Query 018028
Match_columns 362
No_of_seqs 215 out of 1119
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.3 1.9E-12 6.4E-17 99.1 2.9 50 311-361 15-64 (68)
2 2vje_B MDM4 protein; proto-onc 99.2 1.6E-12 5.6E-17 97.7 1.0 52 311-362 7-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.2 3.4E-12 1.2E-16 96.2 1.8 52 311-362 8-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.2 1E-11 3.4E-16 97.6 2.8 51 311-362 18-68 (79)
5 4ic3_A E3 ubiquitin-protein li 99.1 1.2E-11 4.1E-16 95.4 2.7 52 310-362 23-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.1 1.5E-11 5.2E-16 94.7 0.7 52 310-362 24-75 (75)
7 3t6p_A Baculoviral IAP repeat- 98.9 1E-09 3.6E-14 107.8 4.3 52 310-362 294-345 (345)
8 1chc_A Equine herpes virus-1 r 98.1 9.3E-07 3.2E-11 65.5 2.7 48 312-360 6-57 (68)
9 4ayc_A E3 ubiquitin-protein li 98.1 1.7E-05 6E-10 67.1 10.2 44 313-357 55-101 (138)
10 2ecn_A Ring finger protein 141 98.0 7.1E-07 2.4E-11 66.6 0.4 49 310-360 14-65 (70)
11 2d8t_A Dactylidin, ring finger 98.0 2.4E-06 8.3E-11 64.2 2.5 44 311-355 15-61 (71)
12 2ecm_A Ring finger and CHY zin 98.0 3.2E-06 1.1E-10 60.0 2.7 44 311-355 5-55 (55)
13 2ysl_A Tripartite motif-contai 97.9 4.1E-06 1.4E-10 62.7 2.3 45 310-355 19-69 (73)
14 2xeu_A Ring finger protein 4; 97.9 2.8E-06 9.7E-11 61.6 1.2 49 312-361 4-64 (64)
15 2csy_A Zinc finger protein 183 97.9 7.3E-06 2.5E-10 63.0 3.1 46 311-357 15-63 (81)
16 2y1n_A E3 ubiquitin-protein li 97.8 6.3E-06 2.1E-10 82.4 3.2 51 310-361 331-385 (389)
17 2kiz_A E3 ubiquitin-protein li 97.8 9.6E-06 3.3E-10 60.3 2.3 45 312-357 15-65 (69)
18 2ect_A Ring finger protein 126 97.7 1.2E-05 4.3E-10 61.0 2.9 45 311-356 15-65 (78)
19 1bor_A Transcription factor PM 97.7 9.3E-06 3.2E-10 58.9 2.0 44 311-355 6-49 (56)
20 3ng2_A RNF4, snurf, ring finge 97.7 4.7E-06 1.6E-10 61.9 0.3 44 311-355 10-63 (71)
21 2ea6_A Ring finger protein 4; 97.7 5.4E-06 1.8E-10 61.0 0.5 44 311-355 15-68 (69)
22 1iym_A EL5; ring-H2 finger, ub 97.7 1.6E-05 5.6E-10 56.3 2.8 42 312-354 6-54 (55)
23 2ct2_A Tripartite motif protei 97.7 1.3E-05 4.3E-10 61.8 2.2 45 310-355 14-68 (88)
24 1x4j_A Ring finger protein 38; 97.6 1.7E-05 5.9E-10 60.0 2.3 44 311-355 23-72 (75)
25 2djb_A Polycomb group ring fin 97.6 2.2E-05 7.6E-10 59.1 2.8 46 310-356 14-63 (72)
26 2ecv_A Tripartite motif-contai 97.6 1.7E-05 5.8E-10 60.3 1.6 45 310-355 18-71 (85)
27 2l0b_A E3 ubiquitin-protein li 97.6 1.6E-05 5.5E-10 62.9 1.0 45 310-355 39-89 (91)
28 2egp_A Tripartite motif-contai 97.5 2.2E-05 7.5E-10 59.4 1.3 45 310-355 11-65 (79)
29 2ep4_A Ring finger protein 24; 97.5 3.6E-05 1.2E-09 57.8 2.5 46 311-357 15-66 (74)
30 2ecy_A TNF receptor-associated 97.5 1.9E-05 6.5E-10 58.4 0.9 45 310-355 14-62 (66)
31 2ecw_A Tripartite motif-contai 97.5 3.1E-05 1.1E-09 58.8 2.0 45 310-355 18-71 (85)
32 3fl2_A E3 ubiquitin-protein li 97.5 2.9E-05 9.9E-10 64.3 1.5 43 312-355 53-99 (124)
33 1g25_A CDK-activating kinase a 97.5 3.7E-05 1.3E-09 56.6 2.0 43 312-355 4-55 (65)
34 1jm7_A BRCA1, breast cancer ty 97.4 2.8E-05 9.5E-10 62.6 0.9 44 311-355 21-70 (112)
35 2yur_A Retinoblastoma-binding 97.4 7.8E-05 2.7E-09 56.5 3.3 44 310-354 14-63 (74)
36 3l11_A E3 ubiquitin-protein li 97.4 4.2E-05 1.4E-09 62.4 1.7 44 311-355 15-62 (115)
37 3ztg_A E3 ubiquitin-protein li 97.4 6.8E-05 2.3E-09 58.6 2.2 43 310-353 12-60 (92)
38 2y43_A E3 ubiquitin-protein li 97.3 5.5E-05 1.9E-09 60.1 1.5 44 311-355 22-69 (99)
39 1z6u_A NP95-like ring finger p 97.3 6.1E-05 2.1E-09 65.3 1.5 44 312-356 79-126 (150)
40 3lrq_A E3 ubiquitin-protein li 97.3 6.2E-05 2.1E-09 60.5 1.3 45 310-355 21-70 (100)
41 2ckl_A Polycomb group ring fin 97.3 8E-05 2.7E-09 60.2 1.9 45 310-355 14-62 (108)
42 2ckl_B Ubiquitin ligase protei 97.2 8.6E-05 2.9E-09 64.3 1.8 44 310-354 53-101 (165)
43 1e4u_A Transcriptional repress 97.2 4E-05 1.4E-09 59.9 -0.4 46 311-357 11-64 (78)
44 1t1h_A Gspef-atpub14, armadill 97.2 0.00011 3.6E-09 55.8 1.7 45 310-355 7-55 (78)
45 1jm7_B BARD1, BRCA1-associated 97.2 0.00014 4.8E-09 59.7 2.2 43 311-354 22-66 (117)
46 3hct_A TNF receptor-associated 97.1 0.00015 5E-09 59.7 2.1 45 310-355 17-65 (118)
47 2ysj_A Tripartite motif-contai 97.1 9.6E-05 3.3E-09 53.9 0.7 39 310-349 19-63 (63)
48 2ecj_A Tripartite motif-contai 97.0 0.00016 5.3E-09 51.5 1.3 39 310-349 14-58 (58)
49 1rmd_A RAG1; V(D)J recombinati 97.0 0.00022 7.6E-09 58.2 1.5 44 311-355 23-70 (116)
50 4ap4_A E3 ubiquitin ligase RNF 96.9 0.00017 5.9E-09 58.8 0.8 45 310-355 6-60 (133)
51 1v87_A Deltex protein 2; ring- 96.9 0.00022 7.5E-09 57.8 0.8 41 313-354 27-93 (114)
52 2f42_A STIP1 homology and U-bo 96.8 0.0026 8.8E-08 57.3 7.3 137 163-355 11-153 (179)
53 4ap4_A E3 ubiquitin ligase RNF 96.8 0.00037 1.3E-08 56.8 1.6 51 310-361 71-133 (133)
54 2ecl_A Ring-box protein 2; RNF 96.6 0.00054 1.8E-08 53.1 1.4 42 313-355 28-76 (81)
55 2kr4_A Ubiquitin conjugation f 96.5 0.0013 4.5E-08 51.5 2.7 45 310-355 13-60 (85)
56 3knv_A TNF receptor-associated 96.4 0.00062 2.1E-08 58.4 0.2 44 309-353 29-76 (141)
57 3hcs_A TNF receptor-associated 96.3 0.0014 4.9E-08 56.8 2.1 45 310-355 17-65 (170)
58 2c2l_A CHIP, carboxy terminus 96.1 0.0026 8.9E-08 57.9 3.2 45 310-355 207-255 (281)
59 2kre_A Ubiquitin conjugation f 96.0 0.003 1E-07 51.2 2.5 46 309-355 27-75 (100)
60 1wgm_A Ubiquitin conjugation f 95.8 0.0043 1.5E-07 50.1 2.6 45 310-355 21-69 (98)
61 3dpl_R Ring-box protein 1; ubi 95.8 0.0031 1.1E-07 51.9 1.6 30 323-353 67-99 (106)
62 4a0k_B E3 ubiquitin-protein li 94.9 0.0044 1.5E-07 52.2 0.0 41 312-353 49-110 (117)
63 2d8s_A Cellular modulator of i 94.7 0.014 4.7E-07 45.7 2.4 43 312-355 16-70 (80)
64 3vk6_A E3 ubiquitin-protein li 93.9 0.015 5.1E-07 48.2 1.0 32 325-357 16-51 (101)
65 2v71_A Nuclear distribution pr 93.1 1.7 5.8E-05 39.5 13.2 54 206-259 45-102 (189)
66 1wim_A KIAA0161 protein; ring 92.9 0.018 6E-07 45.3 -0.1 41 311-352 5-61 (94)
67 2yu4_A E3 SUMO-protein ligase 92.5 0.037 1.3E-06 43.8 1.3 42 310-352 6-59 (94)
68 3oja_B Anopheles plasmodium-re 90.4 7.1 0.00024 39.2 15.8 67 192-258 505-571 (597)
69 3htk_C E3 SUMO-protein ligase 89.5 0.13 4.6E-06 49.0 2.1 47 307-354 177-231 (267)
70 2oqq_A Transcription factor HY 89.4 0.95 3.3E-05 31.8 5.8 34 207-240 7-40 (42)
71 3oja_B Anopheles plasmodium-re 88.6 7.4 0.00025 39.0 14.3 38 224-261 544-581 (597)
72 1vyx_A ORF K3, K3RING; zinc-bi 86.6 0.18 6.1E-06 37.3 0.7 43 312-354 7-58 (60)
73 2v66_B Nuclear distribution pr 86.2 14 0.00047 30.9 13.5 86 171-261 8-93 (111)
74 3mq9_A Bone marrow stromal ant 84.8 6.4 0.00022 38.6 11.1 25 165-189 396-420 (471)
75 3mq7_A Bone marrow stromal ant 84.5 18 0.0006 30.7 13.6 83 153-237 14-105 (121)
76 4etp_A Kinesin-like protein KA 83.5 2.7 9.4E-05 41.7 7.9 58 203-260 3-60 (403)
77 3iv1_A Tumor susceptibility ge 82.1 5.8 0.0002 31.3 7.7 46 192-237 3-59 (78)
78 3oja_A Leucine-rich immune mol 81.0 19 0.00066 35.3 12.9 56 205-260 423-478 (487)
79 1ci6_A Transcription factor AT 79.8 4.7 0.00016 30.1 6.2 35 206-240 26-60 (63)
80 2bay_A PRE-mRNA splicing facto 76.9 0.68 2.3E-05 34.1 0.7 43 312-355 4-50 (61)
81 3na7_A HP0958; flagellar bioge 76.0 48 0.0016 30.4 14.7 51 205-255 92-142 (256)
82 3s9g_A Protein hexim1; cyclin 74.9 21 0.00073 29.4 9.1 30 202-238 64-93 (104)
83 1a93_B MAX protein, coiled coi 72.6 4.4 0.00015 27.3 3.8 23 208-230 12-34 (34)
84 2v66_B Nuclear distribution pr 72.6 10 0.00035 31.6 7.0 44 216-259 2-49 (111)
85 2ko5_A Ring finger protein Z; 72.3 0.98 3.3E-05 37.1 0.6 50 308-359 25-77 (99)
86 1dip_A Delta-sleep-inducing pe 72.1 2.4 8.3E-05 33.3 2.8 31 210-240 15-45 (78)
87 2wvr_A Geminin; DNA replicatio 70.4 21 0.00071 32.9 9.0 62 175-251 95-156 (209)
88 2jee_A YIIU; FTSZ, septum, coi 70.0 22 0.00076 28.1 8.0 21 219-239 50-70 (81)
89 1t6f_A Geminin; coiled-coil, c 69.9 3.5 0.00012 28.1 2.8 20 205-224 16-35 (37)
90 1x4t_A Hypothetical protein LO 67.9 16 0.00054 29.7 6.8 27 204-230 53-79 (92)
91 3hnw_A Uncharacterized protein 66.5 40 0.0014 28.8 9.6 30 204-233 104-133 (138)
92 1wlq_A Geminin; coiled-coil; 2 66.1 33 0.0011 27.3 8.2 50 176-226 19-68 (83)
93 2akf_A Coronin-1A; coiled coil 65.1 12 0.0004 24.6 4.4 28 208-235 4-31 (32)
94 1uii_A Geminin; human, DNA rep 65.0 46 0.0016 26.5 8.9 52 175-227 26-77 (83)
95 1jnm_A Proto-oncogene C-JUN; B 64.7 23 0.0008 25.9 6.8 20 219-238 24-43 (62)
96 2q6q_A Spindle POLE BODY compo 63.7 33 0.0011 26.5 7.5 29 202-230 9-37 (74)
97 2zxx_A Geminin; coiled-coil, c 62.9 29 0.001 27.3 7.3 51 176-229 15-67 (79)
98 1kd8_A GABH AIV, GCN4 acid bas 62.3 7.5 0.00026 26.4 3.3 28 204-231 2-29 (36)
99 1ez3_A Syntaxin-1A; three heli 61.3 37 0.0013 27.2 8.2 86 172-260 18-110 (127)
100 3nmd_A CGMP dependent protein 61.2 18 0.0006 28.1 5.7 32 205-236 35-66 (72)
101 3a7p_A Autophagy protein 16; c 60.8 86 0.003 27.5 10.7 30 210-239 103-136 (152)
102 2l5g_B Putative uncharacterize 60.7 18 0.00061 25.4 5.1 31 203-233 9-39 (42)
103 3vem_A Helicase protein MOM1; 59.8 77 0.0026 26.6 10.3 30 148-177 29-58 (115)
104 3ghg_A Fibrinogen alpha chain; 59.0 28 0.00097 36.2 8.4 28 159-186 75-102 (562)
