BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018035
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 184/342 (53%), Gaps = 15/342 (4%)
Query: 12 LPVPCVQDLAKKPLTNVPPQYIRADQESPFICNADL------AANVPVIDMSKLLSAD-- 63
+ V V+ LAK + ++P +YIR +E I + L VP ID+ + S D
Sbjct: 1 VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60
Query: 64 FMDSELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPNFFNLPMEEKKKYW--QQPGD 121
++ + + A +WG LINHG+ L+E++K FF+L +EEK+KY Q G
Sbjct: 61 IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120
Query: 122 IQGFGQAFVVSEEQKLDWADMFAMYTLPTYLRKPHLFPKLPVHFRDTLESYSAELRNLAL 181
IQG+G + +L+W D F P R ++PK P + + Y+ LR LA
Sbjct: 121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 180
Query: 182 KILYQMAKALKMDPNDIKDL---FEEGVQIMRMNYYPPCPQPKLVMGLTPHSDAGGLTIL 238
K+ ++ L ++P+ ++ EE + M++NYYP CPQP+L +G+ H+D LT +
Sbjct: 181 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 240
Query: 239 LQINEMDGLQIKKDGLWVPIKALPDAFIINIGDALEIVTNGSYPSIEHRATINSEKERIS 298
L N + GLQ+ +G WV K +PD+ +++IGD LEI++NG Y SI HR +N EK RIS
Sbjct: 241 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299
Query: 299 IATFYTPKLDGEI-GPAPSLMKPETPGLFKKITFGDYLKGYL 339
A F P D + P P ++ E+P F TF +++ L
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL 341
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 184/342 (53%), Gaps = 15/342 (4%)
Query: 12 LPVPCVQDLAKKPLTNVPPQYIRADQESPFICNADL------AANVPVIDMSKLLSAD-- 63
+ V V+ LAK + ++P +YIR +E I + L VP ID+ + S D
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61
Query: 64 FMDSELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPNFFNLPMEEKKKYW--QQPGD 121
++ + + A +WG LINHG+ L+E++K FF+L +EEK+KY Q G
Sbjct: 62 IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121
Query: 122 IQGFGQAFVVSEEQKLDWADMFAMYTLPTYLRKPHLFPKLPVHFRDTLESYSAELRNLAL 181
IQG+G + +L+W D F P R ++PK P + + Y+ LR LA
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181
Query: 182 KILYQMAKALKMDPNDIKDL---FEEGVQIMRMNYYPPCPQPKLVMGLTPHSDAGGLTIL 238
K+ ++ L ++P+ ++ EE + M++NYYP CPQP+L +G+ H+D LT +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241
Query: 239 LQINEMDGLQIKKDGLWVPIKALPDAFIINIGDALEIVTNGSYPSIEHRATINSEKERIS 298
L N + GLQ+ +G WV K +PD+ +++IGD LEI++NG Y SI HR +N EK RIS
Sbjct: 242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 299 IATFYTPKLDGEI-GPAPSLMKPETPGLFKKITFGDYLKGYL 339
A F P D + P P ++ E+P F TF +++ L
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL 342
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 180/342 (52%), Gaps = 15/342 (4%)
Query: 12 LPVPCVQDLAKKPLTNVPPQYIRADQESPFICNADL------AANVPVIDMSKLLSAD-- 63
+ V V+ LAK + ++P +YIR +E I + L VP ID+ + S D
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61
Query: 64 FMDSELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPNFFNLPMEEKKKYW--QQPGD 121
++ + + A +WG LINHG+ L E++K FF+L +EEK+KY Q G
