqr~----~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 3 PLYSQKSENDQRL----IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred hhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666533 233333333333222 234455556677789999999999999999887755454433
No 57
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=75.68 E-value=3.7 Score=31.89 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLA 240 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A 240 (362)
+|++-++.+.++|+++..++..||...+..|
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3999999999999999999999998776553
No 58
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=74.70 E-value=31 Score=29.73 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELEEQRK---RQSRMLISAIQEGVANKLKEKD----EEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~Rq---Rh~r~Ll~avE~~~~~rLReKE----eEIera~rrn~ELEErlrql~ 230 (362)
.-+|.++..-.|.++..+++.+. .+...+=.++++.+.+-|..-+ +||+.+..|..+|+.++++|.
T Consensus 44 ~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 44 KRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555543 3334455566666655555544 799999999999999998875
No 59
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=74.31 E-value=77 Score=30.82 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 163 QQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 163 Q~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
=..|||+-|... +.++..+....++.....++.+.+.++..+...+.++++++.++..
T Consensus 106 F~~eI~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 106 FEKEIDQKLDEI-----------RQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666555443 3334444444444455555666666666666666666666666553
No 60
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=74.20 E-value=70 Score=30.33 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=42.8
Q ss_pred chHHH-HHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 152 LDQDI-IFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQ-SRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 152 l~~~l-~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh-~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql 229 (362)
-+.|| ..+|+-|+.-+|+.|..+-+|...-=.|...++ -++-+..-...+.+-.++.+.|-..+..+..+|+.+|++|
T Consensus 101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556 457888888888888776555443333322221 1222333333333334555555555566666666666665
Q ss_pred HH
Q 018028 230 FV 231 (362)
Q Consensus 230 ~~ 231 (362)
..
T Consensus 181 q~ 182 (192)
T PF11180_consen 181 QR 182 (192)
T ss_pred HH
Confidence 43
No 61
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.90 E-value=20 Score=38.36 Aligned_cols=70 Identities=30% Similarity=0.391 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 189 QSRMLISAIQEGVANKLKEKD-----EEIHRMRKLNWVLQERVKSLF--VENQIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 189 h~r~Ll~avE~~~~~rLReKE-----eEIera~rrn~ELEErlrql~--~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
+.|.-+.++++.+. +|. |+ .-|+++++|+++|++|+-++. .|..--+..|..-++. .||..|+-++++.
T Consensus 352 ~~r~ri~~i~e~v~-eLq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE--~Lr~Kldtll~~l 427 (508)
T KOG3091|consen 352 QHRIRINAIGERVT-ELQ-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEE--ELRAKLDTLLAQL 427 (508)
T ss_pred HHHHHHHHHHHHHH-HHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHH--HHHHHHHHHHHHh
Confidence 44445666665543 333 33 678999999999999998876 4444444444333331 2666666666655
Q ss_pred C
Q 018028 262 G 262 (362)
Q Consensus 262 ~ 262 (362)
.
T Consensus 428 n 428 (508)
T KOG3091|consen 428 N 428 (508)
T ss_pred c
Confidence 3
No 62
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=73.54 E-value=79 Score=31.21 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=40.7
Q ss_pred hhhHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHH
Q 018028 162 QQQSEID---RYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEK-------DEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 162 qQ~~EID---~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReK-------EeEIera~rrn~ELEErlrql~~ 231 (362)
+|++|+| .+++...+.|-..+.++.+.=..+++..+-...-..|+++ ..||.+-+.-+.+|++.+.+|.+
T Consensus 135 ~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 135 SQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 4445555555555555544444433333332222222221 24666666667777777777777
Q ss_pred hhHHHHHHHh
Q 018028 232 ENQIWRDLAQ 241 (362)
Q Consensus 232 E~QaWq~~A~ 241 (362)
|.+.-+..+.
T Consensus 215 eV~~L~~~~~ 224 (258)
T PF15397_consen 215 EVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHhhc
Confidence 7666655544
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=73.14 E-value=1.5e+02 Score=32.39 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=44.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHH
Q 018028 172 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATA 247 (362)
Q Consensus 172 ~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A 247 (362)
+.++++|...|+..++. +..|....+ .+.........|.+.+..++.++.+|++++..+...+....++++...
T Consensus 170 ~~~v~~l~~eL~~~~ee-~e~L~~~~k-el~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~ 243 (546)
T PF07888_consen 170 REEVERLEAELEQEEEE-MEQLKQQQK-ELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKEL 243 (546)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556555543 333333333 222334445567778888888888888888888887777766665433
No 64
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.05 E-value=0.69 Score=51.43 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=33.5
Q ss_pred cccccccccccceEE---eCCCCcccCccccccc---CCcCccccccccceEE
Q 018028 312 MLCRRCGEKESSVLL---LPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLH 358 (362)
Q Consensus 312 ~~C~iC~~~~a~vlL---lPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~ 358 (362)
..|.+|...-.+-+. .+|.|. +|..|...+ ..+||+||..+...+.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 356666654443333 589999 899998776 8999999998766553
No 65
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=73.00 E-value=68 Score=33.42 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=31.4
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhHH----------HHHHHHHHHHHHHHH
Q 018028 152 LDQDIIFRLQQQQSEIDRYIAQHTE----------KVILELEEQRKRQSR 191 (362)
Q Consensus 152 l~~~l~~~l~qQ~~EID~~i~~q~E----------rLR~~LeE~RqRh~r 191 (362)
-|||+.++|++.+..+-+-|..+.+ +|-+.|+|-|+||-.
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999888887777776654 566788999999854
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.95 E-value=26 Score=33.21 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=19.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQI 235 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~Qa 235 (362)
.++.+.+.++..+..+|.+|.+.+..+..|.+.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666777776666666555443
No 67
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=72.91 E-value=34 Score=38.54 Aligned_cols=58 Identities=26% Similarity=0.469 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHh--HHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 174 HTEKVILELEEQRK--RQSRMLISAIQEG--VAN-KLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 174 q~ErLR~~LeE~Rq--Rh~r~Ll~avE~~--~~~-rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
+++|++..++|+-. .+++-=|.++|.. +.. -||++|+||+|++..+.-|+..+.++-.
T Consensus 495 e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 495 ETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666665532 1222223333322 222 2899999999999999999998888764
No 68
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=72.71 E-value=32 Score=30.17 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=31.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNL 254 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~L 254 (362)
.+++.++.|+++....+..|++++..+..|...++..-+.-+.....+...+
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777766666666665544444443333333
No 69
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=72.67 E-value=22 Score=34.91 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=14.1
Q ss_pred chHHHHHHHHhhhHHHHHH
Q 018028 152 LDQDIIFRLQQQQSEIDRY 170 (362)
Q Consensus 152 l~~~l~~~l~qQ~~EID~~ 170 (362)
.||.+..+|++--.|+|.+
T Consensus 158 ~Gd~l~~eLqkr~~~v~~l 176 (289)
T COG4985 158 DGDPLERELQKRLLEVETL 176 (289)
T ss_pred cCcHHHHHHHHHHHHHHHH
Confidence 3788888888877777654
No 70
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=72.39 E-value=15 Score=31.49 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=28.9
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 200 GVANKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 200 ~~~~rLReKEeEIera~rrn~ELEErlrql~~E~ 233 (362)
....++++...+++++..++.++++.++.+..|+
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4447788888999999999999999999998775
No 71
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=71.97 E-value=41 Score=26.80 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=26.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018028 202 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVL 258 (362)
Q Consensus 202 ~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l 258 (362)
.++|+|||+.|+.+......|...--+...-.---+...+++|..+..|+..++.+-
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777776665444444333222222222223333444455555554444433
No 72
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=71.80 E-value=38 Score=36.06 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018028 156 IIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQ 189 (362)
Q Consensus 156 l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh 189 (362)
|.+++++-+.|++.+++ |+++|+.+-++.|+|.
T Consensus 64 lva~~k~~r~~~~~l~~-~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 64 LVAEVKELRKRLAKLIS-ENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 67788888889888764 6777777777766654
No 73
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=71.46 E-value=1.4e+02 Score=34.34 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
.-|..+.+.|.+|.+.+.++.-+.+-|-.+.++..-+...|+.+|.-++.
T Consensus 459 ~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~ 508 (980)
T KOG0980|consen 459 QSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLI 508 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999999999999999888887777777776654433
No 74
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.02 E-value=32 Score=27.94 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018028 211 EIHRMRKLNWVLQERVKSLFVENQIWRDLA 240 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~~E~QaWq~~A 240 (362)
|...+....-.|+-+-.|+..|-+.||.+-
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556667777788888999998773
No 75
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=70.79 E-value=2.1 Score=33.50 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=31.3
Q ss_pred ccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
...|.+|++=-.+=+++||||. .+..|-... ...||+|+.+++.
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 4579999999999999999976 677775543 5789999988775
No 76
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.78 E-value=52 Score=33.02 Aligned_cols=28 Identities=32% Similarity=0.144 Sum_probs=17.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
+|++-+.||+..+++..++++++..+..
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~ 239 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELES 239 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666667766677666666643
No 77
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=70.28 E-value=2.5 Score=41.19 Aligned_cols=48 Identities=27% Similarity=0.496 Sum_probs=25.9
Q ss_pred cccccccccccceEEeCC-----CCcccCccccccc---CCcCccccccccceEEEe
Q 018028 312 MLCRRCGEKESSVLLLPC-----RHLCLCTVCGSCL---IGSCPVCNFVVDASLHVN 360 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPC-----rHlclC~~C~~~l---~~~CPvCR~~i~~~V~V~ 360 (362)
..|+||++.+.-.++.+= ||+ .|.-|.... -..||.|.......++.+
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 379999999888877764 445 699998765 678999999888877665
No 78
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=69.86 E-value=62 Score=26.72 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNL 254 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~L 254 (362)
.+.++||+++...-..|.+.+.+..+.+..|... |..+...|.+..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~---~~Evs~rL~~a~ 80 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEA---NREVSRRLDSAI 80 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4567899999999999999999999999999887 444444444433
No 79
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.71 E-value=1 Score=47.86 Aligned_cols=46 Identities=24% Similarity=0.510 Sum_probs=30.9
Q ss_pred CCcccccccccc-----------------ccceEEeCCCCcccCcccccccC----CcCccccccccc
Q 018028 309 GGRMLCRRCGEK-----------------ESSVLLLPCRHLCLCTVCGSCLI----GSCPVCNFVVDA 355 (362)
Q Consensus 309 ~~~~~C~iC~~~-----------------~a~vlLlPCrHlclC~~C~~~l~----~~CPvCR~~i~~ 355 (362)
+....|+||+.. .++-+|-||.|+ .=..|-...+ -.||+||+++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 345579999971 224556699998 4555644432 389999998764
No 80
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=68.94 E-value=1.1 Score=42.72 Aligned_cols=47 Identities=26% Similarity=0.586 Sum_probs=39.9
Q ss_pred cccccccccccceEEeCCCCcccCccccccc---CCcCccccccccceEEE
Q 018028 312 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHV 359 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~V 359 (362)
..|-||...-.+-++--|||. .|..|+..- -..|-+|.....+..-|
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 379999998888888899999 899998764 68999999888777654
No 81
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.62 E-value=1e+02 Score=31.94 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHHHHHH
Q 018028 157 IFRLQQQQSEIDRYIAQHTEKVILELEEQR 186 (362)
Q Consensus 157 ~~~l~qQ~~EID~~i~~q~ErLR~~LeE~R 186 (362)
..-++.++.|.++ ++.|+++|...|-..|
T Consensus 91 ~es~~e~q~e~~q-L~~qnqkL~nqL~~~~ 119 (401)
T PF06785_consen 91 RESVEERQQESEQ-LQSQNQKLKNQLFHVR 119 (401)
T ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence 4456677777776 4778888877776544
No 82
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=68.45 E-value=1.6 Score=48.02 Aligned_cols=41 Identities=27% Similarity=0.669 Sum_probs=34.7
Q ss_pred cccccccccccceEEeCCCCcccCccccccc-----CCcCcccccccc
Q 018028 312 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-----IGSCPVCNFVVD 354 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l-----~~~CPvCR~~i~ 354 (362)
..|.+|.+ ..+.++.+|+|. .|.+|-... ...||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 68999999 888899999999 899997664 347999998765
No 83
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=68.16 E-value=1.9 Score=43.60 Aligned_cols=40 Identities=30% Similarity=0.888 Sum_probs=28.2
Q ss_pred ccccccccccceE--EeCCCCcccCccccccc-CCcCcccccccc
Q 018028 313 LCRRCGEKESSVL--LLPCRHLCLCTVCGSCL-IGSCPVCNFVVD 354 (362)
Q Consensus 313 ~C~iC~~~~a~vl--LlPCrHlclC~~C~~~l-~~~CPvCR~~i~ 354 (362)
.|.-|.- +.-|+ ++||.|. +|.+|+..- .+.||.|--.|.
T Consensus 92 fCd~Cd~-PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDF-PIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCC-cceeeecccccchh-hhhhhhhcCccccCcCcccHHH
Confidence 5666743 33332 5899998 899999872 349999976553
No 84
>PRK11637 AmiB activator; Provisional
Probab=68.08 E-value=1.2e+02 Score=31.12 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhHHHHHH
Q 018028 154 QDIIFRLQQQQSEIDRY 170 (362)
Q Consensus 154 ~~l~~~l~qQ~~EID~~ 170 (362)
+++..++++.+.+|+..
T Consensus 43 ~~~~~~l~~l~~qi~~~ 59 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAK 59 (428)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 44555555555555443
No 85
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.95 E-value=51 Score=36.28 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=14.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql 229 (362)
+.++++|.+|++++++..+=..++.+|
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665555544444444
No 86
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=67.09 E-value=91 Score=36.99 Aligned_cols=90 Identities=24% Similarity=0.339 Sum_probs=53.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 018028 165 SEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNE 244 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nE 244 (362)
.|+|.=+....++++....+.++ .-++|+--=-..+..++.+.++++..+.+++.++++.++-+...++. +.-..
T Consensus 464 ~~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~----~~~~~ 538 (1317)
T KOG0612|consen 464 EEMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN----AADSL 538 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 35666666667777777777665 22333322223344567777777777777777777777666444433 23334
Q ss_pred HHHHHHHHHHHHHHH
Q 018028 245 ATANTLRSNLEQVLA 259 (362)
Q Consensus 245 A~A~~Lra~LeQ~l~ 259 (362)
..++.|+.+|++...
T Consensus 539 ~kv~~~rk~le~~~~ 553 (1317)
T KOG0612|consen 539 EKVNSLRKQLEEAEL 553 (1317)
T ss_pred hhHHHHHHHHHHhhh
Confidence 456677777776544
No 87
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=67.02 E-value=52 Score=28.27 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=37.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 171 IAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 171 i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~ 233 (362)
||.|+.-|+.++-|-+..... |-.-+... -..||..+.|++.+.-+|..|+-|+..|..|-
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~-L~e~Lk~k-e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAE-LKEQLKEK-EQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777655544331 21111111 13366667788888889999998887775443
No 88
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=66.82 E-value=3.2 Score=42.10 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=41.0
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccceEEE
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDASLHV 359 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~~V~V 359 (362)
....|..|+.+..-+.+.||+|-+.|..|.... ...||+|.........+
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 345799999999999999999999999986664 57799998877655543
No 89
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=64.57 E-value=2e+02 Score=32.44 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=41.3
Q ss_pred HHHhhhHHHHHH------HHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHH
Q 018028 159 RLQQQQSEIDRY------IAQHTEKVILEL----------EEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVL 222 (362)
Q Consensus 159 ~l~qQ~~EID~~------i~~q~ErLR~~L----------eE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~EL 222 (362)
.|..|-.|+|++ -+.+.|.||..| +|..||....+=..=+..+...-.+-.+++..++.+..+|
T Consensus 95 rLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~L 174 (739)
T PF07111_consen 95 RLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEEL 174 (739)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889988 566677776433 2222232222222222222222334457778888888888
Q ss_pred HHHHHHHHH
Q 018028 223 QERVKSLFV 231 (362)
Q Consensus 223 EErlrql~~ 231 (362)
++++..+..
T Consensus 175 e~~L~~le~ 183 (739)
T PF07111_consen 175 EKSLESLET 183 (739)
T ss_pred HHHHHHHHH
Confidence 888876654
No 90
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=64.54 E-value=1.4e+02 Score=28.87 Aligned_cols=88 Identities=15% Similarity=0.262 Sum_probs=56.7
Q ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------hhhHHHHHHHHHHHHHH-----HHH
Q 018028 157 IFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKL------KEKDEEIHRMRKLNWVL-----QER 225 (362)
Q Consensus 157 ~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rL------ReKEeEIera~rrn~EL-----EEr 225 (362)
.++|-.-...|..+..-|.++.-..+.+--.-..| ++.+|-.....|. ...+.++.+-+.....| .++
T Consensus 82 ls~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiR-li~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK 160 (234)
T cd07665 82 LSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIR-LLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDK 160 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 44555566678888888888888888887755544 6777776666663 23334444432222222 478
Q ss_pred HHHHHHhhHHHHHHHhhhhH
Q 018028 226 VKSLFVENQIWRDLAQTNEA 245 (362)
Q Consensus 226 lrql~~E~QaWq~~A~~nEA 245 (362)
+.++..|.+.|+..+..-+.
T Consensus 161 ~~~a~~Ev~e~e~k~~~a~~ 180 (234)
T cd07665 161 LQQAKDEIAEWESRVTQYER 180 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887755544
No 91
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=64.10 E-value=90 Score=32.47 Aligned_cols=84 Identities=13% Similarity=0.171 Sum_probs=48.3
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 152 LDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 152 l~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
+|.++..+-++|..+...-+..-..+++....+.-+.... +.........++.+-+.++....+...+|++++..+..
T Consensus 50 ~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~--l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~ 127 (390)
T PRK10920 50 AGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQKQE--LEGILKQQAKALDQANRQQAALAKQLDELQQKVATISG 127 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555655555555444444333333444433333222222 22333344566777788888899999999999988875
Q ss_pred hh-HHHH
Q 018028 232 EN-QIWR 237 (362)
Q Consensus 232 E~-QaWq 237 (362)
.. ..|.
T Consensus 128 ~~~~dWl 134 (390)
T PRK10920 128 SDAKTWL 134 (390)
T ss_pred CChhhHH
Confidence 54 6674
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=64.03 E-value=4.4 Score=41.51 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=23.9
Q ss_pred CCccccccccccccceEEeCCCCcccCccccccc----------------CCcCccccccc
Q 018028 309 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----------------IGSCPVCNFVV 353 (362)
Q Consensus 309 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----------------~~~CPvCR~~i 353 (362)
.....|..|+=+++ =|-+|-++. ...||.||+..
T Consensus 301 ~~~~~C~~C~CRPm-----------WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 301 PNEPPCQQCYCRPM-----------WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccCCCCccccccch-----------HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 45568999985554 367775543 47899999875
No 93
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=63.95 E-value=69 Score=25.11 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018028 172 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQ 234 (362)
Q Consensus 172 ~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~Q 234 (362)
+...+++...+.+-++.|.+.|...... ..-=++-|.=...+++....+..+|+++.....
