Query 018034
Match_columns 362
No_of_seqs 110 out of 131
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04244 DPRP: Deoxyribodipyri 41.6 26 0.00056 33.5 3.2 55 299-358 159-216 (224)
2 PF05637 Glyco_transf_34: gala 32.3 52 0.0011 31.4 3.6 38 137-175 58-95 (239)
3 PF01501 Glyco_transf_8: Glyco 24.1 62 0.0013 28.9 2.5 32 155-186 97-131 (250)
4 cd06437 CESA_CaSu_A2 Cellulose 23.8 72 0.0016 28.6 2.8 26 142-169 75-100 (232)
5 cd04191 Glucan_BSP_ModH Glucan 21.8 84 0.0018 30.1 3.0 29 142-170 81-109 (254)
6 PRK05454 glucosyltransferase M 20.7 83 0.0018 35.0 3.0 30 142-171 206-235 (691)
7 cd06434 GT2_HAS Hyaluronan syn 19.1 1.3E+02 0.0027 26.7 3.4 27 142-170 65-91 (235)
8 PRK11498 bcsA cellulose syntha 18.4 89 0.0019 35.7 2.7 27 142-170 327-353 (852)
9 cd06423 CESA_like CESA_like is 17.0 1.3E+02 0.0029 23.9 2.8 26 142-169 66-91 (180)
10 cd06439 CESA_like_1 CESA_like_ 16.7 1.3E+02 0.0028 27.1 3.0 28 141-170 96-123 (251)
No 1
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=41.59 E-value=26 Score=33.47 Aligned_cols=55 Identities=25% Similarity=0.632 Sum_probs=22.4
Q ss_pred CccccCCCccccCccceeeeeccCCCCCCCCCCCCCCCCC-C-ChHHH-HHHHHHHHHhhcCC
Q 018034 299 GCDYDMKGHLTYGKIGEWRFDKRSYDSVPPPRNLPLPPPG-V-PESVV-TLVKMVNEATANIP 358 (362)
Q Consensus 299 G~~y~~~g~~~~gkig~W~FDKr~~~~~~pp~~l~~PP~~-v-~~~~~-~lv~~~NeA~~~~p 358 (362)
|...+.+|+-. +|.|+||.-.- +++|++.+.|++- . +...+ ..++.|++.-.+-|
T Consensus 159 ~ILmd~~g~P~---GGkWnfD~eNR--k~~p~~~~~P~~~~~~~d~it~~v~~~V~~~f~~~~ 216 (224)
T PF04244_consen 159 GILMDEDGKPV---GGKWNFDAENR--KKLPKGIPIPEPPRFEPDAITQEVIELVEKHFPDHP 216 (224)
T ss_dssp TTTE-ETTEEG---GGSS--GGGS---------TTS---------HHHHHHHHHHHHH-TTSS
T ss_pred CccccCCCCcC---CCcCCCChhhc--cCCCCCCCCCCCCCCCCChHHHHHHHHHHHHCCCCC
Confidence 55565566543 67899998653 3344444444332 2 23333 36777777665544
No 2
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=32.31 E-value=52 Score=31.42 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=24.1
Q ss_pred CcccCchhHHHHHHHhCCCCccEEEEecCCeeeecCCCC
Q 018034 137 YIVLNRPWAFVQWLEKADIKEEYILMAEPDHIIVKPIPN 175 (362)
Q Consensus 137 Y~v~NKP~A~~qWL~~a~i~e~~IlmlDpD~I~~rPl~~ 175 (362)
...-.|+.++++-|++- .+.+||+-+|+|-||+.|=..
T Consensus 58 ~~~W~K~~~lr~~m~~~-P~~~wv~~lD~Dali~n~~~~ 95 (239)
T PF05637_consen 58 PGSWAKIPALRAAMKKY-PEAEWVWWLDSDALIMNPDFS 95 (239)
T ss_dssp HHHHTHHHHHHHHHHH--TT-SEEEEE-TTEEE------
T ss_pred ChhhHHHHHHHHHHHhC-CCCCEEEEEcCCeEEEecccc
Confidence 34577899999988653 367999999999999997443
No 3
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=24.14 E-value=62 Score=28.93 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=21.0
Q ss_pred CCccEEEEecCCeeeecCCCCC---CCCCcccccc
Q 018034 155 IKEEYILMAEPDHIIVKPIPNL---SKDGLGAAFP 186 (362)
Q Consensus 155 i~e~~IlmlDpD~I~~rPl~~~---a~~G~p~a~~ 186 (362)
.+.+-||.+|+|+|+++++..+ ..+|.++|..
