Query 018040
Match_columns 362
No_of_seqs 519 out of 2662
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 3.5E-77 7.7E-82 643.2 38.9 353 2-354 1025-1377(1381)
2 KOG0058 Peptide exporter, ABC 100.0 3.6E-72 7.8E-77 565.2 35.4 312 42-357 396-709 (716)
3 PLN03130 ABC transporter C fam 100.0 1.5E-70 3.2E-75 616.3 44.3 350 3-353 1121-1475(1622)
4 COG2274 SunT ABC-type bacterio 100.0 9.3E-71 2E-75 571.8 38.3 340 8-351 366-707 (709)
5 TIGR00957 MRP_assoc_pro multi 100.0 2.2E-70 4.8E-75 614.7 43.5 348 2-351 1172-1519(1522)
6 PLN03232 ABC transporter C fam 100.0 1.5E-69 3.3E-74 607.1 43.5 351 3-354 1118-1473(1495)
7 PTZ00243 ABC transporter; Prov 100.0 6E-68 1.3E-72 594.3 43.0 351 3-353 1166-1547(1560)
8 COG1132 MdlB ABC-type multidru 100.0 1.2E-67 2.7E-72 545.0 40.6 304 43-353 261-565 (567)
9 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.7E-67 1.2E-71 550.9 43.3 300 44-351 385-684 (686)
10 PRK11174 cysteine/glutathione 100.0 4.2E-67 9E-72 543.2 41.4 289 59-353 296-585 (588)
11 TIGR01271 CFTR_protein cystic 100.0 4.4E-67 9.6E-72 586.6 43.3 348 3-354 1093-1454(1490)
12 PRK11176 lipid transporter ATP 100.0 3.3E-66 7.1E-71 535.9 41.0 304 43-352 274-579 (582)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.6E-66 7.8E-71 546.9 40.5 304 43-349 402-709 (710)
14 PRK10790 putative multidrug tr 100.0 1.3E-65 2.8E-70 532.5 42.7 305 43-355 274-578 (592)
15 TIGR03375 type_I_sec_LssB type 100.0 2.5E-65 5.4E-70 539.1 41.0 295 43-340 394-689 (694)
16 TIGR01193 bacteriocin_ABC ABC- 100.0 2E-65 4.3E-70 541.0 40.0 302 43-350 404-707 (708)
17 COG4988 CydD ABC-type transpor 100.0 2.7E-65 6E-70 506.5 38.2 327 23-354 228-557 (559)
18 TIGR00958 3a01208 Conjugate Tr 100.0 2.8E-65 6.1E-70 539.3 39.7 299 43-348 410-710 (711)
19 KOG0055 Multidrug/pheromone ex 100.0 1.3E-65 2.8E-70 543.0 36.5 307 43-352 917-1225(1228)
20 COG4987 CydC ABC-type transpor 100.0 8.6E-66 1.9E-70 503.3 32.5 336 9-350 233-571 (573)
21 PRK11160 cysteine/glutathione 100.0 9.5E-65 2.1E-69 523.8 41.4 300 45-350 271-572 (574)
22 KOG0056 Heavy metal exporter H 100.0 1.4E-66 3.1E-71 501.0 24.8 305 45-353 470-775 (790)
23 KOG0057 Mitochondrial Fe/S clu 100.0 1.1E-64 2.3E-69 496.0 35.7 301 45-353 286-587 (591)
24 TIGR02203 MsbA_lipidA lipid A 100.0 3.6E-64 7.8E-69 519.4 40.8 305 42-352 262-568 (571)
25 PTZ00265 multidrug resistance 100.0 8E-64 1.7E-68 557.5 40.9 309 43-351 1092-1464(1466)
26 TIGR01846 type_I_sec_HlyB type 100.0 2.4E-63 5.1E-68 524.0 41.7 305 43-352 387-692 (694)
27 PRK13657 cyclic beta-1,2-gluca 100.0 3.9E-63 8.4E-68 513.5 42.5 308 42-354 264-572 (588)
28 KOG0055 Multidrug/pheromone ex 100.0 7.7E-65 1.7E-69 537.1 27.4 306 45-353 282-589 (1228)
29 TIGR02204 MsbA_rel ABC transpo 100.0 1.3E-62 2.9E-67 508.3 41.0 306 43-351 267-574 (576)
30 PRK10789 putative multidrug tr 100.0 3E-62 6.4E-67 504.9 41.7 305 43-353 246-551 (569)
31 TIGR01192 chvA glucan exporter 100.0 4.5E-61 9.9E-66 497.3 42.2 306 43-353 265-571 (585)
32 COG5265 ATM1 ABC-type transpor 100.0 2.2E-62 4.8E-67 466.5 27.7 342 4-350 152-496 (497)
33 TIGR01842 type_I_sec_PrtD type 100.0 5.7E-61 1.2E-65 493.0 40.2 291 43-339 250-542 (544)
34 TIGR02868 CydC thiol reductant 100.0 4.3E-61 9.3E-66 492.4 36.4 266 43-311 263-529 (529)
35 TIGR02857 CydD thiol reductant 100.0 3.6E-60 7.9E-65 485.6 37.7 275 44-323 254-529 (529)
36 COG1126 GlnQ ABC-type polar am 100.0 4.7E-60 1E-64 417.4 23.1 217 115-344 2-230 (240)
37 COG4618 ArpD ABC-type protease 100.0 2.1E-58 4.5E-63 448.0 28.1 291 44-340 269-561 (580)
38 PTZ00265 multidrug resistance 100.0 5E-57 1.1E-61 503.0 39.2 281 68-352 339-728 (1466)
39 PLN03232 ABC transporter C fam 100.0 2.7E-56 5.8E-61 500.4 39.1 291 44-352 548-840 (1495)
40 TIGR01194 cyc_pep_trnsptr cycl 100.0 5.2E-56 1.1E-60 457.1 37.8 280 46-332 263-552 (555)
41 cd03289 ABCC_CFTR2 The CFTR su 100.0 5.7E-57 1.2E-61 424.9 27.5 236 115-352 2-237 (275)
42 PLN03130 ABC transporter C fam 100.0 5.6E-56 1.2E-60 498.7 40.4 290 44-352 548-840 (1622)
43 COG1135 AbcC ABC-type metal io 100.0 5.5E-57 1.2E-61 416.5 22.9 221 115-346 1-238 (339)
44 COG1125 OpuBA ABC-type proline 100.0 3.5E-57 7.7E-62 407.0 20.6 221 115-346 1-232 (309)
45 KOG0054 Multidrug resistance-a 100.0 2.9E-54 6.4E-59 465.8 37.5 311 22-349 427-740 (1381)
46 COG1117 PstB ABC-type phosphat 100.0 7.6E-56 1.7E-60 389.3 19.3 221 114-343 6-241 (253)
47 PRK10522 multidrug transporter 100.0 1.5E-53 3.2E-58 438.3 37.5 262 56-332 268-531 (547)
48 COG1120 FepC ABC-type cobalami 100.0 7.3E-55 1.6E-59 400.8 22.4 213 115-340 2-229 (258)
49 PRK14257 phosphate ABC transpo 100.0 5.7E-54 1.2E-58 414.2 28.8 228 109-343 74-317 (329)
50 COG1127 Ttg2A ABC-type transpo 100.0 7.3E-54 1.6E-58 383.5 23.7 223 114-349 7-245 (263)
51 TIGR00957 MRP_assoc_pro multi 100.0 5.3E-52 1.2E-56 466.3 41.5 290 46-351 569-861 (1522)
52 cd03252 ABCC_Hemolysin The ABC 100.0 6.7E-53 1.4E-57 389.3 27.9 233 116-349 1-234 (237)
53 cd03288 ABCC_SUR2 The SUR doma 100.0 1.3E-52 2.7E-57 392.4 28.9 239 112-350 16-254 (257)
54 COG3839 MalK ABC-type sugar tr 100.0 3.3E-53 7.2E-58 403.6 23.5 216 115-345 3-229 (338)
55 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.4E-53 9.6E-58 387.2 23.2 209 115-340 4-228 (254)
56 cd03244 ABCC_MRP_domain2 Domai 100.0 2.1E-52 4.5E-57 382.0 26.1 219 115-333 2-220 (221)
57 COG3842 PotA ABC-type spermidi 100.0 2.5E-53 5.4E-58 406.5 20.5 217 114-345 4-232 (352)
58 COG1116 TauB ABC-type nitrate/ 100.0 1.4E-52 3E-57 379.5 23.5 194 115-326 3-207 (248)
59 TIGR02314 ABC_MetN D-methionin 100.0 2.1E-52 4.5E-57 404.6 25.8 219 116-345 2-236 (343)
60 COG1136 SalX ABC-type antimicr 100.0 3.3E-52 7.2E-57 376.2 24.1 204 116-329 2-221 (226)
61 cd03251 ABCC_MsbA MsbA is an e 100.0 6.5E-52 1.4E-56 381.9 26.3 225 116-340 1-226 (234)
62 COG1124 DppF ABC-type dipeptid 100.0 3.3E-52 7E-57 374.2 22.9 227 115-351 3-243 (252)
63 cd03254 ABCC_Glucan_exporter_l 100.0 1.2E-51 2.6E-56 378.9 25.9 225 115-340 2-227 (229)
64 COG3638 ABC-type phosphate/pho 100.0 4.4E-52 9.5E-57 371.1 21.3 221 115-350 3-245 (258)
65 cd03253 ABCC_ATM1_transporter 100.0 2.9E-51 6.3E-56 378.0 27.5 232 116-349 1-233 (236)
66 COG2884 FtsE Predicted ATPase 100.0 1.7E-52 3.7E-57 361.9 17.5 207 115-333 1-220 (223)
67 COG1122 CbiO ABC-type cobalt t 100.0 7.9E-52 1.7E-56 379.5 21.9 214 115-340 3-229 (235)
68 cd03245 ABCC_bacteriocin_expor 100.0 4.7E-51 1E-55 372.8 25.5 218 115-332 2-220 (220)
69 cd03261 ABC_Org_Solvent_Resist 100.0 2.5E-51 5.5E-56 378.4 23.9 212 116-340 1-227 (235)
70 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 6.2E-51 1.3E-55 376.4 26.5 225 116-340 1-227 (238)
71 PRK11650 ugpC glycerol-3-phosp 100.0 7.1E-51 1.5E-55 396.4 26.9 217 115-345 3-230 (356)
72 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.3E-50 2.9E-55 366.7 25.6 207 110-334 1-207 (207)
73 cd03260 ABC_PstB_phosphate_tra 100.0 4.8E-51 1E-55 374.6 23.0 211 116-337 1-227 (227)
74 COG1118 CysA ABC-type sulfate/ 100.0 1.7E-51 3.8E-56 379.3 18.8 216 115-345 2-233 (345)
75 TIGR01271 CFTR_protein cystic 100.0 2.1E-49 4.6E-54 444.3 39.7 280 48-349 332-645 (1490)
76 PRK11432 fbpC ferric transport 100.0 1.5E-50 3.3E-55 393.2 26.4 217 114-345 5-232 (351)
77 TIGR03265 PhnT2 putative 2-ami 100.0 1.7E-50 3.8E-55 393.3 25.9 216 115-345 4-230 (353)
78 PRK14269 phosphate ABC transpo 100.0 3.8E-50 8.3E-55 373.2 26.5 222 115-345 2-236 (246)
79 PRK14250 phosphate ABC transpo 100.0 4.3E-50 9.4E-55 371.8 26.7 223 115-349 3-231 (241)
80 PRK11153 metN DL-methionine tr 100.0 2.4E-50 5.1E-55 391.6 25.8 220 116-346 2-237 (343)
81 PRK10851 sulfate/thiosulfate t 100.0 6.6E-50 1.4E-54 389.2 26.9 216 115-345 2-232 (353)
82 PRK13537 nodulation ABC transp 100.0 2.9E-50 6.4E-55 385.3 23.9 213 114-340 6-228 (306)
83 PRK14273 phosphate ABC transpo 100.0 9.6E-50 2.1E-54 372.1 26.7 223 115-346 7-245 (254)
84 TIGR03258 PhnT 2-aminoethylpho 100.0 5.1E-50 1.1E-54 390.8 25.5 217 114-345 4-234 (362)
85 PRK14242 phosphate transporter 100.0 9.4E-50 2E-54 371.9 26.2 219 115-342 6-240 (253)
86 cd03296 ABC_CysA_sulfate_impor 100.0 8.8E-50 1.9E-54 369.2 25.7 213 115-342 2-229 (239)
87 PRK13650 cbiO cobalt transport 100.0 5.3E-50 1.2E-54 379.0 24.7 215 115-340 4-230 (279)
88 PRK09452 potA putrescine/sperm 100.0 9.7E-50 2.1E-54 390.3 27.2 217 114-345 13-240 (375)
89 PRK13631 cbiO cobalt transport 100.0 8.7E-50 1.9E-54 383.9 26.4 218 113-340 19-266 (320)
90 TIGR00972 3a0107s01c2 phosphat 100.0 1.1E-49 2.3E-54 370.4 25.9 221 116-345 2-238 (247)
91 TIGR00960 3a0501s02 Type II (G 100.0 2.3E-50 4.9E-55 367.4 21.0 202 116-328 2-216 (216)
92 PRK13637 cbiO cobalt transport 100.0 6.1E-50 1.3E-54 380.0 24.7 216 116-340 3-235 (287)
93 COG1131 CcmA ABC-type multidru 100.0 3E-50 6.6E-55 382.4 22.6 213 115-340 4-227 (293)
94 cd03219 ABC_Mj1267_LivG_branch 100.0 4.8E-50 1E-54 369.9 23.2 212 116-340 1-233 (236)
95 PRK10744 pstB phosphate transp 100.0 2E-49 4.4E-54 371.3 27.6 223 113-344 11-249 (260)
96 TIGR01186 proV glycine betaine 100.0 3.6E-50 7.8E-55 391.2 23.2 210 124-346 2-226 (363)
97 cd03263 ABC_subfamily_A The AB 100.0 5.2E-50 1.1E-54 365.9 22.9 210 116-337 1-219 (220)
98 PRK14247 phosphate ABC transpo 100.0 1.4E-49 3E-54 370.1 26.1 224 115-347 3-242 (250)
99 PRK13647 cbiO cobalt transport 100.0 8.3E-50 1.8E-54 376.7 24.2 211 115-337 4-225 (274)
100 PRK14267 phosphate ABC transpo 100.0 1.4E-49 3E-54 370.8 25.4 224 115-347 4-245 (253)
101 cd03256 ABC_PhnC_transporter A 100.0 7.1E-50 1.5E-54 369.8 23.2 211 116-338 1-233 (241)
102 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.2E-49 2.6E-54 369.0 24.4 220 116-345 1-231 (242)
103 COG3840 ThiQ ABC-type thiamine 100.0 5.9E-50 1.3E-54 343.9 20.6 210 116-342 2-222 (231)
104 PRK09536 btuD corrinoid ABC tr 100.0 1.5E-49 3.2E-54 391.4 26.5 213 115-340 3-229 (402)
105 PRK14259 phosphate ABC transpo 100.0 3.6E-49 7.9E-54 371.4 27.8 224 113-345 11-259 (269)
106 PRK11022 dppD dipeptide transp 100.0 2E-49 4.4E-54 382.4 26.4 228 115-350 3-254 (326)
107 PRK14235 phosphate transporter 100.0 3.4E-49 7.5E-54 371.2 27.2 221 113-342 17-254 (267)
108 PRK11000 maltose/maltodextrin 100.0 1.8E-49 3.8E-54 388.7 25.8 216 115-345 3-229 (369)
109 PRK13643 cbiO cobalt transport 100.0 1.4E-49 3.1E-54 377.6 24.2 215 116-340 2-234 (288)
110 PRK15079 oligopeptide ABC tran 100.0 2.7E-49 5.8E-54 382.0 26.4 226 115-350 8-262 (331)
111 cd03259 ABC_Carb_Solutes_like 100.0 9.6E-50 2.1E-54 362.5 21.7 202 116-332 1-213 (213)
112 PRK13635 cbiO cobalt transport 100.0 2.2E-49 4.7E-54 374.8 24.8 215 115-340 5-230 (279)
113 cd03258 ABC_MetN_methionine_tr 100.0 1.7E-49 3.7E-54 365.7 23.2 214 116-340 2-231 (233)
114 PRK14268 phosphate ABC transpo 100.0 3.5E-49 7.5E-54 369.3 25.6 223 114-345 11-248 (258)
115 TIGR02315 ABC_phnC phosphonate 100.0 1.6E-49 3.5E-54 368.0 23.0 211 116-338 2-234 (243)
116 PRK13634 cbiO cobalt transport 100.0 2.4E-49 5.3E-54 376.4 24.5 215 116-340 3-236 (290)
117 cd03224 ABC_TM1139_LivF_branch 100.0 2.5E-49 5.5E-54 361.7 23.6 212 116-339 1-221 (222)
118 PRK13646 cbiO cobalt transport 100.0 2.6E-49 5.7E-54 375.5 24.4 215 116-340 3-236 (286)
119 PRK14248 phosphate ABC transpo 100.0 7.3E-49 1.6E-53 369.1 27.2 220 114-342 20-255 (268)
120 PRK14274 phosphate ABC transpo 100.0 8.3E-49 1.8E-53 366.9 27.1 221 115-344 12-248 (259)
121 PRK13536 nodulation factor exp 100.0 2.5E-49 5.5E-54 383.3 24.3 213 114-340 40-262 (340)
122 cd03248 ABCC_TAP TAP, the Tran 100.0 2.8E-49 6E-54 362.7 23.2 216 113-328 9-226 (226)
123 PRK13651 cobalt transporter AT 100.0 3.1E-49 6.7E-54 377.8 24.4 215 116-340 3-255 (305)
124 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.6E-49 3.5E-54 362.2 21.4 202 116-328 1-218 (218)
125 cd03265 ABC_DrrA DrrA is the A 100.0 3.4E-49 7.5E-54 360.7 23.5 208 116-337 1-219 (220)
126 PRK14251 phosphate ABC transpo 100.0 5.6E-49 1.2E-53 366.3 25.3 224 115-347 4-243 (251)
127 PRK14245 phosphate ABC transpo 100.0 6.6E-49 1.4E-53 365.7 25.7 221 115-344 3-239 (250)
128 PRK11607 potG putrescine trans 100.0 5.6E-49 1.2E-53 385.4 26.4 217 114-345 18-245 (377)
129 PRK11629 lolD lipoprotein tran 100.0 5.4E-49 1.2E-53 362.5 24.7 208 115-333 5-228 (233)
130 cd03226 ABC_cobalt_CbiO_domain 100.0 2.5E-49 5.4E-54 357.8 22.0 198 117-329 1-205 (205)
131 PRK09473 oppD oligopeptide tra 100.0 6.6E-49 1.4E-53 379.3 26.4 229 115-351 12-263 (330)
132 COG4555 NatA ABC-type Na+ tran 100.0 5.2E-50 1.1E-54 349.4 16.6 213 115-340 1-223 (245)
133 PRK11308 dppF dipeptide transp 100.0 9.4E-49 2E-53 377.8 27.1 227 115-351 5-256 (327)
134 PRK14240 phosphate transporter 100.0 1.1E-48 2.3E-53 364.2 26.6 220 114-342 2-237 (250)
135 TIGR00954 3a01203 Peroxysomal 100.0 4.6E-48 9.9E-53 404.5 34.5 264 46-325 358-653 (659)
136 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3E-49 6.5E-54 372.0 22.8 218 117-347 26-258 (269)
137 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.3E-49 1.6E-53 362.4 24.9 211 116-340 2-222 (236)
138 PRK11831 putative ABC transpor 100.0 7E-49 1.5E-53 369.5 25.2 223 115-350 7-244 (269)
139 cd03268 ABC_BcrA_bacitracin_re 100.0 3.8E-49 8.2E-54 357.3 22.5 202 116-332 1-208 (208)
140 PTZ00243 ABC transporter; Prov 100.0 9.8E-48 2.1E-52 431.5 38.8 293 43-350 493-879 (1560)
141 TIGR03522 GldA_ABC_ATP gliding 100.0 5.7E-49 1.2E-53 375.8 24.6 211 116-340 3-222 (301)
142 PRK14256 phosphate ABC transpo 100.0 1.5E-48 3.2E-53 363.7 26.6 223 114-345 3-242 (252)
143 PRK15093 antimicrobial peptide 100.0 9E-49 2E-53 378.7 25.9 229 115-351 3-260 (330)
144 cd03264 ABC_drug_resistance_li 100.0 3.6E-49 7.9E-54 358.2 21.6 202 116-332 1-211 (211)
145 PRK14239 phosphate transporter 100.0 1.3E-48 2.8E-53 364.0 25.8 219 115-342 5-239 (252)
146 TIGR01288 nodI ATP-binding ABC 100.0 6.7E-49 1.5E-53 375.6 24.5 212 115-340 4-225 (303)
147 cd03218 ABC_YhbG The ABC trans 100.0 5E-49 1.1E-53 362.2 22.8 211 116-339 1-222 (232)
148 TIGR03005 ectoine_ehuA ectoine 100.0 1.1E-48 2.3E-53 364.7 25.1 217 116-345 1-242 (252)
149 PRK13636 cbiO cobalt transport 100.0 7.6E-49 1.7E-53 371.8 24.5 214 115-340 5-232 (283)
150 cd03266 ABC_NatA_sodium_export 100.0 4.4E-49 9.5E-54 359.3 21.9 205 116-332 2-218 (218)
151 PRK09493 glnQ glutamine ABC tr 100.0 1.2E-48 2.6E-53 361.7 24.9 213 116-341 2-227 (240)
152 PRK14249 phosphate ABC transpo 100.0 2.3E-48 5E-53 362.2 26.9 219 115-342 4-238 (251)
153 PRK14237 phosphate transporter 100.0 2.7E-48 5.8E-53 365.1 27.5 220 114-342 19-254 (267)
154 COG4175 ProV ABC-type proline/ 100.0 2.6E-49 5.6E-54 365.5 20.0 223 115-348 4-263 (386)
155 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-48 2.4E-53 362.3 24.4 212 115-339 2-231 (242)
156 PRK14262 phosphate ABC transpo 100.0 1.8E-48 4E-53 362.6 25.9 224 115-347 3-242 (250)
157 PRK11264 putative amino-acid A 100.0 1.6E-48 3.5E-53 362.8 25.5 215 115-342 3-236 (250)
158 PRK10070 glycine betaine trans 100.0 1.4E-48 3E-53 384.3 26.4 203 132-345 43-260 (400)
159 PRK13652 cbiO cobalt transport 100.0 1.3E-48 2.7E-53 369.2 24.9 214 115-340 3-228 (277)
160 PRK13644 cbiO cobalt transport 100.0 1.3E-48 2.9E-53 368.5 24.9 213 116-340 2-225 (274)
161 PRK14270 phosphate ABC transpo 100.0 2.6E-48 5.6E-53 361.9 26.5 219 115-342 4-238 (251)
162 PRK14238 phosphate transporter 100.0 2.9E-48 6.3E-53 365.7 27.1 224 112-344 21-260 (271)
163 PRK14244 phosphate ABC transpo 100.0 9.7E-49 2.1E-53 364.7 23.5 221 116-345 6-243 (251)
164 TIGR02769 nickel_nikE nickel i 100.0 2.1E-48 4.6E-53 365.4 25.9 216 115-340 2-241 (265)
165 PRK14261 phosphate ABC transpo 100.0 2.6E-48 5.6E-53 362.3 26.0 226 115-349 6-247 (253)
166 PRK13640 cbiO cobalt transport 100.0 1.4E-48 3E-53 369.9 24.4 216 114-340 4-233 (282)
167 cd03301 ABC_MalK_N The N-termi 100.0 6.7E-49 1.5E-53 356.8 21.4 202 116-332 1-213 (213)
168 PRK14243 phosphate transporter 100.0 3.4E-48 7.3E-53 363.9 26.7 220 115-343 10-252 (264)
169 PRK10619 histidine/lysine/argi 100.0 2.6E-48 5.7E-53 363.1 25.8 216 114-341 4-243 (257)
170 PRK13641 cbiO cobalt transport 100.0 1.7E-48 3.8E-53 370.1 25.0 216 115-340 2-235 (287)
171 PRK10575 iron-hydroxamate tran 100.0 1.3E-48 2.9E-53 366.8 23.6 212 115-339 11-237 (265)
172 cd03293 ABC_NrtD_SsuB_transpor 100.0 8.1E-49 1.8E-53 358.2 21.6 203 116-334 1-218 (220)
173 cd03250 ABCC_MRP_domain1 Domai 100.0 1.7E-48 3.6E-53 352.2 23.2 199 116-327 1-204 (204)
174 PRK13632 cbiO cobalt transport 100.0 1.6E-48 3.5E-53 367.4 24.0 215 115-340 7-232 (271)
175 cd03225 ABC_cobalt_CbiO_domain 100.0 6.8E-49 1.5E-53 356.3 20.6 200 117-327 1-211 (211)
176 TIGR02211 LolD_lipo_ex lipopro 100.0 1.2E-48 2.5E-53 357.2 22.3 203 116-329 2-220 (221)
177 PRK14253 phosphate ABC transpo 100.0 4.1E-48 8.9E-53 360.0 26.4 218 115-341 3-235 (249)
178 PRK11124 artP arginine transpo 100.0 2.3E-48 5E-53 360.2 24.5 212 115-339 2-230 (242)
179 PRK14236 phosphate transporter 100.0 6.1E-48 1.3E-52 363.6 27.4 220 113-341 23-258 (272)
180 cd03247 ABCC_cytochrome_bd The 100.0 1.4E-48 3.1E-53 345.5 21.7 178 116-332 1-178 (178)
181 PRK14254 phosphate ABC transpo 100.0 5.5E-48 1.2E-52 366.2 27.2 220 113-341 37-271 (285)
182 PRK11231 fecE iron-dicitrate t 100.0 1.9E-48 4E-53 363.7 23.5 212 115-339 2-227 (255)
183 PRK13648 cbiO cobalt transport 100.0 2.2E-48 4.7E-53 366.1 24.0 215 115-340 7-232 (269)
184 PRK13649 cbiO cobalt transport 100.0 2E-48 4.3E-53 368.4 23.8 215 116-340 3-235 (280)
185 COG0444 DppD ABC-type dipeptid 100.0 2.1E-48 4.5E-53 363.6 23.4 230 116-353 2-257 (316)
186 PRK10253 iron-enterobactin tra 100.0 2.3E-48 4.9E-53 365.2 23.6 213 114-339 6-233 (265)
187 PRK10895 lipopolysaccharide AB 100.0 4E-48 8.7E-53 358.4 24.9 213 115-340 3-227 (241)
188 PRK13548 hmuV hemin importer A 100.0 5.3E-48 1.1E-52 361.4 25.7 213 115-340 2-231 (258)
189 PRK11614 livF leucine/isoleuci 100.0 3E-48 6.4E-53 358.4 23.7 214 115-340 5-227 (237)
190 TIGR02673 FtsE cell division A 100.0 1.3E-48 2.7E-53 355.3 20.8 200 116-327 2-214 (214)
191 cd03292 ABC_FtsE_transporter F 100.0 1.6E-48 3.5E-53 354.4 21.5 201 116-328 1-214 (214)
192 COG0410 LivF ABC-type branched 100.0 2.1E-48 4.5E-53 347.4 21.7 215 115-341 3-228 (237)
193 PRK14275 phosphate ABC transpo 100.0 5.4E-48 1.2E-52 366.5 25.9 226 113-347 37-278 (286)
194 PRK14241 phosphate transporter 100.0 6.1E-48 1.3E-52 360.9 25.9 218 115-341 4-244 (258)
195 COG1137 YhbG ABC-type (unclass 100.0 4.3E-50 9.2E-55 349.6 10.4 215 114-341 3-230 (243)
196 PRK13642 cbiO cobalt transport 100.0 4.1E-48 9E-53 365.7 24.8 215 115-340 4-230 (277)
197 PRK14260 phosphate ABC transpo 100.0 5.9E-48 1.3E-52 361.2 25.6 220 115-343 7-247 (259)
198 PRK14265 phosphate ABC transpo 100.0 1E-47 2.2E-52 362.5 27.3 223 112-343 17-262 (274)
199 PRK13633 cobalt transporter AT 100.0 3.4E-48 7.4E-53 366.8 23.9 215 115-340 4-234 (280)
200 PRK13638 cbiO cobalt transport 100.0 2.8E-48 6.2E-53 365.7 23.2 212 116-340 2-226 (271)
201 PRK11300 livG leucine/isoleuci 100.0 4.9E-48 1.1E-52 360.6 24.5 213 115-340 5-244 (255)
