Query 018037
Match_columns 362
No_of_seqs 299 out of 2331
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0225 Pyruvate dehydrogenase 100.0 4E-103 8E-108 739.6 27.0 344 16-362 11-358 (394)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.1E-89 2.5E-94 667.5 34.5 306 55-361 20-330 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 3.9E-84 8.5E-89 637.5 37.3 310 53-362 21-330 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 1E-79 2.2E-84 603.5 37.3 308 53-362 11-328 (341)
5 PLN02374 pyruvate dehydrogenas 100.0 7E-78 1.5E-82 604.0 35.9 308 53-362 77-394 (433)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 5.6E-78 1.2E-82 586.1 34.1 300 61-362 1-303 (315)
7 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 7.9E-75 1.7E-79 559.1 33.1 290 67-357 1-293 (293)
8 PF00676 E1_dh: Dehydrogenase 100.0 1.1E-74 2.3E-79 559.4 29.9 292 70-362 2-296 (300)
9 TIGR03181 PDH_E1_alph_x pyruva 100.0 3.1E-72 6.7E-77 551.1 35.7 296 56-362 18-316 (341)
10 KOG1182 Branched chain alpha-k 100.0 6.9E-64 1.5E-68 469.4 21.1 309 52-361 76-388 (432)
11 PRK09404 sucA 2-oxoglutarate d 100.0 4E-62 8.8E-67 523.8 32.6 316 33-360 155-516 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 3.8E-55 8.2E-60 468.3 31.0 323 33-361 154-518 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 8.5E-51 1.8E-55 383.5 18.7 230 77-311 1-265 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 1.8E-36 3.9E-41 318.3 29.0 309 44-360 477-821 (1228)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 7E-35 1.5E-39 304.5 21.8 229 48-297 4-249 (581)
16 KOG0450 2-oxoglutarate dehydro 100.0 1.5E-29 3.1E-34 257.1 22.9 310 44-360 232-575 (1017)
17 COG0567 SucA 2-oxoglutarate de 100.0 1.7E-28 3.8E-33 258.4 24.8 317 33-358 141-497 (906)
18 KOG0451 Predicted 2-oxoglutara 100.0 1.9E-28 4.2E-33 244.2 16.9 308 44-359 140-492 (913)
19 TIGR00232 tktlase_bact transke 99.9 2.1E-22 4.6E-27 213.2 26.0 133 163-298 103-249 (653)
20 PRK12754 transketolase; Review 99.9 2.3E-22 4.9E-27 212.4 26.1 150 163-315 107-274 (663)
21 cd02007 TPP_DXS Thiamine pyrop 99.9 4.6E-23 1E-27 188.0 17.8 126 164-295 69-194 (195)
22 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 1.2E-22 2.7E-27 213.8 21.1 229 49-299 3-282 (617)
23 cd02012 TPP_TK Thiamine pyroph 99.9 1.5E-22 3.1E-27 191.8 17.8 135 164-300 99-236 (255)
24 PTZ00089 transketolase; Provis 99.9 8E-22 1.7E-26 209.1 25.0 150 164-316 110-277 (661)
25 PRK05899 transketolase; Review 99.9 2E-21 4.4E-26 205.2 25.9 148 164-315 112-276 (624)
26 COG3959 Transketolase, N-termi 99.9 8E-22 1.7E-26 179.3 16.8 217 63-292 6-242 (243)
27 PRK05444 1-deoxy-D-xylulose-5- 99.9 2E-21 4.3E-26 203.7 21.6 231 47-299 7-250 (580)
28 PRK12753 transketolase; Review 99.9 5.5E-21 1.2E-25 202.6 24.4 134 163-299 107-254 (663)
29 PLN02790 transketolase 99.9 7.1E-21 1.5E-25 201.7 23.9 134 163-299 98-246 (654)
30 PRK12571 1-deoxy-D-xylulose-5- 99.8 8.3E-20 1.8E-24 193.1 22.3 234 47-299 9-291 (641)
31 PLN02582 1-deoxy-D-xylulose-5- 99.8 9.1E-20 2E-24 192.6 22.3 234 47-299 34-328 (677)
32 cd02017 TPP_E1_EcPDC_like Thia 99.8 5.6E-19 1.2E-23 174.3 25.6 163 164-329 112-360 (386)
33 cd02011 TPP_PK Thiamine pyroph 99.8 2E-20 4.4E-25 173.1 14.2 165 98-279 2-174 (227)
34 PF00456 Transketolase_N: Tran 99.8 1E-19 2.2E-24 178.1 19.7 182 163-348 104-314 (332)
35 PLN02234 1-deoxy-D-xylulose-5- 99.8 2.9E-19 6.2E-24 187.5 24.1 237 47-301 67-331 (641)
36 PRK11864 2-ketoisovalerate fer 99.8 4.8E-19 1E-23 170.5 17.0 165 120-290 14-206 (300)
37 TIGR00759 aceE pyruvate dehydr 99.8 5.1E-17 1.1E-21 173.1 27.0 187 105-297 116-394 (885)
38 PF13292 DXP_synthase_N: 1-deo 99.8 2.2E-18 4.7E-23 161.5 13.3 218 49-290 3-270 (270)
39 TIGR03186 AKGDH_not_PDH alpha- 99.8 1E-16 2.2E-21 172.3 26.9 132 165-298 184-395 (889)
40 COG1154 Dxs Deoxyxylulose-5-ph 99.8 2.4E-17 5.3E-22 168.3 18.7 229 47-299 5-287 (627)
41 cd02013 TPP_Xsc_like Thiamine 99.8 6.6E-18 1.4E-22 154.0 11.7 120 167-294 50-182 (196)
42 PRK13012 2-oxoacid dehydrogena 99.7 5.5E-16 1.2E-20 167.2 27.2 201 89-297 113-408 (896)
43 cd02004 TPP_BZL_OCoD_HPCL Thia 99.7 2.4E-17 5.3E-22 146.8 12.2 113 167-290 45-171 (172)
44 PLN02225 1-deoxy-D-xylulose-5- 99.7 1.5E-16 3.3E-21 167.6 19.1 223 47-294 79-367 (701)
45 cd02006 TPP_Gcl Thiamine pyrop 99.7 5.2E-17 1.1E-21 148.6 11.7 120 167-294 54-197 (202)
46 cd02002 TPP_BFDC Thiamine pyro 99.7 9.2E-17 2E-21 143.5 12.2 110 170-290 49-178 (178)
47 COG0021 TktA Transketolase [Ca 99.7 1.5E-15 3.3E-20 156.1 21.8 150 163-315 109-276 (663)
48 cd00568 TPP_enzymes Thiamine p 99.7 9.6E-17 2.1E-21 141.2 11.1 114 166-290 42-168 (168)
49 PRK09405 aceE pyruvate dehydro 99.7 1E-14 2.2E-19 157.0 26.3 223 60-296 76-399 (891)
50 cd02014 TPP_POX Thiamine pyrop 99.7 3.2E-16 6.9E-21 140.6 12.0 115 167-292 48-174 (178)
51 cd02008 TPP_IOR_alpha Thiamine 99.7 6.4E-16 1.4E-20 138.7 13.4 116 167-290 48-176 (178)
52 KOG0523 Transketolase [Carbohy 99.7 6E-16 1.3E-20 157.4 14.6 131 164-296 112-246 (632)
53 cd02010 TPP_ALS Thiamine pyrop 99.7 3.5E-16 7.6E-21 140.5 11.5 115 167-292 45-171 (177)
54 cd02003 TPP_IolD Thiamine pyro 99.7 7.4E-16 1.6E-20 141.4 13.1 116 167-293 45-186 (205)
55 PRK06163 hypothetical protein; 99.7 1E-15 2.2E-20 140.4 13.8 130 168-313 55-190 (202)
56 cd03371 TPP_PpyrDC Thiamine py 99.7 1.4E-15 3E-20 138.0 13.2 116 169-295 47-167 (188)
57 cd03372 TPP_ComE Thiamine pyro 99.6 2.9E-15 6.2E-20 134.9 14.2 114 169-295 41-159 (179)
58 PF02775 TPP_enzyme_C: Thiamin 99.6 3.5E-16 7.6E-21 136.7 7.8 113 167-288 25-153 (153)
59 cd02015 TPP_AHAS Thiamine pyro 99.6 1.5E-15 3.2E-20 137.2 11.8 114 168-292 48-175 (186)
60 PRK05261 putative phosphoketol 99.6 5E-15 1.1E-19 157.7 16.6 200 89-295 47-287 (785)
61 cd02001 TPP_ComE_PpyrDC Thiami 99.6 2.1E-15 4.5E-20 133.1 10.9 111 169-291 41-155 (157)
62 cd02005 TPP_PDC_IPDC Thiamine 99.6 3.6E-15 7.7E-20 134.6 12.1 116 167-292 47-175 (183)
63 PRK07524 hypothetical protein; 99.6 2E-15 4.3E-20 157.0 11.9 118 167-295 404-533 (535)
64 TIGR03846 sulfopy_beta sulfopy 99.6 6.9E-15 1.5E-19 132.7 13.5 111 169-292 41-157 (181)
65 COG0028 IlvB Thiamine pyrophos 99.6 4E-15 8.6E-20 155.0 12.3 116 167-293 405-533 (550)
66 PRK12474 hypothetical protein; 99.6 9.4E-15 2E-19 151.4 12.8 113 167-290 386-518 (518)
67 TIGR01504 glyox_carbo_lig glyo 99.6 7.9E-15 1.7E-19 154.3 12.1 118 167-292 415-556 (588)
68 PRK06154 hypothetical protein; 99.6 8.7E-15 1.9E-19 153.3 12.4 117 168-292 429-556 (565)
69 cd02009 TPP_SHCHC_synthase Thi 99.6 6.2E-15 1.3E-19 132.0 9.6 111 168-290 49-174 (175)
70 cd03375 TPP_OGFOR Thiamine pyr 99.6 2.3E-14 4.9E-19 130.6 12.4 113 169-290 50-183 (193)
71 PRK06725 acetolactate synthase 99.6 1.2E-14 2.7E-19 152.3 11.6 115 167-292 419-546 (570)
72 PRK08327 acetolactate synthase 99.6 1.6E-14 3.5E-19 151.3 11.9 118 167-290 427-566 (569)
73 PRK06546 pyruvate dehydrogenas 99.6 2.2E-14 4.8E-19 150.6 12.5 116 167-293 405-532 (578)
74 cd03376 TPP_PFOR_porB_like Thi 99.6 2.4E-14 5.1E-19 134.3 11.1 122 166-296 58-205 (235)
75 PRK07525 sulfoacetaldehyde ace 99.6 1.4E-14 3.1E-19 152.2 10.8 119 168-294 433-565 (588)
76 PRK07979 acetolactate synthase 99.5 1.9E-14 4E-19 151.0 11.3 118 167-292 418-549 (574)
77 PRK08266 hypothetical protein; 99.5 2.4E-14 5.1E-19 149.1 11.8 118 168-296 400-530 (542)
78 PRK09107 acetolactate synthase 99.5 2E-14 4.4E-19 151.4 11.3 115 167-292 427-555 (595)
79 PRK07586 hypothetical protein; 99.5 3E-14 6.6E-19 147.4 12.3 113 167-290 382-514 (514)
80 PRK07092 benzoylformate decarb 99.5 4.9E-14 1.1E-18 146.4 13.3 113 167-290 404-529 (530)
81 PRK05778 2-oxoglutarate ferred 99.5 1.2E-13 2.6E-18 133.8 15.0 133 168-314 68-223 (301)
82 PRK07064 hypothetical protein; 99.5 4E-14 8.7E-19 147.4 12.3 118 164-292 399-529 (544)
83 TIGR02418 acolac_catab acetola 99.5 3.8E-14 8.3E-19 147.5 11.8 115 167-292 405-531 (539)
84 PRK05858 hypothetical protein; 99.5 3.7E-14 8E-19 147.8 11.5 114 168-292 405-531 (542)
85 PRK11269 glyoxylate carboligas 99.5 3.4E-14 7.4E-19 149.5 10.9 118 167-292 416-557 (591)
86 PRK07418 acetolactate synthase 99.5 3.8E-14 8.3E-19 149.9 11.2 115 167-292 431-560 (616)
87 PRK09124 pyruvate dehydrogenas 99.5 6.4E-14 1.4E-18 146.9 12.6 115 167-292 405-531 (574)
88 PRK06965 acetolactate synthase 99.5 5.5E-14 1.2E-18 147.9 12.1 116 167-292 434-563 (587)
89 TIGR03457 sulphoacet_xsc sulfo 99.5 4.7E-14 1E-18 148.1 11.1 119 168-294 428-560 (579)
90 PRK08155 acetolactate synthase 99.5 5.8E-14 1.3E-18 146.9 11.7 115 167-292 416-544 (564)
91 CHL00099 ilvB acetohydroxyacid 99.5 5.9E-14 1.3E-18 147.6 11.5 115 167-292 427-556 (585)
92 PRK06112 acetolactate synthase 99.5 8.3E-14 1.8E-18 146.2 12.3 114 168-292 435-561 (578)
93 TIGR00118 acolac_lg acetolacta 99.5 7.5E-14 1.6E-18 145.9 11.2 115 167-292 409-537 (558)
94 TIGR02720 pyruv_oxi_spxB pyruv 99.5 9.9E-14 2.2E-18 145.6 12.1 116 168-292 406-533 (575)
95 PRK08979 acetolactate synthase 99.5 7.2E-14 1.6E-18 146.5 11.0 116 167-292 418-547 (572)
96 TIGR03393 indolpyr_decarb indo 99.5 6.3E-14 1.4E-18 145.9 10.4 114 167-291 401-527 (539)
97 PRK08527 acetolactate synthase 99.5 1.1E-13 2.3E-18 145.0 12.1 116 167-293 411-540 (563)
98 PRK06466 acetolactate synthase 99.5 8.3E-14 1.8E-18 146.1 11.3 116 167-292 420-549 (574)
99 PRK08273 thiamine pyrophosphat 99.5 1E-13 2.3E-18 146.0 12.1 117 167-293 412-548 (597)
100 PRK06457 pyruvate dehydrogenas 99.5 1.2E-13 2.6E-18 144.2 12.1 115 167-292 393-520 (549)
101 PRK09628 oorB 2-oxoglutarate-a 99.5 1.5E-13 3.2E-18 131.7 11.6 113 169-292 67-202 (277)
102 PRK08199 thiamine pyrophosphat 99.5 1.8E-13 4E-18 143.0 13.2 115 167-292 412-539 (557)
103 PRK06456 acetolactate synthase 99.5 1.1E-13 2.3E-18 145.2 11.1 115 167-292 418-546 (572)
104 PRK06048 acetolactate synthase 99.5 1.6E-13 3.6E-18 143.5 12.4 115 167-292 411-539 (561)
105 cd02018 TPP_PFOR Thiamine pyro 99.5 1.3E-13 2.8E-18 129.5 10.4 117 168-291 62-203 (237)
106 PRK08617 acetolactate synthase 99.5 1.1E-13 2.4E-18 144.5 10.6 115 167-292 411-537 (552)
107 PLN02573 pyruvate decarboxylas 99.5 1.2E-13 2.6E-18 145.1 10.9 116 167-291 425-552 (578)
108 PRK08322 acetolactate synthase 99.5 1.8E-13 4E-18 142.5 12.2 115 167-292 403-529 (547)
109 PRK08611 pyruvate oxidase; Pro 99.5 1.8E-13 3.8E-18 143.7 11.8 115 168-293 406-532 (576)
110 PLN02470 acetolactate synthase 99.5 1.4E-13 3E-18 144.7 11.0 115 167-292 423-558 (585)
111 PRK07710 acetolactate synthase 99.5 2.6E-13 5.6E-18 142.3 12.5 115 167-292 421-549 (571)
112 PRK06882 acetolactate synthase 99.5 3.4E-13 7.4E-18 141.4 12.6 116 167-292 418-547 (574)
113 PRK11866 2-oxoacid ferredoxin 99.5 5E-13 1.1E-17 128.1 12.5 115 167-290 56-191 (279)
114 PRK08978 acetolactate synthase 99.5 3.5E-13 7.6E-18 140.6 11.9 115 167-292 398-526 (548)
115 TIGR03297 Ppyr-DeCO2ase phosph 99.5 8.1E-13 1.7E-17 131.2 13.9 132 168-313 219-355 (361)
116 TIGR03254 oxalate_oxc oxalyl-C 99.4 7.1E-13 1.5E-17 138.5 13.4 114 167-292 414-539 (554)
117 PRK11867 2-oxoglutarate ferred 99.4 1.3E-12 2.7E-17 126.0 13.1 115 167-290 66-201 (286)
118 PRK11869 2-oxoacid ferredoxin 99.4 6.9E-13 1.5E-17 127.1 11.1 116 167-290 57-192 (280)
119 PRK06276 acetolactate synthase 99.4 7.1E-13 1.5E-17 139.4 11.7 114 168-292 417-544 (586)
120 PRK09259 putative oxalyl-CoA d 99.4 1.1E-12 2.4E-17 137.5 13.0 114 167-292 421-547 (569)
121 TIGR02177 PorB_KorB 2-oxoacid: 99.4 1.4E-12 3E-17 125.5 12.5 114 167-290 50-185 (287)
122 PRK07789 acetolactate synthase 99.4 4.6E-13 1E-17 141.5 10.0 116 167-292 444-577 (612)
123 PRK07282 acetolactate synthase 99.4 4.7E-13 1E-17 140.3 10.0 114 167-292 415-542 (566)
124 TIGR03394 indol_phenyl_DC indo 99.4 9.4E-13 2E-17 137.2 11.2 114 167-291 400-521 (535)
125 PRK07449 2-succinyl-5-enolpyru 99.4 8.6E-13 1.9E-17 138.2 8.9 112 168-291 423-549 (568)
126 TIGR03336 IOR_alpha indolepyru 99.4 5.3E-12 1.2E-16 133.1 12.9 118 165-290 398-529 (595)
127 PRK11865 pyruvate ferredoxin o 99.2 1.7E-10 3.6E-15 111.6 15.2 129 164-297 63-219 (299)
128 COG3960 Glyoxylate carboligase 99.2 1.1E-11 2.4E-16 119.2 6.8 158 134-300 375-565 (592)
129 COG3961 Pyruvate decarboxylase 99.2 2.1E-10 4.5E-15 116.0 12.0 159 98-292 363-536 (557)
130 KOG4166 Thiamine pyrophosphate 99.2 3.6E-10 7.9E-15 111.6 13.2 226 36-296 402-652 (675)
131 PLN02980 2-oxoglutarate decarb 99.1 1.5E-10 3.3E-15 134.2 10.2 115 166-292 755-890 (1655)
132 KOG1185 Thiamine pyrophosphate 99.1 7.4E-10 1.6E-14 111.0 11.6 116 167-292 427-561 (571)
133 COG2609 AceE Pyruvate dehydrog 98.8 2E-07 4.3E-12 97.2 18.5 166 167-341 189-435 (887)
134 COG3962 Acetolactate synthase 98.7 1.4E-07 3.1E-12 94.4 11.4 115 167-292 441-576 (617)
135 COG1013 PorB Pyruvate:ferredox 98.6 2.4E-06 5.1E-11 82.9 16.0 116 166-290 66-203 (294)
136 KOG1184 Thiamine pyrophosphate 98.5 3.1E-07 6.7E-12 93.1 9.7 115 167-291 412-539 (561)
137 PF09364 XFP_N: XFP N-terminal 98.3 2.6E-06 5.5E-11 83.6 7.8 191 89-296 45-286 (379)
138 cd03377 TPP_PFOR_PNO Thiamine 98.0 0.0014 2.9E-08 65.2 20.7 94 193-291 152-267 (365)
139 COG4231 Indolepyruvate ferredo 97.6 0.00024 5.2E-09 74.2 8.5 112 168-289 426-552 (640)
140 COG1165 MenD 2-succinyl-6-hydr 97.5 0.00021 4.6E-09 73.7 7.4 112 168-292 421-547 (566)
141 TIGR02176 pyruv_ox_red pyruvat 97.2 0.038 8.2E-07 63.1 20.6 94 193-291 952-1067(1165)
142 COG3957 Phosphoketolase [Carbo 97.1 0.0016 3.5E-08 68.8 8.3 111 155-270 138-256 (793)
143 cd06586 TPP_enzyme_PYR Pyrimid 96.1 0.068 1.5E-06 45.8 10.6 103 176-288 48-152 (154)
144 PRK09193 indolepyruvate ferred 96.1 0.023 4.9E-07 64.3 9.3 113 168-289 479-615 (1165)
145 PRK13030 2-oxoacid ferredoxin 96.1 0.021 4.5E-07 64.7 8.8 113 168-289 466-601 (1159)
146 cd07039 TPP_PYR_POX Pyrimidine 96.0 0.091 2E-06 46.5 11.1 100 178-288 53-156 (164)
147 cd07034 TPP_PYR_PFOR_IOR-alpha 95.7 0.14 3.1E-06 44.5 10.8 100 176-288 54-158 (160)
148 cd07035 TPP_PYR_POX_like Pyrim 95.7 0.13 2.8E-06 44.4 10.5 105 175-288 46-153 (155)
149 PRK13029 2-oxoacid ferredoxin 95.2 0.078 1.7E-06 60.1 9.0 116 168-289 493-629 (1186)
150 TIGR03845 sulfopyru_alph sulfo 94.9 0.58 1.2E-05 41.3 12.2 103 173-288 44-152 (157)
151 PF02776 TPP_enzyme_N: Thiamin 94.8 0.14 3.1E-06 45.3 8.2 106 175-289 51-160 (172)
152 cd07033 TPP_PYR_DXS_TK_like Py 94.6 0.39 8.6E-06 42.0 10.4 99 176-288 52-154 (156)
153 PRK08659 2-oxoglutarate ferred 94.5 0.38 8.2E-06 48.4 11.2 114 175-299 60-178 (376)
154 PRK07119 2-ketoisovalerate fer 94.1 0.45 9.7E-06 47.5 10.7 111 175-298 60-177 (352)
155 cd07038 TPP_PYR_PDC_IPDC_like 93.9 0.71 1.5E-05 40.7 10.6 104 176-288 48-160 (162)
156 cd07037 TPP_PYR_MenD Pyrimidin 93.4 0.47 1E-05 42.0 8.5 103 176-289 48-161 (162)
157 PF01855 POR_N: Pyruvate flavo 92.2 0.54 1.2E-05 44.1 7.5 108 176-298 49-161 (230)
158 PRK09627 oorA 2-oxoglutarate-a 92.2 0.99 2.1E-05 45.5 9.9 113 175-299 59-177 (375)
159 PRK08611 pyruvate oxidase; Pro 92.2 1.3 2.7E-05 47.0 11.2 103 177-289 57-162 (576)
160 cd07036 TPP_PYR_E1-PDHc-beta_l 91.9 1 2.2E-05 40.1 8.6 98 176-287 57-164 (167)
161 PRK06457 pyruvate dehydrogenas 91.6 1.6 3.4E-05 45.9 11.1 103 178-290 54-159 (549)
162 PRK08366 vorA 2-ketoisovalerat 91.3 2.1 4.6E-05 43.3 11.2 111 175-298 61-173 (390)
163 PRK08978 acetolactate synthase 90.6 1.8 3.9E-05 45.4 10.3 104 176-290 51-159 (548)
164 TIGR03254 oxalate_oxc oxalyl-C 90.6 2 4.3E-05 45.2 10.6 106 177-290 54-163 (554)
165 PRK07979 acetolactate synthase 90.5 2 4.3E-05 45.5 10.6 104 177-290 56-163 (574)
166 TIGR03710 OAFO_sf 2-oxoacid:ac 90.5 1.8 3.8E-05 46.0 10.1 109 175-292 249-362 (562)
167 PRK08367 porA pyruvate ferredo 90.5 2.8 6.1E-05 42.5 11.1 111 175-298 62-176 (394)
168 PRK07525 sulfoacetaldehyde ace 90.2 2.2 4.7E-05 45.4 10.6 102 177-289 57-162 (588)
169 PRK07524 hypothetical protein; 90.2 2.7 5.8E-05 44.0 11.1 106 176-289 52-162 (535)
170 PRK08322 acetolactate synthase 89.9 2.4 5.1E-05 44.5 10.5 104 177-290 52-159 (547)
171 PRK07789 acetolactate synthase 89.9 2.5 5.5E-05 45.1 10.8 103 177-290 83-190 (612)
172 TIGR03297 Ppyr-DeCO2ase phosph 89.8 1.8 4E-05 43.3 9.1 110 172-289 35-151 (361)
173 PRK07586 hypothetical protein; 89.7 2.4 5.2E-05 44.1 10.3 103 177-290 53-160 (514)
174 PRK06725 acetolactate synthase 89.7 2.5 5.4E-05 44.8 10.5 103 177-290 66-173 (570)
175 PRK08266 hypothetical protein; 89.6 3 6.5E-05 43.7 11.0 105 178-291 58-168 (542)
176 PRK09259 putative oxalyl-CoA d 89.6 2.9 6.2E-05 44.2 10.9 104 177-289 61-169 (569)
177 PRK06466 acetolactate synthase 89.5 2.6 5.7E-05 44.6 10.5 104 178-291 57-164 (574)
178 PRK06112 acetolactate synthase 89.5 2.8 6.1E-05 44.3 10.8 103 177-290 63-170 (578)
179 PRK07418 acetolactate synthase 89.5 3 6.6E-05 44.5 11.1 103 177-290 74-181 (616)
180 PRK06456 acetolactate synthase 89.4 2.8 6.1E-05 44.2 10.7 103 176-289 56-163 (572)
181 PRK11269 glyoxylate carboligas 89.4 3.1 6.7E-05 44.2 11.0 105 177-290 56-164 (591)
182 TIGR00204 dxs 1-deoxy-D-xylulo 89.3 2.4 5.2E-05 45.5 10.1 109 168-288 356-467 (617)
183 PRK08155 acetolactate synthase 89.2 2.8 6.2E-05 44.1 10.5 104 177-290 65-172 (564)
184 PLN02470 acetolactate synthase 89.1 2.7 5.9E-05 44.5 10.3 104 176-290 64-172 (585)
185 PRK11892 pyruvate dehydrogenas 89.1 2.4 5.1E-05 44.0 9.5 98 176-287 202-309 (464)
186 TIGR03457 sulphoacet_xsc sulfo 88.9 3 6.5E-05 44.1 10.5 102 177-289 53-158 (579)
187 PRK07710 acetolactate synthase 88.9 3.5 7.5E-05 43.6 10.9 104 176-290 66-174 (571)
188 TIGR02720 pyruv_oxi_spxB pyruv 88.8 3.4 7.4E-05 43.7 10.7 103 178-291 53-159 (575)
189 PRK12474 hypothetical protein; 88.7 3.5 7.6E-05 43.0 10.7 103 177-290 57-164 (518)
190 PRK07064 hypothetical protein; 88.7 3.8 8.2E-05 42.9 11.0 106 177-290 55-165 (544)
191 PRK08617 acetolactate synthase 88.5 3.7 8.1E-05 43.1 10.8 104 178-290 57-163 (552)
192 PRK08199 thiamine pyrophosphat 88.5 3.1 6.8E-05 43.7 10.2 102 177-289 60-166 (557)
193 TIGR00118 acolac_lg acetolacta 88.5 3.9 8.3E-05 43.1 10.9 102 177-289 53-159 (558)
194 COG0028 IlvB Thiamine pyrophos 88.2 3.7 8E-05 43.5 10.4 101 176-289 52-159 (550)
195 PRK06882 acetolactate synthase 88.1 3.9 8.5E-05 43.2 10.7 103 177-290 56-163 (574)
196 PRK09107 acetolactate synthase 88.1 3.4 7.3E-05 44.1 10.2 105 176-290 62-170 (595)
197 TIGR02418 acolac_catab acetola 88.1 4.2 9.1E-05 42.6 10.8 102 178-290 51-157 (539)
198 PRK05858 hypothetical protein; 88.0 4.1 8.9E-05 42.8 10.7 103 177-290 56-163 (542)
199 TIGR01504 glyox_carbo_lig glyo 87.7 4.2 9.1E-05 43.2 10.6 104 178-290 56-163 (588)
200 PF02779 Transket_pyr: Transke 87.2 7.3 0.00016 34.6 10.4 111 169-288 53-170 (178)
201 PRK09622 porA pyruvate flavodo 87.1 5.6 0.00012 40.5 10.7 110 175-297 68-181 (407)
202 PRK07282 acetolactate synthase 87.0 4.6 0.0001 42.7 10.5 104 176-290 61-169 (566)
203 PRK06276 acetolactate synthase 86.9 5.3 0.00011 42.4 10.8 104 176-290 51-159 (586)
204 TIGR03394 indol_phenyl_DC indo 86.6 4.9 0.00011 42.2 10.3 105 178-290 53-164 (535)
205 PRK08979 acetolactate synthase 86.6 4.8 0.0001 42.6 10.3 104 176-290 55-163 (572)
206 PLN02683 pyruvate dehydrogenas 86.5 4.2 9E-05 40.7 9.2 97 176-287 87-194 (356)
207 PLN02234 1-deoxy-D-xylulose-5- 86.4 3.7 7.9E-05 44.3 9.2 112 168-293 403-517 (641)
208 PRK08273 thiamine pyrophosphat 86.2 4.5 9.8E-05 43.0 9.9 104 177-291 56-164 (597)
209 CHL00099 ilvB acetohydroxyacid 86.0 6.2 0.00014 41.9 10.8 102 178-290 66-172 (585)
210 PRK06048 acetolactate synthase 85.6 6.7 0.00014 41.4 10.7 104 176-290 58-166 (561)
211 PRK08527 acetolactate synthase 85.5 6.9 0.00015 41.3 10.8 103 177-290 55-162 (563)
212 TIGR00232 tktlase_bact transke 85.2 5 0.00011 43.4 9.7 109 168-288 400-512 (653)
213 PRK08327 acetolactate synthase 85.2 4 8.6E-05 43.2 8.8 105 177-289 64-179 (569)
214 KOG4166 Thiamine pyrophosphate 84.9 6.3 0.00014 40.3 9.4 97 179-288 145-248 (675)
215 PLN02582 1-deoxy-D-xylulose-5- 84.9 5.1 0.00011 43.5 9.5 109 168-288 402-513 (677)
216 PRK06965 acetolactate synthase 84.9 8.1 0.00018 41.0 11.0 102 178-290 74-180 (587)
217 PLN02225 1-deoxy-D-xylulose-5- 84.5 4.4 9.5E-05 44.1 8.7 109 168-288 427-538 (701)
218 PRK12571 1-deoxy-D-xylulose-5- 83.8 5.8 0.00013 42.8 9.4 109 168-289 365-477 (641)
219 PRK09124 pyruvate dehydrogenas 83.7 9.1 0.0002 40.4 10.8 102 177-289 55-160 (574)
220 PLN02573 pyruvate decarboxylas 83.5 9.5 0.0002 40.5 10.8 104 178-290 69-181 (578)
221 PRK06546 pyruvate dehydrogenas 83.4 9.6 0.00021 40.4 10.8 102 178-290 56-161 (578)
222 PRK05444 1-deoxy-D-xylulose-5- 83.0 7.5 0.00016 41.4 9.8 108 168-288 325-436 (580)
223 COG0674 PorA Pyruvate:ferredox 82.9 11 0.00024 37.8 10.4 109 174-294 58-169 (365)
224 PRK12315 1-deoxy-D-xylulose-5- 82.1 7.2 0.00016 41.6 9.2 109 168-288 324-434 (581)
225 PTZ00089 transketolase; Provis 81.5 9.7 0.00021 41.3 10.1 109 168-288 407-519 (661)
226 PRK07092 benzoylformate decarb 81.5 12 0.00027 39.0 10.7 104 177-290 62-170 (530)
227 PRK09212 pyruvate dehydrogenas 81.2 8.7 0.00019 37.9 8.9 104 176-293 64-177 (327)
228 PRK12753 transketolase; Review 80.3 12 0.00025 40.7 10.2 109 168-288 406-518 (663)
229 PRK06154 hypothetical protein; 80.3 10 0.00022 40.1 9.6 90 193-290 83-175 (565)
230 COG0021 TktA Transketolase [Ca 79.9 6.6 0.00014 42.0 7.8 108 169-289 407-519 (663)
231 COG1154 Dxs Deoxyxylulose-5-ph 79.3 12 0.00025 40.0 9.3 101 176-288 371-473 (627)
232 PTZ00182 3-methyl-2-oxobutanat 79.3 11 0.00024 37.7 8.9 98 176-287 95-202 (355)
233 TIGR03336 IOR_alpha indolepyru 79.2 16 0.00034 39.1 10.6 109 176-299 59-170 (595)
234 TIGR00173 menD 2-succinyl-5-en 78.5 6.3 0.00014 40.1 7.2 104 178-290 53-165 (432)
235 PLN02790 transketolase 77.5 14 0.00031 39.9 9.8 109 168-288 396-509 (654)
236 COG3958 Transketolase, C-termi 77.1 13 0.00028 36.2 8.3 107 168-288 53-165 (312)
237 PRK12754 transketolase; Review 77.0 17 0.00036 39.6 10.0 109 168-288 406-518 (663)
238 PF09851 SHOCT: Short C-termin 76.2 5.4 0.00012 25.4 3.8 28 319-347 3-30 (31)
239 PRK05899 transketolase; Review 72.5 24 0.00052 37.9 9.9 108 169-288 372-483 (624)
240 PLN02980 2-oxoglutarate decarb 66.6 20 0.00043 43.1 8.4 102 177-289 353-465 (1655)
241 CHL00144 odpB pyruvate dehydro 65.4 50 0.0011 32.6 9.7 32 253-287 139-171 (327)
242 COG4032 Predicted thiamine-pyr 64.9 21 0.00045 31.3 6.0 104 175-288 54-161 (172)
243 smart00861 Transket_pyr Transk 59.9 95 0.0021 26.9 9.7 107 169-288 54-164 (168)
244 PF01380 SIS: SIS domain SIS d 58.8 30 0.00066 28.1 6.0 40 190-231 52-91 (131)
245 TIGR03393 indolpyr_decarb indo 58.6 50 0.0011 34.6 8.9 48 176-230 52-99 (539)
246 PRK11032 hypothetical protein; 49.6 56 0.0012 29.0 6.4 39 321-359 30-68 (160)
247 cd01460 vWA_midasin VWA_Midasi 49.4 2.5E+02 0.0054 27.0 11.6 82 194-276 166-257 (266)
248 PRK07449 2-succinyl-5-enolpyru 46.9 67 0.0015 33.8 7.7 47 177-229 61-107 (568)
249 TIGR02176 pyruv_ox_red pyruvat 44.1 1.7E+02 0.0036 34.2 10.7 85 209-297 89-175 (1165)
250 PRK13683 hypothetical protein; 42.7 38 0.00082 26.9 3.7 33 260-295 21-53 (87)
251 cd05710 SIS_1 A subgroup of th 38.3 71 0.0015 26.2 5.1 40 190-231 46-85 (120)
252 PF06707 DUF1194: Protein of u 37.8 2.9E+02 0.0063 25.5 9.4 78 191-274 115-197 (205)
253 PF01738 DLH: Dienelactone hyd 37.4 2.2E+02 0.0048 25.4 8.6 95 169-302 100-194 (218)
254 PF05014 Nuc_deoxyrib_tr: Nucl 37.3 64 0.0014 26.2 4.6 39 193-232 63-101 (113)
255 PRK10886 DnaA initiator-associ 36.9 1.3E+02 0.0028 27.5 6.9 41 189-231 107-147 (196)
256 KOG0369 Pyruvate carboxylase [ 36.3 80 0.0017 34.5 6.0 76 193-292 159-237 (1176)
257 cd05017 SIS_PGI_PMI_1 The memb 36.1 73 0.0016 26.0 4.8 38 190-229 42-79 (119)
258 PF10415 FumaraseC_C: Fumarase 34.4 45 0.00097 24.1 2.8 19 324-342 28-46 (55)
259 cd05014 SIS_Kpsf KpsF-like pro 34.4 90 0.0019 25.4 5.1 40 190-231 46-85 (128)
260 cd05008 SIS_GlmS_GlmD_1 SIS (S 33.3 96 0.0021 25.1 5.1 39 190-230 45-83 (126)
261 COG1303 Uncharacterized protei 32.8 90 0.002 27.8 4.9 41 246-289 24-65 (179)
262 TIGR00441 gmhA phosphoheptose 32.4 83 0.0018 27.1 4.7 40 190-231 78-117 (154)
263 PF08312 cwf21: cwf21 domain; 31.1 1.3E+02 0.0028 21.0 4.6 31 322-353 14-44 (46)
264 PRK13936 phosphoheptose isomer 31.1 93 0.002 28.1 5.0 41 189-231 109-149 (197)
265 PF06945 DUF1289: Protein of u 31.0 70 0.0015 22.6 3.3 16 304-320 20-35 (51)
266 PRK00414 gmhA phosphoheptose i 30.7 99 0.0022 27.9 5.1 41 189-231 109-149 (192)
267 COG0233 Frr Ribosome recycling 30.6 1.3E+02 0.0027 27.6 5.6 39 318-357 135-173 (187)
268 COG0777 AccD Acetyl-CoA carbox 30.6 1.2E+02 0.0025 29.6 5.6 62 171-233 133-208 (294)
269 PRK13938 phosphoheptose isomer 30.4 1.4E+02 0.003 27.2 6.0 42 188-231 110-151 (196)
270 cd05007 SIS_Etherase N-acetylm 30.2 92 0.002 29.5 5.0 40 190-231 117-156 (257)
271 cd05009 SIS_GlmS_GlmD_2 SIS (S 29.8 1.4E+02 0.003 24.9 5.6 39 191-230 61-99 (153)
272 cd08323 CARD_APAF1 Caspase act 29.7 60 0.0013 25.7 3.0 26 321-346 16-41 (86)
273 TIGR03142 cytochro_ccmI cytoch 27.5 1E+02 0.0022 25.6 4.2 36 320-356 44-79 (117)
274 cd08326 CARD_CASP9 Caspase act 27.2 69 0.0015 25.2 3.0 23 322-344 19-41 (84)
275 PF07295 DUF1451: Protein of u 26.8 1.5E+02 0.0033 25.9 5.3 40 319-358 18-57 (146)
276 COG5381 Uncharacterized protei 26.6 1.7E+02 0.0036 25.9 5.4 62 269-332 70-135 (184)
277 cd08325 CARD_CASP1-like Caspas 25.7 1.1E+02 0.0023 23.9 3.8 36 318-353 15-50 (83)
278 PF10815 ComZ: ComZ; InterPro 25.7 2.7E+02 0.0058 20.3 5.7 41 321-361 14-55 (56)
279 PF10925 DUF2680: Protein of u 25.6 1.7E+02 0.0038 21.4 4.7 28 326-353 25-52 (59)
280 PRK06702 O-acetylhomoserine am 25.5 1.1E+02 0.0024 31.4 4.9 45 73-120 62-106 (432)
281 TIGR01204 bioW 6-carboxyhexano 25.5 2.6E+02 0.0057 26.4 6.9 72 208-287 150-232 (232)
282 PF02639 DUF188: Uncharacteriz 25.3 47 0.001 28.4 1.8 23 211-233 1-23 (130)
283 cd01452 VWA_26S_proteasome_sub 25.0 2E+02 0.0044 26.1 6.0 34 194-227 109-143 (187)
284 cd08327 CARD_RAIDD Caspase act 25.0 74 0.0016 25.6 2.8 23 323-345 25-47 (94)
285 PF12010 DUF3502: Domain of un 24.1 1.1E+02 0.0025 25.9 4.0 27 321-353 103-129 (134)
286 TIGR03127 RuMP_HxlB 6-phospho 23.5 1.6E+02 0.0036 25.6 5.1 40 190-231 71-110 (179)
287 TIGR00496 frr ribosome recycli 23.3 2E+02 0.0044 25.8 5.6 40 318-358 124-163 (176)
288 PLN02522 ATP citrate (pro-S)-l 23.3 4.4E+02 0.0096 28.5 9.0 86 190-280 220-319 (608)
289 COG3960 Glyoxylate carboligase 23.3 2E+02 0.0042 29.0 5.8 29 262-290 134-164 (592)
290 PRK13762 tRNA-modifying enzyme 23.2 5.3E+02 0.011 25.3 9.0 36 193-230 132-167 (322)
291 PF02211 NHase_beta: Nitrile h 22.9 1.2E+02 0.0026 28.4 4.2 28 310-343 68-95 (222)
292 COG2515 Acd 1-aminocyclopropan 22.8 3.1E+02 0.0067 27.1 7.0 107 193-315 64-175 (323)
293 COG0498 ThrC Threonine synthas 22.7 2.3E+02 0.0049 29.1 6.5 20 213-232 142-161 (411)
294 cd08332 CARD_CASP2 Caspase act 22.4 1E+02 0.0022 24.5 3.1 24 322-345 23-46 (90)
295 PF07485 DUF1529: Domain of Un 22.1 2E+02 0.0043 24.4 5.0 115 138-276 4-121 (123)
296 cd05312 NAD_bind_1_malic_enz N 21.5 2.5E+02 0.0054 27.3 6.2 60 173-232 3-70 (279)
297 PRK15482 transcriptional regul 21.4 2.8E+02 0.0061 26.2 6.6 40 190-231 181-220 (285)
298 PRK11658 UDP-4-amino-4-deoxy-L 21.4 5.4E+02 0.012 25.4 8.9 60 57-119 10-78 (379)
299 COG0132 BioD Dethiobiotin synt 21.3 2.3E+02 0.005 26.5 5.8 92 192-288 106-201 (223)
300 PRK00083 frr ribosome recyclin 21.3 2.5E+02 0.0054 25.4 5.8 40 318-358 133-172 (185)
301 PF10642 Tom5: Mitochondrial i 21.3 1.9E+02 0.0041 20.6 3.9 25 333-357 8-32 (49)
302 PRK00124 hypothetical protein; 21.2 1.7E+02 0.0037 25.8 4.5 35 196-233 3-37 (151)
303 cd08330 CARD_ASC_NALP1 Caspase 21.0 1.1E+02 0.0024 23.8 3.1 27 320-346 16-42 (82)
304 TIGR02803 ExbD_1 TonB system t 20.9 4E+02 0.0086 21.9 6.7 49 181-229 73-121 (122)
305 COG0769 MurE UDP-N-acetylmuram 20.9 9.6E+02 0.021 25.0 11.9 148 127-297 301-450 (475)
306 PRK01322 6-carboxyhexanoate--C 20.7 4.3E+02 0.0094 25.1 7.4 74 208-289 157-241 (242)
307 PF07615 Ykof: YKOF-related Fa 20.6 3.2E+02 0.0069 21.2 5.6 34 258-292 42-76 (81)
308 PRK13937 phosphoheptose isomer 20.5 2E+02 0.0043 25.7 5.1 40 189-230 104-143 (188)
309 PRK05772 translation initiatio 20.1 5.1E+02 0.011 26.1 8.3 130 167-314 174-314 (363)
310 PF00140 Sigma70_r1_2: Sigma-7 20.1 1.7E+02 0.0037 19.1 3.4 34 319-352 2-35 (37)
311 COG0848 ExbD Biopolymer transp 20.0 4.4E+02 0.0096 22.6 6.9 46 183-228 87-132 (137)
No 1
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.5e-103 Score=739.59 Aligned_cols=344 Identities=64% Similarity=1.059 Sum_probs=326.1
Q ss_pred cccccccccccCCCCCC--CCcceeeeCCCCcccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 018037 16 ILKPLTNSFLLHRPIST--DTTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92 (362)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~g 92 (362)
++.|+..+..+++...+ ..++++++++ ||+.|++|+ |++...+|+|+++++|++|+++|+||.++++||++++|+|
T Consensus 11 ~l~~~~~~~~s~~~~~~r~~~~~~~~~~~-~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRG 89 (394)
T KOG0225|consen 11 LLRPLAQAPPSRTLVNTRLVPSDVTFESS-PFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRG 89 (394)
T ss_pred hhchhhhcCccchhhccccCccccccccc-ceeEEEccCCCCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhce
Confidence 55555544322222222 4566777766 999999998 9999999999999999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccc
Q 018037 93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172 (362)
Q Consensus 93 f~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~l 172 (362)
|||+|+||||++||+.++|++.|.||++||||++.+.+|.++.++|+||+|+.+|+++|+|||||++.+ +|||++|||
T Consensus 90 FCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIV 167 (394)
T KOG0225|consen 90 FCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIV 167 (394)
T ss_pred eeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--cccCcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 599999999
Q ss_pred cchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhcC
Q 018037 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252 (362)
Q Consensus 173 G~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~ 252 (362)
|+|+|+++|+|||.||++.+.++++++|||++||||++|++|||++|+||+||||+||+|||+|+.++.+..|+|++||.
T Consensus 168 GAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~ 247 (394)
T KOG0225|consen 168 GAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGD 247 (394)
T ss_pred ccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHc
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH 331 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~ 331 (362)
.|||++|||+|+++|++|.++|++|+++ +||+++|+.|||++|||++||+++||++||+++.|++||||..++++|++.
T Consensus 248 yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~ 327 (394)
T KOG0225|consen 248 YIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIEL 327 (394)
T ss_pred CCCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHh
Confidence 7999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 332 DLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 332 g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
+++|++||++|+++++++||+++++|+++|+
T Consensus 328 ~late~ELKai~k~irkeVdeav~~A~~~p~ 358 (394)
T KOG0225|consen 328 GLATEEELKAIDKEIRKEVDEAVAFATASPE 358 (394)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999986
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-89 Score=667.53 Aligned_cols=306 Identities=43% Similarity=0.724 Sum_probs=294.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCC-CEEEcCchhHHHHHHcCCC
Q 018037 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGT 133 (362)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~-D~v~~~yR~h~~~l~rG~~ 133 (362)
....+++++|+++|++|+++|+||+++.+|+++|+|.||||++.||||++||+..+|+++ ||++++||+|+++|++|+|
T Consensus 20 ~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~ 99 (358)
T COG1071 20 PNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVP 99 (358)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCC
Confidence 445799999999999999999999999999999999999999999999999999999966 9999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCC-eEEEEeCCcccccchHHHH
Q 018037 134 LLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDET-VTFALYGDGAANQGQLFEA 212 (362)
Q Consensus 134 ~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~-vvv~~~GDGa~~~G~~~Ea 212 (362)
+.++|++++|+.+|+|+|||||||+++++.|+++.+++||+|+|+|+|+|+|.||++.+. |++|++|||+++||+|||+
T Consensus 100 ~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEa 179 (358)
T COG1071 100 LKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEA 179 (358)
T ss_pred HHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999555 9999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 213 ln~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
||||++|+|||||||+||+|+||++...++..+.++.|+ ||+|+++|||||+.+|++++++|++++|+ +||+|||+.
T Consensus 180 lN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 180 LNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred HHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 999999999999999999999998888777666677665 99999999999999999999999999999 899999999
Q ss_pred EecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018037 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGR 361 (362)
Q Consensus 290 tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p 361 (362)
|||+.|||++||+++||+++|+++|+ .+|||.++|++|++.|+||++++++|+++++++|++|+++|+++|
T Consensus 260 tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p 330 (358)
T COG1071 260 TYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASP 330 (358)
T ss_pred EeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999988999999999998 599999999999999999999999999999999999999999997
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=3.9e-84 Score=637.51 Aligned_cols=310 Identities=86% Similarity=1.388 Sum_probs=300.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCC
Q 018037 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (362)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~ 132 (362)
|.....+|+++|+++||+|+++|.||+++.+++++|+|.||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 21 ~~~~~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~ 100 (362)
T PLN02269 21 PSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGG 100 (362)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCC
Confidence 43345889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHH
Q 018037 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212 (362)
Q Consensus 133 ~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ea 212 (362)
++..+|+|++|+.+|+|+|||||||+++++.||++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+
T Consensus 101 ~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ea 180 (362)
T PLN02269 101 TVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEA 180 (362)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 213 ln~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
||+|+.|+||+||||+||+|+++|+..++...++|+.+++++|+++|||+|+++|+++++.|++++|++||+|||+.|||
T Consensus 181 ln~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR 260 (362)
T PLN02269 181 LNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYR 260 (362)
T ss_pred HHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 99999999999999999999999998888888899999999999999999999999999999999988889999999999
Q ss_pred CCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 293 ~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
++|||++||+.+||+++|+++|++++|||.+|+++|+++|+||++++++|+++++++|++++++|+++|.
