Query 018030
Match_columns 362
No_of_seqs 196 out of 1409
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 7.8E-52 1.7E-56 399.3 32.0 259 57-356 63-331 (365)
2 KOG0697 Protein phosphatase 1B 100.0 2.2E-52 4.7E-57 372.6 23.4 273 54-356 17-292 (379)
3 PTZ00224 protein phosphatase 2 100.0 2.5E-48 5.4E-53 376.2 31.3 258 51-357 14-273 (381)
4 KOG0698 Serine/threonine prote 100.0 3.8E-47 8.3E-52 364.5 30.6 252 61-358 42-307 (330)
5 PF00481 PP2C: Protein phospha 100.0 2.7E-48 5.8E-53 360.5 19.9 246 60-347 1-254 (254)
6 KOG0699 Serine/threonine prote 100.0 4E-45 8.8E-50 336.3 19.0 176 156-361 327-509 (542)
7 COG0631 PTC1 Serine/threonine 100.0 1.2E-43 2.6E-48 329.8 24.3 248 56-357 5-254 (262)
8 KOG0700 Protein phosphatase 2C 100.0 4.4E-43 9.6E-48 330.4 22.1 255 70-342 82-378 (390)
9 cd00143 PP2Cc Serine/threonine 100.0 2.4E-39 5.1E-44 298.5 31.2 251 60-354 2-254 (254)
10 smart00332 PP2Cc Serine/threon 100.0 7.6E-39 1.6E-43 295.9 32.3 250 58-352 5-255 (255)
11 PRK14559 putative protein seri 100.0 8.3E-38 1.8E-42 318.6 26.4 244 58-356 374-636 (645)
12 KOG1323 Serine/threonine phosp 100.0 2E-31 4.3E-36 243.7 20.7 238 86-357 143-489 (493)
13 KOG1379 Serine/threonine prote 100.0 1.9E-28 4.1E-33 224.3 21.3 209 72-353 90-329 (330)
14 KOG0618 Serine/threonine phosp 99.9 7.8E-23 1.7E-27 209.0 17.2 253 49-357 512-774 (1081)
15 PF13672 PP2C_2: Protein phosp 99.9 4.1E-21 8.9E-26 173.1 13.0 190 64-324 3-198 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 6.5E-17 1.4E-21 143.5 21.0 175 71-339 15-192 (193)
17 TIGR02865 spore_II_E stage II 99.6 4.3E-14 9.4E-19 149.2 23.7 193 67-354 561-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 1.9E-12 4.1E-17 114.6 22.6 177 85-354 2-192 (193)
19 COG2208 RsbU Serine phosphatas 98.4 0.00011 2.3E-09 72.0 23.6 189 72-355 161-366 (367)
20 PRK10693 response regulator of 81.1 40 0.00087 31.9 13.2 105 73-191 150-259 (303)
21 PF09436 DUF2016: Domain of un 44.0 14 0.0003 27.3 1.4 19 292-311 26-44 (72)
22 COG4079 Uncharacterized protei 33.3 3.6E+02 0.0078 24.9 8.8 55 162-218 2-56 (293)
23 COG3700 AphA Acid phosphatase 33.0 53 0.0012 28.8 3.4 49 294-342 71-130 (237)
24 smart00331 PP2C_SIG Sigma fact 28.1 3.8E+02 0.0081 22.8 8.9 67 287-354 23-94 (193)
25 TIGR00525 folB dihydroneopteri 26.1 2.8E+02 0.0062 21.9 6.5 58 299-356 41-101 (116)
26 cd00534 DHNA_DHNTPE Dihydroneo 26.0 2.3E+02 0.0051 22.5 6.0 58 299-356 42-102 (118)
27 KOG4398 Predicted coiled-coil 24.9 1.2E+02 0.0025 28.5 4.3 52 92-143 136-201 (359)
28 PRK05457 heat shock protein Ht 23.8 92 0.002 29.3 3.7 39 283-322 105-143 (284)
29 PF14014 DUF4230: Protein of u 23.0 3.9E+02 0.0084 22.1 7.2 39 281-319 76-114 (157)
30 PRK02391 heat shock protein Ht 22.6 75 0.0016 30.1 2.9 39 283-322 104-142 (296)
31 PRK03982 heat shock protein Ht 22.5 99 0.0021 29.1 3.7 38 283-321 96-133 (288)
32 PRK13846 putative glycerol-3-p 22.3 3.3E+02 0.0071 26.2 7.0 63 89-151 224-312 (316)
33 PF12095 DUF3571: Protein of u 22.0 2.6E+02 0.0056 21.2 5.0 54 293-346 9-72 (83)
34 PF05402 PqqD: Coenzyme PQQ sy 21.1 2.1E+02 0.0046 19.9 4.4 41 295-337 2-42 (68)
35 KOG0641 WD40 repeat protein [G 21.0 4.2E+02 0.0091 24.3 7.0 39 162-200 233-274 (350)
36 PRK11593 folB bifunctional dih 20.2 4.2E+02 0.0091 21.1 6.5 54 298-351 41-96 (119)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=7.8e-52 Score=399.31 Aligned_cols=259 Identities=30% Similarity=0.484 Sum_probs=225.1
Q ss_pred CCeeEEEEeccCCCCCCCceEEEeeCC----------CCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCC
Q 018030 57 AGIRWGSVSLQGLREEMEDGAVIQSDG----------LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGK 126 (362)
Q Consensus 57 ~~~~~~~~s~~G~R~~nED~~~~~~~~----------~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~ 126 (362)
..++++..|.+|.|+.|||++++..+. .....||||||||||+.+++|+++++.+.+.+.. .
T Consensus 63 ~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~--------~ 134 (365)
T PLN03145 63 PVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDE--------D 134 (365)
T ss_pred CceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhh--------c
Confidence 457889999999999999998875432 1235799999999999999999999999886531 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEeeCCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCC
Q 018030 127 DFDAIKKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQV 206 (362)
Q Consensus 127 ~~~~~~~~L~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~ 206 (362)
....++++|.++|.++|+.|....... ....+|||++++++.++++|+||+||||+|++|+|++++||.||++.+
T Consensus 135 ~~~~~~~al~~af~~~d~~~~~~~~~~-~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~---- 209 (365)
T PLN03145 135 FPREIEKVVSSAFLQTDTAFAEACSLD-ASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMC---- 209 (365)
T ss_pred cchhHHHHHHHHHHHHhHHHHhhhccc-cCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCC----
Confidence 234678899999999999987643322 334599999999999999999999999999999999999999999987
Q ss_pred CHhHHHHHHHcCCEEECCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEE
Q 018030 207 SLQEIRRIREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIF 286 (362)
Q Consensus 207 ~~~E~~Ri~~~gg~i~~~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~ 286 (362)
+.|++||+++||+|.++++.|.+.+||||||..+|..+. .....++++|++.
T Consensus 210 -~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~---------------------------~~~~~vs~ePdv~ 261 (365)
T PLN03145 210 -SKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKG---------------------------SDGGPLSAEPELM 261 (365)
T ss_pred -HHHHHHHHHcCCceecceECCcccccccccccccccccc---------------------------ccCCCcceEEEEE
Confidence 799999999999999999999999999999988763220 1123467899999
Q ss_pred EEEcCCCCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCC
Q 018030 287 QVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGY 356 (362)
Q Consensus 287 ~~~l~~~~d~lvL~SDGl~d~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~l~~ 356 (362)
.+++.++|+|||||||||||+|+++++++++++.+.+..+++.+|+.|+++|+++++.||||||||+|..
T Consensus 262 ~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~ 331 (365)
T PLN03145 262 TTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQS 331 (365)
T ss_pred EEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 9999999899999999999999999999999988888889999999999999999999999999999986
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-52 Score=372.58 Aligned_cols=273 Identities=30% Similarity=0.539 Sum_probs=245.5
Q ss_pred CCCCCeeEEEEeccCCCCCCCceEEEe---eCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q 018030 54 SGVAGIRWGSVSLQGLREEMEDGAVIQ---SDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDA 130 (362)
Q Consensus 54 ~~~~~~~~~~~s~~G~R~~nED~~~~~---~~~~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 130 (362)
.+...++||..|+||||-+|||++.+. ....+.|+||+|||||.|+..+.+|+.+|.+.+...-.-.-......-+.
T Consensus 17 G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~ 96 (379)
T KOG0697|consen 17 GEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVEN 96 (379)
T ss_pred CcCCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHH
Confidence 345789999999999999999998665 34467899999999999999999999999998875433221122345568
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEeeCCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCCCHhH
Q 018030 131 IKKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQE 210 (362)
Q Consensus 131 ~~~~L~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~~~E 210 (362)
.+.-|+..|.+.|+.+...........++|||++.+++....+|++|+||||++|+|+|++..-|.||.|++ |.|
T Consensus 97 ~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~-----p~E 171 (379)
T KOG0697|consen 97 VEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYL-----PKE 171 (379)
T ss_pred HHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCC-----hHH
Confidence 899999999999999988766666667799999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHcCCEEECCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEc
Q 018030 211 IRRIREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSL 290 (362)
Q Consensus 211 ~~Ri~~~gg~i~~~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l 290 (362)
++||+.|||.|-=.||+|.|+|+|||||+.||-.. ..++..++|+++|++..+..