202 PRK14272 phosphate ABC transpo 100.0 7.1E-48 1.5E-52 359.0 25.5 224 115-347 4-244 (252)
203 TIGR01188 drrA daunorubicin re 100.0 2.1E-48 4.4E-53 372.1 22.4 203 124-340 2-214 (302)
204 TIGR03410 urea_trans_UrtE urea 100.0 2.8E-48 6E-53 356.9 22.4 210 116-337 1-219 (230)
205 PRK14271 phosphate ABC transpo 100.0 8.8E-48 1.9E-52 363.3 26.3 220 115-343 21-255 (276)
206 PRK13645 cbiO cobalt transport 100.0 4.5E-48 9.8E-53 367.6 24.3 217 114-340 5-241 (289)
207 PRK14252 phosphate ABC transpo 100.0 1.2E-47 2.5E-52 360.4 26.6 222 112-342 13-252 (265)
208 PRK11247 ssuB aliphatic sulfon 100.0 6.7E-48 1.5E-52 360.3 24.8 204 114-335 11-219 (257)
209 PRK10584 putative ABC transpor 100.0 5.6E-48 1.2E-52 354.4 23.8 206 115-331 6-227 (228)
210 PRK14266 phosphate ABC transpo 100.0 1E-47 2.2E-52 357.6 25.8 222 115-345 3-240 (250)
211 TIGR03415 ABC_choXWV_ATP choli 100.0 5.2E-48 1.1E-52 377.9 24.6 213 121-346 30-261 (382)
212 PRK14263 phosphate ABC transpo 100.0 1.4E-47 3E-52 359.1 26.4 223 115-346 8-252 (261)
213 cd03235 ABC_Metallic_Cations A 100.0 1.9E-48 4.2E-53 353.9 19.8 197 117-332 1-213 (213)
214 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.8E-48 1.5E-52 349.9 23.2 200 116-332 1-211 (211)
215 cd03246 ABCC_Protease_Secretio 100.0 5.3E-48 1.1E-52 340.4 21.8 172 116-328 1-173 (173)
216 cd03269 ABC_putative_ATPase Th 100.0 3.5E-48 7.7E-53 351.5 21.3 200 116-332 1-210 (210)
217 PRK15112 antimicrobial peptide 100.0 1E-47 2.3E-52 361.1 25.2 228 115-352 4-253 (267)
218 PRK10247 putative ABC transpor 100.0 5.4E-48 1.2E-52 354.2 22.5 209 115-335 7-223 (225)
219 TIGR03873 F420-0_ABC_ATP propo 100.0 6.5E-48 1.4E-52 360.2 23.5 211 116-339 2-226 (256)
220 PRK13639 cbiO cobalt transport 100.0 6.6E-48 1.4E-52 364.0 23.7 213 116-340 2-227 (275)
221 cd03257 ABC_NikE_OppD_transpor 100.0 1E-47 2.2E-52 352.4 24.0 207 116-332 2-228 (228)
222 COG0411 LivG ABC-type branched 100.0 5.7E-49 1.2E-53 353.5 15.1 214 115-341 4-241 (250)
223 PRK10908 cell division protein 100.0 7.9E-48 1.7E-52 352.2 22.8 203 116-330 2-217 (222)
224 PRK11144 modC molybdate transp 100.0 1.1E-47 2.4E-52 374.1 25.2 211 116-342 2-221 (352)
225 cd03291 ABCC_CFTR1 The CFTR su 100.0 6E-47 1.3E-51 358.0 29.4 211 113-340 37-248 (282)
226 PRK14255 phosphate ABC transpo 100.0 2.2E-47 4.8E-52 355.7 25.9 220 115-343 5-240 (252)
227 cd03262 ABC_HisP_GlnQ_permease 100.0 4.8E-48 1E-52 351.1 20.8 200 116-328 1-213 (213)
228 cd03290 ABCC_SUR1_N The SUR do 100.0 1.3E-47 2.8E-52 349.8 23.4 210 117-327 2-218 (218)
229 PRK14258 phosphate ABC transpo 100.0 2.7E-47 5.9E-52 357.1 25.7 221 114-343 6-249 (261)
230 PRK10771 thiQ thiamine transpo 100.0 3.3E-47 7.1E-52 350.5 25.5 208 116-340 2-220 (232)
231 PRK11701 phnK phosphonate C-P 100.0 3E-47 6.4E-52 356.2 25.5 223 115-349 6-251 (258)
232 cd03300 ABC_PotA_N PotA is an 100.0 1.4E-47 3.1E-52 353.0 22.9 211 116-341 1-222 (232)
233 PRK14264 phosphate ABC transpo 100.0 5.3E-47 1.1E-51 362.8 27.3 219 114-341 44-291 (305)
234 PRK09984 phosphonate/organopho 100.0 3E-47 6.6E-52 356.9 25.0 223 115-353 4-253 (262)
235 TIGR01978 sufC FeS assembly AT 100.0 1.4E-47 3.1E-52 354.8 22.2 211 116-338 1-233 (243)
236 TIGR00968 3a0106s01 sulfate AB 100.0 4.4E-47 9.5E-52 350.9 25.1 211 116-341 1-222 (237)
237 PRK14246 phosphate ABC transpo 100.0 3.4E-47 7.4E-52 355.7 24.5 226 114-348 9-250 (257)
238 COG1123 ATPase components of v 100.0 2.2E-47 4.9E-52 380.1 24.1 230 114-353 279-533 (539)
239 cd03299 ABC_ModC_like Archeal 100.0 3.5E-47 7.6E-52 351.1 23.6 210 116-341 1-221 (235)
240 TIGR01277 thiQ thiamine ABC tr 100.0 4.2E-47 9.1E-52 345.4 22.8 201 116-333 1-212 (213)
241 PRK10418 nikD nickel transport 100.0 1.1E-46 2.3E-51 351.8 26.1 216 115-343 4-234 (254)
242 TIGR03740 galliderm_ABC gallid 100.0 1E-46 2.3E-51 345.0 25.1 204 116-336 1-210 (223)
243 TIGR02142 modC_ABC molybdenum 100.0 4.5E-47 9.8E-52 370.2 23.7 211 120-345 4-227 (354)
244 PRK13547 hmuV hemin importer A 100.0 8.1E-47 1.8E-51 355.8 24.5 211 116-339 2-244 (272)
245 PRK11248 tauB taurine transpor 100.0 8.3E-47 1.8E-51 352.7 23.4 201 116-334 2-215 (255)
246 cd03228 ABCC_MRP_Like The MRP 100.0 6.6E-47 1.4E-51 332.8 21.1 171 116-327 1-171 (171)
247 TIGR02323 CP_lyasePhnK phospho 100.0 2.6E-46 5.7E-51 348.7 25.9 222 115-348 3-247 (253)
248 PRK10419 nikE nickel transport 100.0 3.9E-46 8.4E-51 350.7 25.1 224 115-349 3-250 (268)
249 cd03229 ABC_Class3 This class 100.0 2.8E-46 6E-51 330.9 21.5 172 116-327 1-178 (178)
250 TIGR02982 heterocyst_DevA ABC 100.0 1.8E-46 4E-51 342.8 20.9 202 116-328 2-219 (220)
251 cd03230 ABC_DR_subfamily_A Thi 100.0 2.5E-46 5.5E-51 329.7 20.9 170 116-328 1-173 (173)
252 cd03297 ABC_ModC_molybdenum_tr 100.0 2.5E-46 5.4E-51 340.5 21.5 197 120-332 5-214 (214)
253 PRK10261 glutathione transport 100.0 5.8E-46 1.2E-50 386.9 26.7 225 115-349 313-563 (623)
254 PRK09544 znuC high-affinity zi 100.0 9.5E-46 2E-50 344.8 24.9 208 115-349 4-217 (251)
255 PRK15056 manganese/iron transp 100.0 9.1E-46 2E-50 348.8 23.9 209 115-339 6-230 (272)
256 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-45 2.5E-50 376.8 26.3 212 115-339 11-229 (510)
257 cd03233 ABC_PDR_domain1 The pl 100.0 5.9E-46 1.3E-50 335.4 21.4 190 115-332 3-202 (202)
258 COG1123 ATPase components of v 100.0 6.2E-46 1.3E-50 369.8 23.3 229 115-352 5-257 (539)
259 COG4598 HisP ABC-type histidin 100.0 8.7E-47 1.9E-51 323.8 14.2 217 115-344 6-246 (256)
260 COG4559 ABC-type hemin transpo 100.0 6.2E-46 1.3E-50 326.3 19.8 213 115-340 1-231 (259)
261 cd03234 ABCG_White The White s 100.0 8.5E-46 1.8E-50 339.7 21.5 203 116-332 4-226 (226)
262 PRK09700 D-allose transporter 100.0 9.3E-46 2E-50 377.6 23.6 212 115-339 5-234 (510)
263 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.6E-45 3.5E-50 332.0 22.4 185 116-338 1-192 (200)
264 PRK13549 xylose transporter AT 100.0 1.1E-45 2.4E-50 376.6 24.1 211 115-338 5-231 (506)
265 cd03213 ABCG_EPDR ABCG transpo 100.0 7.4E-46 1.6E-50 332.7 20.1 182 115-332 3-194 (194)
266 PRK10762 D-ribose transporter 100.0 1.2E-45 2.6E-50 376.0 24.1 211 115-338 4-229 (501)
267 CHL00131 ycf16 sulfate ABC tra 100.0 2.8E-45 6E-50 341.5 23.6 211 115-337 7-239 (252)
268 cd03214 ABC_Iron-Siderophores_ 100.0 1.2E-45 2.6E-50 327.5 19.7 177 117-332 1-180 (180)
269 TIGR03608 L_ocin_972_ABC putat 100.0 8.4E-46 1.8E-50 334.7 19.2 193 118-323 1-206 (206)
270 cd03215 ABC_Carb_Monos_II This 100.0 1.3E-45 2.9E-50 327.7 19.7 172 115-328 4-182 (182)
271 cd03232 ABC_PDR_domain2 The pl 100.0 1.5E-45 3.2E-50 330.2 19.8 181 115-332 3-192 (192)
272 PRK03695 vitamin B12-transport 100.0 3.1E-45 6.6E-50 340.8 22.5 205 117-339 2-222 (248)
273 TIGR02770 nickel_nikD nickel i 100.0 2.9E-45 6.3E-50 337.1 21.9 206 132-347 1-223 (230)
274 cd03267 ABC_NatA_like Similar 100.0 3.2E-45 6.8E-50 338.3 20.8 190 131-332 35-236 (236)
275 PRK10938 putative molybdenum t 100.0 4.6E-45 1E-49 370.8 23.6 212 115-340 3-225 (490)
276 PRK15134 microcin C ABC transp 100.0 4.6E-45 1E-49 374.0 23.4 220 115-345 275-521 (529)
277 cd03223 ABCD_peroxisomal_ALDP 100.0 5.7E-45 1.2E-49 319.1 20.6 164 116-327 1-164 (166)
278 cd03216 ABC_Carb_Monos_I This 100.0 1.2E-44 2.5E-49 316.2 22.4 159 116-330 1-162 (163)
279 PRK15134 microcin C ABC transp 100.0 1.7E-44 3.7E-49 369.8 26.8 220 115-342 5-249 (529)
280 cd03231 ABC_CcmA_heme_exporter 100.0 9.8E-45 2.1E-49 327.1 22.0 194 116-323 1-198 (201)
281 COG4181 Predicted ABC-type tra 100.0 4E-45 8.7E-50 311.2 17.9 206 115-331 6-227 (228)
282 PRK10261 glutathione transport 100.0 6.1E-45 1.3E-49 379.2 22.8 224 114-345 11-264 (623)
283 PRK09580 sufC cysteine desulfu 100.0 2.3E-44 5E-49 334.4 24.3 210 116-337 2-233 (248)
284 PRK13538 cytochrome c biogenes 100.0 9.6E-45 2.1E-49 327.8 21.1 194 116-323 2-202 (204)
285 PRK10982 galactose/methyl gala 100.0 1.2E-44 2.6E-49 367.8 23.2 207 118-337 1-221 (491)
286 PRK11288 araG L-arabinose tran 100.0 2.1E-44 4.6E-49 366.8 24.9 207 115-334 4-224 (501)
287 TIGR01184 ntrCD nitrate transp 100.0 1E-44 2.2E-49 333.6 20.3 189 133-337 1-202 (230)
288 TIGR02633 xylG D-xylose ABC tr 100.0 2E-44 4.4E-49 366.9 24.0 210 116-337 2-228 (500)
289 COG4608 AppF ABC-type oligopep 100.0 1.8E-44 3.9E-49 330.6 20.1 199 115-352 4-212 (268)
290 TIGR03269 met_CoM_red_A2 methy 100.0 2.2E-44 4.9E-49 368.2 23.0 220 114-339 278-517 (520)
291 PRK13543 cytochrome c biogenes 100.0 4.9E-44 1.1E-48 325.6 21.9 195 115-325 11-212 (214)
292 PRK13540 cytochrome c biogenes 100.0 3.9E-44 8.5E-49 322.8 20.9 193 116-322 2-198 (200)
293 COG4172 ABC-type uncharacteriz 100.0 1.3E-43 2.8E-48 336.4 24.7 226 114-350 275-527 (534)
294 COG4604 CeuD ABC-type enteroch 100.0 4.9E-45 1.1E-49 317.2 13.4 220 115-349 1-233 (252)
295 COG4619 ABC-type uncharacteriz 100.0 1.6E-44 3.4E-49 306.7 15.4 190 129-328 15-212 (223)
296 PRK13549 xylose transporter AT 100.0 3.7E-44 7.9E-49 365.5 21.2 213 115-337 259-492 (506)
297 TIGR03269 met_CoM_red_A2 methy 100.0 4.7E-44 1E-48 365.9 21.5 212 116-340 1-259 (520)
298 COG4161 ArtP ABC-type arginine 100.0 2.2E-44 4.7E-49 304.2 15.3 212 115-339 2-230 (242)
299 PRK13539 cytochrome c biogenes 100.0 1.4E-43 3E-48 321.0 21.7 194 115-325 2-200 (207)
300 PRK09700 D-allose transporter 100.0 7.8E-44 1.7E-48 363.4 21.5 208 115-336 265-495 (510)
301 TIGR01257 rim_protein retinal- 100.0 1.3E-43 2.8E-48 397.8 25.1 215 115-341 928-1151(2272)
302 TIGR01189 ccmA heme ABC export 100.0 1.1E-43 2.3E-48 319.4 19.8 192 116-322 1-197 (198)
303 TIGR02324 CP_lyasePhnL phospho 100.0 2.3E-43 4.9E-48 323.1 21.1 198 116-323 2-222 (224)
304 COG1129 MglA ABC-type sugar tr 100.0 3.4E-43 7.4E-48 348.0 23.1 207 115-334 8-229 (500)
305 PRK13546 teichoic acids export 100.0 7.9E-43 1.7E-47 327.3 23.8 203 115-341 4-234 (264)
306 TIGR01257 rim_protein retinal- 100.0 3.8E-43 8.2E-48 394.1 25.2 216 113-340 1935-2160(2272)
307 TIGR02633 xylG D-xylose ABC tr 100.0 2.6E-43 5.6E-48 358.8 20.9 212 115-336 257-489 (500)
308 COG4525 TauB ABC-type taurine 100.0 1.5E-43 3.3E-48 307.5 15.7 204 115-334 3-219 (259)
309 TIGR03771 anch_rpt_ABC anchore 100.0 3.4E-43 7.4E-48 322.0 18.8 186 138-340 1-202 (223)
310 TIGR01166 cbiO cobalt transpor 100.0 2.4E-43 5.2E-48 315.1 17.3 173 131-314 6-190 (190)
311 COG4152 ABC-type uncharacteriz 100.0 1.1E-43 2.4E-48 317.9 14.2 209 115-340 2-220 (300)
312 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 8.2E-43 1.8E-47 319.7 20.1 192 116-332 23-224 (224)
313 PRK10762 D-ribose transporter 100.0 7.7E-43 1.7E-47 355.4 20.8 206 115-337 257-482 (501)
314 COG4148 ModC ABC-type molybdat 100.0 3.5E-43 7.6E-48 319.9 16.1 196 135-341 16-220 (352)
315 PRK10535 macrolide transporter 100.0 3E-42 6.5E-47 360.3 25.3 213 115-338 4-231 (648)
316 PLN03211 ABC transporter G-25; 100.0 1.3E-42 2.9E-47 362.2 22.2 198 130-338 81-295 (659)
317 PRK15064 ABC transporter ATP-b 100.0 2.6E-42 5.7E-47 353.7 23.8 199 116-339 2-242 (530)
318 PRK11288 araG L-arabinose tran 100.0 1.5E-42 3.2E-47 353.3 21.4 208 115-338 257-484 (501)
319 PRK13545 tagH teichoic acids e 100.0 5.2E-42 1.1E-46 342.9 24.5 202 115-340 21-233 (549)
320 PRK13541 cytochrome c biogenes 100.0 2.3E-42 5E-47 310.1 19.6 188 116-321 2-193 (195)
321 PRK15064 ABC transporter ATP-b 100.0 4.3E-42 9.4E-47 352.1 23.7 202 114-340 318-526 (530)
322 COG4172 ABC-type uncharacteriz 100.0 3.1E-42 6.7E-47 327.1 20.6 231 115-353 6-261 (534)
323 COG3845 ABC-type uncharacteriz 100.0 3.3E-42 7.2E-47 335.2 21.0 206 115-333 4-223 (501)
324 TIGR01187 potA spermidine/putr 100.0 3.5E-42 7.6E-47 332.1 20.1 185 148-345 1-196 (325)
325 PRK15439 autoinducer 2 ABC tra 100.0 2.1E-42 4.6E-47 352.8 19.1 208 115-339 268-492 (510)
326 PRK11819 putative ABC transpor 100.0 1E-41 2.2E-46 351.1 23.3 210 115-339 6-250 (556)
327 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.4E-42 1.6E-46 351.9 21.9 210 115-339 4-248 (552)
328 TIGR00956 3a01205 Pleiotropic 100.0 1E-41 2.2E-46 379.9 22.6 210 115-335 759-989 (1394)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.2E-41 4.7E-46 289.7 19.5 143 116-327 1-144 (144)
330 PRK10982 galactose/methyl gala 100.0 2.7E-41 6E-46 343.2 21.8 209 114-336 249-477 (491)
331 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.5E-41 5.5E-46 314.0 19.5 192 123-338 1-206 (246)
332 PRK10938 putative molybdenum t 100.0 1.8E-41 4E-46 344.4 19.2 207 114-332 259-485 (490)
333 TIGR00955 3a01204 The Eye Pigm 100.0 6.1E-41 1.3E-45 348.8 21.0 200 129-338 37-255 (617)
334 PRK15177 Vi polysaccharide exp 100.0 1.3E-40 2.9E-45 302.9 20.5 183 132-338 2-191 (213)
335 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.1E-41 6.7E-46 314.9 15.9 205 119-337 4-228 (255)
336 COG4167 SapF ABC-type antimicr 100.0 9.1E-41 2E-45 287.5 17.3 228 116-353 5-254 (267)
337 COG4674 Uncharacterized ABC-ty 100.0 1E-40 2.3E-45 289.7 15.6 214 115-341 5-237 (249)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6E-40 1.3E-44 337.7 23.8 201 114-339 321-531 (552)
339 PRK11819 putative ABC transpor 100.0 8.2E-40 1.8E-44 336.9 24.8 202 114-340 323-534 (556)
340 PRK10636 putative ABC transpor 100.0 1.8E-39 3.9E-44 338.6 26.7 200 114-338 311-516 (638)
341 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.4E-39 3.1E-44 282.1 20.1 154 118-327 2-157 (157)
342 cd03222 ABC_RNaseL_inhibitor T 100.0 4.7E-40 1E-44 290.2 17.2 154 119-338 4-162 (177)
343 PLN03073 ABC transporter F fam 100.0 3.7E-39 8E-44 338.4 24.6 199 114-337 507-712 (718)
344 PRK13409 putative ATPase RIL; 100.0 1.5E-39 3.2E-44 335.5 21.0 192 114-333 339-536 (590)
345 PRK10636 putative ABC transpor 100.0 4.1E-39 8.9E-44 336.0 24.2 198 116-338 2-235 (638)
346 PRK11147 ABC transporter ATPas 100.0 3.7E-39 8E-44 336.6 23.9 198 115-337 319-526 (635)
347 COG1119 ModF ABC-type molybden 100.0 3.8E-39 8.1E-44 290.1 18.9 207 114-333 30-256 (257)
348 COG1101 PhnK ABC-type uncharac 100.0 1.8E-39 3.9E-44 286.1 15.9 215 117-333 3-232 (263)
349 cd03238 ABC_UvrA The excision 100.0 2.9E-38 6.3E-43 278.6 18.7 155 130-327 8-165 (176)
350 PRK11147 ABC transporter ATPas 100.0 7.7E-38 1.7E-42 326.7 24.6 197 115-339 3-243 (635)
351 PLN03140 ABC transporter G fam 100.0 5.8E-38 1.2E-42 349.4 24.9 211 115-335 867-1106(1470)
352 COG0396 sufC Cysteine desulfur 100.0 1.9E-37 4.2E-42 276.2 21.4 214 115-339 3-233 (251)
353 COG4178 ABC-type uncharacteriz 100.0 1.7E-36 3.7E-41 305.7 30.5 263 44-324 316-587 (604)
354 COG4107 PhnK ABC-type phosphon 100.0 6E-38 1.3E-42 268.1 16.3 225 115-351 6-253 (258)
355 COG1134 TagH ABC-type polysacc 100.0 2.5E-37 5.4E-42 278.6 20.2 189 130-340 40-237 (249)
356 PRK13409 putative ATPase RIL; 100.0 1.8E-38 3.9E-43 327.5 14.0 192 120-326 78-287 (590)
357 TIGR00956 3a01205 Pleiotropic 100.0 9.6E-38 2.1E-42 348.1 19.0 200 130-337 74-298 (1394)
358 COG4586 ABC-type uncharacteriz 100.0 2E-37 4.3E-42 281.7 14.4 198 131-340 38-247 (325)
359 COG4136 ABC-type uncharacteriz 100.0 6.8E-37 1.5E-41 255.8 15.6 194 115-323 2-207 (213)
360 PLN03140 ABC transporter G fam 100.0 3.2E-37 7E-42 343.4 16.1 199 130-338 178-426 (1470)
361 COG0488 Uup ATPase components 100.0 3.2E-36 7E-41 304.6 20.6 209 115-339 3-240 (530)
362 PLN03073 ABC transporter F fam 100.0 3E-36 6.6E-41 316.5 20.3 221 114-338 176-430 (718)
363 COG4615 PvdE ABC-type sideroph 100.0 4.9E-35 1.1E-39 277.3 24.0 258 59-332 271-530 (546)
364 KOG0061 Transporter, ABC super 100.0 1.9E-35 4E-40 305.9 19.2 215 114-338 24-259 (613)
365 PF00005 ABC_tran: ABC transpo 100.0 7E-36 1.5E-40 252.4 11.2 136 133-281 1-137 (137)
366 COG0488 Uup ATPase components 100.0 9.2E-34 2E-38 286.7 26.2 202 113-339 319-525 (530)
367 COG4133 CcmA ABC-type transpor 100.0 3.7E-35 7.9E-40 254.1 12.8 187 116-316 3-195 (209)
368 KOG0059 Lipid exporter ABCA1 a 100.0 5.6E-35 1.2E-39 314.0 15.2 215 114-340 563-788 (885)
369 cd03270 ABC_UvrA_I The excisio 100.0 1.1E-33 2.3E-38 259.8 17.4 188 130-332 8-226 (226)
370 KOG0060 Long-chain acyl-CoA tr 100.0 7.2E-32 1.6E-36 266.1 26.9 301 15-326 306-642 (659)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 2.5E-33 5.4E-38 252.0 12.9 164 134-325 14-190 (197)
372 COG4778 PhnL ABC-type phosphon 100.0 3.3E-33 7E-38 238.2 11.4 201 115-325 4-227 (235)
373 cd03271 ABC_UvrA_II The excisi 100.0 4E-32 8.6E-37 253.3 15.2 193 132-334 10-261 (261)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.1E-31 2.3E-36 248.7 14.7 191 116-324 4-234 (243)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 2.5E-31 5.5E-36 241.8 13.2 193 115-328 5-211 (213)
376 COG4138 BtuD ABC-type cobalami 100.0 6.8E-32 1.5E-36 231.1 6.9 207 116-340 4-222 (248)
377 COG1129 MglA ABC-type sugar tr 100.0 3.5E-30 7.5E-35 255.5 16.3 206 115-336 263-487 (500)
378 cd03273 ABC_SMC2_euk Eukaryoti 100.0 8.6E-30 1.9E-34 237.4 14.6 181 143-324 25-242 (251)
379 cd03240 ABC_Rad50 The catalyti 100.0 1E-29 2.2E-34 229.8 12.6 164 136-326 16-198 (204)
380 cd03274 ABC_SMC4_euk Eukaryoti 100.0 5.5E-30 1.2E-34 232.8 10.5 184 115-325 5-204 (212)
381 COG4170 SapD ABC-type antimicr 100.0 7.6E-29 1.6E-33 218.1 14.3 229 116-352 4-261 (330)
382 KOG0927 Predicted transporter 100.0 1.3E-29 2.8E-34 248.6 10.4 193 114-330 388-586 (614)
383 PRK00349 uvrA excinuclease ABC 100.0 3.1E-28 6.8E-33 260.2 20.4 106 245-350 823-938 (943)
384 PRK00635 excinuclease ABC subu 100.0 2.2E-27 4.9E-32 263.6 19.7 100 241-340 797-907 (1809)
385 cd03275 ABC_SMC1_euk Eukaryoti 100.0 8.6E-28 1.9E-32 223.5 13.5 202 115-325 3-233 (247)
386 COG3845 ABC-type uncharacteriz 99.9 4.1E-27 8.9E-32 229.8 16.1 214 112-336 254-489 (501)
387 KOG0927 Predicted transporter 99.9 8E-27 1.7E-31 229.1 18.1 225 111-339 71-309 (614)
388 KOG0065 Pleiotropic drug resis 99.9 9.2E-28 2E-32 255.8 10.9 199 128-336 802-1018(1391)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 8.7E-27 1.9E-31 209.7 11.7 172 133-327 12-192 (198)
390 KOG0062 ATPase component of AB 99.9 2.4E-26 5.3E-31 224.5 14.8 195 113-330 360-559 (582)
391 TIGR00630 uvra excinuclease AB 99.9 1.6E-25 3.5E-30 239.1 20.3 97 241-337 816-923 (924)
392 KOG0062 ATPase component of AB 99.9 2.9E-26 6.2E-31 224.0 10.1 198 114-338 79-284 (582)
393 COG1245 Predicted ATPase, RNas 99.9 1.6E-25 3.5E-30 216.1 14.9 182 116-325 343-531 (591)
394 KOG0066 eIF2-interacting prote 99.9 8E-26 1.7E-30 216.9 12.6 193 114-330 585-781 (807)
395 KOG0064 Peroxisomal long-chain 99.9 2.1E-24 4.5E-29 211.2 20.1 194 114-323 480-681 (728)
396 KOG2355 Predicted ABC-type tra 99.9 8.8E-24 1.9E-28 185.6 16.0 209 113-335 11-233 (291)
397 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.7E-23 3.7E-28 188.6 12.0 146 132-332 16-172 (200)
398 cd03239 ABC_SMC_head The struc 99.9 6E-23 1.3E-27 181.7 12.6 73 253-325 95-172 (178)
399 cd03241 ABC_RecN RecN ATPase i 99.9 5.4E-23 1.2E-27 194.3 12.9 76 252-327 170-249 (276)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1.8E-22 3.9E-27 183.6 11.5 181 134-327 15-211 (213)
