Query 018039
Match_columns 362
No_of_seqs 177 out of 730
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0674 Calreticulin [Posttran 100.0 3E-127 6E-132 922.9 26.0 355 1-358 1-361 (406)
2 PF00262 Calreticulin: Calreti 100.0 2E-123 4E-128 920.1 17.5 312 19-331 1-367 (367)
3 KOG0675 Calnexin [Posttranslat 100.0 3E-113 6E-118 863.1 24.4 333 21-355 43-439 (558)
4 PF00262 Calreticulin: Calreti 99.9 2.4E-25 5.2E-30 221.5 1.8 100 191-290 225-340 (367)
5 KOG0674 Calreticulin [Posttran 99.9 1.3E-21 2.7E-26 190.5 8.7 222 45-298 72-314 (406)
6 KOG0675 Calnexin [Posttranslat 99.8 8.8E-22 1.9E-26 200.4 7.9 108 190-298 270-394 (558)
7 PF06439 DUF1080: Domain of Un 69.0 41 0.00088 29.4 9.0 140 23-192 4-153 (185)
8 PF07210 DUF1416: Protein of u 45.6 24 0.00052 29.3 3.1 29 85-114 4-32 (85)
9 PF02973 Sialidase: Sialidase, 39.8 1.4E+02 0.003 28.2 7.6 106 70-192 17-131 (190)
10 PF15240 Pro-rich: Proline-ric 37.9 17 0.00037 34.0 1.3 17 2-18 1-17 (179)
11 PF10262 Rdx: Rdx family; Int 34.5 44 0.00095 26.2 3.0 23 170-192 35-57 (76)
12 PF07691 PA14: PA14 domain; I 27.4 55 0.0012 27.4 2.6 28 166-193 58-85 (145)
13 PF11025 GP40: Glycoprotein GP 27.0 2E+02 0.0043 26.3 6.1 70 101-191 6-75 (165)
14 PLN03148 Blue copper-like prot 21.7 1.6E+02 0.0036 27.2 4.7 52 95-147 66-118 (167)
No 1
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-127 Score=922.90 Aligned_cols=355 Identities=52% Similarity=1.029 Sum_probs=339.9
Q ss_pred ChhH--HHHHHHhhhccceeeeeeccCC--CccCCCeEecccccCCCCCCcEEEeccccCCCCC-Ccceeeccccceeee
Q 018039 1 MMLK--LLVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75 (362)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~~~F~E~F~--~~~~~rWv~S~~~k~~~~~G~w~~~~g~~~g~~~-d~GL~~~~~a~~yaI 75 (362)
||.+ ++.+|++++++++.|||.|.|. ++|+.|||+|++++. ..|+|.+++|+|+|++. |+||+|++++|||||
T Consensus 1 ~~~~~~~~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~ 78 (406)
T KOG0674|consen 1 MLPSFWVLCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI 78 (406)
T ss_pred CchhHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeee
Confidence 4544 3334446677788999999995 449999999998753 57999999999999986 999999999999999
Q ss_pred cccCCCcCCCCCceEEEEEEeeeceeeecCceEEecccccccccccCCCCeeEEEcccccCCCCceEEEEEeecCCcccc
Q 018039 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPI 155 (362)
Q Consensus 76 s~~l~~~~~~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~ 155 (362)
|++|+.|+|++|+|||||+||++|.|+|||||||||++.+|+.+|+++|||.||||||+||++|+|||+|++|+++||++
T Consensus 79 sa~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhli 158 (406)
T KOG0674|consen 79 SAKFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLI 158 (406)
T ss_pred ecccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCcCceeEEEECCCCcEEEEEcCeEeccCCCccCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 018039 156 KKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235 (362)
Q Consensus 156 ~~~~~~~~d~~tHlYTLil~pdntyei~ID~~~~~~gsl~~Dwd~~~p~~I~DP~d~KP~DWdd~~~I~Dp~a~KP~dWd 235 (362)
++.++|++|++|||||||||||+||+|+|||+.+.+|||.+||+++||+.|.||.++||+|||++++|+||+++||++|+
T Consensus 159 kK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe 238 (406)
T KOG0674|consen 159 KKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE 238 (406)
T ss_pred ccccccccCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCccCcccCCCCCCcccccccCCCCCCCCCCcccccCceeEEE
Q 018039 236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGI 315 (362)
Q Consensus 236 d~p~~I~dP~~~kP~dwd~~~~G~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~p~~I~NP~y~~d~~~~~~~~i~~iG~ 315 (362)