Sbjct: 62 IRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGK 121
Query: 122 IQGFGQAFVVSEEQKLDWADMFAMYTLPTYLRKPHLFPKLPVHFRDTLESYSAELRNLAL 181
IQG+G + +L+W D F P R ++PK P + + Y+ LR LA
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181
Query: 182 KILYQMAKALKMDPNDIKDL---FEEGVQIMRMNYYPPCPQPKLVMGLTPHSDAGGLTIL 238
K+ ++ L ++P+ ++ EE + ++NYYP CPQP+L +G+ H+D LT +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFI 241
Query: 239 LQINEMDGLQIKKDGLWVPIKALPDAFIINIGDALEIVTNGSYPSIEHRATINSEKERIS 298
L N + GLQ+ +G WV K +PD+ + +IGD LEI++NG Y SI HR +N EK RIS
Sbjct: 242 LH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 299 IATFYTPKLDGEI-GPAPSLMKPETPGLFKKITFGDYLKGYL 339
A F P D + P P + E+P F TF +++ L
Sbjct: 301 WAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKL 342
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 155/303 (51%), Gaps = 14/303 (4%)
Query: 50 NVPVIDMSKLLSADFMDSELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPNFFNLPM 109
N P+I + K+ + + AC+ WGFF+L+NHG+ + + ++ +
Sbjct: 3 NFPIISLDKVNGVERA-ATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 110 EEKKKYWQQPGDIQGFGQAFVVSEEQKLDWADMFAMYTLPTYLRKPHLFPKLPVHFRDTL 169
E++ K ++G V +E DW F + LP + P L +R+
Sbjct: 62 EQRFKELVASKALEG-----VQAEVTDXDWESTFFLKHLP--ISNISEVPDLDEEYREVX 114
Query: 170 ESYSAELRNLALKILYQMAKALKMDPNDIKDLF--EEGVQI-MRMNYYPPCPQPKLVMGL 226
++ L LA ++L + + L ++ +K+ F +G +++ YPPCP+P L+ GL
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 227 TPHSDAGGLTILLQINEMDGLQIKKDGLWVPIKALPDAFIINIGDALEIVTNGSYPSIEH 286
H+DAGG+ +L Q +++ GLQ+ KDG W+ + + ++N+GD LE++TNG Y S+ H
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXH 234
Query: 287 RATINSEKERISIATFYTPKLDGEIGPAPSLMKPET---PGLFKKITFGDYLKGYLAREL 343
R + R S+A+FY P D I PAP+L++ E ++ K F DY K Y +
Sbjct: 235 RVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKF 294
Query: 344 HAK 346
AK
Sbjct: 295 QAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 130/284 (45%), Gaps = 22/284 (7%)
Query: 77 KEWGFFQLINHGVSNSLIEKMKVEIPNFFNLPMEEKKKYWQQPGDIQGFGQAFVVSEEQK 136
+ +GF L ++ + + I+ FF LP+E KK+Y G +G+ F V +
Sbjct: 31 ERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGY-IPFGVETAKG 89
Query: 137 LDWADMFAMYTLPTYLRKPHLF----------PKLPVHFRDTLESYSAELRNLALKILYQ 186
D D+ + L H F ++P D Y++ L K+L
Sbjct: 90 ADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNS-LDGXGGKVLEA 148
Query: 187 MAKALKMDPNDIKDLFEEGVQIMRMNYYPPCPQPKLVMGLTPHSDAGGLTILLQINEMDG 246
+A LK++ + K ++G ++R+ +YPP P+ + H D +T+LL E G
Sbjct: 149 IATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE-GG 207
Query: 247 LQI-KKDGLWVPIKALPDAFIINIGDALEIVTNGSYPSIEHRATINSEKERISIATFYTP 305
L++ +DG W+PI P +INIGD LE +TN PS HR +N ER + + TP
Sbjct: 208 LEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGVPRYSTP 266
Query: 306 KL-----DGEIGPAPSLMKPETPGLF-KKITFGDYLKGYLAREL 343
D EI + + E P + + IT ++L+ L RE+
Sbjct: 267 FFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRL-REI 309