T Consensus 97 ~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~ 131 (250)
T PF01501_consen 97 PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAV 131 (250)
T ss_dssp TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEE
T ss_pred hhcCeEEEEcCCeeeecChhhhhcccchhhhcccc
Confidence 4669999999999999998742 2346665543
No 4
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=23.79 E-value=72 Score=28.63 Aligned_cols=26 Identities=23% Similarity=0.384 Sum_probs=21.7
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeee
Q 018034 142 RPWAFVQWLEKADIKEEYILMAEPDHII 169 (362)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (362)
|+.|+..-++++ +.+||+++|+|.++
T Consensus 75 k~~a~n~g~~~a--~~~~i~~~DaD~~~ 100 (232)
T cd06437 75 KAGALAEGMKVA--KGEYVAIFDADFVP 100 (232)
T ss_pred chHHHHHHHHhC--CCCEEEEEcCCCCC
Confidence 667777777766 67999999999986
No 5
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=21.81 E-value=84 Score=30.05 Aligned_cols=29 Identities=7% Similarity=0.319 Sum_probs=22.7
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeeee
Q 018034 142 RPWAFVQWLEKADIKEEYILMAEPDHIIV 170 (362)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 170 (362)
|-.++...+++..-+.+||+++|+|.+.-
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~ 109 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMS 109 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCC
Confidence 55667777776556789999999999874
No 6
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=20.65 E-value=83 Score=34.96 Aligned_cols=30 Identities=7% Similarity=0.232 Sum_probs=25.9
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeeeec
Q 018034 142 RPWAFVQWLEKADIKEEYILMAEPDHIIVK 171 (362)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~r 171 (362)
|-+.+.+|++...-+.|||+++|+|.++-+
T Consensus 206 KaGNl~~~~~~~~~~~eyivvLDADs~m~~ 235 (691)
T PRK05454 206 KAGNIADFCRRWGGAYDYMVVLDADSLMSG 235 (691)
T ss_pred cHHHHHHHHHhcCCCcCEEEEEcCCCCCCH
Confidence 678899999987778899999999998743
No 7
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=19.07 E-value=1.3e+02 Score=26.74 Aligned_cols=27 Identities=7% Similarity=0.271 Sum_probs=22.3
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeeee
Q 018034 142 RPWAFVQWLEKADIKEEYILMAEPDHIIV 170 (362)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 170 (362)
|..|+..-++.+ +.+||+++|+|-++-
T Consensus 65 ~~~a~n~g~~~a--~~d~v~~lD~D~~~~ 91 (235)
T cd06434 65 KRRALAEGIRHV--TTDIVVLLDSDTVWP 91 (235)
T ss_pred hHHHHHHHHHHh--CCCEEEEECCCceeC
Confidence 567777777776 789999999999884
No 8
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=18.44 E-value=89 Score=35.68 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.1
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeeee
Q 018034 142 RPWAFVQWLEKADIKEEYILMAEPDHIIV 170 (362)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 170 (362)
|.+++.+.|+++ +.|||+++|+|++.-
T Consensus 327 KAGnLN~aL~~a--~GEyIavlDAD~ip~ 353 (852)
T PRK11498 327 KAGNINNALKYA--KGEFVAIFDCDHVPT 353 (852)
T ss_pred hHHHHHHHHHhC--CCCEEEEECCCCCCC
Confidence 678888999886 679999999999953
No 9
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=16.97 E-value=1.3e+02 Score=23.94 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=19.9
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeee
Q 018034 142 RPWAFVQWLEKADIKEEYILMAEPDHII 169 (362)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (362)
+..|...-++.+ +.+||+++|+|.++
T Consensus 66 ~~~~~n~~~~~~--~~~~i~~~D~D~~~ 91 (180)
T cd06423 66 KAGALNAGLRHA--KGDIVVVLDADTIL 91 (180)
T ss_pred chHHHHHHHHhc--CCCEEEEECCCCCc
Confidence 445666666665 78999999999877
No 10
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=16.68 E-value=1.3e+02 Score=27.07 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=23.4
Q ss_pred CchhHHHHHHHhCCCCccEEEEecCCeeee
Q 018034 141 NRPWAFVQWLEKADIKEEYILMAEPDHIIV 170 (362)
Q Consensus 141 NKP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 170 (362)
++..|+.+-++++. .+||+++|+|.++-
T Consensus 96 g~~~a~n~gi~~a~--~d~i~~lD~D~~~~ 123 (251)
T cd06439 96 GKAAALNRALALAT--GEIVVFTDANALLD 123 (251)
T ss_pred ChHHHHHHHHHHcC--CCEEEEEccccCcC
Confidence 46788888888875 59999999999984
Done!