.|++||||+++||+|||+++||+|+||||+||.|+|+|+|++|.||+|||.|.+|+|.||+|..++.+|.+.+|++|||
T Consensus 239 -~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgl 317 (406)
T KOG0674|consen 239 -KPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGL 317 (406)
T ss_pred -cccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeee
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEEeecCceeeeEEecCCHHHHHHHHHHhccc-cccccccccc
Q 018039 316 EVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REVCSSSFVF 358 (362)
Q Consensus 316 elW~~~~g~~FDNi~i~~d~~~A~~~~~~t~~~-~~~E~~~~~~ 358 (362)
|||||+||+||||||||+|+++|++++++||+. +.+|+++++.
T Consensus 318 dLWQVKSgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~ 361 (406)
T KOG0674|consen 318 DLWQVKSGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDK 361 (406)
T ss_pred eEEEeecceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhh
Confidence 999999999999999999999999999999998 9999988753
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=1.8e-123 Score=920.06 Aligned_cols=312 Identities=53% Similarity=1.022 Sum_probs=235.8
Q ss_pred eeeeccCCCc--cCCCeEecccccCC---CCCCcEEEeccccC-CCCCCcceeeccccceeeecccCCC-cCCCCCceEE
Q 018039 19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWH-GDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVV 91 (362)
Q Consensus 19 ~~F~E~F~~~--~~~rWv~S~~~k~~---~~~G~w~~~~g~~~-g~~~d~GL~~~~~a~~yaIs~~l~~-~~~~~k~LVv 91 (362)
|||+|+|+++ |.+|||+|++++++ .|.|+|++++|+++ +.++|+||||+++|||||||++|++ |++++|+|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 7999999986 99999999999874 68999999999665 5568999999999999999999998 9999999999
Q ss_pred EEEEeeeceeeecCceEEecccccccc-cccCCCCeeEEEcccccCCCCceEEEEEeecCC-------ccccccCCcccc
Q 018039 92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQ-------NYPIKKELECET 163 (362)
Q Consensus 92 QYeVk~q~~i~CGGaYiKLl~~~~d~~-~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~-------~~~~~~~~~~~~ 163 (362)
|||||||++|+|||||||||+++.++. +|+++|||+||||||+|| .+++|||||||++. +|..+++..+.+
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~ 159 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT 159 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence 999999999999999999999998887 999999999999999999 67779999998752 244455667889
Q ss_pred cCcCceeEEEECCCCcEEEEEcCeEeccCCCccCCC--CCCCccccCCCCCCCCCCCCCccccCCCCCCCCCCC------
Q 018039 164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------ 235 (362)
Q Consensus 164 d~~tHlYTLil~pdntyei~ID~~~~~~gsl~~Dwd--~~~p~~I~DP~d~KP~DWdd~~~I~Dp~a~KP~dWd------ 235 (362)
|++||||||||+|||||||+|||+++.+|||.+||+ ++||++|+||+|+||+||||+++|+||+|+||+|||
T Consensus 160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~ 239 (367)
T PF00262_consen 160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF 239 (367)
T ss_dssp SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCccCccCcccCCC
Q 018039 236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN 283 (362)
Q Consensus 236 --------------d~p~~I~dP~~~kP~dwd~~~~G~W~~p~I~NP------------------~ykG~W~p~~I~NP~ 283 (362)
++|++|+||+|+||+|||++++|+|+||||+|| +|||+|+||||+||+
T Consensus 240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~ 319 (367)
T PF00262_consen 240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN 319 (367)
T ss_dssp EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence 679999999999999999999999999999999 999999999999999
Q ss_pred CCCcccccccCCCCCCCCCCcccccCceeEEEEeEEeecCceeeeEEe
