Query 018034
Match_columns 362
No_of_seqs 110 out of 131
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:51:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ffy_A Putative tetrapyrrole ( 14.2 1.2E+02 0.0041 24.4 3.1 28 138-165 85-112 (115)
2 2l9a_X LAK160-P12; cationic, p 13.9 37 0.0013 21.2 -0.1 17 228-244 7-23 (26)
3 3zxs_A Cryptochrome B, rscryb; 10.0 3.3E+02 0.011 28.0 5.5 20 149-168 32-51 (522)
4 1ll2_A Glycogenin-1; protein-s 9.1 1.7E+02 0.0058 27.7 2.8 22 155-176 93-114 (333)
5 1r4g_A RNA polymerase alpha su 8.9 1.7E+02 0.0058 21.3 2.0 19 340-358 34-52 (53)
6 1g9r_A Glycosyl transferase; a 8.5 1.6E+02 0.0055 27.1 2.3 21 156-176 95-115 (311)
7 3j1r_A Archaeal adhesion filam 8.5 2.7E+02 0.0091 17.6 2.5 18 6-23 7-24 (26)
8 4hg6_A Cellulose synthase subu 8.0 2.3E+02 0.0079 29.9 3.5 26 142-169 226-251 (802)
9 2bog_X Endoglucanase E-2; hydr 7.0 4.7E+02 0.016 24.9 4.8 49 119-168 65-119 (286)
10 3ulb_A Target of rapamycin com 6.2 2.8E+02 0.0096 23.4 2.4 39 156-194 27-68 (121)
No 1
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=14.23 E-value=1.2e+02 Score=24.36 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=23.1
Q ss_pred cccCchhHHHHHHHhCCCCccEEEEecC
Q 018034 138 IVLNRPWAFVQWLEKADIKEEYILMAEP 165 (362)
Q Consensus 138 ~v~NKP~A~~qWL~~a~i~e~~IlmlDp 165 (362)
...-.-.-+.+|++...++.++||++++
T Consensus 85 ~~rgtl~el~~~~~~~~~kGe~vivv~~ 112 (115)
T 3ffy_A 85 TVRGTLSELIEHFTATDPRGEIVIVLAG 112 (115)
T ss_dssp EEEEEHHHHHHHHHHSCCCSSEEEEECC
T ss_pred EEEeeHHHHHHHHHhcCCCCCEEEEEeC
Confidence 4455567789999998999999999985
No 2
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=13.94 E-value=37 Score=21.19 Aligned_cols=17 Identities=47% Similarity=0.972 Sum_probs=13.9
Q ss_pred HHhhhHHHHHHhhhhcc
Q 018034 228 LKKIAPVWMNVSLAMKK 244 (362)
Q Consensus 228 L~~iAP~W~~~t~~vr~ 244 (362)
|.++||+|-.++.+.+.
T Consensus 7 laklaplwkalalklkk 23 (26)
T 2l9a_X 7 LAKLAPLWKALALKLKK 23 (26)
T ss_dssp SSSSCTHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 56899999999887754
No 3
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=9.98 E-value=3.3e+02 Score=27.97 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=14.2
Q ss_pred HHHhCCCCccEEEEecCCee
Q 018034 149 WLEKADIKEEYILMAEPDHI 168 (362)
Q Consensus 149 WL~~a~i~e~~IlmlDpD~I 168 (362)
||+..+...+.|||+|..-.
