Query 018029
Match_columns 362
No_of_seqs 353 out of 1810
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 2.3E-21 4.9E-26 160.7 14.7 111 14-125 2-121 (121)
2 cd08376 C2B_MCTP_PRT C2 domain 99.8 3.5E-20 7.6E-25 152.3 15.2 111 15-125 1-114 (116)
3 cd08682 C2_Rab11-FIP_classI C2 99.8 5.6E-20 1.2E-24 153.5 13.5 99 16-114 1-109 (126)
4 KOG1030 Predicted Ca2+-depende 99.8 3.7E-20 8E-25 157.9 10.8 111 13-123 5-116 (168)
5 cd04042 C2A_MCTP_PRT C2 domain 99.8 3.1E-19 6.6E-24 147.9 15.1 111 16-126 2-120 (121)
6 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.9E-19 4.1E-24 150.2 13.6 99 16-114 2-111 (126)
7 cd04024 C2A_Synaptotagmin-like 99.8 3.7E-19 8E-24 148.5 13.9 112 14-125 1-128 (128)
8 cd08681 C2_fungal_Inn1p-like C 99.8 3E-19 6.5E-24 147.1 12.8 110 14-124 1-117 (118)
9 cd08377 C2C_MCTP_PRT C2 domain 99.8 9.1E-19 2E-23 144.3 15.2 111 14-124 1-117 (119)
10 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.4E-19 9.4E-24 148.3 12.9 111 15-125 1-125 (127)
11 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 7.9E-19 1.7E-23 145.7 14.0 109 16-124 2-120 (121)
12 cd04036 C2_cPLA2 C2 domain pre 99.8 9.3E-19 2E-23 144.6 13.5 111 15-126 1-118 (119)
13 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.4E-18 3.1E-23 143.4 14.2 111 14-125 1-121 (121)
14 cd08678 C2_C21orf25-like C2 do 99.8 1.5E-18 3.2E-23 144.9 14.2 110 16-127 1-121 (126)
15 cd08375 C2_Intersectin C2 doma 99.8 3E-18 6.5E-23 145.1 15.7 115 11-125 12-135 (136)
16 cd04019 C2C_MCTP_PRT_plant C2 99.8 2E-18 4.3E-23 148.6 14.7 112 15-126 1-132 (150)
17 cd04046 C2_Calpain C2 domain p 99.8 4.7E-18 1E-22 142.0 16.0 113 13-126 2-122 (126)
18 cd08677 C2A_Synaptotagmin-13 C 99.8 1E-18 2.2E-23 143.3 10.8 100 10-112 10-118 (118)
19 cd04027 C2B_Munc13 C2 domain s 99.8 3E-18 6.4E-23 143.4 13.8 110 15-124 2-124 (127)
20 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 3E-18 6.5E-23 142.2 13.7 109 16-124 2-120 (121)
21 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 4.8E-18 1.1E-22 141.1 14.6 100 15-114 1-103 (123)
22 cd08381 C2B_PI3K_class_II C2 d 99.8 2.6E-18 5.6E-23 142.8 12.4 99 13-112 12-121 (122)
23 cd08395 C2C_Munc13 C2 domain t 99.8 4E-18 8.7E-23 141.0 12.2 99 15-114 1-112 (120)
24 cd04015 C2_plant_PLD C2 domain 99.8 1.5E-17 3.2E-22 144.4 15.5 112 13-125 6-157 (158)
25 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 7.3E-18 1.6E-22 141.8 12.7 110 15-124 1-131 (133)
26 cd04043 C2_Munc13_fungal C2 do 99.8 2.2E-17 4.8E-22 137.5 15.2 113 14-127 1-122 (126)
27 cd08378 C2B_MCTP_PRT_plant C2 99.8 1E-17 2.3E-22 139.0 12.9 104 16-124 2-118 (121)
28 cd04028 C2B_RIM1alpha C2 domai 99.8 1.2E-17 2.5E-22 142.7 13.1 103 13-115 28-139 (146)
29 cd08393 C2A_SLP-1_2 C2 domain 99.8 6.8E-18 1.5E-22 140.9 11.1 103 11-113 12-125 (125)
30 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.4E-17 2.9E-22 138.6 12.6 103 11-113 13-123 (124)
31 cd04014 C2_PKC_epsilon C2 doma 99.7 3.9E-17 8.5E-22 137.4 15.4 113 13-127 3-130 (132)
32 cd08394 C2A_Munc13 C2 domain f 99.7 2E-17 4.4E-22 137.0 13.3 105 13-122 1-113 (127)
33 cd04031 C2A_RIM1alpha C2 domai 99.7 1.5E-17 3.3E-22 138.2 12.4 103 11-113 13-125 (125)
34 cd08400 C2_Ras_p21A1 C2 domain 99.7 5.6E-17 1.2E-21 135.5 15.8 111 13-127 3-124 (126)
35 cd04017 C2D_Ferlin C2 domain f 99.7 4.1E-17 8.9E-22 137.9 15.1 114 14-127 1-133 (135)
36 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.7E-17 3.7E-22 138.5 12.4 103 11-113 12-125 (125)
37 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.4E-17 5.1E-22 137.1 13.1 103 11-113 13-123 (124)
38 cd04050 C2B_Synaptotagmin-like 99.7 2.1E-17 4.6E-22 133.5 12.3 98 15-115 1-103 (105)
39 cd08688 C2_KIAA0528-like C2 do 99.7 1.4E-17 3E-22 135.8 10.6 98 16-113 1-108 (110)
40 cd04041 C2A_fungal C2 domain f 99.7 1.5E-17 3.3E-22 135.7 10.1 99 14-113 1-107 (111)
41 cd04010 C2B_RasA3 C2 domain se 99.7 3E-17 6.5E-22 140.8 12.3 99 15-115 1-123 (148)
42 cd08680 C2_Kibra C2 domain fou 99.7 3.2E-17 6.8E-22 136.6 11.4 103 10-112 10-124 (124)
43 cd04045 C2C_Tricalbin-like C2 99.7 8E-17 1.7E-21 133.5 13.7 101 14-114 1-103 (120)
44 cd04039 C2_PSD C2 domain prese 99.7 4E-17 8.7E-22 132.8 11.6 89 14-102 1-95 (108)
45 cd08382 C2_Smurf-like C2 domai 99.7 1E-16 2.2E-21 133.3 14.4 98 16-114 2-105 (123)
46 cd08392 C2A_SLP-3 C2 domain fi 99.7 3.6E-17 7.7E-22 137.1 11.6 103 11-113 12-128 (128)
47 cd04044 C2A_Tricalbin-like C2 99.7 6.9E-17 1.5E-21 133.8 12.9 113 14-126 2-123 (124)
48 cd08685 C2_RGS-like C2 domain 99.7 4.5E-17 9.8E-22 134.8 11.2 100 12-112 10-119 (119)
49 cd08386 C2A_Synaptotagmin-7 C2 99.7 9.2E-17 2E-21 133.6 13.0 104 11-114 13-125 (125)
50 cd08388 C2A_Synaptotagmin-4-11 99.7 9.3E-17 2E-21 134.6 12.8 104 11-114 13-128 (128)
51 KOG1032 Uncharacterized conser 99.7 5.5E-18 1.2E-22 173.4 6.4 105 164-284 108-215 (590)
52 cd04049 C2_putative_Elicitor-r 99.7 9.2E-17 2E-21 133.5 12.5 102 14-115 1-109 (124)
53 cd04030 C2C_KIAA1228 C2 domain 99.7 8.6E-17 1.9E-21 134.1 12.2 103 11-113 13-127 (127)
54 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2E-17 4.4E-22 139.2 8.1 109 10-118 9-125 (133)
55 cd08521 C2A_SLP C2 domain firs 99.7 1.3E-16 2.8E-21 132.2 12.7 102 11-112 11-123 (123)
56 cd04038 C2_ArfGAP C2 domain pr 99.7 2.3E-16 4.9E-21 134.9 13.9 88 14-102 2-89 (145)
57 cd08390 C2A_Synaptotagmin-15-1 99.7 1.6E-16 3.4E-21 131.8 12.6 104 11-114 11-123 (123)
58 cd04051 C2_SRC2_like C2 domain 99.7 1.1E-16 2.4E-21 133.2 11.5 110 15-124 1-124 (125)
59 cd08373 C2A_Ferlin C2 domain f 99.7 3.5E-16 7.6E-21 130.6 14.3 107 20-128 2-118 (127)
60 cd08676 C2A_Munc13-like C2 dom 99.7 1.4E-16 3.1E-21 137.2 12.1 101 8-112 22-153 (153)
61 cd08389 C2A_Synaptotagmin-14_1 99.7 1.9E-16 4E-21 132.0 12.0 104 10-114 12-124 (124)
62 cd08404 C2B_Synaptotagmin-4 C2 99.7 9.4E-17 2E-21 135.8 9.9 109 11-119 12-128 (136)
63 cd04011 C2B_Ferlin C2 domain s 99.7 2.8E-16 6E-21 128.2 11.9 99 12-114 2-110 (111)
64 cd08406 C2B_Synaptotagmin-12 C 99.7 6.8E-17 1.5E-21 136.8 8.4 109 10-118 11-127 (136)
65 cd04032 C2_Perforin C2 domain 99.7 3.7E-16 8E-21 130.6 12.6 92 11-103 25-118 (127)
66 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.7E-16 5.8E-21 137.1 12.0 104 11-114 24-138 (162)
67 cd04018 C2C_Ferlin C2 domain t 99.7 3.2E-16 7E-21 134.7 12.3 98 16-113 2-124 (151)
68 cd04040 C2D_Tricalbin-like C2 99.7 4.6E-16 1E-20 127.4 12.5 103 16-118 1-107 (115)
69 cd08402 C2B_Synaptotagmin-1 C2 99.7 9.9E-17 2.2E-21 135.6 8.2 110 9-118 10-127 (136)
70 PF02893 GRAM: GRAM domain; I 99.7 8E-17 1.7E-21 120.3 6.6 66 164-229 2-69 (69)
71 KOG0696 Serine/threonine prote 99.7 2.9E-17 6.3E-22 157.3 4.1 102 13-114 179-288 (683)
72 cd08675 C2B_RasGAP C2 domain s 99.7 5.5E-16 1.2E-20 131.4 11.3 99 16-115 1-121 (137)
73 cd08407 C2B_Synaptotagmin-13 C 99.7 1.7E-16 3.6E-21 134.5 7.9 105 10-114 11-125 (138)
74 cd08405 C2B_Synaptotagmin-7 C2 99.7 3E-16 6.4E-21 132.7 8.3 108 11-118 12-127 (136)
75 cd08383 C2A_RasGAP C2 domain ( 99.7 2.6E-15 5.7E-20 123.1 13.6 105 16-124 2-116 (117)
76 cd08403 C2B_Synaptotagmin-3-5- 99.7 5.3E-16 1.1E-20 130.8 9.6 109 10-118 10-126 (134)
77 cd08410 C2B_Synaptotagmin-17 C 99.6 6.3E-16 1.4E-20 130.7 9.7 109 11-119 11-128 (135)
78 cd04009 C2B_Munc13-like C2 dom 99.6 1.3E-15 2.8E-20 128.4 11.3 92 12-103 14-117 (133)
79 cd04048 C2A_Copine C2 domain f 99.6 1.5E-15 3.2E-20 125.7 11.3 96 19-114 5-114 (120)
80 cd04026 C2_PKC_alpha_gamma C2 99.6 1.5E-15 3.3E-20 127.4 11.5 105 14-118 13-126 (131)
81 cd08691 C2_NEDL1-like C2 domai 99.6 5.2E-15 1.1E-19 125.3 14.0 99 15-115 2-122 (137)
82 cd04037 C2E_Ferlin C2 domain f 99.6 2.9E-15 6.3E-20 124.8 11.6 89 15-103 1-92 (124)
83 cd08692 C2B_Tac2-N C2 domain s 99.6 1.5E-15 3.3E-20 127.5 9.8 106 9-114 9-123 (135)
84 cd08690 C2_Freud-1 C2 domain f 99.6 1.3E-14 2.9E-19 125.0 15.5 113 17-129 5-140 (155)
85 cd00276 C2B_Synaptotagmin C2 d 99.6 9.9E-16 2.1E-20 128.6 8.4 108 11-118 11-126 (134)
86 cd08408 C2B_Synaptotagmin-14_1 99.6 1.4E-15 3.1E-20 129.1 9.2 111 9-119 10-130 (138)
87 cd04021 C2_E3_ubiquitin_ligase 99.6 1.3E-14 2.9E-19 121.0 13.5 98 14-113 2-107 (125)
88 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.3E-14 2.9E-19 120.4 12.5 101 11-112 12-121 (123)
89 cd04013 C2_SynGAP_like C2 doma 99.6 2.5E-14 5.4E-19 122.0 14.3 99 11-114 8-113 (146)
90 cd04047 C2B_Copine C2 domain s 99.6 1E-14 2.2E-19 118.6 10.2 94 18-112 4-108 (110)
91 KOG1011 Neurotransmitter relea 99.6 4.7E-15 1E-19 147.4 8.6 114 13-126 294-424 (1283)
92 cd04052 C2B_Tricalbin-like C2 99.6 2.6E-14 5.6E-19 116.7 11.5 96 31-127 9-110 (111)
93 cd08409 C2B_Synaptotagmin-15 C 99.6 6.9E-15 1.5E-19 124.7 8.4 104 11-115 12-125 (137)
94 cd00275 C2_PLC_like C2 domain 99.6 9E-14 1.9E-18 115.7 14.6 102 14-117 2-113 (128)
95 smart00568 GRAM domain in gluc 99.6 4.5E-15 9.9E-20 108.0 5.6 60 170-229 1-61 (61)
96 cd08686 C2_ABR C2 domain in th 99.6 4.2E-14 9.2E-19 115.8 11.3 80 16-101 1-92 (118)
97 KOG1028 Ca2+-dependent phospho 99.6 9.3E-14 2E-18 138.2 16.0 162 12-184 165-341 (421)
98 PLN03008 Phospholipase D delta 99.5 4.7E-14 1E-18 146.7 13.9 118 13-131 13-182 (868)
99 PLN03200 cellulose synthase-in 99.5 3.5E-14 7.5E-19 159.7 11.6 111 13-126 1979-2100(2102)
100 PF00168 C2: C2 domain; Inter 99.4 1.1E-12 2.4E-17 100.2 10.3 81 16-96 1-85 (85)
101 KOG2059 Ras GTPase-activating 99.3 3.9E-12 8.5E-17 128.3 9.1 115 14-129 5-128 (800)
102 cd00030 C2 C2 domain. The C2 d 99.3 2.3E-11 4.9E-16 94.5 10.9 97 16-112 1-102 (102)
103 smart00239 C2 Protein kinase C 99.3 6.7E-11 1.4E-15 92.4 11.0 88 16-103 2-93 (101)
104 cd08374 C2F_Ferlin C2 domain s 99.2 2.4E-10 5.2E-15 96.0 10.3 87 16-102 2-121 (133)
105 KOG1028 Ca2+-dependent phospho 99.1 1.2E-10 2.6E-15 116.1 9.0 102 11-112 295-404 (421)
106 PLN02223 phosphoinositide phos 99.1 3.7E-10 8.1E-15 113.5 12.4 105 13-118 408-523 (537)
107 KOG1328 Synaptic vesicle prote 99.1 2.4E-11 5.3E-16 122.7 1.0 120 10-129 110-304 (1103)
108 PLN02952 phosphoinositide phos 99.1 1.4E-09 3E-14 111.5 12.8 105 13-118 469-585 (599)
109 PLN02270 phospholipase D alpha 99.0 3.3E-09 7.1E-14 110.9 13.7 116 13-129 7-151 (808)
110 COG5038 Ca2+-dependent lipid-b 99.0 9.6E-10 2.1E-14 116.9 9.7 104 12-115 1038-1145(1227)
111 PLN02230 phosphoinositide phos 99.0 3.2E-09 6.9E-14 108.7 11.4 105 13-118 468-584 (598)
112 KOG1328 Synaptic vesicle prote 99.0 1.9E-10 4.2E-15 116.3 2.1 92 11-102 944-1047(1103)
113 COG5038 Ca2+-dependent lipid-b 98.9 5.5E-09 1.2E-13 111.2 11.8 120 9-128 431-559 (1227)
114 KOG0169 Phosphoinositide-speci 98.9 4.8E-09 1.1E-13 107.7 9.6 105 15-120 617-732 (746)
115 PLN02222 phosphoinositide phos 98.9 1.3E-08 2.8E-13 104.1 12.4 105 13-118 451-567 (581)
116 KOG1032 Uncharacterized conser 98.9 4.9E-10 1.1E-14 115.3 2.0 301 3-307 86-397 (590)
117 cd08689 C2_fungal_Pkc1p C2 dom 98.9 8.1E-09 1.8E-13 82.3 8.1 82 16-102 1-86 (109)
118 PLN02228 Phosphoinositide phos 98.9 2.8E-08 6.1E-13 101.4 13.9 105 13-118 430-547 (567)
119 KOG1031 Predicted Ca2+-depende 98.7 7E-08 1.5E-12 96.1 9.2 114 13-126 2-136 (1169)
120 KOG1326 Membrane-associated pr 98.6 3.9E-08 8.5E-13 103.1 3.8 97 5-101 603-703 (1105)
121 KOG1264 Phospholipase C [Lipid 98.5 4.7E-07 1E-11 93.2 10.0 99 13-113 1064-1170(1267)
122 KOG2059 Ras GTPase-activating 98.4 6.3E-07 1.4E-11 91.3 8.9 108 21-129 138-279 (800)
123 KOG4347 GTPase-activating prot 98.4 2.6E-07 5.7E-12 93.5 5.4 106 158-282 6-115 (671)
124 KOG1327 Copine [Signal transdu 98.4 1E-06 2.2E-11 88.4 8.2 174 27-211 3-220 (529)
125 PLN02352 phospholipase D epsil 98.3 5E-06 1.1E-10 87.2 12.3 109 13-129 9-133 (758)
126 KOG1013 Synaptic vesicle prote 98.1 4.7E-06 1E-10 78.5 5.0 100 12-111 231-338 (362)
127 KOG0905 Phosphoinositide 3-kin 98.0 6.1E-06 1.3E-10 88.2 4.7 102 13-114 1523-1635(1639)
128 KOG1011 Neurotransmitter relea 97.8 8.5E-05 1.8E-09 75.4 8.5 100 14-114 1125-1237(1283)
129 KOG1327 Copine [Signal transdu 97.7 6.3E-05 1.4E-09 75.8 5.5 82 21-103 143-235 (529)
130 cd08683 C2_C2cd3 C2 domain fou 97.6 0.0001 2.3E-09 60.8 5.5 97 16-112 1-143 (143)
131 PLN02964 phosphatidylserine de 97.5 0.00025 5.4E-09 74.0 7.1 83 13-102 53-137 (644)
132 KOG2060 Rab3 effector RIM1 and 97.3 0.00015 3.3E-09 69.6 3.2 104 11-114 266-379 (405)
133 KOG1326 Membrane-associated pr 97.3 4.9E-05 1.1E-09 80.5 -0.1 101 13-113 205-316 (1105)
134 KOG1013 Synaptic vesicle prote 97.2 6.6E-05 1.4E-09 70.9 -0.4 93 13-105 92-193 (362)
135 PF14470 bPH_3: Bacterial PH d 97.2 0.0062 1.3E-07 47.6 10.6 89 171-277 1-91 (96)
136 cd08684 C2A_Tac2-N C2 domain f 97.1 0.00059 1.3E-08 52.7 4.2 92 18-111 3-102 (103)
137 PF14844 PH_BEACH: PH domain a 96.8 0.0014 3E-08 52.8 3.5 87 178-277 3-105 (106)
138 cd08693 C2_PI3K_class_I_beta_d 95.9 0.077 1.7E-06 46.7 9.9 101 14-124 8-134 (173)
139 cd08398 C2_PI3K_class_I_alpha 95.7 0.11 2.3E-06 45.1 10.0 100 14-125 8-121 (158)
140 cd08687 C2_PKN-like C2 domain 95.5 0.19 4.1E-06 39.2 9.4 85 33-125 7-92 (98)
141 cd08397 C2_PI3K_class_III C2 d 95.4 0.085 1.8E-06 45.8 8.1 85 32-124 27-121 (159)
142 KOG3837 Uncharacterized conser 95.4 0.019 4.2E-07 56.0 4.4 114 14-127 367-504 (523)
143 KOG1265 Phospholipase C [Lipid 95.3 0.045 9.7E-07 58.1 7.2 98 12-118 701-809 (1189)
144 cd08380 C2_PI3K_like C2 domain 95.3 0.14 3.1E-06 43.9 9.2 88 14-102 8-107 (156)
145 PF12416 DUF3668: Cep120 prote 95.2 0.35 7.5E-06 47.1 12.5 97 16-115 2-114 (340)
146 KOG1452 Predicted Rho GTPase-a 94.9 0.08 1.7E-06 50.1 6.7 114 11-126 48-167 (442)
147 PF15627 CEP76-C2: CEP76 C2 do 94.8 0.52 1.1E-05 40.6 11.0 92 11-102 6-115 (156)
148 cd04012 C2A_PI3K_class_II C2 d 94.5 0.2 4.3E-06 43.9 8.1 90 13-102 7-119 (171)
149 PF00792 PI3K_C2: Phosphoinosi 93.2 1 2.2E-05 38.1 9.9 55 49-103 23-86 (142)
150 cd08399 C2_PI3K_class_I_gamma 93.0 1 2.2E-05 39.7 9.9 104 15-127 11-139 (178)
151 PF10358 NT-C2: N-terminal C2 91.8 6.7 0.00015 32.7 13.4 113 11-127 4-136 (143)
152 PF07289 DUF1448: Protein of u 90.5 1.8 4E-05 41.8 9.2 100 170-285 150-255 (339)
153 smart00142 PI3K_C2 Phosphoinos 90.2 2 4.4E-05 34.0 8.0 70 16-85 13-92 (100)
154 PF11605 Vps36_ESCRT-II: Vacuo 89.4 1.2 2.6E-05 34.8 5.8 49 192-241 37-85 (89)
155 PF06115 DUF956: Domain of unk 88.6 1.4 3E-05 35.9 5.8 66 188-269 20-87 (118)
156 PF08567 TFIIH_BTF_p62_N: TFII 88.5 2.9 6.3E-05 31.8 7.3 61 193-265 14-78 (79)
157 cd01201 Neurobeachin Neurobeac 88.4 0.62 1.4E-05 37.5 3.7 87 176-278 2-103 (108)
158 PF14429 DOCK-C2: C2 domain in 87.7 3.1 6.6E-05 36.7 8.2 54 48-101 61-120 (184)
159 PF11696 DUF3292: Protein of u 85.0 2.1 4.6E-05 44.7 6.4 82 180-279 520-633 (642)
160 PF15625 CC2D2AN-C2: CC2D2A N- 84.7 11 0.00023 32.9 9.8 68 34-102 36-106 (168)
161 cd08695 C2_Dock-B C2 domains f 81.2 15 0.00032 32.8 9.4 55 47-101 54-113 (189)
162 cd08694 C2_Dock-A C2 domains f 81.1 17 0.00037 32.6 9.7 55 47-101 54-115 (196)
163 KOG4471 Phosphatidylinositol 3 78.6 8 0.00017 40.1 7.6 99 165-278 30-133 (717)
164 COG4687 Uncharacterized protei 78.0 4.7 0.0001 32.5 4.7 63 191-269 23-86 (122)
165 cd08679 C2_DOCK180_related C2 76.4 8.5 0.00018 33.8 6.5 53 49-101 55-115 (178)
166 cd08696 C2_Dock-C C2 domains f 76.0 11 0.00023 33.4 6.9 55 47-101 55-118 (179)
167 KOG0694 Serine/threonine prote 71.1 1.3 2.8E-05 46.4 -0.0 92 33-126 26-121 (694)
168 PF07289 DUF1448: Protein of u 69.1 39 0.00084 32.9 9.4 82 192-286 42-130 (339)
169 smart00683 DM16 Repeats in sea 69.0 13 0.00027 26.3 4.6 34 193-227 21-54 (55)
170 cd08697 C2_Dock-D C2 domains f 68.3 21 0.00045 31.8 6.9 55 47-101 57-123 (185)
171 KOG4269 Rac GTPase-activating 64.2 3.7 8.1E-05 44.3 1.6 72 7-84 752-828 (1112)
172 PF11618 DUF3250: Protein of u 61.5 36 0.00078 27.4 6.6 84 38-123 2-98 (107)
173 PF06713 bPH_4: Bacterial PH d 57.0 77 0.0017 23.4 7.4 62 198-279 6-72 (74)
174 PTZ00447 apical membrane antig 51.0 2.5E+02 0.0055 27.6 14.4 98 15-119 59-162 (508)
175 KOG1329 Phospholipase D1 [Lipi 49.9 16 0.00035 39.7 3.4 79 35-113 138-220 (887)
176 cd04009 C2B_Munc13-like C2 dom 48.1 34 0.00073 28.1 4.6 76 157-232 32-126 (133)
177 cd08385 C2A_Synaptotagmin-1-5- 44.1 49 0.0011 26.5 4.9 68 156-223 31-111 (124)
178 PF12068 DUF3548: Domain of un 41.8 38 0.00083 30.8 4.2 33 212-244 111-143 (213)
179 PF08512 Rtt106: Histone chape 39.7 1.8E+02 0.0039 22.6 8.3 72 192-282 12-86 (95)
180 PF02392 Ycf4: Ycf4; InterPro 36.9 77 0.0017 28.0 5.1 51 199-253 96-151 (180)
181 PF04386 SspB: Stringent starv 34.7 72 0.0016 27.4 4.6 37 193-229 67-103 (155)
182 cd04020 C2B_SLP_1-2-3-4 C2 dom 34.3 99 0.0021 26.5 5.5 40 151-190 37-84 (162)
183 KOG3543 Ca2+-dependent activat 31.2 3.3E+02 0.0072 28.9 9.2 95 16-113 343-440 (1218)
184 PF04283 CheF-arch: Chemotaxis 30.5 61 0.0013 29.6 3.7 33 192-228 27-59 (221)
185 KOG0904 Phosphatidylinositol 3 28.7 2E+02 0.0043 31.8 7.4 67 14-83 343-421 (1076)
186 PF03703 bPH_2: Bacterial PH d 28.5 2.2E+02 0.0049 20.3 7.7 49 195-244 6-58 (80)
187 KOG2419 Phosphatidylserine dec 26.7 15 0.00032 38.5 -1.1 76 14-90 280-361 (975)
188 KOG0906 Phosphatidylinositol 3 26.2 63 0.0014 34.2 3.2 53 49-101 67-123 (843)
189 PRK11798 ClpXP protease specif 25.8 55 0.0012 27.6 2.3 37 193-229 59-95 (138)
190 TIGR02888 spore_YlmC_YmxH spor 24.7 44 0.00096 25.1 1.4 17 209-225 51-67 (76)
191 PF07162 B9-C2: Ciliary basal 23.8 4.7E+02 0.01 22.5 11.8 79 16-100 4-102 (168)
192 KOG3294 WW domain binding prot 22.7 2.5E+02 0.0055 26.0 6.1 82 192-284 48-132 (261)
193 PF13082 DUF3931: Protein of u 22.3 98 0.0021 21.5 2.6 13 259-271 32-44 (66)
194 CHL00036 ycf4 photosystem I as 21.5 1.7E+02 0.0036 26.0 4.5 44 199-242 99-145 (184)
195 PF01060 DUF290: Transthyretin 21.2 1.2E+02 0.0026 22.7 3.2 26 73-98 11-36 (80)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=2.3e-21 Score=160.71 Aligned_cols=111 Identities=19% Similarity=0.280 Sum_probs=98.2
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccC-CCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~-t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI 92 (362)
|+|.|+|++|++|+..+ .|++||||++.+++++++|+++.+ +.||.|||+|.|.+.+....|.|+|||+|..++|++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 78999999999998887 799999999999999999999876 7999999999999986667899999999999999999
Q ss_pred EEEEEEecc-C--CCcceEEEEccC-----CCCeeEEEEEE
Q 018029 93 GSVIVTVES-E--GQTGAVWYTLDS-----PSGQVCLHIKT 125 (362)
Q Consensus 93 G~~~i~L~~-l--~~~~~~w~~L~~-----~~G~i~l~l~~ 125 (362)
|.+.+++.. + +...+.|++|.+ +.|+|++.+.+
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999964 4 455789999975 34888887763
No 2
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.85 E-value=3.5e-20 Score=152.26 Aligned_cols=111 Identities=24% Similarity=0.363 Sum_probs=101.7
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfIG 93 (362)
+++|+|++|++|+.++..+.+||||++.+++.+.+|+++.+++||.|+|.|.|.+.+. .+.|.++|||++..+++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999999999999999999999899999999999999999999998765 678999999999988999999
Q ss_pred EEEEEeccC--CCcceEEEEccCCCCeeEEEEEE
Q 018029 94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKT 125 (362)
Q Consensus 94 ~~~i~L~~l--~~~~~~w~~L~~~~G~i~l~l~~ 125 (362)
++.++|.++ +...+.|++|.+..|++++.+++
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEe
Confidence 999999987 56678999999878999888765
No 3
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=5.6e-20 Score=153.50 Aligned_cols=99 Identities=25% Similarity=0.494 Sum_probs=90.0
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC------CCcEEEEEEEEcCCCCCC
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS 89 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~------~~~~L~~~V~D~d~~~~d 89 (362)
++|+|++|++|+.++..|.+||||++.++..+.+|+++.+++||.|||.|.|.+.. ....|.++|||++..+++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999999999999999999999999999999999999999999875 356799999999998889
Q ss_pred ceeEEEEEEeccCC----CcceEEEEccC
Q 018029 90 TVLGSVIVTVESEG----QTGAVWYTLDS 114 (362)
Q Consensus 90 dfIG~~~i~L~~l~----~~~~~w~~L~~ 114 (362)
++||++.++|.++. .....|++|.+
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 99999999999863 44679999975
No 4
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.83 E-value=3.7e-20 Score=157.94 Aligned_cols=111 Identities=24% Similarity=0.422 Sum_probs=97.5
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI 92 (362)
-|.|.|.|++|.+|..+|..++|||||++.+++++.+|+++.+++||.|||.|.|.+.++...|+++|||+|.++.|||+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~m 84 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFM 84 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCccccc
Confidence 58999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccCCCcceEEE-EccCCCCeeEEEE
Q 018029 93 GSVIVTVESEGQTGAVWY-TLDSPSGQVCLHI 123 (362)
Q Consensus 93 G~~~i~L~~l~~~~~~w~-~L~~~~G~i~l~l 123 (362)
|.|+|+|..+-.....|+ ......|....++
T Consensus 85 G~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v 116 (168)
T KOG1030|consen 85 GEATIPLKPLLEAQKMDYLKLELLTGTAIGKV 116 (168)
T ss_pred ceeeeccHHHHHHhhhhccccccCCCcEeeEE
Confidence 999999999855555555 2233445544433
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.82 E-value=3.1e-19 Score=147.94 Aligned_cols=111 Identities=23% Similarity=0.469 Sum_probs=98.0
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECC-eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEE
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS 94 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~ 94 (362)
|.|+|++|++|+..|..|.+||||++.++. ...+|+++.++.||.|||.|.|.+.+..+.|.|+|||++..+++++||+
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~ 81 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGS 81 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEE
Confidence 789999999999999999999999999976 5679999999999999999999998767889999999999989999999
Q ss_pred EEEEeccC--CCcceEEEEccCC-----CCeeEEEEEEe
Q 018029 95 VIVTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTI 126 (362)
Q Consensus 95 ~~i~L~~l--~~~~~~w~~L~~~-----~G~i~l~l~~~ 126 (362)
+.+++.++ +...+.|++|.++ .|++++.+++.