Q 018039 284 YKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILI 331 (362)
Q Consensus 284 YkG~W~p~~I~NP~y~~d~~~~~~~~i~~iG~elW~~~~g~~FDNi~i 331 (362)
|+|+|+||+|+||+|++|.+++.+.+|++||||||||++|++||||||
T Consensus 320 YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 320 YKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp ---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred ccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 999999999999999999999999999999999999999999999998
No 3
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-113 Score=863.14 Aligned_cols=333 Identities=40% Similarity=0.774 Sum_probs=307.7
Q ss_pred eeccCCCc--cCCCeEecccccCC------CCCCcEEEeccccCCCCCCcceeeccccceeeecccCCC-cCCCCCceEE
Q 018039 21 FEERFDDG--WRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVV 91 (362)
Q Consensus 21 F~E~F~~~--~~~rWv~S~~~k~~------~~~G~w~~~~g~~~g~~~d~GL~~~~~a~~yaIs~~l~~-~~~~~k~LVv 91 (362)
|.|+|+.+ +. |||.|.+||++ .|.|+|.+++++-.+.++|+|||+++.|||||||+.|++ |+++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 67778875 45 89999998873 378999999998778889999999999999999999998 9999999999
Q ss_pred EEEEeeeceeeecCceEEecccc---cccccccCCCCeeEEEcccccCCCCceEEEEEeecCC------ccccccCCc--
Q 018039 92 QYSIRFEQDIECGGGYIKLLSAY---VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQ------NYPIKKELE-- 160 (362)
Q Consensus 92 QYeVk~q~~i~CGGaYiKLl~~~---~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~------~~~~~~~~~-- 160 (362)
|||||+|+|++|||||||||++. ..+++|+++|||+||||||+|| .+++|||||||++. +++.+.++.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l 200 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSL 200 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccC-CcccEEEEEeeccCCCCeeehhhccCCCccc
Confidence 99999999999999999999983 5889999999999999999999 99999999999862 456666664
Q ss_pred --ccccCcCceeEEEECCCCcEEEEEcCeEeccCCCccCCC--CCCCccccCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 018039 161 --CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS 236 (362)
Q Consensus 161 --~~~d~~tHlYTLil~pdntyei~ID~~~~~~gsl~~Dwd--~~~p~~I~DP~d~KP~DWdd~~~I~Dp~a~KP~dWdd 236 (362)
..+|++||||||||+|||||+|||||++|+.|||++||. .+||++|+||+|.||+|||+|+.||||+|+||+|||+
T Consensus 201 ~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE 280 (558)
T KOG0675|consen 201 KKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDE 280 (558)
T ss_pred ccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCc
Confidence 678999999999999999999999999999999999995 8999999999999999999999999999999999984
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCccCccC
Q 018039 237 --------------------IPKEIPDPKAKKPDNWDEDEDGLWKP-------------------PKIPNPAYKGPWRPK 277 (362)
Q Consensus 237 --------------------~p~~I~dP~~~kP~dwd~~~~G~W~~-------------------p~I~NP~ykG~W~p~ 277 (362)
+|.+|+||+|+||+|||++++|+|++ |||.||+|||+|.+|
T Consensus 281 ~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~p 360 (558)
T KOG0675|consen 281 DAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILP 360 (558)
T ss_pred CCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccc
Confidence 68999999999999999998776554 566788999999999
Q ss_pred cccCCCCCCcccccccCCCCCCCCCCcccccCceeEEEEeEEeecCceeeeEEecCCHHHHHHHHHHhccc-ccccccc
Q 018039 278 RIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REVCSSS 355 (362)
Q Consensus 278 ~I~NP~YkG~W~p~~I~NP~y~~d~~~~~~~~i~~iG~elW~~~~g~~FDNi~i~~d~~~A~~~~~~t~~~-~~~E~~~ 355 (362)
||+||+|+|.|+||+|+||+||++.+|+.+.+|.+||||||+|+++++|||||||+|++.|+.+++.||.. ..+|++.