401 KOG0065 Pleiotropic drug resis 99.9 9.8E-22 2.1E-26 210.1 13.3 199 130-338 128-350 (1391)
402 cd03227 ABC_Class2 ABC-type Cl 99.9 2.2E-21 4.8E-26 169.1 9.8 136 136-325 14-155 (162)
403 COG1245 Predicted ATPase, RNas 99.8 9.6E-22 2.1E-26 190.0 7.7 185 120-325 79-288 (591)
404 PRK00635 excinuclease ABC subu 99.8 1.3E-20 2.8E-25 210.1 16.8 211 132-343 1505-1800(1809)
405 COG2401 ABC-type ATPase fused 99.8 1.7E-20 3.8E-25 179.5 14.2 179 130-329 396-588 (593)
406 COG0178 UvrA Excinuclease ATPa 99.8 2.7E-20 5.9E-25 190.5 16.6 106 245-350 815-930 (935)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.8 7.6E-21 1.7E-25 174.0 10.0 151 131-333 18-175 (222)
408 cd03242 ABC_RecF RecF is a rec 99.8 2.8E-20 6.1E-25 175.2 12.5 75 251-328 182-269 (270)
409 cd03243 ABC_MutS_homologs The 99.8 2.9E-20 6.2E-25 167.8 7.2 154 135-337 21-177 (202)
410 KOG0066 eIF2-interacting prote 99.8 9.5E-21 2.1E-25 182.2 3.7 201 115-330 264-489 (807)
411 cd03283 ABC_MutS-like MutS-lik 99.8 9.6E-20 2.1E-24 164.0 8.9 140 131-323 15-163 (199)
412 cd01128 rho_factor Transcripti 99.8 3.5E-19 7.5E-24 165.3 5.9 189 138-340 11-218 (249)
413 TIGR00630 uvra excinuclease AB 99.8 1.8E-18 3.9E-23 185.3 11.5 100 241-340 475-584 (924)
414 TIGR02858 spore_III_AA stage I 99.8 4.2E-18 9.2E-23 159.7 12.3 142 144-338 112-268 (270)
415 PRK00349 uvrA excinuclease ABC 99.8 2E-18 4.4E-23 185.2 11.0 100 241-340 477-586 (943)
416 KOG0063 RNAse L inhibitor, ABC 99.7 1.5E-17 3.2E-22 160.0 11.8 191 123-338 343-547 (592)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.7 1.7E-17 3.8E-22 149.8 10.5 138 130-316 16-156 (204)
418 cd03284 ABC_MutS1 MutS1 homolo 99.7 1.9E-17 4.2E-22 150.9 8.0 154 131-337 19-179 (216)
419 cd00820 PEPCK_HprK Phosphoenol 99.7 3.3E-17 7.1E-22 132.0 6.4 75 131-213 3-77 (107)
420 PRK00064 recF recombination pr 99.7 1.2E-15 2.7E-20 149.3 15.4 76 251-328 272-359 (361)
421 PF02463 SMC_N: RecF/RecN/SMC 99.6 6.5E-16 1.4E-20 140.8 10.4 169 134-324 16-212 (220)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.6 5.9E-15 1.3E-19 134.3 11.9 131 132-316 18-159 (213)
423 smart00534 MUTSac ATPase domai 99.6 9.6E-16 2.1E-20 136.4 5.1 68 251-319 60-130 (185)
424 PRK07721 fliI flagellum-specif 99.6 3.3E-14 7.1E-19 141.7 15.4 168 131-336 147-340 (438)
425 TIGR00606 rad50 rad50. This fa 99.6 7.9E-15 1.7E-19 164.6 11.6 119 202-324 1153-1289(1311)
426 PHA02562 46 endonuclease subun 99.6 7.2E-15 1.6E-19 151.9 8.5 89 239-328 449-555 (562)
427 TIGR01069 mutS2 MutS2 family p 99.5 1.2E-14 2.7E-19 154.2 8.9 145 115-315 295-449 (771)
428 TIGR00634 recN DNA repair prot 99.5 4.3E-14 9.4E-19 146.1 9.3 77 251-327 439-519 (563)
429 PTZ00132 GTP-binding nuclear p 99.5 1.4E-13 3E-18 125.1 8.5 43 257-299 157-204 (215)
430 KOG0063 RNAse L inhibitor, ABC 99.5 7.1E-14 1.5E-18 134.9 6.6 172 141-325 98-288 (592)
431 PRK10869 recombination and rep 99.5 2E-13 4.3E-18 140.5 10.0 76 252-327 430-509 (553)
432 PRK14079 recF recombination pr 99.4 1.1E-12 2.3E-17 128.1 13.0 77 252-333 263-348 (349)
433 cd03287 ABC_MSH3_euk MutS3 hom 99.4 1.1E-12 2.3E-17 120.0 11.4 138 130-316 18-159 (222)
434 PRK08533 flagellar accessory p 99.4 2.4E-12 5.1E-17 118.6 13.7 157 115-324 7-184 (230)
435 PRK13695 putative NTPase; Prov 99.4 3E-13 6.4E-18 119.1 6.0 78 251-331 77-156 (174)
436 PRK00409 recombination and DNA 99.4 3.5E-12 7.5E-17 135.9 14.1 76 251-328 389-467 (782)
437 TIGR00618 sbcc exonuclease Sbc 99.4 1.7E-12 3.7E-17 143.2 9.9 81 246-326 944-1036(1042)
438 TIGR02788 VirB11 P-type DNA tr 99.4 1E-12 2.2E-17 126.1 7.0 144 136-339 137-281 (308)
439 cd01124 KaiC KaiC is a circadi 99.3 1.2E-11 2.6E-16 109.4 12.3 79 246-324 65-163 (187)
440 COG0178 UvrA Excinuclease ATPa 99.3 1.2E-11 2.5E-16 127.8 11.8 98 246-343 475-581 (935)
441 PRK01156 chromosome segregatio 99.3 6.1E-12 1.3E-16 137.0 10.0 76 249-324 798-883 (895)
442 PRK03918 chromosome segregatio 99.3 5.6E-12 1.2E-16 137.0 9.5 77 249-325 785-868 (880)
443 PRK06793 fliI flagellum-specif 99.3 1.9E-11 4.2E-16 121.2 12.2 169 114-333 129-305 (432)
444 PF13304 AAA_21: AAA domain; P 99.3 8.6E-12 1.9E-16 113.3 8.6 64 251-314 235-302 (303)
445 cd03286 ABC_MSH6_euk MutS6 hom 99.3 3.3E-11 7.2E-16 109.9 12.3 136 131-316 18-158 (218)
446 TIGR02168 SMC_prok_B chromosom 99.3 7.2E-12 1.6E-16 139.4 8.1 78 247-324 1084-1165(1179)
447 TIGR03238 dnd_assoc_3 dnd syst 99.3 2.7E-12 5.8E-17 127.3 3.9 67 131-200 20-87 (504)
448 cd01120 RecA-like_NTPases RecA 99.2 1.1E-10 2.3E-15 100.0 10.4 129 145-314 1-140 (165)
449 PRK13830 conjugal transfer pro 99.2 8E-11 1.7E-15 126.6 10.9 67 268-334 650-728 (818)
450 COG3910 Predicted ATPase [Gene 99.2 1.5E-10 3.3E-15 101.1 10.3 77 253-330 130-208 (233)
451 PRK10246 exonuclease subunit S 99.2 7.6E-11 1.7E-15 129.9 9.9 78 248-325 945-1032(1047)
452 TIGR02169 SMC_prok_A chromosom 99.2 5.7E-11 1.2E-15 132.4 8.8 77 249-325 1071-1151(1164)
453 cd01131 PilT Pilus retraction 99.1 1.2E-10 2.6E-15 104.8 7.3 118 145-323 3-121 (198)
454 smart00382 AAA ATPases associa 99.1 4.7E-09 1E-13 86.4 15.2 117 142-310 1-125 (148)
455 PRK02224 chromosome segregatio 99.1 2.5E-10 5.4E-15 124.2 8.5 77 250-326 779-869 (880)
456 PRK06067 flagellar accessory p 99.1 2.7E-09 5.9E-14 98.3 13.5 73 253-325 101-187 (234)
457 PRK06002 fliI flagellum-specif 98.9 2.1E-09 4.4E-14 107.0 8.0 86 113-200 137-229 (450)
458 PRK00300 gmk guanylate kinase; 98.9 3E-09 6.4E-14 95.8 8.2 66 141-211 3-80 (205)
459 TIGR02655 circ_KaiC circadian 98.9 1.9E-10 4.1E-15 117.1 -0.4 155 140-324 18-190 (484)
460 cd01130 VirB11-like_ATPase Typ 98.9 5.8E-09 1.3E-13 92.8 8.9 48 132-179 14-61 (186)
461 TIGR00611 recf recF protein. A 98.8 6.1E-09 1.3E-13 102.2 6.6 62 252-315 275-345 (365)
462 TIGR00767 rho transcription te 98.8 1.4E-08 3E-13 99.5 8.7 81 80-169 103-194 (415)
463 PRK13891 conjugal transfer pro 98.8 9.5E-08 2.1E-12 103.4 15.4 54 263-316 680-735 (852)
464 TIGR01026 fliI_yscN ATPase Fli 98.8 4.7E-08 1E-12 97.8 11.7 174 131-336 152-345 (440)
465 cd02023 UMPK Uridine monophosp 98.7 7.1E-09 1.5E-13 92.9 4.1 111 145-285 1-113 (198)
466 TIGR01420 pilT_fam pilus retra 98.7 3.6E-08 7.8E-13 96.1 9.2 114 140-314 119-233 (343)
467 PRK07196 fliI flagellum-specif 98.7 8.9E-09 1.9E-13 102.4 4.4 81 131-212 144-234 (434)
468 cd01125 repA Hexameric Replica 98.7 3E-08 6.4E-13 91.7 6.8 44 267-311 108-159 (239)
469 PRK06995 flhF flagellar biosyn 98.7 9.1E-09 2E-13 103.7 2.9 62 132-212 245-306 (484)
470 PRK01889 GTPase RsgA; Reviewed 98.6 7.5E-08 1.6E-12 94.3 7.6 79 133-214 185-263 (356)
471 PRK10078 ribose 1,5-bisphospho 98.6 5.3E-08 1.2E-12 86.6 5.4 55 143-200 2-56 (186)
472 TIGR02680 conserved hypothetic 98.6 7.7E-08 1.7E-12 108.6 7.9 62 248-311 1243-1316(1353)
473 COG0419 SbcC ATPase involved i 98.6 1.2E-07 2.6E-12 103.6 9.0 79 248-326 811-898 (908)
474 PRK08149 ATP synthase SpaL; Va 98.6 6.8E-08 1.5E-12 96.0 5.8 69 131-200 140-215 (428)
475 TIGR02524 dot_icm_DotB Dot/Icm 98.5 1.1E-07 2.3E-12 93.1 6.1 88 141-229 132-234 (358)
476 TIGR03881 KaiC_arch_4 KaiC dom 98.5 6.7E-08 1.5E-12 88.6 3.6 58 139-200 16-77 (229)
477 PF09818 ABC_ATPase: Predicted 98.5 6.7E-07 1.5E-11 88.0 10.7 171 121-328 227-416 (448)
478 PLN03210 Resistant to P. syrin 98.5 2.3E-07 5E-12 103.8 8.2 44 136-179 200-244 (1153)
479 PRK13898 type IV secretion sys 98.5 2.1E-06 4.5E-11 92.8 15.2 49 266-314 638-688 (800)
480 PRK09825 idnK D-gluconate kina 98.5 1.2E-07 2.6E-12 83.7 4.3 53 142-200 2-55 (176)
481 PRK06315 type III secretion sy 98.5 1.4E-07 2.9E-12 94.3 4.7 100 131-231 153-276 (442)
482 PRK05399 DNA mismatch repair p 98.5 7.6E-07 1.6E-11 96.4 10.4 64 254-318 668-737 (854)
483 TIGR00235 udk uridine kinase. 98.4 9.8E-08 2.1E-12 86.3 2.7 29 141-169 4-32 (207)
484 TIGR02322 phosphon_PhnN phosph 98.4 4.7E-07 1E-11 79.7 6.7 62 143-205 1-78 (179)
485 TIGR02903 spore_lon_C ATP-depe 98.4 1.6E-06 3.4E-11 90.8 9.9 110 142-297 174-291 (615)
486 cd00009 AAA The AAA+ (ATPases 98.4 3.7E-06 8E-11 69.7 10.2 54 258-312 72-131 (151)
487 TIGR00416 sms DNA repair prote 98.3 1.3E-06 2.9E-11 88.1 8.5 42 139-180 90-132 (454)
488 PRK09862 putative ATP-dependen 98.3 3.9E-07 8.5E-12 92.6 4.6 63 118-182 187-249 (506)
489 PRK07594 type III secretion sy 98.3 5.1E-07 1.1E-11 89.9 5.1 64 115-180 129-192 (433)
490 TIGR00152 dephospho-CoA kinase 98.3 1.1E-06 2.3E-11 78.3 6.6 70 255-326 60-133 (188)
491 PLN02796 D-glycerate 3-kinase 98.3 1.7E-07 3.6E-12 90.5 1.4 61 131-191 80-151 (347)
492 PF13555 AAA_29: P-loop contai 98.3 4E-07 8.7E-12 66.0 2.8 39 133-171 12-51 (62)
493 PRK10416 signal recognition pa 98.3 4.1E-07 8.9E-12 87.7 3.7 61 141-201 112-178 (318)
494 COG3044 Predicted ATPase of th 98.3 4.5E-06 9.7E-11 81.1 10.4 160 137-329 237-412 (554)
495 cd01136 ATPase_flagellum-secre 98.3 9.1E-07 2E-11 85.2 5.6 49 131-180 58-106 (326)
496 PRK14722 flhF flagellar biosyn 98.3 3.1E-06 6.7E-11 83.0 9.1 37 131-167 125-161 (374)
497 PRK09270 nucleoside triphospha 98.3 7.8E-07 1.7E-11 81.8 4.7 32 143-174 33-64 (229)
498 cd01123 Rad51_DMC1_radA Rad51_ 98.2 6.2E-06 1.3E-10 75.7 9.7 41 140-180 16-63 (235)
499 PRK13873 conjugal transfer ATP 98.2 1.2E-05 2.6E-10 87.0 13.2 61 266-326 631-703 (811)
500 PTZ00035 Rad51 protein; Provis 98.2 6.2E-06 1.3E-10 80.2 9.2 77 139-221 114-197 (337)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-77 Score=643.23 Aligned_cols=353 Identities=54% Similarity=0.924 Sum_probs=334.8
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 2 KLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRI 81 (362)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
.++|.|++++|+..+++||+++|+|+++.+++.+++++.+....+.++|+.+|+.++|++.++..++++++...++++.+
T Consensus 1025 ~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m 1104 (1381)
T KOG0054|consen 1025 ELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNM 1104 (1381)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999988887777666555447799999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHH
Q 018040 82 ISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ 161 (362)
Q Consensus 82 ~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~ 161 (362)
+|+||+.+|.++++|+++..+...++..||..|.|+|+|++.+|.++.++||+||||+|+|||++||||++|||||||++
T Consensus 1105 ~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~ 1184 (1381)
T KOG0054|consen 1105 VSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLIL 1184 (1381)
T ss_pred hhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHH
Confidence 99999999999888855555555578899999999999999999998889999999999999999999999999999999
Q ss_pred HHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhcccc
Q 018040 162 TLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGK 241 (362)
Q Consensus 162 ~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 241 (362)
+|.|+.+|.+|+|.|||.||.+++++++|++++++||||.+|+||+|.||+|+.+++|+++|++|++++|.+.+..+|.+
T Consensus 1185 aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~ 1264 (1381)
T KOG0054|consen 1185 ALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGG 1264 (1381)
T ss_pred HHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVL 321 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~ 321 (362)
||+.+.|+|.|+|-||||.+||||||+++++||+|||+||++|++|...|++.|++..++||||.|+||++++.+||||+
T Consensus 1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVl 1344 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVL 1344 (1381)
T ss_pred CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 322 LLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 322 vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
|||+|+|+|+|+|.+|++++++.|.+++.+...
T Consensus 1345 Vld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~ 1377 (1381)
T KOG0054|consen 1345 VLDAGRVVEFDSPAELLSDKDSLFSSLLKEAAL 1377 (1381)
T ss_pred EeeCCeEeecCChHHHHhCCcchHHHHHHHHHH
Confidence 999999999999999999988889877766543
No 2
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-72 Score=565.20 Aligned_cols=312 Identities=28% Similarity=0.426 Sum_probs=286.0
Q ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEE
Q 018040 42 SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGL 121 (362)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 121 (362)
.+..|.++++.+..++.|...+...+..+...++++.+...|.+|++++++.+|.-+. . +...+. ...+.|+|+||
T Consensus 396 Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~--~-G~~~p~-~~~G~IeF~~V 471 (716)
T KOG0058|consen 396 LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPL--T-GTLAPD-HLQGVIEFEDV 471 (716)
T ss_pred hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCC--C-Cccccc-cccceEEEEEe
Confidence 3456888999998899999999999999999999999999999999999987664321 1 111111 35688999999
Q ss_pred EEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 122 QVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 122 ~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
+|.|+.. ..++|+|+||+|+|||++|+|||||+||||+.++|.++|+|++|+|.+||+||++++...+|++||+|.|+|
T Consensus 472 sFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 472 SFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred eeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 9999865 346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 201 TMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 201 ~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
.||++||+|||.++. ..+++++..+.+.++.++++..+|+|++|.+||+|.+||||||||+||||||++||.||||||+
T Consensus 552 vLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEA 631 (716)
T KOG0058|consen 552 VLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEA 631 (716)
T ss_pred eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEech
Confidence 999999999998864 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhhccC
Q 018040 280 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 357 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 357 (362)
||+||.+++..+++.|.+..+++|||+|+||+++++.||+|+|+++|+|+|.|+|+|+++++++.|+++++++.....
T Consensus 632 TSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~~ 709 (716)
T KOG0058|consen 632 TSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSGE 709 (716)
T ss_pred hhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcccCC
Confidence 999999999999999999888999999999999999999999999999999999999999988899999988765443
No 3
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-70 Score=616.33 Aligned_cols=350 Identities=43% Similarity=0.738 Sum_probs=312.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 3 LVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGV-----VDPAIAGLAVTFGLNLNMLQASLISKLCNL 77 (362)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (362)
.+|.++++++.....++|+.+++++++++++.+...+.+.. .+. ..++.+|.+++|...+...+.++...+..+
T Consensus 1121 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~ 1199 (1622)
T PLN03130 1121 SMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLA 1199 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999988876654444332221 221 125678889999988888899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHH
Q 018040 78 ENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKS 157 (362)
Q Consensus 78 ~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKS 157 (362)
+..+.|++|+.++++.++|.+...+...++..||..+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||
T Consensus 1200 e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1200 ENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999887764322222233446788889999999999976656799999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHh
Q 018040 158 TLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRK 237 (362)
Q Consensus 158 TLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~ 237 (362)
||+++|+|+++|++|+|.|||+|+.+++.+++|++|++|||+|.+|++|+|+||++..++++++++++++++++++++..
T Consensus 1280 TLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1280 SMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred ccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhc
Q 018040 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS 317 (362)
Q Consensus 238 ~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~ 317 (362)
+|.||||.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++.+|
T Consensus 1360 lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1360 NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 318 DMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 318 Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|||+||++|+|+|.|+|++|++++++.|++++.+..
T Consensus 1440 DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999876688999887544
No 4
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.3e-71 Score=571.79 Aligned_cols=340 Identities=31% Similarity=0.400 Sum_probs=298.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 8 SRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFII-SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVER 86 (362)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~R 86 (362)
.+..+.......|......++..+..+++++++. .+..+.++.+.+..+.++...+..++..++..+.++++...+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~r 445 (709)
T COG2274 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALER 445 (709)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555444444432 345678888877777777788999999999999999999999999
Q ss_pred HHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 87 ILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.++++.++|.+.. ......++..+.|+++||+|+|+.+.+++|+|+|++|++||++||||+||||||||+|+|+|+
T Consensus 446 L~dil~~~~E~~~~---~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 446 LGDILDTPPEQEGD---KTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred HHHHhcCCcccccc---cccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999988774421 111223345688999999999998877899999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhh
Q 018040 167 VEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESR 245 (362)
Q Consensus 167 ~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~ 245 (362)
|+|++|+|++||.|+.+++...+|++||||+||+.+|++|++||+.+... .+++++.++++.+++++++.++|.||+|.
T Consensus 523 y~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 523 YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999998654 56799999999999999999999999999
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++|+|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|.+...++|+|+||||+++++.||||+||++
T Consensus 603 v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~ 682 (709)
T COG2274 603 VGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ 682 (709)
T ss_pred cccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 326 GLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 326 G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
|+|+++|+|+|+++. ++.|.+++..