T Consensus 82 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 82 AFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 99999997 4667889999742 36777766653
No 6
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.9e-19 Score=150.23 Aligned_cols=99 Identities=21% Similarity=0.362 Sum_probs=90.7
Q ss_pred EEEEEEeeec---CCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC-----
Q 018029 16 IKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW----- 87 (362)
Q Consensus 16 L~V~Vi~A~~---L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~----- 87 (362)
|.|+|++|++ |+.+|..|.+||||++.++.++.||+++.+++||.|||+|.|.+.+....|.|+|||++..+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 7899999999 88999999999999999999999999999999999999999999876778999999998863
Q ss_pred -CCceeEEEEEEeccC--CCcceEEEEccC
Q 018029 88 -KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (362)
Q Consensus 88 -~ddfIG~~~i~L~~l--~~~~~~w~~L~~ 114 (362)
++++||++.++|..+ +.....||+|.+
T Consensus 82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 899999999999998 455678999974
No 7
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.81 E-value=3.7e-19 Score=148.47 Aligned_cols=112 Identities=24% Similarity=0.427 Sum_probs=99.1
Q ss_pred eEEEEEEEeeecCCCCCC--CCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCc
Q 018029 14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST 90 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~--~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~dd 90 (362)
|.|.|+|++|++|+.++. .+.+||||++.++....+|++++++.||.|+|.|.|.+.+ ..+.|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999998 8999999999999899999999999999999999999986 4778999999999988999
Q ss_pred eeEEEEEEeccCC-----CcceEEEEccCC--------CCeeEEEEEE
Q 018029 91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT 125 (362)
Q Consensus 91 fIG~~~i~L~~l~-----~~~~~w~~L~~~--------~G~i~l~l~~ 125 (362)
+||++.+++.++. .....|+.|.++ .|++++++.|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999873 335789999854 5777776654
No 8
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.81 E-value=3e-19 Score=147.14 Aligned_cols=110 Identities=24% Similarity=0.398 Sum_probs=95.3
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeecccc-CCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~-~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~ddf 91 (362)
|.|.|+|++|++|+..+..+.+||||++.++....+|+++. +++||.|||.|.|.+.. ..+.|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 67999999999999999999999999999998888999886 47999999999999985 3578999999999875 899
Q ss_pred eEEEEEEeccC--CCcceEEEEccCC---CCeeEEEEE
Q 018029 92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK 124 (362)
Q Consensus 92 IG~~~i~L~~l--~~~~~~w~~L~~~---~G~i~l~l~ 124 (362)
||++.+++.++ +.....|++|..+ .|+++++++
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~ 117 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence 99999999986 4456899999753 366666654
No 9
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.81 E-value=9.1e-19 Score=144.30 Aligned_cols=111 Identities=23% Similarity=0.465 Sum_probs=98.8
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG 93 (362)
|.|.|+|++|++|+.++..+.+||||++.++....+|+++.++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 57899999999999999999999999999998888999999999999999999999876788999999999888999999
Q ss_pred EEEEEeccCCCcceEEEEccCC------CCeeEEEEE
Q 018029 94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK 124 (362)
Q Consensus 94 ~~~i~L~~l~~~~~~w~~L~~~------~G~i~l~l~ 124 (362)
++.+++.++..+...|+.|..+ .|++.+.+.
T Consensus 81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~ 117 (119)
T cd08377 81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMD 117 (119)
T ss_pred EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEE
Confidence 9999999997667899999742 355555544
No 10
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=4.4e-19 Score=148.32 Aligned_cols=111 Identities=21% Similarity=0.359 Sum_probs=95.4
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC----CcEEEEEEEEcCCCC-CC
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS 89 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~----~~~L~~~V~D~d~~~-~d 89 (362)
.|.|+|++|++|++.+..|.+||||++.++++.++|+++.++.||.|||.|.|.+.+. ...|.|+|||++..+ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3789999999999999999999999999999999999999999999999999998743 357999999999876 79
Q ss_pred ceeEEEEEEeccCC---CcceEEEEccCC------CCeeEEEEEE
Q 018029 90 TVLGSVIVTVESEG---QTGAVWYTLDSP------SGQVCLHIKT 125 (362)
Q Consensus 90 dfIG~~~i~L~~l~---~~~~~w~~L~~~------~G~i~l~l~~ 125 (362)
++||++.+++.++. .....||+|..+ .|++++.+.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 99999999999873 456789999853 4666665543
No 11
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=7.9e-19 Score=145.71 Aligned_cols=109 Identities=27% Similarity=0.440 Sum_probs=94.5
Q ss_pred EEEEEEeeecCCCCC-CCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 018029 16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG 93 (362)
|.|+|++|++|+.++ ..|.+||||.+.++.. ..+|+++.+++||.|||+|.|.+.+....|.|.|||++..+++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 679999999999874 4678999999999765 56999999999999999999999876678999999999999999999
Q ss_pred EEEEEeccC--CCcceEEEEccCC------CCeeEEEEE
Q 018029 94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK 124 (362)
Q Consensus 94 ~~~i~L~~l--~~~~~~w~~L~~~------~G~i~l~l~ 124 (362)
.+.++++++ +...+.|++|.+. .|++++.+.
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999998 4556889999863 477766654
No 12
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.80 E-value=9.3e-19 Score=144.60 Aligned_cols=111 Identities=23% Similarity=0.377 Sum_probs=96.4
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~dd 90 (362)
.|.|+|++|++|+..+..|.+||||++.+. ....+|+++.++.||.|||+|.|.+... ...|.|+|||+|.. +++
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~ 79 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD 79 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence 378999999999999989999999999985 3567999999999999999999998753 45799999999988 899
Q ss_pred eeEEEEEEeccC--CCcceEEEEccC-CCCeeEEEEEEe
Q 018029 91 VLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKTI 126 (362)
Q Consensus 91 fIG~~~i~L~~l--~~~~~~w~~L~~-~~G~i~l~l~~~ 126 (362)
+||++.+++.++ +.....|++|.+ +.|++++++.++
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~ 118 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE 118 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence 999999999997 466789999986 368887777654
No 13
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.80 E-value=1.4e-18 Score=143.38 Aligned_cols=111 Identities=24% Similarity=0.465 Sum_probs=98.1
Q ss_pred eEEEEEEEeeecCCCCCC------CCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCC
Q 018029 14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII 86 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~------~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~ 86 (362)
|.|.|+|++|++|+.++. .|.+||||+++++....+|+++.++.||.|+|.|.|.+.+ ..+.|.++|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998875 3689999999999988999999999999999999999974 467899999999987
Q ss_pred CCCceeEEEEEEeccC--CCcceEEEEccC-CCCeeEEEEEE
Q 018029 87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT 125 (362)
Q Consensus 87 ~~ddfIG~~~i~L~~l--~~~~~~w~~L~~-~~G~i~l~l~~ 125 (362)
++++||.+.+++.++ .+..+.|++|.+ ..|++++++.|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 889999999999987 445689999986 57999887754
No 14
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.79 E-value=1.5e-18 Score=144.92 Aligned_cols=110 Identities=23% Similarity=0.421 Sum_probs=94.3
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEC--CeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCG--SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG 93 (362)
|.|+|++|++|+. ..|.+||||++.++ ....+|+++.+++||.|+|.|.|.+....+.|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999987 67899999999997 3567999999999999999999999766778999999999998999999
Q ss_pred EEEEEeccC--CCcceEEEEccCC-------CCeeEEEEEEee
Q 018029 94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK 127 (362)
Q Consensus 94 ~~~i~L~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~ 127 (362)
++.+++.++ ......|++|.++ .|++.+++.+..
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999997 4556889999754 366666666543
No 15
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.79 E-value=3e-18 Score=145.15 Aligned_cols=115 Identities=23% Similarity=0.414 Sum_probs=99.3
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS 89 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~d 89 (362)
...|.|.|+|++|++|+..|..|.+||||++.++....+|+++.++.||.|||+|.|.+.+. ...|.|+|||++..+++
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence 44699999999999999999999999999999999999999999999999999999999754 56799999999998899
Q ss_pred ceeEEEEEEeccCCC-------cceEEEEccC-CCCeeEEEEEE
Q 018029 90 TVLGSVIVTVESEGQ-------TGAVWYTLDS-PSGQVCLHIKT 125 (362)
Q Consensus 90 dfIG~~~i~L~~l~~-------~~~~w~~L~~-~~G~i~l~l~~ 125 (362)
++||++.+++.++.. ....|..|.. ..|++++.+.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 999999999998621 2335666654 45898888764
No 16
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=2e-18 Score=148.58 Aligned_cols=112 Identities=17% Similarity=0.339 Sum_probs=97.0
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccC-CCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCcee
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL 92 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~-t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfI 92 (362)
.|.|+|++|++|++++.+|.+||||++.++++..+|+++.+ ++||.|||.|.|.+.++ ...|.|+|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37899999999999999999999999999999999999976 69999999999999754 46899999999988889999
Q ss_pred EEEEEEeccCC------CcceEEEEccCCC------------CeeEEEEEEe
Q 018029 93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTI 126 (362)
Q Consensus 93 G~~~i~L~~l~------~~~~~w~~L~~~~------------G~i~l~l~~~ 126 (362)
|++.++|.++. ...++||+|..+. |++++++.+.
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 99999999873 2358999998532 6677776655
No 17
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.79 E-value=4.7e-18 Score=141.99 Aligned_cols=113 Identities=16% Similarity=0.310 Sum_probs=98.5
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI 92 (362)
..+++|+|++|++|+..+..|.+||||++.++.+..+|+++.++.||.|+|.|.|.+......|.|+|||++.. ++++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 46899999999999999999999999999999999999999999999999999999887788999999999876 58999
Q ss_pred EEEEEEeccCCCcceEEEEccC--------CCCeeEEEEEEe
Q 018029 93 GSVIVTVESEGQTGAVWYTLDS--------PSGQVCLHIKTI 126 (362)
Q Consensus 93 G~~~i~L~~l~~~~~~w~~L~~--------~~G~i~l~l~~~ 126 (362)
|.+.+++.+.......|++|.. ..|.+.+++.+.
T Consensus 81 G~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDSQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCCcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999988777778999952 236666555443
No 18
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.78 E-value=1e-18 Score=143.33 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=86.9
Q ss_pred CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC----eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 018029 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (362)
Q Consensus 10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~----~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D 82 (362)
.+..+.|+|+|++|++|+ . .|.+||||++++.. .+++|++.++|+||.|||+|.|.++. ....|.|+|||
T Consensus 10 ~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 456799999999999998 3 46699999999842 56799999999999999999999874 25679999999
Q ss_pred cCCCCCCceeEEEEEEeccC--CCcceEEEEc
Q 018029 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L 112 (362)
+|.++++++||++.+++.++ +.+.++|..|
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999999999975 6777888765
No 19
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.78 E-value=3e-18 Score=143.40 Aligned_cols=110 Identities=29% Similarity=0.533 Sum_probs=95.6
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC--------
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII-------- 86 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~-------- 86 (362)
.|.|+|++|++|+.+|..|.+||||++.++....+|+++.+++||.|+|.|.|.+......|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999999999999999999998888899999999999999999999876667899999999853
Q ss_pred ---CCCceeEEEEEEeccCCCcceEEEEccCCCC--eeEEEEE
Q 018029 87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSPSG--QVCLHIK 124 (362)
Q Consensus 87 ---~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G--~i~l~l~ 124 (362)
+++++||.+.+++.++.+..+.|+.|.++++ .+++.|.
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~ 124 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIR 124 (127)
T ss_pred ccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEE
Confidence 4689999999999999777889999986443 2444443
No 20
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.78 E-value=3e-18 Score=142.17 Aligned_cols=109 Identities=25% Similarity=0.437 Sum_probs=94.7
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEE
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS 94 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~ 94 (362)
|.|+|++|++|++++..|.+||||++.++... .+|+++.+++||.|||.|.|.+.+..+.|.|.|||++..+++++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999999999999999999997654 59999999999999999999998766899999999999999999999
Q ss_pred EEEEeccCC---CcceEEEEccCC------CCeeEEEEE
Q 018029 95 VIVTVESEG---QTGAVWYTLDSP------SGQVCLHIK 124 (362)
Q Consensus 95 ~~i~L~~l~---~~~~~w~~L~~~------~G~i~l~l~ 124 (362)
+.++++++. ...+.|++|.+. .|++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999998873 236899999752 466666553
No 21
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.78 E-value=4.8e-18 Score=141.07 Aligned_cols=100 Identities=29% Similarity=0.579 Sum_probs=91.2
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfIG 93 (362)
.|.|+|++|++|+.++..+.+||||.+.++....+|+++.+++||.|+|+|.|.+... ...|.|+|||++..+++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 3789999999999999999999999999998889999999999999999999999764 578999999999998999999
Q ss_pred EEEEEeccC--CCcceEEEEccC
Q 018029 94 SVIVTVESE--GQTGAVWYTLDS 114 (362)
Q Consensus 94 ~~~i~L~~l--~~~~~~w~~L~~ 114 (362)
.+.+++.++ ....+.|+.|.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCC
Confidence 999999988 345688999975
No 22
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.78 E-value=2.6e-18 Score=142.82 Aligned_cols=99 Identities=22% Similarity=0.350 Sum_probs=87.7
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEe-c--C-CCcEEEEEEEEc
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-D--E-LPVQIIVTIYDW 83 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v-~--~-~~~~L~~~V~D~ 83 (362)
.+.|.|+|++|++|++++ .+.+||||++++. ..+++|++++++.||.|||+|.|.+ . + ....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 9999999999995 3467999999999999999999987 3 1 356799999999
Q ss_pred CCCCCCceeEEEEEEeccC--CCcceEEEEc
Q 018029 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L 112 (362)
|..+++++||++.++|.++ ......||+|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999998 4446889987
No 23
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.77 E-value=4e-18 Score=141.01 Aligned_cols=99 Identities=16% Similarity=0.340 Sum_probs=85.3
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEE-C------CeeEeeccccCCCCCeeccEEEEEecCC----CcEEEEEEEEc
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITC-G------SEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW 83 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-~------~~~~rT~~i~~t~nP~W~e~f~f~v~~~----~~~L~~~V~D~ 83 (362)
.|+|+|++|++|+..+ .|.+||||++++ + .++++|+++.+++||.|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3789999999999988 599999999997 2 2346899999999999999999999732 24599999999
Q ss_pred CCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~ 114 (362)
|..+++++||++.+++.++ ++....|++|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9888899999999999998 556678999975
No 24
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.76 E-value=1.5e-17 Score=144.45 Aligned_cols=112 Identities=20% Similarity=0.383 Sum_probs=94.9
Q ss_pred eeEEEEEEEeeecCCCCC------------------------------CCCCCCcEEEEEECCee-EeeccccCCCCCee
Q 018029 13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW 61 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d------------------------------~~g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W 61 (362)
.|+|.|+|++|++|+.+| ..|.+||||++.+++.. .+|+++.++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 588999999999999987 35679999999998655 59999999999999
Q ss_pred ccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccCC-------CCeeEEEEEE
Q 018029 62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKT 125 (362)
Q Consensus 62 ~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~-------~G~i~l~l~~ 125 (362)
||.|.|.+.+..+.|.|.|||+|..+ +++||++.++++++ +...+.|++|.+. .|++++++.+
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998877788999999999875 58999999999997 5567899999642 3566666654
No 25
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=7.3e-18 Score=141.80 Aligned_cols=110 Identities=23% Similarity=0.387 Sum_probs=93.1
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-------eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-------~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~ 87 (362)
.|.|+|++|++|+.++..|.+||||++.+... ..+|+++.++.||.|||+|.|.+......|.|+|||++..+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 37899999999999999999999999998643 46899999999999999999999876778999999999998
Q ss_pred CCceeEEEEEEeccCCC--------cceEEEEccCC------CCeeEEEEE
Q 018029 88 KSTVLGSVIVTVESEGQ--------TGAVWYTLDSP------SGQVCLHIK 124 (362)
Q Consensus 88 ~ddfIG~~~i~L~~l~~--------~~~~w~~L~~~------~G~i~l~l~ 124 (362)
++++||++.+++.++.. ....||+|.+. .|++++.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~ 131 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMA 131 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEe
Confidence 99999999999998722 23589999852 355555544
No 26
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=2.2e-17 Score=137.52 Aligned_cols=113 Identities=25% Similarity=0.472 Sum_probs=97.9
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEECC---eeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS 89 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~---~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~d 89 (362)
+.++|+|++|++|+..+..+.+||||++.+.. ...+|+++.+++||.|||+|.|.+... ...|.|+|||++..+++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 36899999999999999999999999998853 356999999999999999999999864 57899999999988899
Q ss_pred ceeEEEEEEeccC-----CCcceEEEEccCCCCeeEEEEEEee
Q 018029 90 TVLGSVIVTVESE-----GQTGAVWYTLDSPSGQVCLHIKTIK 127 (362)
Q Consensus 90 dfIG~~~i~L~~l-----~~~~~~w~~L~~~~G~i~l~l~~~~ 127 (362)
++||++.++|.+. +...+.|++|.+ .|++++.+.+..
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEee
Confidence 9999999999874 224678999986 799988887654
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=1e-17 Score=138.98 Aligned_cols=104 Identities=23% Similarity=0.441 Sum_probs=89.6
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeEE
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLGS 94 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~ddfIG~ 94 (362)
|.|+|++|++|+.+ .+||||++.+++...+|+++.++.||.|||+|.|.+.. ....|.++|||+|.. ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999887 79999999999888999999999999999999999876 467899999999976 7899999
Q ss_pred EEEEeccCCC-------cceEEEEccCCC-----CeeEEEEE
Q 018029 95 VIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIK 124 (362)
Q Consensus 95 ~~i~L~~l~~-------~~~~w~~L~~~~-----G~i~l~l~ 124 (362)
+.+++.++.. ....||+|.+.. |++++.|.
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~ 118 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVW 118 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEE
Confidence 9999999732 245899998643 66666554
No 28
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=1.2e-17 Score=142.73 Aligned_cols=103 Identities=16% Similarity=0.287 Sum_probs=90.2
Q ss_pred eeEEEEEEEeeecCCCCC-CCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEE-EcCC
Q 018029 13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI 85 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~-D~d~ 85 (362)
.+.|.|+|++|+||++++ ..|.+||||++++. + .+++|+++++++||.|||+|.|.+......|.++|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 478999999999999874 67899999999993 2 367999999999999999999999865778999999 6888
Q ss_pred CCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029 86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (362)
Q Consensus 86 ~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~ 115 (362)
.+++++||++.++|.++ ......||+|.++
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 88899999999999998 4566799999874
No 29
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.75 E-value=6.8e-18 Score=140.88 Aligned_cols=103 Identities=21% Similarity=0.368 Sum_probs=89.2
Q ss_pred CceeEEEEEEEeeecCCCCCCC-CCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~-g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~ 81 (362)
...+.|.|+|++|++|++++.. |.+||||.+++. ..+++|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 3457899999999999999976 899999999983 235699999999999999999999863 2467999999
Q ss_pred EcCCCCCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~ 113 (362)
|++..+++++||++.++|.++ ......||+|.
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 999999999999999999997 44567899874
No 30
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.75 E-value=1.4e-17 Score=138.58 Aligned_cols=103 Identities=22% Similarity=0.418 Sum_probs=91.8
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD 84 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~d 84 (362)
+..+.|.|+|++|++|+.++..|.+||||.+.+. ....+|++++++.||.|+|+|.|.+... ...|.++|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 4568999999999999999999999999999983 4467999999999999999999998742 467999999999
Q ss_pred CCCCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029 85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (362)
Q Consensus 85 ~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~ 113 (362)
..+++++||++.++++++ ++..+.|+.|.