T Consensus 172 keRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~-------------------------~kgp~eQlVSPEPev~~~~R 226 (379)
T KOG0697|consen 172 KERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVP-------------------------GKGPTEQLVSPEPEVYIIER 226 (379)
T ss_pred HHHHhcCCCeEEEEEecceeeeehhccCcccccCC-------------------------CCCchhcccCCCCceEEeec
Confidence 99999999999999999999999999999999433 67778899999999999999
Q ss_pred CCCCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCC
Q 018030 291 GSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGY 356 (362)
Q Consensus 291 ~~~~d~lvL~SDGl~d~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~l~~ 356 (362)
...|+||||++||+||.|+++|+.++++..|.-..+...+|+.+++..+-+|++||+|+|++-|.+
T Consensus 227 ~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~ 292 (379)
T KOG0697|consen 227 SEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPG 292 (379)
T ss_pred cccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecCC
Confidence 998899999999999999999999999999988999999999999999999999999999999864
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=2.5e-48 Score=376.16 Aligned_cols=258 Identities=31% Similarity=0.483 Sum_probs=218.4
Q ss_pred CCCCCCCCeeEEEEeccCCCCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q 018030 51 SSLSGVAGIRWGSVSLQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDA 130 (362)
Q Consensus 51 s~~~~~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 130 (362)
........+.+++.+.+|+|+.|||++++... +.+.+|||||||||..+|+++++.+.+.+..... ..
T Consensus 14 ~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~--~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~----------~~ 81 (381)
T PTZ00224 14 VDRAGNSIFRCASACVNGYRESMEDAHLLYLT--DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE----------PM 81 (381)
T ss_pred cccCCCccEEEEEEeCCCCCCCCCCeeEeccC--CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc----------cc
Confidence 34456788999999999999999999886543 3456999999999999999999999876533110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEee-CCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCCCHh
Q 018030 131 IKKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIG-RDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQ 209 (362)
Q Consensus 131 ~~~~L~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~-~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~~~ 209 (362)
..+.|.++|..+|+.++.. ...+|||++++++. ++++|++||||||+|++|+|++++||.||++.+ +.
T Consensus 82 ~~~~l~~a~~~~d~~i~~~------~~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~-----~~ 150 (381)
T PTZ00224 82 TDERMEELCLEIDEEWMDS------GREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNN-----PG 150 (381)
T ss_pred cHHHHHHHHHHHHHHHHhc------ccCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCC-----HH
Confidence 2345889999999999752 12469999988876 579999999999999999999999999999987 78
Q ss_pred HHHHHHHcCCEEECCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEE
Q 018030 210 EIRRIREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVS 289 (362)
Q Consensus 210 E~~Ri~~~gg~i~~~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~ 289 (362)
|+.||.++||.+..+|++|.+.+||||||..+|.+.. ....++.|+++|++..++
T Consensus 151 E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K~~~~-------------------------~~~~~~~v~~~Pdi~~~~ 205 (381)
T PTZ00224 151 ERQRIEACGGRVVSNRVDGDLAVSRAFGDRSFKVKGT-------------------------GDYLEQKVIAVPDVTHLT 205 (381)
T ss_pred HHhHHHHccCEeccccccCceeeecccCCcccccccc-------------------------cccccCcceeeeEEEEEE
Confidence 9999999999999999999999999999998885421 011235678999999999
Q ss_pred cCCCCeEEEEEcCCCcC-CCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCC
Q 018030 290 LGSDAEFVLLASDGLWD-YMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYA 357 (362)
Q Consensus 290 l~~~~d~lvL~SDGl~d-~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~l~~~ 357 (362)
+.++ |||||||||||| +++++++.+++.+.+.+..+++.+|+.|++.|+.+|+.||||||||++...
T Consensus 206 l~~~-D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~ 273 (381)
T PTZ00224 206 CQSN-DFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDG 273 (381)
T ss_pred CCCC-CEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCC
Confidence 9988 899999999999 899999999998777677899999999999999999999999999999753
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-47 Score=364.46 Aligned_cols=252 Identities=40% Similarity=0.589 Sum_probs=221.1
Q ss_pred EEEEeccCCCCCCCceEEEeeCC------CC-CeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHH
Q 018030 61 WGSVSLQGLREEMEDGAVIQSDG------LD-GFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKK 133 (362)
Q Consensus 61 ~~~~s~~G~R~~nED~~~~~~~~------~~-~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 133 (362)
.+..+.+|+|..|||++...... .. ...||||||||||..+|+|+.++|+..+.+.+... .....++.
T Consensus 42 ~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~-----~~~~~~~~ 116 (330)
T KOG0698|consen 42 GSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFP-----KDRQDVKD 116 (330)
T ss_pred eEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcc-----cchHHHHH
Confidence 44558888899999999876553 22 47899999999999999999999999998876632 22257899
Q ss_pred HHHHHHH-HHHHHHHHHHhhccccCCCCceEEEEEeeCC-EEEEEEeccccEEEEeCC-ceeeCCCCCcCCCCCCCCHhH
Q 018030 134 ALQEAFE-NVDMKLLNRLEMNAEEDESGATATVMFIGRD-ILFISHVGDCCVVLSRTG-KADVLTNPHRPYGSGQVSLQE 210 (362)
Q Consensus 134 ~L~~a~~-~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~-~l~~anvGDSr~~l~r~g-~~~~lt~dH~~~~~~~~~~~E 210 (362)
++.++|. ++|..+... ......+|||++++++.++ +||+||+||||++|++.| +.++||.||+|+. ++|
T Consensus 117 a~~~~F~~~~D~~~~~~---~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~-----~~E 188 (330)
T KOG0698|consen 117 ALRRAFLTKTDSEFLEK---REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDR-----EDE 188 (330)
T ss_pred HHHHHHHHHHHHHHHhh---ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCc-----HHH
Confidence 9999999 699999875 2234678888888888755 999999999999999866 8999999999987 899
Q ss_pred HHHHHHcCCEEEC----CeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEE
Q 018030 211 IRRIREAGGWISN----GRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIF 286 (362)
Q Consensus 211 ~~Ri~~~gg~i~~----~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~ 286 (362)
+.||.++||+|.. .|++|.|++||||||..+| .++|+++|++.
T Consensus 189 ~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k---------------------------------~~~v~a~Pei~ 235 (330)
T KOG0698|consen 189 RERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELK---------------------------------SQGVIAEPEIQ 235 (330)
T ss_pred HHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhc---------------------------------CCcEecCCceE
Confidence 9999999999984 3999999999999999987 36799999999
Q ss_pred EEEcCCCCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCc
Q 018030 287 QVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYAS 358 (362)
Q Consensus 287 ~~~l~~~~d~lvL~SDGl~d~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~l~~~~ 358 (362)
...+.+.|+||||+||||||.|+++|++++|+..+.....+..++..|.+.|..+++.||||||||.|....
T Consensus 236 ~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~ 307 (330)
T KOG0698|consen 236 QVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSP 307 (330)
T ss_pred EEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCcc
Confidence 999999889999999999999999999999998776677999999999999999999999999999998753
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=2.7e-48 Score=360.51 Aligned_cols=246 Identities=42% Similarity=0.613 Sum_probs=208.7
Q ss_pred eEEEEeccCCCCCCCceEEEeeCC-----CCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHH
Q 018030 60 RWGSVSLQGLREEMEDGAVIQSDG-----LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKA 134 (362)
Q Consensus 60 ~~~~~s~~G~R~~nED~~~~~~~~-----~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 134 (362)
.+++.+.+|+|+.|||.+++..+. .....+|+|||||||..+++++++.+.+.+...+... ....+.++
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~------~~~~~~~a 74 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFN------DGNDIEEA 74 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHH------TCHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccc------cccchhhc
Confidence 378899999999999999987733 3567899999999999999999999998777665532 11278999
Q ss_pred HHHHHHH-HHHHHHHHHhhccccCCCCceEEEEEeeCCEEEEEEeccccEEEEeCCcee-eCCCCCcCCCCCCCCHhHHH
Q 018030 135 LQEAFEN-VDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKAD-VLTNPHRPYGSGQVSLQEIR 212 (362)
Q Consensus 135 L~~a~~~-~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~~anvGDSr~~l~r~g~~~-~lt~dH~~~~~~~~~~~E~~ 212 (362)
|..+|.. ++..+....+.. ....+|||++++++.+++||+||+||||+|+++++... +||.||++.+ +.|+.
T Consensus 75 l~~a~~~~~~~~~~~~~~~~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~-----~~E~~ 148 (254)
T PF00481_consen 75 LRQAFLAFTDESLYSDSENN-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSN-----PDERE 148 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTS-----HHHHH
T ss_pred ccceeeeccccccccccccc-ccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccch-----hhccc
Confidence 9999999 888888743333 67789999999999999999999999999999999888 9999999987 89999
Q ss_pred HHHHcCCEEE-CCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEcC
Q 018030 213 RIREAGGWIS-NGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLG 291 (362)
Q Consensus 213 Ri~~~gg~i~-~~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~ 291 (362)
||+++||.+. .+|+.|.|++||||||..+|++. +++|+++|++..+++.