T Consensus 683 Gkiv~~gs~~ell~~-~g~y~~l~~~ 707 (709)
T COG2274 683 GKIVEQGSHEELLAQ-GGLYARLYQQ 707 (709)
T ss_pred CceeccCCHHHHHHh-cChHHHHHhc
Confidence 999999999999998 7788888764
No 5
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.2e-70 Score=614.69 Aligned_cols=348 Identities=42% Similarity=0.744 Sum_probs=315.3
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 2 KLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRI 81 (362)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
+.+|.+++++|.....++|+.+++++++.+++.++..+.+ ...+.++++.++++++|...+..++.+++..+.+++..+
T Consensus 1172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~ 1250 (1522)
T TIGR00957 1172 LKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNI 1250 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999987765443333222 235678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHH
Q 018040 82 ISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ 161 (362)
Q Consensus 82 ~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~ 161 (362)
+|++|+.++++.++|.+...+...++..||..+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||||++
T Consensus 1251 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~ 1330 (1522)
T TIGR00957 1251 VAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTL 1330 (1522)
T ss_pred HHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999998776543211222334468888899999999999876557999999999999999999999999999999
Q ss_pred HHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhcccc
Q 018040 162 TLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGK 241 (362)
Q Consensus 162 ~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 241 (362)
+|+|+++|++|+|.|||+|+.+++.+++|++|++|||+|.+|++|+|+||++..++++++++++++.+++++++..+|+|
T Consensus 1331 lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~G 1410 (1522)
T TIGR00957 1331 GLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDK 1410 (1522)
T ss_pred HHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVL 321 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~ 321 (362)
|||.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+
T Consensus 1411 Ldt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIl 1490 (1522)
T TIGR00957 1411 LDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVI 1490 (1522)
T ss_pred CCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 322 LLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 322 vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
||++|+|+|.|+|++|+++ ++.|++++++
T Consensus 1491 Vld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1491 VLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 9999999999999999987 5789998876
No 6
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-69 Score=607.13 Aligned_cols=351 Identities=41% Similarity=0.719 Sum_probs=309.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 3 LVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVV-----DPAIAGLAVTFGLNLNMLQASLISKLCNL 77 (362)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (362)
.+|.+.++.+......+|+.+++++++++++.+...+.+. ..+.+ .++.++++++|...+..++.++...+.++
T Consensus 1118 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~ 1196 (1495)
T PLN03232 1118 SMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKA 1196 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888899999999888776554443332222 12221 14566778888888888888899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHH
Q 018040 78 ENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKS 157 (362)
Q Consensus 78 ~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKS 157 (362)
+..+.|++|+.++++.++|.+...+...++..||..+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||
T Consensus 1197 ~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKS 1276 (1495)
T PLN03232 1197 ENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKS 1276 (1495)
T ss_pred HHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999887664321112223345787889999999999976556799999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHh
Q 018040 158 TLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRK 237 (362)
Q Consensus 158 TLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~ 237 (362)
||+++|+|+++|++|+|.|||+|+.+++.+++|++|+||||+|.+|++|+|+||++..++++++++++++.+++++++..
T Consensus 1277 TL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~ 1356 (1495)
T PLN03232 1277 SMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDR 1356 (1495)
T ss_pred HHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred ccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhc
Q 018040 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS 317 (362)
Q Consensus 238 ~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~ 317 (362)
+|.||||.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++.+|
T Consensus 1357 lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~ 1436 (1495)
T PLN03232 1357 NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDC 1436 (1495)
T ss_pred CcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 318 DMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 318 Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
|||+||++|+|+|.|+|+||++++++.|++++++...
T Consensus 1437 DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1437 DKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred CEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 9999999999999999999998866789999876543
No 7
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6e-68 Score=594.34 Aligned_cols=351 Identities=37% Similarity=0.597 Sum_probs=307.1
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 3 LVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFII---SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLEN 79 (362)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (362)
.+|.+.++++......+|+.++++++..++..+++++.+ ....+.++++.++++++|...+..++.+++..+..++.
T Consensus 1166 ~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~ 1245 (1560)
T PTZ00243 1166 RLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEA 1245 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888988999999999999887765443333222 11234467888888999998999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCCCcc-----------------------ccCCCC---CCCCCcccEEEEEEEEEeCCCCCce
Q 018040 80 RIISVERILQYMCI-PNEPPLVI-----------------------EASRPN---CSWPSQGEVDIHGLQVRYAPHLPLV 132 (362)
Q Consensus 80 ~~~s~~Rl~~~~~~-~~~~~~~~-----------------------~~~~~~---~~~~~~~~i~~~~l~~~y~~~~~~v 132 (362)
.+.|++|+.++++. ++|..... +...++ ..|+..+.|+|+||+|+|+++.+++
T Consensus 1246 ~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~v 1325 (1560)
T PTZ00243 1246 DMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLV 1325 (1560)
T ss_pred HHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCce
Confidence 99999999999863 32210000 000011 1233457899999999998765679
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcC
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 212 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~ 212 (362)
|+||||+|++||++||||+||||||||+++|+|+++|++|+|++||+|+.+++.+++|++|+||||+|.+|++|||+||+
T Consensus 1326 L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNId 1405 (1560)
T PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD 1405 (1560)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC-CCEEEEeCCCCCCCHHHHHHH
Q 018040 213 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK-SKVLVLDEATASVDTATDNLI 291 (362)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~-p~illLDEPts~LD~~~~~~i 291 (362)
+..++++++++++++.+++++++..+|.||||.++++|.+||||||||+||||||+++ |+|||||||||+||+++++.|
T Consensus 1406 p~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I 1485 (1560)
T PTZ00243 1406 PFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI 1485 (1560)
T ss_pred cccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH
Confidence 8878899999999999999999999999999999999999999999999999999996 899999999999999999999
Q ss_pred HHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 292 QHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 292 ~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+||++++++.|+++++...
T Consensus 1486 q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1486 QATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999888899999999999999999999999999999999999999876788999987654
No 8
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.2e-67 Score=544.97 Aligned_cols=304 Identities=32% Similarity=0.466 Sum_probs=276.8
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..+.++.+.+..++.|...+..++..+...+..++.+..+.+|+.++++.+++... .... .....+.|+++||+
T Consensus 261 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vs 335 (567)
T COG1132 261 VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVS 335 (567)
T ss_pred HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEE
Confidence 345667888888888888888888888999999999999999999999987543111 1110 12345679999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+++|++|+|++||+|+++++...+|++|+||||++.+
T Consensus 336 f~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 336 FSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred EEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee
Confidence 999853 3699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|+++||.++.+ .++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||
T Consensus 415 F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 99999999998865 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
+||+++++.+++.+.+..+++|+|+|+||++++..||+|+||++|+|+|.|+|+||+++ ++.|++++..+.
T Consensus 495 alD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 495 ALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred ccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 99999999999999977778899999999999999999999999999999999999998 789999998754
No 9
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.7e-67 Score=550.91 Aligned_cols=300 Identities=26% Similarity=0.374 Sum_probs=272.3
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..|.++.+.+..+..+...+..++..+...+.+++.+..+.+|+.++++.+++... .... ..+..+.|+++||+|
T Consensus 385 ~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~I~~~nvsf 459 (686)
T TIGR03797 385 GGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGAIEVDRVTF 459 (686)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCceEEEEEEEE
Confidence 46788888877777787888888888999999999999999999999987654321 1111 112345799999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+|++..+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+++.+++|++||||||++++|
T Consensus 460 ~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf 539 (686)
T TIGR03797 460 RYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM 539 (686)
T ss_pred EcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccC
Confidence 99765567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 204 EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 204 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
++|++||+.+..+.++++++++++.+++++++..+|.|++|.++++|.+||||||||++|||||+++|++||||||||+|
T Consensus 540 ~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~L 619 (686)
T TIGR03797 540 SGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSAL 619 (686)
T ss_pred cccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 99999999987668899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 284 DTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
|+.+++.+.+.+++. ++|+|+||||++.+..||+|++|++|+|++.|++++++++ ++.|++++..
T Consensus 620 D~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 620 DNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHh
Confidence 999999999999876 5899999999999999999999999999999999999986 6788888764
No 10
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.2e-67 Score=543.20 Aligned_cols=289 Identities=21% Similarity=0.345 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeE
Q 018040 59 FGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTC 138 (362)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl 138 (362)
+...+..++..+...+..++++..+.+|+.++++.+++... ........+..+.|+++||+|.|.++ +++|+|+||
T Consensus 296 l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l 371 (588)
T PRK11174 296 LAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ---QGEKELASNDPVTIEAEDLEILSPDG-KTLAGPLNF 371 (588)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCccccCCCCCceEEEEeeEEeccCC-CeeeeeeEE
Confidence 33455566777788888999999999999999986643211 01101111123469999999877654 469999999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC-CC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE-EY 217 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~-~~ 217 (362)
+|++||++||+||||||||||+++|+|++ |++|+|.+||+++.+++.+++|++|+||||+|++|++|++|||.+.. +.
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~ 450 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDA 450 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999874 58
Q ss_pred CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 018040 218 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297 (362)
Q Consensus 218 ~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~ 297 (362)
++++++++++.+++++++.++|+|++|.++|+|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.+.+
T Consensus 451 ~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 451 SDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred CHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 298 HFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 298 ~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
..+++|+|+||||++.+..||+|++|++|++++.|+|+|++++ ++.|++++..+.
T Consensus 531 ~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 531 ASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred HhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 8889999999999999999999999999999999999999987 568988887654
No 11
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.4e-67 Score=586.59 Aligned_cols=348 Identities=31% Similarity=0.577 Sum_probs=308.3
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 3 LVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRII 82 (362)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (362)
.+|.+++++|...+.++|+.+++++++.+++..++++.+.. ..+.++.+|.+++|...+...+.+++..+.+++..+.
T Consensus 1093 ~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~--~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~ 1170 (1490)
T TIGR01271 1093 ALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT--NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMR 1170 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999988765443333322221 2345667888888888888888888999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccc--------------cCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEE
Q 018040 83 SVERILQYMCIPNEPPLVIE--------------ASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGI 148 (362)
Q Consensus 83 s~~Rl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~i 148 (362)
|++|+.++++.++|.....+ ...++..||..+.|+|+||+|+|+++.+++|+|+||+|++||++||
T Consensus 1171 s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaI 1250 (1490)
T TIGR01271 1171 SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGL 1250 (1490)
T ss_pred HHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEE
Confidence 99999999987765331111 0112345888889999999999987666899999999999999999
Q ss_pred EcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHH
Q 018040 149 VGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDK 228 (362)
Q Consensus 149 vG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~ 228 (362)
||+||||||||+++|+|+++ ++|+|+|||+|+.+++.+.+|++|+||||+|.+|++|+|+||++...+++++++++++.
T Consensus 1251 vGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1251 LGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEE 1329 (1490)
T ss_pred ECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHH
Confidence 99999999999999999997 79999999999999999999999999999999999999999998888899999999999
Q ss_pred cCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEe
Q 018040 229 CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIA 308 (362)
Q Consensus 229 ~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~it 308 (362)
+++.+++..+|.|||+.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|||+||
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~Ia 1409 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSE 1409 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 309 HRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 309 H~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
||++++..||||+||++|+|+|.|+|++|+++ ++.|++++++...
T Consensus 1410 HRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1410 HRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred cCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 99999999999999999999999999999975 6789999876553
No 12
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.3e-66 Score=535.87 Aligned_cols=304 Identities=26% Similarity=0.385 Sum_probs=274.7
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..++++...+..++..+...+..++.+..+.+|+.++++.+++.+. .. ....+..+.++++||+
T Consensus 274 ~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~--~~~~~~~~~i~~~~vs 348 (582)
T PRK11176 274 SVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE---GK--RVIERAKGDIEFRNVT 348 (582)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC---CC--cCCCCCCCeEEEEEEE
Confidence 456788988888888888888888888999999999999999999999886544221 00 1111234569999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+++.+++|++|+||||++.+
T Consensus 349 f~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T PRK11176 349 FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428 (582)
T ss_pred EecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee
Confidence 99986555799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 203 FEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 203 ~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
|++|++|||.+.. ..++++++++++.++++++++++|.|+||.++++|.+||||||||++|||||+++|+++||||||
T Consensus 429 f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt 508 (582)
T PRK11176 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_pred ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 9999999998753 36899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
|+||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|++|++++.|+|++++++ ++.|++++..+
T Consensus 509 saLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHH
Confidence 999999999999999988778999999999999999999999999999999999999987 56899888754
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.6e-66 Score=546.87 Aligned_cols=304 Identities=26% Similarity=0.410 Sum_probs=272.1
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc--CCCCCC-CCCcccEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEA--SRPNCS-WPSQGEVDIH 119 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~i~~~ 119 (362)
+..|.++.+.+..++.+...+..++..+...+.+++++..+++|+.++++.+++....... ...... ++..+.|+++
T Consensus 402 v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~ 481 (710)
T TIGR03796 402 VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELR 481 (710)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEE
Confidence 4568888888888888888888888999999999999999999999999876553211100 000111 2234679999
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCC
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD 199 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 199 (362)
||+|+|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.+++|++|+||||+
T Consensus 482 ~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQD 561 (710)
T ss_pred EEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecC
Confidence 99999987556799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeC
Q 018040 200 PTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 278 (362)
Q Consensus 200 ~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDE 278 (362)
+++|++|++|||.+.. ..++++++++++.+++++++..+|.|++|.++++|.+||||||||++|||||+++|++|||||
T Consensus 562 ~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE 641 (710)
T TIGR03796 562 IFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE 641 (710)
T ss_pred ChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC
Confidence 9999999999998764 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHH
Q 018040 279 ATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 279 Pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 349 (362)
|||+||+++++.+.+.+++ .++|+|+||||++.+..||||++|++|+|++.|+|++++++ ++.|++++
T Consensus 642 ptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 642 ATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred ccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 9999999999999999976 48999999999999999999999999999999999999986 56787765
No 14
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-65 Score=532.45 Aligned_cols=305 Identities=28% Similarity=0.434 Sum_probs=276.9
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
...|.++.+.+..++.|...+..++..+...+..+++...+.+|+.++++.++++.. .. . .++..+.++++|++
T Consensus 274 ~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~--~-~~~~~~~i~~~~v~ 347 (592)
T PRK10790 274 SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND--D-RPLQSGRIDIDNVS 347 (592)
T ss_pred HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC--c-cCCCCCeEEEEEEE
Confidence 346778888888788888888888999999999999999999999999876543211 11 1 11234579999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++.+.+|++|+||||+|.+
T Consensus 348 f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l 426 (592)
T PRK10790 348 FAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426 (592)
T ss_pred EEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 999754 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 203 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 203 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
|++|+++||.+..+.++++++++++.++++++++++|+|+||.++++|.+||||||||++|||||+++|+++|||||||+
T Consensus 427 F~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~ 506 (592)
T PRK10790 427 LADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATAN 506 (592)
T ss_pred ccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 99999999998877889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhhc
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQR 355 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 355 (362)
||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++ ++.|++++......
T Consensus 507 LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 507 IDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHhhh
Confidence 9999999999999988778999999999999999999999999999999999999987 57899998866543
No 15
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.5e-65 Score=539.11 Aligned_cols=295 Identities=28% Similarity=0.417 Sum_probs=268.2
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..++++...+..++..+...+.+++....+++|+.++++.+++.+.. .......+..+.|+++||+
T Consensus 394 v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~---~~~~~~~~~~~~I~~~~vs 470 (694)
T TIGR03375 394 ISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG---TRFLHRPRLQGEIEFRNVS 470 (694)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCCCCCccceEEEEEEE
Confidence 3467888888888888888888889999999999999999999999999876553211 1101111234579999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|++..+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+++..++|++|+||||++++
T Consensus 471 f~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l 550 (694)
T TIGR03375 471 FAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL 550 (694)
T ss_pred EEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhh
Confidence 99986555799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++|||.+..+ .++++++++++.++++++++.+|.|++|.++++|.+||||||||++||||++++|+++|||||||
T Consensus 551 f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts 630 (694)
T TIGR03375 551 FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTS 630 (694)
T ss_pred hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 99999999998754 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|++|++++.|+|+|++++
T Consensus 631 ~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 631 AMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999988788999999999999999999999999999999999999865
No 16
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2e-65 Score=540.98 Aligned_cols=302 Identities=28% Similarity=0.384 Sum_probs=272.0
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..+..+...+..++..+...+..++.+..+++|+.++++.++|.+.. ......++..+.|+++||+
T Consensus 404 v~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~~~~~~~~~~I~~~~vs 480 (708)
T TIGR01193 404 VMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK---KKRTELNNLNGDIVINDVS 480 (708)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc---ccccCCCCCCCcEEEEEEE
Confidence 3578889888888888888888888899999999999999999999999876553211 1101112334679999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+++.+++|++|+||||++++
T Consensus 481 f~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 481 YSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred EEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee
Confidence 999754 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcC--CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 203 FEGSVHNNLDPL--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 203 ~~~tv~enl~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
|++|++|||.+. ...++++++++++.+++++++..+|.|++|.++++|.+||||||||++||||++++|++|||||||
T Consensus 560 f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~T 639 (708)
T TIGR01193 560 FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST 639 (708)
T ss_pred hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 999999999976 357889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
|+||+++++.+.+.+++. +++|+|+||||++.+..||+|++|++|++++.|+|++++++ ++.|+++++
T Consensus 640 s~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 640 SNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLIH 707 (708)
T ss_pred ccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHhh
Confidence 999999999999999875 67999999999999999999999999999999999999987 567887763
No 17
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-65 Score=506.51 Aligned_cols=327 Identities=26% Similarity=0.380 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhcC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 018040 23 FHIDMLSSIIFVFSLFFI-ISVPE-GVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLV 100 (362)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~ 100 (362)
..+|++.++.+++++++. +.+.. |.++-.....++..+.-|..++..+...+..-.+..++.+++..|++.+.+....
T Consensus 228 ~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~ 307 (559)
T COG4988 228 AVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGS 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCC
Confidence 567888777666655433 33333 5565443333444555677777778888888888899999999999866543221
Q ss_pred cccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 101 IEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 101 ~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
. ......+....+++.+|++|+|+++. ++++|+||++++|+.++|||+||||||||+++|+|+++|++|+|.+||++
T Consensus 308 ~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~ 384 (559)
T COG4988 308 G--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGID 384 (559)
T ss_pred c--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcc
Confidence 1 11112222233566669999998765 69999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 181 ISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 181 i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+.+++.+.||++++||+|+|++|++|++||+.+.+. .++++++++++.+++.++++. |.|+|+.++|+|..|||||+|
T Consensus 385 l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~Q 463 (559)
T COG4988 385 LRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQ 463 (559)
T ss_pred ccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHH
Confidence 999999999999999999999999999999998765 779999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
||++||||+++++++|||||||+||.++++.|.+.|.+..+++|+|+||||+..+..||+|+||++|++++.|+|+++.+
T Consensus 464 RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCcHHHHHHHHHhh
Q 018040 340 NKSSSFAQLVAEYTQ 354 (362)
Q Consensus 340 ~~~~~~~~~~~~~~~ 354 (362)
+ .+.|++++.++..
T Consensus 544 ~-~~~y~~l~~~q~~ 557 (559)
T COG4988 544 K-QGLYANLLKQQEG 557 (559)
T ss_pred c-CcHHHHHHHHHhc
Confidence 7 6789999987654
No 18
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.8e-65 Score=539.26 Aligned_cols=299 Identities=27% Similarity=0.429 Sum_probs=267.6
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..++.|...+..++..+...+.+++++..+.+|+.++++.+++.+. .. ....++..+.|+++||+
T Consensus 410 v~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~-~~~~~~~~~~I~~~nVs 485 (711)
T TIGR00958 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL---TG-TLAPLNLEGLIEFQDVS 485 (711)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC---CC-CCCCCCCCCeEEEEEEE
Confidence 356888988888888888888889999999999999999999999999986554221 11 11112335679999999
Q ss_pred EEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 123 VRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 123 ~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
|+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+.+|++|+||||+|+
T Consensus 486 f~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~ 565 (711)
T TIGR00958 486 FSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV 565 (711)
T ss_pred EECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc
Confidence 999753 3469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 202 MFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 202 l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
+|++|++|||.+.. ..++++++++++.++++++++++|+|+||.++++|.+||||||||++||||++++|+|+||||||
T Consensus 566 lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpT 645 (711)
T TIGR00958 566 LFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT 645 (711)
T ss_pred ccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccc
Confidence 99999999998764 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
|+||+++++.+.+ . ...+++|+|+||||++.+..||+|++|++|+|++.|+|+|++++ ++.|+++
T Consensus 646 SaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 646 SALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-QGCYKHL 710 (711)
T ss_pred cccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC-CCchHhc
Confidence 9999999999998 3 33468999999999999999999999999999999999999987 4577765
No 19
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-65 Score=543.02 Aligned_cols=307 Identities=26% Similarity=0.387 Sum_probs=266.4
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..+.+++..+...+.....-............++..+..|+.+++++++.++.-+...+ ......+..|.|+++||+
T Consensus 917 i~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~--~~~~~~~~~G~I~~~~V~ 994 (1228)
T KOG0055|consen 917 ISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDST--SGGKLPNVKGDIEFRNVS 994 (1228)
T ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCccccceeEEEEeeeE
Confidence 356777776655443333222233344455566788999999999999987653221111 111112346889999999
Q ss_pred EEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 123 VRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 123 ~~y~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
|+||... .++|+|+||+|++|+.+||||||||||||.+.+|-++|+|++|.|.|||.|+++++++.+|+++|.|.|+|.
T Consensus 995 F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~ 1074 (1228)
T KOG0055|consen 995 FAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074 (1228)
T ss_pred eeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch
Confidence 9998542 368999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcC-CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 202 MFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 202 l~~~tv~enl~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
||++|++|||.++ .+.+.+++.++++.++.++++..+|+||||.+||+|.+||||||||+|||||+++||+||||||+|
T Consensus 1075 LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEAT 1154 (1228)
T KOG0055|consen 1075 LFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEAT 1154 (1228)
T ss_pred hhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccc
Confidence 9999999999988 346899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
|+||.++++.++++|++...++|.|+|+||++++++||.|+|+++|+|+|.|+|++|++. ++.|.++++.+
T Consensus 1155 SALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~-~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1155 SALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK-RGIYFRLVQLQ 1225 (1228)
T ss_pred hhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhC-CCchHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999995 78899988754
No 20
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-66 Score=503.33 Aligned_cols=336 Identities=24% Similarity=0.377 Sum_probs=281.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 018040 9 RPKFHIAAAMQWLCFHIDMLSSIIFV-FSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLI-SKLCNLENRIISVER 86 (362)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~R 86 (362)
+..........|-.+.+.++..+.++ ..+++......|..+...+.+++..++...+.+..+. .++.++.+...|+.|
T Consensus 233 ~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~R 312 (573)
T COG4987 233 KAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARR 312 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHH
Confidence 33444455566666666666665544 2233333345566553333333333344444455555 778899999999999
Q ss_pred HHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 87 ILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.+..+.+++.... ......+ ...++++||+|+|++.++++|+|+||++++||++||+|+||||||||+++|.|.
T Consensus 313 l~~i~~q~~e~~~~----~~~~~~~-~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~ 387 (573)
T COG4987 313 LNDILDQKPEVTFP----DEQTATT-GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA 387 (573)
T ss_pred HhhhccCCcccCCC----ccccCCc-cceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 99998766543211 0111111 126999999999999888899999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhh
Q 018040 167 VEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESR 245 (362)
Q Consensus 167 ~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~ 245 (362)
++|++|+|.++|.++..++.+++|+.|++++|.+++|++|+|+|+...+ +.+||+++++++++++++.+...|+||+|+
T Consensus 388 ~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~ 467 (573)
T COG4987 388 WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTW 467 (573)
T ss_pred cCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhch
Confidence 9999999999999999999999999999999999999999999998754 578999999999999999999999999999
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++|.|..||||||||++|||+|++|++++||||||.|||+.|++++++.+.+..++||+|+||||+..++.||||+||++
T Consensus 468 lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~ 547 (573)
T COG4987 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDN 547 (573)
T ss_pred hccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCCcHHHHHHH
Q 018040 326 GLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 326 G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
|++++.|+|++++.+ ++.|.++++
T Consensus 548 Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 548 GKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred CeeeecCCHHhhhcc-ccHHHHHhc
Confidence 999999999999986 678888765
No 21
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.5e-65 Score=523.84 Aligned_cols=300 Identities=27% Similarity=0.382 Sum_probs=262.4
Q ss_pred CCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFG-LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
.+.++.+....++.|. .....++..+...+..++++..+.+|+.++++.+++.... .... ..+..+.|+++||+|
T Consensus 271 ~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--~~~~--~~~~~~~i~~~~v~f 346 (574)
T PRK11160 271 GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP--TTST--AAADQVSLTLNNVSF 346 (574)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccC--CCCCCCeEEEEEEEE
Confidence 4556655544444443 3334556667778889999999999999999866542110 0111 112345799999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+++.+++|++|+||||++++|
T Consensus 347 ~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 426 (574)
T PRK11160 347 TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF 426 (574)
T ss_pred ECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhh
Confidence 99765446999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
++|++||+.+.. ..++++++++++.++++++++. |+|+||.++++|.+||||||||++||||++++|++||||||||+
T Consensus 427 ~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~ 505 (574)
T PRK11160 427 SATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEG 505 (574)
T ss_pred cccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999998764 4688999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|++|++++.|+|+|++++ ++.|+++++
T Consensus 506 lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 506 LDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHh
Confidence 9999999999999988788999999999999999999999999999999999999987 678888875
No 22
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-66 Score=500.95 Aligned_cols=305 Identities=27% Similarity=0.441 Sum_probs=279.7
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVR 124 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 124 (362)
.+.++.+...++.+|...+.+++.++...+..+|.+.+-+|+++++++.++|-. +....++-....|.|+|+||+|.
T Consensus 470 ~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVv---d~P~a~pl~~~~G~i~fsnvtF~ 546 (790)
T KOG0056|consen 470 EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVV---DLPGAPPLKVTQGKIEFSNVTFA 546 (790)
T ss_pred eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhh---cCCCCCCccccCCeEEEEEeEEe
Confidence 456677777889999999999999999999999999999999999997655421 11111111234678999999999
Q ss_pred eCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc
Q 018040 125 YAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204 (362)
Q Consensus 125 y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 204 (362)
|+++. ++|+||||++.||+.+|+|||||+||||++++|.++++..+|+|.|||+||+......+|+.||+||||..||+
T Consensus 547 Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN 625 (790)
T KOG0056|consen 547 YDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN 625 (790)
T ss_pred cCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec
Confidence 98764 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 205 GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 205 ~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
.|+..||.+.+ ..++|++.++.+.+++++.+...|+|++|.+||+|-.|||||||||||||+++++|.|++|||+||+|
T Consensus 626 dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSAL 705 (790)
T KOG0056|consen 626 DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSAL 705 (790)
T ss_pred ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhc
Confidence 99999999875 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 284 DTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|..+++.|+..+.+...++|.|+|+||++++-+||.|+|+++|+|+|.|.|+|++.+.++.|++|++.+.