T Consensus 13 ~~~i~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 13 REDIDKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566667777777776666655532 111122333444556667778888888877754
No 94
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=63.79 E-value=30 Score=30.23 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLA 240 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A 240 (362)
||+|-++.+..||+||..+|+.||...+..+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4999999999999999999999999887765
No 95
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.55 E-value=1e+02 Score=26.93 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=54.8
Q ss_pred CcccchHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018028 148 FSSLLDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVK 227 (362)
Q Consensus 148 ~~s~l~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlr 227 (362)
+...+-.-+.++|.+-..|+..+ +.+..+ |+..|..-...|++..+ ..+++.....+..+|+..++
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l-~~el~~----l~~~r~~l~~Eiv~l~~---------~~e~~~~~~~~~~~L~~el~ 78 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASL-QEELAR----LEAERDELREEIVKLME---------ENEELRALKKEVEELEQELE 78 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 43445566888888888888653 555554 34455555566666555 33344444444444454554
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018028 228 SLFVENQIWRDLAQTNEATANTLRSNLEQVL 258 (362)
Q Consensus 228 ql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l 258 (362)
.+....++--.+--+....+.-|++.++.+.
T Consensus 79 ~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 79 ELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4444444444444455555666777776654
No 96
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.44 E-value=1.3e+02 Score=34.97 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHhhhhHHHHHHHHHHHHHH
Q 018028 209 DEEIHRMRKLNWVLQERVKSLFVEN-------QIWRDLAQTNEATANTLRSNLEQVL 258 (362)
Q Consensus 209 EeEIera~rrn~ELEErlrql~~E~-------QaWq~~A~~nEA~A~~Lra~LeQ~l 258 (362)
|+=++.+.-+|.+||||+++|+.|. +.--.++.+|......||.+|+++-
T Consensus 447 E~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~ 503 (1243)
T KOG0971|consen 447 EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAK 503 (1243)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677888999999998888554 3344567888888888999988873
No 97
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.12 E-value=65 Score=32.88 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 018028 219 NWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 219 n~ELEErlrql~~E~QaWq~~ 239 (362)
.+.|||..++|..|..+++.+
T Consensus 379 k~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 379 KKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666776666666654
No 98
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=62.37 E-value=2.2e+02 Score=30.34 Aligned_cols=26 Identities=19% Similarity=0.095 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhh
Q 018028 219 NWVLQERVKSLFVENQIWRDLAQTNE 244 (362)
Q Consensus 219 n~ELEErlrql~~E~QaWq~~A~~nE 244 (362)
..+|..+|+.|..-...|......+.
T Consensus 380 l~~~~~~~~~le~~~~~~~~~~~~~~ 405 (582)
T PF09731_consen 380 LAELNSRLKALEEALDARSEAEDENR 405 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444443
No 99
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=62.12 E-value=74 Score=31.99 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=11.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERV 226 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErl 226 (362)
.||.+.|.||+.++-+..-..|.|
T Consensus 82 ~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 82 NRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444444
No 100
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=61.97 E-value=1.2e+02 Score=27.25 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~ 257 (362)
+.++++++......+++.+.++.+..+.+.=+..+...+.....++.+++++
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQL 177 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333333333333333333333333
No 101
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=61.89 E-value=42 Score=28.14 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHhHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 195 SAIQEGVANKLKE---KDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 195 ~avE~~~~~rLRe---KEeEIera~rrn~ELEErlrql~~ 231 (362)
..+|+.+.+|+-. -|+|||++..-.++||+++.+++.
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~ 66 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCE 66 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666533 468999999999999999999864
No 102
>smart00338 BRLZ basic region leucin zipper.
Probab=61.64 E-value=68 Score=24.26 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFVENQIW 236 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~E~QaW 236 (362)
.+-+.+++.+...|.+|..++.++..|.+..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555444
No 103
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=61.53 E-value=86 Score=25.36 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=28.1
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018028 156 IIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGV 201 (362)
Q Consensus 156 l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~ 201 (362)
....++.+..++-.-|..+.++|+..|++.+ ..|+..++..-
T Consensus 29 ~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e----~~ll~~l~~~~ 70 (127)
T smart00502 29 IIQEVEENAADVEAQIKAAFDELRNALNKRK----KQLLEDLEEQK 70 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3445666777777777777788888888777 44555555443
No 104
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.34 E-value=1.1e+02 Score=34.38 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 211 EIHRMRKLNWVLQERVKSLF-----------VENQIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~-----------~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
.++++..+-..|+.|++.+. .+-..|...-+.=+.....|++.++|+..+.
T Consensus 601 R~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 601 RYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777664 2226676666555556777888888876654
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.23 E-value=1.2e+02 Score=34.60 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVK 227 (362)
Q Consensus 210 eEIera~rrn~ELEErlr 227 (362)
.|++.++-+..+|++||.
T Consensus 444 ~eletLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 344444445555555443
No 106
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=60.68 E-value=63 Score=26.40 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018028 202 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWR 237 (362)
Q Consensus 202 ~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq 237 (362)
-++|+.|++||++.+.....|..+|......+---+
T Consensus 11 ~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq 46 (76)
T PF11544_consen 11 KKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQ 46 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999998877765544433
No 107
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=60.18 E-value=3.4e+02 Score=31.88 Aligned_cols=73 Identities=21% Similarity=0.222 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018028 154 QDIIFRLQQQQSEIDRYIAQHTEKVILE-------LEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERV 226 (362)
Q Consensus 154 ~~l~~~l~qQ~~EID~~i~~q~ErLR~~-------LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErl 226 (362)
+|+..+|.+|+.++-++..-|-|=.|+- ||-+--|++..-++.-+.+--+||. +|+.+-.+++.+|.+++
T Consensus 879 ed~~~~l~~qQe~~a~l~~sQ~el~~~l~~ql~g~le~~l~~~iEk~lks~~d~~~~rl~---e~la~~e~~~r~~~~qi 955 (1283)
T KOG1916|consen 879 EDLLPQLLAQQETMAQLMASQKELQRQLSNQLTGPLEVALGRMIEKSLKSNADALWARLQ---EELAKNEKALRDLQQQI 955 (1283)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHhhhhhhhHHHHHH
Confidence 4566677777777777766665433321 2223333333333333333333333 35555566666777666
Q ss_pred HHH
Q 018028 227 KSL 229 (362)
Q Consensus 227 rql 229 (362)
-|.
T Consensus 956 ~q~ 958 (1283)
T KOG1916|consen 956 TQQ 958 (1283)
T ss_pred HHH
Confidence 554
No 108
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=59.84 E-value=1.7e+02 Score=28.27 Aligned_cols=82 Identities=22% Similarity=0.309 Sum_probs=38.8
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 152 LDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 152 l~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
|.+-|+.+|++= ++|..++.+|...|...+.++.... +.+....-.-|++.-..|+.+...++.++-.+..+..
T Consensus 9 LNdRla~YIekV-----r~LE~~N~~Le~~i~~~~~~~~~~~-~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 9 LNDRLASYIEKV-----RFLEQENKRLESEIEELREKKGEEV-SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHHhcccccC-cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 455566665542 4556666666666666665542221 2222222233444444666666666666666666655
Q ss_pred hhHHHHHH
Q 018028 232 ENQIWRDL 239 (362)
Q Consensus 232 E~QaWq~~ 239 (362)
|...++..
T Consensus 83 e~~~~r~k 90 (312)
T PF00038_consen 83 ELEDLRRK 90 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 109
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=59.74 E-value=1.6e+02 Score=32.39 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=55.4
Q ss_pred HHHhhhHHH-HHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHh---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 159 RLQQQQSEI-DRYIAQHTEKV----ILELEEQRKRQSRMLISAIQEG---VANKLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 159 ~l~qQ~~EI-D~~i~~q~ErL----R~~LeE~RqRh~r~Ll~avE~~---~~~rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
+|++|-.|+ |.|+++.+++| ....+..+.+....=+.-++.. +..+|..|+.|+..+...+.++...+.|-.
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888 88999999984 4455566665555555555533 234678889999998887777666665543
Q ss_pred HhhHHHHHHHhhhhH
Q 018028 231 VENQIWRDLAQTNEA 245 (362)
Q Consensus 231 ~E~QaWq~~A~~nEA 245 (362)
+ +||.++.++|+
T Consensus 244 a---~~q~l~~e~e~ 255 (617)
T PF15070_consen 244 A---AYQQLASEKEE 255 (617)
T ss_pred H---HHHHHHHHHHH
Confidence 2 34445544444
No 110
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=59.26 E-value=47 Score=36.07 Aligned_cols=63 Identities=25% Similarity=0.323 Sum_probs=46.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHH--HHHHHHHhH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018028 172 AQHTEKVILELEEQRKRQSRM--LISAIQEGV---ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQ 234 (362)
Q Consensus 172 ~~q~ErLR~~LeE~RqRh~r~--Ll~avE~~~---~~rLReKEeEIera~rrn~ELEErlrql~~E~Q 234 (362)
.+...+|+-.+.+.|+++-.+ .+..++..+ ..+|-++++|+.-++++...||+.++.|..|+.
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667777777777766555 344444333 466788999999999999999999999998874
No 111
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=59.14 E-value=84 Score=27.66 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=32.7
Q ss_pred HhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHhhhHHHHHHHHHHHHHHH
Q 018028 161 QQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGV----ANKLKEKDEEIHRMRKLNWVLQ 223 (362)
Q Consensus 161 ~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~----~~rLReKEeEIera~rrn~ELE 223 (362)
++...++|+. .+++.++..+.+.|. -|.+++..+ ..+--..+..|..+.+|.+|||
T Consensus 80 ~~~i~~~~~~--~e~~~~a~~~~~l~~-----~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 80 QQRIAELEQE--CENEDIALDVQKLRV-----ELEAAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566666 567777777776665 334444333 2333445567777777777775
No 112
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=58.53 E-value=5 Score=27.48 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=12.8
Q ss_pred CCcCccccccccceEE
Q 018028 343 IGSCPVCNFVVDASLH 358 (362)
Q Consensus 343 ~~~CPvCR~~i~~~V~ 358 (362)
...||+|..+...+.+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 5799999998776654
No 113
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=58.01 E-value=2 Score=42.08 Aligned_cols=40 Identities=28% Similarity=0.737 Sum_probs=30.3
Q ss_pred ccccccccc-----cccceEEeC-CCCcccCccccccc----CCcCc--cccc
Q 018028 311 RMLCRRCGE-----KESSVLLLP-CRHLCLCTVCGSCL----IGSCP--VCNF 351 (362)
Q Consensus 311 ~~~C~iC~~-----~~a~vlLlP-CrHlclC~~C~~~l----~~~CP--vCR~ 351 (362)
.+.|++|.. ...-+++-| |-|. +|..|..++ ...|| .|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 347999986 344555668 9999 899998887 57899 7754
No 114
>PRK04863 mukB cell division protein MukB; Provisional
Probab=57.99 E-value=2.9e+02 Score=33.70 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018028 207 EKDEEIHRMRKLNWVLQERVKSLFVENQIWR 237 (362)
Q Consensus 207 eKEeEIera~rrn~ELEErlrql~~E~QaWq 237 (362)
+.+++++.+..+..++++++..+..+-+.|+
T Consensus 366 e~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 366 EQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 115
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=57.84 E-value=41 Score=33.78 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~ 239 (362)
-|++-+.+||.+|.+++..++-|-+--+.+
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888887777666555443
No 116
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.79 E-value=1.7e+02 Score=27.60 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=6.4
Q ss_pred HHhhhHHHHHHHH
Q 018028 160 LQQQQSEIDRYIA 172 (362)
Q Consensus 160 l~qQ~~EID~~i~ 172 (362)
.+.-+.+|+..|.
T Consensus 36 ~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 36 NEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445555554
No 117
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=56.68 E-value=92 Score=25.04 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~ 230 (362)
+.+.+++.++.+||.||..|+
T Consensus 57 ~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 57 AVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356666777777777776664
No 118
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=56.42 E-value=52 Score=33.11 Aligned_cols=40 Identities=20% Similarity=0.504 Sum_probs=22.0
Q ss_pred ccccccccccceEEeCC----CC-cccCccccccc---CCcCcccccc
Q 018028 313 LCRRCGEKESSVLLLPC----RH-LCLCTVCGSCL---IGSCPVCNFV 352 (362)
Q Consensus 313 ~C~iC~~~~a~vlLlPC----rH-lclC~~C~~~l---~~~CPvCR~~ 352 (362)
.|+||++.+..-++..- |+ +..|.-|+... -..||.|...
T Consensus 186 ~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 186 LCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred cCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 57777776654333222 11 23566666554 5677777664
No 119
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.13 E-value=3.1e+02 Score=30.73 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 222 LQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 222 LEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
+..|.++++.|...-+...+..|.....|..+++++..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555566666666666666666644433
No 120
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.85 E-value=1.9e+02 Score=27.47 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018028 208 KDEEIHRMRKLNWVLQERVKSLFVENQI 235 (362)
Q Consensus 208 KEeEIera~rrn~ELEErlrql~~E~Qa 235 (362)
..++++.......+|+++-++|..|.+.
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455544444444444
No 121
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=55.12 E-value=83 Score=24.25 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 018028 171 IAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKS 228 (362)
Q Consensus 171 i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrq 228 (362)
|--...+++.+|...-+|....|+.... -..|.+.+.+.|.||...++|
T Consensus 10 ip~~~~~~W~~L~~~l~rY~~vL~~R~~---------l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 10 IPDEKIRLWDALENFLKRYNKVLLDRAA---------LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 3445677888888888888887776555 566889999999999988876
No 122
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=54.47 E-value=79 Score=30.15 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 018028 175 TEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATAN 248 (362)
Q Consensus 175 ~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~ 248 (362)
.++-|..|+|+||.-.- .+++ |.+++.+.+-.+++.++.+..|+..-+.+|..-+.+|.
T Consensus 105 se~YWk~lAE~RR~AL~---eaL~------------ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~ 163 (200)
T PF07412_consen 105 SENYWKELAEERRKALE---EALE------------ENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAE 163 (200)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH---HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888865433 3333 44444444445555555555555555555544445443
No 123
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=54.43 E-value=1.4e+02 Score=31.27 Aligned_cols=83 Identities=22% Similarity=0.189 Sum_probs=56.3
Q ss_pred chHHHHHHHHhhhHHH---HHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018028 152 LDQDIIFRLQQQQSEI---DRYIAQHTEKVILELEEQR-KRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVK 227 (362)
Q Consensus 152 l~~~l~~~l~qQ~~EI---D~~i~~q~ErLR~~LeE~R-qRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlr 227 (362)
+|-+..+..++|...+ +++++.|.+.+..+.+.++ -++...++.+.+ ..|+..|.+++.-.+...|++.+++
T Consensus 46 LGagg~~f~QqQ~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q----~el~~l~~~~~~~~~ql~e~Q~~v~ 121 (391)
T COG2959 46 LGAGGYYFGQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQ----AELDRLERQLETLQKQLSELQKKVA 121 (391)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4666777778887655 4566667765555555444 255555555555 3455577888889999999999999
Q ss_pred HHHHh-hHHHHH
Q 018028 228 SLFVE-NQIWRD 238 (362)
Q Consensus 228 ql~~E-~QaWq~ 238 (362)
.+..- ...|.-
T Consensus 122 ~is~~~~~dWll 133 (391)
T COG2959 122 TISGSDRKDWLL 133 (391)
T ss_pred HhccCChhhHHH
Confidence 88844 556653
No 124
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=54.22 E-value=85 Score=36.02 Aligned_cols=49 Identities=27% Similarity=0.172 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 211 EIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
+++.++++...++.++..+.+|.+.-|..+++|-.-.--||.++.|.++
T Consensus 352 ~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a 400 (980)
T KOG0980|consen 352 LKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLA 400 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444443
No 125
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=54.14 E-value=2.6e+02 Score=32.24 Aligned_cols=23 Identities=13% Similarity=-0.114 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 018028 211 EIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~~E~ 233 (362)
+.|...||.+|=|+|.+|-..|.
T Consensus 957 k~e~e~kRK~eEeqr~~qee~e~ 979 (1259)
T KOG0163|consen 957 KAEMETKRKAEEEQRKAQEEEER 979 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH
Confidence 34444444455444544444333
No 126
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.00 E-value=38 Score=28.70 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=26.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~ 238 (362)
+.++.+.|++.+..+|.+|+++-++|..|...|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56677778888888888888888888777777765
No 127
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=53.95 E-value=47 Score=38.71 Aligned_cols=45 Identities=22% Similarity=0.153 Sum_probs=30.5
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHH
Q 018028 194 ISAIQEGVANKLKEKDEEIHRMRKL-NWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 194 l~avE~~~~~rLReKEeEIera~rr-n~ELEErlrql~~E~QaWq~ 238 (362)
|..+|..-..+|+||-+|.++.-+. +..||||++.+..=+++.|.
T Consensus 380 L~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~ 425 (1714)
T KOG0241|consen 380 LEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQA 425 (1714)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555567788888888876544 67788888887665555543
No 128
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=52.23 E-value=46 Score=28.20 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=21.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
+++.+.+.|++++..+|.+|+++++.+..
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455667778888888888888887765
No 129
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=52.21 E-value=5.8 Score=29.14 Aligned_cols=37 Identities=30% Similarity=0.790 Sum_probs=22.9
Q ss_pred ccccccc--cccceEEeCCC-----CcccCccccccc-----CCcCcccc
Q 018028 313 LCRRCGE--KESSVLLLPCR-----HLCLCTVCGSCL-----IGSCPVCN 350 (362)
Q Consensus 313 ~C~iC~~--~~a~vlLlPCr-----HlclC~~C~~~l-----~~~CPvCR 350 (362)
.|+||++ .+.+.++.||. |+ .=..|-... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 3899996 66778889995 11 112333222 45799985
No 130
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=51.90 E-value=1e+02 Score=34.77 Aligned_cols=85 Identities=24% Similarity=0.289 Sum_probs=50.8
Q ss_pred HHHhHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 018028 171 IAQHTEKVILELEEQRKR------QSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNE 244 (362)
Q Consensus 171 i~~q~ErLR~~LeE~RqR------h~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nE 244 (362)
+..+++++-..|+.+|+| |...|...+++...--++|--+-++++++...+++---+|+.+-..+-.+....+|
T Consensus 168 l~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E 247 (916)
T KOG0249|consen 168 LEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIE 247 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 456688888888888876 55666667765544445555555566665555555544444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 018028 245 ATANTLRSNLEQVLA 259 (362)
Q Consensus 245 A~A~~Lra~LeQ~l~ 259 (362)
. ||.+++|+-.