T Consensus 261 ~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~ 330 (362)
T PLN02269 261 YHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPM 330 (362)
T ss_pred CCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999998789999999999866999999999999999999999999999999999999999999884
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=1e-79 Score=603.49 Aligned_cols=308 Identities=38% Similarity=0.693 Sum_probs=295.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCC
Q 018037 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (362)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~ 132 (362)
+.+...+|+|+++++|++|+++|.||+++.+++++|+|.||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~ 90 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGV 90 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCC
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCC-------CCCeEEEEeCCcccc
Q 018037 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (362)
Q Consensus 133 ~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~-------~~~vvv~~~GDGa~~ 205 (362)
++.++|+|++|+++|+++|||||||+++++.++++.+|+||+++|+|+|+|+|.|+++ ++++|||++|||+++
T Consensus 91 ~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 170 (341)
T CHL00149 91 PPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN 170 (341)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh
Confidence 9999999999999999999999999999999999999999999999999999999887 589999999999999
Q ss_pred cchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CC
Q 018037 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (362)
Q Consensus 206 ~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~g 282 (362)
+|++||+||+|++|+||+||||+||+|+++++...++..++|++++ ||+++++|||+|+++|+++++.|++++|+ ++
T Consensus 171 ~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~g 250 (341)
T CHL00149 171 NGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDG 250 (341)
T ss_pred hcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999877776678898865 99999999999999999999999999999 99
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 283 P~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
|+|||+.|||+.|||++|++ .||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|+
T Consensus 251 P~lIev~tyR~~gHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~ 328 (341)
T CHL00149 251 PTLIEALTYRFRGHSLADPD-ELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPE 328 (341)
T ss_pred CEEEEEEEecCCCcCCCCCc-cCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999987 699999999998 6999999999999999999999999999999999999999999985
No 5
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=7e-78 Score=603.99 Aligned_cols=308 Identities=41% Similarity=0.730 Sum_probs=295.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCC
Q 018037 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (362)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~ 132 (362)
|...+.+++|+++++|++|+++|.||+++.++|++|++.||+|++.||||++||++++|+++||++++||+|+++|++|+
T Consensus 77 ~~~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~ 156 (433)
T PLN02374 77 SASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGV 156 (433)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCC-------CCCeEEEEeCCcccc
Q 018037 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (362)
Q Consensus 133 ~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~-------~~~vvv~~~GDGa~~ 205 (362)
++.++|+|++|+++|+++|+|||||+++++.|+++.+++||+++|+|+|+|+|.|+++ +++++||++|||+++
T Consensus 157 ~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 236 (433)
T PLN02374 157 PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCN 236 (433)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999999999999999999999999999875 488999999999999
Q ss_pred cchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CC
Q 018037 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (362)
Q Consensus 206 ~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~g 282 (362)
+|+|||+||+|++|+||+||||+||+|+++++...++..+++++++ ||+++++|||+|+++|++++++|++++|+ ++
T Consensus 237 eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~g 316 (433)
T PLN02374 237 NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEG 316 (433)
T ss_pred cChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999888777778888864 99999999999999999999999999999 99
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 283 P~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
|+|||+.|||+.|||++|++ .||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.
T Consensus 317 P~LIe~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~ 394 (433)
T PLN02374 317 PTLVECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPL 394 (433)
T ss_pred CEEEEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999987 699999999998 6999999999999999999999999999999999999999999874
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=5.6e-78 Score=586.09 Aligned_cols=300 Identities=52% Similarity=0.911 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHHHHHHH
Q 018037 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSE 140 (362)
Q Consensus 61 ~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~~~lae 140 (362)
+|+|+++||+|+++|.||+++.+++++|++.||+|++.||||++||++.+|+++||++++||+|+++|++|+++.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCC
Q 018037 141 LMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD 220 (362)
Q Consensus 141 l~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~ 220 (362)
++|+++|+|+|||||||+++++.|+++.+|+||+++|+|+|+|+|.|++++++++||++|||++++|.+||+||+|++|+
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 018037 221 LPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (362)
Q Consensus 221 LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs 297 (362)
||+||||+||+|+++++...+...++|++++ ||+|+++|||+|+++|++++++|++++|+ ++|+|||+.|||++|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 9999999999999999887777778898864 99999999999999999999999999999 89999999999999999
Q ss_pred CCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 298 MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 298 ~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++++|++.|.
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~ 303 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPE 303 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99987 699999999998 6999999999999999999999999999999999999999999884
No 7
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=7.9e-75 Score=559.05 Aligned_cols=290 Identities=45% Similarity=0.758 Sum_probs=280.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCC
Q 018037 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKD 146 (362)
Q Consensus 67 ~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~ 146 (362)
+||+|+++|.||+++.+++++|++.||+|++.||||++||++.+|+++|+++++||+|+++|++|+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEE
Q 018037 147 GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226 (362)
Q Consensus 147 g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfV 226 (362)
|+++|+|||||+++++.++++.+|+||+++|+|+|+|+|.|+.++++++||++|||++++|.++|+||+|+.|+||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCC
Q 018037 227 CENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGS 303 (362)
Q Consensus 227 v~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~ 303 (362)
|+||+|+++++.......++|..++ ||+++++|||+|+++|++++++|++++|+ ++|+|||+.|||++|||++|+++
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 9999999999887766678888854 99999999999999999999999999999 99999999999999999998888
Q ss_pred CCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018037 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKA 357 (362)
Q Consensus 304 ~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A 357 (362)
.||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999997 69999999999999999999999999999999999999875
No 8
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=1.1e-74 Score=559.45 Aligned_cols=292 Identities=39% Similarity=0.642 Sum_probs=264.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCC
Q 018037 70 QMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCS 149 (362)
Q Consensus 70 ~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~ 149 (362)
+|+++|+||+.+..++..+++.||+|++.||||+++|+..+|+++|+|+++||+|+++|++|+++.++|+|++|+..+.+
T Consensus 2 ~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~ 81 (300)
T PF00676_consen 2 RMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHG 81 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTT
T ss_pred chHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCC
Confidence 46677777777777777777889999999999999999999999999999999999999999999999999999996555
Q ss_pred CCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEc
Q 018037 150 HGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (362)
Q Consensus 150 ~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~N 229 (362)
+|+. ++|+..++.++++.++++|.++|+|+|.|+|.|+++.+.++||++|||+++||.|||+||+|++|+|||||||+|
T Consensus 82 g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveN 160 (300)
T PF00676_consen 82 GGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVEN 160 (300)
T ss_dssp TTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred CCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEec
Confidence 5554 556667878899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCC
Q 018037 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (362)
Q Consensus 230 N~~gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR 306 (362)
|+|+|+|+..+++..++++.+ +||+|+++|||+|+++|++++++|++++|+ +||+|||+.|||++|||++|+++.||
T Consensus 161 N~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr 240 (300)
T PF00676_consen 161 NQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYR 240 (300)
T ss_dssp ESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTS
T ss_pred CCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccC
Confidence 999999999998888888775 599999999999999999999999999999 99999999999999999999989999
Q ss_pred ChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
+++|++.|++.+|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.
T Consensus 241 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~ 296 (300)
T PF00676_consen 241 SPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPE 296 (300)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHB
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999998877899999999999999999999999999999999999999999874
No 9
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=3.1e-72 Score=551.10 Aligned_cols=296 Identities=30% Similarity=0.493 Sum_probs=281.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHH
Q 018037 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLL 135 (362)
Q Consensus 56 ~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~ 135 (362)
.+.+|+++++++||+|+++|.||+++.++|++|+| ||+|++.||||++||++.+|+++|+++++||+|+++|++|+++.
T Consensus 18 ~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~ 96 (341)
T TIGR03181 18 APDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLV 96 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHH
Confidence 35689999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHH
Q 018037 136 EVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215 (362)
Q Consensus 136 ~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~ 215 (362)
.+|+|++|+.+|.+ +.++.|+++.+++||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+
T Consensus 97 ~~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~t 167 (341)
T TIGR03181 97 EILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNF 167 (341)
T ss_pred HHHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHH
Confidence 99999999887632 246679999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 216 A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
|++|+||+||||+||+|+++++.......++|.+++ ||+++++|||+|+.+|+++++.|++++++ ++|+|||+.|||
T Consensus 168 A~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R 247 (341)
T TIGR03181 168 AGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYR 247 (341)
T ss_pred HhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 999999999999999999998877666678898764 99999999999999999999999999999 999999999999
Q ss_pred CCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018037 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGRQ 362 (362)
Q Consensus 293 ~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p~ 362 (362)
+.|||++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|+
T Consensus 248 ~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~ 316 (341)
T TIGR03181 248 LGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPP 316 (341)
T ss_pred CCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999888899999999998 6999999999999999999999999999999999999999999985
No 10
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.9e-64 Score=469.40 Aligned_cols=309 Identities=30% Similarity=0.458 Sum_probs=295.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcC
Q 018037 52 APSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRG 131 (362)
Q Consensus 52 ~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG 131 (362)
.+++.+.+++|..++||++|+++..||.-+-+-.+||+| .|+..+.|+||+-+|.+++|.|.|.|++.||.-|+.|.||
T Consensus 76 ~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRg 154 (432)
T KOG1182|consen 76 DKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRG 154 (432)
T ss_pred CcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcC
Confidence 477889999999999999999999999998888899998 6999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCC-CeEEEEeCCcccccchHH
Q 018037 132 GTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE-TVTFALYGDGAANQGQLF 210 (362)
Q Consensus 132 ~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~-~vvv~~~GDGa~~~G~~~ 210 (362)
.++++++.+.+|+..+..+||+|++|+++++.||+..++++..|+|.|+|+|+|.|+.+++ +++||++|||++++|++|
T Consensus 155 ftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~H 234 (432)
T KOG1182|consen 155 FTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAH 234 (432)
T ss_pred ccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchh
Confidence 9999999999999999999999999999999999999999999999999999999977655 899999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEE
Q 018037 211 EALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILE 287 (362)
Q Consensus 211 Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe 287 (362)
.+||+|+....|+||+|-||+|+|+||.+.+..+..++.+| ||+..|+|||||+++||.|+++|.+.+-. +.|+|||
T Consensus 235 A~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliE 314 (432)
T KOG1182|consen 235 AAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIE 314 (432)
T ss_pred hhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhh
Confidence 99999999999999999999999999999888777777765 99999999999999999999999999988 8999999
Q ss_pred EEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018037 288 MDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGR 361 (362)
Q Consensus 288 ~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p 361 (362)
+.|||..+||+|||.+.||+.+|++.|.+.+.||.+||+++.++|+|+|+.-.++.++++++|-++++.|++-+
T Consensus 315 amtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~ 388 (432)
T KOG1182|consen 315 AMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKE 388 (432)
T ss_pred hhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998643
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=4e-62 Score=523.80 Aligned_cols=316 Identities=20% Similarity=0.259 Sum_probs=282.2
Q ss_pred CCcceeeeCC-------CCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHH
Q 018037 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (362)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~v 105 (362)
.|.++.+|.. .-|...++|.+.. .+|+++++++|+.|+++|.||+++..+|..+++. ++.|||++.+
T Consensus 155 Ycg~ig~E~~hi~~~~er~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf----~~eG~Ea~i~ 228 (924)
T PRK09404 155 YCGSIGVEYMHISDPEERRWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF----SLEGGESLIP 228 (924)
T ss_pred hcccHhheeccCCCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc----cccchhhHHH
Confidence 4566655541 1599999996544 9999999999999999999999999999988875 4799999999
Q ss_pred HHHh------cCCCCCEEEc-CchhHHHHHHc--CCCHHHHHHHHhCCC-------CCCCC----------CCCCccCCc
Q 018037 106 GMEA------GITKKDSIIT-AYRDHCTFLGR--GGTLLEVFSELMGRK-------DGCSH----------GKGGSMHFY 159 (362)
Q Consensus 106 g~~~------~l~~~D~v~~-~yR~h~~~l~r--G~~~~~~lael~g~~-------~g~~~----------Grggs~H~~ 159 (362)
|+.. +++++|+|++ +||||+++|++ |+|+.++|+|++|+. +|.++ |+||+||+.
T Consensus 229 gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~ 308 (924)
T PRK09404 229 MLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLS 308 (924)
T ss_pred HHHHHHHHHHhCCCCCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEee
Confidence 9988 6668999999 69999999994 999999999999997 44444 666677765
Q ss_pred cCCCCcccCCccccchhHHHHHHHHHHhhCCCC------CeEEEEeCCccc-ccchHHHHHHHHHhCCCC---eEEEEEc
Q 018037 160 KKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE------TVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCEN 229 (362)
Q Consensus 160 ~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~------~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LP---vIfVv~N 229 (362)
.. .+.+++|.+.|+|+|.|+|.|+++.+ .++|+++||||+ +||.|||+||+|++|+|| +||||+|
T Consensus 309 l~-----~npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveN 383 (924)
T PRK09404 309 LA-----FNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVIN 383 (924)
T ss_pred cc-----CCccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEe
Confidence 43 25699999999999999999998877 799999999997 899999999999999998 9999999
Q ss_pred CCcccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCC
Q 018037 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (362)
Q Consensus 230 N~~gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR 306 (362)
|+||++|+...+.+.+....+ +||+|+++|||+|+++|+++++.|++++|+ +||+|||+.|||++|||++|++ .||
T Consensus 384 Nq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p-~yr 462 (924)
T PRK09404 384 NQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEP-SFT 462 (924)
T ss_pred CCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCC-cCC
Confidence 999999998877655555554 599999999999999999999999999999 9999999999999999999998 499
Q ss_pred ChhhHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018037 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEG 360 (362)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~ 360 (362)
+|+|++.|++.+||+.+|+++|+++|++|++|+++|+++++++|++|+++|++.
T Consensus 463 ~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~ 516 (924)
T PRK09404 463 QPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEW 516 (924)
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998778999999999999999999999999999999999999999864
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=3.8e-55 Score=468.32 Aligned_cols=323 Identities=19% Similarity=0.230 Sum_probs=283.9
Q ss_pred CCcceeeeCC-------CCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHH
Q 018037 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (362)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~v 105 (362)
.|.++-+|.- .-|.+.++|.+. ...+|+++.+++++.|+.+-.||.++...|...|-.| -.|-|+...
T Consensus 154 YCg~ig~E~~hi~~~~~r~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFs----lEG~eslip 228 (929)
T TIGR00239 154 YCGSIGAEYMHITSTEEKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFS----LEGLDALVP 228 (929)
T ss_pred hcCcceeeeecCCCHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceee----cccHHHHHH
Confidence 4566655542 149999999765 7899999999999999999999999999887654322 579998877
Q ss_pred HHHhcCC------CCCEEEcC-chhHHHHHH--cCCCHHHHHHHHhCCCCC-CCCCCCCc-cCCcc-----------CCC
Q 018037 106 GMEAGIT------KKDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKDG-CSHGKGGS-MHFYK-----------KDS 163 (362)
Q Consensus 106 g~~~~l~------~~D~v~~~-yR~h~~~l~--rG~~~~~~lael~g~~~g-~~~Grggs-~H~~~-----------~~~ 163 (362)
++...++ .+|+|+++ ||||...|+ +|+|+..+|+|+.|+..+ .+.|+|++ +|++. .+.
T Consensus 229 ~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~ 308 (929)
T TIGR00239 229 MLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHL 308 (929)
T ss_pred HHHHHHHHHHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCccee
Confidence 7655543 68999997 999999999 999999999999998776 45689998 99984 345
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC------CCeEEEEeCCccc-ccchHHHHHHHHHhCCCCe---EEEEEcCCcc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD------ETVTFALYGDGAA-NQGQLFEALNIAALWDLPA---ILVCENNHYG 233 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~------~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPv---IfVv~NN~~g 233 (362)
++.+++|+++.+.|+|+|.|+|.|+++. +.++||++||||+ +||.|||+||+|++|+||+ ||||+||+||
T Consensus 309 ~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg 388 (929)
T TIGR00239 309 ALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIG 388 (929)
T ss_pred eecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE
Confidence 6789999999999999999999998765 5799999999995 8999999999999999997 9999999999
Q ss_pred cccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhh
Q 018037 234 MGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDE 310 (362)
Q Consensus 234 i~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e 310 (362)
++|+...+.+.+....+ +||+|+++|||+|+++|+.+++.|++++|+ +||+|||+.|||++|||++|++..||+ +|
T Consensus 389 ~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~ 467 (929)
T TIGR00239 389 FTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LM 467 (929)
T ss_pred EEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HH
Confidence 99987766655555544 599999999999999999999999999999 999999999999999999999977886 88
Q ss_pred HHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018037 311 ISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKEGR 361 (362)
Q Consensus 311 ~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~p 361 (362)
++.|++.+||+.+|+++|+++|++|++++++|+++++++|++|++.++..|
T Consensus 468 ~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~ 518 (929)
T TIGR00239 468 YQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWR 518 (929)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999986789999999999999999999999999999999999999987654
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=8.5e-51 Score=383.51 Aligned_cols=230 Identities=22% Similarity=0.283 Sum_probs=205.6
Q ss_pred HHHHHHHHHhccccccccccCcchHHHHHHHHhcCCC------CCEEEcC-chhHHHHHH--cCCCHHHHHHHHhCCCC-
Q 018037 77 MEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITK------KDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKD- 146 (362)
Q Consensus 77 ~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~------~D~v~~~-yR~h~~~l~--rG~~~~~~lael~g~~~- 146 (362)
||+.+...|...+- + ...|+|++.+++...|++ +|+++++ ||+|...|+ +|+|+.++|+|++|+.+
T Consensus 1 ~e~f~~~~f~~~kr---f-s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKR---F-GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeE---E-EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 57777776665332 2 289999999999999987 7999998 999999999 99999999999999887
Q ss_pred --CCCCCCCCccCCccCC-----------CCcccCCccccchhHHHHHHHHHHhhCC-----CCCeEEEEeCCccc-ccc
Q 018037 147 --GCSHGKGGSMHFYKKD-----------SGFYGGHGIVGAQIPLGCGLAFAQKYSK-----DETVTFALYGDGAA-NQG 207 (362)
Q Consensus 147 --g~~~Grggs~H~~~~~-----------~~~~~~~g~lG~~~p~A~G~A~A~k~~~-----~~~vvv~~~GDGa~-~~G 207 (362)
+.+.|++.++|++.+. .++.+++|+||.++|+|+|+|+|.|+++ .+.++|+++||||+ +||
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG 156 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQG 156 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCC
Confidence 5566777899998664 4578999999999999999999999998 47899999999995 799
Q ss_pred hHHHHHHHHHhCCCC---eEEEEEcCCcccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-C
Q 018037 208 QLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-N 281 (362)
Q Consensus 208 ~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~ 281 (362)
.|||+||+|++|+|| +||||+||+||++|+.+++++.+..+++ +||+|+++|||+|+++|++++++|++++|+ +
T Consensus 157 ~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~ 236 (265)
T cd02016 157 VVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFK 236 (265)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999 9999999999999999888777666665 499999999999999999999999999999 9
Q ss_pred CCEEEEEEEecCCCCCCCCCCCCCCChhhH
Q 018037 282 GPMILEMDTYRYHGHSMSDPGSTYRTRDEI 311 (362)
Q Consensus 282 gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~ 311 (362)
||+|||++|||++|||++|++ .||+|.+|
T Consensus 237 gp~lIe~~tYR~~GHse~D~p-~~t~p~my 265 (265)
T cd02016 237 KDVVIDLVCYRRHGHNELDEP-SFTQPLMY 265 (265)
T ss_pred CCEEEEEEEecCCCCCCcCCc-cccCCCcC
Confidence 999999999999999999998 59988753
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=1.8e-36 Score=318.27 Aligned_cols=309 Identities=20% Similarity=0.276 Sum_probs=259.1
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC------CCCEE
Q 018037 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~------~~D~v 117 (362)
.|.+.++|.| ...+|+++.+.+++++-..-.||.++...|-..|- | +-.|-|.+..-+...|. -+.++
T Consensus 477 ~W~Q~rvE~~--~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkR--F--slEG~Es~iplld~~~~~aa~~~l~evv 550 (1228)
T PRK12270 477 RWLQERVERP--HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKR--F--SLEGGESLIPLLDAVLDQAAEHGLDEVV 550 (1228)
T ss_pred HHHHHHhhCC--CCCCCHHHHHHHHHHhhhHHHHHHHHhhhccccee--e--eecchhhHHHHHHHHHHHHHhcCCceEE
Confidence 5999999965 67789999999999999999999998887764432 1 24577766544444443 34577
Q ss_pred Ec-CchhHHHHHHc--CCCHHHHHHHHhCCCC-CCCCCCCCc-cCCccCC-----------CCcccCCccccchhHHHHH
Q 018037 118 IT-AYRDHCTFLGR--GGTLLEVFSELMGRKD-GCSHGKGGS-MHFYKKD-----------SGFYGGHGIVGAQIPLGCG 181 (362)
Q Consensus 118 ~~-~yR~h~~~l~r--G~~~~~~lael~g~~~-g~~~Grggs-~H~~~~~-----------~~~~~~~g~lG~~~p~A~G 181 (362)
|+ .|||+-..|+. |.+..++|.|+-|+-. +...|.|.. +|++... ..+..+.++|.+.-|+.-|
T Consensus 551 igm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleG 630 (1228)
T PRK12270 551 IGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEG 630 (1228)
T ss_pred ecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhh
Confidence 88 79999999986 9999999999999865 455677765 8886421 1234788999999999999
Q ss_pred HHHHHhhCC---C---CCeEEEEeCCcc-cccchHHHHHHHHHhCCCC---eEEEEEcCCcccccccccccCC---chHh
Q 018037 182 LAFAQKYSK---D---ETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKS---PSYY 248 (362)
Q Consensus 182 ~A~A~k~~~---~---~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t~~~~~~~~---~~~~ 248 (362)
++.|.|..- . ..+.|+++||++ .+||.++|+||+|.+|++| +||||.||++|++|+.....++ +|++
T Consensus 631 ivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~a 710 (1228)
T PRK12270 631 IVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVA 710 (1228)
T ss_pred hhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHH
Confidence 999987431 2 347899999999 7899999999999999999 8999999999999987754433 3443
Q ss_pred hhcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHH
Q 018037 249 KRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327 (362)
Q Consensus 249 ~~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~ 327 (362)
+++++|+++|||+||++|..+++.|++|+++ ++|++||+.|||++||+++|+|+ |++|.+|+.+.+.+..-+.|++.
T Consensus 711 -k~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~ 788 (1228)
T PRK12270 711 -KMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEA 788 (1228)
T ss_pred -hhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHH
Confidence 4799999999999999999999999999999 99999999999999999999985 99999999887555556899999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018037 328 ILAHDLATEKELKDIEKEVRKEVDDAIAKAKEG 360 (362)
Q Consensus 328 L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~ 360 (362)
|+.+|.+|++|++++.++.+.++++++...++.
T Consensus 789 Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~ 821 (1228)
T PRK12270 789 LIGRGDITVEEAEQALRDYQGQLERVFNEVREA 821 (1228)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999888753
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=7e-35 Score=304.45 Aligned_cols=229 Identities=21% Similarity=0.210 Sum_probs=191.0
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC---CCCEEE--cCch
Q 018037 48 HQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT---KKDSII--TAYR 122 (362)
Q Consensus 48 ~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~---~~D~v~--~~yR 122 (362)
.+++.|.+...|+.++|.++-. .+|.+ .++..+++.||+|++.|+ +.++++.++. |.|+++ ++||
T Consensus 4 ~~~~~p~d~~~l~~~~l~~l~~---~ir~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr 73 (581)
T PRK12315 4 EKINSPADLKKLSLDELEQLAS---EIRTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQ 73 (581)
T ss_pred hhcCCHHHHhhCCHHHHHHHHH---HHHHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCc
Confidence 3566688888899888887743 45554 344557788999999999 4444555555 899999 9999
Q ss_pred hHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCc
Q 018037 123 DHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (362)
Q Consensus 123 ~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDG 202 (362)
+|++.|++|.++..++.+++|+.+|++++++ |.|.. ...|++|+++|+|+|+|+|.|+++.+.++||++|||
T Consensus 74 ~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG 145 (581)
T PRK12315 74 SYPHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDG 145 (581)
T ss_pred hHHHHHHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECch
Confidence 9999999999999999999999999999887 44422 256899999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhCCCCeEEEEEcCCccccccccc---------ccCCchHhh--hcCCcceEEE-eCCCHHHHHHH
Q 018037 203 AANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR---------AAKSPSYYK--RGDYVPGLKV-DGMDALAVKQA 270 (362)
Q Consensus 203 a~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~---------~~~~~~~~~--~g~gi~g~~V-dG~D~~av~~a 270 (362)
++++|.+||+||+|+.|++|+||||+||+|+++++... .....+... .+||++++.| ||||+++++++
T Consensus 146 ~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a 225 (581)
T PRK12315 146 SLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEA 225 (581)
T ss_pred hhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHH
Confidence 99999999999999999999999999999999877641 112222222 4699999998 99999999999
Q ss_pred HHHHHHHhccCCCEEEEEEEecCCCCC
Q 018037 271 CKFAKEHALKNGPMILEMDTYRYHGHS 297 (362)
Q Consensus 271 ~~~A~~~ar~~gP~lIe~~tyR~~GHs 297 (362)
+++|.+. +||++|+++|||+.|..
T Consensus 226 ~~~a~~~---~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 226 FKEVKDI---DHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred HHHHHhC---CCCEEEEEEeecCCCCC
Confidence 9886542 89999999999999975
No 16
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.5e-29 Score=257.09 Aligned_cols=310 Identities=20% Similarity=0.297 Sum_probs=259.7
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC------CCCEE
Q 018037 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~------~~D~v 117 (362)
-|...++|.| +...+|.|+.+-+|..+.+.-+||+++...|..-+-.| -.|.|...-|+...++ .++.|
T Consensus 232 nWir~k~EtP-~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFG----LEGcE~lIP~mK~iiDrS~elGVe~iv 306 (1017)
T KOG0450|consen 232 NWIRQKFETP-GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFG----LEGCEVLIPAMKTIIDRSSELGVESIV 306 (1017)
T ss_pred HHHHHhccCC-CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccc----ccchhhhhhHHHHHhhhhhhcCchheE
Confidence 4888888966 78899999999999999999999999999888655444 4788888778766655 46888
Q ss_pred Ec-CchhHHHHHHc--CCCHHHHHHHHhCCCCCCCCCCCCc-cCCcc----CC--------CCcccCCccccchhHHHHH
Q 018037 118 IT-AYRDHCTFLGR--GGTLLEVFSELMGRKDGCSHGKGGS-MHFYK----KD--------SGFYGGHGIVGAQIPLGCG 181 (362)
Q Consensus 118 ~~-~yR~h~~~l~r--G~~~~~~lael~g~~~g~~~Grggs-~H~~~----~~--------~~~~~~~g~lG~~~p~A~G 181 (362)
++ .|||+-..|+. -.|+.++|.|+-|.+. .--|.|.. +|++. +. ..+..+.+++.+.-|+.+|
T Consensus 307 iGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~-~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~G 385 (1017)
T KOG0450|consen 307 IGMPHRGRLNVLANVVRKPLEQIFSEFSGLEA-ADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMG 385 (1017)
T ss_pred ecCCccchhHHHHHHHhhHHHHHHHhccCCCC-CcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeec
Confidence 88 69999998875 5699999999998433 22366665 77752 11 1246889999999999999
Q ss_pred HHHHHhhC-----CCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCC---eEEEEEcCCcccccccccccCC--chHhhh
Q 018037 182 LAFAQKYS-----KDETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKS--PSYYKR 250 (362)
Q Consensus 182 ~A~A~k~~-----~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t~~~~~~~~--~~~~~~ 250 (362)
-..|.++. +++...|.++||+| ++||.++|+|.+..+.++- .|+||.||+.|++|...-..++ +.-.++
T Consensus 386 KtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar 465 (1017)
T KOG0450|consen 386 KTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVAR 465 (1017)
T ss_pred hHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHH
Confidence 99998864 34568999999999 6899999999877665554 6999999999998865433322 222336
Q ss_pred cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHH
Q 018037 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLIL 329 (362)
Q Consensus 251 g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~ 329 (362)
..+.|.++||++|+++|.-+++-|.++... ++.++|++++||.+||++.|.| .|++|-+|+.+++.+..+..|.+.|+
T Consensus 466 ~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP-~FTQPlMYk~I~k~~~~l~~Y~ekLl 544 (1017)
T KOG0450|consen 466 VVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEP-MFTQPLMYKQIRKHKPVLQKYAEKLL 544 (1017)
T ss_pred HhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCc-cccchHHHHHHHcCCcHHHHHHHHHH
Confidence 789999999999999999999999999777 9999999999999999999988 49999999999988888999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018037 330 AHDLATEKELKDIEKEVRKEVDDAIAKAKEG 360 (362)
Q Consensus 330 ~~g~~t~~el~~i~~e~~~~v~~a~~~A~~~ 360 (362)
++|.+|+.|+++..+.+....++|++.++..
T Consensus 545 ~egtvs~~evd~~~~k~~~I~eeafe~sKd~ 575 (1017)
T KOG0450|consen 545 SEGTVSQQEVDEEIKKYDNILEEAFERSKDY 575 (1017)
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999764
No 17
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.96 E-value=1.7e-28 Score=258.41 Aligned_cols=317 Identities=19% Similarity=0.214 Sum_probs=260.9
Q ss_pred CCcceeeeCC-------CCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHH
Q 018037 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (362)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~v 105 (362)
.|.++-+|.. ..|.+.++|. ..+.++.|+.+.+++.+...--||..+...|...|-. .-.|-|+...
T Consensus 141 Ycgsig~E~~hi~~~~~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip 214 (906)
T COG0567 141 YCGSIGVEYMHISDPEEKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRF----SLEGGESLIP 214 (906)
T ss_pred hccceeeeeeccCCHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccc----cccchhhHHH
Confidence 4666655532 1599999997 7889999999999999999999999988877654332 2468888877
Q ss_pred HHHhcCC------CCCEEEc-CchhHHHHHH--cCCCHHHHHHHHhCCCCCCCCCCCCc-cCCccC-----C-----CCc
Q 018037 106 GMEAGIT------KKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGGS-MHFYKK-----D-----SGF 165 (362)
Q Consensus 106 g~~~~l~------~~D~v~~-~yR~h~~~l~--rG~~~~~~lael~g~~~g~~~Grggs-~H~~~~-----~-----~~~ 165 (362)
++...++ ..++|++ .|||+-..|. .|.|+..+|+|+.|.....- +.|+. +|++.. + ..+
T Consensus 215 ~l~~~i~~~~~~G~~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~-~sGDVKYH~G~~~~~~~~~~~v~l~L 293 (906)
T COG0567 215 MLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPD-LSGDVKYHLGFSSDRQTDGGKVHLSL 293 (906)
T ss_pred HHHHHHHHHHhcCcceEEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCC-cccccccccccccccccCCCeeEEEe
Confidence 7666554 4688999 7999999997 49999999999999654211 13443 666521 1 123
Q ss_pred ccCCccccchhHHHHHHHHHHhhCCC-----CCeEEEEeCCcc-cccchHHHHHHHHHhCCCC---eEEEEEcCCccccc
Q 018037 166 YGGHGIVGAQIPLGCGLAFAQKYSKD-----ETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGT 236 (362)
Q Consensus 166 ~~~~g~lG~~~p~A~G~A~A~k~~~~-----~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t 236 (362)
..+.++|....|+..|.+.|.+.... ..+.|.++||.+ .+||.+.|+||+...-+.. .|+||.||+.|++|
T Consensus 294 a~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTT 373 (906)
T COG0567 294 AFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTT 373 (906)
T ss_pred cCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCC
Confidence 47889999999999999999875432 246789999999 6899999999999888876 59999999999998
Q ss_pred ccccccCCchHhh---hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHH
Q 018037 237 AEWRAAKSPSYYK---RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312 (362)
Q Consensus 237 ~~~~~~~~~~~~~---~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~ 312 (362)
+.... .++.|++ +..+.|.++|+|.||++|..+.+-|++++.+ +++++|++.|||.+||+++|.+ .+++|..++
T Consensus 374 sp~~s-RSt~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DeP-s~TqP~mY~ 451 (906)
T COG0567 374 SPADA-RSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEP-SVTQPLMYQ 451 (906)
T ss_pred Ccccc-cCCCCCCChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccc-cccCHHHHH
Confidence 84332 2333443 4689999999999999999999999999888 9999999999999999999998 599999999
Q ss_pred hHhhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018037 313 GVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAK 358 (362)
Q Consensus 313 ~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~ 358 (362)
.+++...+...|.+.|+++|++++++.+.++++++..++..+...+
T Consensus 452 ~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~ 497 (906)
T COG0567 452 KIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVK 497 (906)
T ss_pred HHhcCCChhhhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHh
Confidence 9998888999999999999999999999999999999998876654
No 18
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.9e-28 Score=244.24 Aligned_cols=308 Identities=19% Similarity=0.238 Sum_probs=241.5
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcC------CCCCEE
Q 018037 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGI------TKKDSI 117 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l------~~~D~v 117 (362)
.|...+.|. -+..++.+|++.++-+.|+.+..||..+...+.+-+--| ..|.|....=....| +.+|+|
T Consensus 140 ~W~a~nFE~-l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG----gEGAESM~aFF~eLl~~sa~~~ie~vi 214 (913)
T KOG0451|consen 140 EWLARNFET-LDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG----GEGAESMLAFFWELLRDSAQANIEHVI 214 (913)
T ss_pred HHHHHHHHH-HHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc----cccHHHHHHHHHHHHHHHHhcCcceEE
Confidence 456666663 345689999999999999999999999988776533212 356665432122222 357999
Q ss_pred Ec-CchhHHHHHH--cCCCHHHHHHHHhCCCCCCC-C-CCCCc-cCCcc--------CC--CCcccCCccccchhHHHHH
Q 018037 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCS-H-GKGGS-MHFYK--------KD--SGFYGGHGIVGAQIPLGCG 181 (362)
Q Consensus 118 ~~-~yR~h~~~l~--rG~~~~~~lael~g~~~g~~-~-Grggs-~H~~~--------~~--~~~~~~~g~lG~~~p~A~G 181 (362)
++ .|||+...+. ...|+..+|.++.|.+.-.- . ..|.. .|+.. .. ..+.++.+++.+..|+|+|
T Consensus 215 igmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmG 294 (913)
T KOG0451|consen 215 IGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMG 294 (913)
T ss_pred EeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhc
Confidence 88 7999987664 58999999999999876321 1 11111 23211 01 1256889999999999999
Q ss_pred HHHHHhhCC--------------CCCeEEEEeCCcc-cccchHHHHHHHHHhCCCC---eEEEEEcCCcccccccccccC
Q 018037 182 LAFAQKYSK--------------DETVTFALYGDGA-ANQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAK 243 (362)
Q Consensus 182 ~A~A~k~~~--------------~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LP---vIfVv~NN~~gi~t~~~~~~~ 243 (362)
.+.+.+... .....|.++|||+ ++||.++|++|++...... .|++|.||+.|++++.++..+
T Consensus 295 KtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRS 374 (913)
T KOG0451|consen 295 KTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRS 374 (913)
T ss_pred chhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCccccccc
Confidence 999876431 1236788999999 6899999999998655444 489999999999999887664
Q ss_pred CchHhh---hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCC
Q 018037 244 SPSYYK---RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERD 319 (362)
Q Consensus 244 ~~~~~~---~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~D 319 (362)
+ .|++ +.++.|.++|||.||++|..|.+-|++|-|+ .+.++|++.|||.+||++-|++ +|++|-+|+++++ |.
T Consensus 375 s-~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp-~ftspvmyk~v~a-Re 451 (913)
T KOG0451|consen 375 S-AYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDP-TFTSPVMYKEVEA-RE 451 (913)
T ss_pred c-hhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCc-cccChhHHHHHHh-hh
Confidence 3 3443 4689999999999999999999999999999 9999999999999999999998 5999999999984 66
Q ss_pred HH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018037 320 PI-ERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359 (362)
Q Consensus 320 Pi-~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~ 359 (362)
.+ ..|.++|++.|++|+++++++..+..+.+++.++.+..
T Consensus 452 SvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~ 492 (913)
T KOG0451|consen 452 SVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPA 492 (913)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 55 57899999999999999999999999999998887654
No 19
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.91 E-value=2.1e-22 Score=213.22 Aligned_cols=133 Identities=27% Similarity=0.329 Sum_probs=116.4
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++...+|++|+++|+|+|+|+|.|+.+ .+.+|+|++|||++++|.+|||+++|+.|+|| +|+||+||+
T Consensus 103 ~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~ 182 (653)
T TIGR00232 103 AGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNR 182 (653)
T ss_pred CCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 3677889999999999999999999763 47889999999999999999999999999999 678999999
Q ss_pred cccccccccccCCchHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~~--g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~ 298 (362)
|+++++.+... ..++..+ +||++.++| ||||++++.+|+++|.+. +++|++|++.|+|++|.+.
T Consensus 183 ~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~--~~~P~~I~~~T~~g~G~~~ 249 (653)
T TIGR00232 183 ISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKAS--KDKPTLIEVTTTIGFGSPN 249 (653)
T ss_pred eeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecccCcc
Confidence 99999987765 4566664 599999999 999999999888776531 1489999999999999863
No 20
>PRK12754 transketolase; Reviewed
Probab=99.91 E-value=2.3e-22 Score=212.37 Aligned_cols=150 Identities=23% Similarity=0.230 Sum_probs=126.0
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCC----------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~----------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++...+|++|++++.|+|+|+|.|+.+ .+.+|+|++|||+++||++|||+++|+.|+|| +|+||+||+
T Consensus 107 pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~ 186 (663)
T PRK12754 107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 186 (663)
T ss_pred CCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 3678899999999999999999999875 37899999999999999999999999999999 579999999
Q ss_pred cccccccccccCCchHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC-C-CCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS-D-PGSTYR 306 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~~--g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~-D-~~~~YR 306 (362)
++++++.+... ..++..+ +||+++++ |||||++++.+|+++|... .++|++|+++|++.+|.+.. + +..+..
T Consensus 187 ~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~--~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~ 263 (663)
T PRK12754 187 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV--TDKPSLLMCKTIIGFGSPNKAGTHDSHGA 263 (663)
T ss_pred CccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc--CCCCEEEEEEeeeccCccccCCCccccCC
Confidence 99999888765 4677774 59999999 8999999999999887642 38899999999999998732 2 222222
Q ss_pred --ChhhHHhHh
Q 018037 307 --TRDEISGVR 315 (362)
Q Consensus 307 --~~~e~~~~~ 315 (362)
+++|++..+
T Consensus 264 ~l~~~~~~~~~ 274 (663)
T PRK12754 264 PLGDAEIALTR 274 (663)
T ss_pred CCCHHHHHHHH
Confidence 556666644
No 21
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.91 E-value=4.6e-23 Score=187.98 Aligned_cols=126 Identities=26% Similarity=0.306 Sum_probs=106.5
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccC
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK 243 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~ 243 (362)
++..++|++|+++|+|+|+|+|.|+++++++|||++|||++++|.+||+|++|+.+++|+|+||+||+|+++++... .
T Consensus 69 ~~~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~~--~ 146 (195)
T cd02007 69 YDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVGT--P 146 (195)
T ss_pred CceECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCCC--H
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999877652 1
Q ss_pred CchHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018037 244 SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (362)
Q Consensus 244 ~~~~~~~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~G 295 (362)
...|...+|++.. .|||+|++++.+++++|.+ .++|++|++.|++.+|
T Consensus 147 ~~~~~a~G~~~~~-~vdG~d~~~l~~a~~~a~~---~~~P~~I~~~T~kg~g 194 (195)
T cd02007 147 GNLFEELGFRYIG-PVDGHNIEALIKVLKEVKD---LKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHHhcCCCccc-eECCCCHHHHHHHHHHHHh---CCCCEEEEEEEecccC
Confidence 1223333444433 5899999999999888754 2899999999999876
No 22
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.90 E-value=1.2e-22 Score=213.77 Aligned_cols=229 Identities=23% Similarity=0.240 Sum_probs=161.0
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--CchhHH
Q 018037 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDHC 125 (362)
Q Consensus 49 ~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR~h~ 125 (362)
+++.|.+...++.++|.++- ..+|++=..+. .+. .|+.-.+.|---+.+++...++ +.|.++- .|.+..
T Consensus 3 ~i~~p~dl~~l~~~~l~~la---~~iR~~~i~~~--~~~---~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~ 74 (617)
T TIGR00204 3 LINSPQELRLLSIDELEKLC---DELRRYLLESV--SAS---GGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYP 74 (617)
T ss_pred CCCCHHHHhhCCHHHHHHHH---HHHHHHHHHHH--hcc---CCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHH
Confidence 46678888889988877664 44566433332 222 2555556777666677777777 6787655 455555
Q ss_pred HHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcc-cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc
Q 018037 126 TFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY-GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA 204 (362)
Q Consensus 126 ~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~-~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~ 204 (362)
+.+..|. . +-|..+ .+.. | -+.|....+..+. .++|++|+++|+|+|+|+|.|+++.+.+++|++|||++
T Consensus 75 ~~~~~G~-~-~~l~~~-r~~g----~--l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~ 145 (617)
T TIGR00204 75 HKLLTGR-R-EKFSTL-RQKK----G--LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAI 145 (617)
T ss_pred HHHHhCc-H-HHhcch-hhcC----C--cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCccc
Confidence 5555674 1 212111 1111 1 2234332222222 47899999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhCCCCeEEEEEcCCccccccccccc-----------------------C-Cc---------------
Q 018037 205 NQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-----------------------K-SP--------------- 245 (362)
Q Consensus 205 ~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~-----------------------~-~~--------------- 245 (362)
++|.+|||+|+|+.|+||+|+||+||+|+++++..... . .+
T Consensus 146 ~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 225 (617)
T TIGR00204 146 TAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMK 225 (617)
T ss_pred ccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhh
Confidence 99999999999999999999999999999987764210 0 00
Q ss_pred -------hHhhhcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 246 -------SYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 246 -------~~~~~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
-|.+ +|+..+ .|||||+.++.++++.+.+. ++|++|+++|.|..|.+..
T Consensus 226 ~~~~~~~~f~~--~G~~~~~~vDGhd~~~l~~al~~ak~~---~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 226 GLVVPGTFFEE--LGFNYIGPVDGHDLLELIETLKNAKKL---KGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred hccCccchHHH--cCCcEEcccCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCchh
Confidence 1333 444455 89999999999999866543 8899999999999997654
No 23
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.90 E-value=1.5e-22 Score=191.78 Aligned_cols=135 Identities=22% Similarity=0.307 Sum_probs=119.9
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCccccccccccc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA 242 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~ 242 (362)
++...+|++|+++|+|+|+|+|.++.++++.|+|++|||++++|.+||++++|+.++|| +++|++||+|++..+.....
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~ 178 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDIL 178 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhcc
Confidence 66677899999999999999999999999999999999999999999999999999998 78999999999887765554
Q ss_pred CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCC
Q 018037 243 KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300 (362)
Q Consensus 243 ~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D 300 (362)
...+|..+ ++|++++.|||+|++++.+++++|.+. .++|++|++.|.|.+||+...
T Consensus 179 ~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~--~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 179 FTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS--KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc--CCCCEEEEEEeecccccCccC
Confidence 56678774 599999999999999999999988752 278999999999999998543
No 24
>PTZ00089 transketolase; Provisional
Probab=99.90 E-value=8e-22 Score=209.09 Aligned_cols=150 Identities=23% Similarity=0.270 Sum_probs=127.8
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC----------CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~----------~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~ 232 (362)
++..++|++|++++.|+|+|+|.|+.+. +.+|+|++|||++++|++|||+|+|+.|+|| +|+||+||++
T Consensus 110 gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~ 189 (661)
T PTZ00089 110 GVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKI 189 (661)
T ss_pred CcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCc
Confidence 5567799999999999999999998643 7899999999999999999999999999998 6899999999
Q ss_pred ccccccccccCCchHhhh--cCCcceEEE-eCC-CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC---CC
Q 018037 233 GMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGM-DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS---TY 305 (362)
Q Consensus 233 gi~t~~~~~~~~~~~~~~--g~gi~g~~V-dG~-D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~---~Y 305 (362)
+++++..... ..++..+ ++|++++.| ||| |+.++++++++|++. .++|++|+++|+|++||.+.++.. .+
T Consensus 190 ~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~--~~~P~~I~~~T~kG~G~~~e~~~~~H~~~ 266 (661)
T PTZ00089 190 TIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS--KGKPKLIIVKTTIGYGSSKAGTEKVHGAP 266 (661)
T ss_pred ccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc--CCCcEEEEEEeeecCCCCcCCCCCccCCC
Confidence 9998887653 3455553 589999999 999 999999999988763 268999999999999987766432 36
Q ss_pred CChhhHHhHhh
Q 018037 306 RTRDEISGVRQ 316 (362)
Q Consensus 306 R~~~e~~~~~~ 316 (362)
++.+|++++++
T Consensus 267 ~~~~~~~~~~~ 277 (661)
T PTZ00089 267 LGDEDIAQVKE 277 (661)
T ss_pred CCHHHHHHHHH
Confidence 67888887754
No 25
>PRK05899 transketolase; Reviewed
Probab=99.89 E-value=2e-21 Score=205.19 Aligned_cols=148 Identities=24% Similarity=0.297 Sum_probs=125.9
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC----------CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~----------~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~ 232 (362)
++...+|++|+++|+|+|+|+|.++.+. +++|||++|||++++|.+||+|++|+.++|| +|+|++||+|
T Consensus 112 ~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~ 191 (624)
T PRK05899 112 GVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRI 191 (624)
T ss_pred CeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 5667799999999999999999998776 8899999999999999999999999999999 6899999999
Q ss_pred ccccccccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCC---
Q 018037 233 GMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRT--- 307 (362)
Q Consensus 233 gi~t~~~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~YR~--- 307 (362)
+++.+.... ..++|..+ ++|+++++|||+|++++.+++++|.+. ++|++|++.|+|.+||+..++...|+.
T Consensus 192 ~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~---~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~ 267 (624)
T PRK05899 192 SIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKAS---TKPTLIIAKTIIGKGAPNKEGTHKVHGAPL 267 (624)
T ss_pred ccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhc---CCCEEEEEEeEeccCCccccCCCcccCCCC
Confidence 998776533 34677774 599999999999999999999888754 899999999999999986654434553
Q ss_pred -hhhHHhHh
Q 018037 308 -RDEISGVR 315 (362)
Q Consensus 308 -~~e~~~~~ 315 (362)
+++++.+.
T Consensus 268 ~~~~~~~~~ 276 (624)
T PRK05899 268 GAEEIAAAK 276 (624)
T ss_pred CHHHHHHHH
Confidence 46666553
No 26
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.88 E-value=8e-22 Score=179.31 Aligned_cols=217 Identities=19% Similarity=0.208 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHH-HHHHhcCC--C-------CCEEEcCchhHHH---H--
Q 018037 63 ELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVA-IGMEAGIT--K-------KDSIITAYRDHCT---F-- 127 (362)
Q Consensus 63 ~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~-vg~~~~l~--~-------~D~v~~~yR~h~~---~-- 127 (362)
+..++-+....||+--.++. +.+| .|+++.+.+.--+. +-....|+ | .|+++-+ .+|+. +
T Consensus 6 ~~~~L~~~A~~iRr~~v~m~--~~~~--~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~ 80 (243)
T COG3959 6 SVDELERIAREIRRNIVRML--ANAG--SGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYAT 80 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHh--cccC--CCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHH
Confidence 34444555667787655443 3333 24555565554443 33344332 2 4666554 24432 1
Q ss_pred -HHcCCCHHHHHHHHhCCCCCCCCCCCCccCCcc-CCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccc
Q 018037 128 -LGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN 205 (362)
Q Consensus 128 -l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~-~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~ 205 (362)
..+|+-+++-+. -+++..+ --++|.-. .-.++..++|++|+++++|+|+|++.|+++.+..|+++.|||.++
T Consensus 81 Lae~G~~p~eeL~-~~~~~~s-----rL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~ 154 (243)
T COG3959 81 LAEKGYFPEEELE-TFRRIGS-----RLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD 154 (243)
T ss_pred HHHcCCCCHHHHH-HhccCCC-----cCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc
Confidence 235766555554 2222211 12245433 223677889999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhCCCC-eEEEEEcCCcccccccccccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCC
Q 018037 206 QGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNG 282 (362)
Q Consensus 206 ~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~g 282 (362)
+|++|||+.+|+.++|. +|.||+-|...+...+....+..++.+ ++||...++|||||++++.+|+..+..- +++
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~--~~r 232 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS--KGR 232 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc--CCC
Confidence 99999999999999998 578899998888777666555555665 4688889999999999999888776542 159
Q ss_pred CEEEEEEEec
Q 018037 283 PMILEMDTYR 292 (362)
Q Consensus 283 P~lIe~~tyR 292 (362)
|.+|.+.|.+
T Consensus 233 P~~IIa~Tvk 242 (243)
T COG3959 233 PTVIIAKTVK 242 (243)
T ss_pred CeEEEEeccc
Confidence 9999999865
No 27
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.88 E-value=2e-21 Score=203.69 Aligned_cols=231 Identities=21% Similarity=0.181 Sum_probs=161.0
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEcC--chh
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIITA--YRD 123 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~~--yR~ 123 (362)
...+..|.+...++.++|.++- ..+|+.-..+.. + + .|+.-.+.|---+.+.+...++ +.|.++-+ |.+
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~~a---~~iR~~~~~~~~--~-~--~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~ 78 (580)
T PRK05444 7 LDTINSPADLKKLSEEELPQLA---DEIREFLIDVVS--K-T--GGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQA 78 (580)
T ss_pred hhccCCHHHHhcCCHHHHHHHH---HHHHHHHHHHHH--h-c--CCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHH
Confidence 4456668888888888877663 345664433332 2 2 3544445665555555554554 45766543 443
Q ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCC--ccCCccCC-CCcccCCccccchhHHHHHHHHHHhhC-CCCCeEEEEe
Q 018037 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGG--SMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYS-KDETVTFALY 199 (362)
Q Consensus 124 h~~~l~rG~~~~~~lael~g~~~g~~~Grgg--s~H~~~~~-~~~~~~~g~lG~~~p~A~G~A~A~k~~-~~~~vvv~~~ 199 (362)
..++...|. . .++.. ..+-| +.|....+ .++..++|++|+++|+|+|+|+|.|++ ++++.|+|++
T Consensus 79 y~~~~~~g~-~----~~l~~------~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~ 147 (580)
T PRK05444 79 YPHKILTGR-R----DRFDT------LRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVI 147 (580)
T ss_pred HHHHHHhCc-H----HHhcC------cccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 333444454 1 12211 11111 23543322 356678999999999999999999988 5889999999
Q ss_pred CCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccccccccc---CCchHhh--hcCCcceE-EEeCCCHHHHHHHHHH
Q 018037 200 GDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA---KSPSYYK--RGDYVPGL-KVDGMDALAVKQACKF 273 (362)
Q Consensus 200 GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~---~~~~~~~--~g~gi~g~-~VdG~D~~av~~a~~~ 273 (362)
|||++++|.+||++++|+.+++|+|+|++||+|++++++.... ...++.. +++|++.+ .|||+|++++++++++
T Consensus 148 GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~ 227 (580)
T PRK05444 148 GDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKN 227 (580)
T ss_pred cccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999887764321 1122233 46888888 5899999999998887
Q ss_pred HHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 274 AKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 274 A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
|.+. ++|++|++.|.|.+|.+..