105 1kd8_B GABH BLL, GCN4 acid bas 58.8 11 0.00039 25.5 3.7 27 204-230 2-28 (36)
106 3i00_A HIP-I, huntingtin-inter 56.7 78 0.0027 26.5 9.5 21 165-186 15-35 (120)
107 3vkg_A Dynein heavy chain, cyt 56.7 1.1E+02 0.0037 38.3 14.1 13 159-171 1949-1961(3245)
108 3mq7_A Bone marrow stromal ant 56.2 53 0.0018 27.7 8.2 52 175-227 55-109 (121)
109 1deq_A Fibrinogen (alpha chain 56.2 1.4E+02 0.0049 29.7 12.6 69 159-228 78-159 (390)
110 3o0z_A RHO-associated protein 56.0 1.1E+02 0.0038 27.2 14.5 31 157-187 8-41 (168)
111 3i00_A HIP-I, huntingtin-inter 54.6 42 0.0014 28.1 7.5 39 219-257 42-80 (120)
112 1fmh_A General control protein 54.4 21 0.00073 23.2 4.3 27 207-233 5-31 (33)
113 3k1l_B Fancl; UBC, ring, RWD, 53.7 1.8 6E-05 43.2 -1.4 46 312-358 309-376 (381)
114 2b5u_A Colicin E3; high resolu 52.3 1.6E+02 0.0054 30.6 12.5 55 205-259 351-416 (551)
115 1hjb_A Ccaat/enhancer binding 51.3 90 0.0031 24.8 8.8 30 210-239 43-72 (87)
116 4egx_A Kinesin-like protein KI 51.2 37 0.0013 30.0 7.0 30 198-230 7-36 (184)
117 2i1j_A Moesin; FERM, coiled-co 50.8 25 0.00086 36.3 6.7 73 173-254 300-372 (575)
118 2wt7_A Proto-oncogene protein 50.1 73 0.0025 23.3 9.5 35 206-240 26-60 (63)
119 3e98_A GAF domain of unknown f 49.5 39 0.0013 31.3 7.1 31 212-249 74-104 (252)
120 2fiy_A Protein FDHE homolog; F 49.2 8.7 0.0003 37.0 2.7 42 312-353 183-232 (309)
121 1t2k_D Cyclic-AMP-dependent tr 48.7 74 0.0025 23.0 9.1 34 206-239 25-58 (61)
122 1wle_A Seryl-tRNA synthetase; 47.3 1.4E+02 0.0046 30.5 11.3 93 154-263 51-155 (501)
123 3ghg_A Fibrinogen alpha chain; 47.1 2.7E+02 0.0092 29.0 13.7 96 153-260 48-146 (562)
124 3s9g_A Protein hexim1; cyclin 46.5 1E+02 0.0035 25.4 8.2 22 216-237 64-85 (104)
125 2v71_A Nuclear distribution pr 46.4 1.7E+02 0.0057 26.4 16.1 57 205-261 90-146 (189)
126 1i84_S Smooth muscle myosin he 45.4 99 0.0034 34.5 10.7 26 206-231 909-934 (1184)
127 1deq_A Fibrinogen (alpha chain 45.4 2.5E+02 0.0084 28.1 12.7 100 153-261 41-150 (390)
128 3nmd_A CGMP dependent protein 45.0 42 0.0015 26.0 5.5 22 206-227 29-50 (72)
129 1s94_A S-syntaxin; three helix 44.8 1.1E+02 0.0037 26.3 8.9 86 172-260 49-141 (180)
130 3lay_A Zinc resistance-associa 44.7 72 0.0025 28.3 7.8 25 162-186 71-98 (175)
131 3vkg_A Dynein heavy chain, cyt 44.4 2.6E+02 0.0088 35.2 14.7 14 32-45 1704-1717(3245)
132 1gd2_E Transcription factor PA 44.0 72 0.0025 24.3 6.6 7 185-191 11-17 (70)
133 3s4r_A Vimentin; alpha-helix, 42.4 1.3E+02 0.0043 23.9 12.4 77 152-237 14-90 (93)
134 1t3j_A Mitofusin 1; coiled coi 41.9 1.1E+02 0.0039 24.8 7.8 44 203-257 47-90 (96)
135 3m48_A General control protein 41.4 34 0.0012 22.8 3.8 27 204-230 1-27 (33)
136 3pwf_A Rubrerythrin; non heme 41.3 11 0.00039 33.0 2.0 17 343-359 153-169 (170)
137 1gu4_A CAAT/enhancer binding p 41.2 1.2E+02 0.004 23.6 7.6 29 210-238 43-71 (78)
138 3m91_A Proteasome-associated A 39.5 49 0.0017 23.9 4.8 31 202-232 8-38 (51)
139 1uo4_A General control protein 39.5 35 0.0012 22.9 3.7 27 204-230 2-28 (34)
140 2hy6_A General control protein 39.0 36 0.0012 22.8 3.7 27 204-230 2-28 (34)
141 3c3g_A Alpha/beta peptide with 37.7 44 0.0015 22.3 3.8 25 205-229 2-26 (33)
142 2wq1_A General control protein 37.6 41 0.0014 22.4 3.7 26 204-229 1-26 (33)
143 3ghg_C Fibrinogen gamma chain; 37.4 3.3E+02 0.011 27.3 12.6 105 153-259 22-133 (411)
144 2dgc_A Protein (GCN4); basic d 36.2 1.2E+02 0.0041 22.3 6.7 19 218-236 31-49 (63)
145 3tnu_B Keratin, type II cytosk 36.1 1.8E+02 0.0062 23.9 9.8 22 211-232 76-97 (129)
146 2oxj_A Hybrid alpha/beta pepti 36.0 48 0.0016 22.3 3.8 26 204-229 2-27 (34)
147 3u06_A Protein claret segregat 35.8 1E+02 0.0035 30.6 8.1 52 207-258 7-58 (412)
148 3u1c_A Tropomyosin alpha-1 cha 35.3 1.7E+02 0.0058 23.3 13.0 54 203-256 37-97 (101)
149 1jnm_A Proto-oncogene C-JUN; B 35.1 50 0.0017 24.1 4.4 35 204-238 23-57 (62)
150 3oja_A Leucine-rich immune mol 34.9 3.2E+02 0.011 26.4 12.3 11 160-170 365-375 (487)
151 3vem_A Helicase protein MOM1; 34.0 2.1E+02 0.0071 24.0 8.5 12 207-218 65-76 (115)
152 1jad_A PLC-beta, phospholipase 33.7 3E+02 0.01 25.8 13.6 92 157-255 31-144 (251)
153 1lko_A Rubrerythrin all-iron(I 33.5 16 0.00053 32.4 1.6 16 343-358 171-186 (191)
154 2dq0_A Seryl-tRNA synthetase; 33.3 2.3E+02 0.0079 28.3 10.3 79 167-263 30-108 (455)
155 1m1j_C Fibrinogen gamma chain; 33.0 3.3E+02 0.011 27.1 11.3 23 237-259 111-133 (409)
156 2p4v_A Transcription elongatio 32.8 1.1E+02 0.0037 26.3 6.9 20 210-229 46-65 (158)
157 3c3f_A Alpha/beta peptide with 32.6 54 0.0019 22.0 3.7 26 204-229 2-27 (34)
158 1e8j_A Rubredoxin; iron-sulfur 32.4 21 0.00071 25.7 1.8 15 345-359 38-52 (52)
159 3cvf_A Homer-3, homer protein 32.0 1.4E+02 0.0049 23.3 6.7 23 211-233 14-36 (79)
160 2jun_A Midline-1; B-BOX, TRIM, 31.9 10 0.00034 29.5 0.1 29 312-341 4-35 (101)
161 3qne_A Seryl-tRNA synthetase, 31.8 2.5E+02 0.0085 28.6 10.3 77 167-263 32-110 (485)
162 2ct0_A Non-SMC element 1 homol 31.6 23 0.00077 27.1 2.0 44 312-356 16-65 (74)
163 2bni_A General control protein 31.4 57 0.002 21.9 3.7 26 204-229 2-27 (34)
164 2f23_A Anti-cleavage anti-GREA 31.2 95 0.0032 26.4 6.2 20 210-229 46-65 (156)
165 3tnu_A Keratin, type I cytoske 30.9 2.2E+02 0.0077 23.4 9.0 23 210-232 77-99 (131)
166 3tnu_B Keratin, type II cytosk 30.7 2.2E+02 0.0076 23.3 10.3 22 208-229 48-69 (129)
167 2zxx_A Geminin; coiled-coil, c 30.0 2E+02 0.0068 22.5 8.6 41 210-250 34-74 (79)
168 3u59_A Tropomyosin beta chain; 29.7 2.1E+02 0.0071 22.6 13.0 54 204-257 38-98 (101)
169 2r2v_A GCN4 leucine zipper; co 29.6 65 0.0022 21.6 3.7 26 204-229 2-27 (34)
170 1a92_A Delta antigen; leucine 29.5 50 0.0017 23.8 3.4 23 202-224 13-35 (50)
171 1yuz_A Nigerythrin; rubrythrin 29.4 20 0.0007 32.1 1.7 16 343-358 186-201 (202)
172 1gk4_A Vimentin; intermediate 29.3 1.9E+02 0.0066 22.1 7.9 25 209-233 25-49 (84)
173 1hjb_A Ccaat/enhancer binding 29.0 1.4E+02 0.0047 23.7 6.3 39 215-253 34-72 (87)
174 3cve_A Homer protein homolog 1 28.7 2E+02 0.0068 22.1 7.4 22 211-232 8-29 (72)
175 1yzm_A FYVE-finger-containing 28.5 1E+02 0.0034 22.4 4.9 41 171-215 7-47 (51)
176 1dx8_A Rubredoxin; electron tr 28.3 21 0.0007 27.3 1.3 15 345-359 42-56 (70)
177 2dq3_A Seryl-tRNA synthetase; 28.0 1.8E+02 0.0063 28.6 8.5 16 248-263 92-107 (425)
178 1d7m_A Cortexillin I; coiled-c 27.9 2.4E+02 0.0083 22.8 9.5 12 160-171 23-34 (101)
179 2yy0_A C-MYC-binding protein; 27.6 1.1E+02 0.0037 22.1 5.0 27 210-236 19-45 (53)
180 1z0k_B FYVE-finger-containing 27.4 90 0.0031 24.0 4.7 41 171-215 25-65 (69)
181 1z0j_B FYVE-finger-containing 27.3 76 0.0026 23.7 4.2 43 169-215 12-54 (59)
182 1ci6_A Transcription factor AT 27.0 1.9E+02 0.0064 21.2 7.4 35 218-252 24-58 (63)
183 1grj_A GREA protein; transcrip 26.8 1.4E+02 0.0049 25.4 6.6 20 210-229 46-65 (158)
184 4ani_A Protein GRPE; chaperone 26.6 1.3E+02 0.0045 27.5 6.6 26 165-191 59-84 (213)
185 3ol1_A Vimentin; structural ge 25.8 2.7E+02 0.0093 22.7 13.6 79 156-238 18-104 (119)
186 2i1j_A Moesin; FERM, coiled-co 25.5 59 0.002 33.6 4.5 47 199-245 338-391 (575)
187 3m9b_A Proteasome-associated A 25.2 53 0.0018 31.0 3.7 44 202-259 53-96 (251)
188 1sjj_A Actinin; 3-helix bundle 25.0 3.8E+02 0.013 28.0 10.7 33 210-242 443-475 (863)
189 3a2a_A Voltage-gated hydrogen 24.5 2E+02 0.0068 21.3 5.9 14 206-219 35-48 (58)
190 3a7p_A Autophagy protein 16; c 24.0 3.6E+02 0.012 23.5 8.6 23 211-233 69-91 (152)
191 1m1j_A Fibrinogen alpha subuni 23.9 4.3E+02 0.015 27.1 10.2 65 156-229 94-158 (491)
192 2wt7_A Proto-oncogene protein 23.6 2.1E+02 0.0073 20.7 7.0 28 218-245 24-51 (63)
193 2spc_A Spectrin; cytoskeleton; 23.5 2.4E+02 0.0083 21.3 10.5 33 207-239 72-104 (107)
194 1ses_A Seryl-tRNA synthetase; 23.3 4.2E+02 0.014 26.0 10.1 40 210-263 64-103 (421)
195 3na7_A HP0958; flagellar bioge 23.3 4.2E+02 0.014 23.9 14.7 24 205-228 62-85 (256)
196 4rxn_A Rubredoxin; electron tr 23.2 30 0.001 25.2 1.3 10 311-320 36-45 (54)
197 1yk4_A Rubredoxin, RD; electro 23.2 35 0.0012 24.5 1.7 13 345-357 37-49 (52)
198 1lwu_B Fibrinogen beta chain; 23.1 98 0.0033 29.9 5.3 31 199-229 24-54 (323)
199 1weo_A Cellulose synthase, cat 22.4 40 0.0014 27.3 2.0 44 311-354 16-69 (93)
200 4b6x_A AVRRPS4, avirulence pro 22.0 3E+02 0.01 21.8 7.3 70 151-228 18-87 (90)
201 4emc_A Monopolin complex subun 21.3 3.9E+02 0.013 24.1 8.4 67 184-254 12-81 (190)
202 2v3b_B Rubredoxin 2, rubredoxi 21.1 35 0.0012 24.8 1.3 14 345-358 38-51 (55)
203 1gu4_A CAAT/enhancer binding p 21.0 1.5E+02 0.005 23.0 4.9 28 215-242 34-61 (78)
204 2ve7_A Kinetochore protein HEC 20.6 1.3E+02 0.0043 28.7 5.5 38 199-236 174-211 (315)
205 3ghg_C Fibrinogen gamma chain; 20.2 6E+02 0.02 25.4 10.4 51 177-233 85-135 (411)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.9e-12 Score=99.12 Aligned_cols=50 Identities=34% Similarity=0.769 Sum_probs=47.5
Q ss_pred ccccccccccccceEEeCCCCcccCcccccccCCcCccccccccceEEEee
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNL 361 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~~CPvCR~~i~~~V~V~l 361 (362)
...|+||++++++++|+||+|+++|..|... ...||+||.+|...++||.