T Consensus 361 mI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~ 439 (558)
T KOG0675|consen 361 MIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK 439 (558)
T ss_pred cccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 6666653
No 4
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.90 E-value=2.4e-25 Score=221.48 Aligned_cols=100 Identities=44% Similarity=0.887 Sum_probs=46.0
Q ss_pred cCCCccCCCCCCCccccCCCCCCCCCCCC--CccccCCCCCCCCCCCC------CCCCCCCCCCCCCC--CC------CC
Q 018039 191 SGSMYTDWDILPPRKIKAVNAKKPADWDD--REYIDDPNAVKPEGYDS------IPKEIPDPKAKKPD--NW------DE 254 (362)
Q Consensus 191 ~gsl~~Dwd~~~p~~I~DP~d~KP~DWdd--~~~I~Dp~a~KP~dWdd------~p~~I~dP~~~kP~--dw------d~ 254 (362)
+..+++|||+..|++|+||++.||++|++ +++|+||+|+||+|||+ ++++|+||.|..+. .| |.
T Consensus 225 ~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np 304 (367)
T PF00262_consen 225 NAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNP 304 (367)
T ss_dssp STT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-T
T ss_pred cccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCc
Confidence 34455666655566666666666666665 57999999999999997 58999999888742 24 67
Q ss_pred CCCCCCCCCCCCCCCCCccCccCcccCCCCCCcccc
Q 018039 255 DEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKI 290 (362)
Q Consensus 255 ~~~G~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~p 290 (362)
++.|+|+||||+||+|+|+|+||+|+||+|..+=.|
T Consensus 305 ~YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p 340 (367)
T PF00262_consen 305 NYKGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDPNP 340 (367)
T ss_dssp T--SS----EEE-TT---S----EEE-TT--SSTTT
T ss_pred cccCCccccccCCccccccccccccCCCcccCCCCc
Confidence 999999999999999999999999999999988443
No 5
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-21 Score=190.52 Aligned_cols=222 Identities=28% Similarity=0.464 Sum_probs=140.0
Q ss_pred CCcEEEeccccCCCCC-Ccceeeccc---------cceee--ecccCCCcCCCCCceEEEEEEeeeceeeecCceEEecc
Q 018039 45 AGYFKHTAGKWHGDPD-DKGIQTHTD---------ARHYA--ISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLS 112 (362)
Q Consensus 45 ~G~w~~~~g~~~g~~~-d~GL~~~~~---------a~~ya--Is~~l~~~~~~~k~LVvQYeVk~q~~i~CGGaYiKLl~ 112 (362)
.++|-.-+++|..+.+ ++-||.-=. +..|. .++.++.+++.++ -+|.+-|--. -||=|==|+--
T Consensus 72 d~rfya~sa~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ge---s~y~iMfGPD-ICG~~tkKVhv 147 (406)
T KOG0674|consen 72 DARFYAISAKFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGE---SPYNIMFGPD-ICGFGTKKVHV 147 (406)
T ss_pred cceeeeeecccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCC---cccccccCCc-ccCCCCceEEE
Confidence 3455555566666554 777775211 12233 4555565455454 4777766433 37754332211
Q ss_pred cccccccccCCCCeeEEEcccccCC--CCceEEEEEeecCCccccccC-CcccccCcCceeEEEECCCCcEEEEEcCeEe
Q 018039 113 AYVNQKKFGGDAPYSLMFGPDICGT--QKKHLHVILSYQGQNYPIKKE-LECETDKLTHFYTFILRPDASYSILIDNRER 189 (362)
Q Consensus 113 ~~~d~~~f~~~tpY~IMFGPD~CG~--~~~kvHfI~~~~~~~~~~~~~-~~~~~d~~tHlYTLil~pdntyei~ID~~~~ 189 (362)
- .+|.++ +.+.=-==.|-. .|+-..||+|-.+ .|+++.. ....+..+..-+.|.-.. .| ..