T Consensus 228 a~~~---~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 228 AKDL---KGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHhC---CCCEEEEEEecCCcCCChh
Confidence 6643 8999999999999998744
No 28
>PRK12753 transketolase; Reviewed
Probab=99.88 E-value=5.5e-21 Score=202.57 Aligned_cols=134 Identities=22% Similarity=0.243 Sum_probs=117.8
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhCCC----------CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~~~----------~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|++++.|+|+|+|.|+.+. +.+|+|++|||++++|.+|||+|+|+.|+|| +|+||+||+
T Consensus 107 pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~ 186 (663)
T PRK12753 107 PGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNG 186 (663)
T ss_pred CCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 36778999999999999999999998652 6899999999999999999999999999998 688999999
Q ss_pred cccccccccccCCchHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~~--g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
++++++..... ..++..+ +||++++. |||||++++++|+++|.+. .++|++|+++|++.+|++..
T Consensus 187 ~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~--~~~P~~I~~~T~kG~G~~~~ 254 (663)
T PRK12753 187 ISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSV--KDKPSLIICRTIIGFGSPNK 254 (663)
T ss_pred CcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHC--CCCeEEEEEEEeecCCCCcc
Confidence 99999887654 4566664 59999995 9999999999999988752 37899999999999999843
No 29
>PLN02790 transketolase
Probab=99.88 E-value=7.1e-21 Score=201.67 Aligned_cols=134 Identities=25% Similarity=0.303 Sum_probs=116.5
Q ss_pred CCcccCCccccchhHHHHHHHHHHhh-----CCC-----CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKY-----SKD-----ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~-----~~~-----~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|+++|.|+|+|+|.|+ +++ +.+|+|++|||++++|++|||+|+|+.|+|| +|+||+||+
T Consensus 98 pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~ 177 (654)
T PLN02790 98 PGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNH 177 (654)
T ss_pred CCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 36788999999999999999999995 343 6899999999999999999999999999998 788999999
Q ss_pred cccccccccccCCchHhh--hcCCcceEEEeC--CCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYK--RGDYVPGLKVDG--MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~--~g~gi~g~~VdG--~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
|+++++..... ..++.. .+||++++.||| +|++++++|+++|.+. .++|++|+++|++.+|.+..
T Consensus 178 ~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~--~~~P~lI~~~T~kG~G~~~~ 246 (654)
T PLN02790 178 ISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV--TDKPTLIKVTTTIGYGSPNK 246 (654)
T ss_pred ccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc--CCCeEEEEEEEeecCCCccc
Confidence 99999887654 345555 359999999988 8999999999888752 38999999999999998743
No 30
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.85 E-value=8.3e-20 Score=193.08 Aligned_cols=234 Identities=20% Similarity=0.192 Sum_probs=159.5
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--Cchh
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR~ 123 (362)
..+++.|.+...++.++|.++- ..+|++=..+. .+.+ |+.-.+.|---+.+++...++ |.|.++- .|.+
T Consensus 9 l~~i~~p~dl~~l~~~~l~~~a---~~iR~~ii~~~--~~~~---GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~ 80 (641)
T PRK12571 9 LDRIKGPADLRALSDAELEQLA---DELRAEVISAV--SETG---GHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQC 80 (641)
T ss_pred hhhcCCHHHHHhCCHHHHHHHH---HHHHHHHHHHH--HHhC---CCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHH
Confidence 5566778888999988877663 44566433332 2332 555557777666666766564 6786654 4555
Q ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCC-CcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCc
Q 018037 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS-GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (362)
Q Consensus 124 h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~-~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDG 202 (362)
..+.+..|. .+-|..+. +..+ . +.|....+. .-....|+-+.+++.|+|+|+|.++.++++.|+|++|||
T Consensus 81 Y~~~~l~g~--~~~l~~~r-~~~~----l--~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG 151 (641)
T PRK12571 81 YPHKILTGR--RDRFRTLR-QKGG----L--SGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDG 151 (641)
T ss_pred HHHHHHhCC--HHHHhhhh-hCCC----c--CCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCc
Confidence 555555564 22222111 1111 1 123322211 101223444667899999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccc-------cccCCchH----------------------------
Q 018037 203 AANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW-------RAAKSPSY---------------------------- 247 (362)
Q Consensus 203 a~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~-------~~~~~~~~---------------------------- 247 (362)
++++|.+||++++|+.|++|+|+|++||+|+++++.. .......|
T Consensus 152 ~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (641)
T PRK12571 152 SLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRAREL 231 (641)
T ss_pred hhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHh
Confidence 9999999999999999999999999999999887764 11111111
Q ss_pred -------hh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 248 -------YK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 248 -------~~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
.. +++|+..+ .|||||++++.+++++|.+. .++|++|+++|.+.+|.+..
T Consensus 232 ~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~--~~~P~~I~~~T~kGkG~~~~ 291 (641)
T PRK12571 232 VTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR--ADGPVLVHVVTEKGRGYAPA 291 (641)
T ss_pred hhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC--CCCCEEEEEEecCccCcchh
Confidence 01 34788888 79999999999999888752 28899999999999998743
No 31
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.85 E-value=9.1e-20 Score=192.61 Aligned_cols=234 Identities=19% Similarity=0.182 Sum_probs=161.4
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--Cchh
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR~ 123 (362)
..++..|.+...++.++|.++-. .+|+.-..+. .+.| |+.-.+.|---+.+++...++ |.|.++- .|-.
T Consensus 34 l~~i~~p~dlk~l~~~~l~~la~---~iR~~ii~~~--~~~~---GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~a 105 (677)
T PLN02582 34 LDTINYPIHMKNLSVKELKQLAD---ELRSDVIFNV--SKTG---GHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQS 105 (677)
T ss_pred hhhCCCHHHHhhCCHHHHHHHHH---HHHHHHHHHH--HhcC---CCcCccccHHHHHHHHHHhhCCCCCeEEEECcchH
Confidence 55667788888999999887744 4565433332 2332 555557777666666766665 7897766 4555
Q ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCC-CCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCc
Q 018037 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (362)
Q Consensus 124 h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~-~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDG 202 (362)
.++.+..|.. .++..-.. .| +-+.|....+ .+...++|++|.++++|+|+|+|.++++.++++||++|||
T Consensus 106 y~~~~l~gr~-----~~l~~~r~---~g-~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG 176 (677)
T PLN02582 106 YPHKILTGRR-----DKMHTMRQ---TN-GLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDG 176 (677)
T ss_pred HHHHHHHccH-----HHhccccc---CC-CcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 5555555641 11111000 00 1223432211 2445679999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhCCCCeEEEEEcCCc-cc--------ccccccc-------cCCch--------------------
Q 018037 203 AANQGQLFEALNIAALWDLPAILVCENNHY-GM--------GTAEWRA-------AKSPS-------------------- 246 (362)
Q Consensus 203 a~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi--------~t~~~~~-------~~~~~-------------------- 246 (362)
++++|++|||||+|+.|++|+|+||+||+. ++ +...... ..++.
T Consensus 177 ~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (677)
T PLN02582 177 AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMH 256 (677)
T ss_pred ccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHH
Confidence 999999999999999999999999999997 33 1111000 00000
Q ss_pred -Hhh------------------hcCCcceE-EEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018037 247 -YYK------------------RGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 247 -~~~------------------~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~ 299 (362)
+.. .++|+.++ .|||||++++.++++.+.+. . ++|++|+++|-+.+|...+
T Consensus 257 ~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 257 ELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 000 23667655 89999999999999988764 2 5999999999999999865
No 32
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.84 E-value=5.6e-19 Score=174.35 Aligned_cols=163 Identities=21% Similarity=0.158 Sum_probs=127.3
Q ss_pred CcccCCccccchhHHHHHHHHHHhh-------CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcccc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~-------~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~ 235 (362)
++..++|++|.++++|+|+|+|.|+ .+.+..|+|++|||++++|++||++++|+.++|. +|+|+++|+.++.
T Consensus 112 gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qid 191 (386)
T cd02017 112 FWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLD 191 (386)
T ss_pred CeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccC
Confidence 4777899999999999999999998 5578899999999999999999999999999996 7889999999988
Q ss_pred cccccc-cCCchHhh--hcCCcceEEEe----------------------------------------------------
Q 018037 236 TAEWRA-AKSPSYYK--RGDYVPGLKVD---------------------------------------------------- 260 (362)
Q Consensus 236 t~~~~~-~~~~~~~~--~g~gi~g~~Vd---------------------------------------------------- 260 (362)
.+++.. ....++.. ++||...+.||
T Consensus 192 G~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 192 GPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred CcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 777653 23345665 35888889998
Q ss_pred -----------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC--C-CCCCCC---CChhhHHhHhhc
Q 018037 261 -----------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM--S-DPGSTY---RTRDEISGVRQE 317 (362)
Q Consensus 261 -----------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~--~-D~~~~Y---R~~~e~~~~~~~ 317 (362)
|||+.++.+|+.++... +++|++|.+.|.+.+|.+. . ++..++ -+++|+++.++.
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~--~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~ 349 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH--KGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDR 349 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC--CCCCeEEEEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHH
Confidence 99999999999887752 3789999999999999872 2 333222 255666665433
Q ss_pred CCHHHHHHHHHH
Q 018037 318 RDPIERIRKLIL 329 (362)
Q Consensus 318 ~DPi~~~~~~L~ 329 (362)
-+ +.++...+.
T Consensus 350 lg-~~~~~~~~~ 360 (386)
T cd02017 350 FG-IPVSDEQLE 360 (386)
T ss_pred cC-CCCCHHHhc
Confidence 32 344444443
No 33
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.84 E-value=2e-20 Score=173.14 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=135.0
Q ss_pred cchHHHHHHHHhcCCC-CCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchh
Q 018037 98 DGQEAVAIGMEAGITK-KDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQI 176 (362)
Q Consensus 98 ~GqEa~~vg~~~~l~~-~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~ 176 (362)
.||++.++.....|.. .|.+++.|+.+..- +.++|.++ + ...| .++|......++...+|.||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~g------l~~lf~qf-s----~~gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEG------MRKLFKQF-S----FPGG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHH------HHHHHHhc-C----CCCC--CCCCCcccCCCeeecccchhhHH
Confidence 5999999877778877 59999999977521 24566665 1 2222 56788766678999999999999
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchH---HHHHHHHHhCCCC-eEEEEEcCCcccccccccc-cCCchHhhh-
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVCENNHYGMGTAEWRA-AKSPSYYKR- 250 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~---~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~-~~~~~~~~~- 250 (362)
++|+|+|+ ++++.+|+|++|||++++|.+ ||+.+++...++. |+.|++||+|.|++++... ....++.++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999985 568899999999999999996 8888888888988 5678899999999998855 334567664
Q ss_pred -cCCcceEEEeCCCHHHHHHHHHHHHHHhc
Q 018037 251 -GDYVPGLKVDGMDALAVKQACKFAKEHAL 279 (362)
Q Consensus 251 -g~gi~g~~VdG~D~~av~~a~~~A~~~ar 279 (362)
+||++.+.|||+|+++|++++++|++++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999888765
No 34
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.84 E-value=1e-19 Score=178.13 Aligned_cols=182 Identities=23% Similarity=0.316 Sum_probs=126.2
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhC----------CCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYS----------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~----------~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|++|++++.|+|+|+|.|+. ..+..|+|++|||.+++|++|||+.+|+.++|. +|+|+++|+
T Consensus 104 ~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~ 183 (332)
T PF00456_consen 104 PGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNG 183 (332)
T ss_dssp TT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEES
T ss_pred ceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCC
Confidence 356678999999999999999998863 236789999999999999999999999999999 788999999
Q ss_pred cccccccccccCCchHhh--hcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCC--CCCCCC
Q 018037 232 YGMGTAEWRAAKSPSYYK--RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD--PGSTYR 306 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~--~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D--~~~~YR 306 (362)
.++..+.+... ..++.. ++||...++| ||+|++++.+|+++|... +++|++|.+.|.+.+|.+... ...++.
T Consensus 184 ~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~--~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg~ 260 (332)
T PF00456_consen 184 IQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS--KGKPTVIIARTVKGKGVPFMEGTAKWHGS 260 (332)
T ss_dssp EETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS--TSS-EEEEEEE-TTTTSTTTTTSGGGTSS
T ss_pred cccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc--CCCCceeecceEEecCchhhcccchhhcc
Confidence 98877665433 234544 3688888998 999999999999988641 289999999999999996432 222332
Q ss_pred --ChhhHHhHhhc----C-------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 018037 307 --TRDEISGVRQE----R-------DPIERIRKLILAHDLATEKELKDIEKEVRK 348 (362)
Q Consensus 307 --~~~e~~~~~~~----~-------DPi~~~~~~L~~~g~~t~~el~~i~~e~~~ 348 (362)
+.||+++.++. . |....|++...+ |-..++++++.-++.++
T Consensus 261 ~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~-g~~~~~~W~~~~~~y~~ 314 (332)
T PF00456_consen 261 PLTEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAE-GAKAEAEWKELFAAYKK 314 (332)
T ss_dssp --HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH
Confidence 56667665531 1 234455555433 43344444444444433
No 35
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.84 E-value=2.9e-19 Score=187.49 Aligned_cols=237 Identities=17% Similarity=0.162 Sum_probs=158.8
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEcC--chh
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIITA--YRD 123 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~~--yR~ 123 (362)
.-.++.|.+...++.++|.++- ..+|+.=..+ .++. .|++-.+.|---+.+++...++ |.|.++-+ |-+
T Consensus 67 l~~i~~p~~~k~l~~~~L~~la---~eiR~~ii~~--~~~~---~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqa 138 (641)
T PLN02234 67 LDTINHPMHMKNLSIKELKVLS---DELRSDVIFN--VSKT---GGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQS 138 (641)
T ss_pred hhhcCCHHHHhhCCHHHHHHHH---HHHHHHHHHH--Hhhc---CCCccccchHHHHHHHHHHhcCCCCCeEEEecchhH
Confidence 3455556666777777777664 3456533222 2222 3666667887777777777665 77877663 444
Q ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCC-CCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCc
Q 018037 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (362)
Q Consensus 124 h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~-~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDG 202 (362)
.++.+..|.- .-|..+ +.. .| -+.|....+ .+...++|++|.++++|+|+|+|.++++.+..|||++|||
T Consensus 139 ya~~~ltgr~--~~l~t~--r~~---gg--l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDG 209 (641)
T PLN02234 139 YPHKILTGRR--GKMKTI--RQT---NG--LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDG 209 (641)
T ss_pred HHHHHHHhhh--hhhccc--ccC---CC--cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccc
Confidence 4444444431 001110 011 11 123432212 2456789999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhCCCCeEEEEEcCCcc------ccccccccc----------CCc-----hHhh--hcCCcceE-E
Q 018037 203 AANQGQLFEALNIAALWDLPAILVCENNHYG------MGTAEWRAA----------KSP-----SYYK--RGDYVPGL-K 258 (362)
Q Consensus 203 a~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g------i~t~~~~~~----------~~~-----~~~~--~g~gi~g~-~ 258 (362)
++++|++|||+|.|+..+-++|+|+++|+.. ...+..... .++ .... +++|+..+ .
T Consensus 210 el~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~ 289 (641)
T PLN02234 210 AMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGP 289 (641)
T ss_pred hhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEee
Confidence 9999999999999997776789999999873 211111100 000 1122 34788888 9
Q ss_pred EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCC
Q 018037 259 VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDP 301 (362)
Q Consensus 259 VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~ 301 (362)
|||||++++.++++++.+. +.++|++|+++|.+..|.+....
T Consensus 290 vDGHd~~~l~~al~~~k~~-~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 290 VDGHNIDDLVSILETLKST-KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred ECCCCHHHHHHHHHHHHhc-CCCCCEEEEEEEecCCCcchhhc
Confidence 9999999999999887643 11589999999999999986643
No 36
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.81 E-value=4.8e-19 Score=170.50 Aligned_cols=165 Identities=20% Similarity=0.152 Sum_probs=132.7
Q ss_pred CchhHHHHHHcCCCHH-HHHHHHhCCCC------CCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCC
Q 018037 120 AYRDHCTFLGRGGTLL-EVFSELMGRKD------GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192 (362)
Q Consensus 120 ~yR~h~~~l~rG~~~~-~~lael~g~~~------g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~ 192 (362)
.||+|+++...|.++. .++.+.+|+.+ ||+.+.++.+|+... ++.+.++++|.+.++|.|+++|.++.+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5789999999999988 89999998877 888888888877654 56677899999999999999999887665
Q ss_pred Ce-EEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccccccccc-----------------CCchHhh--hcC
Q 018037 193 TV-TFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-----------------KSPSYYK--RGD 252 (362)
Q Consensus 193 ~v-vv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~-----------------~~~~~~~--~g~ 252 (362)
.+ |++++|||++..+.+ |+|+.|..|++|++|||+||.+.+.|-.+... ...|+.. .++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 45 555999999888776 99999999999999999999985443222111 1123333 357
Q ss_pred CcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 253 YVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 253 gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
|++.+ +++-.|+.++.+++++|+++ +||.+|++.+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~~---~Gps~I~~~s 206 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKEI---RGFKFIHLLA 206 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 87765 67888999999999999976 9999999984
No 37
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.78 E-value=5.1e-17 Score=173.05 Aligned_cols=187 Identities=20% Similarity=0.140 Sum_probs=134.1
Q ss_pred HHHHhcCCC------CCEEEcCchhHHHHH------HcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccc
Q 018037 105 IGMEAGITK------KDSIITAYRDHCTFL------GRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172 (362)
Q Consensus 105 vg~~~~l~~------~D~v~~~yR~h~~~l------~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~l 172 (362)
++....|+. .|.|++ .+|+... ..|.-..+-|..+ .+... ..|-++..|......++-..+|+|
T Consensus 116 vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA~L~l~G~ls~e~L~~F-Rq~~~-g~gL~shPhp~~~p~~ve~sTGSL 191 (885)
T TIGR00759 116 VGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYARAFLEGRLTEEQLDNF-RQEVQ-GDGLSSYPHPWLMPDFWQFPTVSM 191 (885)
T ss_pred HHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHHHHHHcCCCCHHHHHHh-cCCCC-CCCCCCCCCcCcCCCCEEeCCCCc
Confidence 455556664 688776 4565422 2465333333333 22211 122222233222111356789999
Q ss_pred cchhHHHHHHHHHHhh-------CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcccccccccccC-
Q 018037 173 GAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK- 243 (362)
Q Consensus 173 G~~~p~A~G~A~A~k~-------~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~~- 243 (362)
|.+++.|+|.|++.|| ++.+..|+|++|||.++||++|||+.+|+.++|. +|+||++|...+..++.....
T Consensus 192 G~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i 271 (885)
T TIGR00759 192 GLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKI 271 (885)
T ss_pred cHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCcccccccc
Confidence 9999999999999997 5678899999999999999999999999999998 679999999988777654322
Q ss_pred CchHhh--hcCCcceEEE--------------------------------------------------------------
Q 018037 244 SPSYYK--RGDYVPGLKV-------------------------------------------------------------- 259 (362)
Q Consensus 244 ~~~~~~--~g~gi~g~~V-------------------------------------------------------------- 259 (362)
..++.+ +++|...++|
T Consensus 272 ~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~ 351 (885)
T TIGR00759 272 IQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDA 351 (885)
T ss_pred chhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchh
Confidence 234444 4577777888
Q ss_pred -------eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018037 260 -------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (362)
Q Consensus 260 -------dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs 297 (362)
+|||+.+|++|++.|.+. +++|++|.++|.+.+|.+
T Consensus 352 ~i~~l~rgGHD~~~I~~A~~~A~~~--~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 352 DIWALNRGGHDPRKVYAAYAAAQEH--KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred hhhhccCCCCCHHHHHHHHHHHHhC--CCCCEEEEEeeeecCCCC
Confidence 599999999999988764 257999999999999987
No 38
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.78 E-value=2.2e-18 Score=161.55 Aligned_cols=218 Identities=24% Similarity=0.326 Sum_probs=142.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--CchhHH
Q 018037 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDHC 125 (362)
Q Consensus 49 ~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR~h~ 125 (362)
+++.|.+...+|.+||.++-. .+|.+=. ... .+..|++-++.|---..+++...++ |.|.|+- .|.+..
T Consensus 3 ~I~~p~dlk~ls~~eL~~La~---eiR~~ii--~~v---s~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~ 74 (270)
T PF13292_consen 3 KINSPEDLKKLSIEELEQLAQ---EIREFII--ETV---SKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYV 74 (270)
T ss_dssp G-SSHHHHTTS-GGGHHHHHH---HHHHHHH--HHC---TCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HH
T ss_pred CCCCHHHHHcCCHHHHHHHHH---HHHHHHH--HHH---hhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccch
Confidence 566787888899999988854 4565532 222 3345777778999999999999997 7898876 577776
Q ss_pred HHHHcCCCHHHHHHHHhCCCCCCC--CCCCCccCCccC---CCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeC
Q 018037 126 TFLGRGGTLLEVFSELMGRKDGCS--HGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (362)
Q Consensus 126 ~~l~rG~~~~~~lael~g~~~g~~--~Grggs~H~~~~---~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~G 200 (362)
|-+ |.||..... +-.||-.-|..+ +... .+.|+-+.++++|+|+|.|.++++.+..+|+++|
T Consensus 75 HKi------------LTGR~~~f~TlRq~gGlSGF~~r~ES~~D~-f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIG 141 (270)
T PF13292_consen 75 HKI------------LTGRRDRFHTLRQYGGLSGFPKRSESEYDA-FGAGHSSTSISAALGMAVARDLKGEDRKVVAVIG 141 (270)
T ss_dssp HHH------------CTTTCCCGGGTTSTTS--SS--TTT-TT---S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEE
T ss_pred hhh------------ccCcHHHhchhhhcCCcCCCCCcccCCCCc-ccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 655 455655322 222332222221 1222 3679999999999999999999999999999999
Q ss_pred CcccccchHHHHHHHHHhCCCCeEEEEEcCCccccccccc-------ccCCchH--------------------hh----
Q 018037 201 DGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR-------AAKSPSY--------------------YK---- 249 (362)
Q Consensus 201 DGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~-------~~~~~~~--------------------~~---- 249 (362)
|||+.-|..+||||.|...+-++|+|++||+..|+.+..- ....+.| ..
T Consensus 142 DGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~ 221 (270)
T PF13292_consen 142 DGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKE 221 (270)
T ss_dssp TTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC------------------------------------
T ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 9999999999999999999999999999999988755321 0000100 00
Q ss_pred --hc--------CCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 250 --RG--------DYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 250 --~g--------~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
+. .|+.++ .|||||++++.++++.+++. +||+||++.|
T Consensus 222 s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~---~gPvllHV~T 270 (270)
T PF13292_consen 222 SLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAKDI---DGPVLLHVIT 270 (270)
T ss_dssp -------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS---SSEEEEEEE-
T ss_pred hhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC---CCCEEEEEeC
Confidence 11 244443 78999999999888877654 9999999987
No 39
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.77 E-value=1e-16 Score=172.31 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=110.7
Q ss_pred cccCCccccchhHHHHHHHHHHhhCC-------CCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCccccc
Q 018037 165 FYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGT 236 (362)
Q Consensus 165 ~~~~~g~lG~~~p~A~G~A~A~k~~~-------~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t 236 (362)
+-..+|+||.+++.|+|+|++.||.. .+..|+|++|||.++||++|||+.+|+.++|. +|+|+++|...+..
T Consensus 184 ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG 263 (889)
T TIGR03186 184 WQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDG 263 (889)
T ss_pred eEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Confidence 55689999999999999999988532 36889999999999999999999999999998 67999999998877
Q ss_pred ccccccC-CchHhh--hcCCcceEEE------------------------------------------------------
Q 018037 237 AEWRAAK-SPSYYK--RGDYVPGLKV------------------------------------------------------ 259 (362)
Q Consensus 237 ~~~~~~~-~~~~~~--~g~gi~g~~V------------------------------------------------------ 259 (362)
+...... ..++.+ +++|...++|
T Consensus 264 ~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~ 343 (889)
T TIGR03186 264 PVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAA 343 (889)
T ss_pred ccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHH
Confidence 7664221 234554 4677777888
Q ss_pred ---------------eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018037 260 ---------------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 260 ---------------dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~ 298 (362)
+|||+.+|++|++.|++. +++|++|.++|.+.+|-+.
T Consensus 344 lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~--~~~PTvIla~TvkG~G~~~ 395 (889)
T TIGR03186 344 LVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH--EGRPTVILAKTMKGFGMGA 395 (889)
T ss_pred HhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecCCCCc
Confidence 699999999999998863 3689999999999999644
No 40
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.76 E-value=2.4e-17 Score=168.27 Aligned_cols=229 Identities=21% Similarity=0.245 Sum_probs=165.0
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--Cchh
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR~ 123 (362)
..++..|.+...+|.++|.++-. .+|.+= +...-+. .|++-++.|---..+++...++ |.|.++- .|..
T Consensus 5 L~~i~~P~dLk~ls~~eL~~La~---EiR~~l--i~~vS~~---GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQa 76 (627)
T COG1154 5 LDKINSPADLKKLSIEELPQLAD---EIREFL--LEVVSAT---GGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQA 76 (627)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHH--HHHhccC---CCccCCCcChhhhhHHHHHHhCCCCCCeEEecCccc
Confidence 34566788889999999998854 356542 2222233 4777779999999999999997 7887765 6777
Q ss_pred HHHHHHcCCCHHHHHHHHhCCCCCCCCCC--CCccCCcc---CCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEE
Q 018037 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGK--GGSMHFYK---KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFAL 198 (362)
Q Consensus 124 h~~~l~rG~~~~~~lael~g~~~g~~~Gr--ggs~H~~~---~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~ 198 (362)
..|-+..|. ......-| +|-.-+.. .++.+ .+.|+-+.++++|+|+|.|..+++.++.||++
T Consensus 77 YpHKiLTGR------------~e~f~tlRq~~GlsGf~~r~ESe~D~-f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaV 143 (627)
T COG1154 77 YPHKILTGR------------REQFDTLRQKDGLSGFPKREESEHDW-FGVGHSSTSISAALGMAKARDLKGEDRNVVAV 143 (627)
T ss_pred chhHHhcCc------------hhhcchhhhcCCCCCCCCcccCCCcc-cccCchHHHHHHHhhHHHHHHhcCCCCcEEEE
Confidence 777665543 32221111 11111111 12233 36799999999999999999999999999999
Q ss_pred eCCcccccchHHHHHHHHH-hCCCCeEEEEEcCCccccccccc-------ccCCc---------------------hHhh
Q 018037 199 YGDGAANQGQLFEALNIAA-LWDLPAILVCENNHYGMGTAEWR-------AAKSP---------------------SYYK 249 (362)
Q Consensus 199 ~GDGa~~~G~~~Ealn~A~-~~~LPvIfVv~NN~~gi~t~~~~-------~~~~~---------------------~~~~ 249 (362)
+||||+.-|..+||||.|. ..+-|+|+|+++|..+|+.+..- ....+ ++..
T Consensus 144 IGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~ 223 (627)
T COG1154 144 IGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAK 223 (627)
T ss_pred ECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHH
Confidence 9999999999999999998 55678999999999999765431 00011 0000
Q ss_pred ------hc----------CCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018037 250 ------RG----------DYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 250 ------~g----------~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~ 299 (362)
++ +|+.++ .|||||++++..+++.+.+. ++|+||++.|-+..|...+
T Consensus 224 r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~---~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 224 RAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKDL---KGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred HHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCChh
Confidence 11 233333 68999999999999888765 9999999999999998755
No 41
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.75 E-value=6.6e-18 Score=153.98 Aligned_cols=120 Identities=23% Similarity=0.234 Sum_probs=95.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEE-EcCCccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv-~NN~~gi~t~~~~----- 240 (362)
++.|+||+++|+|+|+++|. +++.|||++|||++.+. ..| |.+|+++++|+++|| +|++|++......
T Consensus 50 ~~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~ 123 (196)
T cd02013 50 LSFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNN 123 (196)
T ss_pred CCCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCC
Confidence 35689999999999999985 68899999999998884 566 888999999987666 5556886432111
Q ss_pred -----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 241 -----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 241 -----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
....+||.+ ++||+++.+|+ ++.++.+++++|++.++.++|+|||+.+.+..
T Consensus 124 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 124 RFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred CcccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 113478887 45999999997 68999999999998665699999999996644
No 42
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.74 E-value=5.5e-16 Score=167.24 Aligned_cols=201 Identities=19% Similarity=0.185 Sum_probs=139.1
Q ss_pred ccccccccCcchH-HHHHHHHhcCC------CCCEEEcCchhHHHHH------HcCC-CHHHHHHHHhCCCCCCCCCCCC
Q 018037 89 LVRGFCHLYDGQE-AVAIGMEAGIT------KKDSIITAYRDHCTFL------GRGG-TLLEVFSELMGRKDGCSHGKGG 154 (362)
Q Consensus 89 ~i~gf~h~~~GqE-a~~vg~~~~l~------~~D~v~~~yR~h~~~l------~rG~-~~~~~lael~g~~~g~~~Grgg 154 (362)
++.|+.-.+.+-- -..++....|+ ..|.|++ .+|+... ..|. +.++ |..+ .+... ..|-.+
T Consensus 113 ~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~~~l~G~l~~e~-L~~f-R~~~~-~~gl~~ 187 (896)
T PRK13012 113 ELGGHIASYASAADLFEVGFNHFFRGRDDAGGGDLVYF--QPHSAPGIYARAFLEGRLSEEQ-LDHF-RQEIG-GPGLSS 187 (896)
T ss_pred CCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCCEEEE--CcchHHHHHHHHHHcCCCCHHH-HHHh-cCCCC-CCCCCC
Confidence 3445433343332 22355656676 5788776 3565422 2354 4333 3322 22211 122222
Q ss_pred ccCCcc-CCCCcccCCccccchhHHHHHHHHHHhh-------CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEE
Q 018037 155 SMHFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AIL 225 (362)
Q Consensus 155 s~H~~~-~~~~~~~~~g~lG~~~p~A~G~A~A~k~-------~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIf 225 (362)
..|... |+ .+-..+|+||.+++.|+|.|++.|| ...++.|+|++|||.+++|+.|||+.+|+.++|. +||
T Consensus 188 ~P~p~~~p~-~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ 266 (896)
T PRK13012 188 YPHPWLMPD-FWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVF 266 (896)
T ss_pred CCCcCCCCC-CEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEE
Confidence 223221 21 3556799999999999999999984 4567899999999999999999999999999998 689
Q ss_pred EEEcCCcccccccccccC-CchHhh--hcCCcceEEE--------------------------e----------------
Q 018037 226 VCENNHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKV--------------------------D---------------- 260 (362)
Q Consensus 226 Vv~NN~~gi~t~~~~~~~-~~~~~~--~g~gi~g~~V--------------------------d---------------- 260 (362)
||++|...+..+...... ..++.+ +++|...++| |
T Consensus 267 ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~ 346 (896)
T PRK13012 267 VINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNRE 346 (896)
T ss_pred EEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHH
Confidence 999999988777654322 234444 4677778888 8
Q ss_pred ---------------------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018037 261 ---------------------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (362)
Q Consensus 261 ---------------------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs 297 (362)
|||+.+|++|++.|.+. +++|++|.++|.+.+|-+
T Consensus 347 ~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~--~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 347 HFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH--KGQPTVILAKTKKGYGMG 408 (896)
T ss_pred HhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecCCCC
Confidence 99999999999988753 368999999999999975
No 43
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.73 E-value=2.4e-17 Score=146.82 Aligned_cols=113 Identities=21% Similarity=0.217 Sum_probs=89.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEc-CCcccccccccc----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN-NHYGMGTAEWRA---- 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~N-N~~gi~t~~~~~---- 241 (362)
++.|+||+++|+|+|+++|. ++++|||++|||++++. .++|.+|+.++||+++||.| |+|++.....+.
T Consensus 45 ~~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 118 (172)
T cd02004 45 GTFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGL 118 (172)
T ss_pred CCCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccC
Confidence 45689999999999999986 67899999999999874 35699999999998766655 568876433221
Q ss_pred -------cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 242 -------AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 242 -------~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
...+||.+. +||+++.+|+ +++++.++++++.+. ++|+|||+.+
T Consensus 119 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i 171 (172)
T cd02004 119 GLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALAS---GKPALINVII 171 (172)
T ss_pred CCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHHc---CCCEEEEEEc
Confidence 134688774 5999999998 588888888887753 8999999975
No 44
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.73 E-value=1.5e-16 Score=167.62 Aligned_cols=223 Identities=16% Similarity=0.112 Sum_probs=164.5
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccccccCcchHHHHHHHHhcCC-CCCEEEc--Cch
Q 018037 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSL-YKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYR 122 (362)
Q Consensus 47 ~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l-~~~g~i~gf~h~~~GqEa~~vg~~~~l~-~~D~v~~--~yR 122 (362)
..+++.|.+...|+.+||.++-. .+|.+-. ... .+. .|++-++.|---..++++..++ |.|.|+- .|.
T Consensus 79 L~~i~~P~dlk~L~~~eL~~La~---EiR~~li--~~v~s~~---GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ 150 (701)
T PLN02225 79 LDSIETPLQLKNLSVKELKLLAD---EIRTELH--SVLWKKT---QKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQ 150 (701)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHHH--HHhhccc---CCCcCCCccHHHHHHHHHHHhCCCCCceeeccccc
Confidence 55667788889999999998854 4676532 233 234 4777789999999999999997 8898876 677
Q ss_pred hHHHHHHcCCCHHHHHHHHhCCCCCC-CCCCCCccCCccC---CCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEE
Q 018037 123 DHCTFLGRGGTLLEVFSELMGRKDGC-SHGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFAL 198 (362)
Q Consensus 123 ~h~~~l~rG~~~~~~lael~g~~~g~-~~Grggs~H~~~~---~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~ 198 (362)
+..|-+..|.- ... ++-.+|-.-|.++ ++.. .+.||-+..+++|+|+|.|..+++.++.||++
T Consensus 151 ~Y~HKiLTGR~------------~~f~~Rq~~GlsGf~~r~ES~~D~-f~~GHssTSiSaalG~a~ardl~g~~~~vvaV 217 (701)
T PLN02225 151 TYAHKVLTRRW------------SAIPSRQKNGISGVTSQLESEYDS-FGTGHGCNSISAGLGLAVARDIKGKRDRVVAV 217 (701)
T ss_pred cchhhHhcCCh------------hhcCccccCCcCCCCCCCCCCCCC-CCCChHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 77777755533 211 1222232222222 2222 36799999999999999999999999999999
Q ss_pred eCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccc--------ccc-------ccCCc------------------
Q 018037 199 YGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA--------EWR-------AAKSP------------------ 245 (362)
Q Consensus 199 ~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~--------~~~-------~~~~~------------------ 245 (362)
+||||+.-|+.+||||.|...+-++|+|++||+++|+.+ ..- ...++
T Consensus 218 IGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~ 297 (701)
T PLN02225 218 IDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGK 297 (701)
T ss_pred EcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCH
Confidence 999999999999999999998999999999999999877 110 00000
Q ss_pred -----------------------hHhhhcCCcceE-EEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018037 246 -----------------------SYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (362)
Q Consensus 246 -----------------------~~~~~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~ 294 (362)
-|.. +|+.++ .|||||++++.++++.+++. . +||+||+++|-+..
T Consensus 298 ~~~~~~~~~~~~~k~~~~~~~~~lFe~--lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 298 GMYEWAAKVDEYARGMVGPTGSTLFEE--LGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHHHHHHHHHHhhhccCCCccCcHHH--cCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 0111 233333 68999999999999998875 2 49999999998876
No 45
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.71 E-value=5.2e-17 Score=148.63 Aligned_cols=120 Identities=25% Similarity=0.249 Sum_probs=94.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
++.|+||+++|.|+|+++|. +++.|||+.|||++++. ..| |.+|++++||+++||.||+ |++.....+
T Consensus 54 ~~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~ 127 (202)
T cd02006 54 GQAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM-IEE-LAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMD 127 (202)
T ss_pred CCccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc-HHH-HHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCc
Confidence 35699999999999999986 68899999999998874 455 8999999999877666665 886432110
Q ss_pred --------c-------cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018037 241 --------A-------AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (362)
Q Consensus 241 --------~-------~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~ 294 (362)
. ...+||.+ +++|+++.+|+ ++.++.+++++|++.+++ ++|+|||+.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 128 YQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred cccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEecccc
Confidence 0 01368887 45999999996 788999999999876554 89999999985543
No 46
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.71 E-value=9.2e-17 Score=143.54 Aligned_cols=110 Identities=25% Similarity=0.313 Sum_probs=88.9
Q ss_pred ccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc--------
Q 018037 170 GIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-------- 240 (362)
Q Consensus 170 g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~-------- 240 (362)
|.||+++|.|+|+++|. +++.+|+++|||+++++. ++|.+|+.+++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 99999999999999986 578999999999998873 459999999999988888776 887542211
Q ss_pred ---------ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 241 ---------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 241 ---------~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
....+||.+. ++|+++.+|++ ++++.+++++|++. ++|+|||+.+
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~~---~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALAE---GGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 0123678774 59999999985 88988888888753 8999999863
No 47
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=1.5e-15 Score=156.07 Aligned_cols=150 Identities=21% Similarity=0.282 Sum_probs=120.0
Q ss_pred CCcccCCccccchhHHHHHHHHHHhhC-----CC-----CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCC
Q 018037 163 SGFYGGHGIVGAQIPLGCGLAFAQKYS-----KD-----ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (362)
Q Consensus 163 ~~~~~~~g~lG~~~p~A~G~A~A~k~~-----~~-----~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~ 231 (362)
.++..++|+||++++.|+|+|+|.++- ++ |..|+|++|||.+++|..+|+..+|..++|. +|++.++|+
T Consensus 109 ~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~ 188 (663)
T COG0021 109 PGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSND 188 (663)
T ss_pred CCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCC
Confidence 367788999999999999999998753 22 4589999999999999999999999999998 688899999
Q ss_pred cccccccccccCCchHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC-CCCC---CC
Q 018037 232 YGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM-SDPG---ST 304 (362)
Q Consensus 232 ~gi~t~~~~~~~~~~~~~~--g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~-~D~~---~~ 304 (362)
.+|....+... ..|..+| +||...+ .+||+|++++.+|+++|+.. +++|++|+|+|.-.+|-.. .+.. -.
T Consensus 189 IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~--~dkPtlI~~kTiIG~Gsp~kegt~~~HGa 265 (663)
T COG0021 189 ISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS--TDKPTLIIVKTIIGKGSPNKEGTHKVHGA 265 (663)
T ss_pred ceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc--CCCCeEEEEEeeeecCCCCcCCCccccCC
Confidence 99988776655 4566664 5888888 67999999999999998862 2799999999988888654 2211 11
Q ss_pred CCChhhHHhHh
Q 018037 305 YRTRDEISGVR 315 (362)
Q Consensus 305 YR~~~e~~~~~ 315 (362)
=-.++|++..+
T Consensus 266 pLg~~ev~~~k 276 (663)
T COG0021 266 PLGEEEVAAAK 276 (663)
T ss_pred CCCHHHHHHHH
Confidence 22456666644
No 48
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.70 E-value=9.6e-17 Score=141.18 Aligned_cols=114 Identities=25% Similarity=0.340 Sum_probs=90.0
Q ss_pred ccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccc-----
Q 018037 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEW----- 239 (362)
Q Consensus 166 ~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~----- 239 (362)
.++.|+||+++|.|+|++++. +++.+|+++|||++.+ ..++|++|+.+++|+++||.||++ ++.....
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 456799999999999999986 4789999999999987 457899999999999888888875 4433221
Q ss_pred -----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 240 -----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
.....++|.+. ++|+++++|+ +++++.++++++.+. ++|+|||+.|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~~~---~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEALAA---GGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 12234577774 5999999997 477888888777643 9999999975
No 49
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.68 E-value=1e-14 Score=157.04 Aligned_cols=223 Identities=22% Similarity=0.207 Sum_probs=148.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccccccCcchH-HHHHHHHhcCCC------CCEEEcCchhHHHHH
Q 018037 60 TPKELLSFFRQMATMRRMEIAADSLYKAKL----VRGFCHLYDGQE-AVAIGMEAGITK------KDSIITAYRDHCTFL 128 (362)
Q Consensus 60 s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~----i~gf~h~~~GqE-a~~vg~~~~l~~------~D~v~~~yR~h~~~l 128 (362)
.+.++.+-....++...++. ..+.+. +.|+.-.+.+-- -..++....|+. +|.|++ .+|+...
T Consensus 76 g~~~~e~~i~~~iR~~a~~m----v~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~ 149 (891)
T PRK09405 76 GDLELERRIRSYIRWNAAAM----VLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPG 149 (891)
T ss_pred CCHHHHHHHHHHHHHHHHHH----HHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHH
Confidence 35556655555554444433 223332 334333333332 233666667764 688775 3665522
Q ss_pred ------HcCC-CHHHHHHHHhCCCCCCCCCCCCcc--CCcc-CCCCcccCCccccchhHHHHHHHHHHhh-------CCC
Q 018037 129 ------GRGG-TLLEVFSELMGRKDGCSHGKGGSM--HFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKY-------SKD 191 (362)
Q Consensus 129 ------~rG~-~~~~~lael~g~~~g~~~Grggs~--H~~~-~~~~~~~~~g~lG~~~p~A~G~A~A~k~-------~~~ 191 (362)
..|. +.++ |..+ .+. +.|.|-+. |... |+ .+...+++||.+.+.|+|.|++.|| .+.
T Consensus 150 lYA~~~l~G~l~~e~-L~~f-R~~---~~g~gl~syPhp~~~p~-~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~ 223 (891)
T PRK09405 150 IYARAFLEGRLTEEQ-LDNF-RQE---VDGKGLSSYPHPWLMPD-FWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTS 223 (891)
T ss_pred HHHHHHHcCCCCHHH-HHHh-cCC---CCCCCCCCCCCcCCCCC-CeecCccccchhHHHHHHHHHhCccccccccccCC
Confidence 2354 3333 3222 222 12222233 3221 21 2345689999999999999999994 456
Q ss_pred CCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcccccccccccC-CchHhh--hcCCcceEEE--------
Q 018037 192 ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKV-------- 259 (362)
Q Consensus 192 ~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~~-~~~~~~--~g~gi~g~~V-------- 259 (362)
++.|+|++|||.++||+.|||+.+|+.++|. +||||++|...+..+...... ..++.+ +++|...+.|
T Consensus 224 ~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~ 303 (891)
T PRK09405 224 DQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDP 303 (891)
T ss_pred CceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchh
Confidence 7899999999999999999999999999998 689999999988777654211 234444 4577777888
Q ss_pred ------------------e-------------------------------------------CCCHHHHHHHHHHHHHHh
Q 018037 260 ------------------D-------------------------------------------GMDALAVKQACKFAKEHA 278 (362)
Q Consensus 260 ------------------d-------------------------------------------G~D~~av~~a~~~A~~~a 278 (362)
| |||+.+|++|++.|.+.
T Consensus 304 l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~- 382 (891)
T PRK09405 304 LLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH- 382 (891)
T ss_pred hhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC-
Confidence 4 99999999999988863
Q ss_pred ccCCCEEEEEEEecCCCC
Q 018037 279 LKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 279 r~~gP~lIe~~tyR~~GH 296 (362)
+++|++|.++|.+.+|.
T Consensus 383 -~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 383 -KGQPTVILAKTIKGYGM 399 (891)
T ss_pred -CCCCEEEEEeceecCCC
Confidence 37899999999999997
No 50
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.68 E-value=3.2e-16 Score=140.61 Aligned_cols=115 Identities=25% Similarity=0.323 Sum_probs=90.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|.||+++|+|+|+++|. +++.+|+++|||++.++ +.| |.+++.+++|+++||.||+ |++.....
T Consensus 48 ~~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~ 121 (178)
T cd02014 48 GLLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQP 121 (178)
T ss_pred CCCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCC
Confidence 35699999999999999885 67899999999999986 677 8889999999988877775 88743211
Q ss_pred ---cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. ++|+++.+++ +++++.++++++++. ++|+|||+.+.+
T Consensus 122 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~~---~~p~liev~~~~ 174 (178)
T cd02014 122 EFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALAA---DGPVVIDVVTDP 174 (178)
T ss_pred ceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 01124688774 5999999997 677888877777653 899999999854
No 51
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.67 E-value=6.4e-16 Score=138.74 Aligned_cols=116 Identities=19% Similarity=0.117 Sum_probs=88.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccccc----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWRA---- 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~~---- 241 (362)
...|.||+++|.|+|+++|. +++.||++.|||++.+.. .++|.+|+.+++|+++||.|| .|++...+...
T Consensus 48 ~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 48 DTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred cccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 45799999999999999996 578899999999987532 466999999999987555555 57764322210
Q ss_pred -----cCCchHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 242 -----AKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 242 -----~~~~~~~~~--g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
...+||.+. ++|+++++| ++.|..++.+++++|++. ++|+||++..
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~---~gp~lI~v~~ 176 (178)
T cd02008 123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAV---PGVSVIIAKR 176 (178)
T ss_pred cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 023578774 599999999 677888777888888753 8999999864
No 52
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6e-16 Score=157.40 Aligned_cols=131 Identities=24% Similarity=0.332 Sum_probs=112.7
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCC-CCeEEEEeCCcccccchHHHHHHHHHhCCCCe-EEEEEcCCcccccccccc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLPA-ILVCENNHYGMGTAEWRA 241 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~-~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPv-IfVv~NN~~gi~t~~~~~ 241 (362)
++..++|++|++++.|+|+|++.|+.+. +..|+|++|||++++|+.|||+++|..|+|.. |+|.+||+.+++++....
T Consensus 112 ~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~ 191 (632)
T KOG0523|consen 112 GVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLG 191 (632)
T ss_pred CceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCccc
Confidence 3456789999999999999999999888 89999999999999999999999999999995 677888889999888776
Q ss_pred cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018037 242 AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 242 ~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GH 296 (362)
...+-+..| +||+..+.|||+|++++.+++.+|+.- +++|++|-+.|+...|-
T Consensus 192 ~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~--k~kpt~i~~~t~~g~G~ 246 (632)
T KOG0523|consen 192 FDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSV--KGKPTAIKATTFIGRGS 246 (632)
T ss_pred ccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhc--cCCceeeeeeeeeecCc
Confidence 644333323 489999999999999999999888731 38999999999998874
No 53
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.67 E-value=3.5e-16 Score=140.46 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=90.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEE-cCCcccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~-NN~~gi~t~~~------ 239 (362)
++.|.||+++|.|+|+++|. +++.||++.|||++.+. ..| |.+|+++++|+|+||. |++|++.....
T Consensus 45 ~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~-~~e-L~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~ 118 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN-SQE-LETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGR 118 (177)
T ss_pred CCChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH-HHH-HHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 46789999999999999985 68899999999998764 344 8899999999876655 55588643211
Q ss_pred ---cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+ +++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 119 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~ 171 (177)
T cd02010 119 DSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALAA---DGVHVIDCPVDY 171 (177)
T ss_pred cccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecc
Confidence 0112458877 46999999996 789999999988764 999999999854
No 54
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.66 E-value=7.4e-16 Score=141.44 Aligned_cols=116 Identities=20% Similarity=0.162 Sum_probs=90.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEE-EEEcCCccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAIL-VCENNHYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIf-Vv~NN~~gi~t~~~~----- 240 (362)
++.|.||+++|.|+|+++|. +++.||++.|||++.++ ..| |.+|+++++|+++ |++||+|++......