T Consensus 248 ~----Lr~e~~qL~~ 258 (916)
T KOG0249|consen 248 D----LRGELDQLRR 258 (916)
T ss_pred H----HHHHHHHHHH
Confidence 3 6777777654
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=51.88 E-value=7.2 Score=39.73 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=32.1
Q ss_pred CCcccccccccc-------------------ccceEEeCCCCcccCcccccc----c-------CCcCcccccccc---c
Q 018028 309 GGRMLCRRCGEK-------------------ESSVLLLPCRHLCLCTVCGSC----L-------IGSCPVCNFVVD---A 355 (362)
Q Consensus 309 ~~~~~C~iC~~~-------------------~a~vlLlPCrHlclC~~C~~~----l-------~~~CPvCR~~i~---~ 355 (362)
...+.|++|+.- +-+-.|-||+|+|.=+.-.-. + ...||.|-.... +
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~~ 418 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQG 418 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCCc
Confidence 345689999873 334456899999642221100 0 478999987654 3
Q ss_pred eEEEee
Q 018028 356 SLHVNL 361 (362)
Q Consensus 356 ~V~V~l 361 (362)
.|+++|
T Consensus 419 ~ikliF 424 (429)
T KOG3842|consen 419 YIKLIF 424 (429)
T ss_pred eEEEEE
Confidence 455443
No 132
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=51.87 E-value=4.5 Score=30.40 Aligned_cols=43 Identities=21% Similarity=0.640 Sum_probs=25.4
Q ss_pred ccccccccccceEEeCCCCcccCccccccc---CCcCccccccccceE
Q 018028 313 LCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 357 (362)
Q Consensus 313 ~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V 357 (362)
.|+.|.-...+.+ -|.---+|..|-..+ .+.||+|..+....|
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 5888888777655 477666999998876 799999999887655
No 133
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=51.82 E-value=1.3e+02 Score=24.45 Aligned_cols=84 Identities=21% Similarity=0.323 Sum_probs=44.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHhhhhH
Q 018028 172 AQHTEKVILELEEQRKRQSRMLISAIQ--EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWR----DLAQTNEA 245 (362)
Q Consensus 172 ~~q~ErLR~~LeE~RqRh~r~Ll~avE--~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq----~~A~~nEA 245 (362)
+..+.+++..+.+-++-|...+ .... ..+..+|. ..++.++.+..++.++|+.+..++..-. ...+....
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l-~~~~~~~~~~~~l~---~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~ 89 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELL-TPPDADKELREKLE---RLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKA 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHH
Confidence 3444555555555555555443 3332 22333333 3566667777788888888866554211 12334445
Q ss_pred HHHHHHHHHHHHHH
Q 018028 246 TANTLRSNLEQVLA 259 (362)
Q Consensus 246 ~A~~Lra~LeQ~l~ 259 (362)
....|...+..++.
T Consensus 90 q~~~L~~~f~~~m~ 103 (117)
T smart00503 90 QTEKLRKKFKEVMN 103 (117)
T ss_pred HHHHHHHHHHHHHH
Confidence 55667766666655
No 134
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=51.31 E-value=3e+02 Score=29.68 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=39.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH----HHHHhh-----------HHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVK----SLFVEN-----------QIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlr----ql~~E~-----------QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
+-|-+||+||+|+.+.-.+||.-.. .|..|- ..+|..-++|.+----|++.|+.+++|+
T Consensus 453 k~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 453 KTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 5588999999999999888885332 122221 1245555666666667788887777764
No 135
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=51.12 E-value=3.1e+02 Score=32.31 Aligned_cols=69 Identities=14% Similarity=0.282 Sum_probs=42.9
Q ss_pred HhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHH
Q 018028 161 QQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKD---EEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 161 ~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKE---eEIera~rrn~ELEErlrql~ 230 (362)
..+..+++.-+..+.+.+...+++.++.+.. -+..++..--..|..+. ..|..++++..+|++.++++.
T Consensus 720 ~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~-~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 720 KAQWQELEAELDEQIEQIKQEIAAAKQEAKE-QLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIE 791 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666665544433 35566666556665554 467777777777887777766
No 136
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=50.80 E-value=4.2 Score=30.31 Aligned_cols=25 Identities=28% Similarity=0.695 Sum_probs=12.1
Q ss_pred CCCCcccCccccccc----CCcCccccccc
Q 018028 328 PCRHLCLCTVCGSCL----IGSCPVCNFVV 353 (362)
Q Consensus 328 PCrHlclC~~C~~~l----~~~CPvCR~~i 353 (362)
||++. +|.+|...+ ...||.||.+.
T Consensus 19 ~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 46666 899996554 57899999864
No 137
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.63 E-value=2.6e+02 Score=27.51 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=42.9
Q ss_pred cchHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 151 LLDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 151 ~l~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
.++|-....+..|+.-||.|++.--.++-..+.+--++-++.. --+....+-|++-+.|+.+-+....+-+++.-.+.
T Consensus 15 ~l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~--~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ie 92 (246)
T KOG4657|consen 15 SLGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQ--VELENLKADLRETENELVKVNELKTEKEARQMGIE 92 (246)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678899999999999987663333222222222111110 01112223355555555555554444444444444
Q ss_pred HhhHHHHH
Q 018028 231 VENQIWRD 238 (362)
Q Consensus 231 ~E~QaWq~ 238 (362)
+|.-+-|.
T Consensus 93 qeik~~q~ 100 (246)
T KOG4657|consen 93 QEIKATQS 100 (246)
T ss_pred HHHHHHHH
Confidence 44444443
No 138
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.50 E-value=2.6e+02 Score=31.61 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=12.3
Q ss_pred CCCCCCCcccccccccccccC
Q 018028 80 PFAEPMPEQTMLPFYQAFDCN 100 (362)
Q Consensus 80 ~~~~~~~~~~~~~~y~~~~~~ 100 (362)
++|. .+..-+|+|..+|.|
T Consensus 359 ~vpa--~~~~~i~~~~~i~~~ 377 (782)
T PRK00409 359 PIPA--NEPSEIPVFKEIFAD 377 (782)
T ss_pred Cccc--CCCccccccceEEEe
Confidence 4444 443468888888865
No 139
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=49.81 E-value=8.1 Score=26.03 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=12.9
Q ss_pred CCcCccccccccceEE
Q 018028 343 IGSCPVCNFVVDASLH 358 (362)
Q Consensus 343 ~~~CPvCR~~i~~~V~ 358 (362)
...||+|..++..++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 5699999998877654
No 140
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=49.73 E-value=1.3e+02 Score=27.59 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 190 SRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 190 ~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
|+++..+-. ++||.|..++..+..+-++++.++.
T Consensus 92 yk~~aKsyA-------kkKD~Ea~~L~~KLkeEq~kv~~ME 125 (152)
T PF11500_consen 92 YKQLAKSYA-------KKKDAEAMRLAEKLKEEQEKVAEME 125 (152)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555 6799999999999999998887774
No 141
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=49.32 E-value=1.8e+02 Score=32.05 Aligned_cols=78 Identities=12% Similarity=0.208 Sum_probs=52.9
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018028 159 RLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 159 ~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~ 238 (362)
..+||..++.+=|....++.-....|.|. ..+.+...+ .....||-..|.+++........|++.+..+...-..|.-
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~-~~~~~~~~~-~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~l 420 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRV-KTEQAQASV-HQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMI 420 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence 45566666666665555566666666643 333333333 3456777888889999999999999999888876677753
No 142
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.17 E-value=1.4e+02 Score=23.92 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 018028 217 KLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 217 rrn~ELEErlrql~~E~QaWq~~ 239 (362)
..|.+|++...++..|-.+|+..
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777665
No 143
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=49.09 E-value=59 Score=31.02 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=13.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERV 226 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErl 226 (362)
++|.+-+.|||.+..+.+.|++++
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555556666666666665555
No 144
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=49.01 E-value=14 Score=43.60 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=35.9
Q ss_pred ccccccccccccceEEeC-CCCcc----cCccccccc-CC-----cCccccccccceEEE
Q 018028 311 RMLCRRCGEKESSVLLLP-CRHLC----LCTVCGSCL-IG-----SCPVCNFVVDASLHV 359 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlP-CrHlc----lC~~C~~~l-~~-----~CPvCR~~i~~~V~V 359 (362)
.+.|.-|+..... .+.| ||... .|..|...+ .. .||-|..+......+
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~ 725 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR 725 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE
Confidence 4689999986544 4888 88663 599998875 33 899999888776554
No 145
>PRK11637 AmiB activator; Provisional
Probab=48.60 E-value=2.5e+02 Score=28.79 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=10.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql 229 (362)
+++.+.+|+.+.++..++++.+.++
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 146
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.54 E-value=2.7e+02 Score=27.21 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=20.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~ 238 (362)
+.+++.+-|+..+.++...|++.+..+..+-..-+.
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666665544444433
No 147
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=48.18 E-value=2.1e+02 Score=31.14 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=40.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 018028 173 QHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 252 (362)
Q Consensus 173 ~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra 252 (362)
.|.+||++.+++-.+.+-|- ..| |++-++++.++..+...|+-+++...--.++-...-+..|+--+.+..
T Consensus 28 ~ef~rl~k~fed~~ek~~r~---~ae------~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~ 98 (604)
T KOG3564|consen 28 DEFIRLRKDFEDFEEKWKRT---DAE------LGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLET 98 (604)
T ss_pred HHHHHHHHHHHHHHHHHhhh---hHH------HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34456677777666665552 222 455666777777777777776665543333222222233333344444
Q ss_pred HHHHH
Q 018028 253 NLEQV 257 (362)
Q Consensus 253 ~LeQ~ 257 (362)
+.+++
T Consensus 99 ~i~~i 103 (604)
T KOG3564|consen 99 QIQLI 103 (604)
T ss_pred HHHHH
Confidence 44443
No 148
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=47.92 E-value=14 Score=29.79 Aligned_cols=28 Identities=29% Similarity=0.758 Sum_probs=19.9
Q ss_pred ccccccccc--ccceEEeCCCCcccCccccc
Q 018028 312 MLCRRCGEK--ESSVLLLPCRHLCLCTVCGS 340 (362)
Q Consensus 312 ~~C~iC~~~--~a~vlLlPCrHlclC~~C~~ 340 (362)
..|.+|... ...+++.||+|. .-..|..
T Consensus 79 ~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 368888873 456788899987 4666653
No 149
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=47.82 E-value=84 Score=25.91 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 018028 208 KDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 208 KEeEIera~rrn~ELEErlrql~ 230 (362)
-+.||++++.|..+|++|++.|.
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le 28 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELE 28 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999986
No 150
>smart00338 BRLZ basic region leucin zipper.
Probab=47.80 E-value=1.2e+02 Score=22.90 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 018028 218 LNWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 252 (362)
Q Consensus 218 rn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra 252 (362)
...+||.++..|..|+..++..+..-+.-...|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688888889988888887765554444444443
No 151
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.65 E-value=2.7e+02 Score=31.43 Aligned_cols=14 Identities=14% Similarity=0.541 Sum_probs=8.2
Q ss_pred Cccccccccccccc
Q 018028 86 PEQTMLPFYQAFDC 99 (362)
Q Consensus 86 ~~~~~~~~y~~~~~ 99 (362)
.+...+|+|.++|.
T Consensus 358 ~~~~~~~~~d~i~~ 371 (771)
T TIGR01069 358 NEHSEIPYFEEIFA 371 (771)
T ss_pred Cccccccchhheee
Confidence 44346777766654
No 152
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=46.99 E-value=1.4e+02 Score=23.36 Aligned_cols=52 Identities=23% Similarity=0.191 Sum_probs=35.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 166 EIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 166 EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql 229 (362)
.+..-++.+.+.....|+...=.+|+.++.+.+ ||..+.....++...+..+
T Consensus 26 ~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~------------~I~~m~~~~~~l~~~l~~l 77 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRKLVYENYRDFIEASD------------EISSMENDLSELRNLLSEL 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 444455677788888888889999999999888 4555554444444444444
No 153
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.98 E-value=4e+02 Score=28.66 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=2.4
Q ss_pred eEEeCC
Q 018028 324 VLLLPC 329 (362)
Q Consensus 324 vlLlPC 329 (362)
++++.|
T Consensus 246 ~v~ls~ 251 (514)
T TIGR03319 246 AVILSG 251 (514)
T ss_pred eEEecC
Confidence 333433
No 154
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=46.59 E-value=4.3e+02 Score=28.95 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 018028 234 QIWRDLAQTNEATANTLRSNLE 255 (362)
Q Consensus 234 QaWq~~A~~nEA~A~~Lra~Le 255 (362)
+.++......+..+..|+.+|.
T Consensus 293 r~~qe~lqaSqq~~~~L~~EL~ 314 (546)
T PF07888_consen 293 RSAQEQLQASQQEAELLRKELS 314 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554443
No 155
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=46.44 E-value=1.4e+02 Score=26.69 Aligned_cols=71 Identities=28% Similarity=0.373 Sum_probs=38.7
Q ss_pred hHHHHHHHHhhhHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHhhhHHHHHHHHHHHHHHH
Q 018028 153 DQDIIFRLQQQQSEIDRYIAQH------TEKVILELEEQRKRQSRMLISAIQEGVA---NKLKEKDEEIHRMRKLNWVLQ 223 (362)
Q Consensus 153 ~~~l~~~l~qQ~~EID~~i~~q------~ErLR~~LeE~RqRh~r~Ll~avE~~~~---~rLReKEeEIera~rrn~ELE 223 (362)
|.-+.++|++=..==+.|.+-+ ...|-..++|+| +++..-|..+- ..++.||.||..++++..++.
T Consensus 47 D~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~q-----sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 47 DEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQ-----SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556665554444555443 234444454443 34444443322 347889999988888766665
Q ss_pred HHHHH
Q 018028 224 ERVKS 228 (362)
Q Consensus 224 Erlrq 228 (362)
..-+.
T Consensus 122 ~~n~~ 126 (131)
T PF04859_consen 122 RANKS 126 (131)
T ss_pred HHHHH
Confidence 54433
No 156
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=46.39 E-value=64 Score=30.16 Aligned_cols=18 Identities=33% Similarity=0.614 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018028 212 IHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 212 Iera~rrn~ELEErlrql 229 (362)
+++++.||.+|++++.+|
T Consensus 49 ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 49 LERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555555554
No 157
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=46.10 E-value=67 Score=31.00 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLR 251 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lr 251 (362)
.++.+...+...|++.++++..|..--...+..-+.....|+
T Consensus 26 ~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 26 EALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666665555555555444444
No 158
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.79 E-value=44 Score=31.68 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 208 KDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 208 KEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
-|=|+-+++|..++||+++.++..+...- ........+-++.+++|+|.
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHH
Confidence 45577788888999999998887665543 22222333446889999887
No 159
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=45.48 E-value=27 Score=31.71 Aligned_cols=74 Identities=22% Similarity=0.412 Sum_probs=44.7
Q ss_pred HHHhhhHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 159 RLQQQQSEIDRYIAQH-----TEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 159 ~l~qQ~~EID~~i~~q-----~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~ 233 (362)
.++.+-.+|-..|..| .-||+..+.-+|+||..+ |-...+++.-.|+-
T Consensus 46 ~le~~P~~v~~WI~~hm~p~l~nklkQaIRArRKRhFNA------------------E~qhTrKKSIDLey--------- 98 (150)
T PRK05097 46 KLENEPVKVLEWIDKHMNPELVNRMKQTIRARRKRHFNA------------------EHQHTRKKSIDLEY--------- 98 (150)
T ss_pred HhccCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHccCCc------------------ccccccccCccccH---------
Confidence 4556666777777665 468888888888888764 33344444434433
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 234 QIWRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 234 QaWq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
..|++++......-.+|--+..+++.
T Consensus 99 ~vW~rLs~~a~~~~~TLSetI~~li~ 124 (150)
T PRK05097 99 RVWQRLAGLAQRRGKTLSETIVQLIE 124 (150)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33666666666555555555555554
No 160
>PRK02224 chromosome segregation protein; Provisional
Probab=45.31 E-value=4.8e+02 Score=29.12 Aligned_cols=45 Identities=29% Similarity=0.297 Sum_probs=33.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANT 249 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~ 249 (362)
+-.+.+.++....+..+|++++..+..+.+.|...|.+-++....
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~ 569 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334456777788888899999999999999999877665554433
No 161
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=44.67 E-value=5.1e+02 Score=29.29 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=30.8
Q ss_pred HHHHhhhHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 158 FRLQQQQSEIDRYIAQH-------------TEKVILELEEQRKRQSRMLISAIQ 198 (362)
Q Consensus 158 ~~l~qQ~~EID~~i~~q-------------~ErLR~~LeE~RqRh~r~Ll~avE 198 (362)
.++.+.+.|.||+..++ --+||..|.|.+.|..|-|-.-.|
T Consensus 48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyse 101 (717)
T PF09730_consen 48 QELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSE 101 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 45667777888876654 558999999999999887765544
No 162
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.55 E-value=2.5e+02 Score=31.72 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=7.0
Q ss_pred HHhhhHHHHHHHH
Q 018028 160 LQQQQSEIDRYIA 172 (362)
Q Consensus 160 l~qQ~~EID~~i~ 172 (362)
+.....+++.+|.
T Consensus 506 ~~~~~~~~~~li~ 518 (771)
T TIGR01069 506 YGEFKEEINVLIE 518 (771)
T ss_pred HHhhHHHHHHHHH
Confidence 3444556666663
No 163
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.55 E-value=2.4e+02 Score=29.81 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=23.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~ 233 (362)
..|++-+.++.+.++++.+++.++..+..+-
T Consensus 80 ~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 80 AQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3477778888888888888888888886544
No 164
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.00 E-value=73 Score=34.04 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~ 239 (362)
.|++.+.++..++|++|+.+..|++.-+..
T Consensus 90 qElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 90 RELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 456656666777777777666665554443
No 165
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=43.51 E-value=1.8e+02 Score=25.71 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=48.3
Q ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 198 QEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 198 E~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
+..|+..||.-..||......|.+.-.+|..+..|--+||....--+. +..+.++++...
T Consensus 35 DDEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l~~----lD~~V~~aY~Kr 94 (131)
T PF10198_consen 35 DDEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRILDD----LDKQVEQAYKKR 94 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 456777788888899999999999999999999999999998665444 677777776653
No 166
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=43.27 E-value=1.8e+02 Score=27.08 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018028 194 ISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVL 258 (362)
Q Consensus 194 l~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l 258 (362)
...+...|-.-.++-++||.++.++...||+-..++ ..++ ..|+-|.++|+..-
T Consensus 111 f~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~----k~Lr-------nKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 111 FARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKS----KTLR-------NKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHH
Confidence 333333444445667777777777776666433222 2333 33455666666543
No 167
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=43.26 E-value=3e+02 Score=33.19 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHH
Q 018028 212 IHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEAT 246 (362)
Q Consensus 212 Iera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~ 246 (362)
+..+..+..+|+-++..|..+..---..|++.+.+
T Consensus 1614 ~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~ 1648 (1758)
T KOG0994|consen 1614 ATSATQQLGELETRMEELKHKAAQNSAEAKQAEKT 1648 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33445555566666555554433333333333333
No 168
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=42.42 E-value=89 Score=36.70 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH
Q 018028 214 RMRKLNWVLQERVKSLFVENQI 235 (362)
Q Consensus 214 ra~rrn~ELEErlrql~~E~Qa 235 (362)
....++.+|++.+.++.++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 188 ELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777666544
No 169
>PLN02189 cellulose synthase
Probab=42.38 E-value=15 Score=42.35 Aligned_cols=44 Identities=23% Similarity=0.643 Sum_probs=33.6
Q ss_pred cccccccccc----ccceEEeCCC--CcccCccccccc----CCcCcccccccc
Q 018028 311 RMLCRRCGEK----ESSVLLLPCR--HLCLCTVCGSCL----IGSCPVCNFVVD 354 (362)
Q Consensus 311 ~~~C~iC~~~----~a~vlLlPCr--HlclC~~C~~~l----~~~CPvCR~~i~ 354 (362)
.-.|.||++. ...-+|+.|+ ...+|..|..-- ...||.|++...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3489999997 6666888895 335899997442 689999998765
No 170
>COG3120 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.36 E-value=1.3e+02 Score=27.01 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 018028 209 DEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 260 (362)
Q Consensus 209 EeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q 260 (362)
+.|-...+++.-+|| -..|++++.....+-.+|..+..+++..
