Query 018034
Match_columns 362
No_of_seqs 110 out of 131
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 08:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018034.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018034hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ll2a_ c.68.1.14 (A:) Glycoge 18.1 30 0.0022 28.6 2.6 22 155-176 93-114 (263)
2 d1ga8a_ c.68.1.4 (A:) Galactos 14.5 35 0.0026 28.5 2.1 80 156-241 95-179 (282)
3 d1omza_ c.68.1.15 (A:) Alpha-1 11.8 53 0.0039 24.6 2.3 15 155-169 80-94 (265)
4 d1o7qa_ c.68.1.9 (A:) alpha-1, 9.3 58 0.0042 29.0 1.8 21 156-176 136-156 (287)
5 d1lzia_ c.68.1.9 (A:) Glycosyl 9.1 59 0.0043 28.8 1.8 21 156-176 141-161 (283)
6 d1z8ua1 a.7.11.1 (A:2-91) Alph 8.4 71 0.0052 23.7 1.7 20 221-240 29-48 (90)
7 d1yfua1 b.82.1.20 (A:1-174) 3- 8.4 82 0.0059 26.1 2.3 15 139-153 3-17 (174)
8 d1r4ga_ a.8.5.1 (A:) RNA polym 8.0 92 0.0067 20.9 2.0 19 340-358 34-52 (53)
9 d1w77a1 c.68.1.13 (A:75-300) 4 7.9 90 0.0065 24.8 2.4 31 141-171 82-112 (226)
10 d1vioa1 d.265.1.3 (A:58-231) R 7.6 29 0.0021 27.5 -1.0 14 134-147 2-15 (174)
No 1
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=18.11 E-value=30 Score=28.59 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=19.2
Q ss_pred CCccEEEEecCCeeeecCCCCC
Q 018034 155 IKEEYILMAEPDHIIVKPIPNL 176 (362)
Q Consensus 155 i~e~~IlmlDpD~I~~rPl~~~ 176 (362)
.+.|-||-||+|+|+++++..+
T Consensus 93 ~~ydkvlYLDaD~lv~~~id~L 114 (263)
T d1ll2a_ 93 TQYSKCVFMDADTLVLANIDDL 114 (263)
T ss_dssp TTCSEEEEECTTEEECSCCGGG
T ss_pred cccceEEEeCCCEEEecCHHHH
Confidence 4568999999999999999765
No 2
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=14.53 E-value=35 Score=28.46 Aligned_cols=80 Identities=6% Similarity=-0.042 Sum_probs=40.6
Q ss_pred CccEEEEecCCeeeecCCCCC---CCCCccccccccccCCcccHHHHhhhCCCCCCCCcccCCCCCcceEEeHhHHHh--
Q 018034 156 KEEYILMAEPDHIIVKPIPNL---SKDGLGAAFPFFYIEPKKYESVLRKYFPKDMGPITNIDPIGNSPVVVGRDSLKK-- 230 (362)
Q Consensus 156 ~e~~IlmlDpD~I~~rPl~~~---a~~G~p~a~~f~Yi~p~~~e~il~k~~pe~~gp~~~~d~vG~~P~im~~dDL~~-- 230 (362)
+-+-||-||+|+|+++++..+ ..++..+|+.-.+..+... ....++ .-.. .....-.| ..+|..+.+++
T Consensus 95 ~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~-~~~~~~-~~~~---~~~yfNsG-Vml~n~~~~r~~~ 168 (282)
T d1ga8a_ 95 DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQE-GYKQKI-GMAD---GEYYFNAG-VLLINLKKWRRHD 168 (282)
T ss_dssp SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTST-THHHHT-TCCT---TSCCEEEE-EEEECHHHHTTSC
T ss_pred ccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhh-hhHHHh-CCCC---CCceeecc-eeeechhhhhhhh
Confidence 346799999999999998653 2345554443333222111 011111 1001 11232233 57887777764
Q ss_pred hhHHHHHHhhh
Q 018034 231 IAPVWMNVSLA 241 (362)
Q Consensus 231 iAP~W~~~t~~ 241 (362)
+...+.++..+
T Consensus 169 ~~~~~~~~~~~ 179 (282)
T d1ga8a_ 169 IFKMSSEWVEQ 179 (282)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44555555443
No 3
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.81 E-value=53 Score=24.58 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=13.4
Q ss_pred CCccEEEEecCCeee
Q 018034 155 IKEEYILMAEPDHII 169 (362)
Q Consensus 155 i~e~~IlmlDpD~I~ 169 (362)
.+.|||+.+|+|-++
T Consensus 80 a~ge~i~~lD~D~~~ 94 (265)
T d1omza_ 80 VETNAVLMVDDDTLI 94 (265)
T ss_dssp CCSSEEEEECTTEEE
T ss_pred CCcCEEEEeCcccCC
Confidence 478999999999887
No 4
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.29 E-value=58 Score=28.95 Aligned_cols=21 Identities=5% Similarity=0.224 Sum_probs=18.6
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 018034 156 KEEYILMAEPDHIIVKPIPNL 176 (362)
Q Consensus 156 ~e~~IlmlDpD~I~~rPl~~~ 176 (362)
+.||++-+|+||+|..++...