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-FQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-CSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhc-CCCCCCCCcchhceEEeec
Confidence 4589999999999999999999999999999 9999999999999999985
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.22 E-value=1.6e-12 Score=97.71 Aligned_cols=52 Identities=23% Similarity=0.520 Sum_probs=46.8
Q ss_pred ccccccccccccceEEe--CCCCcccCccccccc---CCcCccccccccceEEEeeC
Q 018028 311 RMLCRRCGEKESSVLLL--PCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVNLS 362 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLl--PCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~V~lS 362 (362)
...|.||++++++.+++ ||||+++|..|+..+ ...||+||.+|...++||+|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 34799999999988877 999999999999984 34999999999999999987
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.19 E-value=3.4e-12 Score=96.24 Aligned_cols=52 Identities=21% Similarity=0.452 Sum_probs=47.4
Q ss_pred ccccccccccccceEEe--CCCCcccCccccccc---CCcCccccccccceEEEeeC
Q 018028 311 RMLCRRCGEKESSVLLL--PCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVNLS 362 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLl--PCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~V~lS 362 (362)
...|.||+++.++++++ ||||+++|..|...+ ...||+||.+|...+++|+|
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 34799999999999998 999999999999885 35699999999999999986
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.15 E-value=1e-11 Score=97.55 Aligned_cols=51 Identities=39% Similarity=0.795 Sum_probs=48.2
Q ss_pred ccccccccccccceEEeCCCCcccCcccccccCCcCccccccccceEEEeeC
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 362 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~~CPvCR~~i~~~V~V~lS 362 (362)
...|+||++...+++++||||.++|..|... ...||+||.+|...+++|++
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQ-LQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTT-CSBCTTTCCBCCEEEECBCT
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHh-cCcCCCCCchhhCeEEEEeC
Confidence 4589999999999999999999999999999 88999999999999999974
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.14 E-value=1.2e-11 Score=95.36 Aligned_cols=52 Identities=27% Similarity=0.809 Sum_probs=48.3
Q ss_pred CccccccccccccceEEeCCCCcccCcccccccCCcCccccccccceEEEeeC
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 362 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~~CPvCR~~i~~~V~V~lS 362 (362)
+...|.||++...+.+++||||.++|..|... ...||+||.++...++||+|
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-VDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTT-CSBCTTTCCBCSEEEECBC-
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhc-CccCCCcCcCccCcEEEeeC
Confidence 34589999999999999999999999999999 79999999999999999997
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.5e-11 Score=94.67 Aligned_cols=52 Identities=27% Similarity=0.808 Sum_probs=49.0
Q ss_pred CccccccccccccceEEeCCCCcccCcccccccCCcCccccccccceEEEeeC
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 362 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~~CPvCR~~i~~~V~V~lS 362 (362)
+...|.||++...+.+++||+|.++|..|... ...||+||.++...++||+|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-VDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-CSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-CCCCccCCceecCcEEEecC
Confidence 34589999999999999999999999999999 89999999999999999997
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.86 E-value=1e-09 Score=107.77 Aligned_cols=52 Identities=33% Similarity=0.861 Sum_probs=47.7
Q ss_pred CccccccccccccceEEeCCCCcccCcccccccCCcCccccccccceEEEeeC
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 362 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~~CPvCR~~i~~~V~V~lS 362 (362)
....|+||++...+.+++||||.|+|..|... ...||+||.+|...++||+|
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~-~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPS-LRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGG-CSBCTTTCCBCCEEEECC--
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhc-CCcCCCCCCCccCeEEeecC
Confidence 44689999999999999999999999999999 89999999999999999997
No 8
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.14 E-value=9.3e-07 Score=65.51 Aligned_cols=48 Identities=33% Similarity=0.726 Sum_probs=41.0
Q ss_pred cccccccccccc-eEEeCCCCcccCccccccc---CCcCccccccccceEEEe
Q 018028 312 MLCRRCGEKESS-VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVN 360 (362)
Q Consensus 312 ~~C~iC~~~~a~-vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~V~ 360 (362)
..|.||++...+ ++++||+|. .|..|.... ...||+||.++...++.+
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 479999999877 689999999 899998654 678999999998876654
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.10 E-value=1.7e-05 Score=67.14 Aligned_cols=44 Identities=25% Similarity=0.565 Sum_probs=38.3
Q ss_pred ccccccccccceEEeCCCCcccCccccccc---CCcCccccccccceE
Q 018028 313 LCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 357 (362)
Q Consensus 313 ~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V 357 (362)
.|.||++.-.+.+++||||. .|..|.... ...||+||.++....
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 69999999999999999995 899997654 688999999987653
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=7.1e-07 Score=66.65 Aligned_cols=49 Identities=24% Similarity=0.653 Sum_probs=41.0
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccceEEEe
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVN 360 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~V~ 360 (362)
+...|.||++...+ +++||+|. .|..|.... ...||+||.++.....+|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 34589999999888 88899999 899998764 578999999998765554
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=2.4e-06 Score=64.25 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=38.2
Q ss_pred ccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
...|.||++...+.+++||+|. +|..|...+ ...||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3479999999999999999999 899998764 5789999998864
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.97 E-value=3.2e-06 Score=59.95 Aligned_cols=44 Identities=30% Similarity=0.544 Sum_probs=36.3
Q ss_pred ccccccccccccc----eEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 311 RMLCRRCGEKESS----VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~----vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
...|.||++.-.+ ++++||+|. +|..|.... ...||+||.++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3479999987544 899999996 899998765 5799999998864
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=4.1e-06 Score=62.71 Aligned_cols=45 Identities=22% Similarity=0.550 Sum_probs=38.1
Q ss_pred CccccccccccccceEEeCCCCcccCcccccccC------CcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLI------GSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~------~~CPvCR~~i~~ 355 (362)
....|.||++...+.+++||+|. +|..|...+. ..||+||.++..
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34589999999999999999999 8999987643 379999998864
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.89 E-value=2.8e-06 Score=61.61 Aligned_cols=49 Identities=20% Similarity=0.563 Sum_probs=38.5
Q ss_pred cccccccccccc-------eEEeCCCCcccCccccccc---CCcCcccccccc--ceEEEee
Q 018028 312 MLCRRCGEKESS-------VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVD--ASLHVNL 361 (362)
Q Consensus 312 ~~C~iC~~~~a~-------vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~--~~V~V~l 361 (362)
..|.||++.-.+ ++++||+|. .|..|.... ...||+||..+. ....+||
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 479999986544 388899999 899998764 679999999987 4555543
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=7.3e-06 Score=62.98 Aligned_cols=46 Identities=20% Similarity=0.523 Sum_probs=38.9
Q ss_pred ccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccceE
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 357 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V 357 (362)
...|.||++.-.+.+++||+|. .|..|...+ ...||+||.++...+
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 3479999999999999999998 699998664 578999999987543
No 16
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.84 E-value=6.3e-06 Score=82.40 Aligned_cols=51 Identities=29% Similarity=0.701 Sum_probs=43.5
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccceEEEee
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDASLHVNL 361 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~~V~V~l 361 (362)
....|.||++...+.+++||||.. |..|.... ...||+||.++.....|.+
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 346899999999999999999995 99997642 5899999999998876654
No 17
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.76 E-value=9.6e-06 Score=60.26 Aligned_cols=45 Identities=33% Similarity=0.665 Sum_probs=36.4
Q ss_pred ccccccccc---ccceEEeCCCCcccCccccccc---CCcCccccccccceE
Q 018028 312 MLCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 357 (362)
Q Consensus 312 ~~C~iC~~~---~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V 357 (362)
..|.||++. ...++.+||+|. +|..|.... ...||+||..+...+
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 479999654 356888999999 899998754 678999999987654
No 18
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.75 E-value=1.2e-05 Score=61.01 Aligned_cols=45 Identities=36% Similarity=0.657 Sum_probs=35.8
Q ss_pred ccccccccc---cccceEEeCCCCcccCccccccc---CCcCccccccccce
Q 018028 311 RMLCRRCGE---KESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDAS 356 (362)
Q Consensus 311 ~~~C~iC~~---~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~ 356 (362)
...|.||++ .+..+..+||+|. +|..|.... ...||+||..+...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 347999965 4456778899997 899998754 67899999998753
No 19
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.74 E-value=9.3e-06 Score=58.93 Aligned_cols=44 Identities=30% Similarity=0.659 Sum_probs=37.3
Q ss_pred ccccccccccccceEEeCCCCcccCcccccccCCcCccccccccc
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l~~~CPvCR~~i~~ 355 (362)
...|.||++.-.+-+++||+|. .|..|.......||+||..+..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 3479999999888899999998 7999976536799999998763
No 20
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.73 E-value=4.7e-06 Score=61.88 Aligned_cols=44 Identities=23% Similarity=0.627 Sum_probs=35.8
Q ss_pred ccccccccccccce-------EEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 311 RMLCRRCGEKESSV-------LLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~v-------lLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
...|.||++.-.+- +++||+|. .|..|.... ...||+||..+..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 34799999875543 88999998 899998654 6799999999874
No 21
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=5.4e-06 Score=60.97 Aligned_cols=44 Identities=23% Similarity=0.627 Sum_probs=35.9
Q ss_pred ccccccccccccce-------EEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 311 RMLCRRCGEKESSV-------LLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~v-------lLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
...|.||++.-.+. +++||+|. +|..|...+ ...||+||..++.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34799999976553 88999996 899998765 5799999998864
No 22
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.71 E-value=1.6e-05 Score=56.34 Aligned_cols=42 Identities=26% Similarity=0.627 Sum_probs=34.6
Q ss_pred cccccccccccc---eEEeC-CCCcccCccccccc---CCcCcccccccc
Q 018028 312 MLCRRCGEKESS---VLLLP-CRHLCLCTVCGSCL---IGSCPVCNFVVD 354 (362)
Q Consensus 312 ~~C~iC~~~~a~---vlLlP-CrHlclC~~C~~~l---~~~CPvCR~~i~ 354 (362)
..|.||++.-.. +..+| |+|. .|..|.... ...||+||..+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 479999987655 77788 9998 899997654 678999998864
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=1.3e-05 Score=61.81 Aligned_cols=45 Identities=29% Similarity=0.587 Sum_probs=37.1
Q ss_pred Cccccccccccccc----eEEeCCCCcccCccccccc---C---CcCccccccccc
Q 018028 310 GRMLCRRCGEKESS----VLLLPCRHLCLCTVCGSCL---I---GSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~----vlLlPCrHlclC~~C~~~l---~---~~CPvCR~~i~~ 355 (362)
+...|.||++.-.+ .+++||+|. +|..|...+ . ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 44589999998777 888999997 799998765 2 689999998653
No 24
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=1.7e-05 Score=60.00 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=35.7
Q ss_pred cccccccccc---ccceEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 311 RMLCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~---~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
...|.||++. ...+..+||+|. .|..|.... ...||+||..+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3479999964 445688999998 899998764 6799999998865
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=2.2e-05 Score=59.07 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=37.6
Q ss_pred CccccccccccccceEEe-CCCCcccCccccccc---CCcCccccccccce
Q 018028 310 GRMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL---IGSCPVCNFVVDAS 356 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~l---~~~CPvCR~~i~~~ 356 (362)
....|.||++...+.+.+ ||+|. +|..|.... ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 345899999988877776 99998 699998654 67999999988653
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=1.7e-05 Score=60.28 Aligned_cols=45 Identities=31% Similarity=0.648 Sum_probs=37.5
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc---------CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---------IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---------~~~CPvCR~~i~~ 355 (362)
+...|.||++...+.+++||+|. +|..|...+ ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34589999999888888899998 899997653 4689999998874
No 27
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.56 E-value=1.6e-05 Score=62.90 Aligned_cols=45 Identities=31% Similarity=0.682 Sum_probs=36.2
Q ss_pred Cccccccccccccc---eEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESS---VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~---vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
....|.||++.-.. +..+||+|. +|..|.... ...||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34579999876544 888999997 899997654 6799999998865
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.53 E-value=2.2e-05 Score=59.39 Aligned_cols=45 Identities=33% Similarity=0.646 Sum_probs=37.0
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc----------CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----------IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----------~~~CPvCR~~i~~ 355 (362)
+...|.||++.-.+.+.+||+|. +|..|.... ...||+||..+..
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34589999998888888899997 899998753 3479999998863
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=3.6e-05 Score=57.85 Aligned_cols=46 Identities=28% Similarity=0.559 Sum_probs=36.7
Q ss_pred cccccccccc---ccceEEeCCCCcccCccccccc---CCcCccccccccceE
Q 018028 311 RMLCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 357 (362)
Q Consensus 311 ~~~C~iC~~~---~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V 357 (362)
...|.||++. +..+..+||+|. +|..|.... ...||+||.++....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCccccccc
Confidence 3479999886 355677899999 899998664 679999999987644
No 30
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=1.9e-05 Score=58.38 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=37.5
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
+...|.||++.-.+.+.+||+|. .|..|.... ...||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45689999998888888999999 799997754 4689999998864
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.51 E-value=3.1e-05 Score=58.80 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=37.4
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc---------CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---------IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---------~~~CPvCR~~i~~ 355 (362)
....|.||++.-.+-+++||+|. +|..|.... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34589999999888889999998 899997653 3589999998864
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.48 E-value=2.9e-05 Score=64.32 Aligned_cols=43 Identities=26% Similarity=0.582 Sum_probs=36.8
Q ss_pred cccccccccccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 312 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
..|.||++.-.+-+.+||||. .|..|.... ...||+||.++..
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 479999999889999999998 799997543 3499999999875
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.47 E-value=3.7e-05 Score=56.60 Aligned_cols=43 Identities=33% Similarity=0.760 Sum_probs=33.1
Q ss_pred cccccccc----ccc-ceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 312 MLCRRCGE----KES-SVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 312 ~~C~iC~~----~~a-~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
..|.||++ .+. .++++||||. .|..|...+ ...||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 232 2366899998 799997764 3679999998863
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.44 E-value=2.8e-05 Score=62.59 Aligned_cols=44 Identities=25% Similarity=0.587 Sum_probs=36.5
Q ss_pred ccccccccccccceEEeCCCCcccCccccccc--C----CcCccccccccc
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL--I----GSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l--~----~~CPvCR~~i~~ 355 (362)
...|.||++.-.+.+.+||+|. .|..|.... . ..||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3479999999888888999998 799997664 1 379999998764
No 35
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.43 E-value=7.8e-05 Score=56.53 Aligned_cols=44 Identities=23% Similarity=0.623 Sum_probs=36.8
Q ss_pred CccccccccccccceEEeC-CCCcccCccccccc-----CCcCcccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLP-CRHLCLCTVCGSCL-----IGSCPVCNFVVD 354 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlP-CrHlclC~~C~~~l-----~~~CPvCR~~i~ 354 (362)
....|.||++.-.+-+.+| |+|. .|..|.... ...||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4458999999999999999 9998 899997665 258999999743
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.40 E-value=4.2e-05 Score=62.39 Aligned_cols=44 Identities=32% Similarity=0.625 Sum_probs=37.1
Q ss_pred ccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
...|.||++.-.+-+.+||+|. .|..|.... ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3579999999888888999998 899997664 3489999998763
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.35 E-value=6.8e-05 Score=58.58 Aligned_cols=43 Identities=23% Similarity=0.660 Sum_probs=36.3
Q ss_pred CccccccccccccceEEeC-CCCcccCccccccc-----CCcCccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLP-CRHLCLCTVCGSCL-----IGSCPVCNFVV 353 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlP-CrHlclC~~C~~~l-----~~~CPvCR~~i 353 (362)
+...|.||++--.+-+.+| |||. .|..|.... ...||+||.++
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4468999999888888999 9999 799997653 25899999986
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.33 E-value=5.5e-05 Score=60.13 Aligned_cols=44 Identities=25% Similarity=0.623 Sum_probs=36.6
Q ss_pred ccccccccccccceEEe-CCCCcccCccccccc---CCcCccccccccc
Q 018028 311 RMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
...|.||++.-.+-+.+ ||||. .|..|-... ...||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 34799999988888777 99998 799997654 5689999998874
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.29 E-value=6.1e-05 Score=65.27 Aligned_cols=44 Identities=25% Similarity=0.550 Sum_probs=37.3
Q ss_pred cccccccccccceEEeCCCCcccCccccccc----CCcCccccccccce
Q 018028 312 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDAS 356 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~~ 356 (362)
..|.||++.-.+-+.+||+|. +|..|.... ...||+||.++...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 479999999999999999997 799997664 24899999998754
No 40
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.29 E-value=6.2e-05 Score=60.48 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=37.6
Q ss_pred CccccccccccccceEE-eCCCCcccCccccccc---C-CcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLL-LPCRHLCLCTVCGSCL---I-GSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlL-lPCrHlclC~~C~~~l---~-~~CPvCR~~i~~ 355 (362)
+...|.||++.-.+-+. +||+|. .|..|-... . ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 34579999999988888 999999 799997664 3 689999998753
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.28 E-value=8e-05 Score=60.21 Aligned_cols=45 Identities=24% Similarity=0.633 Sum_probs=37.9
Q ss_pred CccccccccccccceEEe-CCCCcccCccccccc---CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
....|.||++.-.+-+.+ ||||. .|..|.... ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 345899999998888887 99998 799997664 4789999999875
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.24 E-value=8.6e-05 Score=64.35 Aligned_cols=44 Identities=20% Similarity=0.529 Sum_probs=36.5
Q ss_pred CccccccccccccceEEe-CCCCcccCccccccc----CCcCcccccccc
Q 018028 310 GRMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL----IGSCPVCNFVVD 354 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~l----~~~CPvCR~~i~ 354 (362)
....|.||++.-.+.+.+ ||+|. +|..|.... ...||+||.++.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 345899999988887777 99998 799998665 457999999884
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.23 E-value=4e-05 Score=59.92 Aligned_cols=46 Identities=24% Similarity=0.580 Sum_probs=35.7
Q ss_pred ccccccccccc--cceEEeC--CCCcccCccccccc----CCcCccccccccceE
Q 018028 311 RMLCRRCGEKE--SSVLLLP--CRHLCLCTVCGSCL----IGSCPVCNFVVDASL 357 (362)
Q Consensus 311 ~~~C~iC~~~~--a~vlLlP--CrHlclC~~C~~~l----~~~CPvCR~~i~~~V 357 (362)
...|.||++.- .++.++| |||. +|..|...+ ...||+||.++....