T Consensus 706 DT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 706 DTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred CCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHH
Confidence 9999999999999998999999999999999999999999999999999999999998999999996544
No 23
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-64 Score=496.02 Aligned_cols=301 Identities=28% Similarity=0.429 Sum_probs=265.2
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVR 124 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 124 (362)
.+.++.+...+..++...+..++..+...+..+.+++.-+.-++...+.... . ...+.+.....+.|+|+||+|.
T Consensus 286 ~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~---i--~~~~~~i~~~~~~I~F~dV~f~ 360 (591)
T KOG0057|consen 286 AGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDED---I--QEAALPIELFGGSIEFDDVHFS 360 (591)
T ss_pred hccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh---h--hhccCCcccCCCcEEEEeeEEE
Confidence 4456666666677777888888888888888888888877776655432111 0 1111111234567999999999
Q ss_pred eCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc
Q 018040 125 YAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204 (362)
Q Consensus 125 y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 204 (362)
|+++. ++|+++||+|++||++||+|+|||||||++|+|+++++ ++|+|+|||+++++++++.+|+.|||||||..||+
T Consensus 361 y~~k~-~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn 438 (591)
T KOG0057|consen 361 YGPKR-KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN 438 (591)
T ss_pred eCCCC-ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccc
Confidence 98764 59999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 205 GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 205 ~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
+||.+||.++. ..+++++.++++++++++.+.++|+|+.|.+||+|..|||||||||+||||+++||+|+++|||||+|
T Consensus 439 dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~L 518 (591)
T KOG0057|consen 439 DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSAL 518 (591)
T ss_pred hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCccccc
Confidence 99999999875 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 284 DTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|.++++.+.+.+.....++|+|+|.||+++++.||+|++|++|++.+.|+|+|++. +++.|.+++..+.
T Consensus 519 D~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 519 DSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred chhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 99999999999998778999999999999999999999999999999999999999 5778888776443
No 24
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.6e-64 Score=519.44 Aligned_cols=305 Identities=28% Similarity=0.398 Sum_probs=275.1
Q ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEE
Q 018040 42 SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGL 121 (362)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 121 (362)
.+..|.++++.+..+.++...+..++..+...+..++++..+.+|+.++++.+++.+. ..... .+..+.++++||
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~--~~~~~~i~~~~v 336 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAI--ERARGDVEFRNV 336 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCC--CCCCCeEEEEEE
Confidence 3456888998888888888888899999999999999999999999999976554221 11111 123457999999
Q ss_pred EEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 122 QVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 122 ~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
+|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+++.+++.+++|++++|+||+|+
T Consensus 337 ~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~ 416 (571)
T TIGR02203 337 TFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV 416 (571)
T ss_pred EEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc
Confidence 99997654579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 202 MFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 202 l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
+|++|++||+.+.. +.++++++++++.+++++++.++|.|+||.++++|.+||||||||++||||++++|+++|||||
T Consensus 417 lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEp 496 (571)
T TIGR02203 417 LFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEA 496 (571)
T ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99999999998764 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 280 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
||+||+++++.+.+.|.+..+++|+|+|||+++.+..||+|++|++|++++.|++++++++ .+.|++++...
T Consensus 497 ts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 497 TSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHHHh
Confidence 9999999999999999988788999999999999988999999999999999999999876 56788876643
No 25
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8e-64 Score=557.50 Aligned_cols=309 Identities=28% Similarity=0.374 Sum_probs=263.9
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCC-CCCCCcccEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPN-CSWPSQGEVDIHGL 121 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l 121 (362)
+..|.++.+.+..++.+......+...+...+..++.+.++.+|+.++++.+++.+......... ......+.|+|+||
T Consensus 1092 v~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nV 1171 (1466)
T PTZ00265 1092 IRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDV 1171 (1466)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEE
Confidence 34677877765554444333333455567788899999999999999998654321100111000 01123467999999
Q ss_pred EEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------------------------------
Q 018040 122 QVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP------------------------------- 169 (362)
Q Consensus 122 ~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p------------------------------- 169 (362)
+|+|++. ..++|+|+||+|++|+++|||||||||||||+++|+|+|+|
T Consensus 1172 sF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 (1466)
T PTZ00265 1172 NFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVG 1251 (1466)
T ss_pred EEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccc
Confidence 9999753 23699999999999999999999999999999999999998
Q ss_pred -----------------------CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHH
Q 018040 170 -----------------------TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEA 225 (362)
Q Consensus 170 -----------------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~ 225 (362)
++|+|++||+|+.+++...+|++||||||+|.||++|++|||.+.. +.++++++++
T Consensus 1252 ~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A 1331 (1466)
T PTZ00265 1252 MKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRA 1331 (1466)
T ss_pred cccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHH
Confidence 6999999999999999999999999999999999999999999874 4789999999
Q ss_pred HHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCce
Q 018040 226 LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCT 303 (362)
Q Consensus 226 l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~t 303 (362)
++.+++++++..+|+||||.+|++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|.+.. +++|
T Consensus 1332 ~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~T 1411 (1466)
T PTZ00265 1332 CKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKT 1411 (1466)
T ss_pred HHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998873 6899
Q ss_pred EEEEecChhhhhhcCeEEEEeC----CEEE-EecChhHHhhcCCcHHHHHHHH
Q 018040 304 VITIAHRITSVIDSDMVLLLSY----GLIE-EFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 304 vi~itH~l~~~~~~Dri~vl~~----G~i~-~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
+|+||||+++++.||+|+||++ |+++ |.|+|+||+++.++.|++++..
T Consensus 1412 vIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1412 IITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred EEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhh
Confidence 9999999999999999999999 9955 8999999997546789988764
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.4e-63 Score=523.99 Aligned_cols=305 Identities=27% Similarity=0.387 Sum_probs=275.3
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++.+.+..+.++...+..++..+...+..++++..+++|+.++++.+++.... .... .....+.|+++||+
T Consensus 387 v~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~~-~~~~~~~i~~~~vs 462 (694)
T TIGR01846 387 VIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA---GLAA-LPELRGAITFENIR 462 (694)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC---CCCC-CCCCCCeEEEEEEE
Confidence 3467888888877888888888889999999999999999999999999876553211 1111 11224579999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+++.+++..++|++|+||||++.+
T Consensus 463 f~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l 542 (694)
T TIGR01846 463 FRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542 (694)
T ss_pred EEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee
Confidence 99976555699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++||+.+.. ..++++++++++.+++++++.++|.|++|.++++|.+||||||||++|||||+++|++||||||||
T Consensus 543 f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts 622 (694)
T TIGR01846 543 FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATS 622 (694)
T ss_pred hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 9999999998754 577899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
+||+.+++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|++++++++ ++.|++++..+
T Consensus 623 ~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 623 ALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 99999999999999988788999999999999999999999999999999999999987 57899887643
No 27
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.9e-63 Score=513.52 Aligned_cols=308 Identities=26% Similarity=0.358 Sum_probs=272.9
Q ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEE
Q 018040 42 SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGL 121 (362)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 121 (362)
.+..|.++++.+..++.+...+..++..+...+..+..+..+++|+.++++.+++.+.. ...... .+..+.|+++||
T Consensus 264 ~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~~-~~~~~~I~~~~v 340 (588)
T PRK13657 264 LVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAIDL-GRVKGAVEFDDV 340 (588)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCCc-CCCCCeEEEEEE
Confidence 34578889888888888888888888888888889999999999999998754332110 010011 112346999999
Q ss_pred EEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 122 QVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 122 ~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
+|+|++. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|++||.++.+++.+.+|++|+||||+|.
T Consensus 341 sf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 419 (588)
T PRK13657 341 SFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG 419 (588)
T ss_pred EEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc
Confidence 9999754 459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 202 MFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 202 l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
+|++|++||+.+.. +.++++++++++.+++.+++.++|.|+||.++++|.+||||||||++|||||+++|+++||||||
T Consensus 420 lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 420 LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999998764 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
|+||+.+++.+.+.+.+..+++|+|+||||++.++.||+|++|++|++++.|++++++++ .+.|.+++.+...
T Consensus 500 s~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 572 (588)
T PRK13657 500 SALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQGM 572 (588)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHhhc
Confidence 999999999999999887778999999999999989999999999999999999999876 5789998876543
No 28
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.7e-65 Score=537.13 Aligned_cols=306 Identities=26% Similarity=0.367 Sum_probs=265.2
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVR 124 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 124 (362)
.+..+++.+..++..++.-...+......+..+..+.++..++++.++..+.-....... .......+.|+|+||+|+
T Consensus 282 ~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~--~~~~~~~g~ief~nV~Fs 359 (1228)
T KOG0055|consen 282 NGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGG--RVLSSIKGEIEFRNVCFS 359 (1228)
T ss_pred cCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccC--CcccccccceEEEEEEec
Confidence 345555554443333333333334444556778889999999999987554322111111 111234678999999999
Q ss_pred eCCCC-CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 125 YAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 125 y~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
||... .++|+|+||+|++|+.+||||||||||||++++|.|+|+|++|+|++||.|+..++.+++|.+||.|.|+|.||
T Consensus 360 YPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF 439 (1228)
T KOG0055|consen 360 YPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF 439 (1228)
T ss_pred CCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhh
Confidence 98763 36999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
..|++|||.++. +.+.+++.++++.++.++++..+|.|++|.++|+|.+|||||||||||||||+++|+|||||||||+
T Consensus 440 ~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSa 519 (1228)
T KOG0055|consen 440 ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSA 519 (1228)
T ss_pred cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccc
Confidence 999999999876 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
||+++++.++++|++..+|+|.|+|+|||+++++||+|+||++|+|+|.|+|+||++.+ +.|.+++..+.
T Consensus 520 LD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 520 LDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred cCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999986 89999997664
No 29
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.3e-62 Score=508.34 Aligned_cols=306 Identities=27% Similarity=0.435 Sum_probs=271.9
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..+..+...+..++..+...+.++..+..+++|+.++++.+++.+... ......++..+.|+++||+
T Consensus 267 v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~ 344 (576)
T TIGR02204 267 VIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVN 344 (576)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEEEE
Confidence 35678888888778888888888888899999999999999999999987654321110 0111112234579999999
Q ss_pred EEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 123 VRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 123 ~~y~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
|+|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.+++..++|++++|+||+|+
T Consensus 345 f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~ 424 (576)
T TIGR02204 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV 424 (576)
T ss_pred EECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc
Confidence 9997532 469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 202 MFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 202 l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
+|++|++||+.+.. +.++++++++++.+++.++++.+|.|++|.++++|.+||||||||++||||++++|+++||||||
T Consensus 425 lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpt 504 (576)
T TIGR02204 425 LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504 (576)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcc
Confidence 99999999998754 46788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
|+||+.+++.+.+.+++..+++|+|+|||+++.+..||||++|++|++++.|+++++.++ ++.|++++..
T Consensus 505 s~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~~ 574 (576)
T TIGR02204 505 SALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARL 574 (576)
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHhh
Confidence 999999999999999988778999999999999988999999999999999999999876 6778887754
No 30
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3e-62 Score=504.91 Aligned_cols=305 Identities=26% Similarity=0.323 Sum_probs=272.4
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++.+.+..++.|...+..++..+...+..++.+..+.+|+.++++.+++... ..... .+..+.|+++|++
T Consensus 246 v~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~--~~~~~~I~~~~v~ 320 (569)
T PRK10789 246 VVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPV--PEGRGELDVNIRQ 320 (569)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCC--CCCCCcEEEEEEE
Confidence 346788888887777788888888888888999999999999999999876543211 10001 1123569999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++++|+||+|.+
T Consensus 321 ~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 321 FTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred EECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99986545699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++||+.+.. ..++++++++++.+++++++.++|.|++|.++++|.+||||||||++||||++++|+++|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 9999999998763 568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
+||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|++++++++ .+.|++++..+.
T Consensus 481 ~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 481 AVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 99999999999999987788999999999999989999999999999999999999876 567888887543
No 31
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.5e-61 Score=497.32 Aligned_cols=306 Identities=26% Similarity=0.352 Sum_probs=270.9
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..++.|...+..++..+...+..+..+..+++|+.++++.+++... ........+..+.++++|++
T Consensus 265 v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~v~ 341 (585)
T TIGR01192 265 VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADAPELPNVKGAVEFRHIT 341 (585)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccCCCCCCCCCeEEEEEEE
Confidence 356788888887788888888888888888889999999999999999875433211 11111111123469999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.+.+|+.++|+||++.+
T Consensus 342 ~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 342 FEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL 420 (585)
T ss_pred EECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 9997543 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++||+.+.. ..++++++++++.+++++++..+|.+++|.++++|.+||||||||++|||||+++|+++|||||||
T Consensus 421 f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts 500 (585)
T TIGR01192 421 FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATS 500 (585)
T ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999999998763 467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
+||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|++|++++.|++++++++ ++.|.+++....
T Consensus 501 ~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 501 ALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLRRSG 571 (585)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHHHHhCc
Confidence 99999999999999888778999999999999988999999999999999999999886 578988887654
No 32
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-62 Score=466.48 Aligned_cols=342 Identities=26% Similarity=0.419 Sum_probs=297.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 4 VDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRII 82 (362)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (362)
++++.++.........|+++....+.+......... ...+..+.++.+.....-++..++..++..+...+.++.++..
T Consensus 152 ~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~lt 231 (497)
T COG5265 152 LETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALT 231 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhh
Confidence 344455555555666666666665555433333221 2344567888888888889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccccCCCCCCCC-CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHH
Q 018040 83 SVERILQYMCIPNEPPLVIEASRPNCSWP-SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ 161 (362)
Q Consensus 83 s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~ 161 (362)
..+++++.++.+.+.. +....+.-|| ..+.+.|++|+|.|.+.. ++|+++||++++|+.+|+||++|+||||+++
T Consensus 232 dme~mfdLl~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~r 307 (497)
T COG5265 232 DMEKMFDLLDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILR 307 (497)
T ss_pred hHHHHHHhhccchhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHH
Confidence 9999999987665422 1112222342 346799999999998764 6999999999999999999999999999999
Q ss_pred HHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccc
Q 018040 162 TLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEG 240 (362)
Q Consensus 162 ~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~ 240 (362)
+|.++|++.+|.|.+||+|+.+.....+|+.||+||||..||+.|+..|+.+.++ .+++++..+++.+++++++..+|+
T Consensus 308 llfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~ 387 (497)
T COG5265 308 LLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPE 387 (497)
T ss_pred HHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCch
Confidence 9999999999999999999999999999999999999999999999999998754 678999999999999999999999
Q ss_pred cchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeE
Q 018040 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMV 320 (362)
Q Consensus 241 ~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri 320 (362)
|+++.+||+|-.|||||||||+|||+++++|+||+|||+||+||.++++.|+..|++..+++|.++|+||++++.+||.|
T Consensus 388 gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adei 467 (497)
T COG5265 388 GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEI 467 (497)
T ss_pred hhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 321 LLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 321 ~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
+||++|+|+|.|+|++|+.. ++.|++|+.
T Consensus 468 ivl~~g~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 468 IVLDNGRIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEeeCCEEEecCcHHHHHHc-CChHHHHhc
Confidence 99999999999999999998 789999874
No 33
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.7e-61 Score=493.04 Aligned_cols=291 Identities=22% Similarity=0.315 Sum_probs=261.8
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++++.+..++.+...+..++..+...+..++.+..+.+|+.++++.+++... .. .. .+..+.++++|++
T Consensus 250 ~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~--~~-~~~~~~i~~~~v~ 323 (544)
T TIGR01842 250 AIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AM--PL-PEPEGHLSVENVT 323 (544)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CC--CC-CCCCCeEEEEEEE
Confidence 346888988888888888888888888899999999999999999999976544211 00 11 1123569999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.+.+|+.++|+||+|++
T Consensus 324 ~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l 403 (544)
T TIGR01842 324 IVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVEL 403 (544)
T ss_pred EEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccc
Confidence 99976545699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++||+.+.. ..++++++++++.++++++++++|+|++|.++++|.+||||||||++||||++++|+++|||||||
T Consensus 404 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts 483 (544)
T TIGR01842 404 FPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNS 483 (544)
T ss_pred ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999998554 477899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhh
Q 018040 282 SVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+||+++++.+.+.+.+.. +++|+|+|||+++.+..||+|++|++|++++.|+++++.+
T Consensus 484 ~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 484 NLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred ccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999998874 5799999999999888899999999999999999999865
No 34
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.3e-61 Score=492.44 Aligned_cols=266 Identities=29% Similarity=0.448 Sum_probs=236.2
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..|.++.+.+..++.+...+..++..+...+..++++..+.+|+.++++.+++.+... .......++..+.|+++||+
T Consensus 263 ~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vs 341 (529)
T TIGR02868 263 VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLS 341 (529)
T ss_pred HhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEE
Confidence 34677888887777778878888888888889999999999999999997665422110 00011112234569999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.++ .+++|++|+||||+|++
T Consensus 342 f~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~l 419 (529)
T TIGR02868 342 FGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHL 419 (529)
T ss_pred EecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCccc
Confidence 9997653 599999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++|||.+.. +.++++++++++.+++++++.++|+|+||.++++|.+||||||||++||||++++|+|||||||||
T Consensus 420 F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TS 499 (529)
T TIGR02868 420 FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTE 499 (529)
T ss_pred ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999864 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecCh
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRI 311 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 311 (362)
+||+++++.+++.+.+..+++|+|+||||+
T Consensus 500 aLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 500 HLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999887899999999985
No 35
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.6e-60 Score=485.60 Aligned_cols=275 Identities=26% Similarity=0.420 Sum_probs=245.2
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..|.++.+.+..++.|...+..++..+...+..++.+..+.+|+.++++.+++.. ... ....+..+.|+++||+|
T Consensus 254 ~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~---~~~--~~~~~~~~~i~~~~v~f 328 (529)
T TIGR02857 254 LAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA---GKA--PVTAAPAPSLEFSGLSV 328 (529)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC---CCc--CCCCCCCCeEEEEEEEE
Confidence 3677888777777777777777788888889999999999999999997543211 111 11111234799999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.+++|++++||||+|++|
T Consensus 329 ~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf 408 (529)
T TIGR02857 329 AYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF 408 (529)
T ss_pred ECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc
Confidence 99875457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
++|++||+.+.. ..++++++++++.++++++++++|+|+||.++++|.+||||||||++||||++++|+++|||||||+
T Consensus 409 ~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~ 488 (529)
T TIGR02857 409 AGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAH 488 (529)
T ss_pred CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 999999998754 4678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEE
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|
T Consensus 489 lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 489 LDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999887889999999999999889999986
No 36
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-60 Score=417.36 Aligned_cols=217 Identities=27% Similarity=0.429 Sum_probs=193.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC-CHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI-GLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~-~~~~~r~~i 193 (362)
.|+++|++++|++. .+|+|||++|++||+++|+|||||||||||+||.||.+|++|+|.++|.++... +...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999865 599999999999999999999999999999999999999999999999877433 567889999
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
|+|||++.||+- |+.||+.... ..+ .+...+.|+++|+.+..+.+|. +||||||||||||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999975 9999996431 222 3445677888988877766654 5699999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
|||+.+|+++++|||||+|||+....+.+.++++. +|.|.|+|||++.++.. ||||++|++|+|++.|+|++++.++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999999875 57999999999999999 99999999999999999999999875
Q ss_pred cH
Q 018040 343 SS 344 (362)
Q Consensus 343 ~~ 344 (362)
..
T Consensus 229 ~~ 230 (240)
T COG1126 229 SE 230 (240)
T ss_pred CH
Confidence 44
No 37
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.1e-58 Score=448.04 Aligned_cols=291 Identities=25% Similarity=0.358 Sum_probs=257.4
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..++++++.+...-....-.-.++...+..|.++..+..|.+|+.+++...+.... ..+.+ ...+.+.++++++
T Consensus 269 i~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~-----~m~LP-~P~g~L~Ve~l~~ 342 (580)
T COG4618 269 IKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE-----RMPLP-APQGALSVERLTA 342 (580)
T ss_pred EcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC-----CCCCC-CCCceeeEeeeee
Confidence 46778776543322222233445667788999999999999999999976554221 11111 2357899999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
.-++.++++|+++||++.+||.+|||||||||||||.|+|.|.++|.+|.|++||-++.+++.+++-++|||+||+..||
T Consensus 343 ~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF 422 (580)
T COG4618 343 APPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF 422 (580)
T ss_pred cCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceec
Confidence 88887789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCc-CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDP-LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
+|||.|||.- ..+.+++.+.++.+.++.++.+.++|+||||.+|+.|..||||||||++|||||+.+|.+++||||-|+
T Consensus 423 ~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 423 DGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 9999999974 447888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 283 VDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||.+.|..+.+.|...+ +|.|+|+||||++.+..+|+|++|++|++..+|+.+|++++
T Consensus 503 LD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999998764 68999999999999999999999999999999999999865
No 38
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5e-57 Score=503.05 Aligned_cols=281 Identities=24% Similarity=0.392 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCC-CceeeeeeEEEeCCcEE
Q 018040 68 ASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKT 146 (362)
Q Consensus 68 ~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~-~~vL~~isl~i~~Ge~~ 146 (362)
..+...+..++.+..|++|+.++++.+++.+.. ... ...+....|+++||+|+|+... .++|+|+||+|++||++
T Consensus 339 ~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~~---~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 339 TIILPNITEYMKSLEATNSLYEIINRKPLVENN-DDG---KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCC---ccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 344556788999999999999999865542210 110 1112224799999999998532 36999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCccEEEE-CCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC----------
Q 018040 147 GIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-DGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---------- 215 (362)
Q Consensus 147 ~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---------- 215 (362)
||+||||||||||+++|+|+++|++|+|++ ||.++.+++...+|++||||+|+|.+|++|++||+.+..
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhc
Confidence 999999999999999999999999999999 579998888888999999999999999999999997631
Q ss_pred ------------------------------------------------CCCHHHHHHHHHHcCCChHHHhccccchhhhc
Q 018040 216 ------------------------------------------------EYADEEIWEALDKCQLGNEVRKNEGKLESRVT 247 (362)
Q Consensus 216 ------------------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~ 247 (362)
..++++++++++.+++++++..+|.+++|.++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 13467889999999999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeC
Q 018040 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++|.+||||||||++|||||+++|+|||||||||+||+.+++.+++.|++.. +++|+|+||||++++..||+|++|++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999875 47999999999999988999999998
Q ss_pred C-----------------------------------------------EEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 326 G-----------------------------------------------LIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 326 G-----------------------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
| +|+|+|+|+||++..++.|+.++..+
T Consensus 655 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 655 RERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 6 59999999999985578899988654
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-56 Score=500.38 Aligned_cols=291 Identities=21% Similarity=0.295 Sum_probs=253.8
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..+.++++.+..++++...+..++..++..+..+.++.+|++|+.++++.+++... ..++. .+..+.++++|++|
T Consensus 548 ~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~----~~~~~-~~~~~~I~~~~vsF 622 (1495)
T PLN03232 548 LGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA----QNPPL-QPGAPAISIKNGYF 622 (1495)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc----ccCCc-CCCCCcEEEEeeEE
Confidence 46778888888888888888888888899999999999999999999976543111 00111 11234699999999
Q ss_pred EeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 124 RYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 124 ~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+|++|+||+|+|++
T Consensus 623 ~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 623 SWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWI 690 (1495)
T ss_pred EcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCcccc
Confidence 99753 35699999999999999999999999999999999999999998763 246789999999999
Q ss_pred CcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 203 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 203 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
|++|++|||.+..++++++++++++.|++.++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+
T Consensus 691 f~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSa 770 (1495)
T PLN03232 691 FNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770 (1495)
T ss_pred ccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHH-HHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 283 VDTATDNLIQH-TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 283 LD~~~~~~i~~-~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
||+++++.+.+ ++....+++|+|+|||+++.+..||+|++|++|+|++.|++++++++ ++.|.+++...
T Consensus 771 LD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~l~~~~ 840 (1495)
T PLN03232 771 LDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLMENA 840 (1495)
T ss_pred cCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHHHHHhc
Confidence 99999987765 46555678999999999999999999999999999999999999875 56777776543
No 40
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=5.2e-56 Score=457.12 Aligned_cols=280 Identities=22% Similarity=0.249 Sum_probs=239.6
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc-c-CCCC---CCCCCcccEEEEE
Q 018040 46 GVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIE-A-SRPN---CSWPSQGEVDIHG 120 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~-~-~~~~---~~~~~~~~i~~~~ 120 (362)
+.++.+.+..++.|...+..++..+...+..++++..+++|+.++++.+++++...+ . .... ......+.|+++|
T Consensus 263 ~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (555)
T TIGR01194 263 ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKD 342 (555)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEE
Confidence 567888777788888888888999999999999999999999999763222111000 0 0000 0011235799999
Q ss_pred EEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 121 LQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 121 l~~~y~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
|+|+|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++..++|+.++||+
T Consensus 343 v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 422 (555)
T TIGR01194 343 VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIF 422 (555)
T ss_pred EEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEc
Confidence 99999753 235999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEe
Q 018040 198 QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 277 (362)
Q Consensus 198 Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLD 277 (362)
|++.+|++|+++|.. ...++++++++++.+++++++..+|+|++|. .+||||||||++||||++++|+++|||
T Consensus 423 q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 423 ADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred cChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999999963 3456788999999999999999999999884 789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH-hh-cCCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 278 EATASVDTATDNLIQHTLG-QH-FSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 278 EPts~LD~~~~~~i~~~l~-~~-~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
||||+||+++++.+.+.+. .. .+++|+|+||||++.+..||+|++|++|++++.-
T Consensus 496 E~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 496 EWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKDT 552 (555)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999988664 33 3589999999999998889999999999998753
No 41
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.7e-57 Score=424.89 Aligned_cols=236 Identities=35% Similarity=0.642 Sum_probs=219.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++..++...+|++|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 589999999997544569999999999999999999999999999999999998 7899999999998888888999999
Q ss_pred EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
|+||++.+|++|+++|+.+.....+++++++++.+++.+.++.+|.++++.++++|.+||||||||++||||++++|+|+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999765556678899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
||||||++||+.+++.+++.|++..+++|||+|||+++.+..||||++|++|++++.|+|++++++ .+.|++++.+.