T Consensus 136 e~Dylf~~DaDm~f~~~vg~E 156 (287)
T d1o7qa_ 136 EVDFLFCMDVDQVFQDKFGVE 156 (287)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCeEEEEeCCceEecccccc
Confidence 459999999999999998764
No 5
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.15 E-value=59 Score=28.83 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=18.8
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 018034 156 KEEYILMAEPDHIIVKPIPNL 176 (362)
Q Consensus 156 ~e~~IlmlDpD~I~~rPl~~~ 176 (362)
+.||++-+|+||+|..++...
T Consensus 141 e~DyLf~~DaDm~f~~~vg~E 161 (283)
T d1lzia_ 141 EVDYLVCVDVDMEFRDHVGVE 161 (283)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCEEEEeecceEEecccccE
Confidence 569999999999999999764
No 6
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.43 E-value=71 Score=23.66 Aligned_cols=20 Identities=20% Similarity=0.561 Sum_probs=17.2
Q ss_pred eEEeHhHHHhhhHHHHHHhh
Q 018034 221 VVVGRDSLKKIAPVWMNVSL 240 (362)
Q Consensus 221 ~im~~dDL~~iAP~W~~~t~ 240 (362)
-+|.-+||.-|..+|+++-.
T Consensus 29 ~~iseedMvtvV~DWvn~Yi 48 (90)
T d1z8ua1 29 ALVSEEDMVTVVEDWMNFYI 48 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 35999999999999999654
No 7
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}
Probab=8.38 E-value=82 Score=26.10 Aligned_cols=15 Identities=20% Similarity=0.833 Sum_probs=13.5
Q ss_pred ccCchhHHHHHHHhC
Q 018034 139 VLNRPWAFVQWLEKA 153 (362)
Q Consensus 139 v~NKP~A~~qWL~~a 153 (362)
.+.||.-|.+|++..
T Consensus 3 ~~~~P~n~~~Wieen 17 (174)
T d1yfua1 3 TYGAPFNFPRWIDEH 17 (174)
T ss_dssp TTCSCCCHHHHHHHT
T ss_pred cccCCccHHHHHHhh
Confidence 578999999999986
No 8
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=7.98 E-value=92 Score=20.94 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHHHhhcCC
Q 018034 340 PESVVTLVKMVNEATANIP 358 (362)
Q Consensus 340 ~~~~~~lv~~~NeA~~~~p 358 (362)
.|+|-.+.+||||-+.+|-
T Consensus 34 d~EV~evMdlf~EDi~slt 52 (53)
T d1r4ga_ 34 DQEVKAVMELVEEDIESLT 52 (53)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 3577789999999998764
No 9
>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=7.93 E-value=90 Score=24.84 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.3
Q ss_pred CchhHHHHHHHhCCCCccEEEEecCCeeeec
Q 018034 141 NRPWAFVQWLEKADIKEEYILMAEPDHIIVK 171 (362)
Q Consensus 141 NKP~A~~qWL~~a~i~e~~IlmlDpD~I~~r 171 (362)
.|-.++.+.|++...+.++|++.|+|.-|+.
T Consensus 82 ~r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~ 112 (226)
T d1w77a1 82 ERQDSVYSGLQEIDVNSELVCIHDSARPLVN 112 (226)
T ss_dssp SHHHHHHHHHHTSCTTCSEEEEEETTCTTCC
T ss_pred hhhhhhhhhHhhhccccccceeccccccccc
Confidence 3567899999998888899999999865543
No 10
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=7.63 E-value=29 Score=27.54 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.8
Q ss_pred CCCCcccCchhHHH
Q 018034 134 DQGYIVLNRPWAFV 147 (362)
Q Consensus 134 dd~Y~v~NKP~A~~ 147 (362)
++.|.++|||.++.
T Consensus 2 ~~~Yi~lNKP~G~~ 15 (174)
T d1vioa1 2 EGQYFMLNKPQGCV 15 (174)
T ss_dssp CCCEEEEEECTTCB
T ss_pred CCEEEEEECCCCEE
Confidence 46799999999974
Done!