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 998999999999999998 56778999986
No 31
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.75 E-value=3.9e-17 Score=137.38 Aligned_cols=113 Identities=19% Similarity=0.336 Sum_probs=98.5
Q ss_pred eeEEEEEEEeeecCCCCCCC----------CCCCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecCCCcEEEEEEE
Q 018029 13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY 81 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~----------g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~ 81 (362)
.|.|.|+|++|++|++.+.. |.+||||++.++.+. .+|+++.++.||.|||+|.|.+.+ ...|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence 37899999999999988863 679999999998765 589999999999999999999974 578999999
Q ss_pred EcCCCCCCceeEEEEEEeccCC----CcceEEEEccCCCCeeEEEEEEee
Q 018029 82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTIK 127 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l~----~~~~~w~~L~~~~G~i~l~l~~~~ 127 (362)
|++..+++++||++.++|.++. ...+.|++|.+ .|++++++.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-CcEEEEEEEEec
Confidence 9998888999999999999862 44689999995 799999888753
No 32
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=2e-17 Score=137.00 Aligned_cols=105 Identities=22% Similarity=0.413 Sum_probs=89.0
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI 92 (362)
++.|.|+|++|++|+.++ ..||||++++++++.+|.+.++ .||.|||.|.|.+.+....|.|+|||+|.. .||+|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCce
Confidence 368999999999997654 4589999999999999999987 499999999999988777799999999865 89999
Q ss_pred EEEEEEeccC--C--CcceEEEEccC----CCCeeEEE
Q 018029 93 GSVIVTVESE--G--QTGAVWYTLDS----PSGQVCLH 122 (362)
Q Consensus 93 G~~~i~L~~l--~--~~~~~w~~L~~----~~G~i~l~ 122 (362)
|++.++|.++ + ....+||+|.+ +.|++...
T Consensus 76 G~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~~ 113 (127)
T cd08394 76 GTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVGT 113 (127)
T ss_pred EEEEEEhHHcccCCCCCCCccEecChHHhccCCeEecc
Confidence 9999999997 2 33478999986 55665443
No 33
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=1.5e-17 Score=138.19 Aligned_cols=103 Identities=21% Similarity=0.376 Sum_probs=89.7
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY 81 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~~L~~~V~ 81 (362)
...+.|.|+|++|++|+.++..+.+||||++.+.. ..++|++++++.||.|+|+|.|.+.. ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 45688999999999999999999999999999853 46699999999999999999998643 2567999999
Q ss_pred EcCCCCCCceeEEEEEEeccC-CCcceEEEEcc
Q 018029 82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l-~~~~~~w~~L~ 113 (362)
|++..+++++||++.++|.+. ......||+|+
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~ 125 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence 999988999999999999984 44567899984
No 34
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=5.6e-17 Score=135.52 Aligned_cols=111 Identities=22% Similarity=0.337 Sum_probs=92.5
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST 90 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~dd 90 (362)
...|.|+|++|++|+.. +.+||||.+.+++.. .+|++ .++.||.|||.|.|.+.+. ...+.|.|||++..++++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 35699999999999875 478999999998644 58887 4689999999999987543 357999999999999999
Q ss_pred eeEEEEEEeccC--CCcceEEEEccCC-------CCeeEEEEEEee
Q 018029 91 VLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK 127 (362)
Q Consensus 91 fIG~~~i~L~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~ 127 (362)
+||++.++|..+ +...+.|++|.+. .|++++.+.+..
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 999999999987 4556799999753 288888888764
No 35
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=4.1e-17 Score=137.92 Aligned_cols=114 Identities=19% Similarity=0.416 Sum_probs=95.6
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC----------CCcEEEEEEEEc
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW 83 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~----------~~~~L~~~V~D~ 83 (362)
+.|+|+|++|++|+++|..|.+||||++.+++...+|+++.+++||.|||.|.|.+.. ....|.++|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 4789999999999999999999999999999999999999999999999999997532 135699999999
Q ss_pred CCCCCCceeEEEEE-EeccC-----CCcceEEEEccC---CCCeeEEEEEEee
Q 018029 84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTIK 127 (362)
Q Consensus 84 d~~~~ddfIG~~~i-~L~~l-----~~~~~~w~~L~~---~~G~i~l~l~~~~ 127 (362)
|..+++++||++.+ ++..+ .....+|++|.. ..|+|.+.+++..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence 99999999999987 33333 245679999974 3478887777654
No 36
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.74 E-value=1.7e-17 Score=138.45 Aligned_cols=103 Identities=17% Similarity=0.294 Sum_probs=89.3
Q ss_pred CceeEEEEEEEeeecCCCCCC-CCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~-~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~ 81 (362)
+..+.|.|+|++|++|++++. .|.+||||++++. ..+++|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 456889999999999998875 5889999999983 235699999999999999999999863 2557999999
Q ss_pred EcCCCCCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~ 113 (362)
|++..+++++||++.++|..+ ....+.|++|.
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999999999999999997 55678999983
No 37
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.74 E-value=2.4e-17 Score=137.05 Aligned_cols=103 Identities=23% Similarity=0.412 Sum_probs=91.0
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD 84 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d 84 (362)
...+.|.|+|++|++|+.++..|.+||||++.+. ....+|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 3457899999999999999999999999999984 346699999999999999999999864 2467999999999
Q ss_pred CCCCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029 85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (362)
Q Consensus 85 ~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~ 113 (362)
..+++++||++.+++.++ +...++|+.|.
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 998999999999999997 56778999986
No 38
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.74 E-value=2.1e-17 Score=133.53 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=87.9
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG 93 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfIG 93 (362)
.|.|+|++|++|+..+..+.+||||+++++++.++|+++.++.||.|||.|.|.+..+ ...|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 3789999999999999899999999999999999999999999999999999999863 6689999999876 78999
Q ss_pred EEEEEeccC--C--CcceEEEEccCC
Q 018029 94 SVIVTVESE--G--QTGAVWYTLDSP 115 (362)
Q Consensus 94 ~~~i~L~~l--~--~~~~~w~~L~~~ 115 (362)
++.++|.++ . ...+.||+|.++
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCCC
Confidence 999999987 2 246899999863
No 39
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.74 E-value=1.4e-17 Score=135.83 Aligned_cols=98 Identities=21% Similarity=0.389 Sum_probs=87.7
Q ss_pred EEEEEEeeecCCCCCC-CCCCCcEEEEEECCeeEeeccccCCCCCee-ccEEEEEecCC---CcEEEEEEEEcCCCCCCc
Q 018029 16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST 90 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~-~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W-~e~f~f~v~~~---~~~L~~~V~D~d~~~~dd 90 (362)
|.|+|++|++|+.++. .|.+||||++.++...++|+++.+++||.| +|+|.|.+... .+.|.|+|||++..++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999999884 789999999999999999999999999999 99999999742 468999999999999999
Q ss_pred eeEEEEEEeccCCC-----cceEEEEcc
Q 018029 91 VLGSVIVTVESEGQ-----TGAVWYTLD 113 (362)
Q Consensus 91 fIG~~~i~L~~l~~-----~~~~w~~L~ 113 (362)
+||++.+++.++.. ....||+|.
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999833 367899985
No 40
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.73 E-value=1.5e-17 Score=135.74 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=86.4
Q ss_pred eEEEEEEEeeecCCCCCCC-CCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecC----CCcEEEEEEEEcCC
Q 018029 14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI 85 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~-g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~~L~~~V~D~d~ 85 (362)
|+|.|+|++|++|+..+.. |.+||||++.+. ....+|+++++++||.|+|.|.|.+.. ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999988 999999999984 345799999999999999999998764 24679999999999
Q ss_pred CCCCceeEEEEEEeccCCCcceEEEEcc
Q 018029 86 IWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (362)
Q Consensus 86 ~~~ddfIG~~~i~L~~l~~~~~~w~~L~ 113 (362)
.+++++||++.+++.++. ....|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~-~~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELI-EDRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHh-cCCCCCccc
Confidence 999999999999999985 335677764
No 41
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.73 E-value=3e-17 Score=140.76 Aligned_cols=99 Identities=21% Similarity=0.384 Sum_probs=85.5
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEec---------------C-CC
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------E-LP 73 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~---------------~-~~ 73 (362)
.|.|+|++|++|+. .+|.+||||++.+.. ..++|+++.+++||.|||.|.|.+. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999988 578999999999964 5679999999999999999999984 1 12
Q ss_pred cEEEEEEEEcCCCCCCceeEEEEEEeccCC---CcceEEEEccCC
Q 018029 74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP 115 (362)
Q Consensus 74 ~~L~~~V~D~d~~~~ddfIG~~~i~L~~l~---~~~~~w~~L~~~ 115 (362)
..|.|.|||++..++++|||++.+++..+. .....||+|.++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 469999999998889999999999999984 357899999864
No 42
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.73 E-value=3.2e-17 Score=136.57 Aligned_cols=103 Identities=14% Similarity=0.211 Sum_probs=89.8
Q ss_pred CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC------CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEE
Q 018029 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI 80 (362)
Q Consensus 10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~------~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V 80 (362)
.+..+.|.|+|++|+||++++..+.+||||.+++- ..+++|++.++++||.|||+|.|.+.. ....|.|+|
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 45668899999999999999988999999999982 246799999999999999999999874 357899999
Q ss_pred EEcCCCCCCceeEEEEEEeccC---CCcceEEEEc
Q 018029 81 YDWDIIWKSTVLGSVIVTVESE---GQTGAVWYTL 112 (362)
Q Consensus 81 ~D~d~~~~ddfIG~~~i~L~~l---~~~~~~w~~L 112 (362)
||++..+++++||++.++|+++ .+....||.|
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999988999999999999987 2346779876
No 43
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=8e-17 Score=133.48 Aligned_cols=101 Identities=21% Similarity=0.307 Sum_probs=91.5
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI 92 (362)
|.|.|+|++|++|++.+..+.+||||++.++. ...+|+++.++.||.|+|.|.|.+....+.|.|+|||++..+++++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 67999999999999999999999999999975 45799999999999999999999987778999999999999999999
Q ss_pred EEEEEEeccC-CCcceEEEEccC
Q 018029 93 GSVIVTVESE-GQTGAVWYTLDS 114 (362)
Q Consensus 93 G~~~i~L~~l-~~~~~~w~~L~~ 114 (362)
|++.+++.++ ....+.||.|..
T Consensus 81 G~~~~~l~~l~~~~~~~~~~~~~ 103 (120)
T cd04045 81 GSVEINVSDLIKKNEDGKYVEYD 103 (120)
T ss_pred eEEEEeHHHhhCCCCCceEEecC
Confidence 9999999997 556788888865
No 44
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=4e-17 Score=132.77 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=80.3
Q ss_pred eEEEEEEEeeecCCCCCCC----CCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC--CCcEEEEEEEEcCCCC
Q 018029 14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW 87 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~----g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~--~~~~L~~~V~D~d~~~ 87 (362)
|+|.|+|++|++|++.+.. +.+||||+++++.+.++|+++++++||.|||.|.|.+.+ ....|.|+|||+|..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999988642 358999999999888999999999999999999999864 3457999999999999
Q ss_pred CCceeEEEEEEeccC
Q 018029 88 KSTVLGSVIVTVESE 102 (362)
Q Consensus 88 ~ddfIG~~~i~L~~l 102 (362)
++++||++.++|.++
T Consensus 81 ~dd~IG~~~l~L~~l 95 (108)
T cd04039 81 FNDYVATGSLSVQEL 95 (108)
T ss_pred CCcceEEEEEEHHHH
Confidence 999999999999987
No 45
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.73 E-value=1e-16 Score=133.29 Aligned_cols=98 Identities=24% Similarity=0.416 Sum_probs=86.9
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEC-CeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC--Ccee
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STVL 92 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~--ddfI 92 (362)
|+|+|++|++|+.++..+.+||||++.++ ...++|+++.+++||.|+|.|.|.+.. .+.|.|+|||++..++ +++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999999999999999999996 667899999999999999999999976 7789999999998765 5899
Q ss_pred EEEEEEeccCC---CcceEEEEccC
Q 018029 93 GSVIVTVESEG---QTGAVWYTLDS 114 (362)
Q Consensus 93 G~~~i~L~~l~---~~~~~w~~L~~ 114 (362)
|++.+++.++. .....|++|..
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l~~ 105 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDLRK 105 (123)
T ss_pred eEEEEEHHHccccCCCccceeEeec
Confidence 99999999972 23467999954
No 46
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.73 E-value=3.6e-17 Score=137.10 Aligned_cols=103 Identities=18% Similarity=0.376 Sum_probs=88.8
Q ss_pred CceeEEEEEEEeeecCCCCCCC-CCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~-g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~ 81 (362)
...+.|.|+|++|+||++++.. |.+||||++.+. ..+++|+++++++||.|||+|.|.+... ...|.+.||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 4457999999999999999875 999999999983 3466999999999999999999998642 468999999
Q ss_pred EcCCCCCCceeEEEEEEeccCC-----CcceEEEEcc
Q 018029 82 DWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD 113 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l~-----~~~~~w~~L~ 113 (362)
|++..+++++||++.++|.++. .....||+|.
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 9999889999999999999872 2456899873
No 47
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=6.9e-17 Score=133.84 Aligned_cols=113 Identities=20% Similarity=0.374 Sum_probs=93.8
Q ss_pred eEEEEEEEeeecCCCCC-CCCCCCcEEEEEECC--eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 018029 14 YLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST 90 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~~--~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~dd 90 (362)
|.|.|+|++|++|+..+ ..+.+||||++.++. ...+|+++.++.||.|+|.|.|.+.+..+.|.|+|||++..++++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 68999999999999765 356799999999977 678999999999999999999999866789999999999988999
Q ss_pred eeEEEEEEeccCC--Ccce-EEEEccC---CCCeeEEEEEEe
Q 018029 91 VLGSVIVTVESEG--QTGA-VWYTLDS---PSGQVCLHIKTI 126 (362)
Q Consensus 91 fIG~~~i~L~~l~--~~~~-~w~~L~~---~~G~i~l~l~~~ 126 (362)
+||.+.+++.++. .... .|+.+.. ..|++++.+++.
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~ 123 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFF 123 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeC
Confidence 9999999999972 2222 3444442 347787777764
No 48
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.72 E-value=4.5e-17 Score=134.76 Aligned_cols=100 Identities=30% Similarity=0.457 Sum_probs=85.8
Q ss_pred ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecC--CCcEEEEEEEEcC
Q 018029 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD 84 (362)
Q Consensus 12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~--~~~~L~~~V~D~d 84 (362)
..+.|.|+|++|++|++++ .|.+||||.+++. ..+++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4578999999999999998 8899999999984 235689999999999999999999864 2456899999999
Q ss_pred CCC-CCceeEEEEEEeccC--CCcceEEEEc
Q 018029 85 IIW-KSTVLGSVIVTVESE--GQTGAVWYTL 112 (362)
Q Consensus 85 ~~~-~ddfIG~~~i~L~~l--~~~~~~w~~L 112 (362)
... ++++||++.+++.++ +...+.||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 875 478999999999998 4446789976
No 49
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.72 E-value=9.2e-17 Score=133.61 Aligned_cols=104 Identities=21% Similarity=0.347 Sum_probs=90.6
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE---CCeeEeeccccCCCCCeeccEEEEEecC----CCcEEEEEEEEc
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW 83 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l---~~~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~~L~~~V~D~ 83 (362)
...+.|.|+|++|++|+.++..+.+||||.+.+ +....+|++++++.||.|||+|.|.+.. ....|.++|||+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 446789999999999999999999999999998 3556799999999999999999997532 245799999999
Q ss_pred CCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~ 114 (362)
+..+++++||++.+++.++ +...+.|+.|.+
T Consensus 93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 9998999999999999997 566789999864
No 50
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.72 E-value=9.3e-17 Score=134.60 Aligned_cols=104 Identities=17% Similarity=0.313 Sum_probs=88.0
Q ss_pred CceeEEEEEEEeeecCCCCCCC-CCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD 82 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~-g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~D 82 (362)
...+.|.|+|++|++|+.++.. |.+||||++.+. .++.+|+++++++||.|||+|.|. +.. ....|.++|||
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 4568999999999999998876 899999999984 445699999999999999999994 432 23469999999
Q ss_pred cCCCCCCceeEEEEEEeccC--C--CcceEEEEccC
Q 018029 83 WDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDS 114 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l--~--~~~~~w~~L~~ 114 (362)
+|..+++++||++.++|.++ . +....|++|++
T Consensus 93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred cCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 99999999999999999997 2 45667888764
No 51
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.72 E-value=5.5e-18 Score=173.37 Aligned_cols=105 Identities=35% Similarity=0.651 Sum_probs=92.2
Q ss_pred ccceee--ccCCCcceeeeehhhhhhccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccC-cEEEE
Q 018029 164 PLQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-AITII 240 (362)
Q Consensus 164 ~f~~~F--~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~-~i~i~ 240 (362)
.|...+ ++|+.+.|+++|+|++.+.+++|||||++..++||+|+++||++|++||+.+|..|+|.++++++| +|+|.
T Consensus 108 ~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i~ 187 (590)
T KOG1032|consen 108 NLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEIT 187 (590)
T ss_pred hhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEEe
Confidence 344444 388999999999999999999999999999999999999999999999999999999999999999 67776
Q ss_pred EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHHHHHH
Q 018029 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNY 284 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~~~~~~ 284 (362)
+ +..+|.|+||.+||.+|.+|.-+.+..
T Consensus 188 t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~ 215 (590)
T KOG1032|consen 188 T----------------GTTKYIFVSLLSRDATYKLIKLLLHKF 215 (590)
T ss_pred c----------------CCCcceeeecccCccHHHHHHHhhhhc
Confidence 3 346999999999999999885555433
No 52
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.71 E-value=9.2e-17 Score=133.55 Aligned_cols=102 Identities=26% Similarity=0.455 Sum_probs=92.5
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccC-CCCCeeccEEEEEecCC----CcEEEEEEEEcCCCCC
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK 88 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~-t~nP~W~e~f~f~v~~~----~~~L~~~V~D~d~~~~ 88 (362)
|.|.|+|++|++|+..+..+.+||||+++++...++|++..+ +.||.||+.|.|.+.+. .+.|.|+|||.+..++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 578999999999999998999999999999988889998874 89999999999999865 4679999999999889
Q ss_pred CceeEEEEEEeccC--CCcceEEEEccCC
Q 018029 89 STVLGSVIVTVESE--GQTGAVWYTLDSP 115 (362)
Q Consensus 89 ddfIG~~~i~L~~l--~~~~~~w~~L~~~ 115 (362)
+++||++.+++.++ .+..+.|+.|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999997 5677899999874
No 53
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=8.6e-17 Score=134.10 Aligned_cols=103 Identities=19% Similarity=0.319 Sum_probs=90.1
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D 82 (362)
+..+.|.|+|++|++|+.++..+.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.++|||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 4568899999999999999999999999999984 4567999999999999999999998632 4679999999
Q ss_pred cCCC--CCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029 83 WDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD 113 (362)
Q Consensus 83 ~d~~--~~ddfIG~~~i~L~~l--~~~~~~w~~L~ 113 (362)
++.. +++++||++.++|.++ ......||+|.
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9875 6899999999999997 45677899884
No 54
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.71 E-value=2e-17 Score=139.19 Aligned_cols=109 Identities=17% Similarity=0.304 Sum_probs=94.5
Q ss_pred CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 018029 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (362)
Q Consensus 10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~ 81 (362)
....+.|.|+|++|++|+++|..|.+||||++.+. ....+|+++.+++||.|||+|.|.+... ...|.|+||
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 35578999999999999999999999999999984 2356999999999999999999998642 467999999
Q ss_pred EcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
|+|..+++++||++.+++...+....+|+.+....|+
T Consensus 89 d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~ 125 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDK 125 (133)
T ss_pred eCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCC
Confidence 9999889999999999999877778899988654444
No 55
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.71 E-value=1.3e-16 Score=132.24 Aligned_cols=102 Identities=20% Similarity=0.371 Sum_probs=89.4
Q ss_pred CceeEEEEEEEeeecCCCCC-CCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~ 81 (362)
...+.|.|+|++|++|+.++ ..+.+||||++++. ....+|++++++.||.|||+|.|.+.+. ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 45688999999999999998 78899999999883 1457999999999999999999998742 567999999
Q ss_pred EcCCCCCCceeEEEEEEeccC--CCcceEEEEc
Q 018029 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L 112 (362)
|++..+++++||++.++|.++ +...+.||+|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999988999999999999998 5667889986
No 56
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.70 E-value=2.3e-16 Score=134.92 Aligned_cols=88 Identities=25% Similarity=0.468 Sum_probs=84.2
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG 93 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG 93 (362)
|.|.|+|++|++|+..+. +.+||||++.++++..+|++++++.||.|+|+|.|.+.++...|.|+|||++..+++++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999999887 8999999999999999999999999999999999999988889999999999999999999
Q ss_pred EEEEEeccC
Q 018029 94 SVIVTVESE 102 (362)
Q Consensus 94 ~~~i~L~~l 102 (362)
++.+++.++
T Consensus 81 ~a~i~l~~l 89 (145)
T cd04038 81 EAEIDLEPL 89 (145)
T ss_pred EEEEEHHHh
Confidence 999999997
No 57
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.70 E-value=1.6e-16 Score=131.78 Aligned_cols=104 Identities=20% Similarity=0.324 Sum_probs=90.2
Q ss_pred CceeEEEEEEEeeecCCCCC-CCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 018029 11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW 83 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~ 83 (362)
...+.|.|+|++|++|+.++ ..+.+||||++++. ....+|+++++++||.|+|.|.|.+... ...|.|+|||+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 34578999999999999998 68899999999983 4456899999999999999999998642 45799999999
Q ss_pred CCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029 84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~ 114 (362)
+..+++++||++.++|.++ ......|++|++
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 9988899999999999997 455679999864
No 58
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.70 E-value=1.1e-16 Score=133.18 Aligned_cols=110 Identities=23% Similarity=0.415 Sum_probs=94.1
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECC-eeEeecccc-CCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW 87 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-~~~rT~~i~-~t~nP~W~e~f~f~v~~~-----~~~L~~~V~D~d~~~ 87 (362)
.|.|+|++|++|+..+..+.+||||+++++. ...+|++.. ++.||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3789999999999999899999999999987 778999875 589999999999999765 578999999999888
Q ss_pred CCceeEEEEEEeccC--CCc-----ceEEEEccCCCCeeEEEEE
Q 018029 88 KSTVLGSVIVTVESE--GQT-----GAVWYTLDSPSGQVCLHIK 124 (362)
Q Consensus 88 ~ddfIG~~~i~L~~l--~~~-----~~~w~~L~~~~G~i~l~l~ 124 (362)
++++||++.+++.++ ... ...||.|..+.|+..+.|.
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~ 124 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN 124 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence 899999999999997 222 3689999876676655543
No 59
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=3.5e-16 Score=130.64 Aligned_cols=107 Identities=20% Similarity=0.331 Sum_probs=90.6
Q ss_pred EEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCceeEEEE
Q 018029 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI 96 (362)
Q Consensus 20 Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~ddfIG~~~ 96 (362)
|++|++|+. ..|.+||||++.++..+++|++++++.||.|+|+|.|.+.. ..+.|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999988 68899999999999888999999999999999999999964 3678999999999998999999999
Q ss_pred EEeccC--CCcceEEEEccCC-----CCeeEEEEEEeec
Q 018029 97 VTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTIKL 128 (362)
Q Consensus 97 i~L~~l--~~~~~~w~~L~~~-----~G~i~l~l~~~~~ 128 (362)
+++.++ +.....|++|..+ .|++++.+.+.+.
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 999997 4556789999642 2455555555443
No 60
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.70 E-value=1.4e-16 Score=137.19 Aligned_cols=101 Identities=26% Similarity=0.572 Sum_probs=88.8
Q ss_pred CCCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----------------------------eeEeeccccCCCC
Q 018029 8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----------------------------EKRFSSMVPGSRY 58 (362)
Q Consensus 8 ~~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----------------------------~~~rT~~i~~t~n 58 (362)
...++.+.|.|+|++|++|.++|.+|.+||||++.+.. ...+|+++.+++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 34567899999999999999999999999999999842 2368999999999
Q ss_pred CeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEeccC-CCcceEEEEc
Q 018029 59 PMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL 112 (362)
Q Consensus 59 P~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l-~~~~~~w~~L 112 (362)
|.|||+|.|.+.+. .+.|.|+|||++ +++||++.+++.++ +...+.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 99999999999753 578999999997 78999999999998 4667899987
No 61
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.70 E-value=1.9e-16 Score=132.01 Aligned_cols=104 Identities=19% Similarity=0.345 Sum_probs=89.7
Q ss_pred CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 018029 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD 82 (362)
Q Consensus 10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~D 82 (362)
......|.|+|++|+||++++..|.+||||.+.+. .++.+|++.++ .||.|||+|.|. +.. ....|.++|||
T Consensus 12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 34567899999999999999999999999998762 45679998887 999999999998 653 35679999999
Q ss_pred cCCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~ 114 (362)
++..+++++||++.++|.++ ......|++|+|
T Consensus 91 ~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 91 VERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 99999999999999999998 556788999974
No 62
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.69 E-value=9.4e-17 Score=135.80 Aligned_cols=109 Identities=19% Similarity=0.389 Sum_probs=93.7
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D 82 (362)
...+.|.|+|++|++|+.+|..|.+||||++.+. . .+.+|+++++++||.|+|+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 3457899999999999999999999999999983 2 24589999999999999999999863 34579999999
Q ss_pred cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCee
Q 018029 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV 119 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~i 119 (362)
+|..+++++||++.+++...+....+|+.|....|+.
T Consensus 92 ~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred CCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCe
Confidence 9999999999999999998766778899987655654
No 63
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.69 E-value=2.8e-16 Score=128.23 Aligned_cols=99 Identities=23% Similarity=0.490 Sum_probs=86.6
Q ss_pred ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCC
Q 018029 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDII 86 (362)
Q Consensus 12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-----~~~L~~~V~D~d~~ 86 (362)
..+.|+|+|++|++|+ .|.+||||++++++++++|+++.++.||.|+|.|.|.+..+ ...|.|+|||++..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4588999999999998 57899999999999999999999999999999999997532 35799999999998
Q ss_pred CCCceeEEEEEEeccC--C---CcceEEEEccC
Q 018029 87 WKSTVLGSVIVTVESE--G---QTGAVWYTLDS 114 (362)
Q Consensus 87 ~~ddfIG~~~i~L~~l--~---~~~~~w~~L~~ 114 (362)
+++++||++.++|+++ . +....|++|..