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 121/268 (45%), Gaps = 36/268 (13%)
Query: 58 KLLSADFMDSELHK-FHHACKEWGFFQLINHGVSNSLIEKMKVEIPNFFNLPMEEKKKYW 116
KL + D+ ++ K F + +E GF L NH + L+E++ E FFN + + +
Sbjct: 3 KLETIDYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFN 62
Query: 117 QQPGDIQGFGQAFVVSEEQKLDWADMFAMYTLPTYLRKPHLFP--KLPVHFRDTLESYSA 174
++ D GF A + + D+ Y H++P ++P R + +Y
Sbjct: 63 RETHD--GFFPASISETAKGHTVKDIKEYY---------HVYPWGRIPDSLRANILAYYE 111
Query: 175 ELRNLALKILYQMAKALKMDPNDIKDLFE---------EGVQIMRMNYYPPCP--QPKLV 223
+ LA ++L + P++IK F ++R+ +YPP +
Sbjct: 112 KANTLASELLEWIET---YSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGA 168
Query: 224 MGLTPHSDAGGLTILLQINEMDGLQIK-KDGLWVPIKALPDAFIINIGDALEIVTNGSYP 282
+ H D +T+L NE GLQ+K KDG W+ + + IINIGD L+ ++G +P
Sbjct: 169 IRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFP 227
Query: 283 SIEHRATINSE-----KERISIATFYTP 305
S HR IN E K RIS+ F P
Sbjct: 228 STSHR-VINPEGTDKTKSRISLPLFLHP 254
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 135/326 (41%), Gaps = 46/326 (14%)
Query: 49 ANVPVIDMSKLLSADFMDS--ELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPNF-F 105
ANVP ID+S L D + A ++ GFF +NHG++ ++++ + F
Sbjct: 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEFHM 63
Query: 106 NLPMEEK-----KKYWQQPGDIQGFGQAFVVSEEQKLDWADMFAMYTLPTYL-RKPHLFP 159
++ EEK + Y ++ D G + ++ ++ Y P + P +
Sbjct: 64 SITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVE----SFCYLNPNFTPDHPRIQA 119
Query: 160 KLPVH-------------FRDTLESYSAELRNLALKILYQMAKALKMDPNDIKDLFE--- 203
K P H F+D E Y ++ L+ +L A AL + N F+
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 204 --EGVQIMRMNYYPPCPQPKLV-------MGLTPHSDAGGLTILLQINEMDGLQIKKDGL 254
V ++R Y P P+ + + H D +T+L Q N + LQ++
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAG 238
Query: 255 WVPIKALPDAFIINIGDALEIVTNGSYPSIEHRAT-INSEKERISIATFYTPKLDGEIGP 313
+ I+A ++IN G + +TN Y + HR +N+E++ S+ F D I P
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ--SLPFFVNLGYDSVIDP 296
Query: 314 APSLMKPETPGLFKKITFGDYLKGYL 339
+P + +++GDYL+ L
Sbjct: 297 FDP-REPNGKSDREPLSYGDYLQNGL 321
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 135/326 (41%), Gaps = 46/326 (14%)
Query: 49 ANVPVIDMSKLLSADFMDS--ELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPNF-F 105
ANVP ID+S L D + A ++ GFF +NHG++ ++++ + F
Sbjct: 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEFHM 63
Query: 106 NLPMEEK-----KKYWQQPGDIQGFGQAFVVSEEQKLDWADMFAMYTLPTYL-RKPHLFP 159
++ EEK + Y ++ D G + ++ ++ Y P + P +
Sbjct: 64 SITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVE----SFCYLNPNFTPDHPRIQA 119
Query: 160 KLPVH-------------FRDTLESYSAELRNLALKILYQMAKALKMDPNDIKDLFE--- 203
K P H F+D E Y ++ L+ +L A AL + N F+
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 204 --EGVQIMRMNYYPPCPQPKLV-------MGLTPHSDAGGLTILLQINEMDGLQIKKDGL 254
V ++R Y P P+ + + H D +T+L Q N + LQ++