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 34799999954 3456666 9998 899997664 358999999987643
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.19 E-value=0.00011 Score=55.77 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=37.5
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
+...|.||++--.+-+.+||||. .|..|-... ...||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 44589999998888888999999 799997554 4579999999864
No 45
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.15 E-value=0.00014 Score=59.75 Aligned_cols=43 Identities=30% Similarity=0.614 Sum_probs=36.9
Q ss_pred ccccccccccccceEEe-CCCCcccCccccccc-CCcCcccccccc
Q 018028 311 RMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL-IGSCPVCNFVVD 354 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~l-~~~CPvCR~~i~ 354 (362)
...|.||++.-.+-+.+ ||||. .|..|.... ...||+||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 45799999998888888 99998 799998874 358999999875
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.14 E-value=0.00015 Score=59.75 Aligned_cols=45 Identities=24% Similarity=0.441 Sum_probs=38.1
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
+...|.||++.-.+-+.+||+|. .|..|.... ...||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 44589999999888889999998 899998664 3499999999875
No 47
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=9.6e-05 Score=53.93 Aligned_cols=39 Identities=23% Similarity=0.679 Sum_probs=32.8
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc------CCcCccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL------IGSCPVC 349 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l------~~~CPvC 349 (362)
+...|.||++.-.+.+++||+|. .|..|.... ...||+|
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 44589999999889899999999 899997654 2479998
No 48
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.00016 Score=51.48 Aligned_cols=39 Identities=28% Similarity=0.624 Sum_probs=32.6
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc------CCcCccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL------IGSCPVC 349 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l------~~~CPvC 349 (362)
+...|.||++...+.+++||+|. .|..|.... ...||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 34589999999888888999999 899997553 4689998
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.95 E-value=0.00022 Score=58.16 Aligned_cols=44 Identities=23% Similarity=0.604 Sum_probs=37.4
Q ss_pred ccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 311 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 311 ~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
...|.||++...+.+.+||||. .|..|-... ...||+||.++..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4579999999999999999999 799997654 4589999999764
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.95 E-value=0.00017 Score=58.80 Aligned_cols=45 Identities=24% Similarity=0.662 Sum_probs=36.0
Q ss_pred Cccccccccccccce-------EEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSV-------LLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~v-------lLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
+...|.||++.-.+- +.+||||. .|..|-... ...||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 345899999875543 88899997 899998654 5799999998874
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.86 E-value=0.00022 Score=57.79 Aligned_cols=41 Identities=27% Similarity=0.482 Sum_probs=31.5
Q ss_pred ccccccccc------------------cceEEeCCCCcccCccccccc--------CCcCcccccccc
Q 018028 313 LCRRCGEKE------------------SSVLLLPCRHLCLCTVCGSCL--------IGSCPVCNFVVD 354 (362)
Q Consensus 313 ~C~iC~~~~------------------a~vlLlPCrHlclC~~C~~~l--------~~~CPvCR~~i~ 354 (362)
.|.||++.- ..+.++||+|. +|..|-... ...||+||..+.
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 799998763 24458999997 899996543 358999998875
No 52
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.80 E-value=0.0026 Score=57.32 Aligned_cols=137 Identities=12% Similarity=0.017 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHH
Q 018028 163 QQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLN--WVLQERVKSLFVENQIWRDLA 240 (362)
Q Consensus 163 Q~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn--~ELEErlrql~~E~QaWq~~A 240 (362)
...||...|+.=-.+-+...+++|.++...|.+.++..+. ++++.+++...++. ..+++..+.+ .
T Consensus 11 ~~~~I~~~l~~aKk~~w~~~e~~r~~~~~~l~~~~~~l~~---~~~~~~l~~~~~~~~~~~~~~~~~~~----------~ 77 (179)
T 2f42_A 11 FGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLIL---AEKERELDDRVKQSDDSQNGGDISKM----------K 77 (179)
T ss_dssp -----------CCCTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTC----------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccchhhhHHHHHH----------H
Confidence 3456666676666667788888999999999998886542 34444443332210 1111111111 1
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCccchhhhccCCCCCCCcccccCCccccccCCCcccccccccc
Q 018028 241 QTNEATANTLRSNLEQVLAHVGGEGDDCAGGGATLAAAAEDDAESSCGSSDFGRSTIAGEGAQDKAVGGGRMLCRRCGEK 320 (362)
Q Consensus 241 ~~nEA~A~~Lra~LeQ~l~q~~~l~~~~eG~g~s~~~~~adDAeScc~~~~~~r~~l~geea~~~~~~~~~~~C~iC~~~ 320 (362)
...+.... ++..+..+..+ ... . . .......|+||++-
T Consensus 78 ~~~~~~i~----~~~~l~~~~~~-------------------~~~---~---~-------------~ip~~f~CPI~~el 115 (179)
T 2f42_A 78 SKHDKYLM----DMDELFSQVDE-------------------KRK---K---R-------------EIPDYLCGKISFEL 115 (179)
T ss_dssp CHHHHHHH----HHHHHHHHHHH-------------------GGG---C---C-------------CCCGGGBCTTTCSB
T ss_pred HHHHHHHH----HHHHHHHHHhh-------------------hcc---c---c-------------CCcHhhcccCcccc
Confidence 11222111 23333332211 000 0 0 01234589999999
Q ss_pred ccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 321 ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 321 ~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
-.+=|.+||||. .|..|-... ...||+|+.+.+.
T Consensus 116 m~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 116 MREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 888899999997 799995543 2369999998764
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.79 E-value=0.00037 Score=56.84 Aligned_cols=51 Identities=22% Similarity=0.583 Sum_probs=39.3
Q ss_pred Cccccccccccccc-------eEEeCCCCcccCccccccc---CCcCcccccccc--ceEEEee
Q 018028 310 GRMLCRRCGEKESS-------VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVD--ASLHVNL 361 (362)
Q Consensus 310 ~~~~C~iC~~~~a~-------vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~--~~V~V~l 361 (362)
+...|.||.+.-.. ++.+||+|. .|..|.... ...||+||..+. ..+.+|+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 45689999986554 388899999 899997654 789999999876 3455553
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.00054 Score=53.08 Aligned_cols=42 Identities=26% Similarity=0.559 Sum_probs=28.7
Q ss_pred cccccccc----ccceEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 313 LCRRCGEK----ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 313 ~C~iC~~~----~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
.|.+|.+. ...+++.+|+|. .+..|-... ..+||+||.++..
T Consensus 28 ~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 28 ACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred cCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 36666542 223444469999 899997653 6799999998753
No 55
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.47 E-value=0.0013 Score=51.54 Aligned_cols=45 Identities=7% Similarity=-0.078 Sum_probs=38.2
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
....|.||++--.+=+.+||||. .|..|-... ..+||+|+.+.+.
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45689999999999999999998 899996554 6799999998764
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.36 E-value=0.00062 Score=58.40 Aligned_cols=44 Identities=20% Similarity=0.548 Sum_probs=36.5
Q ss_pred CCccccccccccccceEEeCCCCcccCccccccc----CCcCccccccc
Q 018028 309 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVV 353 (362)
Q Consensus 309 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i 353 (362)
.....|.||.+--.+-+.+||||. .|..|-... ...||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 355689999998888888999999 799997764 24899999975
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.28 E-value=0.0014 Score=56.75 Aligned_cols=45 Identities=24% Similarity=0.441 Sum_probs=38.3
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
+...|.||++--.+-+.+||||. .|..|.... ...||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45689999998888888999998 799998764 3499999998875
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.15 E-value=0.0026 Score=57.91 Aligned_cols=45 Identities=9% Similarity=-0.193 Sum_probs=37.1
Q ss_pred CccccccccccccceEEeCCCCcccCccccccc----CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~ 355 (362)
....|.||++--.+=|.+||||. .|..|-... ...||+|+.+++.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 44589999999999999999998 799996543 2349999998863
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=95.99 E-value=0.003 Score=51.22 Aligned_cols=46 Identities=7% Similarity=-0.092 Sum_probs=38.7
Q ss_pred CCccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccc
Q 018028 309 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 309 ~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
.....|.||++--.+=|.+||||. .|..|-... ..+||+|+.+++.
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 355689999999999999999998 899996543 5799999998764
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.79 E-value=0.0043 Score=50.11 Aligned_cols=45 Identities=9% Similarity=-0.063 Sum_probs=37.7
Q ss_pred CccccccccccccceEEeCCC-CcccCccccccc---CCcCccccccccc
Q 018028 310 GRMLCRRCGEKESSVLLLPCR-HLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlPCr-HlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
....|.||++--.+=|.+||+ |. .|..|-... ...||+|+.+++.
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 456899999999999999999 87 789996553 5689999998764
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=95.75 E-value=0.0031 Score=51.94 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=25.1
Q ss_pred ceEEeCCCCcccCccccccc---CCcCccccccc
Q 018028 323 SVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVV 353 (362)
Q Consensus 323 ~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i 353 (362)
.++++||+|. .+..|-... ...||+||...
T Consensus 67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence 3788999998 899997664 68899999985
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=94.93 E-value=0.0044 Score=52.16 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=0.0
Q ss_pred ccccccccccc------------------ceEEeCCCCcccCccccccc---CCcCccccccc
Q 018028 312 MLCRRCGEKES------------------SVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVV 353 (362)
Q Consensus 312 ~~C~iC~~~~a------------------~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i 353 (362)
-.|.||++.-. .++++||+|. .+..|-... ...||+||.+.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 36888876532 3556799999 899997664 57899999874
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.72 E-value=0.014 Score=45.68 Aligned_cols=43 Identities=26% Similarity=0.637 Sum_probs=32.1
Q ss_pred cccccccccc--cceEEeCCC-----CcccCccccccc-----CCcCccccccccc
Q 018028 312 MLCRRCGEKE--SSVLLLPCR-----HLCLCTVCGSCL-----IGSCPVCNFVVDA 355 (362)
Q Consensus 312 ~~C~iC~~~~--a~vlLlPCr-----HlclC~~C~~~l-----~~~CPvCR~~i~~ 355 (362)
..|.||++.. .+.+++||+ |. +...|-... ...||+||..+..
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4799999642 345679997 88 688887654 2589999998753
No 64
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=93.93 E-value=0.015 Score=48.18 Aligned_cols=32 Identities=28% Similarity=0.640 Sum_probs=25.6
Q ss_pred EEeCCCCcccCccccccc----CCcCccccccccceE
Q 018028 325 LLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDASL 357 (362)
Q Consensus 325 lLlPCrHlclC~~C~~~l----~~~CPvCR~~i~~~V 357 (362)
-++||.| .+|.+|+... ...||.|+.+|...=
T Consensus 16 RmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 16 RMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp EEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred eeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 3679999 5999999542 679999999987543
No 65
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.10 E-value=1.7 Score=39.49 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHH----HHHHHHHHHHHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEAT----ANTLRSNLEQVLA 259 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~----A~~Lra~LeQ~l~ 259 (362)
.|-|.||+++.+++.+|..++.++..|.+.|+.+......- ++.|+.++.++..
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~ 102 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRA 102 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999987666544 5666665555443
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.91 E-value=0.018 Score=45.31 Aligned_cols=41 Identities=24% Similarity=0.549 Sum_probs=29.3
Q ss_pred cccccccccccc--c-eEEeCCCCcccCccccccc-----------CCcCcc--cccc
Q 018028 311 RMLCRRCGEKES--S-VLLLPCRHLCLCTVCGSCL-----------IGSCPV--CNFV 352 (362)
Q Consensus 311 ~~~C~iC~~~~a--~-vlLlPCrHlclC~~C~~~l-----------~~~CPv--CR~~ 352 (362)
...|.||++.-. . +.+.||+|. .|..|-... .-.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 457999997532 2 333489998 899995432 248999 9987
No 67
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.55 E-value=0.037 Score=43.83 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=33.6
Q ss_pred CccccccccccccceEEeC-CCCcccCccccccc---------CCcCcc--cccc
Q 018028 310 GRMLCRRCGEKESSVLLLP-CRHLCLCTVCGSCL---------IGSCPV--CNFV 352 (362)
Q Consensus 310 ~~~~C~iC~~~~a~vlLlP-CrHlclC~~C~~~l---------~~~CPv--CR~~ 352 (362)
....|.||++--.+=|.+| |||. .|..|-... ...||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4468999999988999997 9998 799996543 138999 8844
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.44 E-value=7.1 Score=39.16 Aligned_cols=67 Identities=15% Similarity=0.031 Sum_probs=41.7
Q ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018028 192 MLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVL 258 (362)
Q Consensus 192 ~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l 258 (362)
..+......+..+...++.++++..+...+.++..+++..|...|...-++.+.....|+.++++..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~ 571 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3344444455556666666666666666667777777777777777776666665555555444443
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=89.50 E-value=0.13 Score=49.03 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=36.3
Q ss_pred cCCCccccccccccccceEE-eCCCCcccCccccccc-----CCcCcc--cccccc
Q 018028 307 VGGGRMLCRRCGEKESSVLL-LPCRHLCLCTVCGSCL-----IGSCPV--CNFVVD 354 (362)
Q Consensus 307 ~~~~~~~C~iC~~~~a~vlL-lPCrHlclC~~C~~~l-----~~~CPv--CR~~i~ 354 (362)
.......|.||++--.+=|. ..|||. .|+.|-... ...||+ |+..+.
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CCceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34566789999998777776 499996 899987654 247999 998764
No 70
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.38 E-value=0.95 Score=31.85 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018028 207 EKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLA 240 (362)
Q Consensus 207 eKEeEIera~rrn~ELEErlrql~~E~QaWq~~A 240 (362)
+.|.....+..+|+|||+|+.-|..|++.-+.+-
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3445555667889999999999999999887653
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.62 E-value=7.4 Score=39.03 Aligned_cols=38 Identities=13% Similarity=-0.003 Sum_probs=19.3
Q ss_pred HHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 224 ERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 224 Erlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
+...++....+.=+....+-..-...++.++.|+.+..