T Consensus 148 i----l~ykg~--nhlikK~i~Ck~D~~tHlYTlIlRPd~-TYeVkIDn~~~esGsle~DWdll~~K------Ki---kd 211 (406)
T KOG0674|consen 148 I----LNYKGK--NHLIKKDIRCKDDELTHLYTLILRPDA-TYEVKIDNQQVESGSLEDDWDLLPPK------KI---KD 211 (406)
T ss_pred E----Eecccc--cchhccccccccCCcceeEEEEecCCC-eeEEEEcccccccCcccccccccccc------cc---CC
Confidence 0 112111 111111123532 2555666776543 3444433 233455555555554322 01 13
Q ss_pred ccCCCccCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018039 190 DSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS------IPKEIPDPKAKKPDNWDEDEDGLWKPP 263 (362)
Q Consensus 190 ~~gsl~~Dwd~~~p~~I~DP~d~KP~DWdd~~~I~Dp~a~KP~dWdd------~p~~I~dP~~~kP~dwd~~~~G~W~~p 263 (362)
.++++|+|||. ...|+||+|+||+||+-+++||||+|+||+|||+ +++||++|.++ |+|+|.
T Consensus 212 P~a~KPedWDe--r~~I~DpeD~Kp~dwe~pehipDpdakKpedWddemDGEWe~P~i~nPey~----------gewkPk 279 (406)
T KOG0674|consen 212 PDAKKPEDWDE--REYIPDPEDKKPQDWEKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYK----------GEWKPK 279 (406)
T ss_pred ccccCcccchh--hccCCCccccCccccccccccCCcccCCcccccccccCCcCCCCCCCcccc----------CccCcc
Confidence 45779999997 7899999999999999999999999999999997 58999999887 999999
Q ss_pred CCCCCCCCccCccCcccCCCCCCcccccccCCCCC
Q 018039 264 KIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEF 298 (362)
Q Consensus 264 ~I~NP~ykG~W~p~~I~NP~YkG~W~p~~I~NP~y 298 (362)
.|.||+|||.|.+|+|.||.|...-.--...|-.+
T Consensus 280 qi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~ 314 (406)
T KOG0674|consen 280 QIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGV 314 (406)
T ss_pred cccCccccceeeccccCCCcCCCCcceeeecccce
Confidence 99999999999999999999987643333334333
No 6
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.8e-22 Score=200.43 Aligned_cols=108 Identities=37% Similarity=0.621 Sum_probs=94.1
Q ss_pred ccCCCccCCCCCCCccccCCCCCCCCCCCCC--ccccCCCCCCCCCCCC------CCCCCCCCCCCC---------CCCC
Q 018039 190 DSGSMYTDWDILPPRKIKAVNAKKPADWDDR--EYIDDPNAVKPEGYDS------IPKEIPDPKAKK---------PDNW 252 (362)
Q Consensus 190 ~~gsl~~Dwd~~~p~~I~DP~d~KP~DWdd~--~~I~Dp~a~KP~dWdd------~p~~I~dP~~~k---------P~dw 252 (362)
.+..+++|||...|.+|+|+++.||++|.+. ++|+||+|+||+|||+ ++++|.||.|++ |..-
T Consensus 270 pnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~ 349 (558)
T KOG0675|consen 270 PNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMIN 349 (558)
T ss_pred cccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccC
Confidence 3567899999999999999999999999985 5999999999999997 689999999973 4455
Q ss_pred CCCCCCCCCCCCCCCCCCCccCccCcccCCCCCCcccccccCCCCC
Q 018039 253 DEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEF 298 (362)
Q Consensus 253 d~~~~G~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~p~~I~NP~y 298 (362)
|..++|.|.+|||.||+|+|+|+||.|+||+|...=+|- +-+|=|