T Consensus 32 ~~~~~~~~~~~~~~~E~~~~ 51 (522)
T 3zxs_A 32 ALRAADPAADLVVMAEVMEE 51 (522)
T ss_dssp HHHTCCTTTCEEEEECCHHH
T ss_pred hhhhcCCCCCEEEEEEechH
Confidence 56666667778999997433
No 4
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=9.07 E-value=1.7e+02 Score=27.66 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=18.8
Q ss_pred CCccEEEEecCCeeeecCCCCC
Q 018034 155 IKEEYILMAEPDHIIVKPIPNL 176 (362)
Q Consensus 155 i~e~~IlmlDpD~I~~rPl~~~ 176 (362)
.+-+-||-||+|+|+++++..+
T Consensus 93 ~~ydrvlYLDaD~lv~~di~eL 114 (333)
T 1ll2_A 93 TQYSKCVFMDADTLVLANIDDL 114 (333)
T ss_dssp TTCSEEEEECTTEEECSCCGGG
T ss_pred cCCCeEEEEeCCEEeccCHHHH
Confidence 3558999999999999998764
No 5
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=8.86 E-value=1.7e+02 Score=21.25 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHHhhcCC
Q 018034 340 PESVVTLVKMVNEATANIP 358 (362)
Q Consensus 340 ~~~~~~lv~~~NeA~~~~p 358 (362)
.|+|-.+.+||||-+..|-
T Consensus 34 dqEV~~~Memf~EDi~slt 52 (53)
T 1r4g_A 34 DQEVKAVMELVEEDIESLT 52 (53)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 4677789999999988764
No 6
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=8.48 E-value=1.6e+02 Score=27.08 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.0
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 018034 156 KEEYILMAEPDHIIVKPIPNL 176 (362)
Q Consensus 156 ~e~~IlmlDpD~I~~rPl~~~ 176 (362)
+-+-||-+|+|+|+++.+..+
T Consensus 95 ~~~kvlyLD~D~iv~~di~eL 115 (311)
T 1g9r_A 95 DCDKVLYLDIDVLVRDSLTPL 115 (311)
T ss_dssp SCSCEEEECSSEEECSCCHHH
T ss_pred hcCEEEEEcCCeEeccCHHHH
Confidence 458899999999999998753
No 7
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=8.47 E-value=2.7e+02 Score=17.64 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 018034 6 LFYSTLVTFSVALITYNI 23 (362)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (362)
..+|++++++.+.+.|--
T Consensus 7 ~~lLIviav~aaVllylW 24 (26)
T 3j1r_A 7 TLLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356788888888887743
No 8
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=7.98 E-value=2.3e+02 Score=29.92 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.4
Q ss_pred chhHHHHHHHhCCCCccEEEEecCCeee
Q 018034 142 RPWAFVQWLEKADIKEEYILMAEPDHII 169 (362)
Q Consensus 142 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 169 (362)
|..|+.+-++++ +.|||+++|+|.++
T Consensus 226 Ka~alN~gl~~a--~gd~Il~lDaD~~~ 251 (802)
T 4hg6_A 226 KAGNMSAALERL--KGELVVVFDADHVP 251 (802)
T ss_dssp HHHHHHHHHHHC--CCSEEEECCTTEEE
T ss_pred chHHHHHHHHhc--CCCEEEEECCCCCc
Confidence 677888888887 67999999999987
No 9
>2bog_X Endoglucanase E-2; hydrolase, thermobifida fusca, TIM A/B fold, glycoside hydrolase family 6; HET: MGL SGC BGC; 1.04A {Thermomonospora fusca} PDB: 2bof_X* 2boe_X* 2bod_X* 1tml_A* 3ru8_X 3rpt_X
Probab=7.02 E-value=4.7e+02 Score=24.85 Aligned_cols=49 Identities=20% Similarity=0.424 Sum_probs=32.2
Q ss_pred CCCCceEeCCCCCCCCC-CCcc--cCchhHHHHHHHhC--CC-CccEEEEecCCee
Q 018034 119 DEIPTFIAQPLPAGMDQ-GYIV--LNRPWAFVQWLEKA--DI-KEEYILMAEPDHI 168 (362)
Q Consensus 119 devPTfvv~pl~~~~dd-~Y~v--~NKP~A~~qWL~~a--~i-~e~~IlmlDpD~I 168 (362)
+.+|.||+-=||.. || .|+. ..-...-+.|++.- .+ +...|++||||=|
T Consensus 65 ~~~pvlVvY~lP~R-DCa~aS~Gg~~~~~~Yk~~Id~ia~~i~~~~~vvIlEPDsL 119 (286)
T 2bog_X 65 GKIPILVVSNAPGR-DCGNHSSGGAPSHSAYRSWIDEFAAGLKNRPAYIIVEPDLI 119 (286)
T ss_dssp TCBCEEEECCCSCS-CCC------CSSHHHHHHHHHHHHHTTTTCCCEEEECTTHH
T ss_pred CCceEEEEeCCCCC-CcccccCCCCCCHHHHHHHHHHHHHHhCCCceEEEECcCch
Confidence 34788999888764 33 3332 22366678899882 34 3578999999986
No 10
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=6.21 E-value=2.8e+02 Score=23.39 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=29.0
Q ss_pred CccEEEEecCCeeeecCCCC---CCCCCccccccccccCCcc
Q 018034 156 KEEYILMAEPDHIIVKPIPN---LSKDGLGAAFPFFYIEPKK 194 (362)
Q Consensus 156 ~e~~IlmlDpD~I~~rPl~~---~a~~G~p~a~~f~Yi~p~~ 194 (362)
+.|=+|.||.|+|-+-|-.. +-..|...++.|.=|++++
T Consensus 27 ~~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K 68 (121)
T 3ulb_A 27 KHERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVK 68 (121)
T ss_dssp EEEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEE
T ss_pred cccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEE
Confidence 35778999999999999753 2235677888888888876
Done!