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444334434444444444455677777777653
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=86.59 E-value=0.18 Score=37.26 Aligned_cols=43 Identities=21% Similarity=0.462 Sum_probs=28.1
Q ss_pred cccccccccccceEEeCCCCcc----cCccccccc-----CCcCcccccccc
Q 018028 312 MLCRRCGEKESSVLLLPCRHLC----LCTVCGSCL-----IGSCPVCNFVVD 354 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlPCrHlc----lC~~C~~~l-----~~~CPvCR~~i~ 354 (362)
..|+||++....-+++||.+.- .=..|.... ...||+|+..+.
T Consensus 7 ~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 7 PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4799999876666788976421 112243322 478999998765
No 73
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.20 E-value=14 Score=30.90 Aligned_cols=86 Identities=10% Similarity=0.199 Sum_probs=65.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Q 018028 171 IAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTL 250 (362)
Q Consensus 171 i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~L 250 (362)
|+..+++|+..+++.|.....+--. .....-.-+.||..++..+..|..++|.|.+.|+..-+-++...+...++
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e-----~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQ-----SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 5667777887777777655443111 11112223458999999999999999999999999999999888888889
Q ss_pred HHHHHHHHHhc
Q 018028 251 RSNLEQVLAHV 261 (362)
Q Consensus 251 ra~LeQ~l~q~ 261 (362)
.+.+.+++...
T Consensus 83 E~k~n~aiErn 93 (111)
T 2v66_B 83 EQRLNQAIERN 93 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 74
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.78 E-value=6.4 Score=38.62 Aligned_cols=25 Identities=4% Similarity=0.154 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELEEQRKRQ 189 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~RqRh 189 (362)
.++.++|+.+.++.+..+.+.|.+-
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHh
Confidence 4556666666677776666666543
No 75
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.48 E-value=18 Score=30.66 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=53.3
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHhHHH---HHhhhHHHHHHHHHHHHHHH
Q 018028 153 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRK------RQSRMLISAIQEGVAN---KLKEKDEEIHRMRKLNWVLQ 223 (362)
Q Consensus 153 ~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~Rq------Rh~r~Ll~avE~~~~~---rLReKEeEIera~rrn~ELE 223 (362)
-|+|.++ +.=..+-++|+.|..+-...|.+.-- +-+..|-.+++...++ ++.+.+.||..++.+..+.+
T Consensus 14 ~dGLrAq--~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 14 RDGLRAV--MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566555 55567888998887777666665542 2233444555543333 46667777888877777777
Q ss_pred HHHHHHHHhhHHHH
Q 018028 224 ERVKSLFVENQIWR 237 (362)
Q Consensus 224 Erlrql~~E~QaWq 237 (362)
+.+.++..+++.-+
T Consensus 92 ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 92 AEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhchhhh
Confidence 77777777766443
No 76
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.45 E-value=2.7 Score=41.68 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=50.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 260 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q 260 (362)
-++.++++||+.+.++..+|++.++++..|.+.++......|..-..|+++++.+...
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4578899999999999999999999999999999999999998888888888877543
No 77
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=82.13 E-value=5.8 Score=31.29 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=31.2
Q ss_pred HHHHHHHHhHHHHHhhhH----HHHHHHHHHHHHHH-------HHHHHHHHhhHHHH
Q 018028 192 MLISAIQEGVANKLKEKD----EEIHRMRKLNWVLQ-------ERVKSLFVENQIWR 237 (362)
Q Consensus 192 ~Ll~avE~~~~~rLReKE----eEIera~rrn~ELE-------Erlrql~~E~QaWq 237 (362)
+|++|||..+-+||||+= +||+.+++-..||. +-+.++..|-..|+
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 478888888888888764 78888877766554 44555555555543
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.95 E-value=19 Score=35.32 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=43.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 260 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q 260 (362)
..+.+.|.+++++......++++++..|++.-+....+........+..++.+..+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 44555677777777788888888888888888888888888888888888776654
No 79
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.79 E-value=4.7 Score=30.08 Aligned_cols=35 Identities=34% Similarity=0.335 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLA 240 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A 240 (362)
.+-+.+++.+...|.+|+.++.+|..|.+.|..+-
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888889999999999999999999987764
No 80
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=76.92 E-value=0.68 Score=34.08 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=35.3
Q ss_pred cccccccccccceEEe-CCCCcccCccccccc---CCcCccccccccc
Q 018028 312 MLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL---IGSCPVCNFVVDA 355 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~l---~~~CPvCR~~i~~ 355 (362)
..|.+|++--.+=++. ||||. .|+.|-... ..+||+++.+.+.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 4799999988888888 99998 788886664 5679999988753
No 81
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.00 E-value=48 Score=30.37 Aligned_cols=51 Identities=10% Similarity=-0.034 Sum_probs=30.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLE 255 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~Le 255 (362)
+.+...||+.+.+++..+|+.+..+..+....+......++....++..|.
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777777766666555554444444444444443
No 82
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=74.89 E-value=21 Score=29.38 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=23.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018028 202 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 202 ~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~ 238 (362)
..|+|+.+.||+++++.|. .|..|+..|..
T Consensus 64 ~~~v~eLe~everL~~ENq-------~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENL-------QLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH-------HHHHHHHhhcc
Confidence 5788888888888888874 45678888864
No 83
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=72.59 E-value=4.4 Score=27.31 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 018028 208 KDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 208 KEeEIera~rrn~ELEErlrql~ 230 (362)
-..+|+.++|+|+-||++++.|+
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHHHHHHHHHHHHHHHHhcC
Confidence 34799999999999999998763
No 84
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=72.56 E-value=10 Score=31.64 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHH----HHHHHHHHHH
Q 018028 216 RKLNWVLQERVKSLFVENQIWRDLAQTNEATANT----LRSNLEQVLA 259 (362)
Q Consensus 216 ~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~----Lra~LeQ~l~ 259 (362)
-+++.+|..+..+|..|...|+.+.......++. |+.++.++..
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~ 49 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRA 49 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999998877765444 5555555443
No 85
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=72.34 E-value=0.98 Score=37.12 Aligned_cols=50 Identities=24% Similarity=0.635 Sum_probs=39.7
Q ss_pred CCCccccccccccccceEEeCCCCcccCccccccc---CCcCccccccccceEEE
Q 018028 308 GGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHV 359 (362)
Q Consensus 308 ~~~~~~C~iC~~~~a~vlLlPCrHlclC~~C~~~l---~~~CPvCR~~i~~~V~V 359 (362)
..+...|+.|.-...+.+ -|.--.+|..|-..+ .+.||+|..+....|+|
T Consensus 25 ~~G~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CSCCCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccCcccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 345567999999888655 476666999998887 79999999998877664
No 86
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=72.13 E-value=2.4 Score=33.26 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLA 240 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A 240 (362)
+|.|-++.+..||++++.+|+.||...+..|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3888999999999999999999998775553
No 87
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=70.45 E-value=21 Score=32.85 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Q 018028 175 TEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLR 251 (362)
Q Consensus 175 ~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lr 251 (362)
.++-|..|+|+||. +|-.+++ |.+++..++..|+|.+..+..|++.-+.+|..-+.+|..|.
T Consensus 95 se~YWk~lAE~RR~---AL~eaLe------------EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~ 156 (209)
T 2wvr_A 95 SSQYWKEVAEKRRK---ALYEALK------------ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIE 156 (209)
T ss_dssp CTTHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999864 3334444 66677777777777788888888888888777777765444
No 88
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.00 E-value=22 Score=28.15 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 018028 219 NWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 219 n~ELEErlrql~~E~QaWq~~ 239 (362)
...|+....|+..|-..|+.+
T Consensus 50 ~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334777777788888888766
No 89
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=69.88 E-value=3.5 Score=28.09 Aligned_cols=20 Identities=45% Similarity=0.629 Sum_probs=17.3
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQE 224 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEE 224 (362)
+-+|++||.+++.+|.+|.|
T Consensus 16 ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 16 IEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHh
Confidence 55799999999999999875
No 90
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=67.87 E-value=16 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=23.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
++|+.+.||.++-+....||-|++.|.
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999999988773
No 91
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.46 E-value=40 Score=28.77 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=22.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~~E~ 233 (362)
++.+...|++.+.+++.+|++++.+|..|.
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788888888888888888886554
No 92
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=66.12 E-value=33 Score=27.35 Aligned_cols=50 Identities=28% Similarity=0.342 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018028 176 EKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERV 226 (362)
Q Consensus 176 ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErl 226 (362)
++-|..|+|+||.-.-.-|.--+ ..-+.+-+|++||.+++..|.+|.+-.
T Consensus 19 e~YWk~lAE~Rr~AL~eaL~EN~-~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 19 SQYWKEVAEQRRKALYEALKENE-KLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577778877654333332222 123334455555555555555554433
No 93
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=65.06 E-value=12 Score=24.56 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018028 208 KDEEIHRMRKLNWVLQERVKSLFVENQI 235 (362)
Q Consensus 208 KEeEIera~rrn~ELEErlrql~~E~Qa 235 (362)
.|+|+.+++.-..+|++|+.+++.-.|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3668888888889999999988765554
No 94
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=65.05 E-value=46 Score=26.47 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018028 175 TEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVK 227 (362)
Q Consensus 175 ~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlr 227 (362)
.++-|..|+|+||.-...-|.--+ ..-.++-.+++||...+..|.+|.+-+.
T Consensus 26 se~YWk~lAE~RR~AL~eaL~EN~-~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 26 SSQYWKEVAEKRRKALYEALKENE-KLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888643332222221 2233344556666666655555554443
No 95
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=64.66 E-value=23 Score=25.90 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 018028 219 NWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 219 n~ELEErlrql~~E~QaWq~ 238 (362)
..+||+++..+..|+..++.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544443
No 96
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=63.66 E-value=33 Score=26.53 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=21.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 202 ANKLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 202 ~~rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
-.+|++|.+||++++...-.|..++-.-.
T Consensus 9 ~~kl~~Kq~EI~rLnvlvgslR~KLiKYt 37 (74)
T 2q6q_A 9 NFKLREKQNEIFELKKIAETLRSKLEKYV 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999887777766665443
No 97
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=62.95 E-value=29 Score=27.35 Aligned_cols=51 Identities=33% Similarity=0.474 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 176 EKVILELEEQRKRQSRMLISAIQE--GVANKLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 176 ErLR~~LeE~RqRh~r~Ll~avE~--~~~~rLReKEeEIera~rrn~ELEErlrql 229 (362)
++-|..|+|+||. +|-.++++ ..-+++-+|++||.++...|..|.+-+.++
T Consensus 15 e~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 15 SQYWKEVAEQRRK---ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp CTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777754 33344441 222345566666666666665555444333
No 98
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=62.30 E-value=7.5 Score=26.42 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=23.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
|+.+.|+.++.+-.++++||..+.+|..
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6777888899999999999987777753
No 99
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=61.29 E-value=37 Score=27.24 Aligned_cols=86 Identities=16% Similarity=0.221 Sum_probs=53.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHhhhh
Q 018028 172 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKL-KEKDEEIHRMRKLNWVLQERVKSLFVENQIW------RDLAQTNE 244 (362)
Q Consensus 172 ~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rL-ReKEeEIera~rrn~ELEErlrql~~E~QaW------q~~A~~nE 244 (362)
+...++++..+.+..+.|.+.|- +... ...+ ++-|.-+..+.++...+..+|+.+..++..- -...+-..
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~-~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 94 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILA-SPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRK 94 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-CSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 44556677777777777877643 2221 1122 2334556667777778888888887766531 11224566
Q ss_pred HHHHHHHHHHHHHHHh
Q 018028 245 ATANTLRSNLEQVLAH 260 (362)
Q Consensus 245 A~A~~Lra~LeQ~l~q 260 (362)
..+.+|...+..++..
T Consensus 95 ~q~~~L~~kf~e~m~~ 110 (127)
T 1ez3_A 95 TQHSTLSRKFVEVMSE 110 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888888887764
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.18 E-value=18 Score=28.15 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=19.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 236 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~~E~QaW 236 (362)
||+||+-|+...++..+.++.++.|..|.+-.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666666666666665555443
No 101
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.85 E-value=86 Score=27.47 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH----HHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQ----IWRDL 239 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~Q----aWq~~ 239 (362)
.|+..++-.+..+|++++++..|++ -|...
T Consensus 103 DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 103 AALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999994 46544
No 102
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=60.68 E-value=18 Score=25.43 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=24.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~ 233 (362)
+++-.-+.||++...+..+|+.++++|+..+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444567899999999999999999997543
No 103
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=59.83 E-value=77 Score=26.59 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=23.2
Q ss_pred CcccchHHHHHHHHhhhHHHHHHHHHhHHH
Q 018028 148 FSSLLDQDIIFRLQQQQSEIDRYIAQHTEK 177 (362)
Q Consensus 148 ~~s~l~~~l~~~l~qQ~~EID~~i~~q~Er 177 (362)
+.++.+|-|.-+|+|-+.|.|.+++.|.++
T Consensus 29 ~~~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 29 PFPVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778999999999999999999776
No 104
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.03 E-value=28 Score=36.15 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=15.5
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHH
Q 018028 159 RLQQQQSEIDRYIAQHTEKVILELEEQR 186 (362)
Q Consensus 159 ~l~qQ~~EID~~i~~q~ErLR~~LeE~R 186 (362)
+++|-..+++++++...|.||..+....
T Consensus 75 dlsKnsKdseqy~k~~~E~Lr~rq~q~~ 102 (562)
T 3ghg_A 75 EYQKNNKDSHSLTTNIMEILRGDFSSAN 102 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred HHHhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 3445555666666666666655444433
No 105
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=58.83 E-value=11 Score=25.55 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=21.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
|+.+.|+-+|.+..++++||..+.+|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566777788888888999988776664
No 106
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=56.66 E-value=78 Score=26.46 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=12.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELEEQR 186 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~R 186 (362)
..||+ |+..+++||..|+.-.
T Consensus 15 ~~Ie~-Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 15 HLIER-LYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHH
Confidence 34555 5566666666666554
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.66 E-value=1.1e+02 Score=38.34 Aligned_cols=13 Identities=8% Similarity=0.297 Sum_probs=6.9
Q ss_pred HHHhhhHHHHHHH
Q 018028 159 RLQQQQSEIDRYI 171 (362)
Q Consensus 159 ~l~qQ~~EID~~i 171 (362)
+|++-+.|.|.++
T Consensus 1949 ~L~~k~~ea~~~l 1961 (3245)
T 3vkg_A 1949 ELDVKNEQANQKL 1961 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555666554
No 108
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.24 E-value=53 Score=27.73 Aligned_cols=52 Identities=19% Similarity=0.419 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018028 175 TEKVILELEEQRKRQSRMLISAIQEGV---ANKLKEKDEEIHRMRKLNWVLQERVK 227 (362)
Q Consensus 175 ~ErLR~~LeE~RqRh~r~Ll~avE~~~---~~rLReKEeEIera~rrn~ELEErlr 227 (362)
.+-|+..|++..-+- ...+.-.+..+ -++|+++.+|+++.++.|.+|.-|+.
T Consensus 55 V~tL~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 55 VMALMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 345555555533222 22233333222 34577777777777777777766653
No 109
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.17 E-value=1.4e+02 Score=29.74 Aligned_cols=69 Identities=9% Similarity=0.082 Sum_probs=43.1
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHH-------------HHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 018028 159 RLQQQQSEIDRYIAQHTEKVILELEE-------------QRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQER 225 (362)
Q Consensus 159 ~l~qQ~~EID~~i~~q~ErLR~~LeE-------------~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEEr 225 (362)
.++|-..++++|++.=.+.||.-++. --++|+.-|-..|...+. .||....-|+..+.+...||..