T Consensus 45 ~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 118 (205)
T cd02003 45 YGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLML-HSE-IVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSG 118 (205)
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhcc-HHH-HHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCc
Confidence 45799999999999999985 68899999999998874 444 8899999999865 555556886321110
Q ss_pred -------c-----------cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 241 -------A-----------AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 241 -------~-----------~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
. ...+||.+. ++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIeV~v~~~ 186 (205)
T cd02003 119 SFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKAS---DRTTVIVIKTDPK 186 (205)
T ss_pred cccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeecc
Confidence 0 123688774 5999999995 899999999988753 9999999999663
No 55
>PRK06163 hypothetical protein; Provisional
Probab=99.66 E-value=1e-15 Score=140.39 Aligned_cols=130 Identities=21% Similarity=0.229 Sum_probs=97.5
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhC-CCCeEEEEEcC-Cccccccccc-ccCC
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVCENN-HYGMGTAEWR-AAKS 244 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~-~LPvIfVv~NN-~~gi~t~~~~-~~~~ 244 (362)
..|.||+++|+|+|+++|. +++.|||++|||++++. ..| |.+++.+ ++|+++||.|| +|++...+.. ....
T Consensus 55 ~~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~ 128 (202)
T PRK06163 55 MLGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ-LGA-LGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQT 128 (202)
T ss_pred eecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH-HHH-HHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCC
Confidence 3689999999999999986 68899999999998763 344 8888876 78988777766 5886432211 1134
Q ss_pred chHhh--hcCCcc-eEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCChhhHHh
Q 018037 245 PSYYK--RGDYVP-GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (362)
Q Consensus 245 ~~~~~--~g~gi~-g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~ 313 (362)
+||.+ +++|++ +.+|+ ++.++..+++++++. ++|+|||+.+.+. .+.+...|+|.|++.
T Consensus 129 ~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~~-----~~~~~~~~~~~~~~~ 190 (202)
T PRK06163 129 VDVVAIARGAGLENSHWAA--DEAHFEALVDQALSG---PGPSFIAVRIDDK-----PGVGTTERDPAQIRE 190 (202)
T ss_pred CCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecCC-----CCCCCCCCCHHHHHH
Confidence 78887 459998 67885 888999999988754 9999999998643 233344677777664
No 56
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.65 E-value=1.4e-15 Score=138.04 Aligned_cols=116 Identities=18% Similarity=0.107 Sum_probs=88.7
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCC-CeEEEEEcCC-cccccccccccCCch
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSPS 246 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~L-PvIfVv~NN~-~gi~t~~~~~~~~~~ 246 (362)
+|+||+++|.|+|+++|. +++.||+++|||++.+. .++|.+++.+++ |+++||.||+ |++...+......+|
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 499999999999999986 67889999999998763 345899999997 5766655555 776432222223468
Q ss_pred Hhhh--cCCcce-EEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018037 247 YYKR--GDYVPG-LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (362)
Q Consensus 247 ~~~~--g~gi~g-~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~G 295 (362)
|.+. ++|+++ .+|+ ++.++.+++++|++. ++|+|||+.+.+..+
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~~~~~~~ 167 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALAA---DGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHhC---CCCEEEEEEecCCCC
Confidence 8874 599987 4786 788999999888753 899999999976544
No 57
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.64 E-value=2.9e-15 Score=134.87 Aligned_cols=114 Identities=24% Similarity=0.244 Sum_probs=87.9
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCC-CeE-EEEEcCCccccccccccc-CCc
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAI-LVCENNHYGMGTAEWRAA-KSP 245 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~L-PvI-fVv~NN~~gi~t~~~~~~-~~~ 245 (362)
.|+||+++|.|+|+++|.+ +.|||++|||++.++ . .+|.+++.+++ |++ +|++||+|++...+.... ..+
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~-~-~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN-L-GALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC-H-HHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 7999999999999999863 789999999998653 2 34778889985 665 556777788764332222 256
Q ss_pred hHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018037 246 SYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (362)
Q Consensus 246 ~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~G 295 (362)
+|.+. ++|+++.+|+| +++++.+++++++ ++|+|||+.+.+..+
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~-----~gp~lIev~~~~~~~ 159 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL-----DGPSFIHVKIKPGNT 159 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc-----CCCEEEEEEEcCCCC
Confidence 88874 59999999987 7888888777765 789999999966443
No 58
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.64 E-value=3.5e-16 Score=136.67 Aligned_cols=113 Identities=30% Similarity=0.478 Sum_probs=89.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
.+.+.||+++|.|+|+++|. +++.||+++|||++.+. +.| |.+++++++|+++||.||+ |++......
T Consensus 25 ~~~g~mG~~~~~aiGa~~a~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~ 98 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALAR----PDRPVVAITGDGSFLMS-LQE-LATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGG 98 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH-GGG-HHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTST
T ss_pred CCccccCCHHHhhhHHHhhc----CcceeEEecCCcceeec-cch-hHHHhhccceEEEEEEeCCcceEeccccccCcCc
Confidence 46799999999999999984 78999999999998875 454 9999999999876666665 776433211
Q ss_pred -----c---cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 241 -----A---AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 241 -----~---~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
. ...+||.+ +++|+++.+|+..|++++.+++++|++. +||+|||+
T Consensus 99 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~---~gp~vIeV 153 (153)
T PF02775_consen 99 RFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALES---GGPAVIEV 153 (153)
T ss_dssp CHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHS---SSEEEEEE
T ss_pred ccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhC---CCcEEEEc
Confidence 1 33467877 4599999999877779999999999854 99999996
No 59
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.64 E-value=1.5e-15 Score=137.16 Aligned_cols=114 Identities=28% Similarity=0.425 Sum_probs=88.3
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc------cc
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------~~ 240 (362)
+.|.||+++|.|+|+++|. ++++||+++|||++.+. +.| |.+|+++++|+++||.||+ |++.... ..
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~~e-L~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~ 121 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-IQE-LATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGR 121 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCc
Confidence 4689999999999999986 67899999999998874 555 9999999999877666665 6653211 00
Q ss_pred -----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+ +++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 122 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~ 175 (186)
T cd02015 122 YSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALAS---DGPVLLDVLVDP 175 (186)
T ss_pred eeeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 112468877 45999999997 477887777777653 899999999965
No 60
>PRK05261 putative phosphoketolase; Provisional
Probab=99.63 E-value=5e-15 Score=157.70 Aligned_cols=200 Identities=19% Similarity=0.162 Sum_probs=144.9
Q ss_pred ccccccccCcchHHHHHHHHhcCCCC--CEEEcCchhHHHHHH------cC--------CCHHHH-HHHHhCCCCCCCCC
Q 018037 89 LVRGFCHLYDGQEAVAIGMEAGITKK--DSIITAYRDHCTFLG------RG--------GTLLEV-FSELMGRKDGCSHG 151 (362)
Q Consensus 89 ~i~gf~h~~~GqEa~~vg~~~~l~~~--D~v~~~yR~h~~~l~------rG--------~~~~~~-lael~g~~~g~~~G 151 (362)
+..|++-.+.|+-.+-+.+...+++. |.++-.--|||..+. -| ++..+. |..+|-+- +. .|
T Consensus 47 r~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf-s~-pg 124 (785)
T PRK05261 47 RLLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF-SF-PG 124 (785)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc-cC-CC
Confidence 45687777899998877777777764 644443346765331 25 333221 33233211 11 11
Q ss_pred CCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchH---HHHHHHHHhCCCC-eEEEE
Q 018037 152 KGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVC 227 (362)
Q Consensus 152 rggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~---~Ealn~A~~~~LP-vIfVv 227 (362)
|.+.|......++...+|.+|++++.|+|+|+. +++.+++|++|||++++|.+ |++.+++.-.++. |+.|+
T Consensus 125 -g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIl 199 (785)
T PRK05261 125 -GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPIL 199 (785)
T ss_pred -CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEE
Confidence 345787655568888999999999999999975 47889999999999999984 8877777777777 56788
Q ss_pred EcCCccccccccccc-CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHh-----------cc----CCCE--EEE
Q 018037 228 ENNHYGMGTAEWRAA-KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHA-----------LK----NGPM--ILE 287 (362)
Q Consensus 228 ~NN~~gi~t~~~~~~-~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~a-----------r~----~gP~--lIe 287 (362)
++|+|+|++++.... ...++.+ ++||++.+.|||+|+.++++++++|++.+ |. .+|. +|.
T Consensus 200 d~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii 279 (785)
T PRK05261 200 HLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIV 279 (785)
T ss_pred EecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEE
Confidence 899999999988653 3356666 46999999999999999998877666543 32 3788 999
Q ss_pred EEEecCCC
Q 018037 288 MDTYRYHG 295 (362)
Q Consensus 288 ~~tyR~~G 295 (362)
++|.+.+|
T Consensus 280 ~rT~kG~g 287 (785)
T PRK05261 280 LRTPKGWT 287 (785)
T ss_pred EECCccCC
Confidence 99999877
No 61
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.62 E-value=2.1e-15 Score=133.07 Aligned_cols=111 Identities=20% Similarity=0.144 Sum_probs=87.0
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhC-CCCeEEEE-EcCCcccccccccccCCch
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVC-ENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~-~LPvIfVv-~NN~~gi~t~~~~~~~~~~ 246 (362)
.|+||+++|.|+|+++|. + +.|||+.|||++.+. ..| |.+++.+ ++|+++|| +|+.|++...+......+|
T Consensus 41 ~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~-~~e-l~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMN-PGV-LLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhc-ccH-HHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2 789999999998653 344 7888888 59987666 5555886432222223578
Q ss_pred Hhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 247 YYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 247 ~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
|.+. ++|+++.+|+ +++++.+++++|++. ++|++||+.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLAT---TGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHhC---CCCEEEEEEec
Confidence 8874 5999999985 799999999998863 89999999874
No 62
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.62 E-value=3.6e-15 Score=134.63 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=90.7
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeE-EEEEcCCccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAI-LVCENNHYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvI-fVv~NN~~gi~t~~~~----- 240 (362)
+..|.||+++|.|+|+++|. +++.||+++|||++.+ .++| |.+++.+++|++ +|++||+|++......
T Consensus 47 ~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~ 120 (183)
T cd02005 47 PLWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASY 120 (183)
T ss_pred cchhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCc
Confidence 45699999999999999986 5789999999999976 4777 778999999975 5566667886432211
Q ss_pred -ccCCchHhhh--cCC----cceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -AAKSPSYYKR--GDY----VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -~~~~~~~~~~--g~g----i~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+. ++| +++++|+ ++.++.++++++++ +.++|+|||+.+.+
T Consensus 121 ~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~--~~~~p~liev~~~~ 175 (183)
T cd02005 121 NDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF--NRDKLSLIEVILPK 175 (183)
T ss_pred ccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh--cCCCcEEEEEEcCc
Confidence 1124678774 588 7888885 79999999999887 23899999999865
No 63
>PRK07524 hypothetical protein; Provisional
Probab=99.62 E-value=2e-15 Score=156.98 Aligned_cols=118 Identities=27% Similarity=0.323 Sum_probs=95.7
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccc-c------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTA-E------ 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~-~------ 238 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++++. +.| |.+|++++||+++||.|| .|++... +
T Consensus 404 ~~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~ 477 (535)
T PRK07524 404 TGYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIE 477 (535)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCC
Confidence 34699999999999999985 78899999999999864 666 999999999998777776 6885421 1
Q ss_pred --ccccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018037 239 --WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (362)
Q Consensus 239 --~~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~G 295 (362)
......+||.+. ++|+++.+|+ +++++.++++++++. ++|+|||+.++|+.+
T Consensus 478 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~~~~ 533 (535)
T PRK07524 478 PVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFAR---PGPTLIEVDQACWFA 533 (535)
T ss_pred ccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEECCcccc
Confidence 111235688874 5999999996 888998888888764 999999999999876
No 64
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.61 E-value=6.9e-15 Score=132.70 Aligned_cols=111 Identities=24% Similarity=0.318 Sum_probs=85.7
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCC-CCeEEEEEcCC-ccccccccccc-CCc
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-LPAILVCENNH-YGMGTAEWRAA-KSP 245 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~-LPvIfVv~NN~-~gi~t~~~~~~-~~~ 245 (362)
.|+||+++|.|+|+++|. ++.|||+.|||++.++ . ++|.+++.++ +|+++||.||+ |++...+.... ..+
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~-~-~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMN-L-GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhh-h-hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 799999999999999984 6789999999998875 3 4488999999 59887776665 88654222111 256
Q ss_pred hHhh--hcCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 246 SYYK--RGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 246 ~~~~--~g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
||.+ +++|+++.+ |+ ++.++.++++ +++ .++|+|||+.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~---~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA---MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc---CCCCEEEEEEeCC
Confidence 8887 459999988 74 7888888885 553 2899999999854
No 65
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=4e-15 Score=155.05 Aligned_cols=116 Identities=25% Similarity=0.352 Sum_probs=94.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccccC--
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAK-- 243 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~~-- 243 (362)
++.|+||+++|.|+|+++|. +++.|||+.|||++++. ..| |.+|+++++|+++||.||+ ||+.........
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~-~qE-L~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN-GQE-LETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc-HHH-HHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 57899999999999999986 78999999999999874 555 9999999999988777776 787544322111
Q ss_pred -------Cch-Hhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 244 -------SPS-YYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 244 -------~~~-~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
.+. |.+ .+||+++++|+ +++++.+++++|++. ++|+|||+.+.+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~~---~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALAS---DGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecCc
Confidence 112 766 45999999997 899999999999875 9999999999775
No 66
>PRK12474 hypothetical protein; Provisional
Probab=99.58 E-value=9.4e-15 Score=151.44 Aligned_cols=113 Identities=24% Similarity=0.259 Sum_probs=89.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc-c-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-W----- 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~-~----- 239 (362)
+..|+||+++|.|+|+++|. +++.|||+.|||++++. .+| |.+|++++||+++||.||+ |++.... .
T Consensus 386 ~~~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~-~qE-L~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~ 459 (518)
T PRK12474 386 LTGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT-MQA-LWTMARENLDVTVVIFANRSYAILNGELQRVGAQ 459 (518)
T ss_pred cCCCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch-HHH-HHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCC
Confidence 34599999999999999996 78899999999999874 455 9999999999876666665 8864211 0
Q ss_pred ---c--------ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 240 ---R--------AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 240 ---~--------~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
+ ....+||.+ ++||+++.+|+ +++++.+++++|++. ++|+|||+.+
T Consensus 460 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~~---~~p~liev~~ 518 (518)
T PRK12474 460 GAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMAQ---RGPRLIEAMI 518 (518)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHcC---CCCEEEEEEC
Confidence 0 011247887 45999999996 788999999888753 9999999964
No 67
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.58 E-value=7.9e-15 Score=154.28 Aligned_cols=118 Identities=26% Similarity=0.243 Sum_probs=93.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|+++++|+++||.||+ ||+......
T Consensus 415 ~~~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~ 488 (588)
T TIGR01504 415 GQAGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-IEE-LAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMD 488 (588)
T ss_pred CccccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccc
Confidence 34699999999999999986 78899999999999885 455 9999999999876655554 886321110
Q ss_pred -----cc----------CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 241 -----AA----------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 241 -----~~----------~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
.. ..+||.+. ++|+++.+|+ +++++.+++++|++.+.+ ++|+|||+.+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 489 YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred ccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13688874 5999999995 789999999999875544 999999999854
No 68
>PRK06154 hypothetical protein; Provisional
Probab=99.58 E-value=8.7e-15 Score=153.27 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=93.2
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc-----c-
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----R- 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~-----~- 240 (362)
..|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.||+ |++..... .
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~ 502 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT-GMD-FETAVRERIPILTILLNNFSMGGYDKVMPVSTTKY 502 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECCccceeehhhhhhcCcc
Confidence 4689999999999999986 68899999999999874 455 9999999999887666665 88532211 0
Q ss_pred --ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 --AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 --~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+. +||+++.+|+ +++++.+++++|+++.+.++|+|||+.+.+
T Consensus 503 ~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~~~~p~lIev~v~~ 556 (565)
T PRK06154 503 RATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVKEGTPALLEVITSE 556 (565)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhccCCCeEEEEEEeCh
Confidence 0123688874 5999999996 799999999999875445889999998844
No 69
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.58 E-value=6.2e-15 Score=132.03 Aligned_cols=111 Identities=21% Similarity=0.188 Sum_probs=85.8
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~------ 240 (362)
+.+.||+++|.|+|+++|. ++.||+++|||++.+. ..| |.+|+++++|+++||.|| .|++......
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~-~~e-L~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~ 121 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-LNG-LLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDE 121 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh-HHH-HHhccccCCCeEEEEEECCCCchheeccCCcccch
Confidence 4588999999999999984 5789999999998874 444 889999999987655555 4775321110
Q ss_pred ---cc---CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 241 ---AA---KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 241 ---~~---~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
.. ..+||.+ +++|+++.+|+ +++++.+++++|++. ++|+|||+.+
T Consensus 122 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~v 174 (175)
T cd02009 122 FERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALAQ---DGPHVIEVKT 174 (175)
T ss_pred hhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 11 2468887 45999999996 789999999888753 8999999975
No 70
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.57 E-value=2.3e-14 Score=130.55 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=85.7
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-c----
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-A---- 241 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~-~---- 241 (362)
.+.||+++|+|+|+++|. +++.||++.|||+ ++++ +.| |.+|+++++|+++||.||+ |++...+.. .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~-~~e-L~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG-GNH-FIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc-HHH-HHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 488999999999999985 7899999999999 5554 455 8999999999987666665 786542211 0
Q ss_pred -----------cCCchHhh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 242 -----------AKSPSYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 242 -----------~~~~~~~~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
...+||.+ +++|++++ ++.-.++.++.+++++|++. ++|+|||+.+
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~~---~gp~vIev~~ 183 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQH---KGFSFVEVLS 183 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHhc---CCCEEEEEEC
Confidence 01257776 45898885 22335899999999998864 9999999975
No 71
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.56 E-value=1.2e-14 Score=152.29 Aligned_cols=115 Identities=26% Similarity=0.387 Sum_probs=91.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++++. ++| |.+|++++||++|||.||+ |++.....
T Consensus 419 ~~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~ 492 (570)
T PRK06725 419 GGLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYEN 492 (570)
T ss_pred CCcccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCC
Confidence 45599999999999999985 68899999999999764 666 9999999999988777776 67532111
Q ss_pred ----cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ----RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ----~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+ ++||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~id~ 546 (570)
T PRK06725 493 RLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFAH---EGPVVVDFCVEE 546 (570)
T ss_pred ccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 0112468887 45999999995 888988888888754 999999999854
No 72
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.56 E-value=1.6e-14 Score=151.34 Aligned_cols=118 Identities=23% Similarity=0.212 Sum_probs=95.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccc-------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE------- 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~------- 238 (362)
++.|.||+++|.|+|+++|. +++.||+++|||+++++...++|++|+++++|+++||.|| +|++....
T Consensus 427 ~~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~ 502 (569)
T PRK08327 427 GSAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPE 502 (569)
T ss_pred CCCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcc
Confidence 34689999999999999874 7899999999999988754457999999999998777777 58864211
Q ss_pred ----------cccc-CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 239 ----------WRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 239 ----------~~~~-~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
.... ..+||.+. ++|+++.+|+ +++++.+++++|++..++ +||+|||+.+
T Consensus 503 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 503 GYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred cccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0011 34678774 5999999996 899999999999987777 7899999986
No 73
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.55 E-value=2.2e-14 Score=150.58 Aligned_cols=116 Identities=27% Similarity=0.317 Sum_probs=92.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc------c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------~ 239 (362)
+..|+||+++|.|+|+++|. +++.|||++|||+++++ +.| |.+|+++++|+++||.||+ |++.... .
T Consensus 405 ~~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~ 478 (578)
T PRK06546 405 FRHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLP 478 (578)
T ss_pred CCcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCccccHHHHHHhcCCC
Confidence 34689999999999999986 67899999999999874 555 8999999999987777776 6764210 0
Q ss_pred ---cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 240 ---~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
.....+||.+. ++|+++.+|+ +++++.+++++|++. +||+|||+.+.+.
T Consensus 479 ~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIev~~~~~ 532 (578)
T PRK06546 479 DFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFAH---PGPALVDVVTDPN 532 (578)
T ss_pred cccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCCC
Confidence 11235688874 5999999996 799999999988764 9999999998543
No 74
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.55 E-value=2.4e-14 Score=134.32 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=91.0
Q ss_pred ccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc---
Q 018037 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR--- 240 (362)
Q Consensus 166 ~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~--- 240 (362)
++..++||+++|.|+|++++. +++.||++.|||++ .++ +.| |.+|+++++|+++||.||+ ||+...+..
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a~----p~r~VV~i~GDG~~~~m~-~~e-L~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGRG----KDITVVAFAGDGGTADIG-FQA-LSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhccC----CCCeEEEEEcCchHHhhH-HHH-HHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 445589999999999987664 68899999999995 565 455 9999999999988888877 785321110
Q ss_pred ------------------ccCCchHhh--hcCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018037 241 ------------------AAKSPSYYK--RGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 241 ------------------~~~~~~~~~--~g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GH 296 (362)
....+||.+ +++|++++. +.-.+++++.+++++|++. ++|+|||+.+.=...|
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~---~gP~lIev~~~C~~~~ 205 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSI---EGPAYIHILSPCPTGW 205 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCC
Confidence 012357877 459998863 4556899999999998875 8999999986443333
No 75
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.55 E-value=1.4e-14 Score=152.24 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=93.7
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~------ 240 (362)
+.|+||+++|.|+|+++|. +++.||+++|||+++++ ..| |.+|+++++|+++||.|| +|++......
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 5699999999999999985 67899999999999886 566 889999999987666555 6886321110
Q ss_pred ----cc-CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 241 ----~~-~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
.. ..+||.+. ++|+++++|+ +++++.++++++++..++++|+|||+.+.+-.
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQNEGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCCCcEEEEEEecccc
Confidence 01 23588874 5999999996 78899999999987543379999999997644
No 76
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.55 E-value=1.9e-14 Score=150.98 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=94.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|++++||+++||.||+ |++.....
T Consensus 418 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~ 491 (574)
T PRK07979 418 GGLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN-IQE-LSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSG 491 (574)
T ss_pred CCccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCC
Confidence 45699999999999999986 67899999999999874 445 9999999999877766665 77632110
Q ss_pred ---cc--cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---RA--AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~~--~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ...+||.+ ++||+++.+|+ +++++.+++++|++.++.++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 492 RHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred ccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccCCCCcEEEEEEECC
Confidence 01 12468887 45999999995 789999999999886545899999999965
No 77
>PRK08266 hypothetical protein; Provisional
Probab=99.55 E-value=2.4e-14 Score=149.09 Aligned_cols=118 Identities=24% Similarity=0.347 Sum_probs=93.2
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~------ 240 (362)
..|+||+++|.|+|++++. +++.|||++|||+++++ + ++|.+|++++||+++||.|| +|++.....+
T Consensus 400 ~~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~-~-~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~ 473 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG-V-QELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGR 473 (542)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCC
Confidence 4699999999999999875 68899999999999986 4 55999999999988776666 5886432111
Q ss_pred ----ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018037 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 241 ----~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GH 296 (362)
....+||... +||+++.+|+ +++++.++++++++. ++|+|||+.++|...+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i~~~~~~ 530 (542)
T PRK08266 474 VVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALAH---GGPVLIEVPVPRGSEA 530 (542)
T ss_pred cccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHhC---CCcEEEEEEecCCCCc
Confidence 0124688874 5999999997 577888888887753 8999999999887554
No 78
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.55 E-value=2e-14 Score=151.41 Aligned_cols=115 Identities=20% Similarity=0.363 Sum_probs=92.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||++.|||++++. +.| |.+|++++||+++||.||+ |++.....
T Consensus 427 ~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~ 500 (595)
T PRK09107 427 GGLGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC-IQE-MSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGN 500 (595)
T ss_pred CCchhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCC
Confidence 34599999999999999986 78899999999999874 455 9999999999987777776 77532110
Q ss_pred ---cc--cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---RA--AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~~--~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ...+||.+ ++||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 501 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 555 (595)
T PRK09107 501 RLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMIDV---DKPVIFDCRVAN 555 (595)
T ss_pred ccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 01 12368887 45999999995 788999999888864 899999999965
No 79
>PRK07586 hypothetical protein; Validated
Probab=99.54 E-value=3e-14 Score=147.38 Aligned_cols=113 Identities=27% Similarity=0.282 Sum_probs=87.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
+..|.||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.|| +|++.....
T Consensus 382 ~~~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~E-L~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~ 455 (514)
T PRK07586 382 LTGGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT-IQA-LWTQARENLDVTTVIFANRAYAILRGELARVGAG 455 (514)
T ss_pred cCCcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH-HHH-HHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCC
Confidence 33589999999999999986 68899999999999874 454 999999999987665555 588632100
Q ss_pred ----------c-ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 240 ----------R-AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 240 ----------~-~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
. ....+||.+ ++||+++.+|+ ++.++.+++++|++. ++|+|||+.+
T Consensus 456 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~~---~~p~liev~~ 514 (514)
T PRK07586 456 NPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALAE---PGPHLIEAVV 514 (514)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHcC---CCCEEEEEEC
Confidence 0 012358887 45999999996 788998888888753 8999999963
No 80
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.54 E-value=4.9e-14 Score=146.41 Aligned_cols=113 Identities=28% Similarity=0.342 Sum_probs=89.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
+..|.||+++|.|+|+++|. +++.|||++|||+++++ . ++|++|+.+++|+++||.||+ |++.....
T Consensus 404 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~ 477 (530)
T PRK07092 404 MASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS-I-QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVR 477 (530)
T ss_pred cCCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh-H-HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCC
Confidence 44689999999999999985 67899999999999986 3 569999999999988887777 88642211
Q ss_pred ----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 240 ----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
......||.+. +||+++.+|+ ++.++.+++++|.+. ++|+|||+.+
T Consensus 478 ~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~~ 529 (530)
T PRK07092 478 DVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALAA---DGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEc
Confidence 11134678774 5999999997 577887777776642 8999999976
No 81
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.54 E-value=1.2e-13 Score=133.76 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=95.0
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
..|.+|.++|+|+|+++|. +++.||++.|||++ ..| ..| |.+|+++++|+++||.||+ ||+...+..
T Consensus 68 ~~g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg-~~e-L~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~ 141 (301)
T PRK05778 68 LHTLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG-GGH-FIHAGRRNIDITVIVENNGIYGLTKGQASPTTPE 141 (301)
T ss_pred cchhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc-HHH-HHHHHHHCCCcEEEEEeCchhhcccCcccCCcCC
Confidence 3488999999999999986 78899999999996 465 344 8899999999887777665 787543211
Q ss_pred --c---------cCCchHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE--ecCCCCCCCCCCCC
Q 018037 241 --A---------AKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT--YRYHGHSMSDPGST 304 (362)
Q Consensus 241 --~---------~~~~~~~~~--g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t--yR~~GHs~~D~~~~ 304 (362)
. ...+||... ++|+.++ ++.-.++.++.+++++|+++ +||+|||+.+ .-+++.. +.
T Consensus 142 g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~~---~GpalIeV~~~C~~~~~~~-----~~ 213 (301)
T PRK05778 142 GSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAISH---KGFAFIDVLSPCVTFNGRN-----TS 213 (301)
T ss_pred CcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCCcC-----Cc
Confidence 0 013477764 5888876 33345899999999999865 9999999874 2333322 23
Q ss_pred CCChhhHHhH
Q 018037 305 YRTRDEISGV 314 (362)
Q Consensus 305 YR~~~e~~~~ 314 (362)
.+++.++.+|
T Consensus 214 ~~~~~~~~~~ 223 (301)
T PRK05778 214 TKSPAYMREY 223 (301)
T ss_pred ccCHHHHHHH
Confidence 4556666666
No 82
>PRK07064 hypothetical protein; Provisional
Probab=99.53 E-value=4e-14 Score=147.38 Aligned_cols=118 Identities=23% Similarity=0.271 Sum_probs=91.4
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc---
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW--- 239 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~--- 239 (362)
.+.++.|.||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.|| +|++.....
T Consensus 399 ~~~~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~ 472 (544)
T PRK07064 399 NVHALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN-LGE-LATAVQENANMVIVLMNDGGYGVIRNIQDAQ 472 (544)
T ss_pred eeccCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEeCChhHHHHHHHHHh
Confidence 34444589999999999999985 68899999999999874 454 999999999987665555 588643111
Q ss_pred -------cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -------RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -------~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+ ++||+++.+|+ +++++.+++++|++. ++|+|||+.++.
T Consensus 473 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIeV~~~~ 529 (544)
T PRK07064 473 YGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALAK---EGPVLVEVDMLS 529 (544)
T ss_pred cCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHcC---CCCEEEEEEccc
Confidence 0112468887 45999999996 788999999888753 899999999863
No 83
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.53 E-value=3.8e-14 Score=147.46 Aligned_cols=115 Identities=22% Similarity=0.307 Sum_probs=90.7
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccc-----cc
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-----WR 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~-----~~ 240 (362)
++.|+||+++|.|+|+++|. +++.||++.|||++++. ..| |.+|++++||+++||.|| +|++.... .+
T Consensus 405 ~~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~ 478 (539)
T TIGR02418 405 NGMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS-SME-LETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQR 478 (539)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 35689999999999999986 67899999999999874 555 999999999987655555 58864211 11
Q ss_pred ----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+ ++||+++.+|+ ++.++.+++++|++. ++|+|||+.+.+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~p~lIev~v~~ 531 (539)
T TIGR02418 479 SSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAMEV---EGPVVVDIPVDY 531 (539)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 112468887 46999999996 788999999888764 899999999865
No 84
>PRK05858 hypothetical protein; Provisional
Probab=99.53 E-value=3.7e-14 Score=147.77 Aligned_cols=114 Identities=20% Similarity=0.193 Sum_probs=91.1
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccc-cc-----
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-WR----- 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~-~~----- 240 (362)
+.|+||+++|.|+|+++|. +++.||++.|||++++. ++| |.+|+++++|+++||.|| .|++.... ..
T Consensus 405 ~~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 478 (542)
T PRK05858 405 PFGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS-LMD-VDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYD 478 (542)
T ss_pred CccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc-HHH-HHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCc
Confidence 4689999999999999986 78899999999998874 566 999999999987666655 58863211 11
Q ss_pred ----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+ .+||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~~~~ 531 (542)
T PRK05858 479 VAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFAS---GVPYLVNVLTDP 531 (542)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCcEEEEEEECC
Confidence 113468887 45999999996 788999999988763 899999999954
No 85
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.52 E-value=3.4e-14 Score=149.49 Aligned_cols=118 Identities=25% Similarity=0.243 Sum_probs=93.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc-----c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----R 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~-----~ 240 (362)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.||+ ||+..... .
T Consensus 416 ~~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~ 489 (591)
T PRK11269 416 GQAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL-IEE-LAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMD 489 (591)
T ss_pred CccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC-HHH-HHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccC
Confidence 45699999999999999985 67899999999999874 555 9999999999987777776 77532110 0
Q ss_pred ---cc------------CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 241 ---AA------------KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 241 ---~~------------~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
.. ..+||.+ ++||+++.+|+ +++++.+++++|++...+ +||+|||+.+.+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 490 YCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred ccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 1368887 45999999995 899999999999875544 899999999864
No 86
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.52 E-value=3.8e-14 Score=149.85 Aligned_cols=115 Identities=24% Similarity=0.332 Sum_probs=91.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.||+ |++.....+
T Consensus 431 ~~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~ 504 (616)
T PRK07418 431 AGLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN-IQE-LGTLAQYGINVKTVIINNGWQGMVRQWQESFYGE 504 (616)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45699999999999999986 78899999999999874 555 9999999999987766665 776332111
Q ss_pred ---c--c--CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ---A--A--KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ---~--~--~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. . ..+||.+. ++|+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 505 ~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 560 (616)
T PRK07418 505 RYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALAH---DGPVLIDVHVRR 560 (616)
T ss_pred CceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 0 0 24688874 5999999996 888999999888763 899999999864
No 87
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.52 E-value=6.4e-14 Score=146.89 Aligned_cols=115 Identities=23% Similarity=0.316 Sum_probs=90.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++++. +.| |.+|++++||+++||.|| +||+.....
T Consensus 405 ~~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~ 478 (574)
T PRK09124 405 FNHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MGD-FLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYL 478 (574)
T ss_pred CCcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HHH-HHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCc
Confidence 46699999999999999986 68899999999999874 566 999999999987655555 588642100
Q ss_pred -cc--cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -RA--AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -~~--~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ...+||.+. +||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~i~~ 531 (574)
T PRK09124 479 TDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFAH---DGPALVDVVTAK 531 (574)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 01 124688874 5999999996 788999999888753 899999999865
No 88
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.52 E-value=5.5e-14 Score=147.86 Aligned_cols=116 Identities=23% Similarity=0.394 Sum_probs=91.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|+++++|+++||.||+ |++.....
T Consensus 434 ~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~e-L~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~ 507 (587)
T PRK06965 434 GGLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC-IQE-LSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSK 507 (587)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC-HHH-HHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45689999999999999996 68899999999999874 455 9999999999887666665 67532111
Q ss_pred c---c-c-CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R---A-A-KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~---~-~-~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
+ . . ..+||.+ +++|+++.+|+ ++.++.+++++|+++ .++|+|||+.+.+
T Consensus 508 ~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lieV~i~~ 563 (587)
T PRK06965 508 RYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL--KDRTVFLDFQTDP 563 (587)
T ss_pred CccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEecc
Confidence 1 0 1 2468887 45999999995 788999999998862 2789999999854
No 89
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.52 E-value=4.7e-14 Score=148.12 Aligned_cols=119 Identities=24% Similarity=0.214 Sum_probs=93.1
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~------ 240 (362)
+.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.|| +|++......
T Consensus 428 ~~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~ 501 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS-MNE-IMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNR 501 (579)
T ss_pred ccccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCc
Confidence 4589999999999999985 68899999999999885 455 999999999987665555 5886421110
Q ss_pred ----ccCC-chHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018037 241 ----AAKS-PSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (362)
Q Consensus 241 ----~~~~-~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~ 294 (362)
.... +||.+. ++|+++.+|+ +++++.+++++|++..+.++|+|||+.+.+-.
T Consensus 502 ~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~~~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 502 FVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQAEGKTTVIEIVCTREL 560 (579)
T ss_pred ceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhCCCCCcEEEEEEeCCCc
Confidence 0112 488874 5999999995 89999999999987543489999999996533
No 90
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.52 E-value=5.8e-14 Score=146.94 Aligned_cols=115 Identities=21% Similarity=0.301 Sum_probs=92.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
++.|.||+++|.|+|+++|. +++.||++.|||++.+. ++| |.+|+++++|+++||.||+ |++......
T Consensus 416 ~~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~ 489 (564)
T PRK08155 416 GGLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQ 489 (564)
T ss_pred CCcccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCC
Confidence 34589999999999999986 67899999999999885 677 8899999999987777776 887432110
Q ss_pred -----c-cCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -----A-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -----~-~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. ...+||.+. +||+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 490 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~~~~ 544 (564)
T PRK08155 490 RVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAINR---PGPALIHVRIDA 544 (564)
T ss_pred CeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 1 124688874 5999999996 688898888888753 899999999854
No 91
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.51 E-value=5.9e-14 Score=147.56 Aligned_cols=115 Identities=24% Similarity=0.411 Sum_probs=90.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||++.|||++.+. ..| |.+|+++++|+++||.||+ |++.....
T Consensus 427 ~~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~ 500 (585)
T CHL00099 427 AGLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN-LQE-LGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGE 500 (585)
T ss_pred ccccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45699999999999999986 67899999999999874 455 9999999999987777776 66532110
Q ss_pred c------ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~------~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
+ ....+||.+. ++|+++.+|+ +++++.+++++|++. ++|.|||+.+..
T Consensus 501 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~v~~ 556 (585)
T CHL00099 501 RYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALDY---DGPVLIDCQVIE 556 (585)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEECC
Confidence 0 1124688874 5999999996 688998888888763 899999999953
No 92
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.51 E-value=8.3e-14 Score=146.16 Aligned_cols=114 Identities=23% Similarity=0.287 Sum_probs=89.5
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~------ 240 (362)
+.|.||+++|.|+|+++|. +++.|||++|||++++ ..+.|++|+++++|+++||.||+ ||+......
T Consensus 435 g~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~ 508 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTH 508 (578)
T ss_pred CccccccHHHHHHHHHhhC----CCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCc
Confidence 4588999999999999885 6789999999999976 34569999999999988777776 565321111
Q ss_pred ----ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+. +||+++++|+ +++++.+++++|++. +||+|||+.+.+
T Consensus 509 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~lIev~~~~ 561 (578)
T PRK06112 509 TDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMAA---PGPTLIEVITDP 561 (578)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEcCc
Confidence 0124678774 5999999996 688988888887753 899999999854
No 93
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.50 E-value=7.5e-14 Score=145.87 Aligned_cols=115 Identities=25% Similarity=0.418 Sum_probs=91.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc------c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------~ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++.+. +.| |.+|+++++|+++||.||+ |++.... .
T Consensus 409 ~~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~~e-L~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~ 482 (558)
T TIGR00118 409 GGLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-LQE-LSTAVQYDIPVKILILNNRYLGMVRQWQELFYEE 482 (558)
T ss_pred CccccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCC
Confidence 34589999999999999885 67899999999999884 555 9999999999988887776 5643210 0
Q ss_pred -----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. ++|+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 483 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~~~~ 537 (558)
T TIGR00118 483 RYSHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALSS---NEPVLLDVVVDK 537 (558)
T ss_pred ceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 11124688875 5999999997 578999999888764 999999999965
No 94
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.50 E-value=9.9e-14 Score=145.59 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=90.6
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEE-EEcCCccccccc-----c--
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV-CENNHYGMGTAE-----W-- 239 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfV-v~NN~~gi~t~~-----~-- 239 (362)
..|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+++++++|+++| ++||+|++.... .
T Consensus 406 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~-~~e-L~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~ 479 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT-MQD-LLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPL 479 (575)
T ss_pred CcchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCc
Confidence 4699999999999999985 78899999999999884 555 99999999998765 555558864211 0
Q ss_pred --cccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 --RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 --~~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+ ++||+++.+|+ +++++.++++++++ ...++|+|||+.+..
T Consensus 480 ~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~~~~~p~liev~i~~ 533 (575)
T TIGR02720 480 IGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-IKQGKPVLIDAKITG 533 (575)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-hCCCCcEEEEEEeCC
Confidence 0112468887 45999999996 68899999999885 223899999999854
No 95
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.50 E-value=7.2e-14 Score=146.52 Aligned_cols=116 Identities=22% Similarity=0.386 Sum_probs=91.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|++++||+++||.||+ |++.....+
T Consensus 418 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~ 491 (572)
T PRK08979 418 GGLGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN-IQE-LSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQG 491 (572)
T ss_pred CCcccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc-HHH-HHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCC
Confidence 34689999999999999986 67899999999999874 455 9999999999876666555 776432110
Q ss_pred ----c-c-CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----A-A-KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~-~-~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. . ..+||.+ +++|+++.+|+ ++.++.+++++|++. +++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 547 (572)
T PRK08979 492 RHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM--KDRLVFVDINVDE 547 (572)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 0 1 2368887 45999999996 788999999988862 2899999999865
No 96
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.50 E-value=6.3e-14 Score=145.95 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=88.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc----c-
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW----R- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~----~- 240 (362)
++.|+||+++|.|+|+++|. +++.|||+.|||++++. ..| |.+|+++++|+++||.|| +|++..... .
T Consensus 401 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~E-L~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~ 474 (539)
T TIGR03393 401 PLWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT-IQE-LGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY 474 (539)
T ss_pred hhhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCc
Confidence 45699999999999999985 78899999999999874 455 999999999987555555 588643211 1
Q ss_pred -ccCCchHhh--hcCCcc----eEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 241 -AAKSPSYYK--RGDYVP----GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 241 -~~~~~~~~~--~g~gi~----g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
....+||.+ +++|++ +.+|+ ++.++.+++++|++. ++|+|||+.+.
T Consensus 475 ~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i~ 527 (539)
T TIGR03393 475 NDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAAH---ERLSLIEVVLP 527 (539)
T ss_pred CcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhcc---CCeEEEEEEcC
Confidence 123468877 458885 78985 788998888888754 99999999873
No 97
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.50 E-value=1.1e-13 Score=144.97 Aligned_cols=116 Identities=26% Similarity=0.369 Sum_probs=91.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.|||+.|||++.+. +.| |.+|++++||+|+||.||+ |++.....
T Consensus 411 ~~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~ 484 (563)
T PRK08527 411 GGLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEE 484 (563)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCC
Confidence 44599999999999999986 67889999999999884 666 9999999999887666665 77532111
Q ss_pred c-----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 240 R-----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 240 ~-----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
. ....+||.+ +++|+++++|+ +++++.+++++|++. ++|+|||+.+.+.
T Consensus 485 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lieV~v~~~ 540 (563)
T PRK08527 485 RYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALES---DKVALIDVKIDRF 540 (563)
T ss_pred ceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEECCc
Confidence 0 012357877 45999999996 788998888888753 8999999999763
No 98
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.50 E-value=8.3e-14 Score=146.10 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=91.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++. +.| |.+|++++||+++||.|| +|++.....
T Consensus 420 ~~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~ 493 (574)
T PRK06466 420 GGLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN-IQE-LSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEG 493 (574)
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCC
Confidence 45689999999999999986 68899999999999874 455 999999999987666555 588532110
Q ss_pred ---cc--cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---RA--AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~~--~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ...+||.+ ++||+++.+|+ ++.++.+++++|++. +++|+|||+.+.+
T Consensus 494 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~--~~~p~lIev~i~~ 549 (574)
T PRK06466 494 RHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM--KDRLVFIDIYVDR 549 (574)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 01 12368887 45999999996 788999999988862 2899999999965
No 99
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.50 E-value=1e-13 Score=146.03 Aligned_cols=117 Identities=26% Similarity=0.300 Sum_probs=91.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhC-----CCCeEEEEEcCC-ccccccc--
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-----DLPAILVCENNH-YGMGTAE-- 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~-----~LPvIfVv~NN~-~gi~t~~-- 238 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++....| |.+|+++ +||+++||.||+ |++....
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~ 486 (597)
T PRK08273 412 GTLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQR 486 (597)
T ss_pred CccccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHH
Confidence 45689999999999999986 688999999999997743455 8899998 899987777665 7753211
Q ss_pred ---cc-------ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 239 ---WR-------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 239 ---~~-------~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
.. ....+||.+. ++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+.
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIeV~~~~~ 548 (597)
T PRK08273 487 VMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALAA---DRPVVLEVKTDPN 548 (597)
T ss_pred HhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCCC
Confidence 00 1124578774 5999999996 788999999888764 9999999999653
No 100
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.50 E-value=1.2e-13 Score=144.19 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=89.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCC-CCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW----- 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~-~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~----- 239 (362)
++.|.||+++|.|+|+++|. + ++.|||++|||++.+. ..| |.+|+.++||+++||.|| +|++.....
T Consensus 393 ~~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~-~~e-L~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~ 466 (549)
T PRK06457 393 AWLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT-MME-LITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGY 466 (549)
T ss_pred CCcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh-HHH-HHHHHHHCCCeEEEEEECCccchHHHHHHHhcC
Confidence 45799999999999999986 5 7899999999998874 445 899999999987655555 588642110
Q ss_pred ----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. +||+++.+|+ +++++..++++|++. ++|+|||+.+.+
T Consensus 467 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 520 (549)
T PRK06457 467 PEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLNT---KGPAVLDAIVDP 520 (549)
T ss_pred CcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCc
Confidence 01124688874 5999999996 789999999988753 899999999864
No 101
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.49 E-value=1.5e-13 Score=131.74 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=84.9
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccccc-chHHHHHHHHHhCCCCeEEEEEcCC-cccccccccc-----
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA----- 241 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~-G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~----- 241 (362)
.+++|.++|+|+|+++|. +++.||++.|||++.+ | ..| +.+|+++++|+++||.||+ ||+...+...
T Consensus 67 ~~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g-~~e-l~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g 140 (277)
T PRK09628 67 HTTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIG-GNH-TIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKG 140 (277)
T ss_pred eeccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhh-HHH-HHHHHHhCcCeEEEEEEChHHhcceecccCCCCCC
Confidence 358899999999999986 7899999999999753 3 333 6679999999987766665 7874321110
Q ss_pred -----------cCCchHhh--hcCCcceE---EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 242 -----------AKSPSYYK--RGDYVPGL---KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 242 -----------~~~~~~~~--~g~gi~g~---~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....||.+ .++|++++ +| .++.++.+++++|+++ +||+|||+.+.-
T Consensus 141 ~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v--~~~~el~~al~~Al~~---~Gp~lIeV~~~c 202 (277)
T PRK09628 141 MWTVTAQYGNIDPTFDACKLATAAGASFVARESV--IDPQKLEKLLVKGFSH---KGFSFFDVFSNC 202 (277)
T ss_pred ceeeeccCCCcCCCCCHHHHHHHCCCceEEEEcc--CCHHHHHHHHHHHHhC---CCCEEEEEcCCC
Confidence 01235666 45899875 56 4899999999999875 999999997643
No 102
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.49 E-value=1.8e-13 Score=142.96 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=90.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccc-cccc----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGT-AEWR---- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t-~~~~---- 240 (362)
...|.||+++|.|+|++++. +++.|||++|||++.+. . .+|.+|+++++|+++||.||+ |++.. .+..
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDGsf~~~-~-~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~ 485 (557)
T PRK08199 412 PTSGSMGYGLPAAIAAKLLF----PERTVVAFAGDGCFLMN-G-QELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPG 485 (557)
T ss_pred CCCccccchHHHHHHHHHhC----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCC
Confidence 45799999999999999885 68899999999998863 3 459999999999988887777 77532 1111
Q ss_pred -----ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -----AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -----~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+ ++||+++.+|+ +++++.++++++++. +||+|||+.+.+
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~---~gp~li~v~~~~ 539 (557)
T PRK08199 486 RVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALAS---GKPALIEIRIDP 539 (557)
T ss_pred ccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCH
Confidence 112368887 45999999997 677888888887653 899999999865
No 103
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.49 E-value=1.1e-13 Score=145.17 Aligned_cols=115 Identities=23% Similarity=0.275 Sum_probs=91.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc-cc----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-WR---- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~-~~---- 240 (362)
++.|.||+++|.|+|+++|. +++.||++.|||++.+. ..| |.+|++++||+++||.||+ |++.... ..
T Consensus 418 ~~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~ 491 (572)
T PRK06456 418 SGMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT-GTN-LATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGK 491 (572)
T ss_pred CCcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc-hHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCC
Confidence 45699999999999999986 67899999999998875 455 9999999999876666665 8864321 10
Q ss_pred -----c-cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 -----A-AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 -----~-~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. ...+||.+ +++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~v~~ 546 (572)
T PRK06456 492 RIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIKE---DIPAVIRVPVDK 546 (572)
T ss_pred CcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCc
Confidence 0 12368887 45999999995 788999988888754 899999999976
No 104
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.49 E-value=1.6e-13 Score=143.48 Aligned_cols=115 Identities=25% Similarity=0.344 Sum_probs=90.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc------c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------~ 239 (362)
++.|+||+++|.|+|+++|. +++.||++.|||++++. ..| |.+|+++++|+++||.||+ |++.... .
T Consensus 411 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~ 484 (561)
T PRK06048 411 GGLGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN-SQE-LATAVQNDIPVIVAILNNGYLGMVRQWQELFYDK 484 (561)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc-HHH-HHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCC
Confidence 34589999999999999985 67899999999999875 455 9999999999876666654 7753211 0
Q ss_pred c---cc--CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R---AA--KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~---~~--~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. .. ..+||.+ +++|+++.+|+ ++.++.+++++|++. ++|+|||+.+.+
T Consensus 485 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~~---~~p~liev~~~~ 539 (561)
T PRK06048 485 RYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVAS---DRPVVIDFIVEC 539 (561)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 1 11 3468887 45999999996 788999999888754 999999999865
No 105
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.49 E-value=1.3e-13 Score=129.52 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=87.5
Q ss_pred CCccccchhHHHHHHHHHH-hhCCCCCeEEEEeCCcccc-cchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc----
Q 018037 168 GHGIVGAQIPLGCGLAFAQ-KYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR---- 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~-k~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~---- 240 (362)
+.|.||+++|.|+|+++|. +...+++.|||+.|||++. +| +.| +.++..+++|+++||.||+ ||+...+..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 4599999999999999881 1113688999999999964 44 555 5667789999987777776 775431211
Q ss_pred ------------ccCCchHhhh--cCCcceEE---EeCCCHHHHHHHHHHHHH-HhccCCCEEEEEEEe
Q 018037 241 ------------AAKSPSYYKR--GDYVPGLK---VDGMDALAVKQACKFAKE-HALKNGPMILEMDTY 291 (362)
Q Consensus 241 ------------~~~~~~~~~~--g~gi~g~~---VdG~D~~av~~a~~~A~~-~ar~~gP~lIe~~ty 291 (362)
....+||.+. ++|+++++ |+ ++.++.+++++|++ . +||+|||+.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~~~---~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAISRT---DGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHhcC---CCCEEEEEeCC
Confidence 1124688874 59999985 64 68999999999986 4 99999999863
No 106
>PRK08617 acetolactate synthase; Reviewed
Probab=99.48 E-value=1.1e-13 Score=144.48 Aligned_cols=115 Identities=19% Similarity=0.267 Sum_probs=90.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~----- 240 (362)
++.|.||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|+++++|+++||.|| .|++......