T Consensus 350 NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~-~~~pIs 394 (558)
T KOG0675|consen 350 NPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPF-TLTPIS 394 (558)
T ss_pred CCccCCCCccccccCccccCccccccCCCcccccccCcc-cccchh
Confidence 889999999999999999999999999999999886553 445543
No 7
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=69.04 E-value=41 Score=29.38 Aligned_cols=140 Identities=10% Similarity=0.070 Sum_probs=66.5
Q ss_pred ccCCCccCCCeEecccccCCCCCCcEEEeccccC---CCCCCcceeeccccceeeecccCCCcCCCCCceEEEEEEeeec
Q 018039 23 ERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWH---GDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQ 99 (362)
Q Consensus 23 E~F~~~~~~rWv~S~~~k~~~~~G~w~~~~g~~~---g~~~d~GL~~~~~a~~yaIs~~l~~~~~~~k~LVvQYeVk~q~ 99 (362)
.=|+....+.|...... ...+.|.+..|... ......|++++ . + .=++++|+.++|+..
T Consensus 4 ~lf~g~~l~gW~~~~~~---~~~~~~~v~dG~l~~~~~~~~~~~~l~~---------~---~---~~~df~l~~d~k~~~ 65 (185)
T PF06439_consen 4 SLFNGKDLDGWKIYGGG---WFEGGWSVKDGVLVSNGSSGSGGGYLYT---------D---K---KFSDFELEVDFKITP 65 (185)
T ss_dssp ESS-SSCGTTEEETTSS---SETTTEEEETTEEE-GGGGESSS--EEE---------S---S---EBSSEEEEEEEEE-T
T ss_pred EeECCCCHHHCeeCCCC---ccccCcEeeCCEEEecccCCCCcceEEE---------C---C---ccccEEEEEEEEECC
Confidence 34665566889888532 22577888887654 11112232222 1 1 125689999999833
Q ss_pred eeeecCceEEecccccccccccCCCCeeEEEcccccCCCCceEEEEEeec-CCccc-----cc-cCCcccccCcCceeEE
Q 018039 100 DIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQ-GQNYP-----IK-KELECETDKLTHFYTF 172 (362)
Q Consensus 100 ~i~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~-~~~~~-----~~-~~~~~~~d~~tHlYTL 172 (362)
+- .+|-|+..-+ .........-|++-..++.++ . ...+. +..+. .. ..........-|=+++
T Consensus 66 ~~-~sGi~~r~~~---~~~~~~~~~gy~~~i~~~~~~-~------~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I 134 (185)
T PF06439_consen 66 GG-NSGIFFRAQS---PGDGQDWNNGYEFQIDNSGGG-T------GLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRI 134 (185)
T ss_dssp T--EEEEEEEESS---ECCSSGGGTSEEEEEE-TTTC-S------TTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEE
T ss_pred CC-CeEEEEEecc---ccCCCCcceEEEEEEECCCCc-c------CCCCccceEEEeccccccccccccCCCCceEEEEE
Confidence 22 3344443331 111112223477777777765 0 00011 11110 01 1111222334455555
Q ss_pred EECCCCcEEEEEcCeEeccC
Q 018039 173 ILRPDASYSILIDNRERDSG 192 (362)
Q Consensus 173 il~pdntyei~ID~~~~~~g 192 (362)
+++ .+++.+.|||+.|.+-
T Consensus 135 ~~~-g~~i~v~vnG~~v~~~ 153 (185)
T PF06439_consen 135 VVK-GNRITVWVNGKPVADF 153 (185)
T ss_dssp EEE-TTEEEEEETTEEEEEE
T ss_pred EEE-CCEEEEEECCEEEEEE
Confidence 665 7889999999988654
No 8
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=45.64 E-value=24 Score=29.34 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=25.2
Q ss_pred CCCceEEEEEEeeeceeeecCceEEecccc