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8899999999999987 2 23577999853
No 64
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.69 E-value=6.8e-17 Score=136.77 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=92.7
Q ss_pred CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---C--eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 018029 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S--EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY 81 (362)
Q Consensus 10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~--~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~ 81 (362)
.+....|.|+|++|++|+..+..|.+||||++++. . .+.+|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 11 ~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~ 90 (136)
T cd08406 11 LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVA 90 (136)
T ss_pred cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence 34567899999999999999999999999999983 2 25589999999999999999999873 3567999999
Q ss_pred EcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
|+|..+++++||++.+.....+...++|..+....++
T Consensus 91 ~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~ 127 (136)
T cd08406 91 ESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRK 127 (136)
T ss_pred eCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCC
Confidence 9999999999999999887777777888887654443
No 65
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.69 E-value=3.7e-16 Score=130.55 Aligned_cols=92 Identities=18% Similarity=0.355 Sum_probs=82.4
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEec--CCCcEEEEEEEEcCCCCC
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIWK 88 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~--~~~~~L~~~V~D~d~~~~ 88 (362)
...+.|.|+|++|++|+ .+..|.+||||+|.+++...+|+++++++||.|||+|.|... +..+.|.|+|||++..++
T Consensus 25 ~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~ 103 (127)
T cd04032 25 RGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWD 103 (127)
T ss_pred CCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCC
Confidence 34689999999999997 477889999999999988999999999999999999999753 346789999999999999
Q ss_pred CceeEEEEEEeccCC
Q 018029 89 STVLGSVIVTVESEG 103 (362)
Q Consensus 89 ddfIG~~~i~L~~l~ 103 (362)
+++||++.++|....
T Consensus 104 dd~IG~~~i~l~~~~ 118 (127)
T cd04032 104 DDLLGTCSVVPEAGV 118 (127)
T ss_pred CCeeEEEEEEecCCc
Confidence 999999999998653
No 66
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.68 E-value=2.7e-16 Score=137.11 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=90.1
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY 81 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~~L~~~V~ 81 (362)
.+.+.|.|+|++|++|+..+..|.+||||++.+ +...++|+++.++.||.|||.|.|.... ....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 367999999999999999999999999999987 2456799999999999999999998532 2457999999
Q ss_pred EcCCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029 82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~ 114 (362)
|++..+++++||++.+++.++ .+..+.|+.|.+
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999998999999999999987 455688888854
No 67
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.2e-16 Score=134.74 Aligned_cols=98 Identities=21% Similarity=0.349 Sum_probs=85.0
Q ss_pred EEEEEEeeecCCCCCCCC--------------CCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEec--CCCcEEEEE
Q 018029 16 IKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVT 79 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g--------------~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~--~~~~~L~~~ 79 (362)
|.|+|++|++|+.+|..+ .+||||++.+++.+.+|+++++++||.|||+|.|.+. ...+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999998554 6899999999999999999999999999999999875 335689999
Q ss_pred EEEcCCCCCCceeEEEEEEeccC-CCcc--------eEEEEcc
Q 018029 80 IYDWDIIWKSTVLGSVIVTVESE-GQTG--------AVWYTLD 113 (362)
Q Consensus 80 V~D~d~~~~ddfIG~~~i~L~~l-~~~~--------~~w~~L~ 113 (362)
|||+|..+++++||++.+++.++ .... ..|+.|.
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 99999999999999999999987 3333 3666664
No 68
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=4.6e-16 Score=127.41 Aligned_cols=103 Identities=26% Similarity=0.475 Sum_probs=91.0
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECC-eeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~ddfIG 93 (362)
|+|+|++|++|+..+..+.+||||++.++. ...+|+++.++.+|.|+|+|.|.+.+ ..+.+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999999889999999999964 45699999999999999999999975 4678999999999988999999
Q ss_pred EEEEEeccC--CCcceEEEEccCCCCe
Q 018029 94 SVIVTVESE--GQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 94 ~~~i~L~~l--~~~~~~w~~L~~~~G~ 118 (362)
++.+++.++ +...+.|++|.+++|.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 999999997 4567899999875554
No 69
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.68 E-value=9.9e-17 Score=135.62 Aligned_cols=110 Identities=27% Similarity=0.421 Sum_probs=93.8
Q ss_pred CCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEE
Q 018029 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI 80 (362)
Q Consensus 9 ~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V 80 (362)
+.+..+.|.|+|++|++|+.++..|.+||||++.+. . ..++|+++++++||.|+|+|.|.+... ...|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 446678999999999999999999999999999983 2 345899999999999999999998632 34799999
Q ss_pred EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
||++..+++++||++.+++...+....+|+++....++
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~ 127 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRR 127 (136)
T ss_pred EeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCC
Confidence 99999999999999999998877777888888654443
No 70
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.68 E-value=8e-17 Score=120.27 Aligned_cols=66 Identities=30% Similarity=0.651 Sum_probs=48.8
Q ss_pred ccceeeccCCCcceeeeehhhhhh-ccccceeEEEecceEEEeecCCCcee-EEEeecccceEEEEec
Q 018029 164 PLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ 229 (362)
Q Consensus 164 ~f~~~F~lp~~E~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~S~~~g~~~-k~~ip~~di~~i~k~~ 229 (362)
.|++.|+||.+|.|+.+|.|++++ .++.+|+||+|.+++||+|+.++..+ +++|||.||.+|+|++
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 589999999999999999999999 99999999999999999999999888 9999999999999974
No 71
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.67 E-value=2.9e-17 Score=157.26 Aligned_cols=102 Identities=25% Similarity=0.503 Sum_probs=92.7
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEecC--CCcEEEEEEEEcCC
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI 85 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v~~--~~~~L~~~V~D~d~ 85 (362)
...|.|+|.+|+||.+||.+|.|||||.+++ +..+++|++++.++||+|||+|.|.+.+ .+++|.++|||||.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 4678899999999999999999999999998 2456799999999999999999999964 47789999999999
Q ss_pred CCCCceeEEEEEEeccC-CCcceEEEEccC
Q 018029 86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS 114 (362)
Q Consensus 86 ~~~ddfIG~~~i~L~~l-~~~~~~w~~L~~ 114 (362)
.+++||+|...+.++++ ....+.||.|.+
T Consensus 259 TsRNDFMGslSFgisEl~K~p~~GWyKlLs 288 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAPVDGWYKLLS 288 (683)
T ss_pred cccccccceecccHHHHhhcchhhHHHHhh
Confidence 99999999999999998 677899999975
No 72
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.66 E-value=5.5e-16 Score=131.42 Aligned_cols=99 Identities=20% Similarity=0.411 Sum_probs=88.1
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEC----CeeEeeccccCCCCCeeccEEEEEecCC----------------CcE
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ 75 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~----~~~~rT~~i~~t~nP~W~e~f~f~v~~~----------------~~~ 75 (362)
|.|+|++|++|+.+ ..|.+||||.++++ ...++|+++.++.+|.|+|.|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999998 78999999999997 6778999999999999999999998643 457
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029 76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (362)
Q Consensus 76 L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~ 115 (362)
|.|+|||++..++++|||++.+++.++ ......|++|.++
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999888899999999999997 4457899999864
No 73
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.66 E-value=1.7e-16 Score=134.52 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=89.2
Q ss_pred CCceeEEEEEEEeeecCCCCCC--CCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEE
Q 018029 10 TNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT 79 (362)
Q Consensus 10 ~~~~~~L~V~Vi~A~~L~~~d~--~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~ 79 (362)
.+..+.|.|+|++|+||+.+|. .+.+||||++++.. .+++|+++++++||+|||.|.|.++. ....|.|+
T Consensus 11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 3566889999999999999983 35599999999842 35589999999999999999999974 25679999
Q ss_pred EEEcCCCCCCceeEEEEEEeccCCCcceEEEEccC
Q 018029 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS 114 (362)
Q Consensus 80 V~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~ 114 (362)
|||+|..+++++||++.+++...+...++|..+..
T Consensus 91 V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~ 125 (138)
T cd08407 91 VLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLD 125 (138)
T ss_pred EEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHh
Confidence 99999999999999999999887777778877654
No 74
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=3e-16 Score=132.72 Aligned_cols=108 Identities=26% Similarity=0.410 Sum_probs=92.4
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD 82 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D 82 (362)
+..+.|.|+|++|++|+.++..|.+||||++.+. ....+|+++.++.||.|||.|.|.+.. ....|.|+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 4568899999999999999999999999999882 234689999999999999999999862 24579999999
Q ss_pred cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
++..+++++||++.+++.+.+...++|+.+....|+
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~ 127 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQ 127 (136)
T ss_pred CCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCC
Confidence 999999999999999999887777788887654444
No 75
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.65 E-value=2.6e-15 Score=123.14 Aligned_cols=105 Identities=29% Similarity=0.437 Sum_probs=85.6
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCce
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTV 91 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~ddf 91 (362)
|.|+|++|++|+.. |.+||||.+++++.. .+|+++.+ .||.|||+|.|.+.+ ....|.+.+||.+...++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 68999999999876 789999999998754 69999988 999999999999975 23568888899887666778
Q ss_pred eEEEEEEeccCCCcceEEEEccCC------CCeeEEEEE
Q 018029 92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK 124 (362)
Q Consensus 92 IG~~~i~L~~l~~~~~~w~~L~~~------~G~i~l~l~ 124 (362)
+|.+.+.....++..+.|++|.+. .|++++.+.
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 116 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR 116 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence 888776666667778999999863 467766654
No 76
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.65 E-value=5.3e-16 Score=130.85 Aligned_cols=109 Identities=23% Similarity=0.407 Sum_probs=92.5
Q ss_pred CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 018029 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY 81 (362)
Q Consensus 10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~ 81 (362)
.+..+.|.|+|++|++|++++..|.+||||++.+. + ...+|+++.+++||.|+|.|.|.+... ...|.|+||
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~ 89 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVV 89 (134)
T ss_pred cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 35568999999999999999999999999999983 1 356899999999999999999998632 346999999
Q ss_pred EcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
|++..+++++||++.+++...+.+...|+.+....|+
T Consensus 90 d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~ 126 (134)
T cd08403 90 DYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRK 126 (134)
T ss_pred ECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCC
Confidence 9999999999999999988766667789888655554
No 77
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.65 E-value=6.3e-16 Score=130.72 Aligned_cols=109 Identities=22% Similarity=0.436 Sum_probs=90.9
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecC--C-CcEEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD 82 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~--~-~~~L~~~V~D 82 (362)
+..+.|.|+|++|++|+.+|..|.+||||.+.+. . ..++|++++++.||.|||+|.|.+.. . ...|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 4568899999999999999999999999999972 1 34689999999999999999999863 2 3469999999
Q ss_pred cCCCCCCceeEEEEEEeccCCC-cceEEEEccCCCCee
Q 018029 83 WDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQV 119 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l~~-~~~~w~~L~~~~G~i 119 (362)
+|..+++++||++.+.....++ ..++|+.|....|+.
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTA 128 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCE
Confidence 9999999999999877665544 467899987765654
No 78
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.64 E-value=1.3e-15 Score=128.44 Aligned_cols=92 Identities=22% Similarity=0.419 Sum_probs=82.2
Q ss_pred ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-------CeeEeeccccCCCCCeeccEEEEEecC-----CCcEEEEE
Q 018029 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVT 79 (362)
Q Consensus 12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-------~~~~rT~~i~~t~nP~W~e~f~f~v~~-----~~~~L~~~ 79 (362)
..+.|.|+|++|++|+.++..|.+||||++.+. ...++|+++.+++||.|||+|.|.+.. ....|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 457899999999999999989999999999984 346799999999999999999999864 24579999
Q ss_pred EEEcCCCCCCceeEEEEEEeccCC
Q 018029 80 IYDWDIIWKSTVLGSVIVTVESEG 103 (362)
Q Consensus 80 V~D~d~~~~ddfIG~~~i~L~~l~ 103 (362)
|||++..+++++||++.++|.++.
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCC
Confidence 999999988999999999999874
No 79
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.64 E-value=1.5e-15 Score=125.70 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=83.2
Q ss_pred EEEeeecCCCCCCCCCCCcEEEEEECCe-------eEeeccccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCC----C
Q 018029 19 ELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----I 86 (362)
Q Consensus 19 ~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-------~~rT~~i~~t~nP~W~e~f~f~v~-~~~~~L~~~V~D~d~----~ 86 (362)
-.++|++|+.++..|.+||||++.+... ..+|+++.+++||.|+|+|.|.+. +..+.|.|+|||+|. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3488999999999999999999999644 379999999999999999999865 446679999999997 7
Q ss_pred CCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029 87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (362)
Q Consensus 87 ~~ddfIG~~~i~L~~l--~~~~~~w~~L~~ 114 (362)
+++++||++.+++.++ ......|+.|.+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 8999999999999998 456678888854
No 80
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.64 E-value=1.5e-15 Score=127.44 Aligned_cols=105 Identities=27% Similarity=0.493 Sum_probs=92.1
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC--CcEEEEEEEEcCCC
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDII 86 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~--~~~L~~~V~D~d~~ 86 (362)
+.|.|+|++|++|+..+..+.+||||.+.+. ....+|+++.++.+|.|+|+|.|.+.+. .+.|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 7899999999999999888999999999985 3567999999999999999999998743 56799999999988
Q ss_pred CCCceeEEEEEEeccC-CCcceEEEEccC-CCCe
Q 018029 87 WKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ 118 (362)
Q Consensus 87 ~~ddfIG~~~i~L~~l-~~~~~~w~~L~~-~~G~ 118 (362)
+++++||++.+++.++ ......||+|.. +.|+
T Consensus 93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~ 126 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE 126 (131)
T ss_pred CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence 8999999999999998 446788999975 4454
No 81
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.63 E-value=5.2e-15 Score=125.27 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=83.3
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEEC-------------CeeEeeccccCCCCCee-ccEEEEEecCCCcEEEEEE
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-------------SEKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI 80 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-------------~~~~rT~~i~~t~nP~W-~e~f~f~v~~~~~~L~~~V 80 (362)
++.|++++|++|+ ++..|++||||++++. .+.++|+++.+++||.| ||.|.|.+.. .+.|.++|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 5789999999998 7889999999999983 13679999999999999 9999999864 56899999
Q ss_pred EEcCCCCC---CceeEEEEEEeccCC-----CcceEEEEccCC
Q 018029 81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP 115 (362)
Q Consensus 81 ~D~d~~~~---ddfIG~~~i~L~~l~-----~~~~~w~~L~~~ 115 (362)
||++..++ +++||++.+++.++. .....|++|...
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 99875443 699999999999972 235679999853
No 82
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=2.9e-15 Score=124.81 Aligned_cols=89 Identities=24% Similarity=0.492 Sum_probs=80.0
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECCee--EeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV 91 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~--~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~ddf 91 (362)
+++|.|++|++|+.+|..|.+||||++.++... .+|+++.+++||.|||+|.|.+.. ....|.|+|||+|..+++++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 478999999999999999999999999998654 478888999999999999998863 36789999999999999999
Q ss_pred eEEEEEEeccCC
Q 018029 92 LGSVIVTVESEG 103 (362)
Q Consensus 92 IG~~~i~L~~l~ 103 (362)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999864
No 83
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.63 E-value=1.5e-15 Score=127.49 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=88.6
Q ss_pred CCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCC-CCeeccEEEEEecCC--CcEEEEEE
Q 018029 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDEL--PVQIIVTI 80 (362)
Q Consensus 9 ~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~-nP~W~e~f~f~v~~~--~~~L~~~V 80 (362)
+.++.+.|+|+|++|++|++++..+.+||||++++- ..+++|+++++++ +|.|||+|.|++... ...|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 457789999999999999998667778999999982 2466999999995 699999999999743 44688999
Q ss_pred EEcCCCCCCceeEEEEEEeccC-CCcceEEEEccC
Q 018029 81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLDS 114 (362)
Q Consensus 81 ~D~d~~~~ddfIG~~~i~L~~l-~~~~~~w~~L~~ 114 (362)
||++..+++++||++.+..... +.+.++|.+...
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~ 123 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIA 123 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCchhhhhHHHHHh
Confidence 9999988999999999999875 445788888654
No 84
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.62 E-value=1.3e-14 Score=124.95 Aligned_cols=113 Identities=13% Similarity=0.164 Sum_probs=90.8
Q ss_pred EEEEEeeec--CCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEecCC---------CcEEEEEE
Q 018029 17 KLELLAAKN--LIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVTI 80 (362)
Q Consensus 17 ~V~Vi~A~~--L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v~~~---------~~~L~~~V 80 (362)
.++|..|++ |+..+..+.+||||.+++ +.++.+|+++++|+||.|||+|.|.+... ...|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 455555555 778888889999999987 24577999999999999999999999643 34599999
Q ss_pred EEcCCC-CCCceeEEEEEEeccC--CCcceEEEEccC----CCCeeEEEEEEeecc
Q 018029 81 YDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTIKLP 129 (362)
Q Consensus 81 ~D~d~~-~~ddfIG~~~i~L~~l--~~~~~~w~~L~~----~~G~i~l~l~~~~~~ 129 (362)
||.+.+ .+|++||++.++|+.+ ......|++|.. -+|++++.+++....
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~ 140 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREPL 140 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCCC
Confidence 999986 4799999999999998 455677999862 358888888766543
No 85
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.62 E-value=9.9e-16 Score=128.61 Aligned_cols=108 Identities=26% Similarity=0.446 Sum_probs=93.9
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D 82 (362)
+..+.|.|+|++|++|+..+..+.+||||.+.+.. ...+|+++.++.+|.|+|+|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 44578999999999999999899999999999843 245999999999999999999998753 4679999999
Q ss_pred cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
.+..+++++||.+.+++++.+...++|+.|....|+
T Consensus 91 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK 126 (134)
T ss_pred cCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCC
Confidence 998888999999999999976778899999865454
No 86
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=1.4e-15 Score=129.06 Aligned_cols=111 Identities=20% Similarity=0.337 Sum_probs=93.5
Q ss_pred CCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---C---eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEE
Q 018029 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT 79 (362)
Q Consensus 9 ~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~---~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~ 79 (362)
+....+.|.|+|++|+||++++..|.+||||++.+. + .+++|++.+++.||.|||+|.|.+.. ....|.|+
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 445678999999999999999999999999999983 1 24599999999999999999999973 34679999
Q ss_pred EEEcCCCCCCceeEEEEEEeccCCC-cceEEEEccCCCCee
Q 018029 80 IYDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQV 119 (362)
Q Consensus 80 V~D~d~~~~ddfIG~~~i~L~~l~~-~~~~w~~L~~~~G~i 119 (362)
|||++..+++++||++.+++...+. ..++|+.+....++.
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQ 130 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCE
Confidence 9999999999999999999887753 457899886544543
No 87
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.61 E-value=1.3e-14 Score=120.97 Aligned_cols=98 Identities=15% Similarity=0.263 Sum_probs=83.5
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI 92 (362)
..|.|+|++|+ |...+..+.+||||.+.++.. ..+|+++.++.+|.|+|.|.|.+.+ .+.|.|+|||++..+.+++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence 36899999998 656666889999999999876 7899999999999999999999864 67899999999999899999
Q ss_pred EEEEEEeccCC--C---c--ceEEEEcc
Q 018029 93 GSVIVTVESEG--Q---T--GAVWYTLD 113 (362)
Q Consensus 93 G~~~i~L~~l~--~---~--~~~w~~L~ 113 (362)
|++.++|.++. . . ...|+.|.
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~ 107 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLS 107 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEE
Confidence 99999999862 1 1 23478885
No 88
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=1.3e-14 Score=120.35 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=85.1
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEe-cC---CCcEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIY 81 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v-~~---~~~~L~~~V~ 81 (362)
+..+.|.|+|++|++|+..+..+.+||||++.+. ....+|++++++.||.|++.|.|.. .. ....|.|+||
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 4458899999999999999988999999999972 3467999999999999999999963 32 2468999999
Q ss_pred EcCCCCCCceeEEEEEEeccCCCcceEEEEc
Q 018029 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTL 112 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L 112 (362)
|++.. .+++||++.++++++......|+.+
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence 99988 8899999999999996655555543
No 89
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.60 E-value=2.5e-14 Score=122.03 Aligned_cols=99 Identities=23% Similarity=0.285 Sum_probs=84.7
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeE-eeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC--
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW-- 87 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~-rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~-- 87 (362)
.....|.|.|++|++|+.++ +|||.+.+++... ||+++.++.||.|+|.|.|........+.|.||+.+...
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence 34577999999999998865 7999999998875 999999999999999999987766678999999765322
Q ss_pred --CCceeEEEEEEeccC--CCcceEEEEccC
Q 018029 88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (362)
Q Consensus 88 --~ddfIG~~~i~L~~l--~~~~~~w~~L~~ 114 (362)
++++||.+.|++.++ +...+.||+|.+
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~ 113 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVST 113 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence 578999999999998 556789999974
No 90
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.58 E-value=1e-14 Score=118.59 Aligned_cols=94 Identities=21% Similarity=0.368 Sum_probs=79.1
Q ss_pred EEEEeeecCCCCCCCCCCCcEEEEEECCe------eEeeccccCCCCCeeccEEEEEecC-----CCcEEEEEEEEcCCC
Q 018029 18 LELLAAKNLIGANLNGTSDPYAIITCGSE------KRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVTIYDWDII 86 (362)
Q Consensus 18 V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~------~~rT~~i~~t~nP~W~e~f~f~v~~-----~~~~L~~~V~D~d~~ 86 (362)
+-.++|++|+.+|..|.+||||++++... .++|+++++++||.|+ +|.|.+.+ ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 45679999999999999999999997432 4799999999999999 78887642 257899999999999
Q ss_pred CCCceeEEEEEEeccCCCcceEEEEc
Q 018029 87 WKSTVLGSVIVTVESEGQTGAVWYTL 112 (362)
Q Consensus 87 ~~ddfIG~~~i~L~~l~~~~~~w~~L 112 (362)
+++++||++.+++.++...+..++.+
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~~~ 108 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEFEL 108 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence 99999999999999986555555554
No 91
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4.7e-15 Score=147.42 Aligned_cols=114 Identities=31% Similarity=0.522 Sum_probs=103.2
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC------
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII------ 86 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~------ 86 (362)
...++++|+.|.+|..+|..|++||||...+++.++||+++...+||+|+|.|.|++++...++++.|||.|+.
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999889999999998853
Q ss_pred -----CCCceeEEEEEEeccCCCcceEEEEccCC------CCeeEEEEEEe
Q 018029 87 -----WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTI 126 (362)
Q Consensus 87 -----~~ddfIG~~~i~L~~l~~~~~~w~~L~~~------~G~i~l~l~~~ 126 (362)
-.|||+|++.|.+..+.+..+.||.|+.+ +|.|+++|.++
T Consensus 374 qkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEE
Confidence 24899999999999999999999999852 48888877765
No 92
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=2.6e-14 Score=116.66 Aligned_cols=96 Identities=20% Similarity=0.330 Sum_probs=82.1
Q ss_pred CCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEeccC---CCc
Q 018029 31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT 105 (362)
Q Consensus 31 ~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l---~~~ 105 (362)
.+|.+||||++.++++ ..+|+++.++.||.|||.|.|.+.+. ...|.|+|||++.. ++++||.+.++|.++ ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 4788999999999875 56999999999999999999999764 56799999999988 899999999999986 234
Q ss_pred ceEEEEccC-CCCeeEEEEEEee
Q 018029 106 GAVWYTLDS-PSGQVCLHIKTIK 127 (362)
Q Consensus 106 ~~~w~~L~~-~~G~i~l~l~~~~ 127 (362)
...|++|.+ +.|++++++.+.+
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 579999973 4689988887764
No 93
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.57 E-value=6.9e-15 Score=124.67 Aligned_cols=104 Identities=19% Similarity=0.312 Sum_probs=87.1
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecC--C-CcEEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD 82 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~--~-~~~L~~~V~D 82 (362)
+..+.|.|+|++|+||+..+ .+.+||||++.+.. .+++|++++++.||.|||.|.|.+.. . ...|.|+|||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 45688999999999999998 88899999999742 35589999999999999999999963 2 3579999999
Q ss_pred cCCCCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~ 115 (362)
++..+++++||++.+..... +...++|..+...
T Consensus 91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred CCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 99988999999999986543 4556778887643
No 94
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.56 E-value=9e-14 Score=115.74 Aligned_cols=102 Identities=22% Similarity=0.338 Sum_probs=85.7
Q ss_pred eEEEEEEEeeecCCCCC--CCCCCCcEEEEEE------CCeeEeeccccCCC-CCeeccEEEEEecCC-CcEEEEEEEEc
Q 018029 14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITC------GSEKRFSSMVPGSR-YPMWGEEFNFSVDEL-PVQIIVTIYDW 83 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d--~~g~sDPyv~i~l------~~~~~rT~~i~~t~-nP~W~e~f~f~v~~~-~~~L~~~V~D~ 83 (362)
..|+|+|++|++|+.++ ..+.+||||++++ .....+|+++.++. ||.|+|+|.|.+... ...|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46899999999999988 5789999999998 34567999988775 999999999998754 35699999999
Q ss_pred CCCCCCceeEEEEEEeccCCCcceEEEEccCCCC
Q 018029 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG 117 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G 117 (362)
+.. ++++||++.+++.++..+ ..|++|..+.|
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g-~~~~~l~~~~~ 113 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQG-YRHVPLLDSKG 113 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCc-eEEEEecCCCC
Confidence 987 899999999999998543 57889875443
No 95
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.56 E-value=4.5e-15 Score=107.99 Aligned_cols=60 Identities=35% Similarity=0.682 Sum_probs=57.0
Q ss_pred ccCCCcceeeeehhhhhhccccceeEEEecceEEEeecCCCcee-EEEeecccceEEEEec
Q 018029 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ 229 (362)
Q Consensus 170 ~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~S~~~g~~~-k~~ip~~di~~i~k~~ 229 (362)
+||++|.|+.+|.|+|++.++++|+||+|++++||+|+.+|+.+ +++||+.||..|+|.+
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~~ 61 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKST 61 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEECC
Confidence 37899999999999999999999999999999999999999999 9999999999999963
No 96
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.55 E-value=4.2e-14 Score=115.76 Aligned_cols=80 Identities=15% Similarity=0.336 Sum_probs=70.0
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEc-------
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW------- 83 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~------- 83 (362)
|.|+|.+|++|+ +.+||||.+.++. .+.+|+++.+|+||.|||+|.|++.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 579999999995 4699999998852 45799999999999999999999974 77999999998
Q ss_pred CCCCCCceeEEEEEEecc
Q 018029 84 DIIWKSTVLGSVIVTVES 101 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~ 101 (362)
|..++|+++|.+.+.|..