T Consensus 411 ~~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~ 484 (552)
T PRK08617 411 NGMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS-AME-LETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGR 484 (552)
T ss_pred CccccccccccHHHhhHhhc----CCCcEEEEEechHHhhh-HHH-HHHHHHhCCCeEEEEEECCccchHHHHHHhhcCC
Confidence 34689999999999999986 68899999999999874 455 899999999987665555 5776421110
Q ss_pred ----ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ----~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
....+||.+. +||+++.+|. +++++.+++++|++. ++|+|||+.+.+
T Consensus 485 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~liev~~~~ 537 (552)
T PRK08617 485 SSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALAT---DGPVVIDIPVDY 537 (552)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCcEEEEEEecc
Confidence 1124688874 5999999995 788998888888753 899999999865
No 107
>PLN02573 pyruvate decarboxylase
Probab=99.48 E-value=1.2e-13 Score=145.12 Aligned_cols=116 Identities=18% Similarity=0.094 Sum_probs=89.6
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc----cc
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW----RA 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~----~~ 241 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.||+ |++..... ..
T Consensus 425 ~~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~ 498 (578)
T PLN02573 425 MQYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT-AQD-VSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNV 498 (578)
T ss_pred cchhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceeEEEeecccCccc
Confidence 44699999999999999986 68899999999999874 455 9999999999876666554 88643211 11
Q ss_pred cCCchHhhh--cCC-----cceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 242 AKSPSYYKR--GDY-----VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 242 ~~~~~~~~~--g~g-----i~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
...+||.+. +|| +++.+|+ +++++.+++++|++. ..++|+|||+.+.
T Consensus 499 ~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~-~~~~p~lieV~v~ 552 (578)
T PLN02573 499 IKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE-KKDCLCFIEVIVH 552 (578)
T ss_pred cCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh-CCCCcEEEEEEcC
Confidence 134688774 453 8999996 788999999998752 1289999999873
No 108
>PRK08322 acetolactate synthase; Reviewed
Probab=99.48 E-value=1.8e-13 Score=142.51 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=89.9
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEE-cCCcccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~-NN~~gi~t~~~------ 239 (362)
.+.|.||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|+++++|+++||. |++|++.....
T Consensus 403 ~~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~ 476 (547)
T PRK08322 403 NALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN-SQE-LETAVRLGLPLVVLILNDNAYGMIRWKQENMGFE 476 (547)
T ss_pred CCcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc-HHH-HHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCC
Confidence 34689999999999999985 67899999999998874 455 8899999999865555 55588642110
Q ss_pred c---ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R---AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~---~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. ....+||.+ ++||+++.+|+ +++++.++++++++. ++|+|||+.+.+
T Consensus 477 ~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIev~v~~ 529 (547)
T PRK08322 477 DFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALAQ---PGVHVIDCPVDY 529 (547)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 0 112468887 45999999995 788999999888753 899999999854
No 109
>PRK08611 pyruvate oxidase; Provisional
Probab=99.48 E-value=1.8e-13 Score=143.73 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=90.0
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc-------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------- 239 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------- 239 (362)
+.|.||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|+++++|+++||.|| +|++.....
T Consensus 406 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~ 479 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV-MQD-FVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELE 479 (576)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh-HHH-HHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 3699999999999999986 67899999999999884 455 899999999986555555 588632110
Q ss_pred --cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 240 --~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
.....+||.+. +||+++.+|+ +++++.++++++++. ++|+|||+.+.+.
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~p~lIeV~vd~~ 532 (576)
T PRK08611 480 YAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALAQ---DKPVIIDVYVDPN 532 (576)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEeCCc
Confidence 11124688874 5999999995 788998888888754 9999999999763
No 110
>PLN02470 acetolactate synthase
Probab=99.48 E-value=1.4e-13 Score=144.74 Aligned_cols=115 Identities=25% Similarity=0.390 Sum_probs=90.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccc-------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE------- 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~------- 238 (362)
++.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.|| +|++....
T Consensus 423 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~ 496 (585)
T PLN02470 423 GGLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN-IQE-LATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKA 496 (585)
T ss_pred CccccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCC
Confidence 34599999999999999986 68899999999999885 455 999999999987665555 57753211
Q ss_pred --c-cccC--------CchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 239 --W-RAAK--------SPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 239 --~-~~~~--------~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. .... .+||.+ +++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 497 ~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lieV~i~~ 558 (585)
T PLN02470 497 NRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLDT---PGPYLLDVIVPH 558 (585)
T ss_pred ceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 0 0001 168887 45999999995 788999999888763 899999999964
No 111
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.47 E-value=2.6e-13 Score=142.33 Aligned_cols=115 Identities=27% Similarity=0.428 Sum_probs=90.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++.+. ++| |.+|+++++|+++||.||+ |++.....
T Consensus 421 ~~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~ 494 (571)
T PRK07710 421 GGLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQ 494 (571)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCC
Confidence 45589999999999999985 68899999999999873 666 9999999999876655554 77632210
Q ss_pred -----cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 -----~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.....+||.+. +||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 495 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lieV~vd~ 549 (571)
T PRK07710 495 RYSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIEL---QEPVVIDCRVLQ 549 (571)
T ss_pred cceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 01124688874 5999999996 677888888777753 899999999975
No 112
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.46 E-value=3.4e-13 Score=141.41 Aligned_cols=116 Identities=23% Similarity=0.411 Sum_probs=91.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccc-------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~------- 238 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++.+. + ++|.+|+++++|+++||.||+ |++....
T Consensus 418 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~ 491 (574)
T PRK06882 418 GGAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN-I-QELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSG 491 (574)
T ss_pred CCcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCC
Confidence 45699999999999999985 67889999999999885 4 459999999999987777776 6643211
Q ss_pred --ccc--cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 239 --WRA--AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 239 --~~~--~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
... ...+||.+ ++||+++++|+ +++++.+++++|++. .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~liev~i~~ 547 (574)
T PRK06882 492 RHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI--KDKLVFVDVNVDE 547 (574)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEecC
Confidence 000 12468887 45999999996 688999999888863 2789999999975
No 113
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.46 E-value=5e-13 Score=128.08 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=88.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCc-ccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccccc--
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG-AANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAA-- 242 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDG-a~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~-- 242 (362)
...+.+|.++|+|+|+++|. ++..||++.||| ++.+| +.| |.+|+++|+|+++||.||+ ||++..+...+
T Consensus 56 ~~~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig-~~e-L~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~ 129 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIG-LGH-LPHAARRNVDITYIVSNNQVYGLTTGQASPTTP 129 (279)
T ss_pred CcccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHcc-HHH-HHHHHHHCcCcEEEEEEChhhhhhcccccCCCC
Confidence 44688999999999999995 788999999999 58877 344 8899999999987777776 78764222111
Q ss_pred --------C--C----chHhh--hcCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 243 --------K--S----PSYYK--RGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 243 --------~--~----~~~~~--~g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
. . .|+.+ +++|++.+. ....++.++.+++++|+++ +||.|||+..
T Consensus 130 ~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~---~Gps~I~v~~ 191 (279)
T PRK11866 130 RGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKH---KGFSFIDVLS 191 (279)
T ss_pred CCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 1 26665 458887654 3557999999999999875 9999999983
No 114
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.45 E-value=3.5e-13 Score=140.56 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=90.1
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|+++++|+++||.|| +|++.....
T Consensus 398 ~~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~-~~e-L~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~ 471 (548)
T PRK08978 398 SGLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN-VQE-LGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDE 471 (548)
T ss_pred CchhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCC
Confidence 34599999999999999986 67899999999998874 455 999999999987655555 587532110
Q ss_pred c--cc---CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R--AA---KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~--~~---~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
+ .. ..+||.+. +||+++.+|+ +++++.+++++|++. ++|.|||+.+.+
T Consensus 472 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~id~ 526 (548)
T PRK08978 472 RYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLNS---EGPYLLHVSIDE 526 (548)
T ss_pred cceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecC
Confidence 1 11 23688874 5999999995 788999999888753 899999999976
No 115
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.45 E-value=8.1e-13 Score=131.16 Aligned_cols=132 Identities=20% Similarity=0.168 Sum_probs=96.0
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCC-CeEEEEEcCC-cccccccccccCCc
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSP 245 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~L-PvIfVv~NN~-~gi~t~~~~~~~~~ 245 (362)
..|+||+++|+|+|+++|. +++.|||+.|||++.+. . .+|.+++.+++ |+++||.||+ |+....+.......
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm~-~-~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMH-M-GGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHHH-H-HHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3599999999999999986 67899999999998652 2 34888999996 7877777776 66533222222356
Q ss_pred hHhh--hcCCc-ceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCChhhHHh
Q 018037 246 SYYK--RGDYV-PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (362)
Q Consensus 246 ~~~~--~g~gi-~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~ 313 (362)
||.+ +++|+ .+++| ++.+++.++++++++. +||+|||+.+....+-....| -+++.|.++
T Consensus 293 d~~~iA~a~G~~~~~~v--~~~~eL~~al~~a~~~---~gp~lIeV~v~~g~~~~l~rp---~~~p~e~~~ 355 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEV--STLEELETALTAASSA---NGPRLIEVKVRPGSRADLGRP---TTSPPENKR 355 (361)
T ss_pred CHHHHHHHCCCceEEEe--CCHHHHHHHHHHHHhC---CCcEEEEEEecCCCccCCCCC---CCCHHHHHH
Confidence 8877 45886 46666 5899999999988653 899999999876554443333 356666553
No 116
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.45 E-value=7.1e-13 Score=138.49 Aligned_cols=114 Identities=21% Similarity=0.190 Sum_probs=89.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccc--c---c-
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTA--E---W- 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~--~---~- 239 (362)
++.|+||+++|.|+|+++|. ++.||++.|||++++. ..| |.+|+++++|+++||.||+ |..... . .
T Consensus 414 ~~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~-~~E-L~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~ 486 (554)
T TIGR03254 414 GTWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADP 486 (554)
T ss_pred CCCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhccc-HHH-HHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCC
Confidence 34599999999999999972 6789999999999874 556 9999999999988888776 421100 0 0
Q ss_pred --cc-cCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 --RA-AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 --~~-~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.. ...+||.+ ++||+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 487 ~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~id~ 539 (554)
T TIGR03254 487 APTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALAS---GKPTLINAVIDP 539 (554)
T ss_pred CccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEEECC
Confidence 01 13468887 45999999995 789999999988753 899999999854
No 117
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.43 E-value=1.3e-12 Score=125.97 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=85.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccc---
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA--- 241 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~--- 241 (362)
+..+++|.++|+|+|+++|. +++.||++.|||+ ++.| ..| |.+|+++++|+++||.||+ ||+...+...
T Consensus 66 ~~~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg-~~e-L~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~ 139 (286)
T PRK11867 66 GFHTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIG-GNH-FIHALRRNIDITYILFNNQIYGLTKGQYSPTSP 139 (286)
T ss_pred chhhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCC-HHH-HHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCC
Confidence 44589999999999999985 7899999999996 7776 344 8899999999877666665 8875432110
Q ss_pred ----c---------CCchHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 242 ----A---------KSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 242 ----~---------~~~~~~~~--g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
+ ...++.+. ++|...+. +.-.++.++.+++++|+++ +||+|||+.+
T Consensus 140 ~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~---~Gp~lIev~~ 201 (286)
T PRK11867 140 VGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH---KGFSFVEILQ 201 (286)
T ss_pred CCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 01355554 46766552 2345799999999999865 9999999974
No 118
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.43 E-value=6.9e-13 Score=127.15 Aligned_cols=116 Identities=20% Similarity=0.126 Sum_probs=87.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~----- 240 (362)
+..+.+|.++|+|+|+++|. +++.||++.|||++..--+.| |.+|+++++|+++||.||+ ||+...+..
T Consensus 57 ~~~~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~iG~~e-L~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~ 131 (280)
T PRK11869 57 GFHTLHGRAIPAATAVKATN----PELTVIAEGGDGDMYAEGGNH-LIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLK 131 (280)
T ss_pred CCCcccccHHHHHHHHHHHC----CCCcEEEEECchHHhhCcHHH-HHHHHHhCcCcEEEEEECHHHhhhcceecCCCCC
Confidence 34466999999999998885 788999999999965311444 9999999999987777776 786432211
Q ss_pred -----------ccCCchHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 241 -----------AAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 241 -----------~~~~~~~~~~--g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
.....||.+. ++|++++.. +-.++.++.+++++|+++ +||+|||+.+
T Consensus 132 g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~---~Gp~lIeV~~ 192 (280)
T PRK11869 132 GFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKH---KGLAIVDIFQ 192 (280)
T ss_pred CcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 0012467664 589988763 245899999999999976 9999999984
No 119
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.42 E-value=7.1e-13 Score=139.41 Aligned_cols=114 Identities=25% Similarity=0.332 Sum_probs=89.5
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccc------c
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~------~ 240 (362)
+.|+||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|+++++|+++||.||+ |++..... .
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~ 490 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-SQE-LATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKR 490 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCC
Confidence 4589999999999999985 67889999999998875 455 9999999999876666665 87642111 0
Q ss_pred ---c-c-CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 241 ---A-A-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 241 ---~-~-~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. . ..+||.+. ++|+++.+|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIeV~i~~ 544 (586)
T PRK06276 491 QSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIKS---GEPYLLDIIIDP 544 (586)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEecc
Confidence 1 1 23578874 5999999995 789999999888753 899999999854
No 120
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.42 E-value=1.1e-12 Score=137.48 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=89.2
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccc----c--c
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTA----E--W 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~----~--~ 239 (362)
++.|+||+++|.|+|+++|. ++.||+++|||++++. +.| |.+|+++++|+++||.||+ |-.... . .
T Consensus 421 ~~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~ 493 (569)
T PRK09259 421 GTWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGD 493 (569)
T ss_pred CCCccccccHHHHHHHHhcC-----CCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCC
Confidence 34699999999999999982 6789999999999874 566 9999999999988888887 311110 0 0
Q ss_pred ---c-ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ---R-AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ---~-~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. ....+||.+. ++|+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 494 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~lIev~id~ 547 (569)
T PRK09259 494 PSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIAS---GKPTLINVVIDP 547 (569)
T ss_pred ccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEECC
Confidence 0 0135688874 5999999995 788999999988764 999999999854
No 121
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.42 E-value=1.4e-12 Score=125.45 Aligned_cols=114 Identities=19% Similarity=0.276 Sum_probs=83.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccccc--
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAA-- 242 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~-- 242 (362)
+..+.+|.++|+|+|+++|. +++.||++.|||++ .+| ..| |.+|+++++|+++||.||+ ||+...+...+
T Consensus 50 ~~~t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg-~~e-L~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~ 123 (287)
T TIGR02177 50 GFHGLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIG-GNH-FVAAGRRNVDITVIVHDNQVYGLTKGQASPTLL 123 (287)
T ss_pred CcccccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhcc-HHH-HHHHHHhCcCeEEEEEECHHHHhhhcccccCcc
Confidence 34467899999999999985 78999999999995 465 333 8899999999987776665 78754322100
Q ss_pred ----------------CCchHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 243 ----------------KSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 243 ----------------~~~~~~~~g--~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
..+++.+.+ +++.+.. ...++.++.+++++|+++ +||+|||+.+
T Consensus 124 ~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~-~~~~~~eL~~ai~~Al~~---~GpslIeV~~ 185 (287)
T TIGR02177 124 KGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARG-FSGDVAHLKEIIKEAINH---KGYALVDILQ 185 (287)
T ss_pred CCcceeecccCccCCCCCHHHHHHhCCCCeEEEE-ecCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 123455544 5544443 236899999999999875 9999999974
No 122
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.42 E-value=4.6e-13 Score=141.54 Aligned_cols=116 Identities=22% Similarity=0.357 Sum_probs=90.3
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.|||++|||++.+. ..| |.+|++++||+++||.|| +|++.....
T Consensus 444 ~~~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~ 517 (612)
T PRK07789 444 GGLGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT-NQE-LATCAIEGIPIKVALINNGNLGMVRQWQTLFYEE 517 (612)
T ss_pred CCcccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc-HHH-HHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCC
Confidence 45589999999999999986 67899999999998874 444 999999999987665555 588532110
Q ss_pred c----c--c---CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 R----A--A---KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ~----~--~---~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. . . ..+||.+ +++|+++.+|+ +++++.+++++|++. .++|+|||+.+.+
T Consensus 518 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 577 (612)
T PRK07789 518 RYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI--NDRPVVIDFVVGK 577 (612)
T ss_pred CcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEECC
Confidence 0 0 0 1268887 45999999995 788999999999873 2799999999965
No 123
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.42 E-value=4.7e-13 Score=140.26 Aligned_cols=114 Identities=25% Similarity=0.356 Sum_probs=87.5
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~------ 239 (362)
++.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|+++++|+++||.|| +|++.....
T Consensus 415 ~~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~ 488 (566)
T PRK07282 415 GGLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT-NQE-LAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEG 488 (566)
T ss_pred CccccccchhhHhheeheec----CCCcEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCC
Confidence 34699999999999999986 68899999999999874 455 999999999987665555 588633111
Q ss_pred ----ccc-CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ----RAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ----~~~-~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
... ..+||.+. +||+.+.+|+ ++.++.++++ +++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~---~~~p~lIeV~v~~ 542 (566)
T PRK07282 489 RTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT---EDVPMLIEVDISR 542 (566)
T ss_pred CcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc---CCCCEEEEEEeCC
Confidence 111 24688874 5999999996 7888888775 332 3899999999865
No 124
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.41 E-value=9.4e-13 Score=137.15 Aligned_cols=114 Identities=19% Similarity=0.158 Sum_probs=87.0
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Cccccccccc-----
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~----- 240 (362)
+..|+||+++|.|+|+++|. + +.+|+++|||++++. .+| |.+|+++++|+++||.|| +|++......
T Consensus 400 ~~~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~ 472 (535)
T TIGR03394 400 GYYAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQMT-GWE-LGNCRRLGIDPIVILFNNASWEMLRVFQPESAFN 472 (535)
T ss_pred CccchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHhH-HHH-HHHHHHcCCCcEEEEEECCccceeehhccCCCcc
Confidence 35699999999999999984 3 445889999999874 555 999999999987665555 5886432211
Q ss_pred ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 241 AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 241 ~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
....+||.+ ++||+++.+|+ ++.++.+++++|++. .++|+|||+.+.
T Consensus 473 ~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~ 521 (535)
T TIGR03394 473 DLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT--RGRFQLIEAMLP 521 (535)
T ss_pred cCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc--CCCeEEEEEECC
Confidence 123468876 56999999996 788999999888752 255899999873
No 125
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.38 E-value=8.6e-13 Score=138.16 Aligned_cols=112 Identities=21% Similarity=0.151 Sum_probs=85.6
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccc----cc---
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTA----EW--- 239 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~----~~--- 239 (362)
+.+.+|+++|.|+|+++| +++.|||+.|||++++. ..| |.+|+++++|+++||.||+ |++-.. +.
T Consensus 423 g~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~-~~e-L~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~ 495 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD-LNG-LLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPV 495 (568)
T ss_pred CccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC-cHH-HHhhcccCCCeEEEEEECCCCccccCCCCCCCcch
Confidence 347799999999999987 36789999999998874 445 8899999999876666665 774211 10
Q ss_pred --c---ccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 240 --R---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 240 --~---~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
+ ....+||.+. +||+++.+|+ +++++.+++++|++. ++|+|||+.+.
T Consensus 496 ~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~p~lIev~id 549 (568)
T PRK07449 496 FERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALPT---PGLTVIEVKTN 549 (568)
T ss_pred hhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhcC---CCCEEEEEeCC
Confidence 0 1124688875 4999999995 788999999888753 89999999873
No 126
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.35 E-value=5.3e-12 Score=133.12 Aligned_cols=118 Identities=19% Similarity=0.102 Sum_probs=88.5
Q ss_pred cccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC-Ccccccccccc--
Q 018037 165 FYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWRA-- 241 (362)
Q Consensus 165 ~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN-~~gi~t~~~~~-- 241 (362)
+....+.||+++|.|+|+++|. +++.||+++|||++.+..+.| |.+|+.+++|+++||.|| .||+...+...
T Consensus 398 ~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~~e-L~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~ 472 (595)
T TIGR03336 398 TVDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGIPG-LINAVYNKANITVVILDNRITAMTGHQPNPGT 472 (595)
T ss_pred ccceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCHHH-HHHHHHcCCCeEEEEEcCcceeccCCCCCCCC
Confidence 3344689999999999999885 678999999999987532455 888999999988776666 57875432110
Q ss_pred --------cCCchHhh--hcCCcceEEEeC-CCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 242 --------AKSPSYYK--RGDYVPGLKVDG-MDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 242 --------~~~~~~~~--~g~gi~g~~VdG-~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
...+||.+ +++|+++.+|.. .+..++.++++++++. +||++|++..
T Consensus 473 ~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~---~gp~li~v~~ 529 (595)
T TIGR03336 473 GVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAA---EGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhc---CCCEEEEEcc
Confidence 12357776 569999998854 4556778888888764 8999999964
No 127
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.24 E-value=1.7e-10 Score=111.56 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=96.9
Q ss_pred CcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccc
Q 018037 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA 241 (362)
Q Consensus 164 ~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~ 241 (362)
++...++.+|.+.++|.|++.|.+..+++..||++.|||++ ..| + ++|.-|...+.++++||.||. |+++.-+...
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG-~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG-F-QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc-H-HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 44566789999999999999998876677899999999995 455 3 678899999999999999887 6664332211
Q ss_pred ---------------------cCCchHhh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE--ecCCC
Q 018037 242 ---------------------AKSPSYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT--YRYHG 295 (362)
Q Consensus 242 ---------------------~~~~~~~~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t--yR~~G 295 (362)
....|+.. .++|++.+ +++-.++.++.+++++|+++ +||.||++.. ...++
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~---~Gps~I~v~sPC~~~~~ 217 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV---EGPAYIQVLQPCPTGWG 217 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCCC
Confidence 01224444 34787776 56767999999999999876 9999999984 33444
Q ss_pred CC
Q 018037 296 HS 297 (362)
Q Consensus 296 Hs 297 (362)
+.
T Consensus 218 ~~ 219 (299)
T PRK11865 218 FP 219 (299)
T ss_pred CC
Confidence 43
No 128
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.24 E-value=1.1e-11 Score=119.16 Aligned_cols=158 Identities=27% Similarity=0.327 Sum_probs=123.0
Q ss_pred HHHHHHHHhCCCCCCCCCCCCc-------cCCccCCCCc-ccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccc
Q 018037 134 LLEVFSELMGRKDGCSHGKGGS-------MHFYKKDSGF-YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN 205 (362)
Q Consensus 134 ~~~~lael~g~~~g~~~Grggs-------~H~~~~~~~~-~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~ 205 (362)
+++-|.+.|||...+..-.|-| .|.+.|.+.+ .+..|++|+.+|+|+|+..|. +++.+|++.||-.++
T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~ad----p~r~vvalsgdydfq 450 (592)
T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVAISGDYDFQ 450 (592)
T ss_pred HHHHHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeecC----CCCceEEeecCchHH
Confidence 5677888999988655444432 7888887665 466799999999999998764 888999999999988
Q ss_pred cchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchH---------------------hh--hcCCcceEEEeC
Q 018037 206 QGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSY---------------------YK--RGDYVPGLKVDG 261 (362)
Q Consensus 206 ~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~---------------------~~--~g~gi~g~~VdG 261 (362)
- ..|.|...+++++|-|+|+.||.| |......+.+ ..|| .+ .|.|++.++|
T Consensus 451 f--mieelavgaq~k~pyihv~vnnaylglirqaqr~f-~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv-- 525 (592)
T COG3960 451 F--LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAF-DMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV-- 525 (592)
T ss_pred H--HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcC-CccceeeehhhccCCccccccCccceeehhccCceeEEe--
Confidence 5 678899999999999999999998 6543333222 1111 11 2356777888
Q ss_pred CCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCC
Q 018037 262 MDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSD 300 (362)
Q Consensus 262 ~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~D 300 (362)
.+|.++..++.+|...+.+ .-|+++|+...|....|++-
T Consensus 526 ~~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismgt 565 (592)
T COG3960 526 FKPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMGT 565 (592)
T ss_pred cChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhcccccc
Confidence 5899999999999988878 89999999999999888753
No 129
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.16 E-value=2.1e-10 Score=115.99 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=103.1
Q ss_pred cchHHHHHHHHhcCCCCCEEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcc--cCCccccch
Q 018037 98 DGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY--GGHGIVGAQ 175 (362)
Q Consensus 98 ~GqEa~~vg~~~~l~~~D~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~--~~~g~lG~~ 175 (362)
.-||-+.--+...|+++|.|+.- .|. .+||-. -+...++..|. +-+|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tGt-------------S~FG~~----------~~~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TGT-------------SFFGAL----------DIRLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---ccc-------------ccccce----------eeecCCCCeEEcccchhhcccc
Confidence 56777776788899999999872 111 123211 12222222222 457999999
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCcccccccccccC------CchHh
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK------SPSYY 248 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~~~~~~------~~~~~ 248 (362)
+|++.|+++|. +++++|.|+||||++. -++| +.+-.+|+|| +|||++|++|.|......... .=||.
T Consensus 417 ~pAalGa~~A~----~drR~IL~iGDGs~Ql-TvQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~ 490 (557)
T COG3961 417 LPAALGAALAA----PDRRVILFIGDGSLQL-TVQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYT 490 (557)
T ss_pred cHhhhhhhhcC----CCccEEEEEcCchhhh-hHHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchh
Confidence 99999999998 6799999999999987 3677 7777899997 789999999987544433110 11333
Q ss_pred h--hcCCcce----EEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 249 K--RGDYVPG----LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 249 ~--~g~gi~g----~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
+ .++|... .++ ...+.+..++..+.+. .+++.+|||.+.+
T Consensus 491 ~l~~afg~~~~~~~~~~--~~~~~l~~~~~~~~~~--~~~i~lIEv~lp~ 536 (557)
T COG3961 491 ALPEAFGAKNGEAKFRA--TTGEELALALDVAFAN--NDRIRLIEVMLPV 536 (557)
T ss_pred hhhhhcCCCCceEEEee--cChHHHHHHHHHHhcC--CCceEEEEEecCc
Confidence 3 2344332 223 2334554555544431 2689999998865
No 130
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.16 E-value=3.6e-10 Score=111.61 Aligned_cols=226 Identities=20% Similarity=0.200 Sum_probs=142.7
Q ss_pred ceeeeCCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HhccccccccccC-----cchHHHHH
Q 018037 36 PLTIETSVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSL-----YKAKLVRGFCHLY-----DGQEAVAI 105 (362)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l-----~~~g~i~gf~h~~-----~GqEa~~v 105 (362)
-+-||++ |-..-+.-.|-...+=+-..-+......+..|..|++.+.+ +|++--..|.... .-|+++.+
T Consensus 402 IiHfdis-pknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~sf~~~tpGe~ikPQ~vIk~ 480 (675)
T KOG4166|consen 402 IIHFDIS-PKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLSFKEETPGEAIKPQYVIKV 480 (675)
T ss_pred eEEEecC-HHHhCcccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhCCeeeeccCCccccChHHHHHH
Confidence 4677777 65555554454444444444444445556777777766532 2332112222112 34666654
Q ss_pred HHHhcCCCCC-EEEcCchhHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCC-cccCCccccchhHHHHHHH
Q 018037 106 GMEAGITKKD-SIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSG-FYGGHGIVGAQIPLGCGLA 183 (362)
Q Consensus 106 g~~~~l~~~D-~v~~~yR~h~~~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~-~~~~~g~lG~~~p~A~G~A 183 (362)
--...=+.+| +++++.-+...+++. +++. +..|... ..|+.|.||+++|+|+|+.
T Consensus 481 Ldk~t~d~~~kviitTGVGqHQMWAA---------qfy~--------------w~kP~~~~tSGGLGtMGfGLPAAIGAs 537 (675)
T KOG4166|consen 481 LDKLTDDTGRKVIITTGVGQHQMWAA---------QFYN--------------WKKPRQWLTSGGLGTMGFGLPAAIGAS 537 (675)
T ss_pred HHHhccCcCceEEEeccccHHHHHHH---------HHhc--------------ccCccceeecCCccccccCcchhhccc
Confidence 2222212233 556766666565552 2221 1112111 1367899999999999998
Q ss_pred HHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccc----------cCCchHhhhc-
Q 018037 184 FAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA----------AKSPSYYKRG- 251 (362)
Q Consensus 184 ~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~----------~~~~~~~~~g- 251 (362)
.|. ++.+||-+-||+++++- +.| |.++.+.++||-+++.||. .||-+..+.. ..+|+|-+.+
T Consensus 538 VA~----P~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~ 611 (675)
T KOG4166|consen 538 VAN----PDAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAA 611 (675)
T ss_pred ccC----cccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHH
Confidence 875 89999999999999874 566 9999999999976666666 5887765421 1357887754
Q ss_pred -CCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018037 252 -DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (362)
Q Consensus 252 -~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GH 296 (362)
.|+++++|. .-+++.+.+++.+.- +||+|+|+.+..-...
T Consensus 612 AmGikalRV~--K~edL~~k~keflsT---kGPvLleV~v~~kehV 652 (675)
T KOG4166|consen 612 AMGIKALRVT--KKEDLREKIKEFLST---KGPVLLEVIVPHKEHV 652 (675)
T ss_pred hcCCchheee--hHHHHHHHHHHHhCC---CCCeEEEEEccCccce
Confidence 899999996 566888888877653 9999999998664443
No 131
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.12 E-value=1.5e-10 Score=134.16 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=87.1
Q ss_pred ccCCccccc--hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhC--CCCeEEEEEcCC-ccccccc--
Q 018037 166 YGGHGIVGA--QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--DLPAILVCENNH-YGMGTAE-- 238 (362)
Q Consensus 166 ~~~~g~lG~--~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~--~LPvIfVv~NN~-~gi~t~~-- 238 (362)
.++.|.+|. ++|.|+|+++|. ++.|||++|||++.+. ..| |.+|+++ ++|+++||.||+ ||+-...
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~-~~E-L~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~ 827 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD-TNG-LSILSQRIARKPMTILVINNHGGAIFSLLPI 827 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh-hhH-HHHhhcccCCCCEEEEEEeCCCcHhhhcCcc
Confidence 356789999 599999999884 6789999999998873 455 9999884 999876666665 6653210
Q ss_pred ----c-----c---ccCCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 239 ----W-----R---AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 239 ----~-----~---~~~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
. . ....+||.+ ++||+++.+|+ +++++.+++++|.+. ++|+|||+.|.|
T Consensus 828 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~~---~~p~lIEV~t~~ 890 (1655)
T PLN02980 828 AKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQVE---QMDCVVEVESSI 890 (1655)
T ss_pred CCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhcc---CCCEEEEEecCh
Confidence 0 0 012467877 45999999996 788998888877753 899999999854
No 132
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.08 E-value=7.4e-10 Score=111.02 Aligned_cols=116 Identities=22% Similarity=0.331 Sum_probs=88.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEE-cCC-ccccccccccc--
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNH-YGMGTAEWRAA-- 242 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~-NN~-~gi~t~~~~~~-- 242 (362)
|.+|+||-+++.|+++|++. +++.|+|+-||++++-. .+| +.++++++||||.||. ||+ ||..+..+.+.
T Consensus 427 GtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS-aME-~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e 500 (571)
T KOG1185|consen 427 GTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS-AME-LETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISE 500 (571)
T ss_pred ccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc-hhh-HHHHHHhcCCeEEEEecCCcccccCcccHHHHhh
Confidence 66899999999888888876 99999999999998763 556 8899999999876666 445 56544332211
Q ss_pred -------------CCchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 243 -------------KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 243 -------------~~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
.+.+|.. +++|..|+.|+ .++++..+++++.+. .++|++|.+..-+
T Consensus 501 ~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~--~~~psvINVlI~p 561 (571)
T KOG1185|consen 501 QDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQD--TDKPSVINVLIGP 561 (571)
T ss_pred cCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhc--CCCCeEEEEEecc
Confidence 2334544 56999999997 789999999888753 2699999998754
No 133
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=98.83 E-value=2e-07 Score=97.18 Aligned_cols=166 Identities=21% Similarity=0.212 Sum_probs=108.9
Q ss_pred cCCccccchhHHHHHHHHHHhhC-------CCCCeEEEEeCCcccccchHHHHHHHHHhCCCC-eEEEEEcCCccccccc
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYS-------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAE 238 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~-------~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vIfVv~NN~~gi~t~~ 238 (362)
..+.+||-+.-.|+=-|.-.||- .+++.|+||.|||.+.+++..+++.+|++++|. +||||+.|.-....|.
T Consensus 189 FpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpV 268 (887)
T COG2609 189 FPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPV 268 (887)
T ss_pred cCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcc
Confidence 45678888877787777777762 467899999999999999999999999999998 5799998876443332
Q ss_pred ccc---------------------------------------------cCCchHhh---h-c-------CC---------
Q 018037 239 WRA---------------------------------------------AKSPSYYK---R-G-------DY--------- 253 (362)
Q Consensus 239 ~~~---------------------------------------------~~~~~~~~---~-g-------~g--------- 253 (362)
... +..-+|.. + | ||
T Consensus 269 rgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLV 348 (887)
T COG2609 269 RGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALV 348 (887)
T ss_pred cCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHH
Confidence 100 00112211 0 0 11
Q ss_pred -------cceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHH
Q 018037 254 -------VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRK 326 (362)
Q Consensus 254 -------i~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~ 326 (362)
+..+.--|||+..|++|++.|.++ +++|++|-+.|.+.+|-..+-.+.. ..-..+.+ ..|-|..||+
T Consensus 349 a~~tD~diw~L~rGGHD~~ki~aA~~~A~~~--kg~PtvilA~TIKGyglg~~~eg~n--~aHq~kkm--~~~~l~~~Rd 422 (887)
T COG2609 349 ADMTDDDIWALNRGGHDPEKVYAAFKKAQEH--KGRPTVILAKTIKGYGLGEAAEGKN--IAHQVKKM--TPDQLKEFRD 422 (887)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHHhcC--CCCceEEEEeeeccccCchhhcccc--hhhhhhcC--CHHHHHHHHh
Confidence 111234699999999999999985 3589999999988887542211100 00011111 2344667777
Q ss_pred HHHHcCC-CCHHHHHH
Q 018037 327 LILAHDL-ATEKELKD 341 (362)
Q Consensus 327 ~L~~~g~-~t~~el~~ 341 (362)
++ |+ ++++|+++
T Consensus 423 r~---~ipvsd~e~e~ 435 (887)
T COG2609 423 RF---GIPVSDAELEE 435 (887)
T ss_pred hc---CCCCchhhhhc
Confidence 65 44 67777766
No 134
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.68 E-value=1.4e-07 Score=94.41 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=86.4
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEE-EcCCcccccccc------
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------ 239 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv-~NN~~gi~t~~~------ 239 (362)
.+.+.||+-+.-++|+.+| .+++-|++++|||++.+ .+..|.++..++..+++|+ +|-+||-..+.+
T Consensus 441 YgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~ 514 (617)
T COG3962 441 YGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGA 514 (617)
T ss_pred ecccccccccccccccccC----CCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcc
Confidence 3568999999999998744 58899999999999876 6666999999999986555 455688321111
Q ss_pred ------------cccCCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 240 ------------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 240 ------------~~~~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
......||++. +||....+|. +++++..|++.|++. .+++||+++|..
T Consensus 515 sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~~---~~ttvi~I~t~P 576 (617)
T COG3962 515 SFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKAS---DRTTVIVIDTDP 576 (617)
T ss_pred hhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHhC---CCCEEEEEecCC
Confidence 11234578874 5999999995 888887777766653 899999998743
No 135
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.56 E-value=2.4e-06 Score=82.86 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=84.7
Q ss_pred ccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccccc-
Q 018037 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAA- 242 (362)
Q Consensus 166 ~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~~- 242 (362)
...++..|-+.++|.|+.+|. ++..||++.|||. +..|--+ |--+...+..+++||.||. ||.+.-+...+
T Consensus 66 ~~~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~~~--l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tT 139 (294)
T COG1013 66 PWVHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGGNH--LIHALRRNHDITYIVVDNEVYGNTGGQASPTT 139 (294)
T ss_pred CceeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhhHH--HHHHHHcCCCeEEEEECCeecccCCCccCCCC
Confidence 455788999999999999997 5668999999995 6777433 7778899999988888887 77653332111
Q ss_pred ---------C------Cc-hHhh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018037 243 ---------K------SP-SYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (362)
Q Consensus 243 ---------~------~~-~~~~--~g~gi~g~-~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (362)
+ .+ |... .++|.+.+ ++---++.++.+.+++|+++ +||.||++.+
T Consensus 140 p~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~---~Gps~I~v~s 203 (294)
T COG1013 140 PKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH---KGPSFIDVLS 203 (294)
T ss_pred CCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc---cCCeEEEEec
Confidence 0 11 2222 24676554 55445799999999999987 8999999975
No 136
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.55 E-value=3.1e-07 Score=93.08 Aligned_cols=115 Identities=20% Similarity=0.181 Sum_probs=79.8
Q ss_pred cCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCe-EEEEEcCCccccccccccc---
Q 018037 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPA-ILVCENNHYGMGTAEWRAA--- 242 (362)
Q Consensus 167 ~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPv-IfVv~NN~~gi~t~~~~~~--- 242 (362)
..+|++|+.+|.++|+++|. +++++|.|+|||+++.- ++| +.+..+|+||. ||+++|++|-|........
T Consensus 412 ~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~qlT-vQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~ 485 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQLT-VQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYND 485 (561)
T ss_pred EEEeeccccchhhhhhhhcc----CCceEEEEecCccceee-HHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCccc
Confidence 44689999999999999987 56899999999999874 677 77778999985 7889999997754433311
Q ss_pred -CCchHhh--hcCC-----cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018037 243 -KSPSYYK--RGDY-----VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (362)
Q Consensus 243 -~~~~~~~--~g~g-----i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ty 291 (362)
..-+|.+ .++| ....+| ..-.+..++++.+... + ++|.+||+...
T Consensus 486 I~~Wd~~~l~~afg~~~gk~~~~~v--~~~~e~~~~~~~~~~~--~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 486 IQNWDYTALLEAFGAGEGKYETHKV--RTEEELVEAIKDATFE--KNDKIRLIEVILP 539 (561)
T ss_pred cccchHHHHHHhhcCccceeEEeee--ccchHHHHHHhhhhhc--ccCceEEEEEecC
Confidence 1124444 2333 233344 2234555666666532 4 78999999763
No 137
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.25 E-value=2.6e-06 Score=83.64 Aligned_cols=191 Identities=21% Similarity=0.254 Sum_probs=101.8
Q ss_pred ccccccccCcchHHHHHHHHhcCCC--CCEEEcCchhHHH--HHHc----C----------CC---HHHHHHHHhCCCCC
Q 018037 89 LVRGFCHLYDGQEAVAIGMEAGITK--KDSIITAYRDHCT--FLGR----G----------GT---LLEVFSELMGRKDG 147 (362)
Q Consensus 89 ~i~gf~h~~~GqEa~~vg~~~~l~~--~D~v~~~yR~h~~--~l~r----G----------~~---~~~~lael~g~~~g 147 (362)
+..|++-.+.|+-.+-+-+...+++ .|.++-.--|||. +++. | .+ +..++.++ +-
T Consensus 45 rllGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-S~--- 120 (379)
T PF09364_consen 45 RLLGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-SF--- 120 (379)
T ss_dssp S--S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-TS---
T ss_pred ccccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-CC---
Confidence 3567777778888777666666653 4566655567765 2221 1 11 22333333 11
Q ss_pred CCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCC-----CC
Q 018037 148 CSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-----LP 222 (362)
Q Consensus 148 ~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~-----LP 222 (362)
.-|-+.|....-.+-...-|-+|+.++.|.|++| .++|.+++|++|||++.+|- +|+-|. -|
T Consensus 121 ---PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGp------lA~sWh~~kflnP 187 (379)
T PF09364_consen 121 ---PGGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGP------LAASWHSNKFLNP 187 (379)
T ss_dssp ---TTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-T
T ss_pred ---CCCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCc------ccccccccceeCc
Confidence 1122456653333444456889999999999886 45999999999999999885 333442 12
Q ss_pred -----eEEEEEcCCcccccccccccC-CchHhh--hcCCcceEEEeCCCHHHHHHHHHHHHHH-----------hccC--
Q 018037 223 -----AILVCENNHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEH-----------ALKN-- 281 (362)
Q Consensus 223 -----vIfVv~NN~~gi~t~~~~~~~-~~~~~~--~g~gi~g~~VdG~D~~av~~a~~~A~~~-----------ar~~-- 281 (362)
|+=|+.=|+|-|+.++--... ..++.+ +|+|..-+.|+|.|+.++...+..+++. +|++
T Consensus 188 ~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~ 267 (379)
T PF09364_consen 188 ATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNP 267 (379)
T ss_dssp TTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--S
T ss_pred ccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 555666689988776543222 233444 5799888999999999987766555433 2331
Q ss_pred --CC--EEEEEEEecCCCC
Q 018037 282 --GP--MILEMDTYRYHGH 296 (362)
Q Consensus 282 --gP--~lIe~~tyR~~GH 296 (362)
.| -+|.+.|.+.++-
T Consensus 268 ~~~prwPmivlRtPKGWtg 286 (379)
T PF09364_consen 268 AYRPRWPMIVLRTPKGWTG 286 (379)
T ss_dssp S----EEEEEEE--TTTTS
T ss_pred CCCCCCcEEEEECCcccCC
Confidence 23 2666788776643
No 138
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.97 E-value=0.0014 Score=65.25 Aligned_cols=94 Identities=13% Similarity=0.044 Sum_probs=62.7
Q ss_pred CeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-cccccccccc-------c---------CCchHhh--hcC
Q 018037 193 TVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA-------A---------KSPSYYK--RGD 252 (362)
Q Consensus 193 ~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~~-------~---------~~~~~~~--~g~ 252 (362)
.-||++.|||. +..|.-+ |.-+...+.++++||.||. |+++.-+... + ...|... .++
T Consensus 152 ~~v~v~gGDG~~ydIG~~~--l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYGG--LDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccchhh--HHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 47999999997 5666322 6567778888877777776 7765322110 0 0112222 247
Q ss_pred CcceE-EEe-CCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 253 YVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 253 gi~g~-~Vd-G~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
|.+.+ ++. |-++.++.+++++|.++ +||.||++.+.
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~---~Gps~I~v~sP 267 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY---DGPSLIIAYSP 267 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC---CCCEEEEEEcc
Confidence 76654 443 35899999999999987 99999999863
No 139
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.57 E-value=0.00024 Score=74.25 Aligned_cols=112 Identities=26% Similarity=0.265 Sum_probs=80.9
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccc-cchHHHHHHHHHhCCCCeEEEEEcCCc-cccccccccc---
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--- 242 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~--- 242 (362)
.+-.+|.++++|-|++++. .+.+|+++|||++. .|. .+|..|...+.+++++|.+|.+ +|+..|....
T Consensus 426 ~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~ 498 (640)
T COG4231 426 TTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGV 498 (640)
T ss_pred hhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCccc
Confidence 3455777788888887764 37899999999954 554 3488899999999988888887 6876554321
Q ss_pred -----CCc--hH--hhhcCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018037 243 -----KSP--SY--YKRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMD 289 (362)
Q Consensus 243 -----~~~--~~--~~~g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (362)
..+ +. ..|+.|+..++ ||=.|+.++.+++++|+++ .||.+|.++
T Consensus 499 ~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~---~gpsViiak 552 (640)
T COG4231 499 AAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV---PGPSVIIAK 552 (640)
T ss_pred ccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC---CCceEEEEc
Confidence 011 11 12567776664 4557888999999998876 899998765
No 140
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.52 E-value=0.00021 Score=73.68 Aligned_cols=112 Identities=22% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCe-EEEEEcCCccccc--cc------
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPA-ILVCENNHYGMGT--AE------ 238 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPv-IfVv~NN~~gi~t--~~------ 238 (362)
.+||=|. ++-|+|++.|. .+.+|+++||=++--- .-+|-+......|+ |+|++||+-||-. ++
T Consensus 421 A~GIDG~-vSTA~Gi~~a~-----~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~ 492 (566)
T COG1165 421 ASGIDGT-VSTALGIARAT-----QKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPV 492 (566)
T ss_pred ccccchh-HHHHhhhhhhc-----CCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcch
Confidence 3444444 77899999875 3569999999995321 11255666777775 6778888877631 11
Q ss_pred -cccc---CCchHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018037 239 -WRAA---KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (362)
Q Consensus 239 -~~~~---~~~~~~~~--g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR 292 (362)
++.. ..-||... .|++...+++ .+.++.+++..+..+ .|-.+||++|.|
T Consensus 493 fe~~F~tPh~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~~---~g~~viEvkt~r 547 (566)
T COG1165 493 FERLFGTPHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWRR---SGTTVIEVKTDR 547 (566)
T ss_pred HHHhcCCCCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhccC---CCcEEEEEecCh
Confidence 1111 12356553 4888887775 566887777766543 788999999977
No 141
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.16 E-value=0.038 Score=63.10 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred CeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCC-ccccccccc-------cc---------CCchHhh--hcC
Q 018037 193 TVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-------AA---------KSPSYYK--RGD 252 (362)
Q Consensus 193 ~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~gi~t~~~~-------~~---------~~~~~~~--~g~ 252 (362)
.-+|++.|||. +..|.- .|.-+...+.++.+||.||. |+.+.-+.. .+ ...|... .++
T Consensus 952 ~sv~~~~GDG~~~diG~~--~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYG--GLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCcc--chHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 36999999996 455522 26667788999877777776 776432211 00 1112222 347
Q ss_pred CcceE-EEe-CCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018037 253 YVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (362)
Q Consensus 253 gi~g~-~Vd-G~D~~av~~a~~~A~~~ar~~gP~lIe~~ty 291 (362)
|.+.+ ++. |-++.++.+++++|.++ +||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~---~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY---DGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC---CCCEEEEEECC
Confidence 76654 554 56899999999999887 99999999864
No 142
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.0016 Score=68.78 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=73.7
Q ss_pred ccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHH-HhCCCC----eEEEEEc
Q 018037 155 SMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA-ALWDLP----AILVCEN 229 (362)
Q Consensus 155 s~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A-~~~~LP----vIfVv~N 229 (362)
+.|....-.|....-|-+|+++..|.|+++ ..+|-++.|++|||....|....+ ..+ .-++.+ |+=|..=
T Consensus 138 ~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplats-Whs~kf~np~~dGavLPIL~l 212 (793)
T COG3957 138 GSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATS-WHSNKFLNPARDGAVLPILHL 212 (793)
T ss_pred ccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccccc-cccccccCccccCceeeEEEe
Confidence 356654333555667899999999999987 458999999999997666642211 111 122333 5556777
Q ss_pred CCcccccccccccC-CchHhh--hcCCcceEEEeCCCHHHHHHH
Q 018037 230 NHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKVDGMDALAVKQA 270 (362)
Q Consensus 230 N~~gi~t~~~~~~~-~~~~~~--~g~gi~g~~VdG~D~~av~~a 270 (362)
|+|-|.-++.-.+. ..++.+ +|+|..-+.|+|.|+.++.+.
T Consensus 213 NGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~ 256 (793)
T COG3957 213 NGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQL 256 (793)
T ss_pred cceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhh
Confidence 89998876654332 233444 578888889999888885443
No 143
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.14 E-value=0.068 Score=45.79 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCCc
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYV 254 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~gi 254 (362)
..+|.|.+++. ...++++..|.|..+ ..+.+..|...++|+|+|+...... ....... ..+.....-.+
T Consensus 48 ~~~A~G~a~~~----~~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~~~~~q---~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----GPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAKQTFQ---SMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhccCccc---ccCHHHHHHHh
Confidence 45566776653 222333344888764 4566778888899999999766542 2111111 11111111123
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
+...+--.++.+..+.+.+|+..+.. .||++|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 33333234677788888888887777 89999976
No 144
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.12 E-value=0.023 Score=64.35 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=76.2
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCCc-cccccccccc--C
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--K 243 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~--~ 243 (362)
++..||+....++|.+... .++.+|+++|||.+ ..|.. +|.-|...+.+++++|.+|.. +|+..+.... .