Q 018039 85 KNRTLVVQYSIRFEQDIECGGGYIKLLSAY 114 (362)
Q Consensus 85 ~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~ 114 (362)
-.|..|||=.|+ ..+--.||||+.||..+
T Consensus 4 ~~ke~VItG~V~-~~G~Pv~gAyVRLLD~s 32 (85)
T PF07210_consen 4 VEKETVITGRVT-RDGEPVGGAYVRLLDSS 32 (85)
T ss_pred ccceEEEEEEEe-cCCcCCCCeEEEEEcCC
Confidence 357899999999 78888999999999874
No 9
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=39.83 E-value=1.4e+02 Score=28.18 Aligned_cols=106 Identities=14% Similarity=0.241 Sum_probs=64.7
Q ss_pred cceeeecccCCC-cCCCCCceEEEEEEeeeceeeecCceEEecccccccccccCCCCeeEEE-cccccCCCCceEEEEEe
Q 018039 70 ARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMF-GPDICGTQKKHLHVILS 147 (362)
Q Consensus 70 a~~yaIs~~l~~-~~~~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~~d~~~f~~~tpY~IMF-GPD~CG~~~~kvHfI~~ 147 (362)
...+-||..+++ -....-+++|-|..--..++-| ||+-+.+... .-|--|+ -+.+|| +-+|
T Consensus 17 ~~~~dls~~l~~lk~L~~gTI~i~Fk~~~~~~~~s------LfsiSn~~~~----n~YF~lyv~~~~~G-------~E~R 79 (190)
T PF02973_consen 17 GQRVDLSEDLSKLKKLEEGTIVIRFKSDSNSGIQS------LFSISNSTKG----NEYFSLYVSNNKLG-------FELR 79 (190)
T ss_dssp CCCEE-CCSCCHCCT-SSEEEEEEEEESS-SSEEE------EEEEE-TSTT----SEEEEEEEETTEEE-------EEEE
T ss_pred CCcccccchhHHHhcccccEEEEEEecCCCcceeE------EEEecCCCCc----cceEEEEEECCEEE-------EEEe
Confidence 344777888876 4455678999998755555554 7765432211 1465555 333666 6677
Q ss_pred ecC--CccccccCC----cccccCcCceeEEEEC-CCCcEEEEEcCeEeccC
Q 018039 148 YQG--QNYPIKKEL----ECETDKLTHFYTFILR-PDASYSILIDNRERDSG 192 (362)
Q Consensus 148 ~~~--~~~~~~~~~----~~~~d~~tHlYTLil~-pdntyei~ID~~~~~~g 192 (362)
-.. .+|..-.+. ....+...|.-++... ++..|.+++||+.+..-
T Consensus 80 ~~~~~~~y~~~~~~~v~~~~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~ 131 (190)
T PF02973_consen 80 DTKGNQNYNFSRPAKVRGGYKNNVTFNTVAFVADSKNKGYKLYVNGELVSTL 131 (190)
T ss_dssp ETTTTCEEEEEESSE--SEETTEES-EEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred cCCCCcccccccccEecccccCCceEEEEEEEEecCCCeEEEEeCCeeEEEe
Confidence 643 234433343 2345667888888887 89999999999777644
No 10
>PF15240 Pro-rich: Proline-rich
Probab=37.89 E-value=17 Score=33.97 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=10.4
Q ss_pred hhHHHHHHHhhhcccee
Q 018039 2 MLKLLVLFLFFQISVSE 18 (362)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (362)
||+|||.++||++++|.
T Consensus 1 MLlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQ 17 (179)
T ss_pred ChhHHHHHHHHHhhhcc
Confidence 45466656777776653
No 11
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=34.55 E-value=44 Score=26.18 Aligned_cols=23 Identities=4% Similarity=0.036 Sum_probs=17.8
Q ss_pred eEEEECCCCcEEEEEcCeEeccC
Q 018039 170 YTFILRPDASYSILIDNRERDSG 192 (362)
Q Consensus 170 YTLil~pdntyei~ID~~~~~~g 192 (362)
.+|.....+.|||.+||+.|.+.