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 466789999999999875
No 97
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=9.3e-14 Score=138.22 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=123.4
Q ss_pred ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCC
Q 018029 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI 85 (362)
Q Consensus 12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~ 85 (362)
....|.|+|++|++|+.+|..|.+||||.+++- +.+.+|++.++++||.|||+|.|.+.. ..+.|.++|||+|.
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 457789999999999999977889999999993 466799999999999999999999752 36789999999999
Q ss_pred CCCCceeEEEEEEeccCC--CcceEEEEccCC-------CCeeEEEEEEeeccccccccccccccchhhhccccccCCCc
Q 018029 86 IWKSTVLGSVIVTVESEG--QTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPT 156 (362)
Q Consensus 86 ~~~ddfIG~~~i~L~~l~--~~~~~w~~L~~~-------~G~i~l~l~~~~~~~~~~~~~~~~~~~~~r~r~~~~kl~~k 156 (362)
++++++||++.++|..+. .....|.+|.+. .|++.+.+.|.+....-. .. -+.+..+...
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~lt---v~--------v~kar~L~~~ 313 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLT---VV--------VIKARNLKSM 313 (421)
T ss_pred cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEE---EE--------EEEecCCCcc
Confidence 999999999999998873 345789999752 268888888876632211 00 1122344455
Q ss_pred eeeccccccceeeccCCCcceeeeehhh
Q 018029 157 VVHQKPGPLQTIFNLLPDEFVELSYSCV 184 (362)
Q Consensus 157 ~~~~k~~~f~~~F~lp~~E~l~~~~~c~ 184 (362)
+....+++|-+...++.+..+...-.+.
T Consensus 314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~ 341 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTLLDGDKRLSKKKTSV 341 (421)
T ss_pred cCCCCCCccEEEEEecCCceeeeeeeec
Confidence 5566777888888777775554444433
No 98
>PLN03008 Phospholipase D delta
Probab=99.55 E-value=4.7e-14 Score=146.69 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=98.2
Q ss_pred eeEEEEEEEeeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eEe
Q 018029 13 AYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSE-KRF 49 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~------------------------------------------~g~sDPyv~i~l~~~-~~r 49 (362)
.|.|.++|.+|++|+.+|. .++|||||+|.++.. ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 5889999999999986432 246899999999865 459
Q ss_pred eccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccC-------CCCeeE
Q 018029 50 SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS-------PSGQVC 120 (362)
Q Consensus 50 T~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~-------~~G~i~ 120 (362)
|+++.+++||+|||+|.|.+.+....|.|+|||+|.++ +++||++.+++.++ +...+.|++|.. ..|+++
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~ 171 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIF 171 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEE
Confidence 99999999999999999999887789999999999986 58999999999998 556789999963 235777
Q ss_pred EEEEEeecccc
Q 018029 121 LHIKTIKLPVN 131 (362)
Q Consensus 121 l~l~~~~~~~~ 131 (362)
+++.+.+....
T Consensus 172 v~lqf~pv~~~ 182 (868)
T PLN03008 172 IDMKFTPFDQI 182 (868)
T ss_pred EEEEEEEcccc
Confidence 77777765443
No 99
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.53 E-value=3.5e-14 Score=159.70 Aligned_cols=111 Identities=21% Similarity=0.340 Sum_probs=97.7
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCC--cEEEEEEEEcCCCCCC
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELP--VQIIVTIYDWDIIWKS 89 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~--~~L~~~V~D~d~~~~d 89 (362)
.|.|.|+|++|+||. +..|.+||||++.++++ +.+|++++++.||.|||+|.|.+.+++ ++|+++|||+|.+++|
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd 2056 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS 2056 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC
Confidence 699999999999998 44789999999999966 779999999999999999998887654 7899999999998555
Q ss_pred ceeEEEEEEeccC--CCcceEEEEccC---CCCe---eEEEEEEe
Q 018029 90 TVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI 126 (362)
Q Consensus 90 dfIG~~~i~L~~l--~~~~~~w~~L~~---~~G~---i~l~l~~~ 126 (362)
.+|.+++++.++ ++....||+|.+ ++|+ +.+++.|.
T Consensus 2057 -~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2057 -SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred -CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 999999999997 677889999984 6788 77777764
No 100
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.43 E-value=1.1e-12 Score=100.22 Aligned_cols=81 Identities=26% Similarity=0.491 Sum_probs=72.8
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECC---eeEeeccccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCCCCCCce
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWKSTV 91 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~---~~~rT~~i~~t~nP~W~e~f~f~v~-~~~~~L~~~V~D~d~~~~ddf 91 (362)
|.|+|++|++|+..+..+.+||||.+.+.. ...+|+++.++.+|.|+++|.|.+. .....|.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 689999999999988888999999999965 5689999999999999999999975 445569999999999988999
Q ss_pred eEEEE
Q 018029 92 LGSVI 96 (362)
Q Consensus 92 IG~~~ 96 (362)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 101
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.32 E-value=3.9e-12 Score=128.34 Aligned_cols=115 Identities=23% Similarity=0.369 Sum_probs=101.9
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI 92 (362)
.-|.|+|.+|+||++.+..|.+||||.|.++.+ ..||.++.+++.|-|.|+|.|+++..-+.|.|.|||.| ++.|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 458899999999999999999999999999865 56999999999999999999999987889999999999 8999999
Q ss_pred EEEEEEeccC--CCcceEEEEccC------CCCeeEEEEEEeecc
Q 018029 93 GSVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKLP 129 (362)
Q Consensus 93 G~~~i~L~~l--~~~~~~w~~L~~------~~G~i~l~l~~~~~~ 129 (362)
|.+.+.=+++ -++.+.|+.|.+ -.|++|+++.+...-
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecccc
Confidence 9999998887 457899999974 248898888766543
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.31 E-value=2.3e-11 Score=94.54 Aligned_cols=97 Identities=30% Similarity=0.574 Sum_probs=84.8
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECC-eeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG 93 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~ddfIG 93 (362)
|.|.+++|++|......+..+|||.+.+.. ...+|++..++.+|.|++.|.|.+.. ....|.++|||.+..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998877778899999999987 78899999999999999999999987 6778999999999887789999
Q ss_pred EEEEEeccCC---CcceEEEEc
Q 018029 94 SVIVTVESEG---QTGAVWYTL 112 (362)
Q Consensus 94 ~~~i~L~~l~---~~~~~w~~L 112 (362)
.+.+++..+. .....|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999874 455667654
No 103
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.26 E-value=6.7e-11 Score=92.44 Aligned_cols=88 Identities=24% Similarity=0.505 Sum_probs=78.7
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECCe---eEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCce
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV 91 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~---~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddf 91 (362)
+.|.|++|++|......+..+|||.+.+... ..+|+++.++.+|.|+++|.|.+... ...|.|+|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6799999999998876678999999999764 68999999999999999999999876 7889999999998777899
Q ss_pred eEEEEEEeccCC
Q 018029 92 LGSVIVTVESEG 103 (362)
Q Consensus 92 IG~~~i~L~~l~ 103 (362)
+|.+.+++.++.
T Consensus 82 ~G~~~~~l~~~~ 93 (101)
T smart00239 82 IGQVTIPLSDLL 93 (101)
T ss_pred eEEEEEEHHHcc
Confidence 999999998873
No 104
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.16 E-value=2.4e-10 Score=95.98 Aligned_cols=87 Identities=18% Similarity=0.282 Sum_probs=74.0
Q ss_pred EEEEEEeeecCCCC--CCCCC--CCcEEEEEEC---CeeEeeccccCCCC--CeeccEEEEEecC---------------
Q 018029 16 IKLELLAAKNLIGA--NLNGT--SDPYAIITCG---SEKRFSSMVPGSRY--PMWGEEFNFSVDE--------------- 71 (362)
Q Consensus 16 L~V~Vi~A~~L~~~--d~~g~--sDPyv~i~l~---~~~~rT~~i~~t~n--P~W~e~f~f~v~~--------------- 71 (362)
|+|.|.+|++++.. +..|. +||||+..+. ..+++|.+..+++| |.||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 78999999996543 44664 9999999985 45679999999999 9999999987653
Q ss_pred ---------CCcEEEEEEEEcCCCCCCceeEEEEEEeccC
Q 018029 72 ---------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (362)
Q Consensus 72 ---------~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l 102 (362)
....|.++|||.|.+++|++||+++++|..+
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l 121 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSIL 121 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhc
Confidence 1345999999999999999999999999987
No 105
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.2e-10 Score=116.11 Aligned_cols=102 Identities=25% Similarity=0.434 Sum_probs=84.7
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD 82 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D 82 (362)
+..|.|+|.|++|++|+.++..+.+||||++.+- ..+++|.+.++++||.|||+|.|.++.. ...|.++|||
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d 374 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD 374 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence 4579999999999999999999999999999972 3455899999999999999999988732 3469999999
Q ss_pred cCCCCCCceeEEEEEEeccCCCcceEEEEc
Q 018029 83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTL 112 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L 112 (362)
+|.++.+++||.+.+....-+....+|...
T Consensus 375 ~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m 404 (421)
T KOG1028|consen 375 HDTLGSNDLIGRCILGSDSTGEEVRHWQEM 404 (421)
T ss_pred cccccccceeeEEEecCCCCchHHHHHHHH
Confidence 999999999998888776533334455544
No 106
>PLN02223 phosphoinositide phospholipase C
Probab=99.14 E-value=3.7e-10 Score=113.54 Aligned_cols=105 Identities=18% Similarity=0.273 Sum_probs=84.6
Q ss_pred eeEEEEEEEeeecCCC-----CCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEE
Q 018029 13 AYLIKLELLAAKNLIG-----ANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIY 81 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~-----~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~ 81 (362)
...|.|+|++|.+++. .+.....||||.|.+. ...++|.+..++.||.|||+|.|.+..+ -..|+|+||
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998741 1234568999999983 3455787777899999999999998754 456999999
Q ss_pred EcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
|+|..++++|+|++.+|+..+..+ -++++|..+.|+
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~ 523 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGK 523 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcC
Confidence 999888899999999999999665 367788776665
No 107
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.08 E-value=2.4e-11 Score=122.71 Aligned_cols=120 Identities=27% Similarity=0.464 Sum_probs=97.1
Q ss_pred CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC------C-------------------------eeEeeccccCCCC
Q 018029 10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------S-------------------------EKRFSSMVPGSRY 58 (362)
Q Consensus 10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~------~-------------------------~~~rT~~i~~t~n 58 (362)
.++.+.+.|.+.+|++|..+|.+|.||||+.+.+- + -.+-|++.+.|+|
T Consensus 110 k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLn 189 (1103)
T KOG1328|consen 110 KPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLN 189 (1103)
T ss_pred CCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCC
Confidence 34567788889999999999999999999998761 0 0135788889999
Q ss_pred CeeccEEEEEecCC-CcEEEEEEEEcCCC---------------------------------C---CCceeEEEEEEecc
Q 018029 59 PMWGEEFNFSVDEL-PVQIIVTIYDWDII---------------------------------W---KSTVLGSVIVTVES 101 (362)
Q Consensus 59 P~W~e~f~f~v~~~-~~~L~~~V~D~d~~---------------------------------~---~ddfIG~~~i~L~~ 101 (362)
|+|+|.|.|.+.+. ..++.+.+||+|.. + .|||+|++.++|.+
T Consensus 190 PkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 190 PKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred cchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 99999999999864 55799999999821 2 27999999999999
Q ss_pred C-CCcceEEEEccCCC------CeeEEEEEEeecc
Q 018029 102 E-GQTGAVWYTLDSPS------GQVCLHIKTIKLP 129 (362)
Q Consensus 102 l-~~~~~~w~~L~~~~------G~i~l~l~~~~~~ 129 (362)
+ ..+.++||+|++++ |++++.+.+....
T Consensus 270 iP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 270 IPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred CCcchHHHHhccCcccccccccceEEEEEEEeeec
Confidence 9 66789999999743 7788877765544
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=99.06 E-value=1.4e-09 Score=111.47 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=85.0
Q ss_pred eeEEEEEEEeeecCCCC------CCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 018029 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI 80 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~------d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V 80 (362)
...|.|+|++|.+|+.. +.....||||.+.+- ..+.+|+++.++.||.|+++|.|.+..+ -.-|+|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46799999999887421 223346999999983 4566999999999999999999988753 45699999
Q ss_pred EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
||+|..+.++|+|++.+++..+..+. +|++|..+.|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy-R~VpL~~~~G~ 585 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI-RSVPLHDKKGE 585 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc-eeEeCcCCCCC
Confidence 99999888999999999999997664 59999765554
No 109
>PLN02270 phospholipase D alpha
Probab=99.02 E-value=3.3e-09 Score=110.93 Aligned_cols=116 Identities=19% Similarity=0.334 Sum_probs=93.9
Q ss_pred eeEEEEEEEeeecCCCCC------------------CCCCCCcEEEEEECCee-EeeccccCC-CCCeeccEEEEEecCC
Q 018029 13 AYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSEK-RFSSMVPGS-RYPMWGEEFNFSVDEL 72 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d------------------~~g~sDPyv~i~l~~~~-~rT~~i~~t-~nP~W~e~f~f~v~~~ 72 (362)
.|.|.|+|++|++|+.++ ..+.+||||.|.+++.. .||+++.+. .||.|+|.|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 588999999999998631 13568999999997655 499999885 6999999999999988
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccCCC-----C--eeEEEEEEeecc
Q 018029 73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----G--QVCLHIKTIKLP 129 (362)
Q Consensus 73 ~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~~-----G--~i~l~l~~~~~~ 129 (362)
...+.|+|.|.|.++. .+||.+.+++.++ +...+.|+++.... + ++++.+.+....
T Consensus 87 ~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 8999999999998854 5999999999998 55688999996422 2 456666655543
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.01 E-value=9.6e-10 Score=116.87 Aligned_cols=104 Identities=22% Similarity=0.355 Sum_probs=90.0
Q ss_pred ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCC
Q 018029 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKS 89 (362)
Q Consensus 12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~d 89 (362)
+.|.|.|.+.+|.||+..|.+|.+||||++.+... .++|.++++++||.|||+|.+++.. ....+.+-|+|||...++
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~kn 1117 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKN 1117 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCc
Confidence 46889999999999999999999999999999766 6799999999999999999999984 467899999999999999
Q ss_pred ceeEEEEEEeccCCCc--ceEEEEccCC
Q 018029 90 TVLGSVIVTVESEGQT--GAVWYTLDSP 115 (362)
Q Consensus 90 dfIG~~~i~L~~l~~~--~~~w~~L~~~ 115 (362)
+.||.+.++|..+.++ ...-.+|+++
T Consensus 1118 d~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038 1118 DLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred cccccccccHhhcCcCCccceeeeccCc
Confidence 9999999999998433 2334445553
No 111
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.97 E-value=3.2e-09 Score=108.73 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=84.2
Q ss_pred eeEEEEEEEeeecCCCC------CCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 018029 13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI 80 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~------d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V 80 (362)
...|.|+|+.+.+++.. +.....||||.|.+- ..+.+|++..++.||.|+|+|.|.+..+ -..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999986421 233457999999982 4456888888999999999999988743 56799999
Q ss_pred EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
||+|...+++|+|++.+|+..+..+. +..+|..+.|.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-R~V~L~~~~G~ 584 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI-HAVPLFNRKGV 584 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc-ceEeccCCCcC
Confidence 99998889999999999999996653 46677766664
No 112
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.97 E-value=1.9e-10 Score=116.33 Aligned_cols=92 Identities=25% Similarity=0.402 Sum_probs=82.1
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-------eeEeeccccCCCCCeeccEEEEEecCC-----CcEEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIV 78 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-------~~~rT~~i~~t~nP~W~e~f~f~v~~~-----~~~L~~ 78 (362)
+....|.|.|+-|+++.+.|.+|.|||||+|.+.. ..++|+++.+|+||+|+|.|.|.++.+ ..-+.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 45667889999999999999999999999999963 345999999999999999999999743 334999
Q ss_pred EEEEcCCCCCCceeEEEEEEeccC
Q 018029 79 TIYDWDIIWKSTVLGSVIVTVESE 102 (362)
Q Consensus 79 ~V~D~d~~~~ddfIG~~~i~L~~l 102 (362)
+|+|+|-.+.+||-|++.+.|+++
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred EeeccceecccccchHHHHhhCCC
Confidence 999999999999999999999998
No 113
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.94 E-value=5.5e-09 Score=111.24 Aligned_cols=120 Identities=17% Similarity=0.351 Sum_probs=96.1
Q ss_pred CCCceeEEEEEEEeeecCCCCC--CCCCCCcEEEEEEC-CeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCC
Q 018029 9 QTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85 (362)
Q Consensus 9 ~~~~~~~L~V~Vi~A~~L~~~d--~~g~sDPyv~i~l~-~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~ 85 (362)
.+..-|++.|+|.+|++|...+ .++..|||+++... ....+|++..+++||.|||+|.+.+....++|.++|||.+.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 5566899999999999999988 68999999999974 33459999999999999999999998888999999999998
Q ss_pred CCCCceeEEEEEEeccC--CCc-ceEEEEcc---CCCCeeEEEEEEeec
Q 018029 86 IWKSTVLGSVIVTVESE--GQT-GAVWYTLD---SPSGQVCLHIKTIKL 128 (362)
Q Consensus 86 ~~~ddfIG~~~i~L~~l--~~~-~~~w~~L~---~~~G~i~l~l~~~~~ 128 (362)
..+|+.+|.+.++|..+ .+. ...-+.+. ...|+++-.+.+.+.
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~ 559 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPV 559 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecc
Confidence 89999999999999876 221 12233332 133666666665544
No 114
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.90 E-value=4.8e-09 Score=107.74 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=83.8
Q ss_pred EEEEEEEeeecCCCCC----CCCCCCcEEEEEEC-----CeeEeeccc-cCCCCCeeccEEEEEecC-CCcEEEEEEEEc
Q 018029 15 LIKLELLAAKNLIGAN----LNGTSDPYAIITCG-----SEKRFSSMV-PGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW 83 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d----~~g~sDPyv~i~l~-----~~~~rT~~i-~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~ 83 (362)
.|.|.|+++.++++.. .+..+||||.|.+. ....+|+++ .++.||.|+|+|.|.+.. +-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999765442 23458999999983 345589855 578999999999999974 356799999999
Q ss_pred CCCCCCceeEEEEEEeccCCCcceEEEEccCCCCeeE
Q 018029 84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~i~ 120 (362)
|..++|||+|+.++|+..+..+. +-.+|.+..|+.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~Gy-RhVpL~~~~G~~~ 732 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGY-RHVPLLSREGEAL 732 (746)
T ss_pred CCCCcccccceeeccHHHhhCce-eeeeecCCCCccc
Confidence 99999999999999999997654 3456766666643
No 115
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.90 E-value=1.3e-08 Score=104.13 Aligned_cols=105 Identities=14% Similarity=0.216 Sum_probs=83.2
Q ss_pred eeEEEEEEEeeecCC----C--CCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 018029 13 AYLIKLELLAAKNLI----G--ANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI 80 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~----~--~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V 80 (362)
...|.|+|+.+.+++ . .+.....||||.|.+. ..+.+|+++.++.||.|+|+|.|.+..+ -.-|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998752 1 1223457999999983 4567999999999999999999988743 46799999
Q ss_pred EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
||+|..+.++|+|++.+++..+..+. +.++|..+.|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy-R~V~L~~~~g~ 567 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI-RAFPLHSRKGE 567 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc-ceEEccCCCcC
Confidence 99998888999999999999996653 46677665554
No 116
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=98.89 E-value=4.9e-10 Score=115.26 Aligned_cols=301 Identities=24% Similarity=0.215 Sum_probs=198.7
Q ss_pred CCCCCCCCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCC-cEEEEEEE
Q 018029 3 QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIY 81 (362)
Q Consensus 3 ~~~~~~~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~-~~L~~~V~ 81 (362)
.++++......+......+.+.++.....++.++||..+.........+....+.+|.|++.+.|.-...+ ....+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf 165 (590)
T KOG1032|consen 86 GLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPF 165 (590)
T ss_pred CCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEee
Confidence 34566666667777777777777777777778999999998888888888889999999999999865432 44555666
Q ss_pred EcCCC-CCCceeEEEEEEecc-CCCcceEEEEccCCCCeeE---EEEEEeeccccccccccccccchhhhccccccCCCc
Q 018029 82 DWDII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPT 156 (362)
Q Consensus 82 D~d~~-~~ddfIG~~~i~L~~-l~~~~~~w~~L~~~~G~i~---l~l~~~~~~~~~~~~~~~~~~~~~r~r~~~~kl~~k 156 (362)
+++.. .+..-.|.+...+.- .......|..+.++.+... +.+.-........++..+....... ...-..+.+.
T Consensus 166 ~eI~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~-~~~~~~~~~~ 244 (590)
T KOG1032|consen 166 DEITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEP-EVNDDQQGNV 244 (590)
T ss_pred eeeeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCC-CcCccccccc
Confidence 65432 122223333322222 2445677888887766543 2222222222222222222211100 0000113345
Q ss_pred eeeccccccceeeccCCCcceeeeehhhhhhccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCc
Q 018029 157 VVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPA 236 (362)
Q Consensus 157 ~~~~k~~~f~~~F~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~ 236 (362)
+..+++..+...|++|.+|.+.+.++|.+.+..+++|+++++....||++.+||..+++.-++.+++.++-.......+.
T Consensus 245 ~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~ 324 (590)
T KOG1032|consen 245 DNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPR 324 (590)
T ss_pred ccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCC
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999988777776
Q ss_pred EEEEEecCCC---CCCCC--CCCCCCCceeEEEeeeechHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhhcCCCC
Q 018029 237 ITIILRMGAG---GHGVP--PLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSI 307 (362)
Q Consensus 237 i~i~~~~~~~---~~~~~--~~~~~~~~~~~~F~sf~~rd~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (362)
..+..|..++ .|+.. .-.+-.+...+.|..+... ++++....-...+........+.....+.++.+.
T Consensus 325 ~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~ 397 (590)
T KOG1032|consen 325 SGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSC 397 (590)
T ss_pred ccceeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCcce
Confidence 4455555444 34322 2223357778888877755 6666665555555554444444444444444443
No 117
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.88 E-value=8.1e-09 Score=82.26 Aligned_cols=82 Identities=16% Similarity=0.274 Sum_probs=69.3
Q ss_pred EEEEEEeeecCCCCC---CCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 018029 16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV 91 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d---~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddf 91 (362)
|.|+|.+|+++...+ +.+.+||||+++++.. +.||++ +.||.|||+|.|++. ....+.+.|||.... ..-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCC-eecc
Confidence 578999999999887 6788999999999866 778887 479999999999995 478899999998653 4557
Q ss_pred eEEEEEEeccC
Q 018029 92 LGSVIVTVESE 102 (362)
Q Consensus 92 IG~~~i~L~~l 102 (362)
||...+.++++
T Consensus 76 i~llW~~~sdi 86 (109)
T cd08689 76 VGLLWLRLSDI 86 (109)
T ss_pred eeeehhhHHHH
Confidence 88888888875
No 118
>PLN02228 Phosphoinositide phospholipase C
Probab=98.87 E-value=2.8e-08 Score=101.43 Aligned_cols=105 Identities=12% Similarity=0.189 Sum_probs=82.7
Q ss_pred eeEEEEEEEeeecCCC---C---CCCCCCCcEEEEEEC-----CeeEeeccccCCCCCee-ccEEEEEecCC-CcEEEEE
Q 018029 13 AYLIKLELLAAKNLIG---A---NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMW-GEEFNFSVDEL-PVQIIVT 79 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~---~---d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W-~e~f~f~v~~~-~~~L~~~ 79 (362)
...|.|+|++|.+|+. . +.....||||.+.+. ..+.+|+++.++.||.| +++|.|.+..+ -.-|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999998731 1 223458999999982 44569999988899999 99999998743 4579999
Q ss_pred EEEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 80 V~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
|||+|..+.++|+|++.+++..+..+ -+.++|..+.|+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~G-YR~VpL~~~~G~ 547 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSG-VRAVRLHDRAGK 547 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCC-eeEEEccCCCCC
Confidence 99999888899999999999999655 346678665554
No 119
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.68 E-value=7e-08 Score=96.05 Aligned_cols=114 Identities=17% Similarity=0.293 Sum_probs=94.3
Q ss_pred eeEEEEEEEeeecCCCCCCCC-CCCcEEEEEECCeeEeeccccCCCCCeec-cEEEEEecCC---CcEEEEEEEEcCCCC
Q 018029 13 AYLIKLELLAAKNLIGANLNG-TSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDEL---PVQIIVTIYDWDIIW 87 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g-~sDPyv~i~l~~~~~rT~~i~~t~nP~W~-e~f~f~v~~~---~~~L~~~V~D~d~~~ 87 (362)
.|.|.|++..|++|+-+|..+ ..|.||.+++.+..++|.+..+++||.|| +.|.|++.+. +.+|.+++.|+|.-+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 377899999999999998643 57999999999999999999999999999 7799999843 567999999999999
Q ss_pred CCceeEEEEEEeccC--C----------CcceEEEEccC----CCCeeEEEEEEe
Q 018029 88 KSTVLGSVIVTVESE--G----------QTGAVWYTLDS----PSGQVCLHIKTI 126 (362)
Q Consensus 88 ~ddfIG~~~i~L~~l--~----------~~~~~w~~L~~----~~G~i~l~l~~~ 126 (362)
.+|-||.+.+.++.+ . --...|+++-. -.|+|.+.+.+.