T Consensus 78 ~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 78 NYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666665555554432 233455556666666665 7777777888888888888877
Q ss_pred HHH
Q 018028 226 VKS 228 (362)
Q Consensus 226 lrq 228 (362)
|+-
T Consensus 157 Id~ 159 (390)
T 1deq_A 157 IDI 159 (390)
T ss_pred HHH
Confidence 743
No 110
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=55.98 E-value=1.1e+02 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=24.5
Q ss_pred HHHHHhhhHHHHHHHHHhHH---HHHHHHHHHHH
Q 018028 157 IFRLQQQQSEIDRYIAQHTE---KVILELEEQRK 187 (362)
Q Consensus 157 ~~~l~qQ~~EID~~i~~q~E---rLR~~LeE~Rq 187 (362)
..+|++|-.|+...++.+.| |||+.-.|.++
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k 41 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSK 41 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45789999999999999866 78887777764
No 111
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.60 E-value=42 Score=28.14 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 018028 219 NWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 219 n~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~ 257 (362)
..+|+.++.+|.+|-..-+...+..-.-..-||.+++.+
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333222222223455555544
No 112
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=54.41 E-value=21 Score=23.25 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 207 EKDEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 207 eKEeEIera~rrn~ELEErlrql~~E~ 233 (362)
+.|.|+.++...|-+||..+.|+..||
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 345677788888888888888888776
No 113
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=53.67 E-value=1.8 Score=43.16 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=29.8
Q ss_pred cccccccccccc---eE-----EeCCCCcccCccccccc--------------CCcCccccccccceEE
Q 018028 312 MLCRRCGEKESS---VL-----LLPCRHLCLCTVCGSCL--------------IGSCPVCNFVVDASLH 358 (362)
Q Consensus 312 ~~C~iC~~~~a~---vl-----LlPCrHlclC~~C~~~l--------------~~~CPvCR~~i~~~V~ 358 (362)
..|.||++.-.. +- -.+|+|. .=..|-... .+.||.||.+|+.+..
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred ccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 479999975433 11 1357777 456665332 2689999999987654
No 114
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=52.31 E-value=1.6e+02 Score=30.57 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=33.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH------Hhh--HHHHHH---HhhhhHHHHHHHHHHHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLF------VEN--QIWRDL---AQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~------~E~--QaWq~~---A~~nEA~A~~Lra~LeQ~l~ 259 (362)
+-+...|++.+++..+++..-..+.. +|+ ..||.- |+-...-++.+.+.++.+..
T Consensus 351 ~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~~ 416 (551)
T 2b5u_A 351 YNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAK 416 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHHHhh
Confidence 34444578888888888887777766 333 479984 34434445555555555543
No 115
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=51.27 E-value=90 Score=24.75 Aligned_cols=30 Identities=27% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~ 239 (362)
.+++.+.+.|..|..+|.+|..|.+.++.+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777776666655443
No 116
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=51.25 E-value=37 Score=30.02 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=19.3
Q ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 198 QEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 198 E~~~~~rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
.+.+..+|.+.|..++.++ ..|||+|++..
T Consensus 7 ~ee~~e~L~~~e~l~~el~---~tWeeKl~~te 36 (184)
T 4egx_A 7 SEEAIERLKETEKIIAELN---ETWEEKLRRTE 36 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH---hHHHHHHHHHH
Confidence 3445567777777666654 37888887653
No 117
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.84 E-value=25 Score=36.33 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 018028 173 QHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 252 (362)
Q Consensus 173 ~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra 252 (362)
++.+||+..=.|.|.| .-+|+.-..+-++.-++++ ++..||++|++++..|...|+......+.+|.-|-.
T Consensus 300 ~e~qqm~~~a~e~~~~------~~~e~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e 370 (575)
T 2i1j_A 300 IDVQQMKAQAREEKLA------KQAQREKLQLEIAARERAE---KKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEE 370 (575)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHTTCCSCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4467777666655533 2334332222222222333 334566677777776666666666655555554444
Q ss_pred HH
Q 018028 253 NL 254 (362)
Q Consensus 253 ~L 254 (362)
.+
T Consensus 371 ~~ 372 (575)
T 2i1j_A 371 QL 372 (575)
T ss_dssp --
T ss_pred HH
Confidence 33
No 118
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.12 E-value=73 Score=23.34 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLA 240 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A 240 (362)
-+-+.+.+.+...|.+|...+.+|..|.+.|..+-
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777777777776553
No 119
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=49.53 E-value=39 Score=31.26 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHH
Q 018028 212 IHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANT 249 (362)
Q Consensus 212 Iera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~ 249 (362)
+++.+.||.+||+++++|. ..|++|++....
T Consensus 74 ~~~LR~r~~~Le~~L~~Li-------~~A~~Ne~l~~~ 104 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLM-------DVARENDRLFDK 104 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 4555556666777776664 444455554433
No 120
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=49.22 E-value=8.7 Score=37.02 Aligned_cols=42 Identities=19% Similarity=0.440 Sum_probs=31.5
Q ss_pred cccccccccccceEEeC----CCC-cccCccccccc---CCcCccccccc
Q 018028 312 MLCRRCGEKESSVLLLP----CRH-LCLCTVCGSCL---IGSCPVCNFVV 353 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLlP----CrH-lclC~~C~~~l---~~~CPvCR~~i 353 (362)
..|++|++.+.-.++.. =|+ +..|.-|+... -..||.|....
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 37999999988776652 233 45799998765 68999999873
No 121
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=48.65 E-value=74 Score=23.01 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~E~QaWq~~ 239 (362)
.+-+.+.+.+...|.+|...+..|..|...|+..
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777888888888888777777654
No 122
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.31 E-value=1.4e+02 Score=30.53 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhH-------HHHHHHHHHHHH
Q 018028 154 QDIIFRLQQQQS-----EIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKD-------EEIHRMRKLNWV 221 (362)
Q Consensus 154 ~~l~~~l~qQ~~-----EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKE-------eEIera~rrn~E 221 (362)
+.+...+++-+. .||.++.+..++ |....+.. ..++--+++...+++..+.++ ++++.+..+..+
T Consensus 51 ~~v~~~l~~R~~~~~~~~~~~~~~ld~~~-r~~~~~~~--~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (501)
T 1wle_A 51 EDAARALDLRKGELRSKDLPGIISTWQEL-RQLREQIR--SLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGRE 127 (501)
T ss_dssp HHHHHHHHHHTCSCCGGGHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchhHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHH
Confidence 334445554443 278888776433 22222111 112222445555554444432 456666666666
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Q 018028 222 LQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHVGG 263 (362)
Q Consensus 222 LEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~~~ 263 (362)
|.++++.+. +....+..+|+..+.....
T Consensus 128 l~~~i~~l~--------------~~~~~~~~~l~~~l~~iPN 155 (501)
T 1wle_A 128 IRKQLTLLY--------------PKEAQLEEQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHH--------------HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHhCCC
Confidence 666666553 3333455667777776655
No 123
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.11 E-value=2.7e+02 Score=29.03 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=47.2
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHhhhHHHHHH-HHHHHHHHHHHHHHH
Q 018028 153 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQ--SRMLISAIQEGVANKLKEKDEEIHR-MRKLNWVLQERVKSL 229 (362)
Q Consensus 153 ~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh--~r~Ll~avE~~~~~rLReKEeEIer-a~rrn~ELEErlrql 229 (362)
|=.|-.-|.+|..++... +++||..+++..|-+ .-+....+-....+++.+-. +.+. .+.-..|||.++.-|
T Consensus 48 GCrLQglLdkqErDltkr----INELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyL 122 (562)
T 3ghg_A 48 GCRMKGLIDEVNQDFTNR----INKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVL 122 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHH
T ss_pred ccchhhhHHhhcCcHHHH----HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHH
Confidence 334555566666666554 467777777762221 12222333333334444333 2232 233334777777766
Q ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 018028 230 FVENQIWRDLAQTNEATANTLRSNLEQVLAH 260 (362)
Q Consensus 230 ~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q 260 (362)
..+.+. +-..+..|+++|+.++.+
T Consensus 123 KekVdn-------QlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 123 KRKVIE-------KVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 654443 223445566666655443
No 124
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=46.48 E-value=1e+02 Score=25.38 Aligned_cols=22 Identities=18% Similarity=-0.017 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 018028 216 RKLNWVLQERVKSLFVENQIWR 237 (362)
Q Consensus 216 ~rrn~ELEErlrql~~E~QaWq 237 (362)
..+..+|+..+++|..|||.-.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999987653
No 125
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=46.37 E-value=1.7e+02 Score=26.40 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=49.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
+-..+.||...+..+..|..+++.|.+.|+.--+..+...+....+...|.+++...
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344566899999999999999999999999999999999998899999999988765
No 126
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=45.43 E-value=99 Score=34.46 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlrql~~ 231 (362)
.+.+++++++..+..+|+++++.+..
T Consensus 909 ~~~e~~l~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 909 AEAEEMRVRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 127
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.37 E-value=2.5e+02 Score=28.08 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=57.5
Q ss_pred hHHHHH------HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHH----HHHHHHHH
Q 018028 153 DQDIIF------RLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHR----MRKLNWVL 222 (362)
Q Consensus 153 ~~~l~~------~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIer----a~rrn~EL 222 (362)
++|+-. .|+.--++.|+=|+..+++|+..|.+..+-|........+ +...||++...+.. ...-+.+|
T Consensus 41 DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~--~~~~lk~~~~q~~dndn~~~e~s~eL 118 (390)
T 1deq_A 41 DEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKN--IVELMRGDFAKANNNDNTFKQINEDL 118 (390)
T ss_pred hhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhhccchHHHHHHHHHH
Confidence 555544 4666667777888999999999999998877654433322 23344444333332 23334445
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 018028 223 QERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHV 261 (362)
Q Consensus 223 EErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~ 261 (362)
|.++.-| |.....+-.-...|+..|+.++.+.
T Consensus 119 e~~i~~l-------k~~V~~q~~~ir~Lq~~l~~q~~ki 150 (390)
T 1deq_A 119 RSRIEIL-------RRKVIEQVQRINLLQKNVRDQLVDM 150 (390)
T ss_pred HHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5444333 2333334445566777766665543
No 128
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.04 E-value=42 Score=25.99 Aligned_cols=22 Identities=27% Similarity=0.213 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 018028 206 KEKDEEIHRMRKLNWVLQERVK 227 (362)
Q Consensus 206 ReKEeEIera~rrn~ELEErlr 227 (362)
++|++||..--.++.+||.++.
T Consensus 29 ~~K~eELr~kd~~I~eLEk~L~ 50 (72)
T 3nmd_A 29 QEKIEELRQRDALIDELELELD 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 129
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=44.79 E-value=1.1e+02 Score=26.26 Aligned_cols=86 Identities=10% Similarity=0.222 Sum_probs=46.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHhhhh
Q 018028 172 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKL-KEKDEEIHRMRKLNWVLQERVKSLFVENQI------WRDLAQTNE 244 (362)
Q Consensus 172 ~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rL-ReKEeEIera~rrn~ELEErlrql~~E~Qa------Wq~~A~~nE 244 (362)
+...++++..+.+..+.|.+.|...-.. ..+ ++-+.-+..+++....+..+|+.+..++.. +....+-..
T Consensus 49 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~---~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 125 (180)
T 1s94_A 49 RAMIDKISDNVDAVKKKHSDILSAPQTD---DQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRK 125 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 4455666677777777776655432221 122 223334455666667777777777755421 111123344
Q ss_pred HHHHHHHHHHHHHHHh
Q 018028 245 ATANTLRSNLEQVLAH 260 (362)
Q Consensus 245 A~A~~Lra~LeQ~l~q 260 (362)
....+|...+..++..
T Consensus 126 ~q~~~L~~kf~~~m~~ 141 (180)
T 1s94_A 126 TQYSTISRKFVEVMSD 141 (180)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667888888877653
No 130
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.68 E-value=72 Score=28.26 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=12.1
Q ss_pred hhhHHHHHHHH---HhHHHHHHHHHHHH
Q 018028 162 QQQSEIDRYIA---QHTEKVILELEEQR 186 (362)
Q Consensus 162 qQ~~EID~~i~---~q~ErLR~~LeE~R 186 (362)
.|+.+|+.+.+ .+...+|..+.++|
T Consensus 71 EQq~ql~~I~~e~r~~~~~Lr~ql~akr 98 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQTSALRQQLISKR 98 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555543 33444455555444
No 131
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.37 E-value=2.6e+02 Score=35.17 Aligned_cols=14 Identities=29% Similarity=0.441 Sum_probs=7.2
Q ss_pred cceEEEeeccccee
Q 018028 32 KSHFFFFSSSNMAV 45 (362)
Q Consensus 32 ~~~~~~~~~~~mav 45 (362)
+.-.|+|.=++..-
T Consensus 1704 ~~~vFL~tD~qi~~ 1717 (3245)
T 3vkg_A 1704 EKICFIFDESNVLE 1717 (3245)
T ss_dssp CCEEEEEEGGGCSS
T ss_pred CCEEEEEecccccc
Confidence 44456665555433
No 132
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.04 E-value=72 Score=24.34 Aligned_cols=7 Identities=57% Similarity=0.814 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 018028 185 QRKRQSR 191 (362)
Q Consensus 185 ~RqRh~r 191 (362)
+|+.|+|
T Consensus 11 kR~~qNR 17 (70)
T 1gd2_E 11 KRKAQNR 17 (70)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 133
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.40 E-value=1.3e+02 Score=23.89 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=42.1
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018028 152 LDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 231 (362)
Q Consensus 152 l~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~ 231 (362)
|.|-+++.|++ =|+|-.|+..|...|++.+++....+=..-| .....||. .|+.+...++.|+-.+..+..