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~SK 57 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFSK 57 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEEH
T ss_pred EEEEeccCCEEEEEEccEEEEEe
Confidence 45666779999999999998853
No 12
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=27.41 E-value=55 Score=27.35 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=23.5
Q ss_pred cCceeEEEECCCCcEEEEEcCeEeccCC
Q 018039 166 LTHFYTFILRPDASYSILIDNRERDSGS 193 (362)
Q Consensus 166 ~tHlYTLil~pdntyei~ID~~~~~~gs 193 (362)
.+-.||+.+..|+.+++.|||+.+....
T Consensus 58 ~~G~y~f~~~~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 58 ETGTYTFSLTSDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSEEEEEEEEESSEEEEEETTEEEEECS
T ss_pred cCceEEEEEEecccEEEEECCEEEEcCC
Confidence 4567999999999999999999886543
No 13
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=27.04 E-value=2e+02 Score=26.31 Aligned_cols=70 Identities=16% Similarity=0.345 Sum_probs=40.3
Q ss_pred eeecCceEEecccccccccccCCCCeeEEEcccccCCCCceEEEEEeecCCccccccCCcccccCcCceeEEEECCCCcE
Q 018039 101 IECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASY 180 (362)
Q Consensus 101 i~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~~~~~~~~~d~~tHlYTLil~pdnty 180 (362)
-+||-.|+--|.+..-...+.- --|+|...|.+-. -...+++.....+.+ |+ -+.++|.
T Consensus 6 eeCgtsFvmWf~~GtpvaTlkc-g~YTiVyAP~k~~------------------t~PaPrYISGev~~V-tF-eksd~Tv 64 (165)
T PF11025_consen 6 EECGTSFVMWFGEGTPVATLKC-GDYTIVYAPEKDQ------------------TDPAPRYISGEVKSV-TF-EKSDSTV 64 (165)
T ss_pred hhcceeEEEEecCCcceEEEec-CCEEEEEccccCC------------------CCCCCceeecceEEE-EE-eccCCeE
Confidence 4799999988877532222221 1266666666531 112234444433322 22 2368999
Q ss_pred EEEEcCeEecc
Q 018039 181 SILIDNRERDS 191 (362)
Q Consensus 181 ei~ID~~~~~~ 191 (362)
.|.|||+....
T Consensus 65 kIkvd~kefst 75 (165)
T PF11025_consen 65 KIKVDGKEFST 75 (165)
T ss_pred EEEECCeEccc
Confidence 99999998754
No 14
>PLN03148 Blue copper-like protein; Provisional
Probab=21.72 E-value=1.6e+02 Score=27.17 Aligned_cols=52 Identities=10% Similarity=0.151 Sum_probs=32.1
Q ss_pred EeeeceeeecC-ceEEecccccccccccCCCCeeEEEcccccCCCCceEEEEEe
Q 018039 95 IRFEQDIECGG-GYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILS 147 (362)
Q Consensus 95 Vk~q~~i~CGG-aYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~ 147 (362)
|.-+..-.|.- .-|.-++...+.-.++..-+|...-|+..|. .--|+++.+.
T Consensus 66 V~~~~Y~~C~~~~pi~~~tsG~d~v~L~~~G~~YFIcg~ghC~-~GmKl~I~V~ 118 (167)
T PLN03148 66 VNQTGYDNCTTEGAAGNWTSGKDFIPLNKAKRYYFICGNGQCF-NGMKVTILVH 118 (167)
T ss_pred EChHHcCcccCCCCcceecCCCcEEEecCCccEEEEcCCCccc-cCCEEEEEEc
Confidence 45556677873 4455555444444455444677667999997 5577777663
Done!