T Consensus 479 ~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~~--al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGLL--AIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred eeeccCCcchhhceecccc----CCCcEEEEeccccchhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 4567888888899987652 34679999999994 56643 377888889998877666665 8876654322 2
Q ss_pred CchHhh--hcCCcceEEEeCCCHHHHH-----------------HHHHHHHHHhcc-CCCEEEEEE
Q 018037 244 SPSYYK--RGDYVPGLKVDGMDALAVK-----------------QACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 244 ~~~~~~--~g~gi~g~~VdG~D~~av~-----------------~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
..++.. ++.|+.-+.|-..|+.... +++++++ |+ +|+++|...
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~~ 615 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIYD 615 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 344544 5688877766444555553 3444444 35 889888665
No 145
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.08 E-value=0.021 Score=64.72 Aligned_cols=113 Identities=19% Similarity=0.109 Sum_probs=75.1
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcc-cccchHHHHHHHHHhCCCCeEEEEEcCCc-cccccccccc--C
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--K 243 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa-~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~--~ 243 (362)
+...||+....++|.+-+. .++.+|+++|||. +..|.. +|.-|...+.+++++|.+|.. +|+..+.... .
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~ 539 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVDGSIS 539 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCC
Confidence 3457888888889988763 3457999999999 456654 588888999999887777776 7877665432 1
Q ss_pred CchHhh--hcCCcceEEEeCCCHHH----------------HHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 244 SPSYYK--RGDYVPGLKVDGMDALA----------------VKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 244 ~~~~~~--~g~gi~g~~VdG~D~~a----------------v~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
.+.+.. ++.|+.-+.|-..||.. ..+++++++ |+ +||++|...
T Consensus 540 v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~~ 601 (1159)
T PRK13030 540 VPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIYD 601 (1159)
T ss_pred HHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 122222 46888777664334444 233444444 24 889888664
No 146
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.03 E-value=0.091 Score=46.54 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|-|.+.+. ++-.++++..|=|.+| ..-++..|...++|+|+|.-+.... .+... .+ ..|... +.+--
T Consensus 53 mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~~~-~q--~~d~~~~~~~~tk 123 (164)
T cd07039 53 AASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGTDY-FQ--EVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCCC-Cc--ccCHHHHHHHhhc
Confidence 455665543 3446677777888877 3456778889999999998765432 11110 01 112111 11222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
...+++ ++.++.+++.+|+..+.. .||+.|++
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 234564 788899999999988877 89999998
No 147
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=95.69 E-value=0.14 Score=44.53 Aligned_cols=100 Identities=22% Similarity=0.128 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhc-CC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DY 253 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g-~g 253 (362)
..+|.|.+.+ +. +++++..|-|.++ ....|..|...+.|+|+|+-+.... .+.+ .. ...++.... ++
T Consensus 54 ~~~A~g~~r~----~~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~--~~-~~~~~~~~~~~~ 122 (160)
T cd07034 54 AEAAIGASAA----GA-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLP--KP-DQSDLMAARYGG 122 (160)
T ss_pred HHHHHHHHhh----CC-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCC--Cc-CcHHHHHHHhCC
Confidence 3445555543 22 2777888888876 4456777888899999998765432 2211 00 011111111 22
Q ss_pred --cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 254 --VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 254 --i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
.+..++ .+++++.+.+++|+..++. ++|++|.+
T Consensus 123 ~~~~~~~~--~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 123 HPWPVLAP--SSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CCEEEEeC--CCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 334445 5899999999999999988 89999865
No 148
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=95.68 E-value=0.13 Score=44.43 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDY 253 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~g 253 (362)
...+|.|.+++. ++-.++++..|=|.++ ..+++..|...++|+|+|.-+.... ............++.. .+-
T Consensus 46 A~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~ 118 (155)
T cd07035 46 AVGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFR-PIT 118 (155)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCcccccCHHHHHH-HHh
Confidence 345566666653 1223344444566555 5677888889999999888665432 2211100011111111 122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEM 288 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~ 288 (362)
....++ .+++++.+.+.+|+..+.. +||+.|++
T Consensus 119 ~~~~~i--~~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 119 KWAYRV--TSPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred ceEEEc--CCHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 224555 4788999999999998876 58999986
No 149
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.17 E-value=0.078 Score=60.14 Aligned_cols=116 Identities=16% Similarity=0.109 Sum_probs=72.7
Q ss_pred CCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHHHHHhCCCCeEEEEEcCCc-cccccccccc--C
Q 018037 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--K 243 (362)
Q Consensus 168 ~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~--~ 243 (362)
+...||+....++|.+-.. .++.+|+++|||.+ ..|.. +|.-|...+.+++++|.+|.. +|+..+.... .
T Consensus 493 ~~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~~--alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~ 566 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGLL--AIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLT 566 (1186)
T ss_pred eeeccCcchhhheeecccC----CCCCEEEEeccccchhcCHH--HHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCC
Confidence 3466888888888887653 34579999999995 46643 378888889998877776665 8876665322 1
Q ss_pred CchHhh--hcCCcceEEEeCCCHHHHH--------------HHHHHHHHHhcc-CCCEEEEEE
Q 018037 244 SPSYYK--RGDYVPGLKVDGMDALAVK--------------QACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 244 ~~~~~~--~g~gi~g~~VdG~D~~av~--------------~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
.+.+.. ++.|+.-+.|-..|+..+. +.+....+..|+ +|+++|...
T Consensus 567 v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~ 629 (1186)
T PRK13029 567 VPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYD 629 (1186)
T ss_pred HHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 122222 6788877665323443332 223333333335 888888654
No 150
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=94.93 E-value=0.58 Score=41.26 Aligned_cols=103 Identities=10% Similarity=0.045 Sum_probs=65.3
Q ss_pred cchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHH-hCCCCeEEEEEcCCc-ccccccccccCCchHhh-
Q 018037 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAA-LWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK- 249 (362)
Q Consensus 173 G~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~-~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~- 249 (362)
+.+..+|.|..++ .+..++|+.+=|.. ...-+|..|. ..++|+|+|+-.-+. +-..+..... ..+..
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~--g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPM--GRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccch--hhhhHH
Confidence 4555666666643 34566788777743 4566677888 999999999854443 2111111000 01111
Q ss_pred --hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 250 --~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
...+++...++ +++++ .++.+|+..+.+ ++|+.|-+
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 11456777774 68899 999999999988 89998866
No 151
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=94.83 E-value=0.14 Score=45.34 Aligned_cols=106 Identities=19% Similarity=0.097 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~ 252 (362)
..-+|.|.+++. ++-.++++..|=|.+| ..-++..|...+.|+|+|+-+-..........+. ..|... +.+
T Consensus 51 A~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~~d~~~~~~~~ 123 (172)
T PF02776_consen 51 AAFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQ-EIDQQSLFRPV 123 (172)
T ss_dssp HHHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTS-STHHHHHHGGG
T ss_pred hHHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhccccccc-chhhcchhccc
Confidence 345667776654 2334455555556655 3345666888999999998776543211111110 112222 233
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHh-cc-CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHA-LK-NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~a-r~-~gP~lIe~~ 289 (362)
.-...+++ +++++.+++++|+..+ .. +||++|++-
T Consensus 124 ~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 124 TKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp SSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred cchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 44456774 6778888889998888 45 899999984
No 152
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=94.65 E-value=0.39 Score=41.97 Aligned_cols=99 Identities=18% Similarity=0.241 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHH-HHHhCCCCeEEEEEcCCccc--ccccccccCCchHhhhcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN-IAALWDLPAILVCENNHYGM--GTAEWRAAKSPSYYKRGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn-~A~~~~LPvIfVv~NN~~gi--~t~~~~~~~~~~~~~~g~ 252 (362)
+++|.|+|+. + .++++..+ ..+.+ ..++.+. .++.+++|+++++...+++. ..+++.. ..++.-. -
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~~~a~~-~ 120 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IEDIALL-R 120 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HHHHHHh-c
Confidence 3567777753 2 34555555 44433 3445555 89999999999988766543 2222211 1122211 2
Q ss_pred CcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 253 YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 253 gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.+|++.| .-.|+.+++..++.|++. ++|++|-+
T Consensus 121 ~iPg~~v~~Ps~~~~~~~ll~~a~~~---~~P~~irl 154 (156)
T cd07033 121 AIPNMTVLRPADANETAAALEAALEY---DGPVYIRL 154 (156)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHhC---CCCEEEEe
Confidence 4666654 446888999999998865 77998854
No 153
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=94.50 E-value=0.38 Score=48.41 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh-h-c-
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-R-G- 251 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~-~-g- 251 (362)
.+.+|+|+++|- .++++..-=+++. -.+|.+-+++-.++|+|+++.+.. |.++.........|+.. + +
T Consensus 60 A~~~a~GAs~aG------~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~-gp~tg~p~~~~q~D~~~~~~~~ 130 (376)
T PRK08659 60 SMAAVIGASWAG------AKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRG-GPSTGQPTKPAQGDMMQARWGT 130 (376)
T ss_pred HHHHHHhHHhhC------CCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecC-CCCCCCCCCcCcHHHHHHhccc
Confidence 467788888863 3455443222222 357889999999999888777754 22221111111223322 2 1
Q ss_pred CC-cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018037 252 DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 252 ~g-i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~ 299 (362)
+| ++-+.+.-.|+.++++....|++.+.+ +-|++|-...| -+|+..
T Consensus 131 hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 131 HGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 22 454667778999999999999999888 89999998883 778753
No 154
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=94.09 E-value=0.45 Score=47.45 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccc--ccccccCCchHhh-h-
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYK-R- 250 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t--~~~~~~~~~~~~~-~- 250 (362)
.+.+|+|+++| +.++++.+-|+.+. -.+|.|.+|+-..+|+++++.+-. +-++ .+..+ ...+.. +
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g~t~~eq--~D~~~~~~~ 128 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLGNIQPSQ--GDYFQAVKG 128 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCCCCcchh--HHHHHHHhc
Confidence 46778888886 34677777666654 378999999999999888777654 3222 11111 112222 2
Q ss_pred -cCC-cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018037 251 -GDY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 251 -g~g-i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~ 298 (362)
|.| .+.+..+-.|+.++++...+|++.+.+ .-|+++-..++ -+|+.
T Consensus 129 ~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (352)
T PRK07119 129 GGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMM 177 (352)
T ss_pred CCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCce
Confidence 222 344566778999999999999999888 89999998884 36654
No 155
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=93.94 E-value=0.71 Score=40.69 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-ccccc--ccccCCc---hHhh
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRAAKSP---SYYK 249 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~--~~~~~~~---~~~~ 249 (362)
.-+|-|.+.+. +-.++++..|=|.+| ..-++..|...+.|+|+|+-+.... .++.. ....... |...
T Consensus 48 ~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (162)
T cd07038 48 GYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK 120 (162)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHH
Confidence 34556666543 234555555777776 4456777889999999998765432 11111 1000001 1111
Q ss_pred --hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 250 --~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
+.+.-...+| .+++++.+.+++|+..+.. +||++|++
T Consensus 121 ~~~~~tk~~~~v--~~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 121 MFEEITCAAARL--TDPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHhheeEEEEe--CCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 1122233556 3788899999999988888 89999986
No 156
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=93.41 E-value=0.47 Score=42.04 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|-|.+.+. ++-.++++..|=|.+| ..-++..|...+.|+|+|+-+-.... .... .+. .|... +..
T Consensus 48 ~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q~--~d~~~l~~~v 118 (162)
T cd07037 48 AFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGTGA-NQT--IDQVGLFGDY 118 (162)
T ss_pred HHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCCCC-Ccc--cchhhhccce
Confidence 34566666543 3445666666777776 33457778899999999987644321 1110 010 11111 001
Q ss_pred CcceEEEeCCCHHH------HHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALA------VKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~a------v~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
--...+|. ++++ +.+.+.+|+..+.. .||++|++-
T Consensus 119 tk~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 119 VRWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eeEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 11123342 3334 67778888877766 599999873
No 157
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=92.22 E-value=0.54 Score=44.10 Aligned_cols=108 Identities=21% Similarity=0.148 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc---cccccccccCCchH-hhhc
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG---MGTAEWRAAKSPSY-YKRG 251 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g---i~t~~~~~~~~~~~-~~~g 251 (362)
+.+++|++++- .+...+.-|-|= + ...|.|-+++-.++|+|+++.|-.-. +.+..+ ..|+ ..+-
T Consensus 49 ~~~~~GAs~aG-----~ra~t~ts~~Gl-~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~~----q~D~~~~~d 116 (230)
T PF01855_consen 49 MEAAIGASAAG-----ARAMTATSGPGL-N--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQPE----QDDLMAARD 116 (230)
T ss_dssp HHHHHHHHHTT-------EEEEEECCHH-H--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB-----SHHHHHTTT
T ss_pred HHHHHHHHhcC-----CceEEeecCCcc-c--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcCC----hhHHHHHHh
Confidence 56677777753 133334444333 2 25577889999999988877764431 222222 1233 3344
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018037 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 252 ~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~ 298 (362)
++++ .+...|+.++++....|.+.+.+ .-|+++-...++. .|+.
T Consensus 117 ~~~~--vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 117 SGWI--VLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp SS-E--EEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred cCeE--EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 5664 44556899999999999999988 9999999988875 3554
No 158
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=92.21 E-value=0.99 Score=45.46 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC---cccccccccccCCchHhhh-
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH---YGMGTAEWRAAKSPSYYKR- 250 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~---~gi~t~~~~~~~~~~~~~~- 250 (362)
.+.+|+|+++|- .++++.+-=+++. -.+|.+-+++-..+|+++++.+-. -|+-+..++. .+.+...
T Consensus 59 A~~~a~GAs~aG------~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~--D~~~~~~~ 128 (375)
T PRK09627 59 GISVALGASMSG------VKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQG--DVNQAKNP 128 (375)
T ss_pred HHHHHHHHHhhC------CCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchH--HHHHHhcC
Confidence 366788888763 3444444333332 257889999999999987776643 2332222111 1112221
Q ss_pred cCC-cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018037 251 GDY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 251 g~g-i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~ 299 (362)
++| .+-+.+.-.|+.++++...+|++.+.+ .-|++|-... +. +|+..
T Consensus 129 ~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~~ 177 (375)
T PRK09627 129 THGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMYG 177 (375)
T ss_pred CCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCee
Confidence 222 334566778999999999999999888 9999998888 33 77653
No 159
>PRK08611 pyruvate oxidase; Provisional
Probab=92.18 E-value=1.3 Score=47.01 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
-+|.|.+.+ .++-.++++..|=|.+| ..-++..|...+.|+|+|+-............+ ..|... +.+.-
T Consensus 57 ~mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q--~~d~~~l~~~itk 128 (576)
T PRK08611 57 LAAAAYAKL---TGKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQ--EVNLEKMFEDVAV 128 (576)
T ss_pred HHHHHHHHH---hCCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCCCCcc--ccCHHHHhhcccc
Confidence 445666544 34556777777998887 345577788999999999876543211111111 112222 11222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
...+| .+++++.+++.+|+..+.. .||++|++-
T Consensus 129 ~~~~v--~~~~~~~~~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 129 YNHQI--MSAENLPEIVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred eeEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 23455 4788899999999888877 899999985
No 160
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=91.92 E-value=1 Score=40.12 Aligned_cols=98 Identities=21% Similarity=0.165 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHH-HHHHhC--------CCCeEEEEEcCCcccccccccccCCch
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALW--------DLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Eal-n~A~~~--------~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
++.|.|+|+. +.++|+.+.=+.+.. -.+|-+ +-++.+ ++||++++..-+++...+++ ...+
T Consensus 57 vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th---s~~~ 126 (167)
T cd07036 57 VGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH---SQSL 126 (167)
T ss_pred HHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh---hhhH
Confidence 4566777763 234554322233332 233333 334443 69999998766655333321 1222
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
. +.--.+|++.| .=.|+.+.+..++.++++ ++|+++-
T Consensus 127 ~-a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~---~~P~~~~ 164 (167)
T cd07036 127 E-AWFAHIPGLKVVAPSTPYDAKGLLKAAIRD---DDPVIFL 164 (167)
T ss_pred H-HHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 2 21124566544 346888999999888875 8998873
No 161
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=91.60 E-value=1.6 Score=45.93 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhh--cCCcc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVP 255 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi~ 255 (362)
+|.|.|.+ .++-.+|++..|=|.+| ..-++..|..-+.|+|+|+-.-..........+ ..|.... .+-..
T Consensus 54 mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~vtk~ 125 (549)
T PRK06457 54 AASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQ--EVNLTKLFDDVAVF 125 (549)
T ss_pred HHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccCCCccc--ccchhhhhccceeE
Confidence 45565554 34556677777888887 345677888999999999865332210000001 1121111 11111
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
..+| .+++++...+++|+..+.. .||+.|++-.
T Consensus 126 ~~~v--~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 126 NQIL--INPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 2345 4788888899999888877 8999999963
No 162
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=91.33 E-value=2.1 Score=43.32 Aligned_cols=111 Identities=16% Similarity=0.094 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh-hcCC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGDY 253 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~-~g~g 253 (362)
.+.+|+|+++|- .++++.+--.+++ ..+|.|-+|+-.++|+|+++.|-... ++........|+.. +.-|
T Consensus 61 A~~~aiGAs~aG------aRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~~~d~g 130 (390)
T PRK08366 61 AMAACIGASAAG------ARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLAQRDTG 130 (390)
T ss_pred HHHHHHHHHhhC------CCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHHHhhcC
Confidence 367788888863 3455544333333 36899999999999988777654332 22222111223322 2223
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~ 298 (362)
. +..-..|+.++++....|++.+.+ .-|+++-...|+.. |..
T Consensus 131 ~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~ 173 (390)
T PRK08366 131 W--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTY 173 (390)
T ss_pred E--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-ccc
Confidence 3 333447899999999999999888 99999999888854 443
No 163
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.63 E-value=1.8 Score=45.43 Aligned_cols=104 Identities=21% Similarity=0.172 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ..-++..|..-+.|+|+|+-.-... ++... .+ ..|... +.+
T Consensus 51 ~~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q--~~d~~~~~~~~ 121 (548)
T PRK08978 51 AMAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGTDA-FQ--EIDVLGLSLAC 121 (548)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCC-Cc--ccchhccccCc
Confidence 34455665543 4556777777888887 3456778889999999987543321 11110 01 011111 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+|+ +++++...+++|+..++. .||+.|++-.
T Consensus 122 tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 122 TKHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 12235664 788999999999988877 4999999863
No 164
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=90.57 E-value=2 Score=45.19 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
-+|-|.+.+. ++-.++++..|=|.+|. --++..|...+.|+|+|+-.................|... +.+--
T Consensus 54 ~mAdgyar~t---g~~gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk 127 (554)
T TIGR03254 54 YAAAAAGFLT---QKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAK 127 (554)
T ss_pred HHHHHHHHHh---CCCEEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhe
Confidence 3455655543 44567777779998873 3457788899999999986544321000000000112221 11222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+|+ +++++.+.+.+|+..+.+ .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 128 AAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 235664 788999999999888876 5899999863
No 165
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.53 E-value=2 Score=45.49 Aligned_cols=104 Identities=18% Similarity=0.158 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
-+|.|.+.+. ++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-..........+ ..|... +.+-.
T Consensus 56 ~mAdgYar~t---g~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~~tk 127 (574)
T PRK07979 56 HMADGLARAT---GEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIGYDAFQ--ECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHHHh---CCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccCCCCCc--eecHHHHhhcccc
Confidence 3555665543 4556778888999887 334577788999999999865332110000001 112222 11222
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+| ++++++...+++|+..+.. .||++|++-.
T Consensus 128 ~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 128 HSFLV--KQTEDIPQVLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 23556 4799999999999988877 5999999864
No 166
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=90.47 E-value=1.8 Score=45.96 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHh-hh-c-
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYY-KR-G- 251 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~-~~-g- 251 (362)
.+.+++|+++|- .++++.+-=.+++ ..+|.|.+|+-..+|+|+++.|.. |.++.....+...|+. .+ +
T Consensus 249 A~~~a~GAs~aG------~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYAG------ARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhcC------CceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHHHHHhcCC
Confidence 366788888763 3444444333333 478999999999999877766543 3332211111112222 22 2
Q ss_pred CC-cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018037 252 DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (362)
Q Consensus 252 ~g-i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR 292 (362)
.| .+-+.+.-.|+.++++...+|++.+.+ .-|+++-...|.
T Consensus 320 hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 320 HGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 11 344566778999999999999999888 999999999885
No 167
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=90.46 E-value=2.8 Score=42.52 Aligned_cols=111 Identities=17% Similarity=0.102 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh-hcCC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGDY 253 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~-~g~g 253 (362)
.+.+++|+++|- .++++.+--.+++ ..+|.|.+|+-.++|+++++-|-..+- +........|+.. +..|
T Consensus 62 A~~~~~GAs~aG------aRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~~~rd~g 131 (394)
T PRK08367 62 AISACVGASAAG------VRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTISQRDTG 131 (394)
T ss_pred HHHHHHHHHhhC------CCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHHhccccC
Confidence 367788888763 3444444222222 368999999999999998886654442 2221111123332 3344
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc---CCCEEEEEEEecCCCCCC
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYRYHGHSM 298 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~---~gP~lIe~~tyR~~GHs~ 298 (362)
. +.+-..|+.++++-...|.+.+.+ .-|+++-...||. +|+.
T Consensus 132 ~--~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~ 176 (394)
T PRK08367 132 W--MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTV 176 (394)
T ss_pred e--EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCcc
Confidence 3 333447999999999999988874 4799999999985 5543
No 168
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=90.25 E-value=2.2 Score=45.36 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.+.+. ++-.++++..|=|++| ..-++..|...+.|+|+|+-.-... +... ..+ ..|... +.+-
T Consensus 57 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q--~~d~~~l~~~~t 127 (588)
T PRK07525 57 HMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIGQG-GFQ--EAEQMPMFEDMT 127 (588)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhhe
Confidence 3455555443 3456777777998877 3345777889999999998322211 1100 000 011111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
-...+| .+++++.+.+.+|+..++. .||+.|++-
T Consensus 128 k~~~~i--~~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 128 KYQEEV--RDPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred eEEEEC--CCHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 122455 4788999999999988888 899999986
No 169
>PRK07524 hypothetical protein; Provisional
Probab=90.17 E-value=2.7 Score=43.99 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.|.. .++-.++++..|=|.+| ..-++.-|...+.|+|+|+-..... .+..........|... +.+
T Consensus 52 ~~mAdgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~ 125 (535)
T PRK07524 52 GFMADGYARV---SGKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGV 125 (535)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhh
Confidence 3445555543 34446777777888887 3456778889999999988544321 1110000000012221 112
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
--...+| .+++++.+.+.+|+..+++ .||++|++-
T Consensus 126 tk~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 126 AAFSHTL--MSAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred ceeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 2223455 4789999999999998886 699999986
No 170
>PRK08322 acetolactate synthase; Reviewed
Probab=89.90 E-value=2.4 Score=44.47 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhh--cCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~--g~gi 254 (362)
-+|.|.|.+ .++-.++++..|=|.+| ..-++.-|...+.|+|+|+-+-..........+ ..|.... .+--
T Consensus 52 ~~A~gyar~---tg~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q--~~d~~~~~~~~tk 123 (547)
T PRK08322 52 FMAATYGRL---TGKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQ--IVDVVAMMAPLTK 123 (547)
T ss_pred HHHHHHHHh---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccCCCccc--cccHHHHhhhhee
Confidence 445566554 24455667777888887 345577788999999999854332111110111 1122111 1111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+| ++++++.+.+.+|+..+.. .||++|++-.
T Consensus 124 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 124 WTRQI--VSPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 22455 4788999999999988877 5899999864
No 171
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=89.89 E-value=2.5 Score=45.09 Aligned_cols=103 Identities=21% Similarity=0.199 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|.|.|.+. ++-.++++..|=|.+| ..-++..|..-++|+|+|+-.-... +.... .+ ..|.... .+-
T Consensus 83 ~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~-~q--~~d~~~l~~~~t 153 (612)
T PRK07789 83 HAAEGYAQAT---GRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIGTDA-FQ--EADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCc-Cc--ccchhhhhhcce
Confidence 3455655543 4456677777888887 3455777889999999998543321 11100 00 0122111 111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| .+++++.+.+.+|+..++. .||++|++-.
T Consensus 154 k~s~~v--~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 154 KHNFLV--TDADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred eEEEEc--CCHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 223455 4888999999999988877 5999999864
No 172
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=89.84 E-value=1.8 Score=43.34 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=64.6
Q ss_pred ccchhHHHHHHHHHHhhCCCCCeEEEEeCCccccc-chHHHHHHHHHhCCCCeEEEEEcCCc-ccc-cccccccCCchHh
Q 018037 172 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNHY-GMG-TAEWRAAKSPSYY 248 (362)
Q Consensus 172 lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~-G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~-t~~~~~~~~~~~~ 248 (362)
=|.++++|.|+.+|- +++.++++=-.+++. -...-+|+-...+++|++++|-.-+. |.. -+++... . ...
T Consensus 35 E~~av~iaaG~~lat-----G~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~-G-~~t 107 (361)
T TIGR03297 35 EGAAVGLAAGAYLAT-----GKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQ-G-RIT 107 (361)
T ss_pred chHHHHHHHHHHHhc-----CCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHH-h-HHH
Confidence 467788888988872 334444432222211 01222233356789999998876664 322 1221111 0 111
Q ss_pred h---hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 249 K---RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 249 ~---~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
. ...++|...++ .+.++..+.+..|++++.+ ++|+.|-+.
T Consensus 108 ~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 108 LSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 1 24789988885 3566778888888888877 999877664
No 173
>PRK07586 hypothetical protein; Validated
Probab=89.72 E-value=2.4 Score=44.07 Aligned_cols=103 Identities=15% Similarity=-0.033 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|-|.|.+ .++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-... ..... .+ ..|.... .+-
T Consensus 53 ~mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~-~q--~~d~~~~~~~vt 123 (514)
T PRK07586 53 GAADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRKYDA-PL--TSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccCCCc-cc--ccchhhhhcccc
Confidence 345565554 34446677778888876 3344667889999999998653321 11100 00 1122221 111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| .+++++.+.+++|+..+.. .||++|++-.
T Consensus 124 k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 124 GWVRRS--ESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred ceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 122445 4788999999999988887 5999999864
No 174
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.65 E-value=2.5 Score=44.76 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.|... ++-.++++..|=|.+| ..-++..|...+.|+|+|+-..... .... ..+ ..|... +.+-
T Consensus 66 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~~d~~~l~~~it 136 (570)
T PRK06725 66 HAAEGYARAS---GKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIGKD-GFQ--EADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCcccccCC-CCc--ccchhhhhhccc
Confidence 3566666543 4456777778888877 3445777888899999988543321 1110 000 112222 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
....+|+ +++++.+.+++|+..++. .||+.|++-.
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 2234563 788999999999998887 5999999863
No 175
>PRK08266 hypothetical protein; Provisional
Probab=89.64 E-value=3 Score=43.67 Aligned_cols=105 Identities=18% Similarity=0.102 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccC-CchHhh--hcCC
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAK-SPSYYK--RGDY 253 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~-~~~~~~--~g~g 253 (362)
+|.|.+.+. ++-.++++..|=|.+| ..-++.-|..-+.|+|+|+-.-.. .+.... .+.. ..|... +.+-
T Consensus 58 ~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 58 MAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGR-GHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCC-CcceecccHhhHHhhhc
Confidence 566666543 3445666777888887 345577788999999999854221 111100 0000 012211 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ty 291 (362)
-...+|+ +++++.+.+++|+..+.. .||++|++-..
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 2235564 788888899999988776 69999999753
No 176
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=89.58 E-value=2.9 Score=44.21 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.+.+. ++-.++++..|=|++|. .-++..|...+.|+|+|+-.-.... ..... .....|... +.+-
T Consensus 61 ~mAdgyar~t---g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~-~~q~~d~~~~~~~~t 133 (569)
T PRK09259 61 NAAAAAGFLT---QKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQQG-DYEELDQLNAAKPFC 133 (569)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccccCC-Cccccchhhhhhhhe
Confidence 3455555442 34456777778888873 3457788899999999986433211 00000 000112211 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
-...+| ++++++.+.+.+|+..+.. .||+.|++-
T Consensus 134 k~s~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 134 KAAFRV--NRAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eeeEEc--CCHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 223456 4788999999999988876 599999986
No 177
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.54 E-value=2.6 Score=44.55 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCcc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVP 255 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi~ 255 (362)
+|-|.|.+ .++-.++++..|=|.+| ..-++..|..-+.|||+|+-............+ ..|... +.+--.
T Consensus 57 mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQ--ETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCCCccc--ccchhhhhhcccee
Confidence 55666554 34456777777888887 345677888999999999864433211000001 112221 111122
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ty 291 (362)
..+|+ ++.++.+.+++|+..+.+ .||+.|++-..
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 34564 788999999999988876 59999998643
No 178
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=89.53 E-value=2.8 Score=44.33 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.|.+. ++-.++++..|=|++| ..-++..|...++|||+|+-.-... ..... -+ ..|... +..-
T Consensus 63 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-~Q--~~d~~~l~~~vt 133 (578)
T PRK06112 63 AMADGYARVS---GKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTDRNA-FQ--ELDHIALFQSCT 133 (578)
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCC-cc--ccChhhhhcccc
Confidence 3455666543 4556677777888877 3456777889999999998542221 11000 00 011111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| .+++++.+.+.+|+..++. .||+.|++-.
T Consensus 134 k~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 134 KWVRRV--TVAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred ceEEEe--CCHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 223455 4788999999999988877 4999999863
No 179
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=89.48 E-value=3 Score=44.51 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.|.. .++-.++++..|=|++| ..-+|..|..-+.|||+|+-+-... +.+... + ..|... +.+-
T Consensus 74 ~aA~gyar~---tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~-Q--e~d~~~~~~~vt 144 (616)
T PRK07418 74 HAADGYARA---TGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAIGTDAF-Q--ETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCCCCc-c--cccHHHHhhhcc
Confidence 345555543 34556777777999887 3345778899999999988643321 111100 0 112211 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-C-CCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-N-GPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~-gP~lIe~~t 290 (362)
....+|+ +++++..++.+|+..+.+ + ||++|++-.
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecch
Confidence 2234564 788999999999998877 4 999998863
No 180
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=89.40 E-value=2.8 Score=44.20 Aligned_cols=103 Identities=20% Similarity=0.105 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.|.. .+.-.++++..|=|.+| ..-++..|...+.|||+|.-.-.... .... .+ ..|... +.+
T Consensus 56 ~~~Adgyar~---tg~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-~q--~~d~~~i~~~~ 126 (572)
T PRK06456 56 AHAADGYARA---SGVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGKMA-FQ--EADAMGVFENV 126 (572)
T ss_pred HHHHHHHHHh---hCCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCCCC-cc--ccchhhhhhcc
Confidence 3445565554 23445666677998887 33457778899999999875433211 1100 01 011111 112
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
--...+| ++++++.+.+.+|+..+.. .||+.|++-
T Consensus 127 tk~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 127 TKYVIGI--KRIDEIPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred ceeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 2223455 4788999999999988877 599999986
No 181
>PRK11269 glyoxylate carboligase; Provisional
Probab=89.37 E-value=3.1 Score=44.21 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
-+|.|.|.+.. ++-.++++..|=|++| ..-++..|..-+.|+|+|+-+-..........+ ..|... +.+-.
T Consensus 56 ~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q--~~d~~~l~~~itk 128 (591)
T PRK11269 56 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHKEDFQ--AVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCccc--ccChhhHhhccee
Confidence 44555554320 3445667777888887 334577788999999999865443211100001 112221 11112
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+| .+++++..++++|+..++. .||+.|++-.
T Consensus 129 ~s~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 129 WAVTV--REPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred EEEEc--CCHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 23455 4788999999999998887 5999999863
No 182
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=89.32 E-value=2.4 Score=45.51 Aligned_cols=109 Identities=12% Similarity=0.159 Sum_probs=62.9
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCc
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSP 245 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~ 245 (362)
..|+-.+.+ ++|.|+|++ .-+++++++ +.+-+-.+-.-.+.++..++||+|++...++. ...+++.+ ..
T Consensus 356 d~GIaEq~~vg~AaGlA~~-----G~~Pvv~~~--a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~ 426 (617)
T TIGR00204 356 DVAIAEQHAVTFAAGMAIE-----GYKPFVAIY--STFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AF 426 (617)
T ss_pred cCCccHHHHHHHHHHHHHC-----CCEEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--ch
Confidence 345544443 567777752 224444444 45555333333466789999999999877763 21222222 12
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
|+.- --.+|++.| .=.|+.+++..++.|++. .++|++|-.
T Consensus 427 dia~-lr~iPgl~V~~Psd~~e~~~~l~~a~~~--~~~Pv~ir~ 467 (617)
T TIGR00204 427 DISY-LRCIPNMVIMAPSDENELRQMLYTGYHY--DDGPIAVRY 467 (617)
T ss_pred HHHH-HhcCCCcEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 3221 124666654 335788888888888763 149998844
No 183
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=89.21 E-value=2.8 Score=44.14 Aligned_cols=104 Identities=21% Similarity=0.154 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
-+|.|.|.+. ++-.++++..|=|.+| ..-++.-|...+.|+|+|.-.-..........+ ..|... +.+--
T Consensus 65 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~~~~~~tk 136 (564)
T PRK08155 65 FIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIGTDAFQ--EVDTYGISIPITK 136 (564)
T ss_pred HHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCcccccCCCcc--ccchhhhhhccce
Confidence 4466666543 3445666667888877 334577788999999999754332110000000 011111 11111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+| .+++++...+.+|+..++. .||+.|++-.
T Consensus 137 ~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~ 172 (564)
T PRK08155 137 HNYLV--RDIEELPQVISDAFRIAQSGRPGPVWIDIPK 172 (564)
T ss_pred EEEEc--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 23455 4788999999999988876 4999999953
No 184
>PLN02470 acetolactate synthase
Probab=89.07 E-value=2.7 Score=44.54 Aligned_cols=104 Identities=23% Similarity=0.213 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ..-++..|...+.|+|+|.-.-... +.... -+ ..|... +.+
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~-~q--~~d~~~l~~~~ 134 (585)
T PLN02470 64 VFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIGTDA-FQ--ETPIVEVTRSI 134 (585)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcCCCc-Cc--ccchhhhhhhh
Confidence 34466666543 4456777788888887 3455777889999999987543321 11100 00 011111 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+| .+++++.+.+.+|+..+.. .||+.|++-.
T Consensus 135 tk~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 135 TKHNYLV--MDVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred eEEEEEc--CCHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 1223455 4788999999999998887 5999999964
No 185
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=89.05 E-value=2.4 Score=43.99 Aligned_cols=98 Identities=26% Similarity=0.219 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEe-CCcccccchHHHHHHHHH--------hCCCCeEEEEEcCCcccccccccccCCch
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEALNIAA--------LWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~-GDGa~~~G~~~Ealn~A~--------~~~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
+++|+|+|++ .-++++.++ .+-. +=.+..-.|-++ .+++||+|+..|.++..... +. +.+
T Consensus 202 vg~AaGlA~~-----G~rPiv~~~~~~f~--~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~-hh---s~~ 270 (464)
T PRK11892 202 AGIGVGAAFA-----GLKPIVEFMTFNFA--MQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA-QH---SQD 270 (464)
T ss_pred HHHHHHHHhC-----CCEEEEEEehHHHH--HHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC-cc---ccC
Confidence 4667888774 224454443 2322 112333456667 89999999988877532111 11 112
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
+.+.--.+|++.| .=.|+.+.+..++.|++. ++|++|-
T Consensus 271 d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~~---~~Pv~il 309 (464)
T PRK11892 271 YAAWYSHIPGLKVVAPYSAADAKGLLKAAIRD---PNPVIFL 309 (464)
T ss_pred HHHHHhhCCCCEEEEeCCHHHHHHHHHHHhhC---CCcEEEE
Confidence 2222235676655 335788888888888854 8999863
No 186
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=88.94 E-value=3 Score=44.15 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.+.. .++-.++++..|=|.+| ..-++..|...+.|+|+|.-.-.. .+.... .+ ..|... +.+-
T Consensus 53 ~~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~~~~~-~Q--~~d~~~l~~~vt 123 (579)
T TIGR03457 53 HMADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTIGLGG-FQ--EADQLPMFQEFT 123 (579)
T ss_pred HHHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccCCCCC-Cc--ccchhhhhhcce
Confidence 345555543 24456677777888887 334577788999999998732211 111100 00 011111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
-...+| .+++++.+.+.+|+..+.. +||++|++-
T Consensus 124 k~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 124 KYQGHV--RHPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred eEEEec--CCHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 122445 4788899999999988888 899999985
No 187
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=88.88 E-value=3.5 Score=43.61 Aligned_cols=104 Identities=20% Similarity=0.193 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ..-++.-|..-+.|+|+|.-..... +.... .+ ..|.... .+
T Consensus 66 ~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~-~q--~~d~~~l~~~~ 136 (571)
T PRK07710 66 IHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGSDA-FQ--EADIMGITMPV 136 (571)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCCCC-cc--ccchhhhhhcc
Confidence 34566666543 3445677777888877 3445777889999999987644322 11110 01 0111111 11
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-....+| .+++++...+++|+..++. .||+.|++-.
T Consensus 137 tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 137 TKHNYQV--RKASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred cceEEec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 1122345 4788999999999988877 5999999864
No 188
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=88.75 E-value=3.4 Score=43.74 Aligned_cols=103 Identities=18% Similarity=0.117 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|-|.+. ..++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-.. .+.... .+ ..|... +.+-.
T Consensus 53 ~Adgyar---~tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~-~q--~id~~~~~~~vtk 123 (575)
T TIGR02720 53 AAAADAK---LTGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMNMDT-FQ--EMNENPIYADVAV 123 (575)
T ss_pred HHHHHHH---hhCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCC-cc--eechhhhhhhcce
Confidence 3555554 334556777778888877 345577788999999999865432 111111 00 011111 11111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ty 291 (362)
...+| .+++.+.+.+.+|+..+.+ .||+.|++-..
T Consensus 124 ~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 124 YNRTA--MTAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 12344 4677888888888887777 89999998643
No 189
>PRK12474 hypothetical protein; Provisional
Probab=88.71 E-value=3.5 Score=43.02 Aligned_cols=103 Identities=18% Similarity=0.062 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.|.+ .++-.++++..|=|++| ..-++..|..-+.|||+|+-..... ..... .+ ..|... +..-
T Consensus 57 ~mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~-~q--~~d~~~~~~~vt 127 (518)
T PRK12474 57 GAADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQYDA-PL--TSDIDGFARPVS 127 (518)
T ss_pred HHHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCCCC-cc--ccCHHHhhhccc
Confidence 345566554 34556777778999876 3345667889999999988643321 11100 00 112222 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| .+++++.+++++|+..+.+ .||++|++-.
T Consensus 128 k~~~~v--~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~ 164 (518)
T PRK12474 128 RWVHRS--ASAGAVDSDVARAVQAAQSAPGGIATLIMPA 164 (518)
T ss_pred ceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 122345 4888999999999988776 5999999864
No 190
>PRK07064 hypothetical protein; Provisional
Probab=88.70 E-value=3.8 Score=42.89 Aligned_cols=106 Identities=19% Similarity=0.112 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|.|.+.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-.- .+...........|.... .+-
T Consensus 55 ~~A~gyar~---tg~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 128 (544)
T PRK07064 55 NMADAHARV---SGGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVS 128 (544)
T ss_pred HHHHHHHHh---cCCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhc
Confidence 345666654 34456777777988887 345677788999999999864221 111100000000122211 111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| ++++++.+++.+|+..+.. .||+.|++-.
T Consensus 129 k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 129 KAAFRV--RSAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred ceEEEe--CCHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 223456 4788888899999888766 6999999863
No 191
>PRK08617 acetolactate synthase; Reviewed
Probab=88.51 E-value=3.7 Score=43.10 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhhhcCCcce
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDYVPG 256 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~~g~gi~g 256 (362)
+|.|.+.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|.-.... .+.....+.....++. +.+--..
T Consensus 57 ~A~gyar~---tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~-~~~tk~~ 129 (552)
T PRK08617 57 MAAAIGRL---TGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALF-RPITKYS 129 (552)
T ss_pred HHHhHhhh---cCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhh-hhhcceE
Confidence 34454433 34446677777888887 334577788999999998753221 1111100000001111 1111223
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 257 LKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 257 ~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
.+| ++++++.+.+.+|+..+.. .||+.|++-.
T Consensus 130 ~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 130 AEV--QDPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred EEe--CCHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 456 4888999999999988877 5899999863
No 192
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=88.47 E-value=3.1 Score=43.75 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.|.+ .++-.++++..|=|.+| ..-++..|-..+.|||+|.-.-... ..... .+ ..|... +.+-
T Consensus 60 ~~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q--~~d~~~l~~~~t 130 (557)
T PRK08199 60 MMAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFREREA-FQ--EIDYRRMFGPMA 130 (557)
T ss_pred HHHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCc-cc--ccCHHHhhhhhh
Confidence 345555544 34456677777888887 3455777889999999998543221 11100 01 012111 0111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
-...+| ++++++.+.+.+|+..+.. .||+.|++-
T Consensus 131 k~~~~v--~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 131 KWVAEI--DDAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred ceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 112455 5888999999999988877 599999886
No 193
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=88.47 E-value=3.9 Score=43.06 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.+... ++-.++++..|=|.+| ..-++.-|...+.|||+|+-.-... .... ..+ ..|... +.+-
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~t 123 (558)
T TIGR00118 53 HAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIGSD-AFQ--EADILGITMPIT 123 (558)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccCCC-CCc--ccChhhhhcCcc
Confidence 3456665543 4455777777888877 3455777889999999987542211 1110 001 011111 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
....+|+ +++++.+.+.+|+..+.. .||+.|++-
T Consensus 124 k~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 124 KHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 2335563 788999999999988877 489999985
No 194
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=88.18 E-value=3.7 Score=43.50 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc---ccccccccccCCchHhhh--
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKR-- 250 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~---gi~t~~~~~~~~~~~~~~-- 250 (362)
.-+|.|.|. ..++-.+|++..|=|++| ..-.|..|..-+.|+|.|.-.-.. |....++ .|....
T Consensus 52 a~mAdgyar---~TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~~g~~afQe-----~D~~~l~~ 120 (550)
T COG0028 52 AFAADGYAR---ATGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQE-----VDQVGLFR 120 (550)
T ss_pred HHHHHHHHH---HcCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccccCcchhhh-----cchhhHhh
Confidence 344555554 456778999999999988 445688899999999988652211 2111111 122221
Q ss_pred cCCcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 251 g~gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
.+--...+| .+++++.+.+++|+..+.+ .||++|++-
T Consensus 121 p~tk~~~~v--~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 121 PITKYNFEV--RSPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred hhheeEEEe--CCHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 111223566 4889999999999999887 489999985
No 195
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.14 E-value=3.9 Score=43.17 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.+.+. ++-.++++..|=|.+|. .-++..|...+.|+|+|.-.-... .... ..+ ..|... +.+-
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~-~~q--~~d~~~l~~~vt 126 (574)
T PRK06882 56 HMADGYARST---GKVGCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGTD-AFQ--ECDMLGISRPVV 126 (574)
T ss_pred HHHHHHHHhh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-ccc--ccchhhhhhccc
Confidence 3455555442 34556777778888773 345777889999999998543322 1110 001 011111 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
....+| .+++++...+.+|+..+.. .||+.|++-.
T Consensus 127 k~s~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 127 KHSFIV--KNAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred ceEEEe--CCHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 223566 4788888899999988766 5999999864
No 196
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.12 E-value=3.4 Score=44.05 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~g 253 (362)
.-+|-|.+.. .++-.++++..|=|.+|. .-++..|...+.|+|+|.-.-..........+ ..|... +.+-
T Consensus 62 ~~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~vt 133 (595)
T PRK09107 62 GHAAEGYARS---TGKPGVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIGSDAFQ--ECDTVGITRPCT 133 (595)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcCCCCCc--ccchhhhhhhhe
Confidence 3445566543 344567777778888873 34577788999999998865432110000001 112111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| ++++++.+.+.+|+..++. .||+.|++-.
T Consensus 134 k~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 134 KHNWLV--KDVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred EEEEEe--CCHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 123456 4889999999999999888 5999999853
No 197
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=88.07 E-value=4.2 Score=42.58 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|.|.|.. .++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-... ..... .+ ..|... +.+--
T Consensus 51 ~Adgyar~---tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-~q--~~d~~~~~~~~tk 121 (539)
T TIGR02418 51 MAQAVGRI---TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLLKLT-HQ--SMDNVALFRPITK 121 (539)
T ss_pred HHHHHHHH---hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccccCc-cc--ccchhhhhhccee
Confidence 45555543 34456777777888877 3445777889999999998643221 11000 00 111111 11111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...++ ++++++.+.+.+|+..+.. .||+.|++-.
T Consensus 122 ~~~~i--~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 122 YSAEV--QDPDALSEVVANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred eeeec--CCHHHHHHHHHHHHHHHhcCCCCCEEEEcCh
Confidence 12344 4788999999999988776 5899999864
No 198
>PRK05858 hypothetical protein; Provisional
Probab=88.04 E-value=4.1 Score=42.76 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc---ccccccccccCCchHhhhcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKRGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~---gi~t~~~~~~~~~~~~~~g~g 253 (362)
-+|.|.+.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|.-+-.. +....++ .....+. +.+-
T Consensus 56 ~~AdGyar~---tg~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~--~d~~~l~-~~~t 126 (542)
T PRK05858 56 FAAEAWAKL---TRVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQE--IDHVPFV-APVT 126 (542)
T ss_pred HHHHHHHHh---cCCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcc--cchhhhh-hhhh
Confidence 445666654 23445666666788776 345577888999999988754332 2111111 0011111 1122
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+|+ +++.+.+.+.+|+..+.. .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 2234553 688899999999988866 5899999853
No 199
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=87.71 E-value=4.2 Score=43.25 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh--hcCCcc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVP 255 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~--~g~gi~ 255 (362)
+|-|.|.+. .++-.++++..|=|++| ..-++..|...+.|||+|+-.-..........+ ..|... +..--.
T Consensus 56 mAdgyaR~t--~g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q--~~D~~~~~~~vtk~ 128 (588)
T TIGR01504 56 MAEGYTRAT--AGNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHKEDFQ--AVDIAAIAKPVSKM 128 (588)
T ss_pred HHHHHHHhc--CCCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCccc--ccCHHHHhhhhceE
Confidence 445555432 03344556666888877 334577788999999999854443211110001 112221 111122
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
..+| .+++++.+.+++|+..++. .||++|++-.
T Consensus 129 ~~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 129 AVTV--REAALVPRVLQQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred EEEc--CCHHHHHHHHHHHHHHHccCCCCeEEEEeCc
Confidence 3455 3788999999999998877 5899999864
No 200
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=87.19 E-value=7.3 Score=34.61 Aligned_cols=111 Identities=22% Similarity=0.257 Sum_probs=60.4
Q ss_pred Cccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCccc-ccchHHHHHH-HHHhCCCCeEEEEEcCCcccc--cccccccC
Q 018037 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALN-IAALWDLPAILVCENNHYGMG--TAEWRAAK 243 (362)
Q Consensus 169 ~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~~G~~~Ealn-~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~ 243 (362)
.|+-... +++|+|+|++-+ -..+++..++|=.. .|-..++.+. ....+++|+. |+..-+++.+ .+.+. +
T Consensus 53 ~gIaE~~~vg~a~GlA~~G~---~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~--s 126 (178)
T PF02779_consen 53 TGIAEQNMVGMAAGLALAGG---LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHH--S 126 (178)
T ss_dssp --S-HHHHHHHHHHHHHHSS---SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTS--S
T ss_pred cCcchhhccceeeeeeeccc---ccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccc--c
Confidence 3444433 467778877531 12345566655443 0123455554 7889999998 6655554332 22221 1
Q ss_pred CchHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 244 ~~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
..+..-. -.+|+++| .=.|+.++...++.|++. + ++|++|-.
T Consensus 127 ~~d~~~~-~~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 127 IEDEAIL-RSIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp SSHHHHH-HTSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred ccccccc-ccccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 2222221 23566554 446899999999999873 3 79998855
No 201
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=87.14 E-value=5.6 Score=40.45 Aligned_cols=110 Identities=16% Similarity=0.101 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhh-hcCC
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGDY 253 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~-~g~g 253 (362)
.+.+++|++++- .++++.+--.+++ ..+|.|-+|+-.++|+|+++.+-..+- +.......+|+.. +.-|
T Consensus 68 A~~~~~GAs~aG------aRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~--~~~i~~d~~D~~~~r~~g 137 (407)
T PRK09622 68 AMSACVGAAAAG------GRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAA--PLNVNGDHSDMYLSRDSG 137 (407)
T ss_pred HHHHHHHHHhhC------cCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCC--CcCCCchHHHHHHHhcCC
Confidence 356788888763 3454444222222 368999999999999888888776432 1222222234433 4344
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc---CCCEEEEEEEecCCCCC
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYRYHGHS 297 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~---~gP~lIe~~tyR~~GHs 297 (362)
+ +.+.-.++.++++....|.+.+.+ .-|+++-...++. +|.