T Consensus 83 NaE~qhTrKKSIDLe---------y~VW~rLs~~a~~~g~TLSetI~~li~e 125 (149)
T COG3120 83 NAEHQHTRKKSIDLE---------YAVWQRLSGLARRRGKTLSETIVYLIEE 125 (149)
T ss_pred cHhhhhhhhccccHH---------HHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345566666655554 4458888888888777777777777654
No 171
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=42.23 E-value=2.2e+02 Score=24.33 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 018028 212 IHRMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 212 Iera~rrn~ELEErlrql~~E 232 (362)
++.++++..++-.+|++|...
T Consensus 50 ~~~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 50 VQEIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555443
No 172
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.66 E-value=75 Score=30.95 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH
Q 018028 214 RMRKLNWVLQERVKSLFVENQI 235 (362)
Q Consensus 214 ra~rrn~ELEErlrql~~E~Qa 235 (362)
|-+.||.|||+.+++...+.+.
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~ 111 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISS 111 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444443
No 173
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.50 E-value=2e+02 Score=23.71 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018028 211 EIHRMRKLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~~E~QaWq~~ 239 (362)
|++.++--..+|+..-.|+..|-++||.+
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555667888888999999999887
No 174
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.44 E-value=2.9e+02 Score=31.20 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=9.1
Q ss_pred HHHhhhHHHHHHHH
Q 018028 159 RLQQQQSEIDRYIA 172 (362)
Q Consensus 159 ~l~qQ~~EID~~i~ 172 (362)
.+..+..+++.+|.
T Consensus 510 ~~~~~~~~~~~li~ 523 (782)
T PRK00409 510 LIGEDKEKLNELIA 523 (782)
T ss_pred HHhhhhhHHHHHHH
Confidence 34556667777774
No 175
>PHA02562 46 endonuclease subunit; Provisional
Probab=41.22 E-value=4.4e+02 Score=27.51 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=29.7
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018028 194 ISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 194 l~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~ 238 (362)
+..++......+.+.++|++.+.++...++..+.++..+-..+..
T Consensus 204 i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 204 IEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444556667778888888888888888887766666643
No 176
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.16 E-value=2.5 Score=43.27 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=35.6
Q ss_pred Ccccccccccc-ccceEEeCCCCcccCccccccc----CCcCccccccccce
Q 018028 310 GRMLCRRCGEK-ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDAS 356 (362)
Q Consensus 310 ~~~~C~iC~~~-~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~~ 356 (362)
....|.||.+- ...+...-|.|. +|..|.++. -..||.||....+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 44589999984 344556679999 899998875 68999999876543
No 177
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=41.07 E-value=15 Score=37.76 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=38.0
Q ss_pred CccccccccccccceEE-eCCCCcccCccccccc---CCcCccccccccceEE
Q 018028 310 GRMLCRRCGEKESSVLL-LPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLH 358 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlL-lPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~ 358 (362)
.+..|.+|..--.+-+. ..|+|. .|..|.... ...||.|+...+..-.
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred ccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhc
Confidence 44589999998777777 599999 799998775 4689999887765433
No 178
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=40.83 E-value=3.9e+02 Score=30.40 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=17.0
Q ss_pred HHhHHHHHhhhHHHHHHHHHHHH
Q 018028 198 QEGVANKLKEKDEEIHRMRKLNW 220 (362)
Q Consensus 198 E~~~~~rLReKEeEIera~rrn~ 220 (362)
...+.+|||+|+-|-+.+-.|+.
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~g 494 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKG 494 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhh
Confidence 45678999999988776655543
No 179
>PRK14140 heat shock protein GrpE; Provisional
Probab=40.75 E-value=84 Score=29.58 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=12.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELEEQRKRQ 189 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~RqRh 189 (362)
.+||. +..+.+.++..+++.+.+.
T Consensus 37 ~~~~~-l~~~i~~l~~ei~elkd~~ 60 (191)
T PRK14140 37 ELLDE-EQAKIAELEAKLDELEERY 60 (191)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 45555 4444555555555544333
No 180
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=40.57 E-value=1.5e+02 Score=21.82 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018028 207 EKDEEIHRMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 207 eKEeEIera~rrn~ELEErlrql~~E 232 (362)
+.+.++..+...|..|...+..|..|
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455666666666666666666543
No 181
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=40.41 E-value=1.6e+02 Score=26.48 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 209 DEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 209 EeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
++-++....-...++..+.-+..|...++.+++..+..+..|+..|...+...
T Consensus 39 ~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 39 EEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666666777777777888888888899999999999999999988764
No 182
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.09 E-value=76 Score=24.20 Aligned_cols=32 Identities=19% Similarity=0.094 Sum_probs=18.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 236 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~~E~QaW 236 (362)
+.+++.|++.+.+++.++++..+++..|-+.+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666665555555
No 183
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.43 E-value=2.2e+02 Score=27.49 Aligned_cols=23 Identities=17% Similarity=0.318 Sum_probs=9.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVK 227 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlr 227 (362)
|++|+.+++++..+..+|..+..
T Consensus 167 l~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 167 LEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 184
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=39.39 E-value=8.7 Score=39.50 Aligned_cols=42 Identities=29% Similarity=0.726 Sum_probs=30.2
Q ss_pred cccccccc----ccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 313 LCRRCGEK----ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 313 ~C~iC~~~----~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
.|..|.+. ..+..=.|||-. +|..|...+ ...||.||...+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 48888773 334444566655 799998876 7999999987654
No 185
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=39.31 E-value=1.8e+02 Score=22.44 Aligned_cols=47 Identities=23% Similarity=0.467 Sum_probs=32.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLN 219 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn 219 (362)
.-||.||.. ||.-|+++. .+++..+-..-.+-|..+-.|+|..+|+.
T Consensus 7 ~~~d~yI~~----Lk~kLd~Kk----~Eil~~ln~EY~kiLk~r~~~lEevKrk~ 53 (56)
T PF08112_consen 7 STIDKYISI----LKSKLDEKK----SEILSNLNMEYEKILKQRRKELEEVKRKA 53 (56)
T ss_pred hhHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778765 666777766 45666666666677777777888777653
No 186
>PRK10963 hypothetical protein; Provisional
Probab=39.25 E-value=95 Score=29.32 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018028 212 IHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 212 Iera~rrn~ELEErlrql 229 (362)
+++.+.||.+||++++++
T Consensus 46 ~~~LR~r~~~Le~~l~~L 63 (223)
T PRK10963 46 MARQRNHIHVLEEEMTLL 63 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444455554444
No 187
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=39.05 E-value=2.9e+02 Score=24.78 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=34.6
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHhh
Q 018028 153 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQS--RMLISAIQEGVANKLKE 207 (362)
Q Consensus 153 ~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~--r~Ll~avE~~~~~rLRe 207 (362)
|=+|...|.++..++|.= .+.|+..|.+.-+.+. ..++..+......+.+.
T Consensus 20 gC~i~~~L~k~~~~v~~~----i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~ 72 (146)
T PF08702_consen 20 GCGIQDFLDKYERDVDKD----IQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHccchHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 456788888888888764 4567777777666554 45666666666666655
No 188
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=39.05 E-value=2.8e+02 Score=24.65 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHH--
Q 018028 172 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANT-- 249 (362)
Q Consensus 172 ~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~-- 249 (362)
+++.=|+=+.=...|--.+.+-+..+| .+..++|.||..+.++|..||+.|.++...-+.-+..+...+.....
T Consensus 1 Km~~lk~E~d~a~~r~e~~e~~~K~le----~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 1 KMQALKLEADNAQDRAEELEAKVKQLE----QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q ss_pred -HHHHHHHH
Q 018028 250 -LRSNLEQV 257 (362)
Q Consensus 250 -Lra~LeQ~ 257 (362)
|...++++
T Consensus 77 ~l~rriq~L 85 (143)
T PF12718_consen 77 QLNRRIQLL 85 (143)
T ss_pred HHHhhHHHH
No 189
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.03 E-value=4.7e+02 Score=27.24 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=33.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQI-----------WRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~Qa-----------Wq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
+--+|||+|-..++|..+|--....-|..|-|+ -|..--.-|+.+.+|--++.-+|+
T Consensus 155 ~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 155 QECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888877666666566666666665 222222225566665555544444
No 190
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=38.87 E-value=1.5e+02 Score=27.68 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 018028 212 IHRMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 212 Iera~rrn~ELEErlrql~~E 232 (362)
|+.+.++..+|++++.++..|
T Consensus 148 i~~a~~~~~e~~~~l~~l~~e 168 (176)
T PF12999_consen 148 IEEAKKKREELEKKLEELEKE 168 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 191
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=38.85 E-value=3.1e+02 Score=25.73 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=33.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018028 202 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 202 ~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~ 239 (362)
-.|++..+.+|..+.-.+..|+.|..++..|-+.|...
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999865
No 192
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=38.83 E-value=2.3e+02 Score=23.66 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~E 232 (362)
.+|+.||.++......|...+.++...
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444433
No 193
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.80 E-value=3.4e+02 Score=25.55 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=13.4
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 228 SLFVENQIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 228 ql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
++..+.+.++..-..-+.....-|..+-+.+...
T Consensus 123 ~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 123 ELQNELEERKQRLSQLQSQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444433333333333444444444443
No 194
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=38.65 E-value=96 Score=26.94 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--HhhhHHHHHHHHHHHHHHHHHH
Q 018028 181 ELEEQRKRQSRMLISAIQEGVANK--LKEKDEEIHRMRKLNWVLQERV 226 (362)
Q Consensus 181 ~LeE~RqRh~r~Ll~avE~~~~~r--LReKEeEIera~rrn~ELEErl 226 (362)
.++++-+|+.+.++.-.+ ++++ +-+-.++|+++.++...||+.+
T Consensus 61 e~e~K~~r~i~~ml~~~~--~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 61 ELEEKIPRKIEEMLSDLE--VARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred hHHHhhhHHHHHHHhhcc--ccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666555 2222 2333345555555555555443
No 195
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.58 E-value=5.9e+02 Score=28.22 Aligned_cols=93 Identities=26% Similarity=0.337 Sum_probs=57.7
Q ss_pred HHHHHH------HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHH------HhhhHHHHHHHHHH--------
Q 018028 165 SEIDRY------IAQHTEKVILELEEQR------KRQSRMLISAIQEGVANK------LKEKDEEIHRMRKL-------- 218 (362)
Q Consensus 165 ~EID~~------i~~q~ErLR~~LeE~R------qRh~r~Ll~avE~~~~~r------LReKEeEIera~rr-------- 218 (362)
.|||.| |+.++..|+..+.|+- +-|+.+|-++++..-.+. |-+|.+|+-++.+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367766 4566778888877765 456667776666432221 55666777666544
Q ss_pred -----HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 018028 219 -----NWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 219 -----n~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~ 257 (362)
+.+.-+++++|..|.--..+.-.-..+.+.-|=.-|.++
T Consensus 411 ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkev 454 (654)
T KOG4809|consen 411 DDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEV 454 (654)
T ss_pred HhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888887777776655555554443333333
No 196
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=38.49 E-value=4.1e+02 Score=26.45 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=52.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh---hhHHH
Q 018028 171 IAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQT---NEATA 247 (362)
Q Consensus 171 i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~---nEA~A 247 (362)
|..+...+...+++.=.+++..++.+.+.. ..++ .++..+..+...|.+.+-++...++.+...+.. +...+
T Consensus 19 L~~~~~~l~~ql~~La~~~y~~fi~~~~~~--~~i~---~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~ 93 (338)
T PF04124_consen 19 LSEEIASLDAQLQSLAFRNYKTFIDNAECS--SDIR---QELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKA 93 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888889999999999886643 2333 355566666666777777777777777666542 23344
Q ss_pred HHHHHHHHHHH
Q 018028 248 NTLRSNLEQVL 258 (362)
Q Consensus 248 ~~Lra~LeQ~l 258 (362)
..+-.+.++++
T Consensus 94 ~~~l~~~~~l~ 104 (338)
T PF04124_consen 94 SLLLENHDRLL 104 (338)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 197
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=38.30 E-value=4.6e+02 Score=26.95 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Q 018028 188 RQSRMLISAIQEGVANKLKEKDEEIHRMRKL 218 (362)
Q Consensus 188 Rh~r~Ll~avE~~~~~rLReKEeEIera~rr 218 (362)
.+...+-..+..++.++|..+..+++.+..+
T Consensus 312 q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~r 342 (438)
T PRK00286 312 QRLDRLQQRLQRALERRLRLAKQRLERLSQR 342 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666667777777776665443
No 198
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=37.94 E-value=6.3 Score=42.57 Aligned_cols=44 Identities=25% Similarity=0.682 Sum_probs=35.4
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc--------CCcCcccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL--------IGSCPVCNFVVD 354 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l--------~~~CPvCR~~i~ 354 (362)
+...|..|.+..-+-+.-.|.|. .|..|-... .-+||+|....+
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 34489999999999999999888 899997432 579999986543
No 199
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.66 E-value=8 Score=35.49 Aligned_cols=26 Identities=38% Similarity=0.922 Sum_probs=21.6
Q ss_pred cCcccccccCCcCccccccccceEEE
Q 018028 334 LCTVCGSCLIGSCPVCNFVVDASLHV 359 (362)
Q Consensus 334 lC~~C~~~l~~~CPvCR~~i~~~V~V 359 (362)
.|..|.......||-|..+|.+..+|
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 57777777678999999999998765
No 200
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=37.58 E-value=2.1e+02 Score=28.44 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=38.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQ 223 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELE 223 (362)
.+|.+-|+.-+..+...++..++.-.. +.+=|...-.++..|..|++|..+|...|+
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~~l~~--l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQQLNN--LASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777677777666666543222 445556666778888889999988876654
No 201
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=37.49 E-value=2.3e+02 Score=26.25 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=18.0
Q ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 198 QEGVANKLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 198 E~~~~~rLReKEeEIera~rrn~ELEErlrql 229 (362)
+..|.=+|=+--.|||.+..+...||+++.++
T Consensus 113 d~vvsYqll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 113 DDVVSYQLLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333446666666666777666654
No 202
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=37.31 E-value=3.9e+02 Score=26.92 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhHH
Q 018028 219 NWVLQERVKSLFVENQI 235 (362)
Q Consensus 219 n~ELEErlrql~~E~Qa 235 (362)
..+|||+.++++.|-+.
T Consensus 118 ~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 118 ISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67899999999877654
No 203
>PF14282 FlxA: FlxA-like protein
Probab=37.13 E-value=2e+02 Score=24.28 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hh---HHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 209 DEEIHRMRKLNWVLQERVKSLFV-EN---QIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 209 EeEIera~rrn~ELEErlrql~~-E~---QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
+..|+++.++...|++.|+.|.. +. ..-+...+.=.+-+..|.++|.++..+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888876 22 3334444445555666777777666544
No 204
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=36.61 E-value=34 Score=34.45 Aligned_cols=41 Identities=22% Similarity=0.453 Sum_probs=24.4
Q ss_pred cccccccccccceEEeCCCC----cccCccccccc---CCcCcccccc
Q 018028 312 MLCRRCGEKESSVLLLPCRH----LCLCTVCGSCL---IGSCPVCNFV 352 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrH----lclC~~C~~~l---~~~CPvCR~~ 352 (362)
..|++|++.+..-++..-++ +..|.-|.... -..||.|...
T Consensus 188 ~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 188 QFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 46888888875443322111 13577776654 5778888763
No 205
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=36.40 E-value=2.2e+02 Score=22.94 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=18.7
Q ss_pred CcccchHHHHHHHHhhhHHHHHHHHHh
Q 018028 148 FSSLLDQDIIFRLQQQQSEIDRYIAQH 174 (362)
Q Consensus 148 ~~s~l~~~l~~~l~qQ~~EID~~i~~q 174 (362)
+.+..++.|+.-|+.-++|++++=-.+
T Consensus 7 ~s~~p~~~Ls~vl~~LqDE~~hm~~e~ 33 (79)
T PF06657_consen 7 PSQSPGEALSEVLKALQDEFGHMKMEH 33 (79)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444557778888888888888764443
No 206
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=36.38 E-value=1.5e+02 Score=26.86 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 018028 214 RMRKLNWVLQERVK 227 (362)
Q Consensus 214 ra~rrn~ELEErlr 227 (362)
.+.+|..+|+.+|+
T Consensus 58 ~~e~RI~~L~~~L~ 71 (158)
T PRK05892 58 RLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 207
>PHA03415 putative internal virion protein; Provisional
Probab=36.11 E-value=1.1e+02 Score=35.10 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=47.6
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHhhhHHHHHH
Q 018028 153 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQ-----------RKRQSRMLISAIQEGVANKLKEKDEEIHR 214 (362)
Q Consensus 153 ~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~-----------RqRh~r~Ll~avE~~~~~rLReKEeEIer 214 (362)
.|.-++.+..-+.|.|-+++.-.|-|-++|.|+ |.+.++.--.+.|+.+.+-|-..|+|--+
T Consensus 298 n~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~ 370 (1019)
T PHA03415 298 NDNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSR 370 (1019)
T ss_pred CccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHh
Confidence 455677888889999999999999999999995 45567777788888888887444444333
No 208
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.87 E-value=9.5e+02 Score=29.54 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=30.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQ 256 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ 256 (362)
+.....+++.+..+..+.++.+..+..+...++......+.....|+.++..
T Consensus 350 i~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLae 401 (1486)
T PRK04863 350 IERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLAD 401 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555566666666666666666666666666666655554
No 209
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=34.81 E-value=1.5e+02 Score=31.39 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 018028 244 EATANTLRSNLEQVLAHV 261 (362)
Q Consensus 244 EA~A~~Lra~LeQ~l~q~ 261 (362)
|..+-...-.-.|++.+.
T Consensus 345 e~LslrI~~svrqLL~rL 362 (497)
T COG3851 345 EQLSLRIYDSVRQLLGRL 362 (497)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333333333344444443
No 210
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=34.75 E-value=92 Score=24.37 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=29.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~ 238 (362)
..|....|++++.++..++++.+.+|..|-..|..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35677789999999999999999999888887754
No 211
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.69 E-value=1.7e+02 Score=29.64 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=35.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018028 167 IDRYIAQHTEKVILELEEQRKRQ--SRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERV 226 (362)
Q Consensus 167 ID~~i~~q~ErLR~~LeE~RqRh--~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErl 226 (362)
+.|.|-.++|.|-+..+-.++.- .+.|.+ -++|+.||.+||.|.++|.-+|.|..