T Consensus 149 RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~------------------------------~~~v~~~P~i~~~~l~ 198 (254)
T PF00481_consen 149 RIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPG------------------------------KPGVIAEPDISEVDLT 198 (254)
T ss_dssp HHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCT------------------------------SSSSB---EEEEEEEB
T ss_pred eeeccccccccchhhhhccccccccccccccccc------------------------------cceeeeeccccccccc
Confidence 9999999999 89999999999999999998532 4689999999999999
Q ss_pred CCCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCe
Q 018030 292 SDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNI 347 (362)
Q Consensus 292 ~~~d~lvL~SDGl~d~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~~~DNi 347 (362)
++|+|||||||||||+++++++++++++.......++.+|+.|+++|+++|+.|||
T Consensus 199 ~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 199 PDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp TTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred ccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 99779999999999999999999999988777778999999999999999999997
No 6
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4e-45 Score=336.29 Aligned_cols=176 Identities=37% Similarity=0.660 Sum_probs=163.1
Q ss_pred cCCCCceEEEEEeeCCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCCCHhHHHHHHHcCCEEE-CCeecccccccc
Q 018030 156 EDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWIS-NGRICGDIAVSR 234 (362)
Q Consensus 156 ~~~~GsT~~~~~i~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~i~-~~rv~G~l~~tR 234 (362)
...+|||++||++.+.+||+||.||||++|+|+|+.+.++.||.|.. ..|..||.++||.|. +|||+|.|.++|
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPED-----evE~~RI~~AGG~vtlDGRVNGGLNLSR 401 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPED-----EVETNRIHAAGGQVTLDGRVNGGLNLSR 401 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCccc-----HHHHHHHHhcCCeEeecceecCccchhh
Confidence 45679999999999999999999999999999999999999999987 899999999999998 899999999999
Q ss_pred ccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEcCCCCeEEEEEcCCCcCCCChHHHH
Q 018030 235 AFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDYMNSSDAV 314 (362)
Q Consensus 235 alGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~d~l~~~~i~ 314 (362)
||||..||.++ .++...++|++-|+|....|++.|+|+||++||+|.+|+.++++
T Consensus 402 A~GDHaYK~N~-------------------------~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVV 456 (542)
T KOG0699|consen 402 AFGDHAYKKNQ-------------------------ELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVV 456 (542)
T ss_pred hhhhhhhhccc-------------------------CCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHH
Confidence 99999999877 44555889999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhc------CCCCCeEEEEEEcCCCcccC
Q 018030 315 KFVRNQLQQHGDVQLACEALAQAALDQ------HSQDNISIVIADLGYASVEL 361 (362)
Q Consensus 315 ~~v~~~l~~~~~~~~~a~~L~~~A~~~------~~~DNiTvivv~l~~~~~~~ 361 (362)
+||+..|.++.....+|+.|++..+.- -+.||+|||++.|++...|+
T Consensus 457 dFvr~~l~~n~~ls~iceeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk~~el 509 (542)
T KOG0699|consen 457 DFVRDLLAKNSSLSEICEELCDACLAPSTDGDGTGCDNMTVIITTFKRKSKEL 509 (542)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhhcCCCCCCCCcCCCcceEEEEEeccchhhc
Confidence 999999999999999999999999864 25799999999999766554
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-43 Score=329.84 Aligned_cols=248 Identities=26% Similarity=0.380 Sum_probs=209.7
Q ss_pred CCCeeEEEEeccCC-CCCCCceEEEeeCCCCC-eEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHH
Q 018030 56 VAGIRWGSVSLQGL-REEMEDGAVIQSDGLDG-FSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKK 133 (362)
Q Consensus 56 ~~~~~~~~~s~~G~-R~~nED~~~~~~~~~~~-~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 133 (362)
...+.++..+..|. |..|||++.+..+.... ..+|+|||||||+.+++++++.+++.+.+.+......... ..+.+
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~--~~~~~ 82 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLN--ESLEE 82 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccc--hhHHH
Confidence 35677788888886 88999999987643111 5699999999999999999999999999987753211111 11789
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEeeCCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCCCHhHHHH
Q 018030 134 ALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRR 213 (362)
Q Consensus 134 ~L~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~~~E~~R 213 (362)
.|.+++..++..+............+|||++++++.++++|+|||||||+|++|+|++++||.||++.+ ..+..+
T Consensus 83 ~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~-----~~~~~~ 157 (262)
T COG0631 83 LLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVN-----RLEQRG 157 (262)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHH-----HHHHhc
Confidence 999999999999998765556778999999999999999999999999999999999999999999975 566666
Q ss_pred HHHcCCEEECCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEcCCC
Q 018030 214 IREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSD 293 (362)
Q Consensus 214 i~~~gg~i~~~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~ 293 (362)
+...++.+..+|.+ .+|||||+..+ ..|++....+.++
T Consensus 158 ~~~~~~~~~~~~~~---~ltralG~~~~---------------------------------------~~p~~~~~~~~~~ 195 (262)
T COG0631 158 IITPEEARSHPRRN---ALTRALGDFDL---------------------------------------LEPDITELELEPG 195 (262)
T ss_pred CCCHHHHHhCccch---hhhhhcCCCcc---------------------------------------cceeEEEEEcCCC
Confidence 65555555555555 78899888643 4799999999999
Q ss_pred CeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCC
Q 018030 294 AEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYA 357 (362)
Q Consensus 294 ~d~lvL~SDGl~d~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~l~~~ 357 (362)
||+|||||||||.++++++.++++ ...+++.+++.|++.|+++++.||+|+|+|.+...
T Consensus 196 -d~llL~SDGl~d~v~~~~i~~il~----~~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~ 254 (262)
T COG0631 196 -DFLLLCSDGLWDVVSDDEIVDILK----NSETPQEAADKLIELALEGGGPDNITVVLVRLNGE 254 (262)
T ss_pred -CEEEEECCCCccCcCHHHHHHHHh----cCCCHHHHHHHHHHHHHhcCCCCceEEEEEEeecc
Confidence 999999999999999999999995 47899999999999999999999999999998754
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-43 Score=330.41 Aligned_cols=255 Identities=29% Similarity=0.444 Sum_probs=208.6
Q ss_pred CCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCC-----------------------
Q 018030 70 REEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGK----------------------- 126 (362)
Q Consensus 70 R~~nED~~~~~~~~~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~----------------------- 126 (362)
.+.-||++-+.....+++.|+||||||||.++++|++++|+.++...|+...+..+.
T Consensus 82 ~~~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 82 GKAEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred CCcccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 345689987777767899999999999999999999999999999777653222211
Q ss_pred --C-hhHHHHHHHHHHHHHHHHHHHHHhh----ccccCCCCceEEEEEeeCCEEEEEEeccccEEEEe---CC---ceee
Q 018030 127 --D-FDAIKKALQEAFENVDMKLLNRLEM----NAEEDESGATATVMFIGRDILFISHVGDCCVVLSR---TG---KADV 193 (362)
Q Consensus 127 --~-~~~~~~~L~~a~~~~~~~l~~~~~~----~~~~~~~GsT~~~~~i~~~~l~~anvGDSr~~l~r---~g---~~~~ 193 (362)
. ...+.++|.+||++++++|+..... .+....+|+||++.++.++.|||||+|||||+|.+ +| ..+|
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~q 241 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQ 241 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEe
Confidence 1 4678999999999999999876533 35667899999999999999999999999999974 34 4799
Q ss_pred CCCCCcCCCCCCCCHhHHHHHHHcCC----EEEC--CeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhh
Q 018030 194 LTNPHRPYGSGQVSLQEIRRIREAGG----WISN--GRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIF 267 (362)
Q Consensus 194 lt~dH~~~~~~~~~~~E~~Ri~~~gg----~i~~--~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~ 267 (362)
||.||+..+ ++|++||+..|- .|.+ +||.|.|++||||||.++|.++ |...-+...+
T Consensus 242 LS~dHn~~n-----e~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~------------~n~e~l~~~f 304 (390)
T KOG0700|consen 242 LSTDHNASN-----EDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPE------------FNQEPLLEKF 304 (390)
T ss_pred cChhhcccc-----HHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchh------------hccchhHhhc
Confidence 999999987 999999999983 4444 4999999999999999999655 3322222222
Q ss_pred hhhhcccCCCceEecceEEEEEcCCCCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 018030 268 CVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQH 342 (362)
Q Consensus 268 ~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~d~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~ 342 (362)
+. .....+|+++++|+++.++|++.|.||||+||||||+|+++|++++|..++....+-+.+|+.|+++|+.+.
