BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018034
         (362 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OQH|A Chain A, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic
 pdb|3OQH|B Chain B, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic
 pdb|3OQI|A Chain A, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
           Complex With Ches
 pdb|3OQJ|A Chain A, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
           Complex With Capso
 pdb|3OQJ|B Chain B, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
           Complex With Capso
          Length = 257

 Score = 28.9 bits (63), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 120 EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADI------KEEYILMAEPDHII 169
           E+P FIA P   G+++  +  +RPW   + + + +        + Y++++E D  +
Sbjct: 184 ELPFFIAAPDILGVEETLLAYHRPWKLGEQISRNEFAVKMRPNQGYLMVSEADERV 239


>pdb|3OQI|B Chain B, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
           Complex With Ches
          Length = 257

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 120 EIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLEKADI------KEEYILMAEPDHII 169
           E+P FIA P   G+++  +  +RPW   + + + +        + Y++++E D  +
Sbjct: 184 ELPFFIAAPDILGVEETLLAYHRPWKLGEQISRNEFAVKMRPNQGYLMVSEADERV 239


>pdb|3IZG|G Chain G, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
 pdb|3IZG|A Chain A, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
 pdb|3IZG|B Chain B, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
 pdb|3IZG|C Chain C, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
 pdb|3IZG|D Chain D, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
 pdb|3IZG|E Chain E, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
 pdb|3IZG|F Chain F, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
 pdb|2XVR|A Chain A, Phage T7 Empty Mature Head Shell
 pdb|2XVR|B Chain B, Phage T7 Empty Mature Head Shell
 pdb|2XVR|C Chain C, Phage T7 Empty Mature Head Shell
 pdb|2XVR|D Chain D, Phage T7 Empty Mature Head Shell
 pdb|2XVR|E Chain E, Phage T7 Empty Mature Head Shell
 pdb|2XVR|F Chain F, Phage T7 Empty Mature Head Shell
 pdb|2XVR|G Chain G, Phage T7 Empty Mature Head Shell
          Length = 345

 Score = 28.1 bits (61), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query: 152 KADIKEEYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPIT 211
           KA + ++  L  E    + K    L+K+ + AA   FY +P  Y ++L    P       
Sbjct: 171 KAALTDQVALGKEIIAALTKARAALTKNYVPAADRVFYCDPDSYSAILAALMPNAANYAA 230

Query: 212 NIDP 215
            IDP
Sbjct: 231 LIDP 234


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,886,046
Number of Sequences: 62578
Number of extensions: 457405
Number of successful extensions: 746
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 4
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)