T Consensus 10 ~~~~i~k~nee~~~~~~~~~k~~e~~qkl~s-----r~~~~~ekke~i~r~n~k~~d~v~~~ 66 (359)
T KOG4398|consen 10 LKQTICKGNEEMEKNSEGLLKTKEKNQKLYS-----RAQRHQEKKEKIQRHNRKLGDLVEKK 66 (359)
T ss_pred HHHHHhcCcHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcchHHHHH
Confidence 45666667777777666655431 233333 35788999999999988766665543
No 212
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=34.52 E-value=4.7e+02 Score=25.87 Aligned_cols=100 Identities=25% Similarity=0.304 Sum_probs=68.6
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HhhhHHHHHHHHHHHHHHH------HHHHHHHH
Q 018028 159 RLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANK-LKEKDEEIHRMRKLNWVLQ------ERVKSLFV 231 (362)
Q Consensus 159 ~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~r-LReKEeEIera~rrn~ELE------Erlrql~~ 231 (362)
-+..-.--||.+.--.+++.-..|++.|+.|..++..+++...... |-+|-+=+-...|.|.+|+ |++-.+..
T Consensus 111 ~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~ 190 (247)
T KOG3976|consen 111 AIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQLEATYREQLVRVAK 190 (247)
T ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999999999999999998654332 2333333444556665554 45566778
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 018028 232 ENQIWRDLAQTNEATANTLRSNLEQVLAH 260 (362)
Q Consensus 232 E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q 260 (362)
|.-.|-+.=.+.|++...+ +-+|++..
T Consensus 191 E~K~~lDy~v~~e~~~rr~--eqe~l~ks 217 (247)
T KOG3976|consen 191 EVKRRLDYWVETEASKRRL--EQEQLLKS 217 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 8888887777777755422 33345443
No 213
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=34.31 E-value=6e+02 Score=27.07 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=6.0
Q ss_pred chHHHHHHHHhhhH
Q 018028 152 LDQDIIFRLQQQQS 165 (362)
Q Consensus 152 l~~~l~~~l~qQ~~ 165 (362)
+...+...++++..
T Consensus 293 ~~~~~~~~le~~~~ 306 (582)
T PF09731_consen 293 LREELEQELEEKRA 306 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 214
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=34.27 E-value=1.3e+02 Score=29.51 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=25.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
-++|+.+.||.++-+.-..||-||+.|.
T Consensus 71 ~~IRdLNDeINkL~rEK~~WE~rI~~LG 98 (255)
T PF06246_consen 71 FQIRDLNDEINKLIREKRHWERRIKELG 98 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4589999999999999999999999886
No 215
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=33.96 E-value=2.8e+02 Score=25.27 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Q 018028 164 QSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKL 218 (362)
Q Consensus 164 ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rr 218 (362)
-.||+.+=....+-|+..|.+.-+.+-...-..+|....++..+|+.-|+++.+.
T Consensus 93 E~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~~ 147 (154)
T PF14738_consen 93 EEEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEKE 147 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578887777788888888888888888888888888888888888888877653
No 216
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.88 E-value=5e+02 Score=26.01 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=31.5
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Q 018028 194 ISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF-VENQIWRDLA 240 (362)
Q Consensus 194 l~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~-~E~QaWq~~A 240 (362)
+..-|....+.|++.|.|-+.+.+...+|++..+.+. .|.+.|+...
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n 102 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYN 102 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666677777777777777777777777765 4456676653
No 217
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=33.86 E-value=2.2e+02 Score=23.57 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=10.6
Q ss_pred HHhhhHHHHHHHHHhHHHH
Q 018028 160 LQQQQSEIDRYIAQHTEKV 178 (362)
Q Consensus 160 l~qQ~~EID~~i~~q~ErL 178 (362)
+..--.|+|.+|.-..+|.
T Consensus 32 v~~kLneLd~Li~eA~~r~ 50 (109)
T PF03980_consen 32 VVEKLNELDKLIEEAKERK 50 (109)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 4444456677666654443
No 218
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=33.76 E-value=5e+02 Score=26.00 Aligned_cols=98 Identities=23% Similarity=0.324 Sum_probs=57.6
Q ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhH--
Q 018028 157 IFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQ-- 234 (362)
Q Consensus 157 ~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~Q-- 234 (362)
-.+||+|+. -|+-++.++...-+++|+-....+=.++. .|..+|-+....-.+....|.+|.++++.+..-..
T Consensus 80 CRELQk~Nk----~lkeE~~~~~~eee~kR~el~~kFq~~L~-dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~r 154 (309)
T PF09728_consen 80 CRELQKQNK----KLKEESKRRAREEEEKRKELSEKFQATLK-DIQAQMEEQSERNIKLREENEELREKLKSLIEQYELR 154 (309)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 23344444444455555544444433333 34466777777777788888889888888775554
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 235 --IWRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 235 --aWq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
.|..+-+..+..+.-+.+.|+++..
T Consensus 155 E~~~~~~~k~keLE~Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 155 EEHFEKLLKQKELEVQLAEAKLEQQQE 181 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666544
No 219
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=33.71 E-value=12 Score=33.67 Aligned_cols=45 Identities=31% Similarity=0.721 Sum_probs=30.7
Q ss_pred cccccccccccceEEe-C--CCCcccCccccccc------CCcCccccccccce
Q 018028 312 MLCRRCGEKESSVLLL-P--CRHLCLCTVCGSCL------IGSCPVCNFVVDAS 356 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLl-P--CrHlclC~~C~~~l------~~~CPvCR~~i~~~ 356 (362)
..|-||.+...+-=|| | |--.-+|..|...+ ...||+|+....++
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3577777655554443 2 33366899997765 69999999887765
No 220
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=33.57 E-value=2.3e+02 Score=25.70 Aligned_cols=48 Identities=29% Similarity=0.285 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018028 176 EKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERV 226 (362)
Q Consensus 176 ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErl 226 (362)
-.|-..|-+-|-.|+|+.|. ...-..+++|.++|+.+++...+.++.|
T Consensus 114 ~NmhhllNeyRPhQARetLi---~~me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 114 INMHHLLNEYRPHQARETLI---MMMEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp HHHHHHHHHTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667788899999996543 3344678899999999999888877765
No 221
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=33.33 E-value=16 Score=33.71 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=21.3
Q ss_pred ccccccccccccceEEeCCCCcccCcccccccCCcCccccccccceE
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASL 357 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~~CPvCR~~i~~~V 357 (362)
.+.|++| ||+ |.. .. ...||+|..++..+.
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~-P~~CPiCga~k~~F~ 163 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EA-PEVCPICGAPKEKFE 163 (166)
T ss_pred EEEcCCC------------CCc--ccC--CC-CCcCCCCCChHHHhh
Confidence 5678876 665 344 33 789999999876654
No 222
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=33.25 E-value=1.1e+02 Score=24.02 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=17.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 018028 201 VANKLKEKDEEIHRMRKLNWVLQ 223 (362)
Q Consensus 201 ~~~rLReKEeEIera~rrn~ELE 223 (362)
=+.-|+..-+||+++.++|.+|.
T Consensus 19 H~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 19 HAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 33445556669999999999886
No 223
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.17 E-value=9.4e+02 Score=29.01 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=13.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~ 230 (362)
+++++.++++......++++++..+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~le 310 (1353)
T TIGR02680 285 LGRARDELETAREEERELDARTEALE 310 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554
No 224
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=32.96 E-value=2.4e+02 Score=21.99 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~ 257 (362)
+++.+...+..++++++..++.-..+....-+.+..-...+.+++..+
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554443333333333444444444444433
No 225
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.69 E-value=1.9e+02 Score=26.59 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=14.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 236 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~~E~QaW 236 (362)
+++++..|..+...+..|+++++++..|-...
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek 142 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELKEK 142 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555554444333
No 226
>PHA02562 46 endonuclease subunit; Provisional
Probab=32.58 E-value=6e+02 Score=26.52 Aligned_cols=29 Identities=17% Similarity=0.066 Sum_probs=18.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
++.+..+.||+++..+..++++.++++..
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 34455566777777776666666666654
No 227
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=32.54 E-value=6.5e+02 Score=26.93 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=41.2
Q ss_pred HHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 160 LQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEG------VANKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 160 l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~------~~~rLReKEeEIera~rrn~ELEErlrql~~E~ 233 (362)
|++-+.|-|+++..++.---.+|+-+...|-..+-.-+|.. +-..=|+--+|++...|...-|-|+.-|-+-|+
T Consensus 365 LekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEn 444 (593)
T KOG4807|consen 365 LEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLEN 444 (593)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677666655545555555555555444443321 112224445677777777776766665555554
Q ss_pred HH
Q 018028 234 QI 235 (362)
Q Consensus 234 Qa 235 (362)
.+
T Consensus 445 ah 446 (593)
T KOG4807|consen 445 AH 446 (593)
T ss_pred HH
Confidence 43
No 228
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.48 E-value=14 Score=33.11 Aligned_cols=26 Identities=31% Similarity=0.899 Sum_probs=18.4
Q ss_pred cCcccccccCCcCccccccccceEEE
Q 018028 334 LCTVCGSCLIGSCPVCNFVVDASLHV 359 (362)
Q Consensus 334 lC~~C~~~l~~~CPvCR~~i~~~V~V 359 (362)
.|..|.......||+|..+|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 34555444367899999999987655
No 229
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.07 E-value=7e+02 Score=27.18 Aligned_cols=15 Identities=7% Similarity=0.220 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 018028 212 IHRMRKLNWVLQERV 226 (362)
Q Consensus 212 Iera~rrn~ELEErl 226 (362)
|+.+.+...+++..+
T Consensus 451 ~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 451 LETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 230
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.06 E-value=5.4e+02 Score=25.90 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=10.5
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHH
Q 018028 208 KDEEIHRMRKL----NWVLQERVKSL 229 (362)
Q Consensus 208 KEeEIera~rr----n~ELEErlrql 229 (362)
.+..+|++.|- ...+|.|+.|+
T Consensus 120 aNDdLErakRati~sleDfeqrLnqA 145 (333)
T KOG1853|consen 120 ANDDLERAKRATIYSLEDFEQRLNQA 145 (333)
T ss_pred hccHHHHhhhhhhhhHHHHHHHHHHH
Confidence 33556666553 23444455443
No 231
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.94 E-value=3.7e+02 Score=29.23 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 018028 174 HTEKVILELEEQRKRQSRM 192 (362)
Q Consensus 174 q~ErLR~~LeE~RqRh~r~ 192 (362)
..|+++..+++++++|...
T Consensus 165 ~~~~~~~~~k~~~~~w~~~ 183 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKR 183 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777643
No 232
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.61 E-value=4.2e+02 Score=28.43 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=32.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHH-HHHHHH
Q 018028 169 RYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLN-WVLQER 225 (362)
Q Consensus 169 ~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn-~ELEEr 225 (362)
++|+.++||||..|..+.+.+...+....++.+ -.| +|.++..|+. .|+|-|
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~--~~r---een~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV--DHR---EENERLQRKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHH---HHHHHHHHHHHHHHHHH
Confidence 367888889999988888887777666555442 122 4555655543 344433
No 233
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.13 E-value=3.6e+02 Score=25.01 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhHH--HHHHHHHhHHHHHHHHHHH
Q 018028 154 QDIIFRLQQQQSE--IDRYIAQHTEKVILELEEQ 185 (362)
Q Consensus 154 ~~l~~~l~qQ~~E--ID~~i~~q~ErLR~~LeE~ 185 (362)
+++.+.|++.... .+.-++.++++|+..+++.
T Consensus 83 ~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l 116 (161)
T TIGR02894 83 QDVISFLQNLKTTNPSDQALQKENERLKNQNESL 116 (161)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 4466666665543 3444455555554444433
No 234
>PRK02224 chromosome segregation protein; Provisional
Probab=31.02 E-value=7.9e+02 Score=27.44 Aligned_cols=11 Identities=45% Similarity=1.135 Sum_probs=6.2
Q ss_pred CcCcccccccc
Q 018028 344 GSCPVCNFVVD 354 (362)
Q Consensus 344 ~~CPvCR~~i~ 354 (362)
..||+|..++.
T Consensus 452 ~~Cp~C~r~~~ 462 (880)
T PRK02224 452 GKCPECGQPVE 462 (880)
T ss_pred ccCCCCCCcCC
Confidence 45666665544
No 235
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=30.74 E-value=6.7e+02 Score=27.82 Aligned_cols=89 Identities=11% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHH----------------HHHHHHHHHHH
Q 018028 167 IDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLN----------------WVLQERVKSLF 230 (362)
Q Consensus 167 ID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn----------------~ELEErlrql~ 230 (362)
+|.|+..+.++ |..-.++-..+...=|..++ ++|.+.|.+++.-+++| .+|+.++..+.
T Consensus 250 a~~Yi~~~l~~-k~~~a~~a~~fL~~qL~~l~----~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 250 ANNYLQQNIAR-QAAQDSQSLEFLQRQLPEVR----SELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 018028 231 VENQIWRDLAQTNEATANTLRSNLEQVLAH 260 (362)
Q Consensus 231 ~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q 260 (362)
..-.....+-.++...+..|+.+++++-.+
T Consensus 325 ~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~ 354 (726)
T PRK09841 325 FREAEISQLYKKDHPTYRALLEKRQTLEQE 354 (726)
T ss_pred HHHHHHHHHhcccCchHHHHHHHHHHHHHH
No 236
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.69 E-value=78 Score=37.01 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 171 IAQHTEKVILELEEQRKRQSRMLISAI-------------QEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 171 i~~q~ErLR~~LeE~RqRh~r~Ll~av-------------E~~~~~rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
|+.++.|||..|..++ +-... -..+..||.|+|.+++.+++ .|+|+|++.++
T Consensus 366 LreEv~rLksll~~~~------~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~e---tW~EKl~~aEa 430 (1221)
T KOG0245|consen 366 LREEVARLKSLLRAQG------LGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNE---TWEEKLREAEA 430 (1221)
T ss_pred HHHHHHHHHHHHhccc------cccccccCCcccccccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 237
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=30.14 E-value=25 Score=22.15 Aligned_cols=19 Identities=32% Similarity=0.882 Sum_probs=12.4
Q ss_pred Cccccccc---CCcCccccccc
Q 018028 335 CTVCGSCL---IGSCPVCNFVV 353 (362)
Q Consensus 335 C~~C~~~l---~~~CPvCR~~i 353 (362)
|..|...+ ...||.|..++
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 56666665 66788776653
No 238
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=29.61 E-value=3.8e+02 Score=23.39 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 018028 216 RKLNWVLQERVKSLFVENQIWRDLAQTNEATAN 248 (362)
Q Consensus 216 ~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~ 248 (362)
.....|....+.++..|-++|+.+-.+.+..+.
T Consensus 86 q~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i~ 118 (120)
T PF14931_consen 86 QALIAEKKMELERLRSEYESLQKVEQEQNELIQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444778888888888777776553
No 239
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=29.28 E-value=4e+02 Score=29.29 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HH--------HHhhHHHHHHHhhh--------hHHHHHHHHHHHHHHHhc
Q 018028 210 EEIHRMRKLNWVLQERVK-SL--------FVENQIWRDLAQTN--------EATANTLRSNLEQVLAHV 261 (362)
Q Consensus 210 eEIera~rrn~ELEErlr-ql--------~~E~QaWq~~A~~n--------EA~A~~Lra~LeQ~l~q~ 261 (362)
++++.+.+|-.+|+++++ ++ ..|.++||...+-+ ...-..|++.|.++....
T Consensus 522 arve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~~dp~y~eeK~RceYLhsKLaHIK~lI 590 (604)
T KOG4796|consen 522 ARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIRKDPNYMEEKQRCEYLHSKLAHIKTLI 590 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555 22 25778888876432 335567888888776654
No 240
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.23 E-value=1.9e+02 Score=27.99 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018028 211 EIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~ 230 (362)
.+++++.||.+||+++..+.
T Consensus 46 ql~r~R~~~~~Le~~l~~L~ 65 (218)
T COG3159 46 QLARLRNRIRELEEELAALM 65 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777766654
No 241
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=29.21 E-value=4.9e+02 Score=24.47 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHH
Q 018028 154 QDIIFRLQQQQSEIDRYIAQHTEKV 178 (362)
Q Consensus 154 ~~l~~~l~qQ~~EID~~i~~q~ErL 178 (362)
+-|..+|+++-.|-+.+|......|
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL 90 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASL 90 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999887764443
No 242
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=28.96 E-value=1.1e+02 Score=23.63 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHh
Q 018028 217 KLNWVLQERVKSLFVENQIWRDLAQ 241 (362)
Q Consensus 217 rrn~ELEErlrql~~E~QaWq~~A~ 241 (362)
.|.+.||.|+.+.+.+.+.-...++
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444443
No 243
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=28.78 E-value=3.4e+02 Score=28.37 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 188 RQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 188 Rh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql 229 (362)
|--..-+...|.....+.++++.++++..++..++|.++.++
T Consensus 327 ~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~ 368 (373)
T COG5019 327 REKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368 (373)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334455555555555666666666655555555555444
No 244
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.75 E-value=1.3e+02 Score=28.18 Aligned_cols=25 Identities=4% Similarity=-0.043 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELEEQRKRQS 190 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~RqRh~ 190 (362)
.|++. +..+.+.++..++|.+.+..
T Consensus 32 ~e~~~-l~~~l~~le~e~~elkd~~l 56 (185)
T PRK14139 32 DAAPA-LEAELAEAEAKAAELQDSFL 56 (185)
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34444 23345555555555544443
No 245
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=28.73 E-value=5.8e+02 Score=27.12 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=14.7
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018028 231 VENQIWRDLAQTNEATANTLRSNLEQVL 258 (362)
Q Consensus 231 ~E~QaWq~~A~~nEA~A~~Lra~LeQ~l 258 (362)
.+...|+...+-........+..|.+-.
T Consensus 214 ~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 214 RESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555555555555555555555544
No 246
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.72 E-value=6.4e+02 Score=26.60 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=4.9
Q ss_pred HHHHhhhHHHHH
Q 018028 158 FRLQQQQSEIDR 169 (362)
Q Consensus 158 ~~l~qQ~~EID~ 169 (362)
.+|++.+.|+.+
T Consensus 78 ~~l~~l~~~~~~ 89 (525)
T TIGR02231 78 KQIRELEAELRD 89 (525)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 247
>PLN03188 kinesin-12 family protein; Provisional
Probab=28.65 E-value=1.1e+03 Score=28.57 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018028 177 KVILELEEQRKRQSRMLISAIQEGVANKL--------KEKDEEIHRMRKLNWVLQERVKSLFVENQI 235 (362)
Q Consensus 177 rLR~~LeE~RqRh~r~Ll~avE~~~~~rL--------ReKEeEIera~rrn~ELEErlrql~~E~Qa 235 (362)
+++-++.|..++-.++-++-.|...++-| -|+|-|-+-.+..|.-|+-+||-.+...||
T Consensus 1132 ~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~a 1198 (1320)
T PLN03188 1132 RIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQA 1198 (1320)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 45555666665555554443333322222 234445555666687788777766655544
No 248
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=28.56 E-value=5.4e+02 Score=24.80 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
+|.++.+-+..++.+.++.+-+=--.|+..-..+|+.|.+-.-.++.+....