T Consensus 305 r~-~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 305 RI-PYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred CC-CCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 23 333448999999999999999999999999999999999999999999877653444678899999987654
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.4e-39 Score=298.46 Aligned_cols=251 Identities=38% Similarity=0.588 Sum_probs=216.8
Q ss_pred eEEEEeccCCCCCCCceEEEeeCCC-CCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHH
Q 018030 60 RWGSVSLQGLREEMEDGAVIQSDGL-DGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEA 138 (362)
Q Consensus 60 ~~~~~s~~G~R~~nED~~~~~~~~~-~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~a 138 (362)
.++..+..|.|+.|||++++..... .++.+|+|||||||+..++++++.+.+.+.+.+..... .....+...|.++
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~ 78 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT---LSEEDIEEALRKA 78 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHH
Confidence 4567778888999999999876531 25689999999999999999999999999887764321 2357788999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCceEEEEEeeCCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCCCHhHHHHHHHcC
Q 018030 139 FENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAG 218 (362)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~g 218 (362)
|+.+++.+............+|||++++++.++.++++|+||||+|++|+++++++|.||++.+ +.+..||...+
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~-----~~~~~~i~~~~ 153 (254)
T cd00143 79 FLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVN-----EEERERIEKAG 153 (254)
T ss_pred HHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcC-----hHHHHHHHHcC
Confidence 9999999988665545667899999999999999999999999999999999999999999976 68999999999
Q ss_pred CEEECCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEc-CCCCeEE
Q 018030 219 GWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSL-GSDAEFV 297 (362)
Q Consensus 219 g~i~~~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l-~~~~d~l 297 (362)
|++...+..+...+||+||+..+| +++.+.|++..+++ .++ |+|
T Consensus 154 ~~~~~~~~~~~~~~t~~lG~~~~~----------------------------------~~~~~~~~~~~~~l~~~~-d~i 198 (254)
T cd00143 154 GRVSNGRVPGVLAVTRALGDFDLK----------------------------------PGVSAEPDVTVVKLTEDD-DFL 198 (254)
T ss_pred CcEEeCEEcCceeeccccCCcccc----------------------------------CCEEcCCeEEEEEeCCCC-cEE
Confidence 998888888999999999998765 33567899999999 777 999
Q ss_pred EEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEc
Q 018030 298 LLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADL 354 (362)
Q Consensus 298 vL~SDGl~d~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~l 354 (362)
|||||||||+++++++.+++.....+ .+++.+|+.|++.|..+++.||+|+||+.+
T Consensus 199 ll~SDG~~~~l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 199 ILASDGLWDVLSNQEAVDIVRSELAK-EDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred EEECCCCeeccChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 99999999999999999999642111 279999999999999999999999999875
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=7.6e-39 Score=295.90 Aligned_cols=250 Identities=41% Similarity=0.661 Sum_probs=215.9
Q ss_pred CeeEEEEeccCCCCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHH
Q 018030 58 GIRWGSVSLQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQE 137 (362)
Q Consensus 58 ~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 137 (362)
.+.++..+.+|.|..|||++++......+..+|+|||||||..+++++++.+.+.+.+..... ......+.+.|.+
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~ 80 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKH----KDELEDVEEALRK 80 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhc----ccchhHHHHHHHH
Confidence 456677778888999999999876533567899999999999999999999998877654321 1223568889999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCceEEEEEeeCCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCCCHhHHHHHHHc
Q 018030 138 AFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREA 217 (362)
Q Consensus 138 a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~ 217 (362)
++..++..+............+|||++++++..+++|++|+||||+|++|++++.++|.||++.+ ..|..||...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~-----~~~~~~i~~~ 155 (255)
T smart00332 81 AFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSN-----EDERARIEAA 155 (255)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcC-----HHHHHHHHHc
Confidence 99999999988665555567799999999999999999999999999999999999999999976 7899999999
Q ss_pred CCEEECCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEc-CCCCeE
Q 018030 218 GGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSL-GSDAEF 296 (362)
Q Consensus 218 gg~i~~~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l-~~~~d~ 296 (362)
++.+..++..+...+||++|+..+| +.+.+.|++...++ .++ |+
T Consensus 156 ~~~~~~~~~~~~~~lt~~~g~~~~~----------------------------------~~i~~~p~~~~~~~~~~~-d~ 200 (255)
T smart00332 156 GGFVINGRVNGVLALSRAIGDFFLK----------------------------------PYVSAEPDVTVVELTEKD-DF 200 (255)
T ss_pred CCEEECCeECCeEecccccCCHhhc----------------------------------CCeEeeeEEEEEEecCCC-cE
Confidence 9999999999999999999997665 55778999999996 777 99
Q ss_pred EEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Q 018030 297 VLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIA 352 (362)
Q Consensus 297 lvL~SDGl~d~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv 352 (362)
||||||||||+++++++.+++.+.... .+++.+|+.|++.|..+++.||+|+||+
T Consensus 201 ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 201 LILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred EEEECCccccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 999999999999999999999754322 3789999999999999999999999985
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=8.3e-38 Score=318.62 Aligned_cols=244 Identities=20% Similarity=0.233 Sum_probs=186.9
Q ss_pred CeeEEEEeccCC-CCCCCceEEEeeCC----------CCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCC
Q 018030 58 GIRWGSVSLQGL-REEMEDGAVIQSDG----------LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGK 126 (362)
Q Consensus 58 ~~~~~~~s~~G~-R~~nED~~~~~~~~----------~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~ 126 (362)
.+.++..|++|. |+.|||++.+.... .....+|+|||||||+.+++.|++.+++.+.+.+.... ...
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~--~~~ 451 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHW--QDE 451 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhh--ccc
Confidence 477899999997 99999998765321 11346999999999999988888888888776665321 111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcc--ccCCCCceEEEEEeeCCEEEEEEeccccEEEE-eCCceeeCCCCCcCCCC
Q 018030 127 DFDAIKKALQEAFENVDMKLLNRLEMNA--EEDESGATATVMFIGRDILFISHVGDCCVVLS-RTGKADVLTNPHRPYGS 203 (362)
Q Consensus 127 ~~~~~~~~L~~a~~~~~~~l~~~~~~~~--~~~~~GsT~~~~~i~~~~l~~anvGDSr~~l~-r~g~~~~lt~dH~~~~~ 203 (362)
....+.|+++|..+|+.|.+...+.. ....+|||++++++.++++|++||||||+|++ |+|++++||.||++.
T Consensus 452 --~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~-- 527 (645)
T PRK14559 452 --LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVG-- 527 (645)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHH--
Confidence 12357899999999999987654433 45579999999999999999999999999988 578999999999984
Q ss_pred CCCCHhHHHHHHHcCCEEE----CCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCce
Q 018030 204 GQVSLQEIRRIREAGGWIS----NGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLV 279 (362)
Q Consensus 204 ~~~~~~E~~Ri~~~gg~i~----~~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 279 (362)
..++ +.| +. .++. +...+|||||+...+
T Consensus 528 ----~~lv----~~G--i~~~~a~~~p-~~~~LTrALG~~~~~------------------------------------- 559 (645)
T PRK14559 528 ----QREI----QRG--VEPQIAYARP-DAYQLTQALGPRDNS------------------------------------- 559 (645)
T ss_pred ----HHHH----HhC--CCHHHHhcCc-ccceeeeccCCCCCC-------------------------------------
Confidence 2222 223 21 1222 346788888875332
Q ss_pred EecceEEEEEcCCCCeEEEEEcCCCcCC-CChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCC
Q 018030 280 IASPDIFQVSLGSDAEFVLLASDGLWDY-MNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGY 356 (362)
Q Consensus 280 ~~~p~i~~~~l~~~~d~lvL~SDGl~d~-l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~l~~ 356 (362)
..+|++..+.+.++ |+||||||||||+ +.+..+.+.+...+....+++++++.|++.|+++|+.||||+|||++..
T Consensus 560 ~l~Pdi~~~~L~~g-D~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~ 636 (645)
T PRK14559 560 AIQPDIQFLEIEED-TLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQYNGHDNITAILVRLKV 636 (645)
T ss_pred cccceEEEEEcCCC-CEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEecc
Confidence 13789999999988 9999999999995 3343444444455567779999999999999999999999999999974
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-31 Score=243.73 Aligned_cols=238 Identities=26% Similarity=0.401 Sum_probs=189.8
Q ss_pred CeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCc-----------------------c---------cCCCChhHHHH
Q 018030 86 GFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGL-----------------------L---------LSGKDFDAIKK 133 (362)
Q Consensus 86 ~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~-----------------------~---------~~~~~~~~~~~ 133 (362)
...+|-+||||.|..++-.+++.+.+.+.+.+..-. . ..-....-+..
T Consensus 143 ~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViG 222 (493)
T KOG1323|consen 143 DGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIG 222 (493)
T ss_pred cceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHH
Confidence 367999999999999999999988888777666200 0 00011345788
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEeeCCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCCCHhHHHH
Q 018030 134 ALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRR 213 (362)
Q Consensus 134 ~L~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~~~E~~R 213 (362)
+|+.||+..|++|.+ +.+.....+|||+++++.--++||+||.||||++++|+++++.|+++.+| +.|++|
T Consensus 223 AlEsAFqemDeqiar--er~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTP-------etERqR 293 (493)
T KOG1323|consen 223 ALESAFQEMDEQIAR--ERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTP-------ETERQR 293 (493)
T ss_pred HHHHHHHHHHHHHHH--HHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCc-------HHHHHH
Confidence 999999999999987 45566778999999999999999999999999999999999999999999 899999
Q ss_pred HHHcC--------C-----------------------------EE----E--------------CCeeccccccccccCC
Q 018030 214 IREAG--------G-----------------------------WI----S--------------NGRICGDIAVSRAFGD 238 (362)
Q Consensus 214 i~~~g--------g-----------------------------~i----~--------------~~rv~G~l~~tRalGd 238 (362)
|+..+ + |- . ..|+.+.+.|||.|||
T Consensus 294 lQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGD 373 (493)
T KOG1323|consen 294 LQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGD 373 (493)
T ss_pred HHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCc
Confidence 99854 1 10 0 1244567899999999
Q ss_pred cccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEcCC----CCeEEEEEcCCCcCCCChHHHH
Q 018030 239 IRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGS----DAEFVLLASDGLWDYMNSSDAV 314 (362)
Q Consensus 239 ~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~----~~d~lvL~SDGl~d~l~~~~i~ 314 (362)
..+|.-...+ .-+|++++.|+++.++|.. .||++||+||||||.++++|+.
T Consensus 374 H~Lkv~dsnl-------------------------~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva 428 (493)
T KOG1323|consen 374 HHLKVVDSNL-------------------------SIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVA 428 (493)
T ss_pred ceeeeecCCc-------------------------ccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHH
Confidence 9988543222 2267788999999999875 2589999999999999999999
Q ss_pred HHHHHHHHccC--CH---HHHHHHHHHHHHhc-------------CCCCCeEEEEEEcCCC
Q 018030 315 KFVRNQLQQHG--DV---QLACEALAQAALDQ-------------HSQDNISIVIADLGYA 357 (362)
Q Consensus 315 ~~v~~~l~~~~--~~---~~~a~~L~~~A~~~-------------~~~DNiTvivv~l~~~ 357 (362)
.+|+.+|.... || ..+|+.|+..|... ++.|||||.||.+++.