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd 136 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD 136 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence 999999999999875 1 12457999853 246776655543
No 120
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.56 E-value=3.9e-08 Score=103.12 Aligned_cols=97 Identities=22% Similarity=0.416 Sum_probs=85.0
Q ss_pred CCCCCC-CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeE--eeccccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 018029 5 KGDPQT-NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI 80 (362)
Q Consensus 5 ~~~~~~-~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~--rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V 80 (362)
++-++. +...+++|+|++|-+|.+.|.+|.+|||+.+.+++... +...+.+++||+|++.|.+...-+ ...+.++|
T Consensus 603 ~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~v 682 (1105)
T KOG1326|consen 603 LDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEV 682 (1105)
T ss_pred hcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEE
Confidence 444444 45678899999999999999999999999999987764 888999999999999999988743 56699999
Q ss_pred EEcCCCCCCceeEEEEEEecc
Q 018029 81 YDWDIIWKSTVLGSVIVTVES 101 (362)
Q Consensus 81 ~D~d~~~~ddfIG~~~i~L~~ 101 (362)
||+|..+.|+.||+..++|+.
T Consensus 683 yd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 683 YDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred EEeecccccchhhceehhhhh
Confidence 999999999999999999986
No 121
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.51 E-value=4.7e-07 Score=93.25 Aligned_cols=99 Identities=15% Similarity=0.260 Sum_probs=78.1
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeE-eeccccCCCCCeec-cEEEEEecCC-CcEEEEEEEEcC
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKR-FSSMVPGSRYPMWG-EEFNFSVDEL-PVQIIVTIYDWD 84 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~-rT~~i~~t~nP~W~-e~f~f~v~~~-~~~L~~~V~D~d 84 (362)
...|.|.|+.|+.|+... .|-.-|||.|.+ +..++ +|.++.|++||+|+ |+|+|++.++ -.-|+|.|||.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 467899999999998554 444569999997 34444 55566789999999 9999999865 456999999999
Q ss_pred CCCCCceeEEEEEEeccCCCcceEEEEcc
Q 018029 85 IIWKSTVLGSVIVTVESEGQTGAVWYTLD 113 (362)
Q Consensus 85 ~~~~ddfIG~~~i~L~~l~~~~~~w~~L~ 113 (362)
.++...|||+++.|+..+..+ -+.++|.
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~G-fRsVpLk 1170 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG-FRSVPLK 1170 (1267)
T ss_pred ccCCcceeeeeecchhhhhcc-ceeeecc
Confidence 999888999999999988443 2334554
No 122
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.44 E-value=6.3e-07 Score=91.32 Aligned_cols=108 Identities=23% Similarity=0.396 Sum_probs=81.5
Q ss_pred EeeecCCCCCCCCCCCcEEEEEECCee----EeeccccCCCCCeeccEEEEEecCC----------------CcEEEEEE
Q 018029 21 LAAKNLIGANLNGTSDPYAIITCGSEK----RFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQIIVTI 80 (362)
Q Consensus 21 i~A~~L~~~d~~g~sDPyv~i~l~~~~----~rT~~i~~t~nP~W~e~f~f~v~~~----------------~~~L~~~V 80 (362)
++++++.+.+ ++.+|||+.+...... .+|.+.+++.+|.|+|.|.|++... ...|++++
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 4455555554 5669999999985433 4999999999999999999988632 23489999
Q ss_pred EE-cCCCCCCceeEEEEEEeccC--CCcceEEEEccCC-----------CCeeEEEEEEeecc
Q 018029 81 YD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-----------SGQVCLHIKTIKLP 129 (362)
Q Consensus 81 ~D-~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~-----------~G~i~l~l~~~~~~ 129 (362)
|+ ++....++|+|++.+++... ....+.||.|.++ -|.+++.+.+....
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~ 279 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH 279 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence 98 56666699999999999886 4566789999752 15667777766543
No 123
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.42 E-value=2.6e-07 Score=93.52 Aligned_cols=106 Identities=21% Similarity=0.333 Sum_probs=88.2
Q ss_pred eeccccccceeeccCCCcceeeeehhhhhh---ccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEecccccc
Q 018029 158 VHQKPGPLQTIFNLLPDEFVELSYSCVIER---SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN 234 (362)
Q Consensus 158 ~~~k~~~f~~~F~lp~~E~l~~~~~c~l~~---~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~ 234 (362)
.+.+++.| .+|++| |.+.....|.++. +...+|+||+|.+|+||.|..+. ...+++|+..|..|+|.+....+
T Consensus 6 ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~ 81 (671)
T KOG4347|consen 6 ARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLF 81 (671)
T ss_pred hhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccc
Confidence 45678889 899999 9999999999988 34577999999999999999875 47899999999999999955555
Q ss_pred C-cEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHHHH
Q 018029 235 P-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAK 282 (362)
Q Consensus 235 ~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~~~~ 282 (362)
+ -|.+.++ +...+.|..+.+|+..+.-+.....
T Consensus 82 ~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~~~~~ 115 (671)
T KOG4347|consen 82 TQLISLFTS---------------NMVGMRFGGLTERLKLLSKLHLPPA 115 (671)
T ss_pred hhhhHHhhc---------------CcceEEecchhhHHHHHHHHhchHh
Confidence 5 6777764 4568999999999998877755554
No 124
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.37 E-value=1e-06 Score=88.43 Aligned_cols=174 Identities=14% Similarity=0.134 Sum_probs=118.4
Q ss_pred CCCCCCCCCCcEEEEEEC-------------------CeeEeeccccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCCC
Q 018029 27 IGANLNGTSDPYAIITCG-------------------SEKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDII 86 (362)
Q Consensus 27 ~~~d~~g~sDPyv~i~l~-------------------~~~~rT~~i~~t~nP~W~e~f~f~v~-~~~~~L~~~V~D~d~~ 86 (362)
.+.|..+++||.|.+... ....+|+++.+.+||.|.+.|.+.+. +..+.+++.+||.+..
T Consensus 3 ~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~ 82 (529)
T KOG1327|consen 3 MAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSR 82 (529)
T ss_pred cccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCc
Confidence 344556677777776541 12238999999999999999999886 6678899999998754
Q ss_pred ----CCCceeEEEEEEeccCCCcceEEEEccC------CCCeeEEEEEEeeccccccccccccccchhhhccccccCCCc
Q 018029 87 ----WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPT 156 (362)
Q Consensus 87 ----~~ddfIG~~~i~L~~l~~~~~~w~~L~~------~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~r~r~~~~kl~~k 156 (362)
...+|+|++.+.+..+.........|.. .+|.+ .+........... .+......+++++
T Consensus 83 ~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~g~i--ti~aee~~~~~~~---------~~~~~~~~~ld~k 151 (529)
T KOG1327|consen 83 TPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGSGTI--TISAEEDESDNDV---------VQFSFRAKNLDPK 151 (529)
T ss_pred cCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCcccE--EEEeecccccCce---------eeeeeeeeecCcc
Confidence 3578999999999997433332222221 23433 3333322211111 1122234678899
Q ss_pred eeeccccccceeeccC---------CCcceeeeehhhhhh-ccccc----eeEEEecceEEEeecCCCc
Q 018029 157 VVHQKPGPLQTIFNLL---------PDEFVELSYSCVIER-SFLYH----GRMYVSAWHICFHSNAFSR 211 (362)
Q Consensus 157 ~~~~k~~~f~~~F~lp---------~~E~l~~~~~c~l~~-~~~~~----G~lyis~~~~cF~S~~~g~ 211 (362)
++..++++|..++..- ..|++.++.++.|.. .++.+ +.+-.+....|++.+..|+
T Consensus 152 d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 152 DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred cccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCC
Confidence 9999999999999542 338999999999988 55544 5566777789999888775
No 125
>PLN02352 phospholipase D epsilon
Probab=98.32 E-value=5e-06 Score=87.18 Aligned_cols=109 Identities=12% Similarity=0.154 Sum_probs=80.8
Q ss_pred eeEEEEEEEeeecCCCC----CC-CCCCCcEEEEEECCeeE-eeccccCCCCCeeccEEEEEecCCC-cEEEEEEEEcCC
Q 018029 13 AYLIKLELLAAKNLIGA----NL-NGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDI 85 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~----d~-~g~sDPyv~i~l~~~~~-rT~~i~~t~nP~W~e~f~f~v~~~~-~~L~~~V~D~d~ 85 (362)
.|.|.++|.+|+-+... +. ....||||.+.++.... || .+..||.|+|.|.+.+.... ..+.|+|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 58899999999844322 11 12239999999976554 88 55669999999999998766 689999988
Q ss_pred CCCCceeEEEEEEeccC--CCc-ceEEEEccCCC-----C-eeEEEEEEeecc
Q 018029 86 IWKSTVLGSVIVTVESE--GQT-GAVWYTLDSPS-----G-QVCLHIKTIKLP 129 (362)
Q Consensus 86 ~~~ddfIG~~~i~L~~l--~~~-~~~w~~L~~~~-----G-~i~l~l~~~~~~ 129 (362)
...+||.+.+++.++ +.. .+.|+++.... | ++++.+.+....
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 367999999999998 323 78999996432 3 455666555443
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=4.7e-06 Score=78.50 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=82.2
Q ss_pred ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 018029 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW 83 (362)
Q Consensus 12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~ 83 (362)
...-+.|++++|..|..+|.+|-+||||...+. .-+.+|.+.+++++|.|++.|.+.+... ...+.+.|||+
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 345577999999999999999999999999884 3355899999999999999999988642 56799999999
Q ss_pred CCCCCCceeEEEEEEeccCCCcceEEEE
Q 018029 84 DIIWKSTVLGSVIVTVESEGQTGAVWYT 111 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~l~~~~~~w~~ 111 (362)
+.....+++|-..+.+....+-.++|+.
T Consensus 311 ~~G~s~d~~GG~~~g~~rr~~v~~h~gr 338 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGGYRRGEVHKHWGR 338 (362)
T ss_pred CCCcCccCCCcccccccccchhhcCccc
Confidence 9887889999877776665555555554
No 127
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.98 E-value=6.1e-06 Score=88.19 Aligned_cols=102 Identities=20% Similarity=0.307 Sum_probs=84.4
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEE-ecC--C-CcEEEEEEEEc
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE--L-PVQIIVTIYDW 83 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~-v~~--~-~~~L~~~V~D~ 83 (362)
.++|.|-|.-|++|.-...+..+||||+.++- ..+++|+++++|.||.|||..... ++. . .+.|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 57888999999999666667789999999983 346699999999999999998876 331 2 46799999999
Q ss_pred CCCCCCceeEEEEEEeccCC--CcceEEEEccC
Q 018029 84 DIIWKSTVLGSVIVTVESEG--QTGAVWYTLDS 114 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~l~--~~~~~w~~L~~ 114 (362)
+....+.|+|.+.++|.++. .....||.|..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 98888999999999999874 34458999964
No 128
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=8.5e-05 Score=75.39 Aligned_cols=100 Identities=18% Similarity=0.321 Sum_probs=82.4
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEE-C------CeeEeeccccCCCCCeeccEEEEEecCC----CcEEEEEEEE
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITC-G------SEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYD 82 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-~------~~~~rT~~i~~t~nP~W~e~f~f~v~~~----~~~L~~~V~D 82 (362)
..++|.|+.|.+|+... .|.-.|||.+.+ + +++..|++..++..|.+||+|.|-+..+ .-.|.+.|-|
T Consensus 1125 hkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKD 1203 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKD 1203 (1283)
T ss_pred ceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehh
Confidence 45789999999998764 677889999987 2 4456788888999999999999998743 2348999999
Q ss_pred cCCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029 83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~ 114 (362)
+.-...|..+|-+.++|.++ .+.-..|++|..
T Consensus 1204 YCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1204 YCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred heeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 88777789999999999998 556678999964
No 129
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.65 E-value=6.3e-05 Score=75.76 Aligned_cols=82 Identities=24% Similarity=0.323 Sum_probs=67.6
Q ss_pred EeeecCCCCCCCCCCCcEEEEEEC------CeeEeeccccCCCCCeeccEEEEEec-----CCCcEEEEEEEEcCCCCCC
Q 018029 21 LAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVD-----ELPVQIIVTIYDWDIIWKS 89 (362)
Q Consensus 21 i~A~~L~~~d~~g~sDPyv~i~l~------~~~~rT~~i~~t~nP~W~e~f~f~v~-----~~~~~L~~~V~D~d~~~~d 89 (362)
++|++|.++|..+++|||..+.-. ...++|++++++++|.| ..|.+... +....+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w-~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQW-APFSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcc-cccccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 568999999999999999998752 22349999999999999 44555432 4567899999999999999
Q ss_pred ceeEEEEEEeccCC
Q 018029 90 TVLGSVIVTVESEG 103 (362)
Q Consensus 90 dfIG~~~i~L~~l~ 103 (362)
++||++..++.++.
T Consensus 222 ~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQ 235 (529)
T ss_pred CceeEecccHHHhc
Confidence 99999999988873
No 130
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.63 E-value=0.0001 Score=60.84 Aligned_cols=97 Identities=20% Similarity=0.315 Sum_probs=72.9
Q ss_pred EEEEEEeeecCCCCC-------------CCCCCCcEEEEEE----CCeeEeeccccCCCCCeeccEEEEEec--------
Q 018029 16 IKLELLAAKNLIGAN-------------LNGTSDPYAIITC----GSEKRFSSMVPGSRYPMWGEEFNFSVD-------- 70 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d-------------~~g~sDPyv~i~l----~~~~~rT~~i~~t~nP~W~e~f~f~v~-------- 70 (362)
|.|.|.+|.+|+... ..-.-++||.+.+ +.+.++|+++.++-.|.|+-.++|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 457788888886431 0112579999986 356779999999999999999999875
Q ss_pred C--------CCcEEEEEEEEcCCC----------CCCceeEEEEEEeccC---CCcceEEEEc
Q 018029 71 E--------LPVQIIVTIYDWDII----------WKSTVLGSVIVTVESE---GQTGAVWYTL 112 (362)
Q Consensus 71 ~--------~~~~L~~~V~D~d~~----------~~ddfIG~~~i~L~~l---~~~~~~w~~L 112 (362)
+ +...+.++||+.+.. .+|-.||.+.+|+.++ ..+..+||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 124589999997632 2456899999999997 5667889875
No 131
>PLN02964 phosphatidylserine decarboxylase
Probab=97.47 E-value=0.00025 Score=74.00 Aligned_cols=83 Identities=14% Similarity=0.287 Sum_probs=70.3
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEE-EEECCeeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCc
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAI-ITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST 90 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~-i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~dd 90 (362)
.|...+++++|+ |+. .|||.. +.++.+..+|.+.++|+||+||+...|.+.+ .....++.|||++..++++
T Consensus 53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 588889999988 443 588655 6779999999999999999999999999874 3344799999999999999
Q ss_pred eeEEEEEEeccC
Q 018029 91 VLGSVIVTVESE 102 (362)
Q Consensus 91 fIG~~~i~L~~l 102 (362)
.+|.++++|.+.
T Consensus 126 lv~~~e~~~t~f 137 (644)
T PLN02964 126 LVGYCELDLFDF 137 (644)
T ss_pred hhhheeecHhhc
Confidence 999999988765
No 132
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.00015 Score=69.56 Aligned_cols=104 Identities=14% Similarity=0.254 Sum_probs=84.7
Q ss_pred CceeEEEEEEEeeecCCCCCC-CCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEE-Ec
Q 018029 11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DW 83 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~-~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~-D~ 83 (362)
...|.+.|+|++|++|..+.- ...++|||.|++- . .+.+|+...++++|.+-+...|.-..+...|.++|| |+
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence 346899999999999987642 3368999999983 2 233888889999999988888888777888999999 67
Q ss_pred CCCCCCceeEEEEEEeccCC---CcceEEEEccC
Q 018029 84 DIIWKSTVLGSVIVTVESEG---QTGAVWYTLDS 114 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~l~---~~~~~w~~L~~ 114 (362)
..+-+..|+|.+++-+++++ .....||+|-+
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 77777889999999999983 35678999975
No 133
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.32 E-value=4.9e-05 Score=80.50 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=81.8
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEec----------CCCcEEEEEEEE
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD----------ELPVQIIVTIYD 82 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~----------~~~~~L~~~V~D 82 (362)
.+.+++.+.+|+.|...|..+.+|||+.+...++.+.|.++.++++|.|++...|.-- .....+.+++||
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd 284 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYD 284 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeeh
Confidence 4556677889999999999999999999999999999999999999999999988521 123448899999
Q ss_pred cCCCCCCceeEEEEEEeccC-CCcceEEEEcc
Q 018029 83 WDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD 113 (362)
Q Consensus 83 ~d~~~~ddfIG~~~i~L~~l-~~~~~~w~~L~ 113 (362)
.|..+.++|+|.......-. ....-.|+++.
T Consensus 285 ~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~ 316 (1105)
T KOG1326|consen 285 LDRSGINEFKGRKKQRPYVMVQCPALKWVPTM 316 (1105)
T ss_pred hhhhchHHhhcccccceEEEecCCccceEEee
Confidence 99999999999977655433 33555677764
No 134
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=6.6e-05 Score=70.91 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=76.3
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEec--CC--CcEEEEEEEEc
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDW 83 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~--~~--~~~L~~~V~D~ 83 (362)
...+..++..|++|++++.++..|||+.+.+. ..+.+|++..+++||.|+|......- +. ...+++.|.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 45678999999999999999999999999884 23468899999999999988766542 21 34588899999
Q ss_pred CCCCCCceeEEEEEEeccCCCc
Q 018029 84 DIIWKSTVLGSVIVTVESEGQT 105 (362)
Q Consensus 84 d~~~~ddfIG~~~i~L~~l~~~ 105 (362)
+.+..++++|+..+.+..+.+.
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~p~ 193 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLKPL 193 (362)
T ss_pred cccccccCcccchhhhhccChh
Confidence 9998899999999988887443
No 135
>PF14470 bPH_3: Bacterial PH domain
Probab=97.17 E-value=0.0062 Score=47.60 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=67.9
Q ss_pred cCCCcceeeeehhhhhhc-cccceeEEEecceEEEeecC-CCceeEEEeecccceEEEEeccccccCcEEEEEecCCCCC
Q 018029 171 LLPDEFVELSYSCVIERS-FLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGH 248 (362)
Q Consensus 171 lp~~E~l~~~~~c~l~~~-~~~~G~lyis~~~~cF~S~~-~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~~~~~ 248 (362)
|.++|.+.....|.+... -...|-+.+|+..+-|.+.- ++......|||++|.+|+-.+.. +...|.|.+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~------- 72 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET------- 72 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-------
Confidence 457888888888887642 23349999998888888754 67788899999999999998764 456788877
Q ss_pred CCCCCCCCCCceeEEEeeeechHHHHHHH
Q 018029 249 GVPPLGSPDGRVRYKFASFWNRNHALRQL 277 (362)
Q Consensus 249 ~~~~~~~~~~~~~~~F~sf~~rd~~~~~l 277 (362)
+++++.|.++ +.+++-.+.
T Consensus 73 ---------~~~~~~i~~i-~k~~~~~~~ 91 (96)
T PF14470_consen 73 ---------NGEKIKIDNI-QKGDVKEFY 91 (96)
T ss_pred ---------CCEEEEEEEc-CHHHHHHHH
Confidence 3479999988 666654443
No 136
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.15 E-value=0.00059 Score=52.67 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=66.5
Q ss_pred EEEEeeecCCCCCCCCC-CCcEEE--EEECC-eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCc
Q 018029 18 LELLAAKNLIGANLNGT-SDPYAI--ITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKST 90 (362)
Q Consensus 18 V~Vi~A~~L~~~d~~g~-sDPyv~--i~l~~-~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~dd 90 (362)
++|+.|++|.-....|. +.-|+. +.+.+ ...+|+..+...||.|.|+|.|.+.. ....|.|.||. ...+.+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 78999999975543332 223443 22333 34588888899999999999998863 24569999998 445678
Q ss_pred eeEEEEEEeccCC-CcceEEEE
Q 018029 91 VLGSVIVTVESEG-QTGAVWYT 111 (362)
Q Consensus 91 fIG~~~i~L~~l~-~~~~~w~~ 111 (362)
.||.+.+.+.+++ +..++|..
T Consensus 81 ~iG~~sL~l~s~geeE~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLSTQETDHWLE 102 (103)
T ss_pred eeeEEEeecccCCHHHhhhhhc
Confidence 9999999999985 45667765
No 137
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=96.76 E-value=0.0014 Score=52.79 Aligned_cols=87 Identities=22% Similarity=0.330 Sum_probs=59.6
Q ss_pred eeeehhhhhh-ccccceeEEEecceEEEeec---------------CCCceeEEEeecccceEEEEeccccccCcEEEEE
Q 018029 178 ELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL 241 (362)
Q Consensus 178 ~~~~~c~l~~-~~~~~G~lyis~~~~cF~S~---------------~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~ 241 (362)
.-++.|.+.. ...+.|.+.++.+++.|..+ .........+|+.||..|.+-.-..=.-||+|.+
T Consensus 3 ~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF~ 82 (106)
T PF14844_consen 3 LLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIFF 82 (106)
T ss_dssp SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEEE
Confidence 4467888877 44567999999999999876 3334556789999999999877543334999999
Q ss_pred ecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHH
Q 018029 242 RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQL 277 (362)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l 277 (362)
.+| ....+.|.+...||++|+.|
T Consensus 83 ~dg-------------~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 83 SDG-------------RSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp TTS--------------EEEEE-SSHHHHHHHHCCS
T ss_pred cCC-------------cEEEEEcCCHHHHHHHHHhh
Confidence 764 33455555667788877644
No 138
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.89 E-value=0.077 Score=46.67 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=66.9
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee----EeeccccCCCCCeeccEEEEEec--C--CCcEEEEEEEEc
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDW 83 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~----~rT~~i~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~D~ 83 (362)
..+.|+|+.+.+|... ...++-||.+.+ +.+. ..|..+..+..+.|+|.+.|++. + ...+|.|+||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4678999999998752 234566777654 4332 25555554567999999999765 3 356799999997
Q ss_pred CCCC----------------CCceeEEEEEEeccCCCcceEEEEccCCCCeeEEEEE
Q 018029 84 DIIW----------------KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124 (362)
Q Consensus 84 d~~~----------------~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~i~l~l~ 124 (362)
.... +...||.+.++|-+-.. .| +.|...+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~------~L--r~G~~~L~lW 134 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG------QL--KTGDHTLYMW 134 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcccc------hh--hcCCeEEEec
Confidence 6422 24688999888876432 12 3566666654
No 139
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.73 E-value=0.11 Score=45.08 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=67.3
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee----EeeccccCCCCCeeccEEEEEec--C--CCcEEEEEEEEc
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDW 83 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~----~rT~~i~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~D~ 83 (362)
..++|+++++.++.-. ..+|-||.+.+ +.+. ..|..+.. .++.|||...|++. + ...+|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4578999999998754 34688888765 3332 24444443 57999999999875 2 366899999997
Q ss_pred CCCC----CCceeEEEEEEeccCCCcceEEEEccCCCCeeEEEEEE
Q 018029 84 DIIW----KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKT 125 (362)
Q Consensus 84 d~~~----~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~i~l~l~~ 125 (362)
.... ....+|.+.++|-+-.+ .| +.|...+++..
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~~------~L--r~G~~~L~lW~ 121 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYTD------TL--VSGKMALNLWP 121 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCCC------hh--hCCCEEEEEEc
Confidence 6421 22579999999877532 12 25666666653
No 140
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=95.52 E-value=0.19 Score=39.21 Aligned_cols=85 Identities=13% Similarity=0.270 Sum_probs=60.3
Q ss_pred CCCCcEEEEEECCeeE-eeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEeccCCCcceEEEE
Q 018029 33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT 111 (362)
Q Consensus 33 g~sDPyv~i~l~~~~~-rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~ 111 (362)
|.++-.+++.+++... +|.-.. ..+..|++.|.+++.. .++|.+.||-.|- ..+.|-..+.|++... ..-.+
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~~--~~~~~ 79 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDERH--EVQLD 79 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhcc--cceec
Confidence 4478899999987654 665443 3578999999999986 6789999998764 2466777778877432 34455
Q ss_pred ccCCCCeeEEEEEE
Q 018029 112 LDSPSGQVCLHIKT 125 (362)
Q Consensus 112 L~~~~G~i~l~l~~ 125 (362)
|.+ .|.+...+++
T Consensus 80 lep-qg~l~~ev~f 92 (98)
T cd08687 80 MEP-QLCLVAELTF 92 (98)
T ss_pred ccc-ccEEEEEEEe
Confidence 665 6777666654
No 141
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=95.37 E-value=0.085 Score=45.76 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=59.2
Q ss_pred CCCCCcEEEEEE--CCee----EeeccccCCCCCeeccEEEEEec----CCCcEEEEEEEEcCCCCCCceeEEEEEEecc
Q 018029 32 NGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES 101 (362)
Q Consensus 32 ~g~sDPyv~i~l--~~~~----~rT~~i~~t~nP~W~e~f~f~v~----~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~ 101 (362)
...+|-||.+.+ ++.. .+|..+.-+..+.|||...|++. +....|.|+|||.+..++...+|.++++|-+
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 345788888766 3332 25655555667899999999875 2367899999999876667899999999977
Q ss_pred CCCcceEEEEccCCCCeeEEEEE
Q 018029 102 EGQTGAVWYTLDSPSGQVCLHIK 124 (362)
Q Consensus 102 l~~~~~~w~~L~~~~G~i~l~l~ 124 (362)
-.+ .| +.|...+.+.