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAG 238
Query: 255 WVPIKALPDAFIINIGDALEIVTNGSYPSIEHRAT-INSEKERISIATFYTPKLDGEIGP 313
+ I+A ++IN G + +TN Y + HR +N+E++ S+ F D I P
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ--SLPFFVNLGYDSVIDP 296
Query: 314 APSLMKPETPGLFKKITFGDYLKGYL 339
+P + +++GDYL+ L
Sbjct: 297 FDP-REPNGKSDREPLSYGDYLQNGL 321
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 108/282 (38%), Gaps = 26/282 (9%)
Query: 44 NADLAANVPVIDMSKLLSADFMDSELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPN 103
+ + VP +++L D +F ++ G F L + G++++ ++ K + +
Sbjct: 18 GSHMDTTVPTFSLAELQQGLHQD----EFRRCLRDKGLFYLTDCGLTDTELKSAKDLVID 73
Query: 104 FFNLPMEEKKKYWQQPGDIQGFGQAFVVSEEQKL-----DWADMFAMYTLPTYLRKPHLF 158
FF E +K+ P G + SE ++D Y++ T +LF
Sbjct: 74 FFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT---ADNLF 130
Query: 159 PKLPVHFRDTLESYSAELRNLALKILYQMAKALKMDPNDIKDLFEEGVQIMRMNYYPPCP 218
P F Y + + ++ +A +P+ + F + ++R Y+P P
Sbjct: 131 PS--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVP 188
Query: 219 QPKLV----MGLTPHSDAGGLTILLQI---NEMDGLQIKKDGLWVPIKALPDAFIINIGD 271
+ + + + PH D +T++ Q N LQ + G + + PDA ++ G
Sbjct: 189 EHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGA 248
Query: 272 ALEIVTNGSYPSIEH-----RATINSEKERISIATFYTPKLD 308
+VT G + H R + R S F P D
Sbjct: 249 IATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 106/276 (38%), Gaps = 26/276 (9%)
Query: 50 NVPVIDMSKLLSADFMDSELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPNFFNLPM 109
VP +++L D +F ++ G F L + G++++ ++ K + +FF
Sbjct: 4 TVPTFSLAELQQGLHQD----EFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGS 59
Query: 110 EEKKKYWQQPGDIQGFGQAFVVSEEQKL-----DWADMFAMYTLPTYLRKPHLFPKLPVH 164
E +K+ P G + SE ++D Y++ T +LFP
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT---ADNLFPS--GD 114
Query: 165 FRDTLESYSAELRNLALKILYQMAKALKMDPNDIKDLFEEGVQIMRMNYYPPCPQPKLV- 223
F Y + + ++ +A +P+ + F + ++R Y+P P+ +
Sbjct: 115 FERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE 174
Query: 224 ---MGLTPHSDAGGLTILLQI---NEMDGLQIKKDGLWVPIKALPDAFIINIGDALEIVT 277
+ + PH D +T++ Q N LQ + G + + PDA ++ G +VT
Sbjct: 175 EQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVT 234
Query: 278 NGSYPSIEH-----RATINSEKERISIATFYTPKLD 308
G + H R + R S F P D
Sbjct: 235 GGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 106/276 (38%), Gaps = 26/276 (9%)
Query: 50 NVPVIDMSKLLSADFMDSELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPNFFNLPM 109
VP +++L D +F ++ G F L + G++++ ++ K + +FF
Sbjct: 4 TVPTFSLAELQQGLHQD----EFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGS 59
Query: 110 EEKKKYWQQPGDIQGFGQAFVVSEEQKL-----DWADMFAMYTLPTYLRKPHLFPKLPVH 164
E +K+ P G + SE ++D Y++ T +LFP
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT---ADNLFPS--GD 114
Query: 165 FRDTLESYSAELRNLALKILYQMAKALKMDPNDIKDLFEEGVQIMRMNYYPPCPQPKLV- 223
F Y + + ++ +A +P+ + F + ++R Y+P P+ +