T Consensus 429 ~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 429 LIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCC
Confidence 99999885554 33 35778888877422 4679999999999864
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-28 Score=224.29 Aligned_cols=209 Identities=20% Similarity=0.286 Sum_probs=159.2
Q ss_pred CCCceEEEeeCCCCCeEEEEEEcCCCChh-----HHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHHHHHHHH
Q 018030 72 EMEDGAVIQSDGLDGFSFAAVFDGHGGVS-----TVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKL 146 (362)
Q Consensus 72 ~nED~~~~~~~~~~~~~~~~V~DG~GG~~-----aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~a~~~~~~~l 146 (362)
..||++++..+. ...+.|||||+|||. .+.| +++|++.|.+..+. ....+.++..+|.+||.++
T Consensus 90 ~GEDa~Fvss~~--~~~v~GVADGVGGWa~~GiDpg~f-S~eLM~~ce~~v~~----~~~~~~~P~~lL~~ay~~l---- 158 (330)
T KOG1379|consen 90 GGEDAWFVSSNP--HAIVMGVADGVGGWAEYGIDPGAF-SRELMSNCERLVQN----SDFNPSDPVNLLEKAYAEL---- 158 (330)
T ss_pred CCCcceeeccCc--ccceEEEccccchHhhcCcCHHHH-HHHHHHHHHHHhcc----cccCCCChHHHHHHHHHHH----
Confidence 489999998763 446999999999998 4554 77777888877764 4566678999999999887
Q ss_pred HHHHhhccccCCCCceEEEEEee--CCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCCCHhHHHHHHHcCCEEECC
Q 018030 147 LNRLEMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISNG 224 (362)
Q Consensus 147 ~~~~~~~~~~~~~GsT~~~~~i~--~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~i~~~ 224 (362)
..+....-++||+|++.++ +++||+||+|||.+.++|+|+++.-|..+.++.+
T Consensus 159 ----~~~~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN--------------------- 213 (330)
T KOG1379|consen 159 ----KSQKVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFN--------------------- 213 (330)
T ss_pred ----hhcCCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccC---------------------
Confidence 3344455577888888888 8899999999999999999999999999887531
Q ss_pred eeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEcCCCCeEEEEEcCCC
Q 018030 225 RICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGL 304 (362)
Q Consensus 225 rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl 304 (362)
-+|+.++.+..+-.+..+. --..+.+++++++| |+|||+||||
T Consensus 214 -----------------------------------~PyQLs~~p~~~~~~~~d~-p~~ad~~~~~v~~G-DvIilATDGl 256 (330)
T KOG1379|consen 214 -----------------------------------TPYQLSSPPEGYSSYISDV-PDSADVTSFDVQKG-DVIILATDGL 256 (330)
T ss_pred -----------------------------------CceeeccCCccccccccCC-ccccceEEEeccCC-CEEEEecccc
Confidence 0111100000000000000 01357899999999 9999999999
Q ss_pred cCCCChHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHhc-----------------------CCCCCeEEEEEE
Q 018030 305 WDYMNSSDAVKFVRNQLQ-QHGDVQLACEALAQAALDQ-----------------------HSQDNISIVIAD 353 (362)
Q Consensus 305 ~d~l~~~~i~~~v~~~l~-~~~~~~~~a~~L~~~A~~~-----------------------~~~DNiTvivv~ 353 (362)
||++.+++|.+++..... ...++|..|+.|++.|.+. |+.||||+||..
T Consensus 257 fDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 257 FDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred cccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 999999999999987765 5668999999999999554 457999999975
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=7.8e-23 Score=209.03 Aligned_cols=253 Identities=23% Similarity=0.351 Sum_probs=205.0
Q ss_pred CCCCCCCCCCeeEEEEeccCCCCCCCceEEEeeC-CCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q 018030 49 APSSLSGVAGIRWGSVSLQGLREEMEDGAVIQSD-GLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKD 127 (362)
Q Consensus 49 ~ps~~~~~~~~~~~~~s~~G~R~~nED~~~~~~~-~~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~ 127 (362)
.|+..--...+.+|++...|.|..+-=+.....+ ..+....||++||-+......++...+..++.+.++.. ..+
T Consensus 512 ~~d~~~n~~~~t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~----~~e 587 (1081)
T KOG0618|consen 512 TPDGNVNAFLWTYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLY----GNE 587 (1081)
T ss_pred CCccccceeheeeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhc----cCh
Confidence 3443344466779999999988776544332222 23344799999999999999999999999888877631 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEeeC--------CEEEEEEeccccEEEEeCCceeeCCCCCc
Q 018030 128 FDAIKKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGR--------DILFISHVGDCCVVLSRTGKADVLTNPHR 199 (362)
Q Consensus 128 ~~~~~~~L~~a~~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~--------~~l~~anvGDSr~~l~r~g~~~~lt~dH~ 199 (362)
.+-++++|...++++... ....|..++.+.+.. .++++||+|+|.++++++|+..++|+-..
T Consensus 588 ----t~~mr~~fl~~~rklg~~------g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~ 657 (1081)
T KOG0618|consen 588 ----TEQMRNTFLRLNRKLGEE------GQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPM 657 (1081)
T ss_pred ----HHHHHHHHHHHhhhhhhh------hccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCccccccc
Confidence 223999999999988542 223455555555543 47999999999999999999988888764
Q ss_pred CCCCCCCCHhHHHHHHHcCCEEE-CCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCc
Q 018030 200 PYGSGQVSLQEIRRIREAGGWIS-NGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDL 278 (362)
Q Consensus 200 ~~~~~~~~~~E~~Ri~~~gg~i~-~~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (362)
..- +++|++||+..+|+|. +++++|+...||++|.+... |.
T Consensus 658 ~~v----~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~----------------------------------P~ 699 (1081)
T KOG0618|consen 658 LEV----DREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLF----------------------------------PH 699 (1081)
T ss_pred ccC----CHHHHHHHHHhcCeecCCCeeeceeeeeeeccccccc----------------------------------cc
Confidence 431 3899999999999999 89999999999999999876 46
Q ss_pred eEecceEEEEEcCCCCeEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCC
Q 018030 279 VIASPDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYA 357 (362)
Q Consensus 279 v~~~p~i~~~~l~~~~d~lvL~SDGl~d~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~~~DNiTvivv~l~~~ 357 (362)
|.+.|++.++.|++.|+|||+++-+||++|+-+++++.+| +..+|-.+|++|++.|..+|..||++|+||++...
T Consensus 700 v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vR----n~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~ 774 (1081)
T KOG0618|consen 700 VLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVR----NVEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNHL 774 (1081)
T ss_pred ccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHh----cCCchHHHHHHHHHHHHhcccccCeeEEEEEeecc
Confidence 7789999999999999999999999999999999999996 67899999999999999999999999999999754
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.86 E-value=4.1e-21 Score=173.08 Aligned_cols=190 Identities=21% Similarity=0.291 Sum_probs=108.9
Q ss_pred EeccCCCCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhH-HHHHHHHHHHHH
Q 018030 64 VSLQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDA-IKKALQEAFENV 142 (362)
Q Consensus 64 ~s~~G~R~~nED~~~~~~~~~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~L~~a~~~~ 142 (362)
.+++|.++.|||++.+... .+..+++|+||+||...++.+++.+++.+.+.+.... ...... .+..++.+...+
T Consensus 3 ~sh~~~~~~nqD~~~~~~~--~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD--DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLL---SQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTSSS--EEEEEE-T--CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC--CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHH
Confidence 4788899999999997654 3345779999999999988888888888888877532 111111 233333333333
Q ss_pred HHHH---HHHHhhccccCCCCceEEEEEeeCCEEEEEEeccccEE-EEeCCceeeCCCCCcCCCCCCCCHhHHHHHHHcC
Q 018030 143 DMKL---LNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVV-LSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAG 218 (362)
Q Consensus 143 ~~~l---~~~~~~~~~~~~~GsT~~~~~i~~~~l~~anvGDSr~~-l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~g 218 (362)
...+ .............+||++++++.++.++++|+||||+| +.++|++.+++.+|+.. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~---------~~~----- 143 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGE---------YPN----- 143 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHH---------HHH-----
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccch---------hhh-----
Confidence 3222 11112244667789999999999999999999999996 46899999999999741 111
Q ss_pred CEEECCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEcCCCCeEEE
Q 018030 219 GWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVL 298 (362)
Q Consensus 219 g~i~~~rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lv 298 (362)
.++.+.... + ....++..+++.++ +.|+
T Consensus 144 -------------~~~~~~~~~------------------------------------~--~~~~~~~~~~~~~~-d~il 171 (212)
T PF13672_consen 144 -------------QTRSLTGDD------------------------------------P--EPDVQYGSIPLEEG-DVIL 171 (212)
T ss_dssp -------------CTTSCCHHC------------------------------------C--CTETEEEEEE--TT--EEE
T ss_pred -------------hhhccCccc------------------------------------c--ccCCeEEEEEcCCC-CEEE
Confidence 011111100 0 01346777888888 9999
Q ss_pred EEcCCCcCCCChHH-HHHHHHHHHHcc
Q 018030 299 LASDGLWDYMNSSD-AVKFVRNQLQQH 324 (362)
Q Consensus 299 L~SDGl~d~l~~~~-i~~~v~~~l~~~ 324 (362)
|||||||+.+.+.+ +..++...+...