T Consensus 107 ~~g------~L--r~G~~~l~lw 121 (159)
T cd08397 107 KDG------TL--RRGRQKLRVW 121 (159)
T ss_pred CCC------cE--ecCCEEEEEE
Confidence 532 12 2566656554
No 142
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.35 E-value=0.019 Score=56.05 Aligned_cols=114 Identities=10% Similarity=0.117 Sum_probs=79.0
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---C---------cEE
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---P---------VQI 76 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~---------~~L 76 (362)
..|.+.|+++.+++-....-.-|-|+.+... .++.+|.+++++.+|.|++.|.+.+... + ..+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3456777788777543322224667777652 3456999999999999999999988641 1 129
Q ss_pred EEEEEEcCCC-CCCceeEEEEEEeccCC--CcceEEEEccC----CCCeeEEEEEEee
Q 018029 77 IVTIYDWDII-WKSTVLGSVIVTVESEG--QTGAVWYTLDS----PSGQVCLHIKTIK 127 (362)
Q Consensus 77 ~~~V~D~d~~-~~ddfIG~~~i~L~~l~--~~~~~w~~L~~----~~G~i~l~l~~~~ 127 (362)
+|++|....+ ..|.++|.+.+.|..+. ......++|.. -+|.+.+.+++..
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQ 504 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEec
Confidence 9999998754 35789999999999873 33445666643 2477766666553
No 143
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.34 E-value=0.045 Score=58.14 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=72.5
Q ss_pred ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-C------CeeEeecccc-CCCCCeecc-EEEEEec--CCCcEEEEEE
Q 018029 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-G------SEKRFSSMVP-GSRYPMWGE-EFNFSVD--ELPVQIIVTI 80 (362)
Q Consensus 12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-~------~~~~rT~~i~-~t~nP~W~e-~f~f~v~--~~~~~L~~~V 80 (362)
..+.+.|+|+++.-|.+++ ...||.|.+ + ...+||+++. ++.||+|+| .|.|.-- +.-..|+|.|
T Consensus 701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV 776 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence 3688999999999998776 348999987 2 2445888876 679999985 5777532 3355699999
Q ss_pred EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029 81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118 (362)
Q Consensus 81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~ 118 (362)
|+... .|||+--+++..+..+ -+.+.|.+..++
T Consensus 777 yeEgg----K~ig~RIlpvd~l~~G-Yrhv~LRse~Nq 809 (1189)
T KOG1265|consen 777 YEEGG----KFIGQRILPVDGLNAG-YRHVCLRSESNQ 809 (1189)
T ss_pred eccCC----ceeeeeccchhcccCc-ceeEEecCCCCC
Confidence 99754 5999999999998655 344566554443
No 144
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.27 E-value=0.14 Score=43.93 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=59.2
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee----EeeccccCCCCCeeccEEEEEec--C--CCcEEEEEEEEc
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDW 83 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~----~rT~~i~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~D~ 83 (362)
..+.|++....++...+ ....+-||.+.+ +.+. ..|.....+.++.|||...|++. . ...+|.+++|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35677777777765411 234566676655 3321 23433333467999999999864 2 356799999998
Q ss_pred CCCC--CCceeEEEEEEeccC
Q 018029 84 DIIW--KSTVLGSVIVTVESE 102 (362)
Q Consensus 84 d~~~--~ddfIG~~~i~L~~l 102 (362)
+..+ ++..||.+.++|-+.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 7654 467999999999775
No 145
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.21 E-value=0.35 Score=47.10 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=77.3
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC--------CCcEEEEEEEEcC-CC
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II 86 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~--------~~~~L~~~V~D~d-~~ 86 (362)
+.|.|++|++.+... ...-.+.-++++....|..+..+-.|.|+.+...+++. ..++|++++|..| ..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 568999999997652 23445566788999999999999999999999998862 2567999999998 55
Q ss_pred CCCceeEEEEEEeccC---C----CcceEEEEccCC
Q 018029 87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP 115 (362)
Q Consensus 87 ~~ddfIG~~~i~L~~l---~----~~~~~w~~L~~~ 115 (362)
+..+.||.+-++|... . .....||+|.+-
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 5678999999999886 2 235689999753
No 146
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.85 E-value=0.08 Score=50.14 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=75.1
Q ss_pred CceeEEEEEEEeeecCCCCC--CCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 018029 11 NSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW 87 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d--~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~ 87 (362)
...|.|-++++.+++|+-.. .+-+-+-||++.++.+ +.||.+-....--.|.|.|..++.. ...+.+-||.|+.-.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 45688999999999996443 2456789999998755 3466655555555789999998875 567889999998766
Q ss_pred CCceeEEEEEEeccC-CCcceEEEE--ccCCCCeeEEEEEEe
Q 018029 88 KSTVLGSVIVTVESE-GQTGAVWYT--LDSPSGQVCLHIKTI 126 (362)
Q Consensus 88 ~ddfIG~~~i~L~~l-~~~~~~w~~--L~~~~G~i~l~l~~~ 126 (362)
.+.+.-..-+.+..+ ....++.+. |++ .|++.+++...
T Consensus 127 RHKLC~~g~l~~~~v~rqspd~~~Al~leP-rgq~~~r~~~~ 167 (442)
T KOG1452|consen 127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-RGQPPLRLPLA 167 (442)
T ss_pred hccccccchhhhhhhhhcCCcceeeeeccc-CCCCceecccC
Confidence 565433333333333 233333333 444 68777766543
No 147
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.77 E-value=0.52 Score=40.64 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=66.6
Q ss_pred CceeEEEEEEEeeecCCCCCC--CCCCCcEEEE--EECCeeEeeccccCCCCCeeccEEEEEecCC--------------
Q 018029 11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAII--TCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-------------- 72 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~--~g~sDPyv~i--~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-------------- 72 (362)
+....|.+.|+.++-...--. -+..+....+ .++++.++|..+..+.+|.|++.|.|++...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 445678899988885433211 0344444444 4478999999999999999999999998632
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEEEeccC
Q 018029 73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (362)
Q Consensus 73 ~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l 102 (362)
.+++.+.|--.|..+...++|+-.+....+
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~v 115 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKV 115 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHH
Confidence 245788887777766668899988888876
No 148
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.49 E-value=0.2 Score=43.93 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=63.4
Q ss_pred eeEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee----Eeecccc--C--CCCCeeccEEEEEec----CCCcEEEE
Q 018029 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVP--G--SRYPMWGEEFNFSVD----ELPVQIIV 78 (362)
Q Consensus 13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~----~rT~~i~--~--t~nP~W~e~f~f~v~----~~~~~L~~ 78 (362)
...+.|+|.++.+++........|-|+.+.+ +.+. ..|+... + ...+.|||...|++. +...+|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4568899999999987765556788888866 4332 2333221 1 235779999999875 23567999
Q ss_pred EEEEcCCCC---------CCceeEEEEEEeccC
Q 018029 79 TIYDWDIIW---------KSTVLGSVIVTVESE 102 (362)
Q Consensus 79 ~V~D~d~~~---------~ddfIG~~~i~L~~l 102 (362)
++|+....+ ++..||.+.++|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999986543 357899999998775
No 149
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.20 E-value=1 Score=38.08 Aligned_cols=55 Identities=29% Similarity=0.335 Sum_probs=40.8
Q ss_pred eeccccCC-CCCeeccEEEEEec----CCCcEEEEEEEEcCCCCCC----ceeEEEEEEeccCC
Q 018029 49 FSSMVPGS-RYPMWGEEFNFSVD----ELPVQIIVTIYDWDIIWKS----TVLGSVIVTVESEG 103 (362)
Q Consensus 49 rT~~i~~t-~nP~W~e~f~f~v~----~~~~~L~~~V~D~d~~~~d----dfIG~~~i~L~~l~ 103 (362)
.|....-+ .++.|+|...|.+. +....|.|+||+.+..... ..||.+.++|-+..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 56555555 79999999999874 3467899999998876555 69999999987763
No 150
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.01 E-value=1 Score=39.75 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=60.7
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee---EeeccccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcCC
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK---RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWDI 85 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~---~rT~~i~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~D~d~ 85 (362)
.++|+|..+..+ ..+......-||.+.+ +... .+|....-+.+|.|||...|++. + ...+|.|+||+...
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 567787777633 3222222334555443 3322 25666666677999999988865 2 36689999999742
Q ss_pred CC----------------CCceeEEEEEEeccCCCcceEEEEccCCCCeeEEEEEEee
Q 018029 86 IW----------------KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIK 127 (362)
Q Consensus 86 ~~----------------~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~i~l~l~~~~ 127 (362)
.. .+..||.+.+.|-+-.. .| +.|+..+++.-.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~------~L--r~G~~~L~~W~~~ 139 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF------LL--RTGEYVLHMWQIS 139 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCCC------ce--ecCCEEEEEecCC
Confidence 21 13466777777655422 11 3566666665433
No 151
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.81 E-value=6.7 Score=32.65 Aligned_cols=113 Identities=18% Similarity=0.273 Sum_probs=68.3
Q ss_pred CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCee---Eeecccc-CCCCCeeccEEEEEec----C-----CCcEEE
Q 018029 11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMVP-GSRYPMWGEEFNFSVD----E-----LPVQII 77 (362)
Q Consensus 11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~---~rT~~i~-~t~nP~W~e~f~f~v~----~-----~~~~L~ 77 (362)
.....+.|.+.+..+++. ...--||....+... ..|+... .+..-.|++.|.+.+. . ....+.
T Consensus 4 ~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 4 AVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred eeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 345678899999998876 122334444444332 3443333 4455789999998764 1 133489
Q ss_pred EEEEEcCCCCCCceeEEEEEEeccC-C---CcceEEEEccCC-CC--eeEEEEEEee
Q 018029 78 VTIYDWDIIWKSTVLGSVIVTVESE-G---QTGAVWYTLDSP-SG--QVCLHIKTIK 127 (362)
Q Consensus 78 ~~V~D~d~~~~ddfIG~~~i~L~~l-~---~~~~~w~~L~~~-~G--~i~l~l~~~~ 127 (362)
|.|+.....++...+|.+.++|++. . .....-+.|... .. .+.+.|....
T Consensus 80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE 136 (143)
T ss_pred EEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence 9999875433336899999999996 2 234455666542 33 3444444433
No 152
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=90.47 E-value=1.8 Score=41.79 Aligned_cols=100 Identities=23% Similarity=0.265 Sum_probs=73.6
Q ss_pred ccCCCcceeeeehhhhhhcccc--ceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEEEecCCCC
Q 018029 170 NLLPDEFVELSYSCVIERSFLY--HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGG 247 (362)
Q Consensus 170 ~lp~~E~l~~~~~c~l~~~~~~--~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~~~~ 247 (362)
.+-++|.+.+.+.-.|.-+-.. -|.+++|+-.+.||++.- ..-.+.|||-.|.+|....+ .+++|++|.|...+|
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~n-e~fNVSiPylqi~~i~ir~S-KfG~aLVieT~~~sG- 226 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMN-ESFNVSIPYLQIKSIRIRDS-KFGPALVIETSESSG- 226 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCC-ccccccchHhhheeeeeecc-ccceEEEEEEeccCC-
Confidence 4557788888888888663221 199999999999999874 35678999999999977665 789999999976444
Q ss_pred CCCCCCCCCCCceeEEEeeeech----HHHHHHHHHHHHHHH
Q 018029 248 HGVPPLGSPDGRVRYKFASFWNR----NHALRQLQRTAKNYH 285 (362)
Q Consensus 248 ~~~~~~~~~~~~~~~~F~sf~~r----d~~~~~l~~~~~~~~ 285 (362)
.|...==++- ++.|+-|..+|+.+.
T Consensus 227 -------------gYVLGFRvDP~ErL~~l~KEi~sLh~vy~ 255 (339)
T PF07289_consen 227 -------------GYVLGFRVDPEERLQELFKEIQSLHKVYS 255 (339)
T ss_pred -------------cEEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 5665544441 456666667776554
No 153
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=90.25 E-value=2 Score=33.99 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=45.2
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee----EeeccccCCCCCeeccEEEEEec----CCCcEEEEEEEEcCC
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWDI 85 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~----~rT~~i~~t~nP~W~e~f~f~v~----~~~~~L~~~V~D~d~ 85 (362)
+.+.+....+.........++-||.+.+ +++. ..|..+.-+..+.|||...|++. +....|.+++|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4456666666554433333578888866 4332 25555554566899999999765 235679999999754
No 154
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=89.42 E-value=1.2 Score=34.75 Aligned_cols=49 Identities=20% Similarity=0.431 Sum_probs=33.5
Q ss_pred ceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEEE
Q 018029 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL 241 (362)
Q Consensus 192 ~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~ 241 (362)
.|++|+|.+.+||.-+.-.....+.||+.+|..++....++ .-+-.|++
T Consensus 37 ~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~-~sSpKI~l 85 (89)
T PF11605_consen 37 NGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL-KSSPKIIL 85 (89)
T ss_dssp CEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT-SSS-EEEE
T ss_pred CCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc-CCCCeEEE
Confidence 39999999999997544333446999999999996665443 44544444
No 155
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=88.60 E-value=1.4 Score=35.94 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=49.0
Q ss_pred ccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEecc--ccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEe
Q 018029 188 SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH--AFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFA 265 (362)
Q Consensus 188 ~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~ 265 (362)
.+.-+|++.+..+-+=||.+.-. +-=+-|||.+|..|.-.-. ...+|...|.|+. +-+|.|+
T Consensus 20 g~~~yGkimiGDkaFEFyn~~n~-~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~---------------~G~f~Fs 83 (118)
T PF06115_consen 20 GLGKYGKIMIGDKAFEFYNDRNV-EDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKK---------------NGKFTFS 83 (118)
T ss_pred cccccCeEEEcccceEeecCCCh-hhcEEeChhheeEEEEEEEECCCEEeeEEEEECC---------------CCEEEEE
Confidence 34467999999988888876533 4458999999999987765 2456778888864 2389998
Q ss_pred eeec
Q 018029 266 SFWN 269 (362)
Q Consensus 266 sf~~ 269 (362)
|=-+
T Consensus 84 skd~ 87 (118)
T PF06115_consen 84 SKDS 87 (118)
T ss_pred ECCh
Confidence 7544
No 156
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=88.47 E-value=2.9 Score=31.76 Aligned_cols=61 Identities=21% Similarity=0.428 Sum_probs=40.8
Q ss_pred eeEEEecce--EEEeecCCCceeEEEeecccceEEEEeccccccC--cEEEEEecCCCCCCCCCCCCCCCceeEEEe
Q 018029 193 GRMYVSAWH--ICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP--AITIILRMGAGGHGVPPLGSPDGRVRYKFA 265 (362)
Q Consensus 193 G~lyis~~~--~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~ 265 (362)
|.||++... +-|...--+....+.||+.+|...+-+... .+ -+.|+.+.+. ......|.|+
T Consensus 14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~--s~Kv~Lki~~~~~~----------~~~~~~f~F~ 78 (79)
T PF08567_consen 14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEG--SPKVMLKIVLKDDS----------SEESKTFVFT 78 (79)
T ss_dssp EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TT--SSTEEEEEEETTSC-------------CCCEEE-
T ss_pred cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCC--CcceEEEEEEecCC----------cccceEEEEe
Confidence 999999999 999886544444799999999998766643 23 4667765431 1245678886
No 157
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=88.38 E-value=0.62 Score=37.52 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=58.2
Q ss_pred ceeeeehhhhhh-ccccceeEEEecceEEEeecC----C-Ccee---------EEEeecccceEEEEeccccccCcEEEE
Q 018029 176 FVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----F-SRQM---------KVIIPIGDIDEIQRSQHAFINPAITII 240 (362)
Q Consensus 176 ~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~S~~----~-g~~~---------k~~ip~~di~~i~k~~~~~~~~~i~i~ 240 (362)
.++-+..|.+.. -....|++-||..++.|.-+. + +... ...+|+++|.+|.+-.-..=.-|++|.
T Consensus 2 ~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF 81 (108)
T cd01201 2 PVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALELF 81 (108)
T ss_pred CeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEEE
Confidence 344556777777 344569999999999999641 1 1111 227899999999887754434499999
Q ss_pred EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHH
Q 018029 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQ 278 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~ 278 (362)
...| .=.|-+|-+++....++.
T Consensus 82 ~~d~----------------~~~f~~F~~~~~~k~vv~ 103 (108)
T cd01201 82 LASR----------------TSIFFAFPDQNAVKKVVY 103 (108)
T ss_pred EeCC----------------ceEEEEeCcHHHHHHHHh
Confidence 9542 334445777777666653
No 158
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=87.72 E-value=3.1 Score=36.74 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=33.8
Q ss_pred EeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCC---ceeEEEEEEecc
Q 018029 48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKS---TVLGSVIVTVES 101 (362)
Q Consensus 48 ~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~d---dfIG~~~i~L~~ 101 (362)
..|.+...+.+|.|+|+|.+.++. ....|.|++|+.....+. ..+|-+.++|.+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 367777788999999999999984 255699999997643322 689999999887
No 159
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=85.05 E-value=2.1 Score=44.74 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=57.9
Q ss_pred eehhhhhhccccceeEEEe----cceEEEeecC------------CCceeEEEeecccceEEEEeccccc----------
Q 018029 180 SYSCVIERSFLYHGRMYVS----AWHICFHSNA------------FSRQMKVIIPIGDIDEIQRSQHAFI---------- 233 (362)
Q Consensus 180 ~~~c~l~~~~~~~G~lyis----~~~~cF~S~~------------~g~~~k~~ip~~di~~i~k~~~~~~---------- 233 (362)
.|.|-|+.+ .|.+||+ .-.++|.+.- -....-..||+.||.+++|......
T Consensus 520 ~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~ 596 (642)
T PF11696_consen 520 EFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWAL 596 (642)
T ss_pred eeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeec
Confidence 466777664 3999999 4467887751 1234558999999999999875321
Q ss_pred -----cCcEEEE-EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 018029 234 -----NPAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR 279 (362)
Q Consensus 234 -----~~~i~i~-~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~ 279 (362)
..+++|+ ++ ..+.|.++....||+.|+.|-.
T Consensus 597 g~kEv~DGL~I~g~~---------------~g~~y~lTA~~~RDeLFNRLiA 633 (642)
T PF11696_consen 597 GEKEVVDGLVIVGDE---------------PGQEYHLTAMPRRDELFNRLIA 633 (642)
T ss_pred CCcccccceEEeccC---------------CCCEEEEEecchHHHHHHHHHh
Confidence 1234444 32 3369999999999999998854
No 160
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=84.67 E-value=11 Score=32.94 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=51.6
Q ss_pred CCCcEEEEEECCeeE-eeccccC--CCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEeccC
Q 018029 34 TSDPYAIITCGSEKR-FSSMVPG--SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE 102 (362)
Q Consensus 34 ~sDPyv~i~l~~~~~-rT~~i~~--t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l 102 (362)
+..-|+++.++++.. +|+...- ...=.|++.|.+.+..-+..|.++||.... ..+..|+++.+++-..
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 345788888876654 5554432 233457899999998888999999999887 5788999999998765
No 161
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=81.19 E-value=15 Score=32.83 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=40.4
Q ss_pred eEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC--CceeEEEEEEecc
Q 018029 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK--STVLGSVIVTVES 101 (362)
Q Consensus 47 ~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~--ddfIG~~~i~L~~ 101 (362)
..+|-+...+.+|.|+|++.+.++. ....|.|++++.....+ ...+|-+.++|-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 3478888888999999999999973 35569998888543211 2567877777754
No 162
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=81.07 E-value=17 Score=32.60 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=40.2
Q ss_pred eEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC-CC---CceeEEEEEEecc
Q 018029 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-WK---STVLGSVIVTVES 101 (362)
Q Consensus 47 ~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~-~~---ddfIG~~~i~L~~ 101 (362)
..+|-+...+.+|.|+|++.+.++. ....|.|++++.... .+ ...+|-+.++|-.
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~ 115 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQ 115 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeec
Confidence 3477777788999999999999973 356799999886421 12 2467877777753
No 163
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.63 E-value=8 Score=40.08 Aligned_cols=99 Identities=19% Similarity=0.315 Sum_probs=71.4
Q ss_pred cceee-ccCCCcceeeeehhhhhhccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEecccccc-C--cEEEE
Q 018029 165 LQTIF-NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN-P--AITII 240 (362)
Q Consensus 165 f~~~F-~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~-~--~i~i~ 240 (362)
+...| .||.+..+...|-|-+.. ...|.+++|+-.+-|.+.--+..--+-+|+.=|+.|+|...+.-+ + .++|+
T Consensus 30 ~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i~ 107 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEIT 107 (717)
T ss_pred ccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEEE
Confidence 55666 455555556668888887 667999999999999997766666789999999999999854333 2 67777
Q ss_pred EecCCCCCCCCCCCCCCCceeEEEeeeec-hHHHHHHHH
Q 018029 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWN-RNHALRQLQ 278 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~F~sf~~-rd~~~~~l~ 278 (362)
+++ .-..+|-|..+-. |-+-++.|.
T Consensus 108 CKD-------------mr~lR~~fk~~~q~r~~~~e~L~ 133 (717)
T KOG4471|consen 108 CKD-------------MRNLRCAFKQEEQCRRDWFERLN 133 (717)
T ss_pred ecc-------------ccceeeecCcccccHHHHHHHHH
Confidence 654 3567888888854 324444443
No 164
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.02 E-value=4.7 Score=32.50 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=46.4
Q ss_pred cceeEEEecceEEEeecCCCceeEEEeecccceEEEEecccc-ccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeec
Q 018029 191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF-INPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN 269 (362)
Q Consensus 191 ~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~sf~~ 269 (362)
-+|++.+...-+=||-+. ..+.-+.|||++|..|--..... +.+--.|.|.+ +-+|.|+|--+
T Consensus 23 ~~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~---------------~gk~~FaSkds 86 (122)
T COG4687 23 EYGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDT---------------QGKVRFASKDS 86 (122)
T ss_pred hcCeEEEcccceeecCCC-ChhheeEecHHHhheeheeehhhhhcceEEEEEcC---------------CceEEEEeCCc
Confidence 359999998877786554 34666899999999876665443 77877788843 34999998654
No 165
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=76.41 E-value=8.5 Score=33.75 Aligned_cols=53 Identities=15% Similarity=0.304 Sum_probs=39.4
Q ss_pred eeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC-----CCCceeEEEEEEecc
Q 018029 49 FSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-----WKSTVLGSVIVTVES 101 (362)
Q Consensus 49 rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~-----~~ddfIG~~~i~L~~ 101 (362)
-+.++..+.+|.|++++.+.++. +...|.|++|+.+.. .....+|-+.++|-+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44555555899999999999973 355699999997633 235688888888876
No 166
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=76.00 E-value=11 Score=33.40 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=41.1
Q ss_pred eEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC------CceeEEEEEEecc
Q 018029 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK------STVLGSVIVTVES 101 (362)
Q Consensus 47 ~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~------ddfIG~~~i~L~~ 101 (362)
...|.+...+.+|.|.+++.+.++. ....|.|+.|+.+...+ ...+|-+.++|-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4477888889999999999999873 24569999999653222 2467877777765
No 167
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.12 E-value=1.3 Score=46.39 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=61.4
Q ss_pred CCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEeccC---CCcceE
Q 018029 33 GTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQTGAV 108 (362)
Q Consensus 33 g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l---~~~~~~ 108 (362)
..-|||+.+.++.. ...+.+...+..|.|+++|..++.. ...+.+.||.......+.+...+++..+++ ......
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~ 104 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL 104 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence 34689999988643 3355566788999999999999665 566788888876544454444444444443 234567
Q ss_pred EEEccCCCCeeEEEEEEe
Q 018029 109 WYTLDSPSGQVCLHIKTI 126 (362)
Q Consensus 109 w~~L~~~~G~i~l~l~~~ 126 (362)
|..+.+ .|++...+.+.
T Consensus 105 w~~~~~-~g~~~~~~~~~ 121 (694)
T KOG0694|consen 105 WVLIEE-LGTLLKPAALT 121 (694)
T ss_pred cccccc-ccceeeeeccc
Confidence 888776 57766555543
No 168
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=69.14 E-value=39 Score=32.87 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=58.3
Q ss_pred ceeEEEecceEEEeecCCCceeEEEeecccceEEEEecc-ccc-c--CcEEEEEecCCCCCCCCCCCCCCCceeEEEeee
Q 018029 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH-AFI-N--PAITIILRMGAGGHGVPPLGSPDGRVRYKFASF 267 (362)
Q Consensus 192 ~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~-~~~-~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~sf 267 (362)
.|+|++|+-.+.|+|.-- ....+.|=|.-|..|+-... +.+ + .|+.|.++-+ +.+-.|.|+..
T Consensus 42 ~G~l~vTNLR~iW~s~~~-~r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~------------~~rfEFiFt~~ 108 (339)
T PF07289_consen 42 RGRLVVTNLRLIWHSLKR-PRINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN------------NTRFEFIFTNL 108 (339)
T ss_pred eeEEEEEeeeeEEeccCC-CceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC------------CceEEEEeccC
Confidence 399999999999999753 34778888888888776642 222 2 3888887643 35566677755
Q ss_pred ech---HHHHHHHHHHHHHHHH
Q 018029 268 WNR---NHALRQLQRTAKNYHT 286 (362)
Q Consensus 268 ~~r---d~~~~~l~~~~~~~~~ 286 (362)
... ...|..+..+|++|..
T Consensus 109 ~~~~~~~~lf~~v~~v~raY~t 130 (339)
T PF07289_consen 109 SPNSPRQRLFTSVQAVYRAYET 130 (339)
T ss_pred CCCCccchHHHHHHHHHHHHHH
Confidence 422 2569999999998864
No 169
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=69.03 E-value=13 Score=26.27 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=29.8
Q ss_pred eeEEEecceEEEeecCCCceeEEEeecccceEEEE
Q 018029 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR 227 (362)
Q Consensus 193 G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k 227 (362)
|++++|.-.+++||..- ....+.|||..|.+++.