Sbjct: 115 FERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE 174
Query: 224 ---MGLTPHSDAGGLTILLQI---NEMDGLQIKKDGLWVPIKALPDAFIINIGDALEIVT 277
+ + PH D +T++ Q N LQ + G + + PDA ++ G +VT
Sbjct: 175 EQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVT 234
Query: 278 NGSYPSIEH-----RATINSEKERISIATFYTPKLD 308
G + H R + R S F P D
Sbjct: 235 GGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 106/277 (38%), Gaps = 26/277 (9%)
Query: 49 ANVPVIDMSKLLSADFMDSELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPNFFNLP 108
VP +++L D +F ++ G F L + G++++ ++ K + +FF
Sbjct: 3 TTVPTFSLAELQQGLHQD----EFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHG 58
Query: 109 MEEKKKYWQQPGDIQGFGQAFVVSEEQKL-----DWADMFAMYTLPTYLRKPHLFPKLPV 163
E +K+ P G + SE ++D Y++ T +LFP
Sbjct: 59 SEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT---ADNLFPS--G 113
Query: 164 HFRDTLESYSAELRNLALKILYQMAKALKMDPNDIKDLFEEGVQIMRMNYYPPCPQPKLV 223
F Y + + ++ +A +P+ + F + ++R Y+P P+ +
Sbjct: 114 DFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSA 173
Query: 224 ----MGLTPHSDAGGLTILLQI---NEMDGLQIKKDGLWVPIKALPDAFIINIGDALEIV 276
+ + PH D +T++ Q N LQ + G + + PDA ++ G +V
Sbjct: 174 EEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLV 233
Query: 277 TNGSYPSIEH-----RATINSEKERISIATFYTPKLD 308
T G + H R + R S F P D
Sbjct: 234 TGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 21/249 (8%)
Query: 50 NVPVIDMSKLLSADFMDSELHKFHHACKEWGFFQLINHGVSNSLIEKMKVEIPNFFNLPM 109
VP +++L D +F ++ G F L + G++++ ++ K + +FF
Sbjct: 4 TVPTFSLAELQQGLHQD----EFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGS 59
Query: 110 EEKKKYWQQPGDIQGFGQAFVVSEEQKL-----DWADMFAMYTLPTYLRKPHLFPKLPVH 164
E +K+ P G + SE ++D Y++ T +LFP
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT---ADNLFPS--GD 114
Query: 165 FRDTLESYSAELRNLALKILYQMAKALKMDPNDIKDLFEEGVQIMRMNYYPPCPQPKLV- 223
F Y + + ++ +A +P+ + F + ++R Y+P P+ +
Sbjct: 115 FERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE 174
Query: 224 ---MGLTPHSDAGGLTILLQI---NEMDGLQIKKDGLWVPIKALPDAFIINIGDALEIVT 277
+ + PH D +T++ Q N LQ + G + + PDA ++ G +VT
Sbjct: 175 EQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVT 234
Query: 278 NGSYPSIEH 286
G + H
Sbjct: 235 GGQVKAPRH 243
>pdb|2P1G|A Chain A, Crystal Structure Of A Putative Xylanase From Bacteroides
Fragilis
pdb|2P1G|B Chain B, Crystal Structure Of A Putative Xylanase From Bacteroides
Fragilis
Length = 249
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 40 PFICNADLAA---NVPVIDMSKLLSADFMDSELHKFHHACKE 78
P+I N D+ A N P +D+S + A ++ +LH H + KE
Sbjct: 170 PWIKNGDIIALTTNTPGLDVSHMGIAIYIKGQLHLLHASSKE 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,601,471
Number of Sequences: 62578
Number of extensions: 497933
Number of successful extensions: 1181
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 14
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)