T Consensus 14 LNdRlAsyIdK-----VR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye-~~i~~Lr~---~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 14 LNDRFANLIDK-----VRFLEQQNKILLAELEQLKGQGKSRLGDLYE-EEMRELRR---QVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccCCCcHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45667777655 3566777777777777666554322211112 22233333 566666666666666666655
Q ss_pred hhHHHH
Q 018028 232 ENQIWR 237 (362)
Q Consensus 232 E~QaWq 237 (362)
+...++
T Consensus 85 ~~~~~k 90 (93)
T 3s4r_A 85 DIMRLR 90 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 134
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=41.87 E-value=1.1e+02 Score=24.78 Aligned_cols=44 Identities=30% Similarity=0.302 Sum_probs=26.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~ 257 (362)
.-.++-++||.++.++...||.-.. +.-.|+ ..|+.|.++|+.-
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE~iqs----~aK~LR-------nKA~~L~~eLe~F 90 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLEKMQN----NSKLLR-------NKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHH-------HHHHHHHHHHHHH
Confidence 3346677788888888877774332 223343 3345666677654
No 135
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.40 E-value=34 Score=22.82 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=17.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
||-+.|+.++.+..+|.+||..+.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345566677777777777777666653
No 136
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=41.33 E-value=11 Score=33.00 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=13.8
Q ss_pred CCcCccccccccceEEE
Q 018028 343 IGSCPVCNFVVDASLHV 359 (362)
Q Consensus 343 ~~~CPvCR~~i~~~V~V 359 (362)
...||+|..++..+..+
T Consensus 153 p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 153 PEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp CSBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCCHHHceec
Confidence 67999999998876654
No 137
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=41.18 E-value=1.2e+02 Score=23.58 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~ 238 (362)
.+++.+.+.|..|..+|.+|..|...++.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677777777777766666543
No 138
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=39.53 E-value=49 Score=23.91 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018028 202 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 202 ~~rLReKEeEIera~rrn~ELEErlrql~~E 232 (362)
..|+++...++..+..+|..|.+-|+....|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888776433
No 139
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=39.46 E-value=35 Score=22.88 Aligned_cols=27 Identities=4% Similarity=0.188 Sum_probs=18.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
||.+.|+..|.+-.+|.+||..+.++.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566677777777778888887766653
No 140
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=38.98 E-value=36 Score=22.81 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=17.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLF 230 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~ 230 (362)
|+.+.|.-+|.+..+|.+||..+.+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556666667777777777777666653
No 141
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=37.68 E-value=44 Score=22.30 Aligned_cols=25 Identities=4% Similarity=0.256 Sum_probs=15.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrql 229 (362)
|.+.|+-+|.+-.+|.+||..+.++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4455556666666667776666555
No 142
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=37.60 E-value=41 Score=22.45 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=17.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql 229 (362)
||.+.|.-+|....++.+|+..+.++
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35566667777777777777766655
No 143
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=37.35 E-value=3.3e+02 Score=27.25 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=59.9
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHH-HHHHH------
Q 018028 153 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNW-VLQER------ 225 (362)
Q Consensus 153 ~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~-ELEEr------ 225 (362)
+=+|+..|-+|...||.=|+.=...|. .| +..-.-...+|.++.....++-+.+..-|+-+.++.. .|||.
T Consensus 22 tCgl~d~L~kye~~V~~~l~~L~~~l~-~i-sn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~ 99 (411)
T 3ghg_C 22 TCGIADFLSTYQTKVDKDLQSLEDILH-QV-ENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEAS 99 (411)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhccchhhHHHHHHHHHH-HH-HhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 346777888999999886653322222 22 2344556678888887777776666555566666655 33332
Q ss_pred HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 226 VKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 226 lrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
+......-+.-|..+..|...+..|+..+.++..
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 100 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222234555667777666655555554444
No 144
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.18 E-value=1.2e+02 Score=22.35 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q 018028 218 LNWVLQERVKSLFVENQIW 236 (362)
Q Consensus 218 rn~ELEErlrql~~E~QaW 236 (362)
+..+||.++.+|..|+..+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L 49 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666665555543
No 145
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.11 E-value=1.8e+02 Score=23.88 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 018028 211 EIHRMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~~E 232 (362)
++..+..+...||+.+.++..+
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4555555555666665555443
No 146
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.97 E-value=48 Score=22.25 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=14.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql 229 (362)
||-+.|+-++.+-.+|.+|+..+.+|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444555555555566666555554
No 147
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.84 E-value=1e+02 Score=30.55 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018028 207 EKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVL 258 (362)
Q Consensus 207 eKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l 258 (362)
+.++|++.+..+..+|++.++++..|...-...-...+..-..|+++++.+.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455666777777777777777766666655544444444455666665553
No 148
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=35.33 E-value=1.7e+02 Score=23.32 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=32.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHhhhhHHHHHHHHHHHH
Q 018028 203 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD-------LAQTNEATANTLRSNLEQ 256 (362)
Q Consensus 203 ~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~-------~A~~nEA~A~~Lra~LeQ 256 (362)
.+..++|.||..+++|+..+|+.+.++...-..=+. .+...|+-+.+|...++.
T Consensus 37 ~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 37 ERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888888888888877766533332222 234445556666655544
No 149
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.09 E-value=50 Score=24.06 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=27.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD 238 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~ 238 (362)
++.+.+.+++.+...|.+|...+.+|..|......
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788889999999999999999888765443
No 150
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.85 E-value=3.2e+02 Score=26.45 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=4.5
Q ss_pred HHhhhHHHHHH
Q 018028 160 LQQQQSEIDRY 170 (362)
Q Consensus 160 l~qQ~~EID~~ 170 (362)
+++.+.|+++.
T Consensus 365 l~~~~~~le~~ 375 (487)
T 3oja_A 365 LEQKKKALDEQ 375 (487)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 151
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=34.04 E-value=2.1e+02 Score=23.98 Aligned_cols=12 Identities=8% Similarity=0.219 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHH
Q 018028 207 EKDEEIHRMRKL 218 (362)
Q Consensus 207 eKEeEIera~rr 218 (362)
|-|.|+++++++
T Consensus 65 e~e~E~ae~k~K 76 (115)
T 3vem_A 65 ELERKMAEVQAE 76 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555554
No 152
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=33.65 E-value=3e+02 Score=25.77 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=62.7
Q ss_pred HHHHHhhhHHHHHHHHH-----------hHHHHH---------HHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHH
Q 018028 157 IFRLQQQQSEIDRYIAQ-----------HTEKVI---------LELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMR 216 (362)
Q Consensus 157 ~~~l~qQ~~EID~~i~~-----------q~ErLR---------~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~ 216 (362)
.-.+.+|..|+|-+-+- |+..+- ..+.+....|..+++..++ ++-++|.+.-.
T Consensus 31 ~Kl~KKQqKEl~~LkKKH~Ke~~~lqK~~~~~~~~~s~~~~~~~kv~el~~~q~~el~~l~~-------~q~~eE~~~k~ 103 (251)
T 1jad_A 31 LKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGE-------EYHDGIRRRKE 103 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 34567888888888773 333331 2345666666667666666 44667888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHh--hhhHHHHHHHHHHH
Q 018028 217 KLNWVLQERVKSLFVENQIWRDLAQ--TNEATANTLRSNLE 255 (362)
Q Consensus 217 rrn~ELEErlrql~~E~QaWq~~A~--~nEA~A~~Lra~Le 255 (362)
.+..+..++|+.|..|+|+=|-.+. .+|.-...|+..++
T Consensus 104 ~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~ 144 (251)
T 1jad_A 104 QHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLE 144 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999887664 34444444555544
No 153
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=33.54 E-value=16 Score=32.44 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.0
Q ss_pred CCcCccccccccceEE
Q 018028 343 IGSCPVCNFVVDASLH 358 (362)
Q Consensus 343 ~~~CPvCR~~i~~~V~ 358 (362)
...||+|..++..+..
T Consensus 171 p~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 171 PELCPACAHPKAHFEL 186 (191)
T ss_dssp CSBCTTTCCBGGGEEE
T ss_pred CCCCCCCcCCHHHHHh
Confidence 5699999999887654
No 154
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.34 E-value=2.3e+02 Score=28.28 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=37.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHH
Q 018028 167 IDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEAT 246 (362)
Q Consensus 167 ID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~ 246 (362)
+|.++.+..++ |..+.+.. ..++--+++...+++..+++ ++.+.+..+..+|.++++.+ |+.
T Consensus 30 ~~~~~~l~~~~-r~~~~~~~--~l~~~~n~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~--------------~~~ 91 (455)
T 2dq0_A 30 VDEILKLDTEW-RTKLKEIN--RLRHERNKIAVEIGKRRKKG-EPVDELLAKSREIVKRIGEL--------------ENE 91 (455)
T ss_dssp HHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHTSC-CCTHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred HHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 67777765433 22221111 11122244444454433333 34444445555555555544 333
Q ss_pred HHHHHHHHHHHHHhcCC
Q 018028 247 ANTLRSNLEQVLAHVGG 263 (362)
Q Consensus 247 A~~Lra~LeQ~l~q~~~ 263 (362)
...+..+|+..+.....
T Consensus 92 ~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 92 VEELKKKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34456677777777655
No 155
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=32.96 E-value=3.3e+02 Score=27.11 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=10.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 018028 237 RDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 237 q~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
+..-.+++..+..|+..+.++..
T Consensus 111 ~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 111 TDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 33334455555555544444433
No 156
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=32.76 E-value=1.1e+02 Score=26.25 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql 229 (362)
.|-..++++..++|.|++.|
T Consensus 46 aeY~aak~~q~~~e~rI~~L 65 (158)
T 2p4v_A 46 ADYQYNKKRLREIDRRVRYL 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554
No 157
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=32.59 E-value=54 Score=21.96 Aligned_cols=26 Identities=0% Similarity=0.205 Sum_probs=15.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql 229 (362)
||-+.|+-+|.+-.+|.+||..+.+|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44555566666666666666655554
No 158
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=32.36 E-value=21 Score=25.73 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=12.5
Q ss_pred cCccccccccceEEE
Q 018028 345 SCPVCNFVVDASLHV 359 (362)
Q Consensus 345 ~CPvCR~~i~~~V~V 359 (362)
.||+|...+..+..|
T Consensus 38 ~CP~Cg~~K~~F~~~ 52 (52)
T 1e8j_A 38 ACPVCGASKDAFEKQ 52 (52)
T ss_dssp CCSSSCCCTTSCEEC
T ss_pred cCCCCCCcHHHcEEC
Confidence 799999999887653
No 159
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.02 E-value=1.4e+02 Score=23.32 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 018028 211 EIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~~E~ 233 (362)
-++.+..+|.+||++|+.+...-
T Consensus 14 klq~~E~rN~~Le~~v~~le~~L 36 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSL 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34445667888888888776443
No 160
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=31.88 E-value=10 Score=29.45 Aligned_cols=29 Identities=21% Similarity=0.627 Sum_probs=21.1
Q ss_pred ccccccccc---ccceEEeCCCCcccCcccccc
Q 018028 312 MLCRRCGEK---ESSVLLLPCRHLCLCTVCGSC 341 (362)
Q Consensus 312 ~~C~iC~~~---~a~vlLlPCrHlclC~~C~~~ 341 (362)
..|.+|.+. ++...-++|+|. +|..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 479999963 333333899998 89999764
No 161
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.77 E-value=2.5e+02 Score=28.61 Aligned_cols=77 Identities=21% Similarity=0.370 Sum_probs=37.1
Q ss_pred HHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 018028 167 IDRYIAQHTEK--VILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNE 244 (362)
Q Consensus 167 ID~~i~~q~Er--LR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nE 244 (362)
+|.++.+..++ +...+++.|.+ .+++...+++..++++ +++.+..+..+|.++++.+ |
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~-----rn~~sk~i~~~k~~~~-~~~~l~~~~~~l~~~i~~l--------------e 91 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKK-----LNSVQKEIGKRFKAKE-DAKDLIAEKEKLSNEKKEI--------------I 91 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHH--------------H
Confidence 78888775432 22222222222 2444444444434332 3444444444555555444 2
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 018028 245 ATANTLRSNLEQVLAHVGG 263 (362)
Q Consensus 245 A~A~~Lra~LeQ~l~q~~~ 263 (362)
+....+..+|+..+.....
T Consensus 92 ~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 92 EKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 3333455667777766654
No 162
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.56 E-value=23 Score=27.12 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=22.9
Q ss_pred cccccccccccceEEe-CCCCcccCccccccc---C--CcCccccccccce
Q 018028 312 MLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL---I--GSCPVCNFVVDAS 356 (362)
Q Consensus 312 ~~C~iC~~~~a~vlLl-PCrHlclC~~C~~~l---~--~~CPvCR~~i~~~ 356 (362)
..|.||++--..-.-. .|+|. +=..|..+. . .+||+||......
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 3688888754321110 23333 122333211 2 7899999887643
No 163
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=31.35 E-value=57 Score=21.87 Aligned_cols=26 Identities=4% Similarity=0.259 Sum_probs=16.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql 229 (362)
||.+.|.-+|.+-.++.+|+..+.++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 45566666666777777777666555
No 164
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=31.24 E-value=95 Score=26.42 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql 229 (362)
.|-..++.+-..+|.|++.|
T Consensus 46 aey~aak~~q~~~e~ri~~L 65 (156)
T 2f23_A 46 SGLEAAKQEKARIEARIDSL 65 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34444444444555554444
No 165
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.92 E-value=2.2e+02 Score=23.40 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E 232 (362)
.++..+..+...||+.+.++..+
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666555443
No 166
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.69 E-value=2.2e+02 Score=23.30 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 018028 208 KDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 208 KEeEIera~rrn~ELEErlrql 229 (362)
.+.||+.+..++..||..++.+
T Consensus 48 L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 48 LRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555555555555555443
No 167
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=30.00 E-value=2e+02 Score=22.54 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTL 250 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~L 250 (362)
+|-+++....-++++.+..+..|+..-+.+|..-+.+|..|
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl 74 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566666666666655555555433
No 168
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=29.66 E-value=2.1e+02 Score=22.62 Aligned_cols=54 Identities=19% Similarity=0.146 Sum_probs=32.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHhhhhHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSLFVENQIW-------RDLAQTNEATANTLRSNLEQV 257 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql~~E~QaW-------q~~A~~nEA~A~~Lra~LeQ~ 257 (362)
+..++++||..+.+++..|++.+..+......- ...+...|+-+.+|...++.+
T Consensus 38 ~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 38 RCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777665544322221 224455677777777766543
No 169
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=29.63 E-value=65 Score=21.61 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=17.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 204 KLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 204 rLReKEeEIera~rrn~ELEErlrql 229 (362)
||.+-|..+|....++.+|+..+.++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55666666667777777777666555
No 170
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=29.46 E-value=50 Score=23.85 Aligned_cols=23 Identities=26% Similarity=0.435 Sum_probs=18.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Q 018028 202 ANKLKEKDEEIHRMRKLNWVLQE 224 (362)
Q Consensus 202 ~~rLReKEeEIera~rrn~ELEE 224 (362)
-+++++.|.++.++++++..|||
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 35577888888888888888886
No 171
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=29.40 E-value=20 Score=32.11 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.0
Q ss_pred CCcCccccccccceEE
Q 018028 343 IGSCPVCNFVVDASLH 358 (362)
Q Consensus 343 ~~~CPvCR~~i~~~V~ 358 (362)
...||+|..++..+..
T Consensus 186 p~~CP~C~~~k~~F~~ 201 (202)
T 1yuz_A 186 FEKCPICFRPKDTFTA 201 (202)
T ss_dssp CSBCTTTCCBGGGCEE
T ss_pred CCCCCCCCCChHHhee
Confidence 4699999999887654
No 172
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=29.25 E-value=1.9e+02 Score=22.15 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 209 DEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 209 EeEIera~rrn~ELEErlrql~~E~ 233 (362)
+.++..+..+...||+.+.++..+-
T Consensus 25 ~~~~~~~q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777776665543
No 173
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.98 E-value=1.4e+02 Score=23.68 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Q 018028 215 MRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSN 253 (362)
Q Consensus 215 a~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~ 253 (362)
.+.+..+++.++..|..||..-+.....-+..+..|+.-
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888999999988877765555544444433
No 174
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.70 E-value=2e+02 Score=22.11 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 018028 211 EIHRMRKLNWVLQERVKSLFVE 232 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~~E 232 (362)
-++.+..+|.+||++|+.+...