T Consensus 161 llDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 237 (275)
T cd03289 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPS 237 (275)
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhc
Confidence 999999999999999999999987778999999999999988999999999999999999999986 46677777543
No 42
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.6e-56 Score=498.72 Aligned_cols=290 Identities=21% Similarity=0.291 Sum_probs=253.3
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..+.++++.+..++++...+..++..++..+..+.++.++++|+.++++.++.... .. ++. .+..+.|+++|++|
T Consensus 548 ~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~---~~-~~~-~~~~~~I~~~nvsf 622 (1622)
T PLN03130 548 LGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL---PN-PPL-EPGLPAISIKNGYF 622 (1622)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---cC-Ccc-cCCCCceEEEeeEE
Confidence 46778888887777777777788888888999999999999999999975433111 00 100 11234699999999
Q ss_pred EeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 124 RYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-GLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 124 ~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
+|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+ |++|+||+|+|+
T Consensus 623 ~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~ 689 (1622)
T PLN03130 623 SWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSW 689 (1622)
T ss_pred EccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccc
Confidence 99753 3469999999999999999999999999999999999999999 99974 457999999999
Q ss_pred CCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 202 MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 202 l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
+|++|++|||.++.++++++++++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||++++|+|+|||||||
T Consensus 690 LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptS 769 (1622)
T PLN03130 690 IFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769 (1622)
T ss_pred cCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH-HHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 282 SVDTATDNLIQ-HTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 282 ~LD~~~~~~i~-~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
+||+++++.+. ++++...+++|+|+|||+++.+..||+|++|++|+|++.|++++++++ .+.|.+++...
T Consensus 770 ALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~~l~~~~ 840 (1622)
T PLN03130 770 ALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQKLMENA 840 (1622)
T ss_pred ccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHHHHHHhc
Confidence 99999988775 566666678999999999999999999999999999999999999875 56677776543
No 43
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-57 Score=416.52 Aligned_cols=221 Identities=24% Similarity=0.371 Sum_probs=194.3
Q ss_pred cEEEEEEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HH
Q 018040 115 EVDIHGLQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~ 188 (362)
.|++++|++.|... ...+|+||||+|++||++||||+||||||||++++.+|..|++|+|.+||.++..++. +.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 37899999999862 2468999999999999999999999999999999999999999999999999887764 45
Q ss_pred HhcCcEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
.|++||+|||++.|++ .||.+|+.+.- ..+ ..++.+.++.+||.++.++. +.+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y-----------P~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY-----------PAQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC-----------chhcCcchhhH
Confidence 6789999999999997 59999998632 222 34566778888887665554 45679999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|+|||||+.+|+|||.|||||+|||++.+.|.++|++.. -|.||++|||.|+.++. ||||.||++|+|+|.|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999998864 47899999999999999 999999999999999999999
Q ss_pred hhcCCcHHH
Q 018040 338 LENKSSSFA 346 (362)
Q Consensus 338 ~~~~~~~~~ 346 (362)
+.+|.....
T Consensus 230 F~~Pk~~~t 238 (339)
T COG1135 230 FANPKHAIT 238 (339)
T ss_pred hcCcchHHH
Confidence 998754443
No 44
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-57 Score=406.99 Aligned_cols=221 Identities=26% Similarity=0.425 Sum_probs=196.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+|+|||++|++. .+++|+||+|++||+++++|||||||||+||+|.|+++|++|+|+|||+++++++..++|++||
T Consensus 1 MI~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 37899999999854 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||-|...||+. ||.|||.... ..+ ++++.+.++.++|.+. .+..+.+.+|||||+|||.+|||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------~~~~RyP~eLSGGQQQRVGv~RA 149 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------EYADRYPHELSGGQQQRVGVARA 149 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH---------HHhhcCchhcCcchhhHHHHHHH
Confidence 99999999975 9999997532 222 4566778888888631 12334456679999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++++||||+++|||.++..+++.+.+.. -++|||+||||++++.. +|||.+|++|+|+..++|++++.+|..
T Consensus 150 LAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan 229 (309)
T COG1125 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229 (309)
T ss_pred HhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccH
Confidence 999999999999999999999999999998754 37999999999999877 999999999999999999999999876
Q ss_pred HHH
Q 018040 344 SFA 346 (362)
Q Consensus 344 ~~~ 346 (362)
.|-
T Consensus 230 ~FV 232 (309)
T COG1125 230 DFV 232 (309)
T ss_pred HHH
Confidence 553
No 45
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-54 Score=465.81 Aligned_cols=311 Identities=21% Similarity=0.333 Sum_probs=262.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 018040 22 CFHIDMLSSIIFVFSLFFIIS-VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLV 100 (362)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~ 100 (362)
...+......++.++.+.... ...+.+++..+...+++...+..++..++..+..+.++.+|++|+.+|+..++..+..
T Consensus 427 ~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~ 506 (1381)
T KOG0054|consen 427 NSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDS 506 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccc
Confidence 333333444333333333333 3345677777778888888888888889999999999999999999999765432211
Q ss_pred cccCCCCCCCCCcccEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 018040 101 IEASRPNCSWPSQGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI 179 (362)
Q Consensus 101 ~~~~~~~~~~~~~~~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~ 179 (362)
.. . ....+....++++|.+|+|++. ..+.|+||||+|++|+.+||||+.||||||||.+|+|.++..+|+|.++|
T Consensus 507 ~~--~-~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g- 582 (1381)
T KOG0054|consen 507 VE--R-SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG- 582 (1381)
T ss_pred cc--c-CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-
Confidence 11 0 1122334569999999999863 33489999999999999999999999999999999999999999999998
Q ss_pred eCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 180 DISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 180 ~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.++||||.||++++||||||.|+.++++++++++++.|.|.++++.+|.|..|.+||+|.+|||||||
T Consensus 583 ------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKq 650 (1381)
T KOG0054|consen 583 ------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQ 650 (1381)
T ss_pred ------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHH-HHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLI-QHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i-~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
||+||||++++++|++||.|+|++|.++.+.+ .++++...++||+|+|||.++.+..||+|++|++|+|.+.|+++|++
T Consensus 651 RIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 651 RISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHH
Confidence 99999999999999999999999999987766 45565667889999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHH
Q 018040 339 ENKSSSFAQLV 349 (362)
Q Consensus 339 ~~~~~~~~~~~ 349 (362)
+. +..|.++.
T Consensus 731 ~~-~~~~~~l~ 740 (1381)
T KOG0054|consen 731 KS-GGDFAELA 740 (1381)
T ss_pred hc-chhHHHHh
Confidence 75 56677664
No 46
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-56 Score=389.32 Aligned_cols=221 Identities=26% Similarity=0.420 Sum_probs=199.9
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-----cEEEECCEeCCCC--CH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-----GLIAIDGIDISSI--GL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-----G~I~i~g~~i~~~--~~ 186 (362)
..++++||++.|+.. .+|+|||++|++++++|++|||||||||||+++.++.+... |+|.++|++|.+. +.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 358999999999865 59999999999999999999999999999999999998765 9999999999764 57
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCCC-------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.++|++||+|||.|..|+.|++||+.++.+ .-++.++++|+.+.||+.+.. .+++.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 789999999999999999999999987432 124567888999999876543 456678889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|+||||||+.+|++||||||||+|||.+...|.+++.+++++-|||+|||++..+.+ +|+..++..|+++|.|+.++++
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999888999999999999998 9999999999999999999999
Q ss_pred hcCCc
Q 018040 339 ENKSS 343 (362)
Q Consensus 339 ~~~~~ 343 (362)
.+|..
T Consensus 237 ~~P~~ 241 (253)
T COG1117 237 TNPKH 241 (253)
T ss_pred cCccH
Confidence 98753
No 47
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.5e-53 Score=438.30 Aligned_cols=262 Identities=19% Similarity=0.241 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeee
Q 018040 56 AVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRG 135 (362)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~ 135 (362)
+..+...+..++..+...+..++.+..+.+|+.++++.+++++. . ...+ .+..+.++++|++|+|+++ +++|+|
T Consensus 268 ~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~-~~~~--~~~~~~i~~~~v~f~y~~~-~~~l~~ 341 (547)
T PRK10522 268 YSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--P-RPQA--FPDWQTLELRNVTFAYQDN-GFSVGP 341 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--c-cccc--cCcCceEEEEEEEEEeCCC-CeEEec
Confidence 33333445566777788888999999999999998754432211 0 1111 1112469999999999754 359999
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE 215 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~ 215 (362)
+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++++||||++.+|++|+++| ..
T Consensus 342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~ 418 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GK 418 (547)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 23
Q ss_pred CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 018040 216 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL 295 (362)
Q Consensus 216 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l 295 (362)
..++++++++++.+++.+.+.. +++. .+|.+||||||||++||||++++|++||||||||+||+++++.+.+.+
T Consensus 419 ~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l 492 (547)
T PRK10522 419 PANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL 492 (547)
T ss_pred chHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 4567788888998888765542 2221 147899999999999999999999999999999999999999999988
Q ss_pred Hhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 296 GQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 296 ~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
.+.. +++|+|+||||++.+..||+|++|++|++++..
T Consensus 493 ~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 493 LPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 7543 479999999999998889999999999999873
No 48
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.3e-55 Score=400.80 Aligned_cols=213 Identities=29% Similarity=0.431 Sum_probs=189.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|++||+++.+++..++.+++|
T Consensus 2 ~L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 48899999999854 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CcccHHhhcCcCC--------C---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTM-FEGSVHNNLDPLE--------E---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l-~~~tv~enl~~~~--------~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
||||.+.. +..||+|-+.+++ . .+.+.+.++++.+++.++.++. ..+||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 99999754 4559988775321 1 1233577889999887765543 3457999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+++|++|+|||||++||..++.++++.++++. +++|+|+|+||++.+.+ ||++++|++|+++..|+|++++.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999865 47999999999999887 99999999999999999999987
Q ss_pred c
Q 018040 340 N 340 (362)
Q Consensus 340 ~ 340 (362)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 5
No 49
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-54 Score=414.22 Aligned_cols=228 Identities=24% Similarity=0.383 Sum_probs=200.0
Q ss_pred CCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC
Q 018040 109 SWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS 183 (362)
Q Consensus 109 ~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~ 183 (362)
.||..+.|+++|++++|.+..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 477788999999999997544569999999999999999999999999999999999996 579999999999863
Q ss_pred --CCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CCCHHH-----HHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 184 --IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EYADEE-----IWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 184 --~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~~~~~-----~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
.+...+|+.++|+||+|++|++|+++|+.+.. ...+++ +..+++.+++.+ ++++.+++++.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccC
Confidence 34456788999999999999999999998532 122222 455677777643 3457788999999
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
|||||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++++.. ||||++|++|+|++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988778999999999999988 9999999999999999
Q ss_pred ChhHHhhcCCc
Q 018040 333 SPTRLLENKSS 343 (362)
Q Consensus 333 ~~~~l~~~~~~ 343 (362)
++++++..+..
T Consensus 307 ~~~~l~~~~~~ 317 (329)
T PRK14257 307 ETKTIFIHPKN 317 (329)
T ss_pred CHHHHhcCCCc
Confidence 99999886543
No 50
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.3e-54 Score=383.47 Aligned_cols=223 Identities=26% Similarity=0.420 Sum_probs=193.9
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLR 190 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 190 (362)
..|++++|+++|++. .+++||||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.++.+.+.+ ++|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 369999999999865 599999999999999999999999999999999999999999999999999888764 468
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcC----CCCCHHHHH----HHHHHcCCChH-HHhccccchhhhccCCCCCChhHHHH
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPL----EEYADEEIW----EALDKCQLGNE-VRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~----~~~~~~~~~----~~l~~~~l~~~-~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
+++|++||+..||+. ||+||+.+. ....+..++ .-++.+||... .+.+ +.+|||||++|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----------PsELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----------PSELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----------chhhcchHHHH
Confidence 899999999999975 999999863 223444433 34667777665 3433 45579999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
++||||++.||+|+++||||+||||.+...+.++++++.+ +.|+++||||++.+.. ||||+++.+|+|+..|+++++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987653 7899999999999998 999999999999999999999
Q ss_pred hhcCCcHHHHHH
Q 018040 338 LENKSSSFAQLV 349 (362)
Q Consensus 338 ~~~~~~~~~~~~ 349 (362)
.+.++...++++
T Consensus 234 ~~sd~P~v~qf~ 245 (263)
T COG1127 234 LASDDPWVRQFF 245 (263)
T ss_pred HhCCCHHHHHHh
Confidence 987665555544
No 51
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.3e-52 Score=466.33 Aligned_cols=290 Identities=22% Similarity=0.336 Sum_probs=249.4
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEe
Q 018040 46 GVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRY 125 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y 125 (362)
+.++++.+..++++...+..++..++..+..+.++.+|.+|+.+|++.+++.+..... ........+.++++|++|+|
T Consensus 569 ~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~ 646 (1522)
T TIGR00957 569 NILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIER--RTIKPGEGNSITVHNATFTW 646 (1522)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc--cccCCCCCCcEEEEEeEEEc
Confidence 4566776666666666777788888999999999999999999999765432110000 00000112369999999999
Q ss_pred CCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc
Q 018040 126 APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG 205 (362)
Q Consensus 126 ~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 205 (362)
++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||||+|++|++
T Consensus 647 ~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 647 ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQND 713 (1522)
T ss_pred CCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCC
Confidence 76545699999999999999999999999999999999999999999999987 49999999999999
Q ss_pred cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 206 tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
|++||+.+....++++++++++.+++.+++..+|.|++|.++++|.+||||||||++||||++++|+++|||||||+||+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 99999998766777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh---hcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 286 ATDNLIQHTLGQ---HFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 286 ~~~~~i~~~l~~---~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
.+++.+.+.+.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++.++ .+.|.+++..
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~ 861 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAEFLRT 861 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-chhHHHHHHh
Confidence 999999998853 3467999999999999989999999999999999999999875 4567776653
No 52
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=6.7e-53 Score=389.34 Aligned_cols=233 Identities=29% Similarity=0.474 Sum_probs=207.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|+...+++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999877776677888999
Q ss_pred EcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
+||++.+|+.|+.+|+.+... .....+.+.++..++.+.+..++.++++.++.++.+|||||||||+|||||+.+|+++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999998899999976432 3345566677778888888888888888888999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHH
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 349 (362)
||||||++||+.+++.+.+.|++..+++|||++||+++.+..||++++|++|++++.|++++++++ .+.|..++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 999999999999999999999987678999999999999977999999999999999999999876 44555543
No 53
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.3e-52 Score=392.39 Aligned_cols=239 Identities=51% Similarity=0.806 Sum_probs=215.7
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 191 (362)
..+.++++|++++|++....+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35679999999999764346999999999999999999999999999999999999999999999999998877777888
Q ss_pred CcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 192 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
.++|++|++.+|+.|+++|+.+......+.++++++.+++.+.++.++.++++.+++.+.+||||||||++|||||+++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999764333455677888888998888888889999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
++|||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++.+.....|.+++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 9999999999999999999999998876789999999999999889999999999999999999998765556666553
No 54
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-53 Score=403.65 Aligned_cols=216 Identities=25% Similarity=0.407 Sum_probs=193.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++.. +++++||+|++||+++|+|||||||||||++|+||.+|++|+|+|+|.+++++++.+ |+||
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999998643 899999999999999999999999999999999999999999999999999988764 7899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+|||++.||+. ||++|+.|.-. ..++++.++++.+++.+.+++.| .+||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999975 99999987422 22566778888888776666555 4569999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+++|++++||||+|+||++.+..+...|+++.+ +.|+|.||||..++.. +|||.||++|+|.+.|+|.|+.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999987543 6899999999998887 999999999999999999999988765
Q ss_pred HH
Q 018040 344 SF 345 (362)
Q Consensus 344 ~~ 345 (362)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 55
No 55
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-53 Score=387.18 Aligned_cols=209 Identities=27% Similarity=0.385 Sum_probs=182.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.+...... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999865 49999999999999999999999999999999999999999999999987654321 46799
Q ss_pred EEcCCC---CCCcccHHhhcCcCC-----------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 195 IIPQDP---TMFEGSVHNNLDPLE-----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 195 ~v~Q~~---~l~~~tv~enl~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
||||.. +-|+.||+|-+.... ..+.+++.++|+++++.++.++.. .+|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i-----------~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI-----------GELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc-----------cccCcHHHHH
Confidence 999966 347789999875421 123478899999999887655433 4579999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|.|||||+++|++|+|||||+|+|+.++..+.++|++++ +|+||++||||++.+.. +|+|+.|+ ++++..|++++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 999999999999999999999999999999999999875 48999999999999987 99999995 6788999999997
Q ss_pred hc
Q 018040 339 EN 340 (362)
Q Consensus 339 ~~ 340 (362)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
No 56
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-52 Score=382.00 Aligned_cols=219 Identities=58% Similarity=0.958 Sum_probs=203.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 58999999999754446999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
|+||++.+++.|+++|+.+......+++.++++.+++.+.+.+++.++++.+++.+.+||+|||||++|||||+.+|+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999989999999876555667788889999999999998999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
||||||++||+.+++.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999998766789999999999998899999999999998875
No 57
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-53 Score=406.52 Aligned_cols=217 Identities=23% Similarity=0.370 Sum_probs=193.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++||+++|++ ..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++|+++..++++ +|.|
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 36999999999984 3699999999999999999999999999999999999999999999999999998875 5789
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCCC----CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
|+|||+..||+ .||++|+.|.-. .. .+++.++++.+++.++..+.|. +|||||+||||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 99999999996 599999987432 12 3477888999988776666554 5699999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||+.+|++||||||.|+||.+-+..++..+++.. .|.|.|+||||-+++.. +|||+||++|+|...|+|+|+...|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999999888753 47999999999988877 9999999999999999999999987
Q ss_pred CcHH
Q 018040 342 SSSF 345 (362)
Q Consensus 342 ~~~~ 345 (362)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 6555
No 58
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-52 Score=379.50 Aligned_cols=194 Identities=27% Similarity=0.367 Sum_probs=172.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++++++.|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999987 3699999999999999999999999999999999999999999999999987433 35799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCCC-------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEEY-------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.||+- ||++|+.+.-.. ..+.+.+.++.+||.++.++.|. +|||||||||+||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999986 999999764221 23467788999998877766654 569999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
|+.+|++|+||||+++||+.|+..+++.+.+.. .++||++||||++++-. +|||++|.++
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999998754 46999999999999887 9999999994
No 59
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.1e-52 Score=404.62 Aligned_cols=219 Identities=26% Similarity=0.380 Sum_probs=189.5
Q ss_pred EEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 018040 116 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 190 (362)
|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999998776543 57
Q ss_pred cCcEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
++|+|+||++.+|+ .|+++|+.+.. ... .+++.++++.+++.+..++ .+.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 78999999999986 59999997421 122 2446677888887665443 34568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++||||||||+||+.++..+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998643 7899999999999987 99999999999999999999987
Q ss_pred cCCcHH
Q 018040 340 NKSSSF 345 (362)
Q Consensus 340 ~~~~~~ 345 (362)
++...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 654444
No 60
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.3e-52 Score=376.22 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=174.6
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H-
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L- 189 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~- 189 (362)
++++|+++.|..+. ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.++|.++..++..+ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996542 35899999999999999999999999999999999999999999999999998887543 4
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCc---CCCC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDP---LEEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
|++||||||+..|++. |++||+.. .... ..+.....++.+|+.+... ...+.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 4569999999999875 99999973 1111 2344566677777765443 133556899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEE
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIE 329 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~ 329 (362)
||||||+.+|++++.||||++||.++.+.+++++.+.. .++|+|+||||...+..|||++.|++|++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999874 478999999999999999999999999954
No 61
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-52 Score=381.92 Aligned_cols=225 Identities=32% Similarity=0.483 Sum_probs=203.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543359999999999999999999999999999999999999999999999999877666677888999
Q ss_pred EcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
+||++.+|+.|++||+.+... ....++.+.++..++.+.++.++.++++..+.++.+||||||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998999999976432 3445566677778888888888878888888899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||||++||+.+++.+.+.|++..++.|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 999999999999999999999987778999999999999988999999999999999999998765
No 62
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-52 Score=374.23 Aligned_cols=227 Identities=27% Similarity=0.371 Sum_probs=191.1
Q ss_pred cEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhc
Q 018040 115 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~ 191 (362)
.++++|+++.|+.+. .++|++|||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999998653 14899999999999999999999999999999999999999999999998775543 235677
Q ss_pred CcEEEcCCCCC--Cc-ccHHhhcCc-CC----CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 192 RLSIIPQDPTM--FE-GSVHNNLDP-LE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 192 ~i~~v~Q~~~l--~~-~tv~enl~~-~~----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
.+-+|||||.- -+ .||++-|.- .. ....+++.++++.+|+.+. ++.+++.+|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~----------~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS----------FLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH----------HHhcCchhcChhHHHHHHH
Confidence 89999999953 23 377776631 11 1234558899999998643 3344556689999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||.-+|++||||||||+||...+..|++.+.+..+ +.|.|+||||+..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999988654 5699999999999999 999999999999999999999988
Q ss_pred CCcHHHHHHHH
Q 018040 341 KSSSFAQLVAE 351 (362)
Q Consensus 341 ~~~~~~~~~~~ 351 (362)
+...|.+.+.+
T Consensus 233 ~~h~ytr~Ll~ 243 (252)
T COG1124 233 PSHPYTRELLE 243 (252)
T ss_pred CccHHHHHHHH
Confidence 66677665543
No 63
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-51 Score=378.92 Aligned_cols=225 Identities=36% Similarity=0.566 Sum_probs=204.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999743 25999999999999999999999999999999999999999999999999987777677788899
Q ss_pred EEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|+||++.+|+.|+++|+.+... ....++.++++.+++.+..+.++.++++.++....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998899999976532 345567778888899888888888899889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+||||||++||+.+++.+.+.+++..+++|||++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999887668999999999999877999999999999999998887654
No 64
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-52 Score=371.11 Aligned_cols=221 Identities=24% Similarity=0.380 Sum_probs=189.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~r~ 191 (362)
.|+++||++.|+++ +.+|++|||+|++||+++|+|||||||||||++|.|+.+|++|+|.++|.++.... .+++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999755 46999999999999999999999999999999999999999999999999988776 556788
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcC------------CCCC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCCh
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPL------------EEYA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~------------~~~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSg 255 (362)
++||+||++.|.+. ||.+|+..+ .-.+ .....++|+++|+.+..- .+..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCCc
Confidence 99999999999865 999998431 1222 334556778887765443 34556899
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
||+|||+|||||+++|+|+|.|||+|+|||.+.+.+++.|++.. .|.|+|+..|+++.+.. ||||+-|++|+|+.+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999998754 57999999999999987 9999999999999999
Q ss_pred ChhHHhhcCCcHHHHHHH
Q 018040 333 SPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 333 ~~~~l~~~~~~~~~~~~~ 350 (362)
++.|+-+. .+.+.|.