T Consensus 138 ~--ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 138 W--ISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred e--EEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 4 445667999999999999988765 5899998888763 443
No 202
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=87.03 E-value=4.6 Score=42.66 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|-|.+.. .++-.++++..|=|.+| ..-++..|...+.|||+|.-.... .+.... .+ ..|... +.+
T Consensus 61 ~~~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~-~q--~~d~~~~~~~i 131 (566)
T PRK07282 61 LHEAEGYAKS---TGKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIGKDA-FQ--EADIVGITMPI 131 (566)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCCCCC-cc--ccChhchhcCC
Confidence 3445565554 24456777777888877 334577788899999999865332 121111 00 011111 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-....+|+ +++++.+.+.+|+..++. .||+.|++-.
T Consensus 132 tk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 132 TKYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred CceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 12234553 788899999999998877 5999999864
No 203
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=86.91 E-value=5.3 Score=42.40 Aligned_cols=104 Identities=18% Similarity=0.123 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-... +... ..+ ..|... +.+
T Consensus 51 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~~d~~~l~~~~ 121 (586)
T PRK06276 51 AHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLIGND-AFQ--EIDALGIFMPI 121 (586)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCC-CCc--cccHhhHHhhh
Confidence 34556665543 3456677777888887 3345777889999999987432211 1100 000 011111 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+| ++++++...+.+|+..+.. .||+.|++-.
T Consensus 122 tk~s~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 122 TKHNFQI--KKPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred cceEEec--CCHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 1223455 4788899999999988877 5999999863
No 204
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=86.61 E-value=4.9 Score=42.22 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccc--cccccCCc-hHhhh--c
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTA--EWRAAKSP-SYYKR--G 251 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~--~~~~~~~~-~~~~~--g 251 (362)
+|.|.|.+ .++-.++++..|=|++|. .-++..|...+.|||+|.-+.... +... ++.+.... +.... .
T Consensus 53 ~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARY---RGTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHh---hCCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 35555553 345567777889998873 345777889999999998654321 1111 01111001 12111 1
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 252 ~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
.--...+| .+++.+.+.+.+|+..+.. .||++|++-.
T Consensus 127 vtk~~~~v--~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~ 164 (535)
T TIGR03394 127 VTCDQAVL--DDPATAPAEIARVLGSARELSRPVYLEIPR 164 (535)
T ss_pred heEEEEEe--CChHHhHHHHHHHHHHHHHCCCCEEEEech
Confidence 11112344 3667777777777777766 8999999864
No 205
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.59 E-value=4.8 Score=42.58 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~ 252 (362)
.-+|.|.|.+. ++-.++++..|=|.+|. .-++..|...+.|+|+|.-.-... .... ..+ ..|... +.+
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~i 125 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLIGND-AFQ--ECDMIGISRPV 125 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-CCc--ccchhHHhhhc
Confidence 34566666543 44556677778888773 345777888999999887543221 1100 000 112211 111
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+|+ +++++.+.+++|+..++. .||+.|++-.
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 126 VKHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eeEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 12234664 788999999999998877 5999999853
No 206
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=86.51 E-value=4.2 Score=40.69 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEe-CCcccccchHHHHHHHHHhCC--------CCeEEEEEcCC-cccccccccccCCc
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEALNIAALWD--------LPAILVCENNH-YGMGTAEWRAAKSP 245 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~-GDGa~~~G~~~Ealn~A~~~~--------LPvIfVv~NN~-~gi~t~~~~~~~~~ 245 (362)
++.|+|+|++- .+++++++ .|-. +=.+.+-.+-++.++ +||+|++.+.. +|. .+++.+ .
T Consensus 87 vg~AaGlA~~G-----~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~-G~tH~~---~ 155 (356)
T PLN02683 87 TGIGVGAAYAG-----LKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGV-GAQHSQ---C 155 (356)
T ss_pred HHHHHHHHHCC-----CEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCC-CCcccc---C
Confidence 46677877642 24444443 3322 212333445666666 99999987732 232 222211 1
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
+. +.--.+|++.| .=.|+.+++.+++.|++. ++|++|-
T Consensus 156 ~~-a~lr~iPnl~V~~Pad~~e~~~~l~~a~~~---~gPv~ir 194 (356)
T PLN02683 156 FA-AWYSSVPGLKVLAPYSSEDARGLLKAAIRD---PDPVVFL 194 (356)
T ss_pred HH-HHHhcCCCCEEEEeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 22 21123666554 335888998889888754 8999885
No 207
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=86.36 E-value=3.7 Score=44.31 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=62.7
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCc
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSP 245 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~ 245 (362)
..|+-.+. +++|.|+|+. .-+++++++. .+.+-.+-+-.+.++..++||+|++...++. ...+++.+. .
T Consensus 403 dvGIAEq~~Vg~AaGLA~~-----G~rPvv~~fs--~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~--~ 473 (641)
T PLN02234 403 DVGIAEQHAVTFAAGLACE-----GLKPFCTIYS--SFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGA--F 473 (641)
T ss_pred CCCcCHHHHHHHHHHHHHC-----CCeEEEEehH--HHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccccc--H
Confidence 34554443 3556777663 2345555543 3444333344467789999999999777652 222222221 2
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
|..- .-.+|++.| .=.|+.+++.+++.|+.. .++|++| ...|.
T Consensus 474 Dia~-lr~iPnl~V~~Psd~~E~~~~l~~a~~~--~~~Pv~i--r~~R~ 517 (641)
T PLN02234 474 DVTF-MACLPNMIVMAPSDEAELFNMVATAAAI--DDRPSCF--RYHRG 517 (641)
T ss_pred HHHH-HhcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEE--Eeecc
Confidence 2221 114666554 335788888888877652 2689988 44443
No 208
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=86.15 E-value=4.5 Score=43.02 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.|.+. ++-.++++..|=|++| ..-++.-|..-+.|+|+|+-.-... +.... .+ ..|... +..-
T Consensus 56 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~-~q--~~d~~~l~~~vt 126 (597)
T PRK08273 56 FMAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAALGGHY-QQ--EVDLQSLFKDVA 126 (597)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhcCCCC-CC--ccCHHHHHHHHH
Confidence 3455655543 3445677777888887 3345777889999999998432211 11100 00 111111 0111
Q ss_pred -cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018037 254 -VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (362)
Q Consensus 254 -i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ty 291 (362)
-...+|+ +++++.+.+.+|+..+.. .||++|++-..
T Consensus 127 ~k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 127 GAFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 1224563 788899999999988877 89999998643
No 209
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=86.01 E-value=6.2 Score=41.87 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|.|.+.. .++-.++++..|=|.+|. .-++..|..-+.|+|+|+-.-.. .+.... .+ ..|... +.+--
T Consensus 66 ~Adgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-~q--~~d~~~~~~~~tk 136 (585)
T CHL00099 66 AADGYARS---TGKVGVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTDA-FQ--EVDIFGITLPIVK 136 (585)
T ss_pred HHHHHHHh---cCCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCC-cc--ccchhhhhcCcee
Confidence 45555543 344566777778888873 34577788999999998754221 111100 00 112111 11212
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+|+ +++++.+.+++|+..++. .||+.|++-.
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 137 HSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 234564 788999999999988876 5899999863
No 210
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=85.56 E-value=6.7 Score=41.37 Aligned_cols=104 Identities=20% Similarity=0.155 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~ 252 (362)
.-+|.|.+.+. ++-.++++..|=|.+| ..-++..|..-+.|+|+|.-.-... +... ..+ ..|.... .+
T Consensus 58 ~~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~i 128 (561)
T PRK06048 58 AHAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMIGND-AFQ--EADITGITMPI 128 (561)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCccccCCC-Ccc--ccchhhhccCc
Confidence 34555665543 4456777777888887 3445777889999999887432211 1100 000 1122111 11
Q ss_pred CcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 253 gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
--...+| .++.++.+.+.+|+..++. .||+.|++-.
T Consensus 129 tk~s~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 129 TKHNYLV--QDAKDLPRIIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred ceEEEEe--CCHHHHHHHHHHHHHHHhcCCCCeEEEecCh
Confidence 1122455 4788999999999988876 5999999953
No 211
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.48 E-value=6.9 Score=41.29 Aligned_cols=103 Identities=20% Similarity=0.130 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|-|.|.. .++-.++++..|=|.+| ..-++.-|...+.|+|+|.-.-... .... ..+ ..|... +.+-
T Consensus 55 ~~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~~t 125 (563)
T PRK08527 55 HAADGYARA---SGKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLIGTD-AFQ--EIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHhh---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC-CCc--ccchhhhhhccc
Confidence 445555543 34456777777888887 3345777889999999887432211 0000 000 011111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| ++++++.+++++|+..++. .||+.|++-.
T Consensus 126 k~s~~v--~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 126 KHNYLV--KSIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred ceEEEc--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 122355 5899999999999998887 5899999863
No 212
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=85.23 E-value=5 Score=43.38 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=63.8
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~ 244 (362)
..|+-.+.+ ++|.|+|+.. .-.++++.+ ..+.+ ..++++.+++..++||+||....+++.+ .++++. .
T Consensus 400 ~~GIaEq~mv~~AaGlA~~g----G~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~--i 470 (653)
T TIGR00232 400 HYGVREFAMGAIMNGIALHG----GFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQP--I 470 (653)
T ss_pred eecccHHHHHHHHHHHHHcC----CCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCC--H
Confidence 345544443 5566666521 112333222 34544 5678889999999999999988777643 233211 1
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.+++-. -.+|++.| .=-|..++..+++.|++. .++|++|-+
T Consensus 471 edia~l-r~iPn~~v~~PaD~~E~~~~~~~a~~~--~~gP~~irl 512 (653)
T TIGR00232 471 EQLASL-RAIPNLSVWRPCDGNETAAAWKYALES--QDGPTALIL 512 (653)
T ss_pred HHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCcEEEEE
Confidence 233221 13555443 235788888888888741 289998844
No 213
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=85.22 E-value=4 Score=43.19 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccc---cc--cccCC-chHhh
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTA---EW--RAAKS-PSYYK 249 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~---~~--~~~~~-~~~~~ 249 (362)
-+|-|.|.. .++-.++++..|=|.+| ..-++..|..-+.|||+|+-+-.... ... .. ..... .|...
T Consensus 64 ~~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~ 137 (569)
T PRK08327 64 SMAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGG 137 (569)
T ss_pred HHHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHH
Confidence 345555543 23446677777888877 34567888899999999987543321 100 00 00001 12211
Q ss_pred --hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 250 --~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
+..--...+|+ +++++..++.+|+..++. .||++|++-
T Consensus 138 ~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 138 LVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 11111123553 788999999999988876 699999986
No 214
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=84.93 E-value=6.3 Score=40.34 Aligned_cols=97 Identities=21% Similarity=0.238 Sum_probs=59.2
Q ss_pred HHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc---ccccccccccCCchHhh--hcCC
Q 018037 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 179 A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~---gi~t~~~~~~~~~~~~~--~g~g 253 (362)
|-|.|.+. ++..+|++..|-|++|- -.-|.-|-.-+.|+|.+- .+. .|++..-+ ..|... |..-
T Consensus 145 AegYaR~s---gKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQ---EadiVgisRScT 213 (675)
T KOG4166|consen 145 AEGYARSS---GKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFT--GQVPTSAIGTDAFQ---EADIVGISRSCT 213 (675)
T ss_pred hhhhhhhc---CCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEe--cccchhhcccchhc---cCCeeeeeeccc
Confidence 45655543 57789999999999883 233555667788865442 232 23332111 111111 1110
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEM 288 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~ 288 (362)
-..+-| .|++++-.-+.+|++.+.+ .||+|+++
T Consensus 214 KwNvmV--kdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 214 KWNVMV--KDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred eeheee--ecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 011234 5899999999999999877 69999987
No 215
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=84.92 E-value=5.1 Score=43.54 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCc
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSP 245 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~ 245 (362)
..|+-.+. +++|.|+|+. .-+++++++. .|.+=.+-+-.+.++..++||+|++...++. ...+++.. ..
T Consensus 402 dvGIAEq~~vg~AaGLA~~-----G~kPvv~~fs--~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~--~~ 472 (677)
T PLN02582 402 DVGIAEQHAVTFAAGLACE-----GLKPFCAIYS--SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG--AF 472 (677)
T ss_pred ccCcCHHHHHHHHHHHHHC-----CCeEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccc--cH
Confidence 44555443 3567777663 2356666654 3444223335577789999999999877652 22222222 12
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
|++-. -.+|++.| .=.|..+++.+++.|+.. .++|++|-.
T Consensus 473 Dia~l-r~iPnl~V~~Psd~~E~~~~l~~al~~--~~gPv~IR~ 513 (677)
T PLN02582 473 DVTYM-ACLPNMVVMAPSDEAELFHMVATAAAI--DDRPSCFRY 513 (677)
T ss_pred HHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 32211 14566554 335788888888888753 259998854
No 216
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.91 E-value=8.1 Score=41.04 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|-|.|.+. ++-.++++..|=|.+| ..-++..|...+.|||+|.-.-... .+.. .-+ ..|... +.+--
T Consensus 74 ~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~l~~~itk 144 (587)
T PRK06965 74 AADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIGQD-AFQ--ECDTVGITRPIVK 144 (587)
T ss_pred HHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC-Ccc--cccHHHHhcCCcc
Confidence 566666543 3445667777888877 3345777888999999887432211 1100 000 111111 11111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+|. +++++.+.+.+|+..++. .||+.|++-.
T Consensus 145 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 145 HNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 234553 788999999999988877 4999999864
No 217
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=84.49 E-value=4.4 Score=44.09 Aligned_cols=109 Identities=9% Similarity=-0.016 Sum_probs=63.9
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCc
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSP 245 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~ 245 (362)
..|+-.+. +..|+|+|.. .-+++++++. .|-|=.+-+-.+-++.+++||+||+..-++.. ..+++.. ..
T Consensus 427 DvGIAEQhaVt~AAGLA~~-----G~kPvv~iys--tFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g--~~ 497 (701)
T PLN02225 427 NVGMAEQHAVTFSAGLSSG-----GLKPFCIIPS--AFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCG--AF 497 (701)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEeeh--hHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccc--cH
Confidence 44555443 3556777753 3367777773 56553344445557899999999987655421 1122221 12
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
|++- --.+|++.| .=.|..+++..++.|+.. .++|++|-.
T Consensus 498 Dia~-lr~IPnm~V~aPsD~~El~~mL~~A~~~--~~gPv~IR~ 538 (701)
T PLN02225 498 DIAF-MSSLPNMIAMAPADEDELVNMVATAAYV--TDRPVCFRF 538 (701)
T ss_pred HHHH-HhcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCCEEEEe
Confidence 3221 124666655 335888888888887741 279999844
No 218
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=83.77 E-value=5.8 Score=42.81 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=64.2
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHH-HHHHhCCCCeEEEEEcCCcc-cccccccccCC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYG-MGTAEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Eal-n~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~ 244 (362)
..|+-.+.+ ++|.|+|+. .-++++.++. .+.+ ..++.+ +.++..++||+|++...++. ...+++.. .
T Consensus 365 d~GIaE~~mvg~AaGlA~~-----G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~ 434 (641)
T PRK12571 365 DVGIAEQHAVTFAAGLAAA-----GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--A 434 (641)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--c
Confidence 455555543 567777762 2345555544 3544 455555 66889999999999666542 22222222 1
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (362)
.+++-. -.+|++.| -=.|+.+++.+++.|+++ .++|++|-..
T Consensus 435 ~dia~l-r~iPnl~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~~ 477 (641)
T PRK12571 435 FDLAFL-TNLPNMTVMAPRDEAELRHMLRTAAAH--DDGPIAVRFP 477 (641)
T ss_pred HHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEEe
Confidence 222221 24666544 335888999999988862 2799998553
No 219
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=83.69 E-value=9.1 Score=40.43 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhh--cCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~--g~g 253 (362)
-+|.|.|.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|.-+-... ..... .+ ..+.... ..-
T Consensus 55 ~~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-~Q--~~d~~~l~~~it 125 (574)
T PRK09124 55 FAAGAEAQL---TGELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGSGY-FQ--ETHPQELFRECS 125 (574)
T ss_pred HHHHHHHHh---hCCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCC-cc--ccChhhhcccce
Confidence 345565544 23334444445777776 2234667888999999998653321 11100 00 0111110 111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
....+|+ +++++.+.+.+|+..+.. .||+.|++-
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 126 HYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 1123453 677888888888887777 899999984
No 220
>PLN02573 pyruvate decarboxylase
Probab=83.53 E-value=9.5 Score=40.52 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-ccc--ccccccCCchHhh-----
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGT--AEWRAAKSPSYYK----- 249 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t--~~~~~~~~~~~~~----- 249 (362)
+|-|.|.+. + -.++++..|=|++| ..-++..|...+.|||+|+-.-... ... ..+.....+++..
T Consensus 69 mAdgyaR~t---g-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (578)
T PLN02573 69 AADGYARAR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 141 (578)
T ss_pred HHHHHHHHh---C-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHh
Confidence 455555443 4 56778888888877 2345667888899999998643332 111 0010000011111
Q ss_pred hcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 250 RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 250 ~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
+..-....+| .+++.+.+.+.+|+..++. .||++|++-.
T Consensus 142 ~~itk~s~~v--~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~ 181 (578)
T PLN02573 142 QTVTCYQAVI--NNLEDAHELIDTAISTALKESKPVYISVSC 181 (578)
T ss_pred hceEEEEEEe--CCHHHHHHHHHHHHHHHHhcCCCEEEEeeh
Confidence 1111123455 3788888888888888877 8999999853
No 221
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=83.37 E-value=9.6 Score=40.42 Aligned_cols=102 Identities=14% Similarity=0.055 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|-|.+.+. ++-.+|++..|=|.+|. .-++..|...+.|+|+|.-+-... +... ..+ ..+... +.+--
T Consensus 56 mAdgyar~t---gk~~v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~Q--e~d~~~l~~~~tk 126 (578)
T PRK06546 56 AAAAEAQLT---GKLAVCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIGSG-FFQ--ETHPDRLFVECSG 126 (578)
T ss_pred HHHhHHHhh---CCceEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCC-Ccc--ccChhhhccccee
Confidence 455555442 33345555567787772 234667889999999998542221 1100 000 001111 01111
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018037 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (362)
...+| ++++++.+.+.+|+..+.. .||+.|++-.
T Consensus 127 ~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 127 YCEMV--SSAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred eEeEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 12455 3788888889999888877 8999999863
No 222
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=83.00 E-value=7.5 Score=41.37 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=62.7
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHH-HHHHHHhCCCCeEEEEEcCCccc-ccccccccCC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHYGM-GTAEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~E-aln~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~ 244 (362)
..|+-.+.+ ++|.|+|+. .-++++.++. .+.+ ..+| ..+.++..++||++++...++.. ..+++.+ .
T Consensus 325 ~~GIaE~~mvg~A~GlA~~-----G~~p~~~~f~--~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~--~ 394 (580)
T PRK05444 325 DVGIAEQHAVTFAAGLATE-----GLKPVVAIYS--TFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQG--A 394 (580)
T ss_pred CCChHHHHHHHHHHHHHHC-----CCeeEEEeeH--HHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccc--c
Confidence 445554443 567777763 2344444443 4544 3444 55668899999999998666531 1222221 1
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.|++-. -.+|++.| .-.|+.++..+++.|++. .++|++|-.
T Consensus 395 edia~l-r~iP~l~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~ 436 (580)
T PRK05444 395 FDLSYL-RCIPNMVIMAPSDENELRQMLYTALAY--DDGPIAIRY 436 (580)
T ss_pred HHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEe
Confidence 222221 23566544 346888999999988862 279998854
No 223
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=82.92 E-value=11 Score=37.84 Aligned_cols=109 Identities=21% Similarity=0.170 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh-hc
Q 018037 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK-RG 251 (362)
Q Consensus 174 ~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~-~g 251 (362)
+.+..++|+++|- -+..-+..|.|-+- .+|.+-+|+-..+|+|+++.+..... +-++.. ...|+.. +-
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~L---m~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~r~ 127 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLLL---MAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAARD 127 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHHH---HHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHHHc
Confidence 3477788888863 23444555555543 68999999999999998887776532 111111 1123222 32
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018037 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (362)
Q Consensus 252 ~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~ 294 (362)
-|++-+... |+.+.+...-.|...+.+ .-|+++-..-++..
T Consensus 128 ~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 128 TGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred cCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 355555544 777888777788888777 89999988877754
No 224
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=82.13 E-value=7.2 Score=41.56 Aligned_cols=109 Identities=11% Similarity=0.087 Sum_probs=63.6
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCch
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
..|+-.+. +++|.|+|+. + -+++++.+.+ +-+-.+-+-.+-++..++||+|++...++.-..+++.. ..|
T Consensus 324 d~GIaEq~~v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~D 394 (581)
T PRK12315 324 DVGIAEQESVAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFD 394 (581)
T ss_pred CCCchHHHHHHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHH
Confidence 44555443 3566777753 2 3555566655 33322333455578999999999986655422222222 123
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
++-. -.+|++.| --.|+.++..+++.|++. .++|++|-.
T Consensus 395 ia~l-r~iPnl~V~~P~d~~e~~~~l~~a~~~--~~gP~~ir~ 434 (581)
T PRK12315 395 IPMI-SNIPNLVYLAPTTKEELIAMLEWALTQ--HEHPVAIRV 434 (581)
T ss_pred HHHH-hcCCCCEEEecCCHHHHHHHHHHHHhC--CCCcEEEEE
Confidence 2221 24666655 346888998888888752 269998855
No 225
>PTZ00089 transketolase; Provisional
Probab=81.53 E-value=9.7 Score=41.26 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=67.4
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccc--ccccccCC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t--~~~~~~~~ 244 (362)
..|+-.+.+ .+|.|+|+. +.-.++++.+. .|.+ -.++.+.+++..+|||+||+...+.+.+. ++++. .
T Consensus 407 ~~GIaEq~mv~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~--i 477 (661)
T PTZ00089 407 RFGVREHAMCAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQP--V 477 (661)
T ss_pred eeeecHHHHHHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCccc--H
Confidence 345554443 566677762 12245555553 6666 67888999999999999999888776432 22221 1
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.|++.. -.+|++.| .=-|..++..+++.|++. .++|+.|-+
T Consensus 478 edia~l-R~iPn~~V~~PaD~~E~~~~l~~al~~--~~gP~~irl 519 (661)
T PTZ00089 478 ETLALL-RATPNLLVIRPADGTETSGAYALALAN--AKTPTILCL 519 (661)
T ss_pred HHHHHH-hcCCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 233221 13555544 235788888888888742 279999854
No 226
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=81.52 E-value=12 Score=38.99 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccc-ccccccccCCchHhh--hcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi-~t~~~~~~~~~~~~~--~g~g 253 (362)
-+|.|.+.+ .++..++++..|=|.+| ..-++..|...+.|+|+|+-.-.+.. ......+ ..|... +.+-
T Consensus 62 ~~Adgyar~---tg~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~--~~d~~~l~~~~t 133 (530)
T PRK07092 62 GMADGYAQA---TGNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFLA--AVQAAELPKPYV 133 (530)
T ss_pred HHHHHHHHH---hCCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchhc--ccCHHHhhcccc
Confidence 356666654 34555666667888775 34567788899999998876433321 1000000 011111 1111
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
-...+| .+++++.+.+.+|+..++. .||++|++-.
T Consensus 134 k~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 134 KWSIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred cceeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccH
Confidence 112344 5788999999999988877 4899999863
No 227
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=81.25 E-value=8.7 Score=37.87 Aligned_cols=104 Identities=23% Similarity=0.190 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeC-CcccccchHHHHHHHHHhC--------CCCeEEEEEcCCcccccccccccCCch
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYG-DGAANQGQLFEALNIAALW--------DLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~G-DGa~~~G~~~Ealn~A~~~--------~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
++.|+|+|++ .-+++++++. +-. +=.+..-.+-++.+ ++|+++...+-.++...+++.+.
T Consensus 64 vg~AaGlA~~-----G~~Piv~~~~~~f~--~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~---- 132 (327)
T PRK09212 64 AGLAVGAAFA-----GLRPIVEFMTFNFS--MQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC---- 132 (327)
T ss_pred HHHHHHHHHc-----CCeeEEEeehhhHH--HHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC----
Confidence 4667777764 2245555553 322 11122222333333 67788877664454433333222
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~ 293 (362)
+.+.--.+|++.| .=.|+.+++.+++.|++. ++|++|-..-.|+
T Consensus 133 ~ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~~---~~Pv~i~~~~~~~ 177 (327)
T PRK09212 133 YAAWYSHIPGLKVVAPYFAADCKGLLKTAIRD---PNPVIFLENEILY 177 (327)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEEEchhhc
Confidence 2121134676655 346888998888888864 8999884443333
No 228
>PRK12753 transketolase; Reviewed
Probab=80.32 E-value=12 Score=40.66 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccc--ccccccCC
Q 018037 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t--~~~~~~~~ 244 (362)
..|+-.+. +.+|.|+|+- +.-.++++.+ +.|.+ ..++.+.+++..++||+||....+++.+. ++++. .
T Consensus 406 ~~GIaEq~mv~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~--i 476 (663)
T PRK12753 406 HYGVREFGMTAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQP--V 476 (663)
T ss_pred EeeecHHHHHHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCccccc--H
Confidence 34554443 3667777761 1113444444 35655 78899999999999999999988876632 22221 2
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.|++.. -.+|++.| .=-|..++..+++.|++. .++|+.|-+
T Consensus 477 edla~l-R~iPn~~v~~PaD~~E~~~~~~~al~~--~~gP~~irl 518 (663)
T PRK12753 477 EQLASL-RLTPNFSTWRPCDQVEAAVAWKLAIER--HNGPTALIL 518 (663)
T ss_pred HHHHHH-hcCCCCEEEccCCHHHHHHHHHHHHhc--CCCCEEEEe
Confidence 233321 13455443 224778888888888862 279988855
No 229
>PRK06154 hypothetical protein; Provisional
Probab=80.29 E-value=10 Score=40.11 Aligned_cols=90 Identities=23% Similarity=0.175 Sum_probs=54.9
Q ss_pred CeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhhhcCCcceEEEeCCCHHHHHHHH
Q 018037 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQAC 271 (362)
Q Consensus 193 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~~g~gi~g~~VdG~D~~av~~a~ 271 (362)
.++++..|=|.+| ..-++..|..-+.|||+|+-..... ...... ....+.. +..--...+| .+++++.+.+
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~--~d~~~~~-~~vtk~~~~v--~~~~~~~~~i 154 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTDVAPN--FESLRNY-RHITKWCEQV--TLPDEVPELM 154 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccccCCCC--cchhhhH-hhcceeEEEC--CCHHHHHHHH
Confidence 4555556888877 3355778889999999998543321 111000 0000111 1111122455 4788999999
Q ss_pred HHHHHHhcc--CCCEEEEEEE
Q 018037 272 KFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 272 ~~A~~~ar~--~gP~lIe~~t 290 (362)
.+|+..+++ .||++|++-.
T Consensus 155 ~~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 155 RRAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHHhcCCCceEEEecch
Confidence 999988876 6999999864
No 230
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=79.90 E-value=6.6 Score=42.00 Aligned_cols=108 Identities=23% Similarity=0.269 Sum_probs=64.3
Q ss_pred CccccchhHHHH-HHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCCc
Q 018037 169 HGIVGAQIPLGC-GLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKSP 245 (362)
Q Consensus 169 ~g~lG~~~p~A~-G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~~ 245 (362)
.|+=..+++.++ |+|+-. ..+.+.|.=-.-.-...-++.+|++.++|++||..-+.+|.+ .|+++ +..
T Consensus 407 ~GVREf~M~AimNGialhG-------g~~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHq--PiE 477 (663)
T COG0021 407 FGVREFAMAAIMNGIALHG-------GFIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQ--PVE 477 (663)
T ss_pred EeeHHHHHHHHHHhHHHhc-------CceeecceehhhHhhhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCC--cHH
Confidence 355556665554 666521 123333222111113455799999999999999999998765 33322 122
Q ss_pred hHhh-hc-CCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018037 246 SYYK-RG-DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMD 289 (362)
Q Consensus 246 ~~~~-~g-~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (362)
.++. |+ .++..+|- -|..+...+.+.|+++ +++|++|-+.
T Consensus 478 qLa~LRaiPN~~V~RP--aD~~Et~~aw~~Al~~--~~gPt~Lilt 519 (663)
T COG0021 478 QLASLRAIPNLSVIRP--ADANETAAAWKYALER--KDGPTALILT 519 (663)
T ss_pred HHHHhhccCCceeEec--CChHHHHHHHHHHHhc--CCCCeEEEEe
Confidence 3333 44 45555543 2556777888888873 4899988664
No 231
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=79.28 E-value=12 Score=39.97 Aligned_cols=101 Identities=17% Similarity=0.258 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-ccccccccccCCchHhhhcCCc
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDYV 254 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-gi~t~~~~~~~~~~~~~~g~gi 254 (362)
+..|.|+|.+ .-+++++++- .+-|-.+-.-+-=.+..+|||+|+++-.+. |...++........|- --+
T Consensus 371 VT~AAGlA~~-----G~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l---~~i 440 (627)
T COG1154 371 VTFAAGLAAE-----GMKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFL---RCI 440 (627)
T ss_pred HHHHHHHHhC-----CCCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHH---hcC
Confidence 3444454432 3456888872 243333333344467899999999997764 6655544432111111 136
Q ss_pred ceEEEe-CCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 255 PGLKVD-GMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 255 ~g~~Vd-G~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
|++.+- -.|..++++.+..|+.+ .++|+.|-.
T Consensus 441 Pnmvi~aP~de~el~~ml~ta~~~--~~gP~AiRy 473 (627)
T COG1154 441 PNMVIMAPRDEEELRQMLYTALAQ--DDGPVAIRY 473 (627)
T ss_pred CCcEEecCCCHHHHHHHHHHHHhc--CCCCeEEEe
Confidence 776663 36888999888888876 248999843
No 232
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=79.27 E-value=11 Score=37.69 Aligned_cols=98 Identities=23% Similarity=0.223 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEE-eCCcccccchHHHHHHHHHh--------CCCCeEEEEEcCCcccccccccccCCch
Q 018037 176 IPLGCGLAFAQKYSKDETVTFAL-YGDGAANQGQLFEALNIAAL--------WDLPAILVCENNHYGMGTAEWRAAKSPS 246 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~-~GDGa~~~G~~~Ealn~A~~--------~~LPvIfVv~NN~~gi~t~~~~~~~~~~ 246 (362)
+++|.|+|++ .-++++++ +.|=. +-.+-+-.|-++. +++|+|++.....++...+++.+.
T Consensus 95 vg~AaGlA~~-----G~~Pvv~~~fa~Fl--~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~---- 163 (355)
T PTZ00182 95 AGFAIGAAMN-----GLRPIAEFMFADFI--FPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS---- 163 (355)
T ss_pred HHHHHHHHhC-----CCEEEEEechhhHH--HHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch----
Confidence 4667777764 22344443 45432 3223333444554 467777776544555444433221
Q ss_pred HhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 247 ~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
+.+.--.+|++.| .=.|+.+++.+++.|++. ++|++|-
T Consensus 164 ~ea~lr~iPn~~V~~Psd~~e~~~~l~~a~~~---~~P~~i~ 202 (355)
T PTZ00182 164 FEAYFAHVPGLKVVAPSDPEDAKGLLKAAIRD---PNPVVFF 202 (355)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 2121124666554 335788898889888864 8999773
No 233
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=79.19 E-value=16 Score=39.06 Aligned_cols=109 Identities=18% Similarity=0.187 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhC--CCCeEEEEEcCCcccccccccccCCchHhhhcCC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--DLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY 253 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~--~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~g 253 (362)
+.+++|+++|- .++++..--.+++ ...|.|..++.. .+|+|+++-|. -|-+..+..+ ...+..+..+
T Consensus 59 ~~~~~GAs~aG------~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~-~gp~~~~~~q--~d~~~~~~~~ 127 (595)
T TIGR03336 59 VEVAAGAAWSG------LRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADD-PSMHSSQNEQ--DTRHYAKFAK 127 (595)
T ss_pred HHHHHHHHhcC------cceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccC-CCCccchhhH--hHHHHHHhcC
Confidence 45788888762 3344433322232 245556555533 56676666654 3322211122 1224445456
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018037 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (362)
Q Consensus 254 i~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~tyR~~GHs~~ 299 (362)
+|. .+-.++.++++...+|++.+.+ +-|++|-... .-+|+..
T Consensus 128 ~~v--l~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~~~ 170 (595)
T TIGR03336 128 IPC--LEPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHMRG 170 (595)
T ss_pred CeE--ECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eecccee
Confidence 663 4556899999999999999999 9999998875 4566543
No 234
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=78.50 E-value=6.3 Score=40.13 Aligned_cols=104 Identities=18% Similarity=0.145 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-cccccccccCCchHhh--hcCCc
Q 018037 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (362)
Q Consensus 178 ~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~~~~~~~~~~~--~g~gi 254 (362)
+|.|.|.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-.-... ..+.. .+. .|... +.+-.
T Consensus 53 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q~--~d~~~~~~~~tk 123 (432)
T TIGR00173 53 FALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGCGA-NQT--IDQPGLFGSYVR 123 (432)
T ss_pred HHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCCCC-Ccc--cchhhHHhhccc
Confidence 45555543 34556777777888877 3445777888999999987543321 11100 000 11111 01111
Q ss_pred ceEEEe-CCC---HHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 255 PGLKVD-GMD---ALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 255 ~g~~Vd-G~D---~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
...+|. ..+ +..+.+.+.+|+..+.. .||+.|++-.
T Consensus 124 ~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 124 WSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred eeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 123332 111 22366677777776665 5999999863
No 235
>PLN02790 transketolase
Probab=77.50 E-value=14 Score=39.90 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=63.8
Q ss_pred CCccccchh-HHHHHHHHHHhhCC-CCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSK-DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAK 243 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~-~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~ 243 (362)
..|+-.+.+ .+|.|+|+. + .-.++++.+. .+.. ..++++.+++..++||+||....+.+.+ .++++.
T Consensus 396 ~~GIaEq~mv~~AaGlA~~----G~G~~P~~~tf~--~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~-- 466 (654)
T PLN02790 396 RFGVREHGMGAICNGIALH----SSGLIPYCATFF--VFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQP-- 466 (654)
T ss_pred EeeechHHHHHHHHHHHhc----CCCcEEEEEecH--HHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCccc--
Confidence 345554443 566677652 1 1233443331 2232 4677888999999999999988877643 222221
Q ss_pred CchHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 244 ~~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
-.|++.. -.+|++.| .=-|..++..+++.|++. .++|+.|-+
T Consensus 467 iedla~l-R~iPnl~V~~PaD~~E~~~~l~~al~~--~~gP~~irl 509 (654)
T PLN02790 467 IEHLASL-RAMPNILMLRPADGNETAGAYKVAVTN--RKRPTVLAL 509 (654)
T ss_pred HHHHHHh-cCCCCcEEEeCCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 1223221 23565554 335788888888888752 279988854
No 236
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=77.09 E-value=13 Score=36.23 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=66.0
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHH-HHHHhCCCCeEEEEEcCCcccc--cccccccC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYGMG--TAEWRAAK 243 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Eal-n~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~ 243 (362)
+.|+..+.+ +.|+|.|++-| .+.++ +=+.|..+-.||=+ |..+..+|||-+|+.+-++..+ .+.++.
T Consensus 53 NvGIaEQ~mvg~AAGLA~~Gk-----~Pfv~--tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~-- 123 (312)
T COG3958 53 NVGIAEQDMVGTAAGLALAGK-----KPFVS--TFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQA-- 123 (312)
T ss_pred ecchHHHHHHHHHHHHHhcCC-----Cceee--chHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchh--
Confidence 567776654 78888887642 33443 34566666667755 4456779999999999886432 222222
Q ss_pred CchHhh-hcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 244 SPSYYK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 244 ~~~~~~-~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
..|++- | ++|...| .-.|..++++++..+.++ +||+.+-+
T Consensus 124 ~EDiaimR--~lpn~~V~~P~D~v~~~~i~~~~~~~---~GP~Y~Rl 165 (312)
T COG3958 124 LEDIAIMR--GLPNMTVIAPADAVETRAILDQIADY---KGPVYMRL 165 (312)
T ss_pred HHHHHHHh--cCCCceEEccCcHHHHHHHHHHHHhc---CCCEEEEe
Confidence 234432 3 3444433 445766777777777766 99998844
No 237
>PRK12754 transketolase; Reviewed
Probab=76.99 E-value=17 Score=39.55 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=65.7
Q ss_pred CCccccchh-HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCccccc--ccccccCC
Q 018037 168 GHGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKS 244 (362)
Q Consensus 168 ~~g~lG~~~-p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t--~~~~~~~~ 244 (362)
..|+-.+++ .+|.|+|+-. .-.+.++.+ ..|.+ ..++++.+++..++||++|....+++.+. ++++. -
T Consensus 406 ~~GIaE~~Mv~iaaGlA~~~----G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~--i 476 (663)
T PRK12754 406 HYGVREFGMTAIANGIALHG----GFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQP--V 476 (663)
T ss_pred eeccchhhHHHHHhhHHhcC----CCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCccc--H
Confidence 345544443 5667777521 112333333 24554 78899999999999999999888876542 22221 2
Q ss_pred chHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 245 ~~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
.|++.. -.+|++.| .=-|..++..+++.|+++ .+||+.|-+
T Consensus 477 Edla~l-R~iPn~~V~~PaD~~E~~~~~~~a~~~--~~gP~yirl 518 (663)
T PRK12754 477 EQVASL-RVTPNMSTWRPCDQVESAVAWKYGVER--QDGPTALIL 518 (663)
T ss_pred HHHHHH-hcCCCcEEecCCCHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 233331 13555444 335788888888888763 379997744
No 238
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=76.23 E-value=5.4 Score=25.39 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018037 319 DPIERIRKLILAHDLATEKELKDIEKEVR 347 (362)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~el~~i~~e~~ 347 (362)
+++..++. |.+.|++|++|..+.++++.
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHHh
Confidence 45666666 56889999999999888763
No 239
>PRK05899 transketolase; Reviewed
Probab=72.53 E-value=24 Score=37.90 Aligned_cols=108 Identities=25% Similarity=0.293 Sum_probs=64.2
Q ss_pred Cccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccc--cccccccCCc
Q 018037 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMG--TAEWRAAKSP 245 (362)
Q Consensus 169 ~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~--t~~~~~~~~~ 245 (362)
.|+-.+. +++|.|+|+. +.-+++++.+ ..+. .-.++.+.+++..++|+++|....+++.+ .+++ +. ..
T Consensus 372 ~GIaE~~~vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q~-~e 442 (624)
T PRK05899 372 YGVREFAMAAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-QP-VE 442 (624)
T ss_pred eChhHHHHHHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-cc-HH
Confidence 3444443 3566677653 2123344333 2443 35778888889999999999988776432 3333 21 12
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
++.-. -.+|++.| .=.|+.++..+++.|++. .++|++|-.
T Consensus 443 dia~~-r~iP~~~V~~P~d~~e~~~~l~~a~~~--~~~P~~ir~ 483 (624)
T PRK05899 443 QLASL-RAIPNLTVIRPADANETAAAWKYALER--KDGPSALVL 483 (624)
T ss_pred HHHHH-HhCCCcEEEeCCCHHHHHHHHHHHHHc--CCCCEEEEE
Confidence 22211 23566554 346888999999888862 269998866
No 240
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=66.55 E-value=20 Score=43.09 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc-c--ccccccccCCchHhhhcCC
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-M--GTAEWRAAKSPSYYKRGDY 253 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g-i--~t~~~~~~~~~~~~~~g~g 253 (362)
-+|.|.|.+. ++-.+++|..|=|.+| ..-++..|..-+.|+|+|+-+-... . +..+. .....+.. .+-
T Consensus 353 fmAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~--iDq~~lf~-pvt 423 (1655)
T PLN02980 353 FHALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQA--INQVNHFG-SFV 423 (1655)
T ss_pred HHHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcc--cchhhHHH-hhh
Confidence 3566766553 4556777888888877 5667888999999999998765432 1 11111 01111111 011
Q ss_pred cceEEEeCCCHHH------HHHHHHHHHHHhcc--CCCEEEEEE
Q 018037 254 VPGLKVDGMDALA------VKQACKFAKEHALK--NGPMILEMD 289 (362)
Q Consensus 254 i~g~~VdG~D~~a------v~~a~~~A~~~ar~--~gP~lIe~~ 289 (362)
-....| .++++ +..++++|+..++. .||+.|++-
T Consensus 424 K~s~~v--~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 424 RFFFNL--PPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred heeecC--CCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 111233 23333 45677778777766 599999996
No 241
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=65.37 E-value=50 Score=32.59 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=23.5
Q ss_pred CcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018037 253 YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (362)
Q Consensus 253 gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (362)
.+|+++| .=.|+.+.+..++.|++. ++|++|-
T Consensus 139 ~iPgl~V~~Psd~~d~~~~l~~a~~~---~~Pv~ir 171 (327)
T CHL00144 139 SVPGLQIVACSTPYNAKGLLKSAIRS---NNPVIFF 171 (327)
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 5677655 235888888888888754 8999874
No 242
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=64.87 E-value=21 Score=31.30 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc-c--cccccccccCCchHhhhc
Q 018037 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-G--MGTAEWRAAKSPSYYKRG 251 (362)
Q Consensus 175 ~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~-g--i~t~~~~~~~~~~~~~~g 251 (362)
+++++.|+.+|-+ ...+.+---|=-|.=...++|+ ..+++|+++++...++ . |..+.......+++- .+
T Consensus 54 g~GIcAGa~lAGk-----k~ailmQnsGlGNsiNal~SL~--~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiL-e~ 125 (172)
T COG4032 54 GVGICAGAYLAGK-----KPAILMQNSGLGNSINALASLY--VTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKIL-EG 125 (172)
T ss_pred ceeeehhhhhcCC-----CcEEEEeccCcchHHHHHHHHH--HHhccchhhhhhccchhhcCCccccccchhhHHHH-hh
Confidence 3566788888742 3444443333223222444444 4789999888877765 2 322221111122221 34
Q ss_pred CCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018037 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (362)
Q Consensus 252 ~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (362)
.++|...+- .+++-++.+..+...+-+ ..|+.+-+
T Consensus 126 ~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 126 LELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred cCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 677777775 477878888888888877 88876654
No 243
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=59.86 E-value=95 Score=26.91 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=58.1
Q ss_pred Cccccch-hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCC-CCeEEEEEc-CCcccccccccccCCc
Q 018037 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-LPAILVCEN-NHYGMGTAEWRAAKSP 245 (362)
Q Consensus 169 ~g~lG~~-~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~-LPvIfVv~N-N~~gi~t~~~~~~~~~ 245 (362)
.|+-.+. +++|.|+|+. +. .++++++..-.. ...+.+.+...++ +|+|+.+.. ..+|...+++.. ..
T Consensus 54 ~gIaE~~~vg~a~GlA~~----G~-~pi~~~~~~f~~---~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~--~~ 123 (168)
T smart00861 54 TGIAEQAMVGFAAGLALA----GL-RPVVAIFFTFFD---RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHS--QE 123 (168)
T ss_pred cCcCHHHHHHHHHHHHHc----CC-CcEEEeeHHHHH---HHHHHHHHhCcccCCCEEEEecCccccCCCCccccc--hh
Confidence 3444333 3556676664 22 556666543322 3566687887786 666665543 344442222221 11
Q ss_pred hHhhhcCCcceEEE-eCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018037 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 246 ~~~~~g~gi~g~~V-dG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (362)
+... --.+|++.| .=.|+.+++..++.++++ .++|++|-+
T Consensus 124 ~~~~-~~~iP~~~v~~P~~~~e~~~~l~~a~~~--~~~p~~i~~ 164 (168)
T smart00861 124 DEAL-LRAIPGLKVVAPSDPAEAKGLLRAAIRR--DDGPPVIRL 164 (168)
T ss_pred HHHH-HhcCCCcEEEecCCHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 2211 124665543 556889999999998842 268977743
No 244
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=58.82 E-value=30 Score=28.10 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=31.6
Q ss_pred CCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 190 ~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
+++.++|++.-.|...+ ..+.+..|...+.|+|.|..|..
T Consensus 52 ~~~d~vi~is~sg~~~~--~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRE--LIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTTHH--HHHHHHHHHHTTSEEEEEESSTT
T ss_pred cccceeEeeeccccchh--hhhhhHHHHhcCCeEEEEeCCCC
Confidence 35678888888887764 78889999999999988876543
No 245
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=58.60 E-value=50 Score=34.59 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC
Q 018037 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (362)
Q Consensus 176 ~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN 230 (362)
.-+|-|.+.+. + ..++++..|=|++|. .-++..|..-+.|+|+|+-.-
T Consensus 52 ~~mAdgyar~t---g-~gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~~ 99 (539)
T TIGR03393 52 AYAADGYARCK---G-AAALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGAP 99 (539)
T ss_pred HHHhhhhhhhc---C-ceEEEEecCccHHHH---hhHHHHHhhccCCEEEEECCC
Confidence 34455666543 3 256777789998773 234667889999999998543
No 246
>PRK11032 hypothetical protein; Provisional
Probab=49.62 E-value=56 Score=29.04 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018037 321 IERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKE 359 (362)
Q Consensus 321 i~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~~ 359 (362)
|...++++.+.|-+|++|++.+.+=++..+++..+....
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~ 68 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEE 68 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999999999999988765443
No 247
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=49.41 E-value=2.5e+02 Score=27.00 Aligned_cols=82 Identities=12% Similarity=0.017 Sum_probs=52.0
Q ss_pred eEEEEeCCcc--cccchHHHHHHHHHhCCCCeEEEEEcCC-c--cccccccc--ccCCc-hH--hhhcCCcceEEEeCCC
Q 018037 194 VTFALYGDGA--ANQGQLFEALNIAALWDLPAILVCENNH-Y--GMGTAEWR--AAKSP-SY--YKRGDYVPGLKVDGMD 263 (362)
Q Consensus 194 vvv~~~GDGa--~~~G~~~Ealn~A~~~~LPvIfVv~NN~-~--gi~t~~~~--~~~~~-~~--~~~g~gi~g~~VdG~D 263 (362)
.++.++.||. .++|...+.+.-|...++-++||+.+|. - +|--.... ..... .+ +-..|.+|...|= +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7899999999 8888877778888888998887776664 2 22211000 00001 11 1134777876553 58
Q ss_pred HHHHHHHHHHHHH
Q 018037 264 ALAVKQACKFAKE 276 (362)
Q Consensus 264 ~~av~~a~~~A~~ 276 (362)
+.++-+++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 8888877776653
No 248
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=46.89 E-value=67 Score=33.78 Aligned_cols=47 Identities=32% Similarity=0.381 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEc
Q 018037 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (362)
Q Consensus 177 p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~N 229 (362)
-+|.|.+.+. ++-.++++..|=|.+| ..-++..|...+.|+|+|.-.
T Consensus 61 ~aAdgyar~t---g~~~v~~vt~GpG~~N---~l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 61 FLALGLAKAS---KRPVAVIVTSGTAVAN---LYPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHHhh---CCCEEEEECCccHHHh---hhHHHHHHhhcCCcEEEEECC
Confidence 3456666543 3445677777888887 345577888999999999754
No 249
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=44.13 E-value=1.7e+02 Score=34.21 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=52.9
Q ss_pred HHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHh-hhcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEE
Q 018037 209 LFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYY-KRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMIL 286 (362)
Q Consensus 209 ~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~-~~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lI 286 (362)
.+|.|-.++-..+|+|+++.+-.+.-. +........|+. .|.-|. +.+-..++.++++..-.|...+.+ ..|+++
T Consensus 89 M~e~l~~~ag~~~P~Vi~va~R~~~~~-~~~i~~dh~Dv~~~R~~G~--ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~ 165 (1165)
T TIGR02176 89 MIPNMYKIAGELLPCVFHVSARAIAAH-ALSIFGDHQDVMAARQTGF--AMLASSSVQEVMDLALVAHLATIEARVPFMH 165 (1165)
T ss_pred HHHHHHHHHhccCCEEEEEecCCCCCC-CCccCCCchHHHHhhcCCe--EEEeCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 577776666668999888877544321 111111112332 244444 334456888888888888877777 889999
Q ss_pred EEEEecCCCCC
Q 018037 287 EMDTYRYHGHS 297 (362)
Q Consensus 287 e~~tyR~~GHs 297 (362)
-...+|. +|.