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~ 29 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQR 29 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3444556778888888777643
No 175
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=28.53 E-value=1e+02 Score=22.38 Aligned_cols=41 Identities=10% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHH
Q 018028 171 IAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRM 215 (362)
Q Consensus 171 i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera 215 (362)
+..|..-++..|+++++..--.=|..+| .=|||.+.||++.
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le----~NLrEL~~ei~~~ 47 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQ----ENLRQLQDEYDQQ 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHH----HHHHHHHHHHHHH
Confidence 4556667777777776543333333333 2255555555544
No 176
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=28.26 E-value=21 Score=27.31 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=13.1
Q ss_pred cCccccccccceEEE
Q 018028 345 SCPVCNFVVDASLHV 359 (362)
Q Consensus 345 ~CPvCR~~i~~~V~V 359 (362)
.||+|...+..+..+
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 799999999888765
No 177
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.03 E-value=1.8e+02 Score=28.62 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 018028 248 NTLRSNLEQVLAHVGG 263 (362)
Q Consensus 248 ~~Lra~LeQ~l~q~~~ 263 (362)
..+..+|+..+.....
T Consensus 92 ~~~~~~~~~~~~~ipN 107 (425)
T 2dq3_A 92 RKVEEELKNTLLWIPN 107 (425)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3345566666666654
No 178
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=27.95 E-value=2.4e+02 Score=22.82 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=5.7
Q ss_pred HHhhhHHHHHHH
Q 018028 160 LQQQQSEIDRYI 171 (362)
Q Consensus 160 l~qQ~~EID~~i 171 (362)
|-+|..|+.-.+
T Consensus 23 L~kQk~eL~~~l 34 (101)
T 1d7m_A 23 LIKQKDQLNSLL 34 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 179
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.60 E-value=1.1e+02 Score=22.06 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIW 236 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaW 236 (362)
.|++.+++.|.+|..++..|..+.+.-
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666665554443
No 180
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=27.41 E-value=90 Score=23.97 Aligned_cols=41 Identities=10% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHH
Q 018028 171 IAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRM 215 (362)
Q Consensus 171 i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera 215 (362)
+..|..-++..|+++|+.---.=|..+| .=|||.++||++.
T Consensus 25 L~EQ~~~I~~yI~qAk~~~r~DEV~tLe----~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRTLQ----ENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHHHHHHHH
Confidence 4445566666677766543333333444 2355555555544
No 181
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=27.34 E-value=76 Score=23.70 Aligned_cols=43 Identities=7% Similarity=0.162 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHH
Q 018028 169 RYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRM 215 (362)
Q Consensus 169 ~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera 215 (362)
..+..|..-++..|.++|+.---.=|..++ .=|||.+.|+.+.
T Consensus 12 dpL~EQi~~I~~yI~qAk~~~R~DEV~~Le----~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLT----ENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHcCChHHHHHHH----HHHHHHHHHHHHH
Confidence 367778888888888888654333334444 2355555555544
No 182
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.97 E-value=1.9e+02 Score=21.19 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 018028 218 LNWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 252 (362)
Q Consensus 218 rn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra 252 (362)
+..+|+.+++.|..++......+..-+.-+..|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777766655444444444443
No 183
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=26.84 E-value=1.4e+02 Score=25.40 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018028 210 EEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql 229 (362)
.|-..++++-..+|.|++.|
T Consensus 46 aeY~aak~~q~~~e~ri~~L 65 (158)
T 1grj_A 46 AEYHAAREQQGFCEGRIKDI 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHH
Confidence 34444444445555555444
No 184
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=26.64 E-value=1.3e+02 Score=27.46 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018028 165 SEIDRYIAQHTEKVILELEEQRKRQSR 191 (362)
Q Consensus 165 ~EID~~i~~q~ErLR~~LeE~RqRh~r 191 (362)
.|++.+ ..+.+.|...+++.+.+..|
T Consensus 59 ~e~~~l-~~~l~~l~~e~~el~d~~lR 84 (213)
T 4ani_A 59 EELAAA-KAQIAELEAKLSEMEHRYLR 84 (213)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 456543 55667777777666655444
No 185
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=25.78 E-value=2.7e+02 Score=22.70 Aligned_cols=79 Identities=9% Similarity=0.221 Sum_probs=41.4
Q ss_pred HHHHHHhhhHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018028 156 IIFRLQQQQSEIDRY------IAQHTEKVILELEEQRKRQSRMLIS--AIQEGVANKLKEKDEEIHRMRKLNWVLQERVK 227 (362)
Q Consensus 156 l~~~l~qQ~~EID~~------i~~q~ErLR~~LeE~RqRh~r~Ll~--avE~~~~~rLReKEeEIera~rrn~ELEErlr 227 (362)
.-.+|..-+..||.. |.++.+.++..+++-|.+.-..+-. .+|.. ...||. +++.+.-...+||.++.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~d-i~~lrK---~lD~~~l~r~dLE~~ie 93 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT-LQSFRQ---DVDNASLARLDLERKVE 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhhh---cccHHHHHHHHHHHHHH
Confidence 334454445555544 4566778888888887665443321 12211 112221 33344444567777777
Q ss_pred HHHHhhHHHHH
Q 018028 228 SLFVENQIWRD 238 (362)
Q Consensus 228 ql~~E~QaWq~ 238 (362)
.|..|-.--+.
T Consensus 94 sL~eEl~FLKk 104 (119)
T 3ol1_A 94 SLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666555443
No 186
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.53 E-value=59 Score=33.59 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=13.8
Q ss_pred HhHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHhhhhH
Q 018028 199 EGVANKLKEKDEEIHRMRKLNWV-------LQERVKSLFVENQIWRDLAQTNEA 245 (362)
Q Consensus 199 ~~~~~rLReKEeEIera~rrn~E-------LEErlrql~~E~QaWq~~A~~nEA 245 (362)
.....||++.++|..+++....+ |+|..+++..|..--...+.+.|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~ 391 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQA 391 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446677777666666655444 445555555555444444444443
No 187
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.21 E-value=53 Score=30.99 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=32.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018028 202 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 259 (362)
Q Consensus 202 ~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~ 259 (362)
..|+++++.+++.+..+|..|.+.++.+..|. ..|+.+|+++..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El--------------~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQL--------------LALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH--------------HHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhcC
Confidence 46788888899999888888888888875443 345666666543
No 188
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=25.00 E-value=3.8e+02 Score=28.00 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQT 242 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A~~ 242 (362)
.+.+.+..+..+|.++|.+|....+.++..-..
T Consensus 443 ~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~ 475 (863)
T 1sjj_A 443 YDSPSVNARCQKICDQWDNLGALTQKRREALER 475 (863)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888777776655433
No 189
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=24.52 E-value=2e+02 Score=21.30 Aligned_cols=14 Identities=50% Similarity=0.745 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHH
Q 018028 206 KEKDEEIHRMRKLN 219 (362)
Q Consensus 206 ReKEeEIera~rrn 219 (362)
-+||.||+|+++..
T Consensus 35 ~e~eQEieRL~~LL 48 (58)
T 3a2a_A 35 SEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35666777666543
No 190
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.04 E-value=3.6e+02 Score=23.51 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 018028 211 EIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 211 EIera~rrn~ELEErlrql~~E~ 233 (362)
+|+.+......|+.+++++..|-
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 191
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.93 E-value=4.3e+02 Score=27.11 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=37.8
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 156 IIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 156 l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql 229 (362)
+..+-+.|..+.|..+..-.+.||.-+...+ ..|...+ .+||....-|+..+.+...||.-+..-
T Consensus 94 ~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK--------~kVd~qi-~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 94 ILKPGLEGAQQLDENYGHVSTELRRRIVTLK--------QRVATQV-NRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666555444443 4555555 566666666666666666666655443
No 192
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.62 E-value=2.1e+02 Score=20.74 Aligned_cols=28 Identities=18% Similarity=-0.004 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhH
Q 018028 218 LNWVLQERVKSLFVENQIWRDLAQTNEA 245 (362)
Q Consensus 218 rn~ELEErlrql~~E~QaWq~~A~~nEA 245 (362)
...+|++++..|..++...+.....-..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999998888776544333
No 193
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=23.48 E-value=2.4e+02 Score=21.31 Aligned_cols=33 Identities=12% Similarity=-0.084 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018028 207 EKDEEIHRMRKLNWVLQERVKSLFVENQIWRDL 239 (362)
Q Consensus 207 eKEeEIera~rrn~ELEErlrql~~E~QaWq~~ 239 (362)
..--+.+.+..+..++.++|..|......++..
T Consensus 72 ~~h~~~~~I~~r~~~l~~~w~~L~~~~~~Rr~~ 104 (107)
T 2spc_A 72 QNHYASNLVDEKRKQVLERWRHLKEGLIEKRSR 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566778888889999999998887777654
No 194
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.28 E-value=4.2e+02 Score=26.02 Aligned_cols=40 Identities=28% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Q 018028 210 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHVGG 263 (362)
Q Consensus 210 eEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~LeQ~l~q~~~ 263 (362)
++.+.+..+..+|.++++.+ |+....+..+|+..+.....
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ipN 103 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRL--------------EEALREKEARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTTCCC
T ss_pred ccHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhCCC
Confidence 45555555555666665554 33334456677777776655
No 195
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.28 E-value=4.2e+02 Score=23.94 Aligned_cols=24 Identities=4% Similarity=0.183 Sum_probs=11.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHH
Q 018028 205 LKEKDEEIHRMRKLNWVLQERVKS 228 (362)
Q Consensus 205 LReKEeEIera~rrn~ELEErlrq 228 (362)
++.++.+|+....+....++++..
T Consensus 62 ~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 62 VSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555555555555544444433
No 196
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=23.22 E-value=30 Score=25.19 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=4.9
Q ss_pred cccccccccc
Q 018028 311 RMLCRRCGEK 320 (362)
Q Consensus 311 ~~~C~iC~~~ 320 (362)
.+.|.+|...
T Consensus 36 dw~CP~Cg~~ 45 (54)
T 4rxn_A 36 DWVCPLCGVG 45 (54)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCcCCCCc
Confidence 3455555543
No 197
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.16 E-value=35 Score=24.48 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=6.5
Q ss_pred cCccccccccceE
Q 018028 345 SCPVCNFVVDASL 357 (362)
Q Consensus 345 ~CPvCR~~i~~~V 357 (362)
.||+|...+..+.
T Consensus 37 ~CP~Cg~~K~~F~ 49 (52)
T 1yk4_A 37 VCPLCGAPKSEFE 49 (52)
T ss_dssp BCTTTCCBGGGEE
T ss_pred cCCCCCCCHHHcE
Confidence 4555555554444
No 198
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=23.06 E-value=98 Score=29.89 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=19.3
Q ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018028 199 EGVANKLKEKDEEIHRMRKLNWVLQERVKSL 229 (362)
Q Consensus 199 ~~~~~rLReKEeEIera~rrn~ELEErlrql 229 (362)
..+.+.||..+.+++.++.|...||..+.++
T Consensus 24 ~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q 54 (323)
T 1lwu_B 24 STVAGSLRSMKSVLEHLRAKMQRMEEAIKTQ 54 (323)
T ss_dssp TTTHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555556777777777777776554
No 199
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=22.43 E-value=40 Score=27.34 Aligned_cols=44 Identities=23% Similarity=0.609 Sum_probs=29.3
Q ss_pred cccccccccc----ccceEEeCCCCc--ccCccccccc----CCcCcccccccc
Q 018028 311 RMLCRRCGEK----ESSVLLLPCRHL--CLCTVCGSCL----IGSCPVCNFVVD 354 (362)
Q Consensus 311 ~~~C~iC~~~----~a~vlLlPCrHl--clC~~C~~~l----~~~CPvCR~~i~ 354 (362)
...|.||.+. .-.=+|+-|..- .+|+.|...- ...||.|.+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3579999885 222256666543 4678885442 689999998765
No 200
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=21.96 E-value=3e+02 Score=21.85 Aligned_cols=70 Identities=11% Similarity=0.165 Sum_probs=41.3
Q ss_pred cchHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 018028 151 LLDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKS 228 (362)
Q Consensus 151 ~l~~~l~~~l~qQ~~EID~~i~~q~ErLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrq 228 (362)
.++.++.++|++.-.+=--+| ..|+..|+|++..-+-++++--+ +.||+...++....++.+-|-+.-|+
T Consensus 18 V~P~G~~~~lrq~I~DKQ~~i----~~Lt~eLq~A~~eaNpaeIA~~~----~~L~qAraDL~~l~r~~av~g~E~RR 87 (90)
T 4b6x_A 18 VCPRGAGAALRQEIEDKQLMV----NNLTDELQDAIDEANPAEIANTS----QQLRHARADLADLQRRFAVLRNEDRR 87 (90)
T ss_dssp ----CTTHHHHHHHHHHHHHH----HHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccHHHHHHHHHHHHHH----HHHHHHHHHHHHccCHHHHHhHH----HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 445556666655443333333 35777888888777777766555 56777777777777766666554433
No 201
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.27 E-value=3.9e+02 Score=24.11 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 018028 184 EQRKRQSRMLISAIQE---GVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNL 254 (362)
Q Consensus 184 E~RqRh~r~Ll~avE~---~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaWq~~A~~nEA~A~~Lra~L 254 (362)
+.|.+..-.||..+.. .....|..|+.||+.+.++.+.++++.+ .++.-...+.++-...-.|-..|
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~----~~~~~~~~~~e~i~i~~DL~e~L 81 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK----ELKTQTSQQAENSEVIKDLYEYL 81 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhhHHHHHHHhhhHHHHHHHHc
No 202
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=21.14 E-value=35 Score=24.79 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=7.4
Q ss_pred cCccccccccceEE
Q 018028 345 SCPVCNFVVDASLH 358 (362)
Q Consensus 345 ~CPvCR~~i~~~V~ 358 (362)
.||+|...+..+..
T Consensus 38 ~CP~Cga~K~~F~~ 51 (55)
T 2v3b_B 38 VCPDCGVGKIDFEM 51 (55)
T ss_dssp CCTTTCCCGGGEEE
T ss_pred cCCCCCCCHHHcee
Confidence 45555555555443
No 203
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.98 E-value=1.5e+02 Score=23.01 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 018028 215 MRKLNWVLQERVKSLFVENQIWRDLAQT 242 (362)
Q Consensus 215 a~rrn~ELEErlrql~~E~QaWq~~A~~ 242 (362)
.+.+..+++.++..|..||..-+.....
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~ 61 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQ 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888888888877665443
No 204
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.63 E-value=1.3e+02 Score=28.70 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=28.2
Q ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018028 199 EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 236 (362)
Q Consensus 199 ~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~QaW 236 (362)
.+..++...++.||+.+...+.+|++.+.++..+.+.=
T Consensus 174 ~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 174 SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455667899999999999999999997665433
No 205
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.24 E-value=6e+02 Score=25.36 Aligned_cols=51 Identities=22% Similarity=0.080 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018028 177 KVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 233 (362)
Q Consensus 177 rLR~~LeE~RqRh~r~Ll~avE~~~~~rLReKEeEIera~rrn~ELEErlrql~~E~ 233 (362)
+=+..|+|+.+- ..++...+.. +++.+..++....+..+|++.+.++...+
T Consensus 85 ~Skkml~~~~~~--~~~~~~~~~~----i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 85 KSRKMLEEIMKY--EASILTHDSS----IRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH--HHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456655433 4555555533 45555567777777788888777776543
Done!