T Consensus 125 ~e~~k~~~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~ei 176 (225)
T KOG4848|consen 125 KEPEKFTFREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREI 176 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Confidence 4666777777777777777777777788777777777766666666665543
No 249
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.46 E-value=2.5e+02 Score=31.16 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHH-HhhhhHHHHHHHHHHHHHHH
Q 018028 209 DEEIHRMRKLNWVLQERVKSLFVEN--QIWRDL-AQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 209 EeEIera~rrn~ELEErlrql~~E~--QaWq~~-A~~nEA~A~~Lra~LeQ~l~ 259 (362)
+.+|+++.+.+.+|+.++.++..+. ..|.++ .+..+..++.|+.+|+.-..
T Consensus 442 ~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 442 KRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554332 334432 33345566667666665443
No 250
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=28.41 E-value=25 Score=30.06 Aligned_cols=44 Identities=27% Similarity=0.631 Sum_probs=27.0
Q ss_pred ccccccccccceEEeCCCC------cccCccccccc-------CCcCccccccccce
Q 018028 313 LCRRCGEKESSVLLLPCRH------LCLCTVCGSCL-------IGSCPVCNFVVDAS 356 (362)
Q Consensus 313 ~C~iC~~~~a~vlLlPCrH------lclC~~C~~~l-------~~~CPvCR~~i~~~ 356 (362)
.|--|.+.-.+--|.|=++ ..+|..|...+ ...||.|+++++-.
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~ 93 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPG 93 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCcc
Confidence 3444555544555555443 35677776654 57799999988754
No 251
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=28.23 E-value=4.7e+02 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Q 018028 212 IHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHVGG 263 (362)
Q Consensus 212 Iera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~~~ 263 (362)
.+.+..+..+|.++++.+ |+....+..++.+.+.....
T Consensus 71 ~~~l~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 71 IEEIKKELKELKEELTEL--------------SAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhCCC
Confidence 445555555555555444 33334456666676666655
No 252
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=27.97 E-value=3.6e+02 Score=23.29 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=39.1
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 159 RLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 159 ~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
.|+++...++.=+.....+++..+.+.++...+. .+++++..+..+++.......|+.-+-++.
T Consensus 12 ~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~--------~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie 75 (171)
T PF03357_consen 12 RLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKI--------YLKRKKRLEKQLEKLLNQLSNLESVLLQIE 75 (171)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555556666666666666444433 346666677788888877777777554443
No 253
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.95 E-value=1.8e+02 Score=22.09 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=24.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQ 241 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~ 241 (362)
.+.+.+.+|+++..+|.+|++.++++...-..=..+|+
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 35566678888888888888888888433333344443
No 254
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=27.45 E-value=3.6e+02 Score=22.49 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=20.6
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhHHH
Q 018028 152 LDQDIIFRLQQQQSEIDRYIAQHTEK 177 (362)
Q Consensus 152 l~~~l~~~l~qQ~~EID~~i~~q~Er 177 (362)
+-..|.+|.++|..-|-+|+++..+|
T Consensus 3 VH~aItaH~~Kq~~~~k~F~~Le~~R 28 (84)
T PF10752_consen 3 VHKAITAHSQKQHAIIKQFLQLEQQR 28 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999876443
No 255
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=27.14 E-value=8.9e+02 Score=26.82 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q 018028 219 NWVLQERVKSLFVENQIWRDLAQTNEATANTLR 251 (362)
Q Consensus 219 n~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lr 251 (362)
+.+|.+++-++..+-..|+......+.-+.+|.
T Consensus 197 ~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq 229 (617)
T PF15070_consen 197 KKELQKKLGELQEKLHNLKEKLELKSQEAQSLQ 229 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345666666666666666665544444344443
No 256
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.00 E-value=6.3e+02 Score=25.03 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018028 217 KLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVL 258 (362)
Q Consensus 217 rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l 258 (362)
....+++||++.+..|+--.-..-+--...+..|+..++.+-
T Consensus 163 ~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 163 AEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 334445556666666665544444444445556666555443
No 257
>PRK14157 heat shock protein GrpE; Provisional
Probab=26.98 E-value=1.7e+02 Score=28.41 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 018028 171 IAQHTEKVILELEEQRKRQSR 191 (362)
Q Consensus 171 i~~q~ErLR~~LeE~RqRh~r 191 (362)
+..+.+.++..++|.+.+..|
T Consensus 82 ~~~~l~~le~e~~e~kd~llR 102 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQR 102 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888766654
No 258
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.97 E-value=51 Score=38.34 Aligned_cols=49 Identities=24% Similarity=0.524 Sum_probs=35.2
Q ss_pred CccccccccccccceEEeC-CCC----cccCccccccc-CCcCccccccccceEEE
Q 018028 310 GRMLCRRCGEKESSVLLLP-CRH----LCLCTVCGSCL-IGSCPVCNFVVDASLHV 359 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlP-CrH----lclC~~C~~~l-~~~CPvCR~~i~~~V~V 359 (362)
..+.|..|+... .....| ||. ...|..|.... ...||-|....+....+
T Consensus 625 g~RfCpsCG~~t-~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~~s~~ 679 (1121)
T PRK04023 625 GRRKCPSCGKET-FYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPYSKR 679 (1121)
T ss_pred cCccCCCCCCcC-CcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCccceE
Confidence 456899999874 345566 774 46799997774 46799999887766544
No 259
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.92 E-value=8.8e+02 Score=26.71 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=16.9
Q ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 018028 231 VENQIWRDLAQTNEATANTLRSNLEQVLAH 260 (362)
Q Consensus 231 ~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q 260 (362)
.|-..-++.+..++..=..|-..++++..+
T Consensus 376 ~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 376 VDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555566666666666666665443
No 260
>PRK14155 heat shock protein GrpE; Provisional
Probab=26.91 E-value=1.7e+02 Score=27.84 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 018028 174 HTEKVILELEEQRKRQ 189 (362)
Q Consensus 174 q~ErLR~~LeE~RqRh 189 (362)
+.+.+...+++.+.+.
T Consensus 21 ~l~~le~e~~elkd~~ 36 (208)
T PRK14155 21 EIEALKAEVAALKDQA 36 (208)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544333
No 261
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.89 E-value=8.2e+02 Score=26.32 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Q 018028 176 EKVILELEEQRKRQSRMLISAIQ--EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSN 253 (362)
Q Consensus 176 ErLR~~LeE~RqRh~r~Ll~avE--~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~ 253 (362)
+.+-..|...|-+|.-.|.++-. ..+...|++|-.-++++.++...+++|...+..|-+.=+-.-..--+.+-.|+..
T Consensus 410 ~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~ 489 (507)
T PF05600_consen 410 EEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQ 489 (507)
T ss_pred HHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444455555555544322 2334557777777788877777777777776655544333322223333445555
Q ss_pred HHHHHHhc
Q 018028 254 LEQVLAHV 261 (362)
Q Consensus 254 LeQ~l~q~ 261 (362)
+++-+.+.
T Consensus 490 iE~~ISk~ 497 (507)
T PF05600_consen 490 IEADISKR 497 (507)
T ss_pred HHHHHHHH
Confidence 55555543
No 262
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=26.87 E-value=2.2e+02 Score=25.63 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018028 211 EIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 211 EIera~rrn~ELEErlrql 229 (362)
|-..++++-+.+|.|++.|
T Consensus 48 eY~aAk~~~~~~e~rI~~L 66 (157)
T PRK01885 48 DYIYGKKRLREIDRRVRFL 66 (157)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 263
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.79 E-value=5.6e+02 Score=24.35 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 018028 194 ISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 194 l~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~ 257 (362)
....+....++..+-++|-+.+..+...|+..++++...++.-+....+.+.....|..+++++
T Consensus 33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 264
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=26.73 E-value=5.4e+02 Score=24.18 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------------hhh-HHHHHHHHHHHHHHHHHHHHHH
Q 018028 177 KVILELEEQRKRQSRMLISAIQEGVANKL----------------KEK-DEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 177 rLR~~LeE~RqRh~r~Ll~avE~~~~~rL----------------ReK-EeEIera~rrn~ELEErlrql~ 230 (362)
+|+....+..++|...+|--+.+.+++=- ||| |+.|..-+|..+-||.|.||+.
T Consensus 95 kLqe~~A~e~~~~~~~~lleAkk~asqYQkEAeKCnsgmeTCEeAREkaEa~L~~e~KltalWE~RARq~G 165 (176)
T PF06364_consen 95 KLQEAVANENQRRADMALLEAKKMASQYQKEAEKCNSGMETCEEAREKAEAALVEERKLTALWEQRARQLG 165 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444445555555555444444443322 333 2455555666777888888774
No 265
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=26.63 E-value=2.1e+02 Score=25.78 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql 229 (362)
+|-..++++-+.+|.|++.|
T Consensus 45 aeY~aak~~~~~le~rI~~L 64 (156)
T TIGR01461 45 ADYQYGKKRLREIDRRVRFL 64 (156)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544
No 266
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=26.59 E-value=1.3e+02 Score=27.46 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=14.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql 229 (362)
|.|+.++...+.+|..+|+.+++.+
T Consensus 59 lsEak~~~~~~e~rI~~L~~~L~~A 83 (160)
T PRK06342 59 VNERRRQMARPLRDLRYLAARRRTA 83 (160)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccC
Confidence 4454555555556666666665443
No 267
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=26.43 E-value=3.4e+02 Score=25.40 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018028 214 RMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 214 ra~rrn~ELEErlrql~~E 232 (362)
.+.++..+|++.++...+|
T Consensus 157 e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 157 ELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3444555666666655544
No 268
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.36 E-value=3.4e+02 Score=21.68 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018028 208 KDEEIHRMRKLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 208 KEeEIera~rrn~ELEErlrql~~E~QaWq~~ 239 (362)
-..|++....+|.+|.+.-..|..|++--+..
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34488888888999998888998888877744
No 269
>PRK02119 hypothetical protein; Provisional
Probab=26.36 E-value=3.3e+02 Score=21.62 Aligned_cols=51 Identities=4% Similarity=-0.068 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 211 EIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
|+..+..|..+||.++.....-.+.--...-.....+..|+..|..+..+.
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666554443333333333333334466777777776655
No 270
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=26.26 E-value=1e+03 Score=27.22 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=70.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q 018028 172 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLR 251 (362)
Q Consensus 172 ~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lr 251 (362)
+.|.+.|+-.|..+. .|+..|.+-|| +..-+|.+|+..|++....+..+++-...+..|-..-.+...-.+..++.|+
T Consensus 321 r~hi~~lkesl~~ke-~~~~~Lqsdve-~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 321 RQHIEVLKESLRAKE-QEAEMLQSDVE-ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888887776554 45556777777 5567899999999999999999999999999999888888888888888898
Q ss_pred HHHHHHHHh
Q 018028 252 SNLEQVLAH 260 (362)
Q Consensus 252 a~LeQ~l~q 260 (362)
..++.+...
T Consensus 399 ~kie~Lee~ 407 (775)
T PF10174_consen 399 KKIENLEEQ 407 (775)
T ss_pred HHHHHHHHH
Confidence 886554433
No 271
>PRK10698 phage shock protein PspA; Provisional
Probab=26.25 E-value=5.7e+02 Score=24.27 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhH--HHHHHHHHHHHHHHHHHHH
Q 018028 154 QDIIFRLQQQQSEIDRYI---AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKD--EEIHRMRKLNWVLQERVKS 228 (362)
Q Consensus 154 ~~l~~~l~qQ~~EID~~i---~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKE--eEIera~rrn~ELEErlrq 228 (362)
...+..|+.|....+..+ +.+..+|+.-|++.|.++..-+...--..+.+++++.- .....+-.+--.+|+++.+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Q ss_pred HHHhhHH
Q 018028 229 LFVENQI 235 (362)
Q Consensus 229 l~~E~Qa 235 (362)
+.+++++
T Consensus 178 ~Ea~aea 184 (222)
T PRK10698 178 MEAEAES 184 (222)
T ss_pred HHHHHhH
No 272
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.15 E-value=6.6e+02 Score=24.97 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=12.4
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 018028 167 IDRYIAQHTEKVILELEEQR 186 (362)
Q Consensus 167 ID~~i~~q~ErLR~~LeE~R 186 (362)
--.|+..|.++++..|++..
T Consensus 171 a~~fl~~ql~~~~~~l~~ae 190 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATK 190 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33466666666666666655
No 273
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=26.11 E-value=81 Score=31.28 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q 018028 216 RKLNWVLQERVKSLFVENQIWRDLA 240 (362)
Q Consensus 216 ~rrn~ELEErlrql~~E~QaWq~~A 240 (362)
....++|+|+++++..|.++|..+.
T Consensus 163 ~~~i~~Lee~I~rLk~E~~~W~~~l 187 (301)
T PF08202_consen 163 EENIAELEEKIKRLKEERQAWAQLL 187 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4457899999999999999998876
No 274
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=25.90 E-value=4.9e+02 Score=27.92 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018028 211 EIHRMRKLNWVLQERVKS 228 (362)
Q Consensus 211 EIera~rrn~ELEErlrq 228 (362)
-+++++|...+||..+.|
T Consensus 180 ~leQLRre~V~lentlEQ 197 (552)
T KOG2129|consen 180 TLEQLRREAVQLENTLEQ 197 (552)
T ss_pred hHHHHHHHHHHHhhHHHH
Confidence 345566666666655544
No 275
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=4.6e+02 Score=25.60 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=36.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHH-hhHHHHHH
Q 018028 168 DRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRM--RKLNWVLQERVKSLFV-ENQIWRDL 239 (362)
Q Consensus 168 D~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera--~rrn~ELEErlrql~~-E~QaWq~~ 239 (362)
++-|..+.-+|-+.++-+|+++-. .+.| .|=|+-|+||+.. +++-.||+.-+..-.. -...|+.+
T Consensus 156 k~av~~~~mklfae~erkRk~~e~---r~~~----eRkr~re~eIeaeek~Kr~~E~qKnfEEsRd~Rv~sWrnF 223 (250)
T KOG1150|consen 156 KQAVYKQVMKLFAELERKRKELEA---RANE----ERKRQREEEIEAEEKRKREREWQKNFEESRDGRVGSWRNF 223 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 455666777777777777655432 2223 4556677888877 4445555533322221 12568776
No 276
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.57 E-value=7.2e+02 Score=25.22 Aligned_cols=48 Identities=23% Similarity=0.217 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~ 257 (362)
.|+..+.|.|.-|-|-...+..-.|--.-.++..|..++.|.++|...
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~ 107 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSC 107 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHH
Confidence 455566666666666665555555544445555566666665555444
No 277
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.57 E-value=3.6e+02 Score=25.08 Aligned_cols=9 Identities=44% Similarity=0.386 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 018028 211 EIHRMRKLN 219 (362)
Q Consensus 211 EIera~rrn 219 (362)
|.+..+||.
T Consensus 48 efeN~rkR~ 56 (178)
T PRK14161 48 EIDNTRKRL 56 (178)
T ss_pred HHHHHHHHH
Confidence 444444443
No 278
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=25.56 E-value=3.8e+02 Score=24.61 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQI 235 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~Qa 235 (362)
.|+...+-.+..+|++++.+..|++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666777777777777754
No 279
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=25.45 E-value=1.2e+03 Score=27.81 Aligned_cols=77 Identities=19% Similarity=0.139 Sum_probs=56.9
Q ss_pred HHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018028 165 SEIDRYIAQH--TEKVILELEEQRKRQSRMLISAIQ------EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 236 (362)
Q Consensus 165 ~EID~~i~~q--~ErLR~~LeE~RqRh~r~Ll~avE------~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaW 236 (362)
..=|+.+++. +-++-..|+|.+-+-+.++++..- ....++.++.+++|.++.+++++||+.-+.|..|...-
T Consensus 369 Lts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 369 LTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566544 556777888888888877776543 23555678888999999999999999999999888776
Q ss_pred HHHHh
Q 018028 237 RDLAQ 241 (362)
Q Consensus 237 q~~A~ 241 (362)
+..-.
T Consensus 449 ~~e~~ 453 (1195)
T KOG4643|consen 449 LEETS 453 (1195)
T ss_pred HHHHH
Confidence 66443
No 280
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.34 E-value=46 Score=21.66 Aligned_cols=18 Identities=33% Similarity=1.003 Sum_probs=11.6
Q ss_pred Cccccccc---CCcCcccccc
Q 018028 335 CTVCGSCL---IGSCPVCNFV 352 (362)
Q Consensus 335 C~~C~~~l---~~~CPvCR~~ 352 (362)
|.+|...+ ...||.|.-.
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCC
Confidence 56666665 6777777543
No 281
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.27 E-value=4.8e+02 Score=23.09 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=31.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018028 171 IAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 171 i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~ 239 (362)
|-.|.|++-..|+..|+.- -..++ .+-.+|-+-.+=.+.+.....++.+.+.++..+.+.-+..
T Consensus 48 v~kql~~vs~~l~~tKkhL----sqRId-~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKHL----SQRID-RVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4445566666666665322 22222 2234454444445555555555666665555544444433
No 282
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=25.21 E-value=6e+02 Score=24.22 Aligned_cols=95 Identities=22% Similarity=0.246 Sum_probs=49.6
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018028 155 DIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQS--RMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 155 ~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~--r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E 232 (362)
||....++++.-|.-|-.. -|.|+..++|...|-- ..=..++...+..+|...++||++ -.++..+|
T Consensus 94 dl~~ryek~K~vi~~~k~N-EE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~----------v~~~~~~e 162 (207)
T PF05010_consen 94 DLHKRYEKQKEVIEGYKKN-EETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQ----------VRSKHQAE 162 (207)
T ss_pred HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHH
Confidence 4666667777777666543 3556666655332211 111112222222333333334433 33456666
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 018028 233 NQIWRDLAQTNEATANTLRSNLEQVLAH 260 (362)
Q Consensus 233 ~QaWq~~A~~nEA~A~~Lra~LeQ~l~q 260 (362)
..+-|..-+-.+-.+.+|...|+|--..
T Consensus 163 ~~aLqa~lkk~e~~~~SLe~~LeQK~kE 190 (207)
T PF05010_consen 163 LLALQASLKKEEMKVQSLEESLEQKTKE 190 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666777777777777665543
No 283
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.19 E-value=6.2e+02 Score=26.35 Aligned_cols=13 Identities=0% Similarity=-0.021 Sum_probs=7.1
Q ss_pred EEEeecccceeec
Q 018028 35 FFFFSSSNMAVEA 47 (362)
Q Consensus 35 ~~~~~~~~mavea 47 (362)
+++.|-.+|-+.-
T Consensus 53 l~~~GTIp~~~~G 65 (365)
T KOG2391|consen 53 LQLDGTIPVPYQG 65 (365)
T ss_pred hhccCcccccccC
Confidence 4445556665554
No 284
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=25.19 E-value=1e+03 Score=26.92 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLE 255 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~Le 255 (362)
.+.+.+++.+..+..++++.+..+..+-..++......+.....++..++
T Consensus 871 ~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 920 (1164)
T TIGR02169 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555544444444444444433
No 285
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.14 E-value=6.9e+02 Score=24.89 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=17.4
Q ss_pred CcccchHHHHHH-HHhhhHHHHHHHHHh
Q 018028 148 FSSLLDQDIIFR-LQQQQSEIDRYIAQH 174 (362)
Q Consensus 148 ~~s~l~~~l~~~-l~qQ~~EID~~i~~q 174 (362)
+.+.+..++... ++.+..+|+.+-..+
T Consensus 20 ~~t~V~a~~~~~~i~~~ds~l~~~~~~~ 47 (265)
T COG3883 20 FLTTVFAALLSDKIQNQDSKLSELQKEK 47 (265)
T ss_pred hcchhhhhhhhhHHHhhHHHHHHHHHHH
Confidence 334455555554 888889998876544
No 286
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.79 E-value=9e+02 Score=26.06 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~ 231 (362)
|+|..|+|+..-+...|++-...+..