T Consensus 166 ~~Dgf~t-sh~ 175 (1165)
T TIGR02176 166 FFDGFRT-SHE 175 (1165)
T ss_pred EecCcee-ccc
Confidence 8887775 454
No 250
>PRK13683 hypothetical protein; Provisional
Probab=42.75 E-value=38 Score=26.93 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=26.7
Q ss_pred eCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018037 260 DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (362)
Q Consensus 260 dG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~G 295 (362)
+-.|..++|+-++.|++. +.|-+||+.|.+..+
T Consensus 21 e~edA~alYq~I~~am~s---g~P~llELtCek~~~ 53 (87)
T PRK13683 21 EAEDAEALYQQIRQAMRS---GNPRLLELTCEKVED 53 (87)
T ss_pred cHHHHHHHHHHHHHHHhc---CCCcEEEEEecCcCC
Confidence 445788899888888863 889999999988554
No 251
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=38.34 E-value=71 Score=26.21 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=32.8
Q ss_pred CCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 190 ~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
+++.++|++.--|...+ ..+++..|...+.|+|.|..|..
T Consensus 46 ~~~dl~I~iS~SG~t~~--~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKE--TVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 45678888888888765 88999999999999998887644
No 252
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=37.78 E-value=2.9e+02 Score=25.54 Aligned_cols=78 Identities=21% Similarity=0.177 Sum_probs=41.4
Q ss_pred CCCeEEEEeCCcccccc-hHH-HHHHHHHhCCCCeEEEEEcCCccccccccccc-CCchHhhhc-CCcce-EEEeCCCHH
Q 018037 191 DETVTFALYGDGAANQG-QLF-EALNIAALWDLPAILVCENNHYGMGTAEWRAA-KSPSYYKRG-DYVPG-LKVDGMDAL 265 (362)
Q Consensus 191 ~~~vvv~~~GDGa~~~G-~~~-Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~-~~~~~~~~g-~gi~g-~~VdG~D~~ 265 (362)
-.+.||-+.|||--|+| .-. .+-..+...++ +| |+..|........ .-..|+... .|-|+ +.+-.++..
T Consensus 115 ~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi-tI-----NgL~I~~~~~~~~~~L~~yy~~~VIgGpgAFV~~a~~~~ 188 (205)
T PF06707_consen 115 CWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI-TI-----NGLAILDDDPFGGADLDAYYRRCVIGGPGAFVETARGFE 188 (205)
T ss_pred CceEEEEECCCCCCCCCCCccHHHHHHHHHCCe-EE-----eeeEecCCCCCccccHHHHHhhhcccCCCceEEEcCCHH
Confidence 35789999999999999 333 33333434443 11 2333322211000 123455532 44444 444556777
Q ss_pred HHHHHHHHH
Q 018037 266 AVKQACKFA 274 (362)
Q Consensus 266 av~~a~~~A 274 (362)
+..+|+++=
T Consensus 189 df~~AirrK 197 (205)
T PF06707_consen 189 DFAEAIRRK 197 (205)
T ss_pred HHHHHHHHH
Confidence 877777653
No 253
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=37.37 E-value=2.2e+02 Score=25.36 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=46.2
Q ss_pred CccccchhHHHHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHh
Q 018037 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYY 248 (362)
Q Consensus 169 ~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~ 248 (362)
.|.+|.+.+-.+...+|.+. ..=.-+|+++| +..... ....+..-+.|++++.-.+. + +
T Consensus 100 ig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg-~~~~~~----~~~~~~~~~~P~l~~~g~~D-------------~-~- 158 (218)
T PF01738_consen 100 IGVVGFCWGGKLALLLAARD-PRVDAAVSFYG-GSPPPP----PLEDAPKIKAPVLILFGEND-------------P-F- 158 (218)
T ss_dssp EEEEEETHHHHHHHHHHCCT-TTSSEEEEES--SSSGGG----HHHHGGG--S-EEEEEETT--------------T-T-
T ss_pred EEEEEEecchHHhhhhhhhc-cccceEEEEcC-CCCCCc----chhhhcccCCCEeecCccCC-------------C-C-
Confidence 47888877777666666532 22356888888 211111 13344555677766653221 0 0
Q ss_pred hhcCCcceEEEeCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCC
Q 018037 249 KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPG 302 (362)
Q Consensus 249 ~~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~~ 302 (362)
.+++. .+.+++++.. .+.+ +++.+|-..+|...++.
T Consensus 159 -------------~~~~~-~~~~~~~l~~--~~~~--~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 159 -------------FPPEE-VEALEEALKA--AGVD--VEVHVYPGAGHGFANPS 194 (218)
T ss_dssp -------------S-HHH-HHHHHHHHHC--TTTT--EEEEEETT--TTTTSTT
T ss_pred -------------CChHH-HHHHHHHHHh--cCCc--EEEEECCCCcccccCCC
Confidence 01222 2333344431 1333 68899999999887654
No 254
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=37.27 E-value=64 Score=26.15 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=28.1
Q ss_pred CeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCc
Q 018037 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY 232 (362)
Q Consensus 193 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~ 232 (362)
.++|+.+.+--...|..+| +-+|...+.||+.++.+...
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 3555555554466788888 88999999999999987765
No 255
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=36.89 E-value=1.3e+02 Score=27.48 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=34.3
Q ss_pred CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 189 ~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
..++.+++++.+.|.... +.+++..|...+.|+|.+..+.+
T Consensus 107 ~~~gDvli~iS~SG~s~~--v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRD--IVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CCCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 357789999999998764 88999999999999998886543
No 256
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=36.27 E-value=80 Score=34.49 Aligned_cols=76 Identities=26% Similarity=0.293 Sum_probs=44.5
Q ss_pred CeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhcCCcceEEEeCCCHHHHHHHHH
Q 018037 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272 (362)
Q Consensus 193 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~gi~g~~VdG~D~~av~~a~~ 272 (362)
.+.++=--||-... .+||+.++..|++||||=-- ||- |-.|++|- ...++|.++++
T Consensus 159 gVpvVPGTpgPitt--~~EA~eF~k~yG~PvI~KAA---yGG------------------GGRGmRvV-r~~e~vee~f~ 214 (1176)
T KOG0369|consen 159 GVPVVPGTPGPITT--VEEALEFVKEYGLPVIIKAA---YGG------------------GGRGMRVV-RSGEDVEEAFQ 214 (1176)
T ss_pred CCCccCCCCCCccc--HHHHHHHHHhcCCcEEEeec---ccC------------------CCcceEEe-echhhHHHHHH
Confidence 34555555666554 89999999999999987542 211 22233331 23456667777
Q ss_pred HHHHHhcc---CCCEEEEEEEec
Q 018037 273 FAKEHALK---NGPMILEMDTYR 292 (362)
Q Consensus 273 ~A~~~ar~---~gP~lIe~~tyR 292 (362)
+|-..++. +|.+|||=-..|
T Consensus 215 Ra~SEA~aaFGnG~~FvEkF~ek 237 (1176)
T KOG0369|consen 215 RAYSEALAAFGNGTLFVEKFLEK 237 (1176)
T ss_pred HHHHHHHHhcCCceeeHHhhhcC
Confidence 66655543 555555543333
No 257
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=36.07 E-value=73 Score=26.02 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=31.1
Q ss_pred CCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEc
Q 018037 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (362)
Q Consensus 190 ~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~N 229 (362)
+++.++|++.-.|...+ ..+++..|...+.|+|.|..|
T Consensus 42 ~~~dl~I~iS~SG~t~e--~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 42 DRKTLVIAVSYSGNTEE--TLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCCCEEEEEECCCCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 46678888888888775 788899999999999888754
No 258
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=34.43 E-value=45 Score=24.10 Aligned_cols=19 Identities=37% Similarity=0.739 Sum_probs=15.4
Q ss_pred HHHHHHHcCCCCHHHHHHH
Q 018037 324 IRKLILAHDLATEKELKDI 342 (362)
Q Consensus 324 ~~~~L~~~g~~t~~el~~i 342 (362)
+|+-+++.|++|+++++++
T Consensus 28 vre~v~~~g~lt~ee~d~l 46 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDEL 46 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 5667889999999999886
No 259
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.41 E-value=90 Score=25.38 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=31.9
Q ss_pred CCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 190 ~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
+++.++|++.--|...+ +.+++..|...+.|+|.|..|..
T Consensus 46 ~~~d~vi~iS~sG~t~~--~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETDE--LLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEeCCCC
Confidence 46677888877776654 88999999999999998888754
No 260
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=33.32 E-value=96 Score=25.13 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=32.1
Q ss_pred CCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC
Q 018037 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (362)
Q Consensus 190 ~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN 230 (362)
+++.++|++.-.|...+ ..+++..|...+.|+|.|..|.
T Consensus 45 ~~~d~~I~iS~sG~t~e--~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSGETAD--TLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCcCCHH--HHHHHHHHHHcCCeEEEEECCC
Confidence 46678888888888775 7889999999999999888764
No 261
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.76 E-value=90 Score=27.84 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=31.5
Q ss_pred hHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018037 246 SYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (362)
Q Consensus 246 ~~~~~g~gi~g~~VdG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (362)
.+.+|+||..++-++|.+-+.+.+.++..++ . +||..|+..
T Consensus 24 ~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~ 65 (179)
T COG1303 24 ALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFG 65 (179)
T ss_pred hhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEc
Confidence 4567899999999999876777777776664 4 888777654
No 262
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=32.43 E-value=83 Score=27.14 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 190 ~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
+++.++|++..-|...+ ..+++..|...+.|+|.|..|..
T Consensus 78 ~~~D~~i~iS~sG~t~~--~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKN--VLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 56788999999998764 88999999999999998887643
No 263
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=31.11 E-value=1.3e+02 Score=20.99 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 018037 322 ERIRKLILAHDLATEKELKDIEKEVRKEVDDA 353 (362)
Q Consensus 322 ~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a 353 (362)
..|+..|.+.|+ +++++++--++.|+.+.+.
T Consensus 14 ~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 14 LELRDELEEQGY-SEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhc
Confidence 458999999997 9999998888888876543
No 264
>PRK13936 phosphoheptose isomerase; Provisional
Probab=31.10 E-value=93 Score=28.13 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=34.9
Q ss_pred CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 189 ~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
.+++.++|++...|...+ +.+++..|...+.|+|.|..+++
T Consensus 109 ~~~~Dv~i~iS~sG~t~~--~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 109 GQPGDVLLAISTSGNSAN--VIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 357889999999998764 88999999999999999887653
No 265
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=30.97 E-value=70 Score=22.64 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=12.6
Q ss_pred CCCChhhHHhHhhcCCH
Q 018037 304 TYRTRDEISGVRQERDP 320 (362)
Q Consensus 304 ~YR~~~e~~~~~~~~DP 320 (362)
-||+.+|+..|.. -+|
T Consensus 20 C~RT~dEI~~W~~-~s~ 35 (51)
T PF06945_consen 20 CGRTLDEIRDWKS-MSD 35 (51)
T ss_pred CCCcHHHHHHHhh-CCH
Confidence 4899999999973 444
No 266
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=30.74 E-value=99 Score=27.87 Aligned_cols=41 Identities=12% Similarity=0.270 Sum_probs=34.6
Q ss_pred CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 189 ~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
..++.++|++...|.... +.+++..|...+.|+|.|..|+.
T Consensus 109 ~~~~Dv~I~iS~SG~t~~--~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 109 GREGDVLLGISTSGNSGN--IIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEeCCCC
Confidence 357789999999998764 88999999999999999887653
No 267
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=30.59 E-value=1.3e+02 Score=27.55 Aligned_cols=39 Identities=36% Similarity=0.503 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018037 318 RDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKA 357 (362)
Q Consensus 318 ~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A 357 (362)
||-...+++. ...|.||||+.+..++++++--++.++..
T Consensus 135 rda~d~iKK~-~K~~~isEDe~k~~e~~iQKlTd~yi~~i 173 (187)
T COG0233 135 RDANDKIKKL-EKDKEISEDEVKKAEEEIQKLTDEYIKKI 173 (187)
T ss_pred HHHHHHHHHH-hccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666654 56678999999999999988777666554
No 268
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=30.57 E-value=1.2e+02 Score=29.57 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=35.8
Q ss_pred cccchhHHHHHHHHHHhhC---CCCCeEEEEeCCcc--cccchHHHHHHHHH---------hCCCCeEEEEEcCCcc
Q 018037 171 IVGAQIPLGCGLAFAQKYS---KDETVTFALYGDGA--ANQGQLFEALNIAA---------LWDLPAILVCENNHYG 233 (362)
Q Consensus 171 ~lG~~~p~A~G~A~A~k~~---~~~~vvv~~~GDGa--~~~G~~~Ealn~A~---------~~~LPvIfVv~NN~~g 233 (362)
-+|.+++.++|..+..-.. ..+-+.|+|.--|+ +++|. ..-|+||. ..+||.|.|+.|=-.|
T Consensus 133 FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~-lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtG 208 (294)
T COG0777 133 FMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGI-LSLMQMAKTSAALKRLSEAGLPYISVLTDPTTG 208 (294)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHH-HHHHHHHHHHHHHHHHHhcCCceEEEecCCCcc
Confidence 3455555566666543221 12345556655555 77774 33455554 4589999999886553
No 269
>PRK13938 phosphoheptose isomerase; Provisional
Probab=30.40 E-value=1.4e+02 Score=27.18 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=35.4
Q ss_pred hCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 188 YSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 188 ~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
...++.++|++..-|.+.+ +.+++..|...+.|+|.+..|.+
T Consensus 110 ~~~~~DllI~iS~SG~t~~--vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 110 SARPGDTLFAISTSGNSMS--VLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred cCCCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 3457788999999988775 88999999999999999987654
No 270
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=30.20 E-value=92 Score=29.53 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.6
Q ss_pred CCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 190 ~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
+++.++|.+...|.+.. +.+++..|...+.|+|.|+.|..
T Consensus 117 ~~~DvvI~IS~SG~T~~--vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGRTPY--VLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 56788999999999875 89999999999999998887654
No 271
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.79 E-value=1.4e+02 Score=24.91 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=29.3
Q ss_pred CCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC
Q 018037 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (362)
Q Consensus 191 ~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN 230 (362)
++.++|.+.++|...+ ...+.+..+...+.|+|.|..++
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 5668888888886543 36677888888899988887664
No 272
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=29.69 E-value=60 Score=25.72 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Q 018037 321 IERIRKLILAHDLATEKELKDIEKEV 346 (362)
Q Consensus 321 i~~~~~~L~~~g~~t~~el~~i~~e~ 346 (362)
+..+-.+|+++|++|+++.+.|+.+-
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~ 41 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKA 41 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCC
Confidence 34477889999999999999997743
No 273
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=27.48 E-value=1e+02 Score=25.60 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018037 320 PIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAK 356 (362)
Q Consensus 320 Pi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~ 356 (362)
=+.-+.+. .++|+++++|.++.+.|++..+-+..+.
T Consensus 44 qL~ELe~d-~~~G~l~~~e~~~~~~El~rrLL~d~~~ 79 (117)
T TIGR03142 44 RLAELERD-LAEGLLDEAEAEAARAELQRRLLADIPA 79 (117)
T ss_pred HHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHCccc
Confidence 33444444 3579999999999999999987665443
No 274
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.21 E-value=69 Score=25.19 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHH
Q 018037 322 ERIRKLILAHDLATEKELKDIEK 344 (362)
Q Consensus 322 ~~~~~~L~~~g~~t~~el~~i~~ 344 (362)
..+-.+|+++|++|+++.+.|+.
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~ 41 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQA 41 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHc
Confidence 44778899999999999999976
No 275
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=26.83 E-value=1.5e+02 Score=25.89 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018037 319 DPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAK 358 (362)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~ 358 (362)
+-+...++++.+.|-+|++|++.+.+-++..+.+..+...
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~ 57 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYE 57 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999999999988776543
No 276
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.55 E-value=1.7e+02 Score=25.93 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=35.2
Q ss_pred HHHHHHHHHhccCCCEEEEEEEe----cCCCCCCCCCCCCCCChhhHHhHhhcCCHHHHHHHHHHHcC
Q 018037 269 QACKFAKEHALKNGPMILEMDTY----RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332 (362)
Q Consensus 269 ~a~~~A~~~ar~~gP~lIe~~ty----R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g 332 (362)
+.+..|+.+ |..||++||+..| ++.--+-.|-+++--=+.-++.+. ..||...+-+++.++-
T Consensus 70 ELiENAVKf-ra~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it-~gDP~dLlieRiEanA 135 (184)
T COG5381 70 ELIENAVKF-RATGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVIT-EGDPLDLLIERIEANA 135 (184)
T ss_pred HHHHhhhcc-cCCCcEEEEEEeccceEEEEecccCCCccHHHHHHHHHHHh-cCChHHHHHHHHHhhc
Confidence 344566655 3488999999864 433334445443210011223333 5899998888876643
No 277
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=25.72 E-value=1.1e+02 Score=23.94 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 018037 318 RDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDA 353 (362)
Q Consensus 318 ~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a 353 (362)
.+-|.-+=..|++.++++++|.+.|..+-....+.|
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dka 50 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKA 50 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHH
Confidence 456677778899999999999999988643333333
No 278
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=25.71 E-value=2.7e+02 Score=20.27 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018037 321 IERIRKLILAHDL-ATEKELKDIEKEVRKEVDDAIAKAKEGR 361 (362)
Q Consensus 321 i~~~~~~L~~~g~-~t~~el~~i~~e~~~~v~~a~~~A~~~p 361 (362)
++-.++.|.+.|| ++-+.++-+-.=+-+.+++|++.-+++.
T Consensus 14 lPEak~~L~k~GIeLsme~~qP~m~L~~~VM~eAYElG~~da 55 (56)
T PF10815_consen 14 LPEAKEELDKKGIELSMEMLQPLMQLLTKVMNEAYELGKADA 55 (56)
T ss_pred hHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4458899999999 9999999999999999999998776543
No 279
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=25.56 E-value=1.7e+02 Score=21.43 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=22.2
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 018037 326 KLILAHDLATEKELKDIEKEVRKEVDDA 353 (362)
Q Consensus 326 ~~L~~~g~~t~~el~~i~~e~~~~v~~a 353 (362)
...++.|.+|.++-+.|.+.+....+..
T Consensus 25 dk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 25 DKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999998888776543
No 280
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.50 E-value=1.1e+02 Score=31.42 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhcCCCCCEEEcC
Q 018037 73 TMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120 (362)
Q Consensus 73 ~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~l~~~D~v~~~ 120 (362)
..+.||+.+..+..... -+-.+.|..|+...+.+.++++|.|+..
T Consensus 62 tv~~lE~~la~leg~~~---av~~~SG~aAi~~al~all~~GD~VI~~ 106 (432)
T PRK06702 62 TLAAFEQKLAELEGGVG---AVATASGQAAIMLAVLNICSSGDHLLCS 106 (432)
T ss_pred HHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHhcCCCCEEEEC
Confidence 56889999988874421 1234789999998888889999988764
No 281
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=25.45 E-value=2.6e+02 Score=26.37 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=38.1
Q ss_pred hHHHHHHHHH-hCCCC-eE-EEEE-cC-Cc--ccccccc-cccCCchHhhhc--CCcceEEEeC-CCHHHHHHHHHHHHH
Q 018037 208 QLFEALNIAA-LWDLP-AI-LVCE-NN-HY--GMGTAEW-RAAKSPSYYKRG--DYVPGLKVDG-MDALAVKQACKFAKE 276 (362)
Q Consensus 208 ~~~Ealn~A~-~~~LP-vI-fVv~-NN-~~--gi~t~~~-~~~~~~~~~~~g--~gi~g~~VdG-~D~~av~~a~~~A~~ 276 (362)
.+.|||.+|+ ....| +| =+|. +| .| |.-.... -...-+.....| .|-..+.|++ .|+.++.+-+
T Consensus 150 r~~eAlaLAsKV~~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~~G~~~GGRvffv~~~~~l~~~i~yL----- 224 (232)
T TIGR01204 150 RTVEALALAFKVLFCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKEKGDELGGRVFFVSRKNELSEYIHCL----- 224 (232)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCCCCHHHHHHHH-----
Confidence 6899999996 55688 55 2343 33 35 2211111 111112222333 5666788887 4665554322
Q ss_pred HhccCCCEEEE
Q 018037 277 HALKNGPMILE 287 (362)
Q Consensus 277 ~ar~~gP~lIe 287 (362)
++.|+||+
T Consensus 225 ---E~~pvLI~ 232 (232)
T TIGR01204 225 ---EQKPILIE 232 (232)
T ss_pred ---hcCcEEeC
Confidence 27899884
No 282
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=25.27 E-value=47 Score=28.40 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCCeEEEEEcCCcc
Q 018037 211 EALNIAALWDLPAILVCENNHYG 233 (362)
Q Consensus 211 Ealn~A~~~~LPvIfVv~NN~~g 233 (362)
|.++.|..+++|+|||++-+++-
T Consensus 1 ei~~~a~r~~i~vi~Van~~h~~ 23 (130)
T PF02639_consen 1 EIIRVAKRYGIPVIFVANYSHRL 23 (130)
T ss_pred CHHHHHHHHCCEEEEEeCCCccC
Confidence 35788999999999999877653
No 283
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=25.05 E-value=2e+02 Score=26.06 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=25.4
Q ss_pred eEEEEeCCc-ccccchHHHHHHHHHhCCCCeEEEE
Q 018037 194 VTFALYGDG-AANQGQLFEALNIAALWDLPAILVC 227 (362)
Q Consensus 194 vvv~~~GDG-a~~~G~~~Ealn~A~~~~LPvIfVv 227 (362)
.+|+|+|++ ...+|.++++....+..++.|-+|.
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 567777776 6788889888888888887765544
No 284
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=25.03 E-value=74 Score=25.64 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Q 018037 323 RIRKLILAHDLATEKELKDIEKE 345 (362)
Q Consensus 323 ~~~~~L~~~g~~t~~el~~i~~e 345 (362)
.+..+|+++|++|+++.+.|+.+
T Consensus 25 ~v~~~L~~~gIlT~~~~e~I~a~ 47 (94)
T cd08327 25 LVIQYLYQEGILTESHVEEIESQ 47 (94)
T ss_pred HHHHHHHhCCCCCHHHHHHHHcc
Confidence 46678999999999999999863
No 285
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=24.14 E-value=1.1e+02 Score=25.92 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 018037 321 IERIRKLILAHDLATEKELKDIEKEVRKEVDDA 353 (362)
Q Consensus 321 i~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a 353 (362)
+..|.+.|.++| +++|.+|.++++++=
T Consensus 103 ~~~~~~kLk~AG------idkV~~E~QkQlda~ 129 (134)
T PF12010_consen 103 LPEFNEKLKAAG------IDKVIAELQKQLDAF 129 (134)
T ss_pred HHHHHHHHHHhC------hHHHHHHHHHHHHHH
Confidence 566888888888 788999999998764
No 286
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.53 E-value=1.6e+02 Score=25.64 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=32.3
Q ss_pred CCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 190 ~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
+++.++|++.--|.+.+ +.+++..|...+.|+|.|..|..
T Consensus 71 ~~~Dv~I~iS~sG~t~~--~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 71 KKGDLLIAISGSGETES--LVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred CCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 46678888887777664 88999999999999998887654
No 287
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=23.31 E-value=2e+02 Score=25.81 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018037 318 RDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAK 358 (362)
Q Consensus 318 ~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~ 358 (362)
+|-...+++.. ..+.+++|+.+.+++++++..++-++...
T Consensus 124 r~~~~~iKk~~-k~~~iseD~~k~~~~~iQkltd~~i~~id 163 (176)
T TIGR00496 124 RDANDKVKKLE-KDKEISEDEERRLQEEIQKLTDEYIKKID 163 (176)
T ss_pred HHHHHHHHHHh-hcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666543 45679999999999999888777666543
No 288
>PLN02522 ATP citrate (pro-S)-lyase
Probab=23.29 E-value=4.4e+02 Score=28.51 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=50.9
Q ss_pred CCCCeEEEEeCC-cccccchHHHHHHHHHhCCCCeEEEEEcCCc---cccccccc-c-cCCch------Hhh--hcCCcc
Q 018037 190 KDETVTFALYGD-GAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWR-A-AKSPS------YYK--RGDYVP 255 (362)
Q Consensus 190 ~~~~vvv~~~GD-Ga~~~G~~~Ealn~A~~~~LPvIfVv~NN~~---gi~t~~~~-~-~~~~~------~~~--~g~gi~ 255 (362)
.++..+|+++|+ |...+-.|.|++.-+. .+-|||.++---.- +-...... . ....+ +.+ +-.|+
T Consensus 220 Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv- 297 (608)
T PLN02522 220 IPQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGA- 297 (608)
T ss_pred CCCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCC-
Confidence 356679999999 8888777888766554 67898876642211 00000000 0 00111 111 23676
Q ss_pred eEEEeCCCHHHHHHHHHHHHHHhcc
Q 018037 256 GLKVDGMDALAVKQACKFAKEHALK 280 (362)
Q Consensus 256 g~~VdG~D~~av~~a~~~A~~~ar~ 280 (362)
++++ +++++.++++++++....
T Consensus 298 -~vv~--s~~El~~~~~~~~~~~~~ 319 (608)
T PLN02522 298 -IVPT--SFEALEAAIKETFEKLVE 319 (608)
T ss_pred -eEeC--CHHHHHHHHHHHHHHHHh
Confidence 5664 888999999998876543
No 289
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=23.29 E-value=2e+02 Score=28.98 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018037 262 MDALAVKQACKFAKEHALK--NGPMILEMDT 290 (362)
Q Consensus 262 ~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (362)
..|..|-.++++|+..+|+ .||+||++-.
T Consensus 134 ~epalvp~v~qkafhlmrs~rpgpvlidlp~ 164 (592)
T COG3960 134 REPALVPRVLQQAFHLMRSGRPGPVLIDLPF 164 (592)
T ss_pred cchhhhHHHHHHHHHHHhcCCCCCeEEeccc
Confidence 5677888999999999998 7999998753
No 290
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=23.21 E-value=5.3e+02 Score=25.29 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=21.2
Q ss_pred CeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC
Q 018037 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (362)
Q Consensus 193 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN 230 (362)
.++|++.|+=.+. -.+.|.+..+...+++ ++|+.|.
T Consensus 132 ~v~iSl~GEPlL~-p~l~eli~~~k~~Gi~-~~L~TNG 167 (322)
T PRK13762 132 HVAISLSGEPTLY-PYLPELIEEFHKRGFT-TFLVTNG 167 (322)
T ss_pred EEEEeCCccccch-hhHHHHHHHHHHcCCC-EEEECCC
Confidence 3444444433343 4688888888877773 4555554
No 291
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=22.90 E-value=1.2e+02 Score=28.41 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=22.5
Q ss_pred hHHhHhhcCCHHHHHHHHHHHcCCCCHHHHHHHH
Q 018037 310 EISGVRQERDPIERIRKLILAHDLATEKELKDIE 343 (362)
Q Consensus 310 e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~ 343 (362)
=|+.|. .-+.+.|+++|++|++||++..
T Consensus 68 YYe~Wl------~ale~lLvekG~it~~EL~ar~ 95 (222)
T PF02211_consen 68 YYERWL------AALEKLLVEKGVITAEELDARA 95 (222)
T ss_dssp HHHHHH------HHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHH------HHHHHHHHHcCCCCHHHHHHHH
Confidence 367774 5699999999999999999863
No 292
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=22.75 E-value=3.1e+02 Score=27.14 Aligned_cols=107 Identities=20% Similarity=0.190 Sum_probs=58.5
Q ss_pred CeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHh-hhcCCcceEEEe-CCCHHHHHHH
Q 018037 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYY-KRGDYVPGLKVD-GMDALAVKQA 270 (362)
Q Consensus 193 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~-~~g~gi~g~~Vd-G~D~~av~~a 270 (362)
.-+++.+| +.+..++......|+..++.+|++++|-- .....+.++- .+-+|.....+| |.|+. +..-
T Consensus 64 ~dTlvT~G--giQSNh~r~tAavA~~lGl~~v~ile~~~-------~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~-~~~~ 133 (323)
T COG2515 64 ADTLVTYG--GIQSNHVRQTAAVAAKLGLKCVLILENIE-------ANYLLNGNLLLSKLMGAEVRAVDAGTDIG-INAS 133 (323)
T ss_pred CcEEEEec--ccchhHHHHHHHHHHhcCCcEEEEEeccc-------cccccccchhhhhhcCceEEEecCCCChh-hchh
Confidence 33555554 55444677778889999999999999843 0001111221 122555555554 45553 3344
Q ss_pred HHHHHHHhcc--CCCEEEEEEEecCCC-CCCCCCCCCCCChhhHHhHh
Q 018037 271 CKFAKEHALK--NGPMILEMDTYRYHG-HSMSDPGSTYRTRDEISGVR 315 (362)
Q Consensus 271 ~~~A~~~ar~--~gP~lIe~~tyR~~G-Hs~~D~~~~YR~~~e~~~~~ 315 (362)
++...+.+++ ++|.+|-. .| |..+-.+ -.|...|+..|.
T Consensus 134 ~~~~~e~~~~~g~kpyvIp~-----GG~~~~g~lG-yv~~a~Ei~~Q~ 175 (323)
T COG2515 134 AEELAEEVRKQGGKPYVIPE-----GGSSPLGALG-YVRLALEIAEQA 175 (323)
T ss_pred hHHHHHHHHhcCCCCcEecc-----CCcCcccccc-HHHHHHHHHHHH
Confidence 4455555554 67887743 44 3333333 235566666654
No 293
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=22.70 E-value=2.3e+02 Score=29.11 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=11.8
Q ss_pred HHHHHhCCCCeEEEEEcCCc
Q 018037 213 LNIAALWDLPAILVCENNHY 232 (362)
Q Consensus 213 ln~A~~~~LPvIfVv~NN~~ 232 (362)
-.++++.++.+++++-+++.
T Consensus 142 aaya~rag~~v~Vl~P~g~v 161 (411)
T COG0498 142 AAYAARAGLKVFVLYPKGKV 161 (411)
T ss_pred HHHhccCCCeEEEEecCCCC
Confidence 34566667776666655443
No 294
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=22.39 E-value=1e+02 Score=24.50 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Q 018037 322 ERIRKLILAHDLATEKELKDIEKE 345 (362)
Q Consensus 322 ~~~~~~L~~~g~~t~~el~~i~~e 345 (362)
..+-.+|++.|++|+++.+.|+..
T Consensus 23 ~~v~~~L~~~gvlt~~~~~~I~~~ 46 (90)
T cd08332 23 DELLIHLLQKDILTDSMAESIMAK 46 (90)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHcC
Confidence 447788999999999999999774
No 295
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=22.12 E-value=2e+02 Score=24.40 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=60.2
Q ss_pred HHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHH--HHHHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHH
Q 018037 138 FSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPL--GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215 (362)
Q Consensus 138 lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~--A~G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~ 215 (362)
+++++|++.... +|.+.+.-+..++- ..+.|..++. +++..++.+- .+.=-..+.||=.+-+.++.-.+..
T Consensus 4 i~~ilG~kg~~~---~gv~~v~~~R~dl~--vt~~G~~~~~~~~l~~~~aF~~--~~~G~A~~~Gd~vll~~EV~pvi~a 76 (123)
T PF07485_consen 4 IARILGRKGTAS---GGVYKVTIPRNDLK--VTIDGRRLPPPMGLTSWIAFEP--DGDGKAMVMGDFVLLEDEVNPVISA 76 (123)
T ss_pred HHHHhCCCceee---CCEEEEEEccCCce--EEECCEEcCCccccceeEEEEE--CCCCcEEEeecEEecHHHHHHHHHH
Confidence 456777654333 45555544432221 1233444433 2333333222 1121345667777777777777776
Q ss_pred HHhCCCCeEEEEEcCCcccccccccccCCchHhhhcCCcceEEEeC-CCHHHHHHHHHHHHH
Q 018037 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDG-MDALAVKQACKFAKE 276 (362)
Q Consensus 216 A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~gi~g~~VdG-~D~~av~~a~~~A~~ 276 (362)
....++.|.-+- |+|-... |.+ |. +++.| .|+..+.+.++.|++
T Consensus 77 L~~~GI~vtAlH--NH~l~e~--------Prl----~y---mH~~~~gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 77 LRKNGIEVTALH--NHWLFEQ--------PRL----FY---MHIWGVGDPAKLARKVRAALD 121 (123)
T ss_pred HHHCCceEEEEe--cccccCC--------CCE----EE---EEEEecCCHHHHHHHHHHHHh
Confidence 667777665443 4543322 211 22 33333 289999999999886
No 296
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=21.51 E-value=2.5e+02 Score=27.25 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=38.2
Q ss_pred cchhHHHHHHHHHHhhCCC--CCeEEEEeCCcccccchHHHHHHHHHhCCCC------eEEEEEcCCc
Q 018037 173 GAQIPLGCGLAFAQKYSKD--ETVTFALYGDGAANQGQLFEALNIAALWDLP------AILVCENNHY 232 (362)
Q Consensus 173 G~~~p~A~G~A~A~k~~~~--~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP------vIfVv~NN~~ 232 (362)
|.+.-...|+--|.|..+. ....|+++|-|+.+.|...--+..-...+++ -|++|+-++.
T Consensus 3 GTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 3 GTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred hHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 4444455565556666654 3678999999999988544333333445873 6788866553
No 297
>PRK15482 transcriptional regulator MurR; Provisional
Probab=21.44 E-value=2.8e+02 Score=26.25 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=29.3
Q ss_pred CCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCC
Q 018037 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (362)
Q Consensus 190 ~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~ 231 (362)
+++.++|++.--|.+.+ +.+++..|...+.|+|.|..+..
T Consensus 181 ~~~Dv~i~iS~sg~t~~--~~~~~~~a~~~g~~iI~IT~~~~ 220 (285)
T PRK15482 181 KKGDVQIAISYSGSKKE--IVLCAEAARKQGATVIAITSLAD 220 (285)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 45667777777776664 77888888888888887776543
No 298
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=21.39 E-value=5.4e+02 Score=25.41 Aligned_cols=60 Identities=18% Similarity=0.105 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHhccccccccccCcchHHHHHHHHhc-CCCCCEEEc
Q 018037 57 VETTPKELLSFFRQMA--------TMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG-ITKKDSIIT 119 (362)
Q Consensus 57 ~~~s~e~l~~~y~~M~--------~~R~~e~~~~~l~~~g~i~gf~h~~~GqEa~~vg~~~~-l~~~D~v~~ 119 (362)
+.++.++...+.+.+. ..+.||+++.+++.... .+..+.|.+|+.+++... ++++|.|+.
T Consensus 10 p~~~~~e~~~~~~~l~~~~~~~g~~~~~le~~la~~~g~~~---~v~~~sgt~al~lal~al~~~~Gd~Viv 78 (379)
T PRK11658 10 PAMGDEELAAVKEVLRSGWITTGPKNQALEQAFCQLTGNQH---AIAVSSATAGMHITLMALGIGPGDEVIT 78 (379)
T ss_pred CCCCHHHHHHHHHHHHcCCccCCHhHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHHcCCCCCCEEEE
Confidence 4455666555544331 25799999998875432 123477999988877766 789997655
No 299
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=21.33 E-value=2.3e+02 Score=26.50 Aligned_cols=92 Identities=18% Similarity=0.180 Sum_probs=46.4
Q ss_pred CCeEEEEeCCccc----ccchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhcCCcceEEEeCCCHHHH
Q 018037 192 ETVTFALYGDGAA----NQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAV 267 (362)
Q Consensus 192 ~~vvv~~~GDGa~----~~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~gi~g~~VdG~D~~av 267 (362)
+.-.|.+=|=|+. +.. .--..+++.|++|||.|+--+- ++-.+......-..+++.-+.|+-+++-++..-
T Consensus 106 ~~d~vlVEGAGGl~vPl~~~--~~~~D~~~~~~lpvILV~~~~L---GtINHtlLt~eal~~~gl~l~G~I~n~~~~~~~ 180 (223)
T COG0132 106 KYDLVLVEGAGGLLVPLTEE--YTFADLAVQLQLPVILVVGIKL---GTINHTLLTVEALRARGLPLAGWVANGINPELD 180 (223)
T ss_pred ccCEEEEeCCCceeeecCCc--ccHHHHHHHcCCCEEEEecCCc---cHHHHHHHHHHHHHHCCCCEEEEEEccCCCchh
Confidence 3446788888882 333 2337789999999999984322 211111110111222444455666676444444
Q ss_pred HHHHHHHHHHhccCCCEEEEE
Q 018037 268 KQACKFAKEHALKNGPMILEM 288 (362)
Q Consensus 268 ~~a~~~A~~~ar~~gP~lIe~ 288 (362)
..+...+.-..+-+.|.+...
T Consensus 181 ~~~~~~~~l~~~~~~p~~g~~ 201 (223)
T COG0132 181 HYAEINATLLKRIGAPLLGII 201 (223)
T ss_pred HHHHHHHHHHHhcCCCccccc
Confidence 333333322111256655543
No 300
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=21.32 E-value=2.5e+02 Score=25.43 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018037 318 RDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAK 358 (362)
Q Consensus 318 ~DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~a~~~A~ 358 (362)
+|-...+++. ...|.+++|+.+..++++++..++-++..+
T Consensus 133 r~~~~~iKk~-~k~~~iseD~~k~~e~eiQkltd~~i~~id 172 (185)
T PRK00083 133 RDANDKLKKL-EKDKEISEDELKRAEDEIQKLTDKYIKKID 172 (185)
T ss_pred HHHHHHHHHH-hhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666654 356779999999999999888777666543
No 301
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=21.25 E-value=1.9e+02 Score=20.56 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 018037 333 LATEKELKDIEKEVRKEVDDAIAKA 357 (362)
Q Consensus 333 ~~t~~el~~i~~e~~~~v~~a~~~A 357 (362)
-.|++|++.-+++....|..++..|
T Consensus 8 qpS~eE~k~~e~~A~~Tvk~a~~~a 32 (49)
T PF10642_consen 8 QPSEEEIKAAEAQANFTVKNAAAAA 32 (49)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998877654
No 302
>PRK00124 hypothetical protein; Validated
Probab=21.23 E-value=1.7e+02 Score=25.76 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=28.2
Q ss_pred EEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcCCcc
Q 018037 196 FALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG 233 (362)
Q Consensus 196 v~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN~~g 233 (362)
|.+-+|+.- ...|.+..|..+++|++||+.-|++-
T Consensus 3 I~VDADACP---Vk~~i~r~a~r~~i~v~~Vas~n~~~ 37 (151)
T PRK00124 3 IYVDADACP---VKDIIIRVAERHGIPVTLVASFNHFL 37 (151)
T ss_pred EEEECCCCc---HHHHHHHHHHHHCCeEEEEEeCCccc
Confidence 566677765 46788899999999999999888763
No 303
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=21.00 E-value=1.1e+02 Score=23.77 Aligned_cols=27 Identities=11% Similarity=0.281 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 018037 320 PIERIRKLILAHDLATEKELKDIEKEV 346 (362)
Q Consensus 320 Pi~~~~~~L~~~g~~t~~el~~i~~e~ 346 (362)
.+.-+-..|++.|++|+++.+.|.++-
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~~ 42 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAEK 42 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcCC
Confidence 345566789999999999999997643
No 304
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.92 E-value=4e+02 Score=21.89 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEc
Q 018037 181 GLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (362)
Q Consensus 181 G~A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~N 229 (362)
...+...........|.+-+|.....+.+-+.++.+...++.-|-++.|
T Consensus 73 ~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 73 GTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3334333333445678899999999999999999999999987666554
No 305
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=20.91 E-value=9.6e+02 Score=24.97 Aligned_cols=148 Identities=15% Similarity=0.058 Sum_probs=68.2
Q ss_pred HHHcCCCHHHHHHHHhCCCCCCCCCCCCccCCccCCCCcccCCccccchhHHHHHHHHHHhhCCCCCeEEEEeCCccc-c
Q 018037 127 FLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-N 205 (362)
Q Consensus 127 ~l~rG~~~~~~lael~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa~-~ 205 (362)
++..|.|+..+++-+-.-.. ..||--..+...+ .++--..+ .|.|+=.++..-....+..++|++|=|+= .
T Consensus 301 ~~~lG~~~e~i~~~l~~~~~--v~GRmE~v~~~~~--~v~VDyAH----nPd~le~~L~~~~~~~~g~li~VfG~gGDrD 372 (475)
T COG0769 301 ALALGVDLEDILAGLETLKP--VPGRMELVNIGGK--LVIVDYAH----NPDGLEKALRAVRLHAAGRLIVVFGCGGDRD 372 (475)
T ss_pred HHHcCCCHHHHHHHHHhcCC--CCCcceEecCCCC--eEEEEecc----ChHHHHHHHHHHHhhcCCcEEEEECccCCCC
Confidence 34569999988876543221 3455444444322 22211222 23343333322111122235565554441 2
Q ss_pred cchHHHHHHHHHhCCCCeEEEEEcCCcccccccccccCCchHhhhcCCcceEE-EeCCCHHHHHHHHHHHHHHhccCCCE
Q 018037 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPM 284 (362)
Q Consensus 206 ~G~~~Ealn~A~~~~LPvIfVv~NN~~gi~t~~~~~~~~~~~~~~g~gi~g~~-VdG~D~~av~~a~~~A~~~ar~~gP~ 284 (362)
.+-.+. |...+...-++++|..+|--+-. . ..-......|++... + .-..+-.+|++.|++.+. .+++
T Consensus 373 ~~kr~~-mg~ia~~~ad~vivt~dnpR~ed-----p--~~i~~~i~~g~~~~~~~--~~~~dr~~AI~~ai~~a~-~~D~ 441 (475)
T COG0769 373 KSKRPD-MGAIAEQLADIVIVTSDNPRSED-----P--AVILADILAGIEAPEKY--EIIEDREEAIRKALDLAK-EGDV 441 (475)
T ss_pred cccccc-hHHHHHhcCCcEEEcCCCCCCcC-----H--HHHHHHHHhccCCccce--ecchhHHHHHHHHHHhhc-cCCE
Confidence 222333 44555555578888877632110 0 001111122332210 1 123356788888888765 6776
Q ss_pred EEEEEEecCCCCC
Q 018037 285 ILEMDTYRYHGHS 297 (362)
Q Consensus 285 lIe~~tyR~~GHs 297 (362)
++.. .+||.
T Consensus 442 vlia----gkGhe 450 (475)
T COG0769 442 VLIA----GKGHE 450 (475)
T ss_pred EEEe----eccch
Confidence 6654 67775
No 306
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=20.66 E-value=4.3e+02 Score=25.10 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhC-CCC-eE--EEEEcC-Cc--ccccccc-cccCCchHhhhc--CCcceEEEeCC-CHHHHHHHHHHHHH
Q 018037 208 QLFEALNIAALW-DLP-AI--LVCENN-HY--GMGTAEW-RAAKSPSYYKRG--DYVPGLKVDGM-DALAVKQACKFAKE 276 (362)
Q Consensus 208 ~~~Ealn~A~~~-~LP-vI--fVv~NN-~~--gi~t~~~-~~~~~~~~~~~g--~gi~g~~VdG~-D~~av~~a~~~A~~ 276 (362)
.+.|||.+|+.- ..| +| +++.|| .| |.-.... -...-+.....| .|-..+.|++. |+.++. +
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~~i-------~ 229 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEELI-------S 229 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHHHH-------H
Confidence 589999999644 366 55 333333 35 2211111 111112222233 46667888875 544433 3
Q ss_pred HhccCCCEEEEEE
Q 018037 277 HALKNGPMILEMD 289 (362)
Q Consensus 277 ~ar~~gP~lIe~~ 289 (362)
+. ++.|+||+..
T Consensus 230 yL-E~~pVLI~~~ 241 (242)
T PRK01322 230 YL-ENKPVLIVYE 241 (242)
T ss_pred HH-hcCcEEEEec
Confidence 31 2889999763
No 307
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=20.56 E-value=3.2e+02 Score=21.17 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=27.3
Q ss_pred EEeCCCHHHHHHHHHHHHHHhccCCC-EEEEEEEec
Q 018037 258 KVDGMDALAVKQACKFAKEHALKNGP-MILEMDTYR 292 (362)
Q Consensus 258 ~VdG~D~~av~~a~~~A~~~ar~~gP-~lIe~~tyR 292 (362)
++.| |..+|.+++++++.++.+.++ +++++..-+
T Consensus 42 ~l~G-~~~~Vf~~l~~~~~~a~~~~~H~v~~~T~S~ 76 (81)
T PF07615_consen 42 QLRG-DEEDVFDALEAAFERAAEEGPHVVMVVTISN 76 (81)
T ss_dssp EEEC-BHHHHHHHHHHHHHHHHCCSSSEEEEEEEEE
T ss_pred EEEC-CHHHHHHHHHHHHHHHhccCCeEEEEEEEEC
Confidence 5666 788999999999999888555 888887655
No 308
>PRK13937 phosphoheptose isomerase; Provisional
Probab=20.50 E-value=2e+02 Score=25.66 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=33.2
Q ss_pred CCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEEcC
Q 018037 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (362)
Q Consensus 189 ~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~NN 230 (362)
..++.++|++..-|.+.+ +.+++..|...+.|+|.|..+.
T Consensus 104 ~~~~Dl~i~iS~sG~t~~--~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 104 GRPGDVLIGISTSGNSPN--VLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred CCCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEeCCC
Confidence 356788888888887764 8899999999999999888754
No 309
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.13 E-value=5.1e+02 Score=26.10 Aligned_cols=130 Identities=12% Similarity=-0.019 Sum_probs=64.4
Q ss_pred cCCcccc--chhHHHHHHHHHHhhCCCCCeEEEEeCCcc-cccch---HHHHHHHHHhCCCCeEEEEEcCCcc-cccccc
Q 018037 167 GGHGIVG--AQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQ---LFEALNIAALWDLPAILVCENNHYG-MGTAEW 239 (362)
Q Consensus 167 ~~~g~lG--~~~p~A~G~A~A~k~~~~~~vvv~~~GDGa-~~~G~---~~Ealn~A~~~~LPvIfVv~NN~~g-i~t~~~ 239 (362)
+++|.+. .+.+.++|.-+..+.++.. .-+++-+.- ..||. .+| ....++|+.+|++|--.. |...
T Consensus 174 cnsg~Lat~~g~gtal~~i~~a~~~gk~--f~V~v~EsRP~~qG~rlta~e----L~~~GIpvtlI~Dsa~~~~m~~~-- 245 (363)
T PRK05772 174 CNAGGLATGTGLGTALAPVKLAKALGMS--VSVIAPETRPWLQGSRLTVYE----LMEEGIKVTLITDTAVGLVMYKD-- 245 (363)
T ss_pred cCCcchhhccccccHHHHHHHHHHCCCe--EEEEECCCCccchhHHHHHHH----HHHCCCCEEEEehhHHHHHHhhc--
Confidence 3444442 3345556654444333333 333344555 56774 233 336799999887764322 2110
Q ss_pred cccCCchHhhhcCCcceEEEeCC---CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCC-CCCCCChhhHHhH
Q 018037 240 RAAKSPSYYKRGDYVPGLKVDGM---DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDP-GSTYRTRDEISGV 314 (362)
Q Consensus 240 ~~~~~~~~~~~g~gi~g~~VdG~---D~~av~~a~~~A~~~ar~~gP~lIe~~tyR~~GHs~~D~-~~~YR~~~e~~~~ 314 (362)
. -|.. -.|...+..||. .+-. +...--|..+ +.|+++-+-+|.+.-....|+ +.-.|+++|+..+
T Consensus 246 ~----Vd~V--ivGAD~I~~NG~v~NKiGT-y~lA~~Ak~~---~vPfyV~ap~~k~d~~~~~~~i~ieer~p~ev~~~ 314 (363)
T PRK05772 246 M----VNNV--MVGADRILRDGHVFNKIGT-FKEAVIAHEL---GIPFYALAPTSTFDLKSDVNDVKIEERDPNEVRTI 314 (363)
T ss_pred C----CCEE--EECccEEecCCCEeehhhh-HHHHHHHHHh---CCCEEEEccccccCccccccccccccCCHHHhccc
Confidence 0 0100 134555556662 2211 2222223333 899999888887665443332 2335777777543
No 310
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=20.07 E-value=1.7e+02 Score=19.12 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 018037 319 DPIERIRKLILAHDLATEKELKDIEKEVRKEVDD 352 (362)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~el~~i~~e~~~~v~~ 352 (362)
||+..|=+.+-...++|.+|-.++-.++++-.+.
T Consensus 2 D~l~~Yl~ei~~~~LLt~eeE~~LA~~i~~g~~~ 35 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTAEEEIELARRIRKGDEA 35 (37)
T ss_dssp HHHHHHHHHHHHS-EETTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHh
Confidence 7888888888888899999988888888776544
No 311
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=20.00 E-value=4.4e+02 Score=22.56 Aligned_cols=46 Identities=9% Similarity=0.124 Sum_probs=35.0
Q ss_pred HHHHhhCCCCCeEEEEeCCcccccchHHHHHHHHHhCCCCeEEEEE
Q 018037 183 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE 228 (362)
Q Consensus 183 A~A~k~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvIfVv~ 228 (362)
++....+.+....|.+-+|+....|.+.+.|+.....+..-|-++.
T Consensus 87 ~l~~~~~~~~~~~v~i~aD~~v~y~~vv~vm~~l~~aG~~~v~L~t 132 (137)
T COG0848 87 ALAALAKGKKNPRVVIRADKNVKYGTVVKVMDLLKEAGFKKVGLVT 132 (137)
T ss_pred HHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEEe
Confidence 4444333344458999999999999999999999999998665443
Done!