T Consensus 172 L~SDG~~~~l~~~~~~~~~l~~~~~~~ 198 (212)
T PF13672_consen 172 LCSDGVWDNLRSYEDLEQFLKDLWNSL 198 (212)
T ss_dssp EE-HHHHTTS-HHHHHHHH--------
T ss_pred EECcCccccCCCHHHHHHHhhhccccc
Confidence 99999999998654 777776554333
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.77 E-value=6.5e-17 Score=143.53 Aligned_cols=175 Identities=17% Similarity=0.137 Sum_probs=128.7
Q ss_pred CCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 018030 71 EEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNRL 150 (362)
Q Consensus 71 ~~nED~~~~~~~~~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~a~~~~~~~l~~~~ 150 (362)
...-|.+.+.... ++..+++|+||||+...|.+++..+...+.+.+... ..+.+.+..+++.+...
T Consensus 15 ~~~GD~~~~~~~~-~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~------------~~~~~~l~~~n~~l~~~- 80 (193)
T smart00331 15 QVGGDFYDVVKLP-EGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG------------ISLSQILERLNRAIYEN- 80 (193)
T ss_pred hcCccEEEEEEeC-CCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC------------CCHHHHHHHHHHHHHhc-
Confidence 4578888776653 456799999999988888888888888877665421 12444556666666542
Q ss_pred hhccccCCCCceEEEEEe--eCCEEEEEEeccccEEEEe-CCceeeCCCCCcCCCCCCCCHhHHHHHHHcCCEEECCeec
Q 018030 151 EMNAEEDESGATATVMFI--GRDILFISHVGDCCVVLSR-TGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISNGRIC 227 (362)
Q Consensus 151 ~~~~~~~~~GsT~~~~~i--~~~~l~~anvGDSr~~l~r-~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~i~~~rv~ 227 (362)
....+++|++++++ ..++++++|+||+|+|+++ ++...+++.+..+
T Consensus 81 ----~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~~--------------------------- 129 (193)
T smart00331 81 ----GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLGA--------------------------- 129 (193)
T ss_pred ----CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCCc---------------------------
Confidence 24567999999988 5789999999999999998 6666555554332
Q ss_pred cccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEcCCCCeEEEEEcCCCcCC
Q 018030 228 GDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDY 307 (362)
Q Consensus 228 G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~d~ 307 (362)
.+|.. .. ..++...+++.++ |.|+|+||||||.
T Consensus 130 -------~lG~~------------------------------------~~---~~~~~~~~~l~~g-d~l~l~TDGl~e~ 162 (193)
T smart00331 130 -------PLGLE------------------------------------PD---VEVDVRELTLEPG-DLLLLYTDGLTEA 162 (193)
T ss_pred -------eeeeC------------------------------------CC---CcceeEEEeeCCC-CEEEEECCCcccc
Confidence 11221 11 1366778899999 9999999999999
Q ss_pred CChHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018030 308 MNSSDAVKFVRNQLQQHGDVQLACEALAQAAL 339 (362)
Q Consensus 308 l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~ 339 (362)
++++++.+++.+.. ..+++++++++.+.+.
T Consensus 163 ~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 163 RNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred CChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 99999888887532 3578888988888764
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.63 E-value=4.3e-14 Score=149.17 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=137.6
Q ss_pred cCCCCCCCceEEEeeCCCCCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHHHHHHHH
Q 018030 67 QGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKL 146 (362)
Q Consensus 67 ~G~R~~nED~~~~~~~~~~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~a~~~~~~~l 146 (362)
++.+..+.|.+.+.... ++...++|+||+|+-..|...+..+.+.+.+.+..+ .+ ...++..+|..+
T Consensus 561 k~g~~vsGD~y~~~~l~-~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g-----~~-------~~~ai~~lN~~L 627 (764)
T TIGR02865 561 KDGELVSGDSYSFGKLS-AGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESG-----FD-------REVAIKTVNSIL 627 (764)
T ss_pred CCCCcccCceEEEEEEC-CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcC-----CC-------HHHHHHHHHHHH
Confidence 34467799998776543 455789999999966666666666666655544322 11 244666666665
Q ss_pred HHHHhhccccCCCCceEEEEEee--CCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCCCHhHHHHHHHcCCEEECC
Q 018030 147 LNRLEMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISNG 224 (362)
Q Consensus 147 ~~~~~~~~~~~~~GsT~~~~~i~--~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~i~~~ 224 (362)
... ....+.+|+.+++++ .+++.++|+|+++.|+.|++++.+++..+-|.
T Consensus 628 ~~~-----~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lPl----------------------- 679 (764)
T TIGR02865 628 SLR-----STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLPI----------------------- 679 (764)
T ss_pred HhC-----CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCcee-----------------------
Confidence 431 233568999888885 68999999999999999999998887665542
Q ss_pred eeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEcCCCCeEEEEEcCCC
Q 018030 225 RICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGL 304 (362)
Q Consensus 225 rv~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl 304 (362)
| -. +. .+++..+.++.+| |+|||+|||+
T Consensus 680 ---G---------il------------------------------------~~---~~~~~~~~~L~~G-D~Lll~SDGv 707 (764)
T TIGR02865 680 ---G---------IL------------------------------------DE---VDVELVRKKLKNG-DLIVMVSDGV 707 (764)
T ss_pred ---E---------ec------------------------------------cC---CccceEEEEeCCC-CEEEEECCCC
Confidence 1 10 11 2456778899999 9999999999
Q ss_pred cCCCChHH-----HHHHHHHHHHccCCHHHHHHHHHHHHHhcC---CCCCeEEEEEEc
Q 018030 305 WDYMNSSD-----AVKFVRNQLQQHGDVQLACEALAQAALDQH---SQDNISIVIADL 354 (362)
Q Consensus 305 ~d~l~~~~-----i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~---~~DNiTvivv~l 354 (362)
||..++.+ +.+++.. ....+|+++++.|++++.+.. ..||+|++++++
T Consensus 708 ~E~~~~~~~~~~~l~~~l~~--~~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 708 LEGEKEVEGKVLWLVRKLKE--TNTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred CcCCcccccHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 99887533 4444432 124589999999999998653 379999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.55 E-value=1.9e-12 Score=114.61 Aligned_cols=177 Identities=23% Similarity=0.278 Sum_probs=115.5
Q ss_pred CCeEEEEEEcCCCChhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceEE
Q 018030 85 DGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNRLEMNAEEDESGATAT 164 (362)
Q Consensus 85 ~~~~~~~V~DG~GG~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~a~~~~~~~l~~~~~~~~~~~~~GsT~~ 164 (362)
++..+++|+|+.|.--.|.+.+..+...+....... .. ..+.+..+|+.+..... .....+|++
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~-----~~-------p~~~l~~ln~~l~~~~~----~~~~~~t~~ 65 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEG-----LD-------PEELLEALNRRLYRDLK----GDNRYATAC 65 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT-----TS-------HHHHHHHHHHHHHHHTT----TTSTTEEEE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcC-----CC-------HHHHHHHHHHHHHHHhh----hccccceEE
Confidence 456799999999955555666666666665555422 12 44445555555543222 114677888
Q ss_pred EEEee--CCEEEEEEeccccEEEEeC--CceeeCCCCCcCCCCCCCCHhHHHHHHHcCCEEECCeeccccccccccCCcc
Q 018030 165 VMFIG--RDILFISHVGDCCVVLSRT--GKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISNGRICGDIAVSRAFGDIR 240 (362)
Q Consensus 165 ~~~i~--~~~l~~anvGDSr~~l~r~--g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~i~~~rv~G~l~~tRalGd~~ 240 (362)
++.+. .++++++|+|+++++++|+ +....+.....+- |-.
T Consensus 66 ~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~l-----------------------------------G~~- 109 (193)
T PF07228_consen 66 YAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGPPL-----------------------------------GIF- 109 (193)
T ss_dssp EEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSBBC-----------------------------------SSS-
T ss_pred EEEecccceEEEEeCCCCCCEEEEeccccceeecccCccce-----------------------------------eee-
Confidence 88865 6689999999999999998 3444443333331 111
Q ss_pred cccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEcCCCCeEEEEEcCCCcCCCChHH-------H
Q 018030 241 FKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDYMNSSD-------A 313 (362)
Q Consensus 241 ~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~d~l~~~~-------i 313 (362)
+. ..+...++++.+| |.|+|+||||+|....+. +
T Consensus 110 -----------------------------------~~---~~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~~~~~~~~~ 150 (193)
T PF07228_consen 110 -----------------------------------ED---IDYQEQEIQLEPG-DRLLLYTDGLFEALNEDGEFFGEERL 150 (193)
T ss_dssp -----------------------------------CT---TCEEEEEEE--TT-EEEEEECHHHCTTTCHHCHHCCCHHH
T ss_pred -----------------------------------cc---ccccceEEEeccc-cEEEEeCCChhhccCCccchhHHHHH
Confidence 11 1355678899999 999999999999985432 2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhc---CCCCCeEEEEEEc
Q 018030 314 VKFVRNQLQQHGDVQLACEALAQAALDQ---HSQDNISIVIADL 354 (362)
Q Consensus 314 ~~~v~~~l~~~~~~~~~a~~L~~~A~~~---~~~DNiTvivv~l 354 (362)
.+++.+. ...++++.++.|.+.+.+. ...||+|++++++
T Consensus 151 ~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~ 192 (193)
T PF07228_consen 151 LELLDEN--RGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRR 192 (193)
T ss_dssp HHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE
T ss_pred HHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEE
Confidence 3444321 3457999999999999874 4679999999986
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.41 E-value=0.00011 Score=71.97 Aligned_cols=189 Identities=15% Similarity=0.118 Sum_probs=116.9
Q ss_pred CCCceEEEeeCCCCCeEEEEEEcCCC-ChhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 018030 72 EMEDGAVIQSDGLDGFSFAAVFDGHG-GVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNRL 150 (362)
Q Consensus 72 ~nED~~~~~~~~~~~~~~~~V~DG~G-G~~aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~a~~~~~~~l~~~~ 150 (362)
..=|.|-+..... ....++|.|..| |-.++-. .. +.....+.+... ...++..+ +..+|+.+...