T Consensus 293 Reasle~Enlqmr~qqleeentelRs 318 (502)
T KOG0982|consen 293 REASLEKENLQMRDQQLEEENTELRS 318 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555554444443
No 287
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.68 E-value=4e+02 Score=27.66 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql 229 (362)
+.+.++.+...+|.++++++
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l 394 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKEL 394 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 288
>PRK14159 heat shock protein GrpE; Provisional
Probab=24.61 E-value=2e+02 Score=26.66 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=13.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 018028 166 EIDRYIAQHTEKVILELEEQRKRQS 190 (362)
Q Consensus 166 EID~~i~~q~ErLR~~LeE~RqRh~ 190 (362)
-.|.+=-...+.++..+.+.+.+..
T Consensus 23 ~~~~~~~~~i~~l~~e~~elkd~~l 47 (176)
T PRK14159 23 NLQNIEDVEQNKLQKDYDELKDKYM 47 (176)
T ss_pred hHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666554443
No 289
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=24.34 E-value=32 Score=39.19 Aligned_cols=45 Identities=20% Similarity=0.482 Sum_probs=27.5
Q ss_pred Ccccccccccc--ccceEEeCCCCccc----Ccccccc-----cCCcCcccccccc
Q 018028 310 GRMLCRRCGEK--ESSVLLLPCRHLCL----CTVCGSC-----LIGSCPVCNFVVD 354 (362)
Q Consensus 310 ~~~~C~iC~~~--~a~vlLlPCrHlcl----C~~C~~~-----l~~~CPvCR~~i~ 354 (362)
++..|+||+.. +-+=++.||+..-. =.+|--. ...+|-+|..++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 44578888864 56778888874421 1122111 1578999987764
No 290
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=24.26 E-value=1.2e+03 Score=27.51 Aligned_cols=22 Identities=9% Similarity=0.444 Sum_probs=10.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 018028 234 QIWRDLAQTNEATANTLRSNLE 255 (362)
Q Consensus 234 QaWq~~A~~nEA~A~~Lra~Le 255 (362)
..|+.+..+-++....++.+++
T Consensus 721 ~~~~~~~~~~d~~i~~i~~~i~ 742 (1201)
T PF12128_consen 721 AQWQELEAELDEQIEQIKQEIA 742 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554444444444444444
No 291
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.22 E-value=1.2e+03 Score=27.80 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHH------HHHHHHHHHHH-hHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHH
Q 018028 173 QHTEKVILELEEQRKR------QSRMLISAIQE-GVANKLKEKDEEIHRMRKLNWVLQERVK-------SLFVENQIWRD 238 (362)
Q Consensus 173 ~q~ErLR~~LeE~RqR------h~r~Ll~avE~-~~~~rLReKEeEIera~rrn~ELEErlr-------ql~~E~QaWq~ 238 (362)
.++|||+.-|.-.|.. +-+--..-.|. ..+.++.+++.||+...++..+++|..- .+..+-+.-+.
T Consensus 411 ~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~ 490 (1041)
T KOG0243|consen 411 EEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKS 490 (1041)
T ss_pred HHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHHHHHHHHh
Q 018028 239 LAQTNEATANTLRSNLEQVLAH 260 (362)
Q Consensus 239 ~A~~nEA~A~~Lra~LeQ~l~q 260 (362)
.-+.....-.++..+++|+..+
T Consensus 491 ~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 491 KLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 292
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.18 E-value=9.3e+02 Score=26.03 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=17.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 236 WRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 236 Wq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
-...-.+.+..+..|+.+|..++...
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 33444567778888888887776554
No 293
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=24.07 E-value=6.6e+02 Score=24.24 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEA 245 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA 245 (362)
.++..+......|++-...-..|+..|+..+.....
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666677788888887655544
No 294
>PRK14143 heat shock protein GrpE; Provisional
Probab=23.90 E-value=2.5e+02 Score=27.38 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018028 164 QSEIDRYIAQHTEKVILELEEQRKRQSR 191 (362)
Q Consensus 164 ~~EID~~i~~q~ErLR~~LeE~RqRh~r 191 (362)
..++.. +..+.+.++..+++.+.+..|
T Consensus 66 ~~~~~~-l~~el~~l~~e~~elkd~~lR 92 (238)
T PRK14143 66 AARLAQ-LEQELESLKQELEELNSQYMR 92 (238)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345554 556677788888877655444
No 295
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.89 E-value=1.2e+03 Score=27.36 Aligned_cols=25 Identities=12% Similarity=-0.019 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Q 018028 215 MRKLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 215 a~rrn~ELEErlrql~~E~QaWq~~ 239 (362)
......+++.++.++..+-..|+..
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1163)
T COG1196 798 LEEELEEAERRLDALERELESLEQR 822 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444443
No 296
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.84 E-value=7.2e+02 Score=24.64 Aligned_cols=85 Identities=18% Similarity=0.119 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHH----hhh---
Q 018028 175 TEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRM----RKLNWVLQERVKSLFVENQIWRDLA----QTN--- 243 (362)
Q Consensus 175 ~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera----~rrn~ELEErlrql~~E~QaWq~~A----~~n--- 243 (362)
..+.|..|+ +.-.++..++++|..--++|.+...|++.. ..+.+.|+.++.++.+.-+.=+... -|-
T Consensus 37 ~~~Vr~lLq--qy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~E 114 (258)
T PF15397_consen 37 ALKVRKLLQ--QYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHE 114 (258)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444555553 556788889999998888888888888655 4457778888888876665544322 111
Q ss_pred ---hH-HHHHHHHHHHHHHHhc
Q 018028 244 ---EA-TANTLRSNLEQVLAHV 261 (362)
Q Consensus 244 ---EA-~A~~Lra~LeQ~l~q~ 261 (362)
.+ -+..|..+|+++...+
T Consensus 115 YPvK~vqIa~L~rqlq~lk~~q 136 (258)
T PF15397_consen 115 YPVKAVQIANLVRQLQQLKDSQ 136 (258)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 11 4567888888887654
No 297
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.78 E-value=7.8e+02 Score=25.00 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 175 TEKVILELEEQRKRQSRMLISAIQ 198 (362)
Q Consensus 175 ~ErLR~~LeE~RqRh~r~Ll~avE 198 (362)
++.||..|..+|.-|..+=--.||
T Consensus 91 I~eLksQL~RMrEDWIEEECHRVE 114 (305)
T PF15290_consen 91 IDELKSQLARMREDWIEEECHRVE 114 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333444
No 298
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.76 E-value=2e+02 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhH
Q 018028 212 IHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEA 245 (362)
Q Consensus 212 Iera~rrn~ELEErlrql~~E~QaWq~~A~~nEA 245 (362)
+.++.++|.+|++++.++..+.+.-+....+|+.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~ 104 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENAR 104 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554444444444444443
No 299
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.70 E-value=6.3e+02 Score=23.92 Aligned_cols=70 Identities=13% Similarity=0.207 Sum_probs=48.5
Q ss_pred HHHHhhhHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhH-HHHHHHHHHHHHHHHHHH
Q 018028 158 FRLQQQQSEIDRYIAQ------HTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKD-EEIHRMRKLNWVLQERVK 227 (362)
Q Consensus 158 ~~l~qQ~~EID~~i~~------q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKE-eEIera~rrn~ELEErlr 227 (362)
.-|++|-.++.|||+- -.+.+-..|++.+.++...-+.+.++++..|-|--- -|-.++.|+...||..++
T Consensus 27 s~iK~qiRd~eRlLkk~~LP~~Vr~e~er~L~~Lk~ql~~~~l~~k~rkif~ryrkVRFFErkKaeR~irrLeK~~k 103 (199)
T KOG4484|consen 27 SSIKNQIRDLERLLKKKDLPPEVREELERKLQDLKKQLDNHELLAKERKIFKRYRKVRFFERKKAERSIRRLEKLIK 103 (199)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999982 245555677777777777778888988888754322 344556666666665554
No 300
>PRK14148 heat shock protein GrpE; Provisional
Probab=23.48 E-value=2.6e+02 Score=26.43 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018028 164 QSEIDRYIAQHTEKVILELEEQRKRQSR 191 (362)
Q Consensus 164 ~~EID~~i~~q~ErLR~~LeE~RqRh~r 191 (362)
..|++. +....+.++..+++.+.+..|
T Consensus 39 ~~e~~~-l~~~l~~l~~e~~elkd~~lR 65 (195)
T PRK14148 39 EEQLER-AKDTIKELEDSCDQFKDEALR 65 (195)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344555 455666677766666555544
No 301
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.41 E-value=4.8e+02 Score=30.87 Aligned_cols=44 Identities=25% Similarity=0.219 Sum_probs=31.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATAN 248 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~ 248 (362)
|.||-+-+.+++...-.|+.++..+.+|.+.|+..|....+-+.
T Consensus 193 lEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrd 236 (1195)
T KOG4643|consen 193 LEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRD 236 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34455555566666667778888999999999999877666443
No 302
>PLN02400 cellulose synthase
Probab=23.34 E-value=50 Score=38.58 Aligned_cols=44 Identities=23% Similarity=0.662 Sum_probs=29.5
Q ss_pred cccccccccc----ccceEEeCCCCc--ccCccccccc----CCcCcccccccc
Q 018028 311 RMLCRRCGEK----ESSVLLLPCRHL--CLCTVCGSCL----IGSCPVCNFVVD 354 (362)
Q Consensus 311 ~~~C~iC~~~----~a~vlLlPCrHl--clC~~C~~~l----~~~CPvCR~~i~ 354 (362)
.-.|.||++. .-.=+|+-|..- .+|..|..-= ...||.|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3489999985 222356666432 3799996331 689999998755
No 303
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=23.32 E-value=54 Score=30.30 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=25.7
Q ss_pred CccccccccccccceEEeCCCCcccC----ccccccc-----CCcCcccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLC----TVCGSCL-----IGSCPVCNFVVD 354 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC----~~C~~~l-----~~~CPvCR~~i~ 354 (362)
..+.|.||++.... ..-||+-...- .+|-... ...||+|+.+..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34589999988753 34566422110 1232221 689999998764
No 304
>PHA02107 hypothetical protein
Probab=23.30 E-value=1.9e+02 Score=27.26 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 196 AIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 196 avE~~~~~rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
-+=.-.+.||.|-|+||.++..+-+|.|+-++.+.
T Consensus 177 G~~~F~S~Ri~EID~EI~~LQA~RKEiEDN~K~IK 211 (216)
T PHA02107 177 GVFHFASVRISEIDEEIKELQARRKEIEDNIKSIK 211 (216)
T ss_pred HHhhhhhhhHhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33345678999999999999999999999888764
No 305
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=23.28 E-value=4.3e+02 Score=22.52 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=9.6
Q ss_pred HHHHhhhHHHHHHHHH
Q 018028 202 ANKLKEKDEEIHRMRK 217 (362)
Q Consensus 202 ~~rLReKEeEIera~r 217 (362)
..|+.+|..|++.+..
T Consensus 3 ~~ri~eKk~ELe~L~~ 18 (103)
T PF08654_consen 3 QARIAEKKAELEALKQ 18 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566667766666543
No 306
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=23.21 E-value=2.8e+02 Score=19.63 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=27.4
Q ss_pred HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 018028 224 ERVKSLFVENQIWRDLAQTNEATANTLRSNLEQ 256 (362)
Q Consensus 224 Erlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ 256 (362)
.+++.+..=|+-||..=.+.|+-+.+|.+.|..
T Consensus 2 ~ql~~v~e~N~qWq~YD~qRE~YV~~L~~rl~e 34 (35)
T PF12180_consen 2 QQLRDVLEKNQQWQKYDQQREAYVRGLLARLKE 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 456667777899999999999999999888754
No 307
>PLN02678 seryl-tRNA synthetase
Probab=23.09 E-value=6.2e+02 Score=26.87 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCC
Q 018028 243 NEATANTLRSNLEQVLAHVGG 263 (362)
Q Consensus 243 nEA~A~~Lra~LeQ~l~q~~~ 263 (362)
.|.....+..+|.+++.....
T Consensus 90 le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 90 KEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 344445566677777777655
No 308
>smart00150 SPEC Spectrin repeats.
Probab=23.07 E-value=3.3e+02 Score=20.45 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018028 209 DEEIHRMRKLNWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 209 EeEIera~rrn~ELEErlrql~~E~QaWq~ 238 (362)
..+...+..+..+|+.+|..|......|+.
T Consensus 69 ~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~ 98 (101)
T smart00150 69 HPDAEEIEERLEELNERWEELKELAEERRQ 98 (101)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888899999999877777754
No 309
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=23.01 E-value=48 Score=30.65 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=17.3
Q ss_pred cccccccCCcCccccccccceEEE
Q 018028 336 TVCGSCLIGSCPVCNFVVDASLHV 359 (362)
Q Consensus 336 ~~C~~~l~~~CPvCR~~i~~~V~V 359 (362)
..+... .-.||+||..|.+.+.|
T Consensus 74 ~~~~~~-~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 74 ESQEQP-ELACPLCRGEVKGWTVV 96 (162)
T ss_pred cccccc-cccCccccCceeceEEc
Confidence 333334 77899999999998876
No 310
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.96 E-value=1.2e+03 Score=26.75 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=16.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELEEQRKRQSRMLI 194 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll 194 (362)
..+|--|+.=+.|||..=+|+=|+-.-+++
T Consensus 48 ~hld~aLkec~~qlr~~ree~eq~i~~~~~ 77 (769)
T PF05911_consen 48 SHLDGALKECMRQLRQVREEQEQKIHEAVA 77 (769)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445666666666666666666554444433
No 311
>PRK14158 heat shock protein GrpE; Provisional
Probab=22.94 E-value=2.8e+02 Score=26.20 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018028 164 QSEIDRYIAQHTEKVILELEEQRKRQSR 191 (362)
Q Consensus 164 ~~EID~~i~~q~ErLR~~LeE~RqRh~r 191 (362)
..+++ -+..+.+.+...+++.+.+..|
T Consensus 39 ~~~~~-~le~~l~~le~e~~el~d~~lR 65 (194)
T PRK14158 39 ADRIK-ELEEALAAKEAEAAANWDKYLR 65 (194)
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 3445566666666666555443
No 312
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=22.75 E-value=48 Score=33.76 Aligned_cols=45 Identities=31% Similarity=0.665 Sum_probs=34.7
Q ss_pred ccccccccc----cccceEEeCCCCcccCccccccc---CCcCccccccccce
Q 018028 311 RMLCRRCGE----KESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDAS 356 (362)
Q Consensus 311 ~~~C~iC~~----~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~ 356 (362)
...|.+|.+ .....+=.||++. +|-.|-..+ ...||.||.+....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccC
Confidence 358999998 3455666788998 899998776 68999999776543
No 313
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=22.64 E-value=5.5e+02 Score=22.91 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHH
Q 018028 173 QHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHR 214 (362)
Q Consensus 173 ~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIer 214 (362)
.++-.||+...|.---+...++..+...+..|-.+.+++.+.
T Consensus 9 ~niR~lra~~re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~ 50 (135)
T PRK10947 9 NNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAE 50 (135)
T ss_pred HhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777766666666666665555444444333333
No 314
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=22.46 E-value=4.4e+02 Score=21.69 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~ 231 (362)
.+++.+..+..++.+++..+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF11740_consen 95 QERAAAEAELAEAEAQAEELEA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433
No 315
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.43 E-value=41 Score=34.51 Aligned_cols=31 Identities=29% Similarity=0.699 Sum_probs=27.3
Q ss_pred CccccccccccccceEEeCCC--CcccCcccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCR--HLCLCTVCGSC 341 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCr--HlclC~~C~~~ 341 (362)
....|..|-+....|+++||. |. .|.+|...
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr~ 252 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRHV-TCLDCFRL 252 (446)
T ss_pred ccceeEEecCCccceEEEecCCcee-ehHHhhhh
Confidence 456899999999999999999 87 89999874
No 316
>PRK14162 heat shock protein GrpE; Provisional
Probab=22.41 E-value=2.8e+02 Score=26.17 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018028 164 QSEIDRYIAQHTEKVILELEEQRKRQSR 191 (362)
Q Consensus 164 ~~EID~~i~~q~ErLR~~LeE~RqRh~r 191 (362)
..|++.+ ..+.+.+...+++.+.+..|
T Consensus 38 ~~e~~~l-~~~l~~l~~e~~elkd~~lR 64 (194)
T PRK14162 38 QNPVEDL-EKEIADLKAKNKDLEDKYLR 64 (194)
T ss_pred chhHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4666664 55677777777777655544
No 317
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=22.23 E-value=32 Score=25.65 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=6.1
Q ss_pred Ccccccccccc
Q 018028 310 GRMLCRRCGEK 320 (362)
Q Consensus 310 ~~~~C~iC~~~ 320 (362)
....|.+|...
T Consensus 33 ~~w~CP~C~a~ 43 (50)
T cd00730 33 DDWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCCc
Confidence 34566666543
No 318
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=22.18 E-value=7e+02 Score=23.86 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=9.2
Q ss_pred HHHHHhHHHHHHHHHHH
Q 018028 169 RYIAQHTEKVILELEEQ 185 (362)
Q Consensus 169 ~~i~~q~ErLR~~LeE~ 185 (362)
++=+.+.|+|...++.-
T Consensus 24 rLR~~E~ek~~~m~~~g 40 (195)
T PF10226_consen 24 RLRRAEAEKMSLMVEHG 40 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666655543
No 319
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=22.17 E-value=13 Score=37.69 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=33.5
Q ss_pred CccccccccccccceEE-eCCCCcccCccccccc---CCcCccccccccceE
Q 018028 310 GRMLCRRCGEKESSVLL-LPCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 357 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlL-lPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V 357 (362)
.-..|.+|.+=-.+... .-|-|. .|+.|--.. ...||.|...|.++.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 34579999875444333 348787 788886554 789999999988764
No 320
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=22.10 E-value=4.8e+02 Score=21.96 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=10.9
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELE 183 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~Le 183 (362)
.|+|..|.-...+.+....