T Consensus 231 ~~~el~~~---~~~~iYg 245 (258)
T COG3638 231 PASELTDE---ALDEIYG 245 (258)
T ss_pred ChhhhhHH---HHHHHhc
Confidence 99996332 3444443
No 65
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-51 Score=378.05 Aligned_cols=232 Identities=33% Similarity=0.544 Sum_probs=207.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 359999999999999999999999999999999999999999999999999987777777888999
Q ss_pred EcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
+||++.+|+.|+++|+.+.. ......+.+.++.+++.+.+..++.++++.+++++.+||||||||++|||||+++|+++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 23455567778888888888888888999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHH
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 349 (362)
||||||++||+.+.+.+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+++++..+ .+.+..++
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~ 233 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMW 233 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHH
Confidence 999999999999999999999887668899999999999978999999999999999999988765 44454443
No 66
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.7e-52 Score=361.94 Aligned_cols=207 Identities=25% Similarity=0.311 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~ 191 (362)
.|+|+||+++|++. +++|+||||+|++||++-|+||||||||||+|+|++..+|++|+|.++|.|+..+..+ -+|+
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 37899999999987 6799999999999999999999999999999999999999999999999999887654 4799
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC-------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE-------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
+||+||||..|... ||.||+.+.- ....+++.++|+.+||.+....+|.. |||||+|||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~-----------LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQ-----------LSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccc-----------cCchHHHHHHH
Confidence 99999999988754 9999997632 12356788899999999888877765 59999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||++.+|++||.||||.+|||.....|++++.+.. .|.||+++|||.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999865 58999999999999998 57899999999987654
No 67
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-52 Score=379.51 Aligned_cols=214 Identities=29% Similarity=0.445 Sum_probs=191.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC-CCCHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS-SIGLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~-~~~~~~~r~~i 193 (362)
.++++|++|+|++. .++|+++||+|++||+++|+|+||||||||+++++|+++|++|+|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58899999999876 57999999999999999999999999999999999999999999999999987 36677899999
Q ss_pred EEEcCCC--CCCcccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDP--TMFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~--~l~~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
|||+|+| .+|..||.+.+.|... .. ++++.++++.+++.+..++ .+.+||||||||||||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHhh
Confidence 9999999 6788899999987532 22 3556778888888765444 4456799999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
.+|+.+|++||||||||+||+..++.+.+.++++.+ ++|+|++|||++.+.. |||+++|++|+++.+|+|++++++
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999998753 4899999999999988 999999999999999999999876
No 68
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.7e-51 Score=372.79 Aligned_cols=218 Identities=32% Similarity=0.492 Sum_probs=195.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 48999999999753346999999999999999999999999999999999999999999999999987666666778899
Q ss_pred EEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|+||++.+|+.|+.||+.+... ...+++.+.++.+++.+.++..|.++++.+.....+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999888899999976432 345567788889999888888888999888888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
|||||||++||+.++..+.+.|++..+++|||++||+++.+..||++++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999876568999999999987669999999999998754
No 69
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-51 Score=378.42 Aligned_cols=212 Identities=27% Similarity=0.413 Sum_probs=182.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~~ 192 (362)
++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 4689999999753 59999999999999999999999999999999999999999999999999876653 456788
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
++|+||++.+|+. |+++|+.+.. ... .+++.++++.+++.+.. .....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 9999999998875 9999996531 112 23455667777765433 33445689999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||+.+|++|||||||++||+.+++.+.+.+++.. .++|||++||+++.+.. ||||++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999999998864 37899999999999887 999999999999999999998754
No 70
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=6.2e-51 Score=376.42 Aligned_cols=225 Identities=32% Similarity=0.571 Sum_probs=201.2
Q ss_pred EEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 116 VDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753 236999999999999999999999999999999999999999999999999987666666777899
Q ss_pred EEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|+||++.+++.|+++|+.+.. ....+++.+.++..++.+.+..++.++++.+...+.+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988889999997643 2334556667777888888888888888888889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887677999999999999878999999999999999999888765
No 71
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-51 Score=396.43 Aligned_cols=217 Identities=21% Similarity=0.355 Sum_probs=188.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++. +++||
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999422 3599999999999999999999999999999999999999999999999999877653 47899
Q ss_pred EEcCCCCCCc-ccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+ .||++|+.+... .. .+++.++++.+++.++.++. +.+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRK-----------PRELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999996 599999976321 22 24466778888876555444 45679999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++||||||||+||+.+++.+.+.|++..+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987643 7899999999998877 999999999999999999999887654
Q ss_pred HH
Q 018040 344 SF 345 (362)
Q Consensus 344 ~~ 345 (362)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 44
No 72
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-50 Score=366.70 Aligned_cols=207 Identities=58% Similarity=0.977 Sum_probs=182.4
Q ss_pred CCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH
Q 018040 110 WPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 110 ~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~ 189 (362)
||..+.++++|++++|+....++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 56667899999999997543469999999999999999999999999999999999999999999999999877777777
Q ss_pred hcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
++.++|+||++.+|+.|+++|+.+......+++.++++ +++++.+|||||+||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 88999999999999899999997654333333333332 245677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecCh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~ 334 (362)
+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987668999999999999877999999999999988764
No 73
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.8e-51 Score=374.58 Aligned_cols=211 Identities=30% Similarity=0.491 Sum_probs=181.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEECCEeCCCCC--HHH
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV-----EPTAGLIAIDGIDISSIG--LHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-----~p~~G~I~i~g~~i~~~~--~~~ 188 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4789999999753 5999999999999999999999999999999999999 999999999999987665 455
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCCC---C-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
++++++|+||++.+|..|++||+.+... . .++++.++++.+++.+.....+. +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 6788999999999887799999965211 1 12455677777777654433210 46789999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987544899999999999887 999999999999999987653
No 74
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-51 Score=379.26 Aligned_cols=216 Identities=25% Similarity=0.388 Sum_probs=189.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---eCCCCCHHHHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI---DISSIGLHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~---~i~~~~~~~~r~ 191 (362)
+|+++++++.|+.. .+++|||++|+.||.+|+.|||||||||||++|+|+..|++|.|.++|+ |.+... ...+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhc
Confidence 47889999999865 5899999999999999999999999999999999999999999999999 555433 2346
Q ss_pred CcEEEcCCCCCCc-ccHHhhcCcCCC---------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 192 RLSIIPQDPTMFE-GSVHNNLDPLEE---------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 192 ~i~~v~Q~~~l~~-~tv~enl~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+||||||++.+|+ .||.+||.|+-+ ..+.++.+.|+.++|...-++.| .+|||||||||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 7999999999985 699999988531 23456777888888876655554 56799999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
||||||+.+|++||||||+++||.+.++.+...|++.. -+.|+++||||.+++.. ||||++|++|+|...|+|+|++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999999999998854 37899999999999988 9999999999999999999999
Q ss_pred hcCCcHH
Q 018040 339 ENKSSSF 345 (362)
Q Consensus 339 ~~~~~~~ 345 (362)
..|.+.|
T Consensus 227 ~~P~s~f 233 (345)
T COG1118 227 DHPASRF 233 (345)
T ss_pred cCCCccc
Confidence 9887665
No 75
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.1e-49 Score=444.26 Aligned_cols=280 Identities=22% Similarity=0.351 Sum_probs=235.2
Q ss_pred cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeC
Q 018040 48 VDPAIAGLAVTFGLNLNMLQ-ASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYA 126 (362)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~ 126 (362)
.+++.+..++++...+..++ ..++..+..+.++.+|++||.+|+..++.... ... .....++++|++|.|+
T Consensus 332 ~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~-----~~~---~~~~~i~~~~~~f~~~ 403 (1490)
T TIGR01271 332 IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL-----EYN---LTTTEVEMVNVTASWD 403 (1490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-----ccc---CCCCceEEecceEecC
Confidence 45555554555555554444 35778888999999999999999976543210 000 1123488888888884
Q ss_pred CC--------------------------------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 018040 127 PH--------------------------------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174 (362)
Q Consensus 127 ~~--------------------------------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 174 (362)
.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i 483 (1490)
T TIGR01271 404 EGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI 483 (1490)
T ss_pred CccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 21 1358999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 175 AIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 175 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
.++| +|+|++|+|++|++|++|||.+...++.+++.++++.+++.+++..+|.+.+|.++++|.+||
T Consensus 484 ~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LS 550 (1490)
T TIGR01271 484 KHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLS 550 (1490)
T ss_pred EECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcC
Confidence 9988 499999999999999999999766666667788889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT-LGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
|||||||+||||++++|+++|||||||+||+.+++.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 551 gGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~ 630 (1490)
T TIGR01271 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGT 630 (1490)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999874 666667899999999999998899999999999999999
Q ss_pred hhHHhhcCCcHHHHHH
Q 018040 334 PTRLLENKSSSFAQLV 349 (362)
Q Consensus 334 ~~~l~~~~~~~~~~~~ 349 (362)
++++... +..|.+.+
T Consensus 631 ~~~l~~~-~~~~~~~~ 645 (1490)
T TIGR01271 631 FSELQAK-RPDFSSLL 645 (1490)
T ss_pred HHHHHhc-ChHHHHHH
Confidence 9999865 34565554
No 76
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-50 Score=393.22 Aligned_cols=217 Identities=25% Similarity=0.389 Sum_probs=189.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 5 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred cEEEEEeEEEEECCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 369999999999753 58999999999999999999999999999999999999999999999999987654 35789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+||||++.+|+. |++||+.+... .. .+++.++++.+++.+..+ +.+.+|||||||||+|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999999975 99999976321 12 345667778877755443 345668999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|++++++.++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988643 7899999999999877 99999999999999999999988776
Q ss_pred cHH
Q 018040 343 SSF 345 (362)
Q Consensus 343 ~~~ 345 (362)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 544
No 77
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.7e-50 Score=393.26 Aligned_cols=216 Identities=24% Similarity=0.378 Sum_probs=188.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.++
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 59999999999753 589999999999999999999999999999999999999999999999999876643 57899
Q ss_pred EEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+ .|++||+.+.. ..+ .+++.++++.+++.+..+ +.+.+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999996 59999997632 111 345667777777765444 4455689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|+++|||||||+||+.+++.+.+.|++..+ +.|+|+|||+++++.. ||||++|++|++++.|+++++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987643 7899999999999877 999999999999999999999987655
Q ss_pred HH
Q 018040 344 SF 345 (362)
Q Consensus 344 ~~ 345 (362)
.|
T Consensus 229 ~~ 230 (353)
T TIGR03265 229 PF 230 (353)
T ss_pred HH
Confidence 54
No 78
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-50 Score=373.20 Aligned_cols=222 Identities=25% Similarity=0.409 Sum_probs=191.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~r~ 191 (362)
.++++|+++.|++. ++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+...+|+
T Consensus 2 ~~~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGKK--QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECCE--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 47899999999753 59999999999999999999999999999999999984 68999999999998777667788
Q ss_pred CcEEEcCCCCCCcccHHhhcCcCC---C------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 192 RLSIIPQDPTMFEGSVHNNLDPLE---E------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~tv~enl~~~~---~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
.++|+||++.+|+.|+++|+.+.. . ..++++.++++.+++.+.+. ....+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHH
Confidence 899999999999899999996531 1 11234567788888765432 2345567889999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||||+++|+++||||||++||+.++..+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999887668999999999999876 9999999999999999999997654
Q ss_pred CcHH
Q 018040 342 SSSF 345 (362)
Q Consensus 342 ~~~~ 345 (362)
...+
T Consensus 233 ~~~~ 236 (246)
T PRK14269 233 KQEK 236 (246)
T ss_pred CcHH
Confidence 3333
No 79
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-50 Score=371.80 Aligned_cols=223 Identities=30% Similarity=0.489 Sum_probs=191.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 48999999999753 5999999999999999999999999999999999999999999999999987766667788899
Q ss_pred EEcCCCCCCcccHHhhcCcCCC---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
|+||++.+|+.|+++|+.+... ...+++.++++.+++.+. ...+.+.+||||||||++||||++.+|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998899999975321 123455667777776421 223456679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|++++++..+...+.+.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 230 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHH
Confidence 9999999999999999999999998764 37899999999999887 99999999999999999999987654455554
Q ss_pred H
Q 018040 349 V 349 (362)
Q Consensus 349 ~ 349 (362)
+
T Consensus 231 ~ 231 (241)
T PRK14250 231 F 231 (241)
T ss_pred H
Confidence 4
No 80
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-50 Score=391.58 Aligned_cols=220 Identities=24% Similarity=0.370 Sum_probs=187.4
Q ss_pred EEEEEEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 018040 116 VDIHGLQVRYAP--HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 190 (362)
Q Consensus 116 i~~~~l~~~y~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 190 (362)
|+++|++++|+. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2246999999999999999999999999999999999999999999999999998776543 47
Q ss_pred cCcEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
++|+|+||++.+|+ .|+++|+.+.. ... .+++.++++.+++.+..+ ..+.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 78999999999886 59999996531 122 234556777777654433 345668999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+++|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||||++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998864 37899999999999887 99999999999999999999987
Q ss_pred cCCcHHH
Q 018040 340 NKSSSFA 346 (362)
Q Consensus 340 ~~~~~~~ 346 (362)
.+...+.
T Consensus 231 ~~~~~~~ 237 (343)
T PRK11153 231 HPKHPLT 237 (343)
T ss_pred CCCcHHH
Confidence 6543343
No 81
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.6e-50 Score=389.23 Aligned_cols=216 Identities=23% Similarity=0.379 Sum_probs=187.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+. .+++++
T Consensus 2 ~L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 38899999999753 59999999999999999999999999999999999999999999999999976543 357899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+||++.+|+. |++||+.+... .. .+++.++++.+++.+..+ .++.+|||||||||+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 99999999974 99999975321 12 235566777777755443 345568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.+++.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|++++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988643 6899999999999887 99999999999999999999988
Q ss_pred cCCcHH
Q 018040 340 NKSSSF 345 (362)
Q Consensus 340 ~~~~~~ 345 (362)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 765444
No 82
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.9e-50 Score=385.26 Aligned_cols=213 Identities=25% Similarity=0.383 Sum_probs=184.0
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 6 ~~i~i~~l~k~~~~~--~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECCe--EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 369999999999753 5999999999999999999999999999999999999999999999999986543 3568889
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
||+||++.+++ .|++||+.+... .. .+++.++++.+++.+.. +....+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHHHHH
Confidence 99999999886 599999975321 12 23345666777665433 2334568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+++|++|||||||+|||+.+++.+.+.++++. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999865 47999999999999987 999999999999999999998654
No 83
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-50 Score=372.15 Aligned_cols=223 Identities=27% Similarity=0.397 Sum_probs=189.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~~ 187 (362)
.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 69999999999753 599999999999999999999999999999999999997 48999999998753 2334
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC----CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|++||+.+... .. ++.+.++++.+++.+.+ .......+.+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHHH
Confidence 56788999999999888899999975311 11 23456667777764322 22334567889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999877 9999999999999999999998
Q ss_pred hcCCcHHH
Q 018040 339 ENKSSSFA 346 (362)
Q Consensus 339 ~~~~~~~~ 346 (362)
+++...|.
T Consensus 238 ~~~~~~~~ 245 (254)
T PRK14273 238 FNPKNTKT 245 (254)
T ss_pred hCCCChHH
Confidence 76554443
No 84
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.1e-50 Score=390.83 Aligned_cols=217 Identities=23% Similarity=0.385 Sum_probs=188.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc--cEEEECCEeCCCCCHHHHhc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA--GLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~--G~I~i~g~~i~~~~~~~~r~ 191 (362)
+.++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+. .++
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 469999999999753 59999999999999999999999999999999999999999 999999999976654 357
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
.|+||||++.+|+. |+++|+.+.. ... .+++.++++.+++.+..++. +.+|||||||||+|
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRvaL 148 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL-----------PAQLSGGMQQRIAI 148 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC-----------hhhCCHHHHHHHHH
Confidence 89999999999965 9999997531 122 23466777777776554444 45679999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC---CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS---DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
||||+.+|++|||||||++||+.++..+.+.|++..+ +.|+|+|||+++++.. ||||++|++|++++.|++++++.
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999987543 6899999999999877 99999999999999999999998
Q ss_pred cCCcHH
Q 018040 340 NKSSSF 345 (362)
Q Consensus 340 ~~~~~~ 345 (362)
++...|
T Consensus 229 ~p~~~~ 234 (362)
T TIGR03258 229 APADGF 234 (362)
T ss_pred CcCcHH
Confidence 765444
No 85
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-50 Score=371.92 Aligned_cols=219 Identities=25% Similarity=0.425 Sum_probs=187.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~~ 187 (362)
.|+++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 59999999999753 59999999999999999999999999999999999974 589999999999864 2344
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+.. .. ..+++.++++.+++.+.+. ..+++.+.+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHHH
Confidence 5678899999999998889999996421 11 1344566777777754322 2345667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|++|||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999976 9999999999999999999997
Q ss_pred hcCC
Q 018040 339 ENKS 342 (362)
Q Consensus 339 ~~~~ 342 (362)
+.+.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 6543
No 86
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-50 Score=369.17 Aligned_cols=213 Identities=23% Similarity=0.374 Sum_probs=181.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 2 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGDF--VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECCE--EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 37899999999753 59999999999999999999999999999999999999999999999999865442 256799
Q ss_pred EEcCCCCCCc-ccHHhhcCcCCC---C----C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLEE---Y----A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~~---~----~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+||++.+|+ .|+++|+.+... . . .+++.++++.+++.+.. +..+.+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999886 599999975311 1 1 12345566666664433 3345678999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.+++.+.+.|.+.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999999999998864 37899999999998877 99999999999999999999876
Q ss_pred cCC
Q 018040 340 NKS 342 (362)
Q Consensus 340 ~~~ 342 (362)
.+.
T Consensus 227 ~~~ 229 (239)
T cd03296 227 HPA 229 (239)
T ss_pred CCC
Confidence 543
No 87
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-50 Score=378.96 Aligned_cols=215 Identities=26% Similarity=0.384 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 23599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCC--CCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPT--MFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~--l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++. ++..|+++|+.+.. ... .+++.++++.+++.+..++ .+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKER-----------EPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999983 45679999997532 122 2446677787777554433 3457899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+.+|++|||||||++||+.+++.+.+.+++.. .++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999998864 37999999999999867999999999999999999988754
No 88
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.7e-50 Score=390.30 Aligned_cols=217 Identities=25% Similarity=0.376 Sum_probs=189.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.+
T Consensus 13 ~~L~l~~l~~~~~~~--~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 359999999999753 589999999999999999999999999999999999999999999999999776643 5789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+||||++.+|+. ||+||+.+... .. .+++.++++.+++.+..++.| .+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999976321 12 234567778787766555444 567999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
||+.+|++|||||||++||+.++..+.+.|++.. .+.|+|+|||+++++.. ||||++|++|+|++.|+++++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 9999999999999999999999999999998864 37899999999999877 99999999999999999999998765
Q ss_pred cHH
Q 018040 343 SSF 345 (362)
Q Consensus 343 ~~~ 345 (362)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 444
No 89
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-50 Score=383.87 Aligned_cols=218 Identities=23% Similarity=0.344 Sum_probs=184.4
Q ss_pred cccEEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC-----
Q 018040 113 QGEVDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----- 184 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----- 184 (362)
...|+++|++|+|++.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34699999999997531 3599999999999999999999999999999999999999999999999988642
Q ss_pred -----------CHHHHhcCcEEEcCCC--CCCcccHHhhcCcCC---CCCHH----HHHHHHHHcCCChHHHhccccchh
Q 018040 185 -----------GLHDLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYADE----EIWEALDKCQLGNEVRKNEGKLES 244 (362)
Q Consensus 185 -----------~~~~~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~ 244 (362)
....+|++++||||++ .+|+.|+++|+.+.. ....+ ++.++++.+++. +.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~----------~~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD----------DS 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC----------hh
Confidence 2446788999999998 688889999997532 12222 233445555543 13
Q ss_pred hhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEE
Q 018040 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLL 322 (362)
Q Consensus 245 ~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~v 322 (362)
..++.+.+||||||||++|||||+++|++|||||||++||+.++..+.+.|.+.. +++|||+|||+++.+.. ||||++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 4566778899999999999999999999999999999999999999999998764 57899999999998865 999999
Q ss_pred EeCCEEEEecChhHHhhc
Q 018040 323 LSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 323 l~~G~i~~~g~~~~l~~~ 340 (362)
|++|++++.|++++++..
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999988654
No 90
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.1e-49 Score=370.35 Aligned_cols=221 Identities=27% Similarity=0.428 Sum_probs=188.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCCC--CHHH
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISSI--GLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~~--~~~~ 188 (362)
++++|++++|++. .+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998653 3445
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
+++.++|+||++.+|+.|+++|+.+.. . .. .+++.++++.+++.+.+. ...+..+.+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 678899999999988899999996421 1 11 234566777787763221 22345567899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
++|||||+.+|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987656899999999999877 99999999999999999999876
Q ss_pred cCCcHH
Q 018040 340 NKSSSF 345 (362)
Q Consensus 340 ~~~~~~ 345 (362)
.+...+
T Consensus 233 ~~~~~~ 238 (247)
T TIGR00972 233 NPKEKR 238 (247)
T ss_pred CCCChH
Confidence 544333
No 91
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.3e-50 Score=367.40 Aligned_cols=202 Identities=26% Similarity=0.348 Sum_probs=173.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~~ 192 (362)
++++|++++|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965433599999999999999999999999999999999999999999999999998665432 36778
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.+|+ .|++||+.+.. .. ..+++.++++.+++.+..++ .+.+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999886 59999996421 11 23456677787777554433 3456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
|||+.+|++|||||||++||+.+++.+.+.+++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998864 47899999999999987 999999999975
No 92
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-50 Score=379.98 Aligned_cols=216 Identities=28% Similarity=0.450 Sum_probs=184.5
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--HHHHh
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--LHDLR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~r 190 (362)
++++||+++|++.. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 88999999997532 35999999999999999999999999999999999999999999999999987643 34677
Q ss_pred cCcEEEcCCC--CCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 191 SRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 191 ~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
++|||+||++ .+|+.|+++|+.+.. .... +++.++++.+++.. .+..+..+.+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 8999999998 467789999997532 1222 34566777777640 1234455678999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+|||||+.+|++|||||||++||+.++..+.+.+++.. .+.|||++||+++.+.. ||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998864 37899999999999876 9999999999999999999986
Q ss_pred hc
Q 018040 339 EN 340 (362)
Q Consensus 339 ~~ 340 (362)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
No 93
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3e-50 Score=382.42 Aligned_cols=213 Identities=27% Similarity=0.443 Sum_probs=187.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|+.. ..+|+||||+|++||++|++||||||||||+|+|+|+++|++|+|.++|.+...- ..+.++++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47889999999832 2599999999999999999999999999999999999999999999999988654 567889999
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+++. |++||+.+... ...+++.++++.+++.+.. +.....||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999998865 99999976321 2246788899999987522 22345689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-C-ceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-D-CTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|+.+|++|||||||+||||.++..+.+.|+++.+ + +||+++||.++.++. ||||++|++|+++..|+++++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998754 5 799999999999998 999999999999999999987654
No 94
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.8e-50 Score=369.94 Aligned_cols=212 Identities=25% Similarity=0.406 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 194 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGGL--VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECCE--EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 4689999999753 59999999999999999999999999999999999999999999999999887665544 56799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC---C--------------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE---Y--------------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~---~--------------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
|+||++.+|+. |+++|+.+... . ..+.+.++++.+++. ...+..+.+||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhCCHH
Confidence 99999999876 99999864211 0 012344555555543 3344556679999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
||||++|||||+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998865 57899999999999987 999999999999999999
Q ss_pred hHHhhc
Q 018040 335 TRLLEN 340 (362)
Q Consensus 335 ~~l~~~ 340 (362)
+++..+
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 988654
No 95
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-49 Score=371.30 Aligned_cols=223 Identities=27% Similarity=0.433 Sum_probs=190.1
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IG 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~ 185 (362)
.+.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 3469999999999753 59999999999999999999999999999999999986 589999999999853 34
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
...+|++++|+||++.+|+.|+++|+.+.. ... ++++.++++.+++.+.+ ...+++.+.+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 456788999999999988899999997531 112 24456677777764332 234456678899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++|||||+.+|++|||||||++||+.+++.+.+.|++..++.|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HhhcCCcH
Q 018040 337 LLENKSSS 344 (362)
Q Consensus 337 l~~~~~~~ 344 (362)
+.+.+...
T Consensus 242 ~~~~~~~~ 249 (260)
T PRK10744 242 IFTKPAKK 249 (260)
T ss_pred HHhCCCcH
Confidence 87754433
No 96
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.6e-50 Score=391.23 Aligned_cols=210 Identities=27% Similarity=0.380 Sum_probs=181.1
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----hcCcEEEcCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSRLSIIPQD 199 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~ 199 (362)
+|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...+ |++++||||+
T Consensus 2 ~~~~~--~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGGK--KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCCc--eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 45433 58999999999999999999999999999999999999999999999999998887766 6789999999
Q ss_pred CCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 200 PTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 200 ~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
+.+|+. |+++|+.+... .. .+++.++++.+++.++. ++.+.+|||||||||+|||||+.+|
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEP 148 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999975 99999975321 11 34566777777775544 3445568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHHH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFA 346 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~ 346 (362)
++|||||||++||+.+++.+++.+.+.. .++|||+|||+++++.. ||||++|++|++++.|++++++.++...|.
T Consensus 149 ~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 149 DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999999999998763 37999999999998876 999999999999999999999887654443
No 97
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.2e-50 Score=365.91 Aligned_cols=210 Identities=24% Similarity=0.338 Sum_probs=179.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 478999999975323599999999999999999999999999999999999999999999999998653 3456778999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+++ .|+++|+.+.. ... .+++.++++.+++.+.. .....+||||||||++|||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHH
Confidence 999999884 69999986421 111 23455667777664433 333456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987667999999999999987 999999999999999988764
No 98
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=370.11 Aligned_cols=224 Identities=29% Similarity=0.427 Sum_probs=190.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHHHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~~~ 189 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 48999999999753 599999999999999999999999999999999999974 69999999999987777778
Q ss_pred hcCcEEEcCCCCCC-cccHHhhcCcCC---C--CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 190 RSRLSIIPQDPTMF-EGSVHNNLDPLE---E--YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 190 r~~i~~v~Q~~~l~-~~tv~enl~~~~---~--~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
++.|+|+||++.++ ..|+.+|+.+.. . .. .+++.++++.+++.+.+. ......+.+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHH
Confidence 88999999999766 469999996421 1 01 234567778887754321 2334556789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999998
Q ss_pred hcCCcHHHH
Q 018040 339 ENKSSSFAQ 347 (362)
Q Consensus 339 ~~~~~~~~~ 347 (362)
+.+...+.+
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14247 234 TNPRHELTE 242 (250)
T ss_pred cCCccHHHH
Confidence 765444433
No 99
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-50 Score=376.71 Aligned_cols=211 Identities=27% Similarity=0.386 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 58999999999643 35999999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEcCCC--CCCcccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDP--TMFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~--~l~~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++ .++..|+.+|+.+... .. .+++.++++.+++.+..++ .+.+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999998 5677899999975321 12 2345667777777554433 34568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||+.+|++|||||||++||+.++..+.+.+++.. +++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999998764 47999999999999876 999999999999999998754
No 100
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=370.79 Aligned_cols=224 Identities=27% Similarity=0.404 Sum_probs=188.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCC--CCCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDIS--SIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~--~~~~~ 187 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 58999999999753 599999999999999999999999999999999999987 4999999999986 34445
Q ss_pred HHhcCcEEEcCCCCCCcc-cHHhhcCcCC---CC--C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 188 DLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EY--A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~--~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
.++++++|+||++.+|+. |+.+|+.+.. .. . ++++.++++.+++.+.+ .......+.+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHH
Confidence 677889999999999875 9999996421 11 1 23455667777764322 123455677899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++|||||+++|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999877 99999999999999999999
Q ss_pred HhhcCCcHHHH
Q 018040 337 LLENKSSSFAQ 347 (362)
Q Consensus 337 l~~~~~~~~~~ 347 (362)
+.+.+...+.+
T Consensus 235 ~~~~~~~~~~~ 245 (253)
T PRK14267 235 VFENPEHELTE 245 (253)
T ss_pred HHhCCCcHHHH
Confidence 98664434443
No 101
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-50 Score=369.76 Aligned_cols=211 Identities=28% Similarity=0.409 Sum_probs=180.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~r~~ 192 (362)
++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 35999999999999999999999999999999999999999999999999987665 3456788
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCCC---------------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLEE---------------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
++|+||++.+|+ .|+++|+.+... ...+++.++++.+++.+ .....+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCHH
Confidence 999999998886 599999864210 11233455566665533 344556789999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999998864 37899999999999986 99999999999999999
Q ss_pred hhHHh
Q 018040 334 PTRLL 338 (362)
Q Consensus 334 ~~~l~ 338 (362)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 98863
No 102
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-49 Score=368.98 Aligned_cols=220 Identities=25% Similarity=0.384 Sum_probs=186.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 359999999999999999999999999999999999999999999999999887766677788999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+ .|++||+.+.. ... .+++.++++.+++.+ ....++.+.+||||||||++|||||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999996431 111 234566677777653 0123445677999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSS 344 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~ 344 (362)
+++|++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+.+...