T Consensus 161 vGGD~yd~~~~~~-~~~~i~I~DvsG~Gv~aal~-m~-~~~~~~~~~~~~---~~~~p~~~-------l~~~n~~~~~~- 226 (367)
T COG2208 161 VGGDYYDFIQLGE-KRLRIGIGDVSGKGVPAALL-ML-MPKLALRLLLES---GPLDPADV-------LETLNRVLKQN- 226 (367)
T ss_pred cCCceEEEEEECC-cEEEEEEEeccCCCHHHHHH-HH-HHHHHHHHhhhc---ccCCHHHH-------HHHHHHHHHhc-
Confidence 4567775555433 456889999888 5554433 22 222333333211 12233333 23333333321
Q ss_pred hhccccCCCCceEEEEEee--CCEEEEEEeccccEEEEeCCce---eeCCCCCcCCCCCCCCHhHHHHHHHcCCEEECCe
Q 018030 151 EMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKA---DVLTNPHRPYGSGQVSLQEIRRIREAGGWISNGR 225 (362)
Q Consensus 151 ~~~~~~~~~GsT~~~~~i~--~~~l~~anvGDSr~~l~r~g~~---~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~i~~~r 225 (362)
....+-+|+...+++ .+.+..+|+|---.++.+.++. ..+...--
T Consensus 227 ----~~~~~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~~g~-------------------------- 276 (367)
T COG2208 227 ----LEEDMFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTALGL-------------------------- 276 (367)
T ss_pred ----ccCCcEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccCCCc--------------------------
Confidence 112267788888775 6799999999999888876532 33322222
Q ss_pred eccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEcCCCCeEEEEEcCCCc
Q 018030 226 ICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLW 305 (362)
Q Consensus 226 v~G~l~~tRalGd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~i~~~~l~~~~d~lvL~SDGl~ 305 (362)
++|..++ ..+.+....+.+| |.+|+.|||+.
T Consensus 277 ---------------------------------------------piG~~~~---~~~~~~~~~l~~g-d~lvl~tDGv~ 307 (367)
T COG2208 277 ---------------------------------------------PIGLLPD---YQYEVASLQLEPG-DLLVLYTDGVT 307 (367)
T ss_pred ---------------------------------------------eeeecCC---ccchheeEEecCC-CEEEEEcCCee
Confidence 1222222 2567778889998 99999999999
Q ss_pred C-------CCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc----CCCCCeEEEEEEcC
Q 018030 306 D-------YMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQ----HSQDNISIVIADLG 355 (362)
Q Consensus 306 d-------~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~----~~~DNiTvivv~l~ 355 (362)
| .+..+...+++.+ ....+++++++.+.+...+. .-.||+|++++++.
T Consensus 308 Ea~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 308 EARNSDGEFFGLERLLKILGR--LLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred eeecCCccEecHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 9 5566677776654 34568888888888887664 34588999999875
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=81.13 E-value=40 Score=31.87 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=53.7
Q ss_pred CCceEEEeeCCCCCeEEEEEEc--CCCChhHH-HHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 018030 73 MEDGAVIQSDGLDGFSFAAVFD--GHGGVSTV-KFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNR 149 (362)
Q Consensus 73 nED~~~~~~~~~~~~~~~~V~D--G~GG~~aa-~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~a~~~~~~~l~~~ 149 (362)
.-|.+-+..-. ++...|-++| ||||+.+. .+....+...+....... .......+ .+.+..+|+.+...
T Consensus 150 ~GD~~d~~~l~-~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~---~~~~~~~p----~~~l~~lN~~l~~~ 221 (303)
T PRK10693 150 PGLVLDIAALS-DNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAH---QNQRLPEL----GALLKQVNHLLRQA 221 (303)
T ss_pred CccEEeeeecC-CCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcc---cccccCCH----HHHHHHHHHHHHhc
Confidence 45666554432 3445666667 88877632 333333333332221100 00000112 33455566665542
Q ss_pred HhhccccCCCCceEEEEEee--CCEEEEEEeccccEEEEeCCce
Q 018030 150 LEMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKA 191 (362)
Q Consensus 150 ~~~~~~~~~~GsT~~~~~i~--~~~l~~anvGDSr~~l~r~g~~ 191 (362)
. . ..--|+++.+++ .+++.++|.|-...++..++++
T Consensus 222 ----~-~-~~~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 222 ----N-L-PGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred ----C-C-CceeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 1 1 112477777775 5689999999999886555544
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=44.04 E-value=14 Score=27.26 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=15.1
Q ss_pred CCCeEEEEEcCCCcCCCChH
Q 018030 292 SDAEFVLLASDGLWDYMNSS 311 (362)
Q Consensus 292 ~~~d~lvL~SDGl~d~l~~~ 311 (362)
+| +.+|+++||+|=-+...
T Consensus 26 ~G-~Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 26 PG-HRLLVASNGVFLEVRRP 44 (72)
T ss_pred CC-cEEEEecCcEEEEEech
Confidence 56 99999999999655443
No 22
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.26 E-value=3.6e+02 Score=24.90 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=29.6
Q ss_pred eEEEEEeeCCEEEEEEeccccEEEEeCCceeeCCCCCcCCCCCCCCHhHHHHHHHcC
Q 018030 162 TATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAG 218 (362)
Q Consensus 162 T~~~~~i~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~g 218 (362)
|++++++..+-..+ .||-|-+.+|..+...--.+-..|.-.-.+.+|++|....=
T Consensus 2 tLviay~gknGavi--aGDrR~i~frgdee~re~lEekLYsGeIkteEEL~r~aeel 56 (293)
T COG4079 2 TLVIAYIGKNGAVI--AGDRREITFRGDEEDREKLEEKLYSGEIKTEEELARKAEEL 56 (293)
T ss_pred eEEEEEecCCCcEE--eccceEEEEecChhHHHHHHHHhhcCccccHHHHHHHHHHc
Confidence 67777776665555 48999888886642221111122211111267777765543
No 23
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=33.01 E-value=53 Score=28.84 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCcC-----------CCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 018030 294 AEFVLLASDGLWD-----------YMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQH 342 (362)
Q Consensus 294 ~d~lvL~SDGl~d-----------~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~~ 342 (362)
||-++..|.|+|- +|.++..-+.|..-..+..=|++.|..|++.-.++|
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 3889999999984 444555444443332333458999999999887775
No 24
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=28.09 E-value=3.8e+02 Score=22.79 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=44.5
Q ss_pred EEEcCCCCeEEEEEcCCCcCCCChHHHHHHHHHHH----HccCCHHHHHHHHHHHHHhc-CCCCCeEEEEEEc
Q 018030 287 QVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQL----QQHGDVQLACEALAQAALDQ-HSQDNISIVIADL 354 (362)
Q Consensus 287 ~~~l~~~~d~lvL~SDGl~d~l~~~~i~~~v~~~l----~~~~~~~~~a~~L~~~A~~~-~~~DNiTvivv~l 354 (362)
.+++.++ .++++..||.-.-..-..+...+...+ ....++..+.+.+-+..... ....-+|++++.+
T Consensus 23 ~~~~~~~-~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~~~~~~~~~~T~~~~~i 94 (193)
T smart00331 23 VVKLPEG-RLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIYENGEDGMFATLFLALY 94 (193)
T ss_pred EEEeCCC-eEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 4455555 789999999998777666665555444 33346778877776666554 3345677777766
No 25
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=26.08 E-value=2.8e+02 Score=21.90 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=45.3
Q ss_pred EEcCCCcCCCChHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhcCC-CCCeEEEEEEcCC
Q 018030 299 LASDGLWDYMNSSDAVKFVRNQLQQH--GDVQLACEALAQAALDQHS-QDNISIVIADLGY 356 (362)
Q Consensus 299 L~SDGl~d~l~~~~i~~~v~~~l~~~--~~~~~~a~~L~~~A~~~~~-~DNiTvivv~l~~ 356 (362)
-.+|.+-+.++..++.+.+.+.+... .-.+.+|+.|++..+.... .+-+++-+-+.+.
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp~a 101 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSKPNA 101 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEeCCC
Confidence 45889999999999999998877643 3677899999998887744 6777777777654
No 26
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=25.97 E-value=2.3e+02 Score=22.46 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=44.1
Q ss_pred EEcCCCcCCCChHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhc-CCCCCeEEEEEEcCC
Q 018030 299 LASDGLWDYMNSSDAVKFVRNQLQQH--GDVQLACEALAQAALDQ-HSQDNISIVIADLGY 356 (362)
Q Consensus 299 L~SDGl~d~l~~~~i~~~v~~~l~~~--~~~~~~a~~L~~~A~~~-~~~DNiTvivv~l~~ 356 (362)
-.||-+-+.++...+.+.+.+.+... ...+.+|+.|++..+.. ...+.+++-|-+.+.