T Consensus 21 G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~~ 54 (55)
T smart00683 21 GVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVRV 54 (55)
T ss_pred eEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEEe
Confidence 99999999999999874 46789999999998853
No 170
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=68.34 E-value=21 Score=31.77 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=39.9
Q ss_pred eEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC--C-------CCceeEEEEEEecc
Q 018029 47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII--W-------KSTVLGSVIVTVES 101 (362)
Q Consensus 47 ~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~--~-------~ddfIG~~~i~L~~ 101 (362)
...|.+...+.+|.|.+++.+.++. ....|.|+.|+.+.. . ....+|-+.++|-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4477888888999999999999873 345699999997621 1 12456766666654
No 171
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=64.23 E-value=3.7 Score=44.28 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=54.3
Q ss_pred CCCCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEE
Q 018029 7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY 81 (362)
Q Consensus 7 ~~~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~ 81 (362)
+.+...+|.+.+.+.+|..|.. ...-||...++ ..+..|.++.++..|.|+++++.++-+ .+.++++.|
T Consensus 752 ~eSpl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~ 825 (1112)
T KOG4269|consen 752 DESPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKT 825 (1112)
T ss_pred ccCcccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhh
Confidence 3344668999999999998853 34678887764 345589999999999999999988865 344557777
Q ss_pred EcC
Q 018029 82 DWD 84 (362)
Q Consensus 82 D~d 84 (362)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 655
No 172
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=61.48 E-value=36 Score=27.39 Aligned_cols=84 Identities=12% Similarity=0.030 Sum_probs=39.2
Q ss_pred EEEEEE-CCeeEeeccccCCCCCeeccEEEEEecCC--------CcEEEEEEEEcCCCCCCceeEEEEEEeccC----CC
Q 018029 38 YAIITC-GSEKRFSSMVPGSRYPMWGEEFNFSVDEL--------PVQIIVTIYDWDIIWKSTVLGSVIVTVESE----GQ 104 (362)
Q Consensus 38 yv~i~l-~~~~~rT~~i~~t~nP~W~e~f~f~v~~~--------~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l----~~ 104 (362)
||.+.. +-+.+.|.++. +.+|.++-+-.+.+... ...+.++++..- ......+|.+++++.++ +.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCc
Confidence 445444 34555666665 88999998877777521 356999999866 33468999999999986 21
Q ss_pred cceEEEEccCCCCeeEEEE
Q 018029 105 TGAVWYTLDSPSGQVCLHI 123 (362)
Q Consensus 105 ~~~~w~~L~~~~G~i~l~l 123 (362)
.......|.+.+|+..+.+
T Consensus 80 ~i~~~~~l~g~~~~~~g~l 98 (107)
T PF11618_consen 80 RIHGSATLVGVSGEDFGTL 98 (107)
T ss_dssp -EEEEEEE-BSSS-TSEEE
T ss_pred eEEEEEEEeccCCCeEEEE
Confidence 2334445544444433333
No 173
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=56.98 E-value=77 Score=23.42 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=38.3
Q ss_pred ecceEEEeecCCCceeEEEeecccceEEEEeccccccC-----cEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHH
Q 018029 198 SAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-----AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNH 272 (362)
Q Consensus 198 s~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~ 272 (362)
...++.-++-++ .. .||+.+|..|++.++....| .|+|...+ ......|=.++++
T Consensus 6 ~~~~L~I~~G~~--~~--~I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~~----------------~~~i~IsP~~~~~ 65 (74)
T PF06713_consen 6 EDDYLIIKCGFF--KK--KIPIEDIRSIRPTKNPLSSPALSLDRLEIYYGK----------------YKSILISPKDKEE 65 (74)
T ss_pred eCCEEEEEECCc--cc--EEEhHHccEEEecCCccccccccccEEEEEECC----------------CCEEEEECCCHHH
Confidence 444555555422 22 29999999999997544443 57776521 2346777777777
Q ss_pred HHHHHHH
Q 018029 273 ALRQLQR 279 (362)
Q Consensus 273 ~~~~l~~ 279 (362)
-.+.|++
T Consensus 66 FI~~L~k 72 (74)
T PF06713_consen 66 FIAELQK 72 (74)
T ss_pred HHHHHHh
Confidence 6666543
No 174
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=50.98 E-value=2.5e+02 Score=27.56 Aligned_cols=98 Identities=11% Similarity=0.242 Sum_probs=63.9
Q ss_pred EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCC--eeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYP--MWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92 (362)
Q Consensus 15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP--~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI 92 (362)
.|.|.+-+-.++ +-...-|+.+..+....+|..+.-+..- .-.+.....+..-+..|++.+|-.... +..-|
T Consensus 59 ~LLVeI~EI~~i-----~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hI 132 (508)
T PTZ00447 59 YLLVKINEIFNI-----NKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHI 132 (508)
T ss_pred eEEEEehhhhcc-----ccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEE
Confidence 345666554444 2235678889999888888666543332 223444444444567799999987644 56789
Q ss_pred EEEEEEeccC----CCcceEEEEccCCCCee
Q 018029 93 GSVIVTVESE----GQTGAVWYTLDSPSGQV 119 (362)
Q Consensus 93 G~~~i~L~~l----~~~~~~w~~L~~~~G~i 119 (362)
|.+.+.+..- .-+...||.+.. .|+.
T Consensus 133 gdI~InIn~dIIdk~FPKnkWy~c~k-DGq~ 162 (508)
T PTZ00447 133 GQIKIDINASVISKSFPKNEWFVCFK-DGQE 162 (508)
T ss_pred EEEEecccHHHHhccCCccceEEEec-CCce
Confidence 9999999862 456789999953 4543
No 175
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=49.86 E-value=16 Score=39.72 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=63.7
Q ss_pred CCcEEEEEECCee-EeeccccCC-CCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEE
Q 018029 35 SDPYAIITCGSEK-RFSSMVPGS-RYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWY 110 (362)
Q Consensus 35 sDPyv~i~l~~~~-~rT~~i~~t-~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~ 110 (362)
.++|+.+.+.... .+|....+. .+|.|.+.|...+......+.+++-+.+..+....+|.+.++...+ +.....|+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~ 217 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWF 217 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcccccccee
Confidence 4889999886544 477777766 7899999998888777788999998888777678999999998887 46778899
Q ss_pred Ecc
Q 018029 111 TLD 113 (362)
Q Consensus 111 ~L~ 113 (362)
.+.
T Consensus 218 ~Il 220 (887)
T KOG1329|consen 218 PIL 220 (887)
T ss_pred eee
Confidence 875
No 176
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=48.07 E-value=34 Score=28.11 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=45.0
Q ss_pred eeeccccccceeeccC----------CCcceeeeehhhhhhccccc---ee---EEEecceEEEeecCCCce---eEEEe
Q 018029 157 VVHQKPGPLQTIFNLL----------PDEFVELSYSCVIERSFLYH---GR---MYVSAWHICFHSNAFSRQ---MKVII 217 (362)
Q Consensus 157 ~~~~k~~~f~~~F~lp----------~~E~l~~~~~c~l~~~~~~~---G~---lyis~~~~cF~S~~~g~~---~k~~i 217 (362)
+...+.++|-++.-.+ ..+++.++++|.|...+.+. +. ......+.+|+.+.++.. -.+.|
T Consensus 32 ~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i 111 (133)
T cd04009 32 DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFL 111 (133)
T ss_pred CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEE
Confidence 3345667776665332 23567788889998743322 10 112234456766655532 35689
Q ss_pred ecccceEEEEecccc
Q 018029 218 PIGDIDEIQRSQHAF 232 (362)
Q Consensus 218 p~~di~~i~k~~~~~ 232 (362)
|+.++..++-...+.
T Consensus 112 ~l~~l~~~~~~~~~~ 126 (133)
T cd04009 112 PLNDIPGVEDTSSAQ 126 (133)
T ss_pred eHHHCCccccccccc
Confidence 999999988776553
No 177
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=44.13 E-value=49 Score=26.50 Aligned_cols=68 Identities=13% Similarity=0.254 Sum_probs=33.7
Q ss_pred ceeeccccccceeeccCC------Ccceeeeehhhhhhccccc---eeEE-EecceEEEeecCCCcee---EEEeecccc
Q 018029 156 TVVHQKPGPLQTIFNLLP------DEFVELSYSCVIERSFLYH---GRMY-VSAWHICFHSNAFSRQM---KVIIPIGDI 222 (362)
Q Consensus 156 k~~~~k~~~f~~~F~lp~------~E~l~~~~~c~l~~~~~~~---G~ly-is~~~~cF~S~~~g~~~---k~~ip~~di 222 (362)
.+...+++||-+++-+|. .....++.++.|...+.+. ..+. ....+.+++.+.++... .+.||+.++
T Consensus 31 ~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~ 110 (124)
T cd08385 31 MDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV 110 (124)
T ss_pred ccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcc
Confidence 333456677777765443 2445666777776633222 1111 12333455554444322 456666665
Q ss_pred e
Q 018029 223 D 223 (362)
Q Consensus 223 ~ 223 (362)
.
T Consensus 111 ~ 111 (124)
T cd08385 111 D 111 (124)
T ss_pred c
Confidence 3
No 178
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=41.81 E-value=38 Score=30.78 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=28.4
Q ss_pred eeEEEeecccceEEEEeccccccCcEEEEEecC
Q 018029 212 QMKVIIPIGDIDEIQRSQHAFINPAITIILRMG 244 (362)
Q Consensus 212 ~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~ 244 (362)
...+.||+.||.+|++.+..+..+-|+++++.|
T Consensus 111 ~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG 143 (213)
T PF12068_consen 111 SYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDG 143 (213)
T ss_pred ceEEEEEhhheeeEEecCCCCCceEEEEEecCC
Confidence 446899999999999999877777799999875
No 179
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=39.66 E-value=1.8e+02 Score=22.59 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=43.8
Q ss_pred ceeEEEecceEEEeecCCCceeEEEeecccceEEEEecc-ccccC--cEEEEEecCCCCCCCCCCCCCCCceeEEEeeee
Q 018029 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH-AFINP--AITIILRMGAGGHGVPPLGSPDGRVRYKFASFW 268 (362)
Q Consensus 192 ~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~-~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~sf~ 268 (362)
+|-||...+.+-|-.. .--++||++||+.|.=+.. ..-.- .+.|++++ .+...+.|++.-
T Consensus 12 ~g~L~pl~~~l~f~~~----kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~-------------~~~~~~~fs~I~ 74 (95)
T PF08512_consen 12 EGFLYPLEKCLLFGLE----KPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKD-------------YEGPPHEFSSID 74 (95)
T ss_dssp EEEEEEESSEEEEECS----SS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT--------------TS-EEEEEEEE
T ss_pred CEEEEEccceEEEecC----CCeEEEEhhHeeEEEEEecccCcceEEEEEEEEec-------------CCCCcEEEeeEC
Confidence 4899999987766222 2237999999999887663 22222 57777743 134699999875
Q ss_pred chHHHHHHHHHHHH
Q 018029 269 NRNHALRQLQRTAK 282 (362)
Q Consensus 269 ~rd~~~~~l~~~~~ 282 (362)
|++ ++.|.+.++
T Consensus 75 -~~e-~~~l~~~l~ 86 (95)
T PF08512_consen 75 -REE-YDNLKDFLK 86 (95)
T ss_dssp -GGG-HHHHHHHHH
T ss_pred -HHH-HHHHHHHHH
Confidence 443 345544443
No 180
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=36.86 E-value=77 Score=27.99 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=36.3
Q ss_pred cceEE-EeecCCCce--eEEEeecccceEEEEeccccccC--cEEEEEecCCCCCCCCCC
Q 018029 199 AWHIC-FHSNAFSRQ--MKVIIPIGDIDEIQRSQHAFINP--AITIILRMGAGGHGVPPL 253 (362)
Q Consensus 199 ~~~~c-F~S~~~g~~--~k~~ip~~di~~i~k~~~~~~~~--~i~i~~~~~~~~~~~~~~ 253 (362)
...+| |++-.+|+. ..+.+|++||++|+-+-.-.++| .+.+.++. |+..|+
T Consensus 96 ~g~v~ifRwGFPGKnR~I~l~~~~~dI~sIrv~i~eg~nprr~lyl~~k~----~~~IPL 151 (180)
T PF02392_consen 96 EGIVRIFRWGFPGKNRRIELRYPLKDIQSIRVEIKEGFNPRRVLYLRTKG----QRDIPL 151 (180)
T ss_pred CCEEEEEecCCCCCCeEEEEEEehHHeEEEEEEEccCCCCcceEEEEecC----CcccCC
Confidence 33444 888899976 45789999999998887777888 45555542 555555
No 181
>PF04386 SspB: Stringent starvation protein B; InterPro: IPR007481 Escherichia coli stringent starvation protein B (SspB), is thought to enhance the specificity of degradation of tmRNA-tagged proteins by the ClpXP protease. The tmRNA tag, also known as ssrA, is an 11-aa peptide added to the C terminus of proteins stalled during translation, targets proteins for degradation by ClpXP and ClpAP. SspB is a cytoplasmic protein that specifically binds to residues 1-4 and 7 of the tag. Binding of SspB enhances degradation of tagged proteins by ClpX, and masks sequence elements important for ClpA interactions, inhibiting degradation by ClpA []. However, more recent work has cast doubt on the importance of SspB in wild-type cells []. SspB is encoded in an operon whose synthesis is stimulated by carbon, amino acid, and phosphate starvation. SspB may play a special role during nutrient stress, for example by ensuring rapid degradation of the products of stalled translation, without causing a global increase in degradation of all ClpXP substrates [].; PDB: 2NYS_A 2QAZ_D 2QAS_A 1OX9_A 1OX8_A 1YFN_C 1TWB_B 1OU9_C 1OU8_B 1ZSZ_B ....
Probab=34.73 E-value=72 Score=27.38 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=32.7
Q ss_pred eeEEEecceEEEeecCCCceeEEEeecccceEEEEec
Q 018029 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229 (362)
Q Consensus 193 G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~ 229 (362)
.+|.+...++.|...+-|...+++|||.-|..|.-..
T Consensus 67 ~~L~v~~d~i~f~arF~G~~~~i~VP~~AV~aiya~e 103 (155)
T PF04386_consen 67 RDLSVDNDAISFTARFGGVPESIYVPFSAVLAIYARE 103 (155)
T ss_dssp EEEEE-SSEEEEEEEETTEEEEEEEEGGGEEEEEETT
T ss_pred CCcEEECCEEEEEEEECCEEEEEEEhHHhhheeeccc
Confidence 6899999999999999999999999999999987544
No 182
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=34.27 E-value=99 Score=26.52 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=24.6
Q ss_pred ccCCCceeeccccccceeeccCC--------Ccceeeeehhhhhhccc
Q 018029 151 DKQGPTVVHQKPGPLQTIFNLLP--------DEFVELSYSCVIERSFL 190 (362)
Q Consensus 151 ~kl~~k~~~~k~~~f~~~F~lp~--------~E~l~~~~~c~l~~~~~ 190 (362)
.++.+.+....+++|-++.-++. .+++.++.++.|...+.
T Consensus 37 ~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~ 84 (162)
T cd04020 37 KNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFV 84 (162)
T ss_pred eCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEE
Confidence 34444455567788888754432 24566777888877543
No 183
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=31.24 E-value=3.3e+02 Score=28.94 Aligned_cols=95 Identities=18% Similarity=0.298 Sum_probs=65.4
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC---CCCcee
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII---WKSTVL 92 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~---~~ddfI 92 (362)
+.|.|.+-.+|+....+ .=.||.+.+.+.+.+|.-.. ...|.|+..=.|....+...+++.+|-.... -.|.-+
T Consensus 343 mevvvmevqglksvapn--rivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestgvlaledkel 419 (1218)
T KOG3543|consen 343 MEVVVMEVQGLKSVAPN--RIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKEL 419 (1218)
T ss_pred eeEEEeeeccccccCCC--eeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhh
Confidence 55777888888765432 23799999988887776544 3469999887777766666678888875421 135678
Q ss_pred EEEEEEeccCCCcceEEEEcc
Q 018029 93 GSVIVTVESEGQTGAVWYTLD 113 (362)
Q Consensus 93 G~~~i~L~~l~~~~~~w~~L~ 113 (362)
|.+-+.-..-......|+.+.
T Consensus 420 grvil~ptpns~ks~ewh~mt 440 (1218)
T KOG3543|consen 420 GRVILQPTPNSAKSPEWHTMT 440 (1218)
T ss_pred CeEEEecCCCCcCCccceeee
Confidence 887776655555567788874
No 184
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=30.50 E-value=61 Score=29.63 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=28.4
Q ss_pred ceeEEEecceEEEeecCCCceeEEEeecccceEEEEe
Q 018029 192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228 (362)
Q Consensus 192 ~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~ 228 (362)
.||+.+++..++|-. ..-|..||+++|.+|...
T Consensus 27 ~~rIiLs~~rlvl~~----~~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 27 KGRIILSNDRLVLAF----NDGKITIPLSSIEDIGVR 59 (221)
T ss_pred EEEEEEecCEEEEEc----CCCeEEEecceeEecccc
Confidence 499999999999997 245679999999999875
No 185
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=28.66 E-value=2e+02 Score=31.76 Aligned_cols=67 Identities=27% Similarity=0.546 Sum_probs=43.2
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCcEEEEEEC----Ce----eEeeccccCCCCCeeccEEEEEec--CC--CcEEEEEEE
Q 018029 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG----SE----KRFSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIY 81 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~----~~----~~rT~~i~~t~nP~W~e~f~f~v~--~~--~~~L~~~V~ 81 (362)
..++|+++.+.++. .....|-+|.|..+ .. ...|..+..+.+|.||+...|++. +. ...|.+.||
T Consensus 343 ~~frI~l~~is~~n---~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVN---LPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccC---CCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 34667777766542 23345666666652 22 235555566889999999988875 32 456888888
Q ss_pred Ec
Q 018029 82 DW 83 (362)
Q Consensus 82 D~ 83 (362)
..
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 75
No 186
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=28.45 E-value=2.2e+02 Score=20.33 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=36.5
Q ss_pred EEEecceEEEeecCCCceeEEEeecccceEEEEecccc--cc--CcEEEEEecC
Q 018029 195 MYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF--IN--PAITIILRMG 244 (362)
Q Consensus 195 lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~--~~--~~i~i~~~~~ 244 (362)
..++...+...+-+++ .+...||+..|.+|+-+++.+ .+ .+|.+.+..|
T Consensus 6 y~i~~~~l~i~~G~~~-~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~ 58 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFS-KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGG 58 (80)
T ss_pred EEEECCEEEEEECeEE-EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCC
Confidence 6678888888988876 555899999999999887532 22 2677776543
No 187
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=26.71 E-value=15 Score=38.52 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=50.8
Q ss_pred eEEEEEEEeeecCCCCC----CCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC--CCcEEEEEEEEcCCCC
Q 018029 14 YLIKLELLAAKNLIGAN----LNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW 87 (362)
Q Consensus 14 ~~L~V~Vi~A~~L~~~d----~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~--~~~~L~~~V~D~d~~~ 87 (362)
|...++++.|.++++.- ..-+.+|+++..++.+..||+....+.+|.|||. .++..+ ....|...+-+++.+.
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~~ 358 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCELD 358 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccccc
Confidence 44445566666664321 1235689999999999999999999999999998 666543 2344555555555444
Q ss_pred CCc
Q 018029 88 KST 90 (362)
Q Consensus 88 ~dd 90 (362)
-+|
T Consensus 359 lnd 361 (975)
T KOG2419|consen 359 LND 361 (975)
T ss_pred ccc
Confidence 333
No 188
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.23 E-value=63 Score=34.21 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=39.1
Q ss_pred eeccccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcCCCCCCceeEEEEEEecc
Q 018029 49 FSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWDIIWKSTVLGSVIVTVES 101 (362)
Q Consensus 49 rT~~i~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~ 101 (362)
+|+.+.-...=.|||...+.+. + .+..+.+++||.....+-.|+|.+++.+-.
T Consensus 67 ~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 67 RTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 4443332222359999999875 3 367899999999887788899999998865
No 189
>PRK11798 ClpXP protease specificity-enhancing factor; Provisional
Probab=25.82 E-value=55 Score=27.61 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=33.6
Q ss_pred eeEEEecceEEEeecCCCceeEEEeecccceEEEEec
Q 018029 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229 (362)
Q Consensus 193 G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~ 229 (362)
+.|.+.+.++.|...+-|....+.||+..|..|.-..
T Consensus 59 ~~L~i~nd~I~F~ARFgG~~~~i~VP~~AV~aIyArE 95 (138)
T PRK11798 59 GNLQLGNDAISFNARFGGVPRQIYVPVAAVLAIYARE 95 (138)
T ss_pred cCeEEeccEEEEEEEECCEEEEEEEeHHHhhhhhhhc
Confidence 7889999999999999999999999999999986544
No 190
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=24.67 E-value=44 Score=25.12 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=13.8
Q ss_pred CCceeEEEeecccceEE
Q 018029 209 FSRQMKVIIPIGDIDEI 225 (362)
Q Consensus 209 ~g~~~k~~ip~~di~~i 225 (362)
|+++.-++|||++|..|
T Consensus 51 ~~~~~~~~Ipw~~I~kI 67 (76)
T TIGR02888 51 FSKGEEIEIPWDAIKKI 67 (76)
T ss_pred ecCCcEEEEEhhhccEE
Confidence 35566699999999887
No 191
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=23.80 E-value=4.7e+02 Score=22.46 Aligned_cols=79 Identities=11% Similarity=0.160 Sum_probs=52.4
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEC----------Ce-eEeeccccC-----CCCCeeccEEEEEec--CC--CcE
Q 018029 16 IKLELLAAKNLIGANLNGTSDPYAIITCG----------SE-KRFSSMVPG-----SRYPMWGEEFNFSVD--EL--PVQ 75 (362)
Q Consensus 16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~----------~~-~~rT~~i~~-----t~nP~W~e~f~f~v~--~~--~~~ 75 (362)
+.-.|.+|.+.. .++-||...+. .. ...|.+... +-.-.|+-.|.+.+. .+ =.+
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 344567777543 34678887761 22 345555542 233579988888775 22 136
Q ss_pred EEEEEEEcCCCCCCceeEEEEEEec
Q 018029 76 IIVTIYDWDIIWKSTVLGSVIVTVE 100 (362)
Q Consensus 76 L~~~V~D~d~~~~ddfIG~~~i~L~ 100 (362)
|.|+||..|..+++...|-..+.|-
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeC
Confidence 9999999999999999988777763
No 192
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=22.75 E-value=2.5e+02 Score=25.99 Aligned_cols=82 Identities=17% Similarity=0.189 Sum_probs=56.0
Q ss_pred ceeEEEecceEEEeecCCC-ceeEEEeecccceEEEEeccccccC--cEEEEEecCCCCCCCCCCCCCCCceeEEEeeee
Q 018029 192 HGRMYVSAWHICFHSNAFS-RQMKVIIPIGDIDEIQRSQHAFINP--AITIILRMGAGGHGVPPLGSPDGRVRYKFASFW 268 (362)
Q Consensus 192 ~G~lyis~~~~cF~S~~~g-~~~k~~ip~~di~~i~k~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~sf~ 268 (362)
.|.||+|...+.|-|+-.. +-..+.+||.-+.+++-++..+--+ ..+|..--|.| -+-...|-...
T Consensus 48 kGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~klnQPvF~aNyikGtV~pvpgGg-----------~~g~as~Kl~F 116 (261)
T KOG3294|consen 48 KGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVKLNQPVFGANYIKGTVQPVPGGG-----------WEGEASFKLTF 116 (261)
T ss_pred eeeEEeecceEEEecCCCCcchhhhcchhhhhhhceecCcccccceeeeeEeecCCCC-----------ccceeEEEEEe
Confidence 5999999999999987643 3345899999999999888766544 33444333333 23355666666
Q ss_pred chHHHHHHHHHHHHHH
Q 018029 269 NRNHALRQLQRTAKNY 284 (362)
Q Consensus 269 ~rd~~~~~l~~~~~~~ 284 (362)
++.-|...-+.+++..
T Consensus 117 ~~GG~ieFgq~~l~~~ 132 (261)
T KOG3294|consen 117 NEGGCIEFGQLLLQAA 132 (261)
T ss_pred cCCCchhHHHHHHHHH
Confidence 7777776666666544
No 193
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=22.32 E-value=98 Score=21.46 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=9.9
Q ss_pred ceeEEEeeeechH
Q 018029 259 RVRYKFASFWNRN 271 (362)
Q Consensus 259 ~~~~~F~sf~~rd 271 (362)
++.|.|+||.-..
T Consensus 32 nktyefssfvlcg 44 (66)
T PF13082_consen 32 NKTYEFSSFVLCG 44 (66)
T ss_pred CceEEEEEEEEEc
Confidence 4689999997543
No 194
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=21.46 E-value=1.7e+02 Score=25.96 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=32.4
Q ss_pred cceEE-EeecCCCcee--EEEeecccceEEEEeccccccCcEEEEEe
Q 018029 199 AWHIC-FHSNAFSRQM--KVIIPIGDIDEIQRSQHAFINPAITIILR 242 (362)
Q Consensus 199 ~~~~c-F~S~~~g~~~--k~~ip~~di~~i~k~~~~~~~~~i~i~~~ 242 (362)
...+| |++-.+|+.. .+.+|++||++|+-+-.-.++|--.|.++
T Consensus 99 ~g~v~ifRwGFPGKnR~I~l~~pl~dI~sIrieikeGlnprr~iyL~ 145 (184)
T CHL00036 99 EGIVCIFRWGFPGKNRRIFLRFLIKDIQSIRIEVKEGLNPRRVLYLE 145 (184)
T ss_pred CCEEEEEecCCCCCceEEEEEeEhHHeEEEEEEEecCcCcccEEEEE
Confidence 33445 8888999865 56889999999998887788883334443
No 195
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=21.19 E-value=1.2e+02 Score=22.66 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=20.9
Q ss_pred CcEEEEEEEEcCCCCCCceeEEEEEE
Q 018029 73 PVQIIVTIYDWDIIWKSTVLGSVIVT 98 (362)
Q Consensus 73 ~~~L~~~V~D~d~~~~ddfIG~~~i~ 98 (362)
....+|++||.|....|++|+.+...
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEEC
Confidence 34467999999987789999987763
Done!