T Consensus 11 ~ev~~~i~k~~~~~~~~~~ 29 (125)
T PF14265_consen 11 EEVDKIIKKRLARWEKKQK 29 (125)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3477777766555554443
No 321
>PLN02436 cellulose synthase A
Probab=22.07 E-value=53 Score=38.37 Aligned_cols=44 Identities=20% Similarity=0.587 Sum_probs=31.7
Q ss_pred cccccccccc----ccceEEeCCCC--cccCccccccc----CCcCcccccccc
Q 018028 311 RMLCRRCGEK----ESSVLLLPCRH--LCLCTVCGSCL----IGSCPVCNFVVD 354 (362)
Q Consensus 311 ~~~C~iC~~~----~a~vlLlPCrH--lclC~~C~~~l----~~~CPvCR~~i~ 354 (362)
.-.|.||++. .-.=+|+.|.. ..+|..|...- ...||.|++...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3489999985 23337788853 34899997442 689999998765
No 322
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=22.07 E-value=4.3e+02 Score=30.25 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred ccccCCCccccc-----CC-CCCccccccccccccchhhhhhhcccCCcccchHHHHHHHHhhhHHHHHHHHHhHHHHHH
Q 018028 107 SMDKADSGLTYN-----IP-APRKRQRDSINDLDAFSLVSQKQKLSGFSSLLDQDIIFRLQQQQSEIDRYIAQHTEKVIL 180 (362)
Q Consensus 107 ~~~~~~s~lt~~-----~~-~~rkR~r~~~~~~~~~~~~~~~~~~s~~~s~l~~~l~~~l~qQ~~EID~~i~~q~ErLR~ 180 (362)
+...+|||-.|. .| .-||-.||+ -++-|---+.-.+.+.+.++|| |..+|+..-+|..+
T Consensus 522 s~~~~dsg~k~KKqi~tspip~rKn~rdE------------ErrEsRIqsysPqafkFfMEQH---VEnvlksyqqr~~R 586 (1034)
T KOG0608|consen 522 SSTGTDSGTKCKKQIHTSPIPVRKNTRDE------------ERRESRIQSYSPQAFKFFMEQH---VENVLKSYQQREKR 586 (1034)
T ss_pred ccccccccccchhhcccCccceecccchh------------hhhhhccccCCHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHH
Q 018028 181 ELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWV 221 (362)
Q Consensus 181 ~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~E 221 (362)
..+=-...+-.-|-...+....+-|-+||.---|++|..+.
T Consensus 587 k~QLEkEM~kagLpd~~q~qMrkmL~QKESnYiRLkRaKMd 627 (1034)
T KOG0608|consen 587 KKQLEKEMVKAGLPDIMQNQMRKMLQQKESNYIRLKRAKMD 627 (1034)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhHHHHHHhhcc
No 323
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=21.96 E-value=5.1e+02 Score=24.81 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=33.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018028 166 EIDRYIAQHTEKVILELEEQRKRQSRMLISAIQE---------GVANKLKEKDEEIHRMRKLNWVLQERVK 227 (362)
Q Consensus 166 EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~---------~~~~rLReKEeEIera~rrn~ELEErlr 227 (362)
.++. ++.+.||||..|..-|++.-.....--.+ .|.+=-|+...---.|-+||..||..|+
T Consensus 132 ~~~~-l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 132 ELGS-LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred cchh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444 44678888888888777766554433222 1222222222333446667777776665
No 324
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.87 E-value=62 Score=25.22 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=14.6
Q ss_pred CCcCccccccccceEEE
Q 018028 343 IGSCPVCNFVVDASLHV 359 (362)
Q Consensus 343 ~~~CPvCR~~i~~~V~V 359 (362)
...||+|.++....++.
T Consensus 39 ~p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGTRM 55 (59)
T ss_pred CccCCCcCCccccceee
Confidence 58999999999887765
No 325
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.86 E-value=4.5e+02 Score=21.55 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=22.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 202 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 202 ~~rLReKEeEIera~rrn~ELEErlrql~~E~ 233 (362)
..|..+-.+|-+++...|.-|++-+..|....
T Consensus 36 ~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 36 SDRVEEVKEENEKLESENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566788888888888888887775443
No 326
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.86 E-value=9.4e+02 Score=28.48 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 018028 221 VLQERVKSLFVENQIWRDLA 240 (362)
Q Consensus 221 ELEErlrql~~E~QaWq~~A 240 (362)
.|+..+++|+.|...|+.++
T Consensus 1030 aLq~di~~lEsek~elKqrl 1049 (1243)
T KOG0971|consen 1030 ALQADIDQLESEKAELKQRL 1049 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHh
Confidence 45556677777777777775
No 327
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=21.85 E-value=6.4e+02 Score=23.30 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 018028 177 KVILELEEQRKRQSRMLISAIQEGVANKLKE-KDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQT 242 (362)
Q Consensus 177 rLR~~LeE~RqRh~r~Ll~avE~~~~~rLRe-KEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~ 242 (362)
.=...+....+.+++.+...=+....+-+.+ ++..++++.++-.+.++++++...+...++..+++
T Consensus 72 ~E~~~l~a~N~~~N~~~~~~Re~Rl~~e~e~~~~~~l~~~~~~~~~~~~~~~~~e~~V~~~~e~sk~ 138 (170)
T PF14943_consen 72 EEHRRLMAWNEEWNAEIAELREERLAKEREEREEEILERLERKEEEEEERKERKEEEVRQLKEESKN 138 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444455544444433333322222 22345666666677777777777777777766544
No 328
>PHA01750 hypothetical protein
Probab=21.83 E-value=3.6e+02 Score=21.78 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELEEQRKRQ 189 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~RqRh 189 (362)
+-|..+++.+.+.||.++++-..|+
T Consensus 34 dAvkeIV~~ELdNL~~ei~~~kikq 58 (75)
T PHA01750 34 DAVKEIVNSELDNLKTEIEELKIKQ 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555555555554333
No 329
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.79 E-value=1.7e+02 Score=28.39 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=28.7
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018028 155 DIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSR 191 (362)
Q Consensus 155 ~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r 191 (362)
++..+|++.+.||++ ||-|+|++...|++..+||-.
T Consensus 58 ~l~~ql~~lq~ev~~-LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 58 QLQQQLSDNQSDIDS-LRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 577888888899988 488888888888887766644
No 330
>PRK14127 cell division protein GpsB; Provisional
Probab=21.71 E-value=2e+02 Score=24.82 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=7.7
Q ss_pred hHHHHHHHHHh
Q 018028 164 QSEIDRYIAQH 174 (362)
Q Consensus 164 ~~EID~~i~~q 174 (362)
..|+|.||..=
T Consensus 25 ~~EVD~FLd~V 35 (109)
T PRK14127 25 QDEVDKFLDDV 35 (109)
T ss_pred HHHHHHHHHHH
Confidence 36888888643
No 331
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.68 E-value=41 Score=33.74 Aligned_cols=45 Identities=29% Similarity=0.688 Sum_probs=30.5
Q ss_pred Ccccccccccccc----------ceEEeCCCCc----ccCcccccccCCcCcccccccc
Q 018028 310 GRMLCRRCGEKES----------SVLLLPCRHL----CLCTVCGSCLIGSCPVCNFVVD 354 (362)
Q Consensus 310 ~~~~C~iC~~~~a----------~vlLlPCrHl----clC~~C~~~l~~~CPvCR~~i~ 354 (362)
++..|.+|..+-- +..=|.|+|. |+=..|--.=..+||.|...++
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4558999987532 3345899997 4445553221789999987765
No 332
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.64 E-value=1.3e+03 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 166 EIDRYIAQHTEKVILELEEQRKRQSRMLISAIQ 198 (362)
Q Consensus 166 EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE 198 (362)
|+.+.=|.+-||=-++.+|+-+....+|=.-+|
T Consensus 346 e~eqkEreE~ekkererqEqErk~qlElekqLe 378 (1118)
T KOG1029|consen 346 EVEQKEREEEEKKERERQEQERKAQLELEKQLE 378 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333333333333
No 333
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.59 E-value=1.4e+03 Score=27.21 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=32.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATA 247 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A 247 (362)
..+-|-+.+++.+.+.+..+|+.+.+|..|-+.-+..++.-+...
T Consensus 394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 394 SELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334555677778888888888888888888888888776655433
No 334
>PRK14127 cell division protein GpsB; Provisional
Probab=21.54 E-value=2.9e+02 Score=23.87 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=12.9
Q ss_pred cchHHHHHHHHhhhHHHHHHHH
Q 018028 151 LLDQDIIFRLQQQQSEIDRYIA 172 (362)
Q Consensus 151 ~l~~~l~~~l~qQ~~EID~~i~ 172 (362)
.=.+++...|++=-.+++.|++
T Consensus 23 Yd~~EVD~FLd~V~~dye~l~~ 44 (109)
T PRK14127 23 YDQDEVDKFLDDVIKDYEAFQK 44 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666543
No 335
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=21.53 E-value=85 Score=24.92 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018028 213 HRMRKLNWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 213 era~rrn~ELEErlrql~~E~QaWq~ 238 (362)
.--.++|.||||.|+|. +|.|.-+.
T Consensus 29 ~h~~~knseleeWl~~e-~E~~~q~~ 53 (65)
T PF08599_consen 29 AHHAGKNSELEEWLRQE-MEEQRQQA 53 (65)
T ss_pred hccccccccHHHHHHHH-HHHHHHHH
Confidence 34467899999999875 44444433
No 336
>PRK14153 heat shock protein GrpE; Provisional
Probab=21.33 E-value=3.4e+02 Score=25.68 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=18.6
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018028 155 DIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSR 191 (362)
Q Consensus 155 ~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r 191 (362)
+-+-+|.. ..| +.=+..+.+.+...+++.+.+..|
T Consensus 24 ~~~~~~~~-~~~-~~~~~~ei~~l~~e~~elkd~~lR 58 (194)
T PRK14153 24 EEAEELKE-EPE-DSTADSETEKCREEIESLKEQLFR 58 (194)
T ss_pred HHHHHHhh-hhh-cccchHHHHHHHHHHHHHHHHHHH
Confidence 34444433 233 333455666777777776655544
No 337
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.12 E-value=33 Score=25.23 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=4.1
Q ss_pred cCcccccccc
Q 018028 345 SCPVCNFVVD 354 (362)
Q Consensus 345 ~CPvCR~~i~ 354 (362)
.||+|..+++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6777776654
No 338
>PRK14147 heat shock protein GrpE; Provisional
Probab=21.00 E-value=2.8e+02 Score=25.52 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018028 163 QQSEIDRYIAQHTEKVILELEEQRKRQSR 191 (362)
Q Consensus 163 Q~~EID~~i~~q~ErLR~~LeE~RqRh~r 191 (362)
...+.+. +..+.+.++..+++...+..|
T Consensus 16 ~~~~~~~-l~~~l~~l~~e~~elkd~~lR 43 (172)
T PRK14147 16 NPPETDP-LKAEVESLRSEIALVKADALR 43 (172)
T ss_pred CCccchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 556778888888877665544
No 339
>PRK14154 heat shock protein GrpE; Provisional
Probab=20.89 E-value=2.7e+02 Score=26.62 Aligned_cols=25 Identities=8% Similarity=0.228 Sum_probs=14.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018028 166 EIDRYIAQHTEKVILELEEQRKRQSR 191 (362)
Q Consensus 166 EID~~i~~q~ErLR~~LeE~RqRh~r 191 (362)
+|+. +..+.+.++..+++...+..|
T Consensus 53 ~~~~-l~~el~~le~e~~elkd~~lR 77 (208)
T PRK14154 53 SREK-LEGQLTRMERKVDEYKTQYLR 77 (208)
T ss_pred chhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 3455 445566677666666554443
No 340
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.86 E-value=3e+02 Score=25.51 Aligned_cols=15 Identities=7% Similarity=0.224 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHH
Q 018028 174 HTEKVILELEEQRKR 188 (362)
Q Consensus 174 q~ErLR~~LeE~RqR 188 (362)
+.+.++..++|.+.+
T Consensus 28 ~i~~le~e~~el~d~ 42 (176)
T PRK14151 28 RVQELEEQLAAAKDQ 42 (176)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554433
No 341
>KOG3068 consensus mRNA splicing factor [RNA processing and modification]
Probab=20.73 E-value=2.8e+02 Score=27.47 Aligned_cols=26 Identities=15% Similarity=0.482 Sum_probs=23.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql 229 (362)
|+|+.+.||.++-|.-..||-+++.|
T Consensus 70 rirDLNDEiNkLlrEk~~WE~rI~el 95 (268)
T KOG3068|consen 70 RIRDLNDEINKLLREKHHWEVRIREL 95 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999888
No 342
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=20.59 E-value=5.3e+02 Score=30.58 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=2.6
Q ss_pred HHHHHH
Q 018028 254 LEQVLA 259 (362)
Q Consensus 254 LeQ~l~ 259 (362)
.++.|.
T Consensus 240 Id~~L~ 245 (1123)
T PRK11448 240 IDQQLR 245 (1123)
T ss_pred HHHHHH
Confidence 344444
No 343
>PRK11519 tyrosine kinase; Provisional
Probab=20.50 E-value=1.2e+03 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 018028 166 EIDRYIAQHTEKVILELEEQ 185 (362)
Q Consensus 166 EID~~i~~q~ErLR~~LeE~ 185 (362)
..-.||..|.++++..|++.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~a 286 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVA 286 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34457888888888777665
No 344
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=20.47 E-value=2.5e+02 Score=30.88 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018028 177 KVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 236 (362)
Q Consensus 177 rLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaW 236 (362)
|+-+....+++..|.. .+| .||.+...|-|.+++.|+.|..||.-+..|++.-
T Consensus 290 ResA~~SRkKKKEy~~---~Le----~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~ 342 (655)
T KOG4343|consen 290 RESACQSRKKKKEYML---GLE----ARLQALLSENEQLKKENATLKRQLDELVSENQRL 342 (655)
T ss_pred HHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccc
Confidence 4455555556655543 233 6888899999999999999999999999998764
No 345
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=20.42 E-value=1.3e+03 Score=26.82 Aligned_cols=103 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHH---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HhhhH--------HHH
Q 018028 154 QDIIFRLQQQQSEIDR---------YIAQHTEKVILELEEQRKRQSRMLISAIQEGVANK----LKEKD--------EEI 212 (362)
Q Consensus 154 ~~l~~~l~qQ~~EID~---------~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~r----LReKE--------eEI 212 (362)
++|...++.-..||-. .++.|.+-.+.-.+|...+-.. +.+++|.+-+=. |++++ ++.
T Consensus 109 ~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~-~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~ 187 (966)
T KOG4286|consen 109 QELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPV-IMSTLETARIFLTEQPLEGLEKYQEPRELPPE 187 (966)
T ss_pred HHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHhcCCCcchhhcCCcccCCHH
Q ss_pred HHH-------HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 018028 213 HRM-------RKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 213 era-------~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~ 257 (362)
+++ .+..-++.+.|..|..++..|++.....=..-..|..+++..
T Consensus 188 ~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el 239 (966)
T KOG4286|consen 188 ERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDEL 239 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
No 346
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=20.34 E-value=1.6e+03 Score=27.22 Aligned_cols=8 Identities=13% Similarity=0.501 Sum_probs=2.9
Q ss_pred HhhhHHHH
Q 018028 161 QQQQSEID 168 (362)
Q Consensus 161 ~qQ~~EID 168 (362)
++.+.+|+
T Consensus 233 ~~~~~~le 240 (1353)
T TIGR02680 233 DEYRDELE 240 (1353)
T ss_pred HHHHHHHH
Confidence 33333333
No 347
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=20.33 E-value=2.3e+02 Score=30.36 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 018028 221 VLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 221 ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~ 257 (362)
-||.|+---.+|||.-|....+-|.-=.+|-++|.++
T Consensus 276 ~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 276 GLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4555555555666666665544444333444444443
No 348
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=20.31 E-value=4.1e+02 Score=23.68 Aligned_cols=47 Identities=30% Similarity=0.439 Sum_probs=37.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQ 256 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ 256 (362)
+-|.+||+-|+..+..|.-|.|.+-++ |.+..+..-++..|+.+|+.
T Consensus 78 Kvl~aKdETI~~lk~EN~fLKeAl~s~-------QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENRFLKEALYSM-------QELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHh
Confidence 457889999999999999999988877 45666667777778877653
No 349
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=20.28 E-value=4.2e+02 Score=23.85 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018028 211 EIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 211 EIera~rrn~ELEErlrql 229 (362)
+...+.++..+|+++|+.+
T Consensus 53 ~~~~le~rI~~L~~~L~~A 71 (156)
T TIGR01461 53 RLREIDRRVRFLTKRLENL 71 (156)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4445556666666666554
No 350
>PHA03155 hypothetical protein; Provisional
Probab=20.26 E-value=5.9e+02 Score=22.43 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=17.9
Q ss_pred CcccchHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH
Q 018028 148 FSSLLDQDIIFRLQQQQSEIDRYIAQHTEKVILELEE 184 (362)
Q Consensus 148 ~~s~l~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE 184 (362)
++..--++|.++|++ |+.++..|+..|..
T Consensus 5 ~~~~tvEeLaaeL~k--------L~~ENK~LKkkl~~ 33 (115)
T PHA03155 5 RACADVEELEKELQK--------LKIENKALKKKLLQ 33 (115)
T ss_pred CCCCCHHHHHHHHHH--------HHHHHHHHHHHHHc
Confidence 334445778888876 44556666666643
No 351
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.19 E-value=4.9e+02 Score=21.28 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHHH
Q 018028 165 SEIDRYIAQHTEK 177 (362)
Q Consensus 165 ~EID~~i~~q~Er 177 (362)
..+|.++.+..++
T Consensus 26 ~~vd~i~~ld~~~ 38 (108)
T PF02403_consen 26 EDVDEIIELDQER 38 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 6788888776443
No 352
>PRK14156 heat shock protein GrpE; Provisional
Probab=20.19 E-value=2.8e+02 Score=25.78 Aligned_cols=22 Identities=9% Similarity=-0.097 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH
Q 018028 215 MRKLNWVLQERVKSLFVENQIW 236 (362)
Q Consensus 215 a~rrn~ELEErlrql~~E~QaW 236 (362)
+..+..+|.+++.++.+|-+..
T Consensus 39 l~~e~~elkd~~lR~~AEfeN~ 60 (177)
T PRK14156 39 ANERADEFENKYLRAHAEMQNI 60 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 353
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=20.11 E-value=3.6e+02 Score=27.11 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=20.9
Q ss_pred ccchHHHHHHHHhhhHHH--HHHHHHhHH
Q 018028 150 SLLDQDIIFRLQQQQSEI--DRYIAQHTE 176 (362)
Q Consensus 150 s~l~~~l~~~l~qQ~~EI--D~~i~~q~E 176 (362)
..++|++...++.|-.|+ |+|-+.+..
T Consensus 154 ~~~aDgv~~FihHQivElARDCL~KS~~~ 182 (282)
T PF08926_consen 154 LPLADGVLRFIHHQIVELARDCLQKSREG 182 (282)
T ss_dssp B--S-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 458899999999999999 999888733
No 354
>PLN02320 seryl-tRNA synthetase
Probab=20.09 E-value=6.1e+02 Score=27.45 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhcCC
Q 018028 250 LRSNLEQVLAHVGG 263 (362)
Q Consensus 250 Lra~LeQ~l~q~~~ 263 (362)
+..+|++.+.....
T Consensus 156 ~~~~l~~~~l~iPN 169 (502)
T PLN02320 156 LTDELQLEAQSIPN 169 (502)
T ss_pred HHHHHHHHHHhCCC
Confidence 44455555555544
Done!