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~~~~v~~v~v~v~K~~~ 102 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLEDYPKVSAIKVKVEKPNA 102 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHhCCCceEEEEEEECCCC
Confidence 46788989999999999998877543 46788999999998877 445666666655543
No 27
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.93 E-value=1.2e+02 Score=28.49 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=34.9
Q ss_pred EEcCCCChh--------------HHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHHHHH
Q 018030 92 VFDGHGGVS--------------TVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVD 143 (362)
Q Consensus 92 V~DG~GG~~--------------aa~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~a~~~~~ 143 (362)
|||||+|.. .++|.+..+.....+....+......+.-.+..+|..+.+-++
T Consensus 136 v~~~~~~~~i~~~i~gp~~slp~ngdY~ay~~w~~~~k~tsn~~~~~~~~ay~i~aAltyt~QLv~ 201 (359)
T KOG4398|consen 136 VCDDHMSDKINFIIPGPTQSLPINGDYIAYKLWAKLAKQTSNGTISLPLDAYPIFAALTYTLQLVH 201 (359)
T ss_pred EEcCCCCcceeEEecCCcccccCCCchHHHHHHHhhhhhccCCCcCCCccccchHHHHHHHHHHHH
Confidence 678888644 4566666666666666666665556666667777777766654
No 28
>PRK05457 heat shock protein HtpX; Provisional
Probab=23.76 E-value=92 Score=29.33 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCeEEEEEcCCCcCCCChHHHHHHHHHHHH
Q 018030 283 PDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQ 322 (362)
Q Consensus 283 p~i~~~~l~~~~d~lvL~SDGl~d~l~~~~i~~~v~~~l~ 322 (362)
|.-...-..+. ..+|+.|+|+.+.++++|+..++.+.+.
T Consensus 105 ~NAfa~G~~~~-~~~V~vt~gLl~~L~~~El~aVlAHElg 143 (284)
T PRK05457 105 INAFATGASKN-NSLVAVSTGLLQNMSRDEVEAVLAHEIS 143 (284)
T ss_pred ceEEEecCCCC-CeEEEeehHHhhhCCHHHHHHHHHHHHH
Confidence 44444444455 7899999999999999999999987763
No 29
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=23.04 E-value=3.9e+02 Score=22.13 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=28.2
Q ss_pred ecceEEEEEcCCCCeEEEEEcCCCcCCCChHHHHHHHHH
Q 018030 281 ASPDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRN 319 (362)
Q Consensus 281 ~~p~i~~~~l~~~~d~lvL~SDGl~d~l~~~~i~~~v~~ 319 (362)
+.|.+....+..+.--++-..+|+|..++.++..++..+
T Consensus 76 P~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
T PF14014_consen 76 PPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKE 114 (157)
T ss_pred CCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHH
Confidence 567888888887734455677888888887777766654
No 30
>PRK02391 heat shock protein HtpX; Provisional
Probab=22.62 E-value=75 Score=30.13 Aligned_cols=39 Identities=15% Similarity=0.345 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCeEEEEEcCCCcCCCChHHHHHHHHHHHH
Q 018030 283 PDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQ 322 (362)
Q Consensus 283 p~i~~~~l~~~~d~lvL~SDGl~d~l~~~~i~~~v~~~l~ 322 (362)
|.-...-..+. ..+|+.|||+.+.++++|+..++.+.+.
T Consensus 104 ~NAfa~G~~~~-~~~V~vt~gLl~~L~~~El~aVlaHElg 142 (296)
T PRK02391 104 PNAFATGRSPK-NAVVCVTTGLMRRLDPDELEAVLAHELS 142 (296)
T ss_pred CceEEecCCCC-CcEEEecHHHHhhCCHHHHHHHHHHHHH
Confidence 33333333444 6788999999999999999999987663
No 31
>PRK03982 heat shock protein HtpX; Provisional
Probab=22.54 E-value=99 Score=29.06 Aligned_cols=38 Identities=16% Similarity=0.419 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCeEEEEEcCCCcCCCChHHHHHHHHHHH
Q 018030 283 PDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQL 321 (362)
Q Consensus 283 p~i~~~~l~~~~d~lvL~SDGl~d~l~~~~i~~~v~~~l 321 (362)
|.-......+. +.+|..|||+.+.++++|+..++.+.+
T Consensus 96 ~NAfa~G~~~~-~~~V~vt~gLl~~l~~~El~AVlAHEl 133 (288)
T PRK03982 96 PNAFATGRDPK-HAVVAVTEGILNLLNEDELEGVIAHEL 133 (288)
T ss_pred cceEEeccCCC-CeEEEeehHHHhhCCHHHHHHHHHHHH
Confidence 33334444454 567888999999999999999998766
No 32
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=22.30 E-value=3.3e+02 Score=26.18 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=37.3
Q ss_pred EEEEEcCCCChh-------HHHHHHHHHHHHHHHHHhcCccc-------------------CCCChhHHHHHHHHHHHHH
Q 018030 89 FAAVFDGHGGVS-------TVKFLRDELYKECVAALQGGLLL-------------------SGKDFDAIKKALQEAFENV 142 (362)
Q Consensus 89 ~~~V~DG~GG~~-------aa~~~~~~l~~~~~~~l~~~~~~-------------------~~~~~~~~~~~L~~a~~~~ 142 (362)
=..||||+.|.- .+.++.+.+.+.+...+...... -..+...+..+|+.|...+
T Consensus 224 DVvV~DGFtGNv~LKt~EG~~~~~~~~lk~~~~~~~k~~~D~~~~gGA~lLGl~g~vvk~HG~S~a~a~~nAi~~A~~~~ 303 (316)
T PRK13846 224 DIVVTDGFTGNIFLKTAEGVFDFLRHILGDKLEKDIKRQLDYTIYPGSIVCGLSKLVIKCHGKACGTSLFGGISGSIDLA 303 (316)
T ss_pred CEEEeCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCChhhcCCEEEEcCCceEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 468999999765 55555555554443333321100 1233567778888888887
Q ss_pred HHHHHHHHh
Q 018030 143 DMKLLNRLE 151 (362)
Q Consensus 143 ~~~l~~~~~ 151 (362)
..++.....
T Consensus 304 ~~~~~~~i~ 312 (316)
T PRK13846 304 RARVCSRIL 312 (316)
T ss_pred HhCHHHHHH
Confidence 777766543
No 33
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=22.05 E-value=2.6e+02 Score=21.24 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCcCCCChHHHHHHHHHHHHccC----------CHHHHHHHHHHHHHhcCCCCC
Q 018030 293 DAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHG----------DVQLACEALAQAALDQHSQDN 346 (362)
Q Consensus 293 ~~d~lvL~SDGl~d~l~~~~i~~~v~~~l~~~~----------~~~~~a~~L~~~A~~~~~~DN 346 (362)
.|.|+||-.+-==.+++.+|+..-+...+.+.. +.++.|+.|++.+.+..-.+.
T Consensus 9 ~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~~~LP~dL~~~~s~~~qa~~Lldt~CeLeigpg 72 (83)
T PF12095_consen 9 EDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQDDLPPDLAKFSSVEEQAQYLLDTACELEIGPG 72 (83)
T ss_dssp ---EEEEESSS-SEEE-HHHHHHHHHHHHHHTTTS-HHHHH---HHHHHHHHHHH---EEEETT
T ss_pred cCCEEEecCCCCcccCCHHHHHHHHHHHHHcCCCCCHHHHhCCCHHHHHHHHHHhceeeecCCC
Confidence 346777776655558999999999988776543 566788899988877543333
No 34
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=21.05 E-value=2.1e+02 Score=19.94 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=14.9
Q ss_pred eEEEEEcCCCcCCCChHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018030 295 EFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQA 337 (362)
Q Consensus 295 d~lvL~SDGl~d~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~ 337 (362)
+++||-.++-. +.-.+...++.+.+....++.++++.|.++
T Consensus 2 e~vll~~~~~~--~~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 2 EYVLLDPESGE--FTLNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp EEEEE------------THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred CEEEEeCCCCC--ccccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 44555544443 233444455555555445666666655543
No 35
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=21.04 E-value=4.2e+02 Score=24.29 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=27.3
Q ss_pred eEEEEEee-CCEEEEEEeccccEEE--EeCCceeeCCCCCcC
Q 018030 162 TATVMFIG-RDILFISHVGDCCVVL--SRTGKADVLTNPHRP 200 (362)
Q Consensus 162 T~~~~~i~-~~~l~~anvGDSr~~l--~r~g~~~~lt~dH~~ 200 (362)
.+..+.++ .++|.+.---||.+.| +|+|..+|.-.+|+.
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa 274 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA 274 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc
Confidence 33333343 5677777677887766 589999998888886
No 36
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=20.15 E-value=4.2e+02 Score=21.05 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=40.1
Q ss_pred EEEcCCCcCCCChHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCCCeEEEE
Q 018030 298 LLASDGLWDYMNSSDAVKFVRNQLQQH--GDVQLACEALAQAALDQHSQDNISIVI 351 (362)
Q Consensus 298 vL~SDGl~d~l~~~~i~~~v~~~l~~~--~~~~~~a~~L~~~A~~~~~~DNiTviv 351 (362)
.-.||-+-+.++-..+.+.+.+.+.+. .-.+.+|+.|++..+......-+++-|
T Consensus 41 a~~~Ddl~~tidY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~~~v~v~v 96 (119)
T PRK11593 41 AAKSDDVADCLSYADIAETVISHVEGARFALVERVAEEVAELLLARFNSPWVRIKL 96 (119)
T ss_pred cccccCHhhccCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 355888999999999999998877644 378889999998887765434444333
Done!