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 230 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAND 230 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCCh
Confidence 99999999999999999999999999998864 37899999999998877 9999999999999999999987654333
Q ss_pred H
Q 018040 345 F 345 (362)
Q Consensus 345 ~ 345 (362)
+
T Consensus 231 ~ 231 (242)
T cd03295 231 F 231 (242)
T ss_pred H
Confidence 3
No 103
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.9e-50 Score=343.92 Aligned_cols=210 Identities=26% Similarity=0.361 Sum_probs=186.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
+.+++|.|+|+.. =-.++++|++||++||+||||||||||+++|+|+..|.+|+|.|+|++.+..++. ++-+++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 5678999999643 2358899999999999999999999999999999999999999999998876653 467999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC-------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE-------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||+..||. .||.+|+.++. ....+++..++.++|+..+.+++|.. |||||||||||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~-----------LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE-----------LSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccc-----------cCchHHHHHHHHHHH
Confidence 999999996 49999997532 23457788899999999988888765 599999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
+++-+||+||||+|+|||.-+..+..++.+.. ++.|++||||+++.+.. +||++++++|+|.+.|+.++++....
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999999998754 46899999999999988 99999999999999999999987644
No 104
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-49 Score=391.45 Aligned_cols=213 Identities=26% Similarity=0.393 Sum_probs=189.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..++++++|
T Consensus 3 ~L~~~nls~~y~~~--~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECCE--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 58999999999753 5999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCCCCC-cccHHhhcCcCC-----------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMF-EGSVHNNLDPLE-----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~-~~tv~enl~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|++|++.++ +.|+++|+.+.. ....+.+.++++.+++.+..++ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 999999874 679999986432 1123456778888888655433 34568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||||+++|++|||||||++||+.++..+++.|+++. +++|||++||+++.+.. |||+++|++|++++.|++++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999865 57899999999999977 999999999999999999998764
No 105
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-49 Score=371.41 Aligned_cols=224 Identities=23% Similarity=0.462 Sum_probs=189.7
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IG 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~ 185 (362)
...++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 3469999999999753 59999999999999999999999999999999999987 689999999998753 34
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCCC---CC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE---YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
...+|+.++|+||++.+|+.|++||+.+... .. ++++.++++.+++... ++......+.+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHH
Confidence 5567888999999999988899999975321 11 2344556777665432 233456667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeC-----------CE
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSY-----------GL 327 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~-----------G~ 327 (362)
|++|||||+++|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. |||+++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999987667899999999999987 999999996 67
Q ss_pred EEEecChhHHhhcCCcHH
Q 018040 328 IEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 328 i~~~g~~~~l~~~~~~~~ 345 (362)
+++.|+++++++.+...+
T Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (269)
T PRK14259 242 LVEFNETKKIFNSPKQKA 259 (269)
T ss_pred EEEeCCHHHHHhCcCChH
Confidence 999999999987654333
No 106
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-49 Score=382.41 Aligned_cols=228 Identities=19% Similarity=0.296 Sum_probs=189.2
Q ss_pred cEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEeCCCCCHHH
Q 018040 115 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE----PTAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~----p~~G~I~i~g~~i~~~~~~~ 188 (362)
.++++|+++.|+... ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 489999999997532 359999999999999999999999999999999999997 48999999999998877655
Q ss_pred Hh----cCcEEEcCCCC--CCc-ccHHhhcC----cCCCC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 189 LR----SRLSIIPQDPT--MFE-GSVHNNLD----PLEEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 189 ~r----~~i~~v~Q~~~--l~~-~tv~enl~----~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
++ +.|+||||++. +++ .|+.+++. ..... ..+++.++++.+++.+. ...++..+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhC
Confidence 43 36999999984 444 36665542 22111 23456778888887542 12344567789
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
||||||||+|||||+.+|++||+||||++||+.++..+++.|+++. .+.|+|+||||++.+.. ||||++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 37899999999999976 99999999999999
Q ss_pred ecChhHHhhcCCcHHHHHHH
Q 018040 331 FDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 331 ~g~~~~l~~~~~~~~~~~~~ 350 (362)
.|+++++++++...|.+.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ll 254 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQALL 254 (326)
T ss_pred ECCHHHHhhCCCChHHHHHH
Confidence 99999999887777765543
No 107
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-49 Score=371.18 Aligned_cols=221 Identities=24% Similarity=0.407 Sum_probs=188.7
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IG 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~ 185 (362)
.+.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGEK--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECCE--EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 4579999999999753 599999999999999999999999999999999999975 89999999999864 23
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC--C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY--A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~--~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
...+|+.++|+||++.+|+.|+.+|+.+.. .. . .+++.++++.+++.+.+. ...++.+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 456778899999999999889999996421 11 1 234566777777754321 2345567789999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999987667899999999999977 9999999999999999999
Q ss_pred HHhhcCC
Q 018040 336 RLLENKS 342 (362)
Q Consensus 336 ~l~~~~~ 342 (362)
++..++.
T Consensus 248 ~~~~~~~ 254 (267)
T PRK14235 248 KMFTNPD 254 (267)
T ss_pred HHHhCCC
Confidence 9876543
No 108
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-49 Score=388.72 Aligned_cols=216 Identities=20% Similarity=0.310 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 ~l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 48999999999753 59999999999999999999999999999999999999999999999999876554 356799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+|+. |+++|+.+.. ... .+++.++++.+++.+..+ ..+.+|||||||||+||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999965 9999997532 112 234666777777754433 3445689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++|||||||++||+.+++.+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|++++++..+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 999999999999999999999999999998764 37899999999999887 999999999999999999999877654
Q ss_pred HH
Q 018040 344 SF 345 (362)
Q Consensus 344 ~~ 345 (362)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 44
No 109
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-49 Score=377.62 Aligned_cols=215 Identities=28% Similarity=0.402 Sum_probs=183.1
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----CCHHH
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----IGLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~~~~~ 188 (362)
|+++|++|+|+... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999853 23456
Q ss_pred HhcCcEEEcCCC--CCCcccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDP--TMFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+|+.++||||+| .+|..|+.+|+.+... .. .+++.++++.+++.+. ...+.+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCHHHHH
Confidence 788999999998 6788899999975321 22 2345566777776421 223455678999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|++|||||+.+|++|||||||++||+.+++.+.+.++++. +++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998764 47899999999999876 999999999999999999998
Q ss_pred hhc
Q 018040 338 LEN 340 (362)
Q Consensus 338 ~~~ 340 (362)
+..
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 653
No 110
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.7e-49 Score=381.98 Aligned_cols=226 Identities=23% Similarity=0.350 Sum_probs=190.5
Q ss_pred cEEEEEEEEEeCCC-----------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC
Q 018040 115 EVDIHGLQVRYAPH-----------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 183 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-----------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 183 (362)
.|+++||+++|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999631 2358999999999999999999999999999999999999999999999999987
Q ss_pred CCHH---HHhcCcEEEcCCC--CCCc-ccHHhhcCcC----C-CCC----HHHHHHHHHHcCCChHHHhccccchhhhcc
Q 018040 184 IGLH---DLRSRLSIIPQDP--TMFE-GSVHNNLDPL----E-EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTE 248 (362)
Q Consensus 184 ~~~~---~~r~~i~~v~Q~~--~l~~-~tv~enl~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 248 (362)
.+.. .+|++|+||||++ .+++ .|+.+|+.+. . ... .+.+.++++.+++.+ ...+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 7654 3567899999998 4664 5999998531 1 122 233456677777632 12344
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC
Q 018040 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
.+.+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|+++. .+.|+|+||||++.+.. ||||++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 567799999999999999999999999999999999999999999998864 37899999999999987 999999999
Q ss_pred CEEEEecChhHHhhcCCcHHHHHHH
Q 018040 326 GLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 326 G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
|+|++.|++++++.++...|.+.+.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~l~ 262 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKALM 262 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHHHH
Confidence 9999999999999877666766443
No 111
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-50 Score=362.52 Aligned_cols=202 Identities=25% Similarity=0.369 Sum_probs=172.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 468999999975 35999999999999999999999999999999999999999999999999986544 24568999
Q ss_pred EcCCCCCCc-ccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.++. .|+++|+.+... .. .+++.++++.+++.+..+ +.+.+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHH
Confidence 999998886 599999964211 11 234556677777654433 33456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999999877 9999999999998765
No 112
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-49 Score=374.76 Aligned_cols=215 Identities=26% Similarity=0.401 Sum_probs=186.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++||+++|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754446999999999999999999999999999999999999999999999999998777667788899
Q ss_pred EEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++ .++..|+.+|+.+.. ... .+++.++++.+++.+..+.. +.+||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 355679999997531 112 23456677777776554443 4568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|++|||||||++||+.++..+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999988653 7899999999999878999999999999999999887653
No 113
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-49 Score=365.65 Aligned_cols=214 Identities=27% Similarity=0.385 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 190 (362)
|+++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997531 2599999999999999999999999999999999999999999999999998766543 346
Q ss_pred cCcEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
+.++|+||++.+|+ .|++||+.+.. ... .+++.++++.+++.+..+ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 78999999999987 59999986421 111 234566677776654333 344668999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|+++||||||++||+.++..+.+.+++.. + ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998864 3 7899999999999877 99999999999999999888765
Q ss_pred c
Q 018040 340 N 340 (362)
Q Consensus 340 ~ 340 (362)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
No 114
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-49 Score=369.31 Aligned_cols=223 Identities=24% Similarity=0.386 Sum_probs=188.0
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCC--H
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIG--L 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~--~ 186 (362)
..++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ .
T Consensus 11 ~~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 369999999999743 599999999999999999999999999999999999985 7999999999886432 3
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
..+++.++|+||++.+|+.|+++|+.+.. .... +++.++++.+++.+.+ ....+..+.+|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 35677899999999988899999996421 1222 2355677777664321 22345567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|+++||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667999999999999877 9999999999999999999998
Q ss_pred hcCCcHH
Q 018040 339 ENKSSSF 345 (362)
Q Consensus 339 ~~~~~~~ 345 (362)
+++...+
T Consensus 242 ~~~~~~~ 248 (258)
T PRK14268 242 HNPREKS 248 (258)
T ss_pred cCCCCHH
Confidence 7654443
No 115
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.6e-49 Score=367.99 Aligned_cols=211 Identities=27% Similarity=0.386 Sum_probs=179.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~~ 192 (362)
++++|++++|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 7899999999722 359999999999999999999999999999999999999999999999999876543 235778
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCCC---------------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLEE---------------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
++|+||++.+|+ .|+++|+.+... ...+++.++++.+++.+ ..+..+.+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHH
Confidence 999999998886 599999964210 01234455566665543 334456779999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998764 37899999999999876 99999999999999999
Q ss_pred hhHHh
Q 018040 334 PTRLL 338 (362)
Q Consensus 334 ~~~l~ 338 (362)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 98863
No 116
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-49 Score=376.40 Aligned_cols=215 Identities=25% Similarity=0.379 Sum_probs=182.7
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----CCHHH
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----IGLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~~~~~ 188 (362)
++++|++++|++.. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997431 359999999999999999999999999999999999999999999999999853 23456
Q ss_pred HhcCcEEEcCCC--CCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
++++++|+||++ .+|+.|+++|+.+.. .... +.+.++++.+++.+.. ...++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 678899999997 577789999996531 1122 3455677777765221 23445678999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|++|||||+.+|++|||||||++||+.++..+.+.+++.. .+.|||++||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998864 37899999999999876 99999999999999999998
Q ss_pred Hhhc
Q 018040 337 LLEN 340 (362)
Q Consensus 337 l~~~ 340 (362)
+++.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
No 117
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.5e-49 Score=361.71 Aligned_cols=212 Identities=23% Similarity=0.402 Sum_probs=178.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 194 (362)
|+++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999877665544 56799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCCC--C---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEEY--A---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~~--~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
|+||++.+|+. |+++|+.+.... . .+++.++++.++ +++...+..+.+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP----------RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH----------hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999998876 999999653211 1 112233333331 1333445567789999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
.+|++|||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998765 57899999999999877 99999999999999999887653
No 118
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-49 Score=375.49 Aligned_cols=215 Identities=25% Similarity=0.381 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHH
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~~ 188 (362)
++++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 3599999999999999999999999999999999999999999999999998653 2346
Q ss_pred HhcCcEEEcCCC--CCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+|++|||+||+| .+|+.|+.+|+.+.. .... +++.++++.+++.. ...+..+.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQMR 152 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 788999999997 577789999997532 1222 33445566665531 2234456779999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|++|||||+.+|++|||||||++||+.++..+.+.++++. .++|||++||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998864 47999999999999876 99999999999999999998
Q ss_pred Hhhc
Q 018040 337 LLEN 340 (362)
Q Consensus 337 l~~~ 340 (362)
+++.
T Consensus 233 ~~~~ 236 (286)
T PRK13646 233 LFKD 236 (286)
T ss_pred HHhC
Confidence 8764
No 119
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-49 Score=369.08 Aligned_cols=220 Identities=25% Similarity=0.429 Sum_probs=186.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--CH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--GL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 186 (362)
..++++|++++|++. .+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++... +.
T Consensus 20 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 20 HILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred ceEEEEEEEEEeCCc--eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 369999999999753 59999999999999999999999999999999999864 7899999999998642 33
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
..++++++|+||++.+|+.|+.+|+.+.. .. .++.+.++++.+++.+.+ ....+..+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHH
Confidence 45678899999999999889999986421 11 123345566666654221 2334566788999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||++|||||+.+|++|||||||++||+.+++.+.+.+++..+++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999998876 999999999999999999998
Q ss_pred hhcCC
Q 018040 338 LENKS 342 (362)
Q Consensus 338 ~~~~~ 342 (362)
..++.
T Consensus 251 ~~~~~ 255 (268)
T PRK14248 251 FTSPK 255 (268)
T ss_pred HhCCC
Confidence 87643
No 120
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-49 Score=366.91 Aligned_cols=221 Identities=25% Similarity=0.423 Sum_probs=187.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~--~~~~ 187 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 59999999999753 59999999999999999999999999999999999997 3 58999999999853 2344
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC----CCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE----YAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~----~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+... ..+ +++.++++.+++.+.+ ...++..+.+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 66788999999999998899999965321 111 2344566666665432 12345567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|++++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999887 9999999999999999999998
Q ss_pred hcCCcH
Q 018040 339 ENKSSS 344 (362)
Q Consensus 339 ~~~~~~ 344 (362)
+++...
T Consensus 243 ~~~~~~ 248 (259)
T PRK14274 243 SNPDDQ 248 (259)
T ss_pred hCCCCH
Confidence 764443
No 121
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.5e-49 Score=383.29 Aligned_cols=213 Identities=24% Similarity=0.382 Sum_probs=183.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.+
T Consensus 40 ~~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eeEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 359999999999754 5999999999999999999999999999999999999999999999999986543 4567889
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
||+||++.++. .|+.||+.+.. ... .+.+.++++.+++.+. .+....+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHHHHHH
Confidence 99999998875 59999997422 112 1234455666665433 33344568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+++|++|||||||+|||+.++..+.+.|+++. +++|||++||+++.+.. ||||++|++|+++..|+++++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998864 47999999999999987 999999999999999999998654
No 122
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.8e-49 Score=362.66 Aligned_cols=216 Identities=32% Similarity=0.476 Sum_probs=189.1
Q ss_pred cccEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 018040 113 QGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 191 (362)
.+.++++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999753 235999999999999999999999999999999999999999999999999887666666778
Q ss_pred CcEEEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 192 RLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
.++|+||++.+|+.|+++|+.+... ....++.+..+..++.+.++.++.++++.+.+.+.+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 8999999999998899999975322 223334444555666777777776788888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
|+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999987667899999999999977999999999974
No 123
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-49 Score=377.83 Aligned_cols=215 Identities=21% Similarity=0.303 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC---------
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--------- 183 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--------- 183 (362)
|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997542 259999999999999999999999999999999999999999999999876531
Q ss_pred ---------------CCHHHHhcCcEEEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhcc
Q 018040 184 ---------------IGLHDLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNE 239 (362)
Q Consensus 184 ---------------~~~~~~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~ 239 (362)
.....++++||||||+| .+|..|+++|+.+.. ... .+++.++++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 12345778899999986 567789999997532 122 234566777777642
Q ss_pred ccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-c
Q 018040 240 GKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-S 317 (362)
Q Consensus 240 ~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~ 317 (362)
...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++. .++|||+|||+++.+.. |
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 12334556789999999999999999999999999999999999999999998764 47999999999998876 9
Q ss_pred CeEEEEeCCEEEEecChhHHhhc
Q 018040 318 DMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 318 Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||++|++|++++.|++++++.+
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998754
No 124
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.6e-49 Score=362.18 Aligned_cols=202 Identities=26% Similarity=0.383 Sum_probs=171.3
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH----H
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD----L 189 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~----~ 189 (362)
++++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997521 36999999999999999999999999999999999999999999999999987665322 3
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
++.++|+||++.+|+. |+++|+.+.. ... .+++.++++.+++.+.. ...+.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 5679999999998875 9999986521 111 23456677777765433 334456899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
+|||||+.+|++|||||||++||+.+++.+.+.+++..+ ++|||++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999988643 7899999999998877999999999974
No 125
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-49 Score=360.72 Aligned_cols=208 Identities=25% Similarity=0.366 Sum_probs=178.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 5789999999753 599999999999999999999999999999999999999999999999988643 3456778999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+++. |+++|+.+.. .. .++++.++++.+++.+..+. ...+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999988875 9999986421 11 12345667777777544333 3456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
+.+|+++||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999998764 3 7899999999999987 999999999999999987764
No 126
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-49 Score=366.29 Aligned_cols=224 Identities=26% Similarity=0.391 Sum_probs=187.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|++++|+.. ++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++... +..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGNY--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 48999999999753 59999999999999999999999999999999999997 4799999999988542 334
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC---C-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|++|++.+|+.|+++|+.+... . .++++.++++.+++.... ....+..+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHH
Confidence 56778999999999998899999964211 1 123445666766664211 12334567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|+++||||||++||+.+++.+.+.+++..++.|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999887 9999999999999999999998
Q ss_pred hcCCcHHHH
Q 018040 339 ENKSSSFAQ 347 (362)
Q Consensus 339 ~~~~~~~~~ 347 (362)
..+...|.+
T Consensus 235 ~~~~~~~~~ 243 (251)
T PRK14251 235 IAPKKQITS 243 (251)
T ss_pred hCCCCHHHH
Confidence 765544543
No 127
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-49 Score=365.67 Aligned_cols=221 Identities=23% Similarity=0.409 Sum_probs=186.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC---CCC--CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI---VEP--TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl---~~p--~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|+++.|++. ++|+++||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGDF--HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECCE--eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 58999999999753 599999999999999999999999999999999997 454 589999999998653 234
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+.+|+.+.. .. .++++.++++.+++.+.+ ....++.+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 5678899999999998889999996421 11 123455677777765432 22345667789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|+++||||||++||+.+++.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999998
Q ss_pred hcCCcH
Q 018040 339 ENKSSS 344 (362)
Q Consensus 339 ~~~~~~ 344 (362)
+++...
T Consensus 234 ~~~~~~ 239 (250)
T PRK14245 234 TNPEKE 239 (250)
T ss_pred cCCCCh
Confidence 765433
No 128
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-49 Score=385.39 Aligned_cols=217 Identities=23% Similarity=0.385 Sum_probs=187.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++...+. .++.+
T Consensus 18 ~~l~l~~v~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 369999999999753 59999999999999999999999999999999999999999999999999876654 46789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
||+||++.+|+. |+.||+.+.. ... .+++.++++.+++.+..++ .+.+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----------KPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999975 9999997532 122 2345667777777654433 44568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
||+.+|++|||||||++||+.+++.+.+.+++.. .+.|+|+|||+++++.. ||||++|++|++++.|++++++.++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999998887653 37899999999999877 99999999999999999999998766
Q ss_pred cHH
Q 018040 343 SSF 345 (362)
Q Consensus 343 ~~~ 345 (362)
..|
T Consensus 243 ~~~ 245 (377)
T PRK11607 243 TRY 245 (377)
T ss_pred cHH
Confidence 544
No 129
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-49 Score=362.54 Aligned_cols=208 Identities=24% Similarity=0.312 Sum_probs=177.6
Q ss_pred cEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H
Q 018040 115 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 189 (362)
.++++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 589999999997532 36999999999999999999999999999999999999999999999999998776543 3
Q ss_pred h-cCcEEEcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 190 R-SRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 190 r-~~i~~v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
+ +.++|+||++.+|+. |+++|+.+. .... .+++.++++.+++.+.. .+.+.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 3 679999999988875 999998642 1111 23456677777765433 33456789999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
++||||++.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998863 4799999999999998888999999999998775
No 130
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.5e-49 Score=357.85 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=170.5
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++|++++|++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999752 359999999999999999999999999999999999999999999999998753 3456789999
Q ss_pred cCCC--CCCcccHHhhcCcCCC---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 197 PQDP--TMFEGSVHNNLDPLEE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 197 ~Q~~--~l~~~tv~enl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
||++ .++..|++||+.+... ...+++.++++.+++.+..++ .+.+||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhCC
Confidence 9997 3567799999975321 223467788888887654433 34568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
+++||||||++||+.+++.+.+.+++. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999886 457899999999999987 9999999999975
No 131
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6.6e-49 Score=379.26 Aligned_cols=229 Identities=25% Similarity=0.370 Sum_probs=190.5
Q ss_pred cEEEEEEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHH
Q 018040 115 EVDIHGLQVRYAP--HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~ 189 (362)
.++++|+++.|+. +...+++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5999999999953 2235899999999999999999999999999999999999996 9999999999988876554
Q ss_pred ---h-cCcEEEcCCC--CCCc-ccHHhhcC----cCCCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 190 ---R-SRLSIIPQDP--TMFE-GSVHNNLD----PLEEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 190 ---r-~~i~~v~Q~~--~l~~-~tv~enl~----~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
| ++|+||||++ .+++ .|+.+|+. ....... +++.++++.+++.+. ...++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~--------~~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA--------RKRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCh--------HHHhcCCcccCC
Confidence 3 4799999998 4554 47777663 2111222 345566777766421 123456778899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
|||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||++|++|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988643 7899999999999986 999999999999999
Q ss_pred cChhHHhhcCCcHHHHHHHH
Q 018040 332 DSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 332 g~~~~l~~~~~~~~~~~~~~ 351 (362)
|+++++++++...|.+.+..
T Consensus 244 g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred CCHHHHHhCCCCHHHHHHHH
Confidence 99999998877778765543
No 132
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-50 Score=349.41 Aligned_cols=213 Identities=24% Similarity=0.350 Sum_probs=184.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.+++.+++++|+... .+++||||+++.||++||.|||||||||+|++|++++.|++|+|++||.|+... +...|++||
T Consensus 1 Ml~v~~l~K~y~~~v-~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGSKV-QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccCHH-hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 378999999998743 489999999999999999999999999999999999999999999999998654 456899999
Q ss_pred EEcCCCCCCc-ccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+++-+..++. .|++|||.++.. .. +.++.+..+.+++.+.++ .+..+||-||||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHH
Confidence 9997777775 599999986532 22 344555566666554443 3444579999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|+++|++++|||||||||..+.+.+.+.+.+.+ ++++||++||.+++++. ||||+++++|+++..|+++++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999999876 48999999999999997 999999999999999999998765
No 133
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-49 Score=377.77 Aligned_cols=227 Identities=24% Similarity=0.340 Sum_probs=190.8
Q ss_pred cEEEEEEEEEeCCC--------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH
Q 018040 115 EVDIHGLQVRYAPH--------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL 186 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~ 186 (362)
.|+++|+++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 58999999999631 2358999999999999999999999999999999999999999999999999987764
Q ss_pred H---HHhcCcEEEcCCCC--CCc-ccHHhhcCc----CCCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 187 H---DLRSRLSIIPQDPT--MFE-GSVHNNLDP----LEEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 187 ~---~~r~~i~~v~Q~~~--l~~-~tv~enl~~----~~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
. .+|++|+||||++. +++ .|+.+++.. ..... .+++.++++.+++.+. .....+.+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE----------HYDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH----------HhcCCCcc
Confidence 3 45778999999983 555 388887742 11111 3456777888887531 12344667
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .+.|+|+||||++.+.. ||||++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 37899999999999987 9999999999999
Q ss_pred EecChhHHhhcCCcHHHHHHHH
Q 018040 330 EFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 330 ~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
+.|+++++++++...|.+.+..
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHH
Confidence 9999999998776677765543
No 134
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=364.15 Aligned_cols=220 Identities=28% Similarity=0.441 Sum_probs=186.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~ 186 (362)
+.++++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 468999999999753 599999999999999999999999999999999999763 69999999999864 234
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
..+|+.++|+||++.+|+.|+++|+.+.. .. .++.+.++++.+++.+.+ ....+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHHH
Confidence 45678899999999988889999997531 11 123445566666664322 2334566788999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||++|||||+.+|+++||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887667899999999998877 999999999999999999998
Q ss_pred hhcCC
Q 018040 338 LENKS 342 (362)
Q Consensus 338 ~~~~~ 342 (362)
...+.
T Consensus 233 ~~~~~ 237 (250)
T PRK14240 233 FTNPK 237 (250)
T ss_pred HhCCC
Confidence 76543
No 135
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.6e-48 Score=404.53 Aligned_cols=264 Identities=17% Similarity=0.210 Sum_probs=214.6
Q ss_pred CCcCHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC------cccc-CC---------
Q 018040 46 GVVDPAIA-GLAVTFG---LNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPL------VIEA-SR--------- 105 (362)
Q Consensus 46 ~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~------~~~~-~~--------- 105 (362)
+.++.+.. +.+++|. ..+..++..+...+.+++++.++.+|+.++++.+++... .... ..
T Consensus 358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (659)
T TIGR00954 358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN 437 (659)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 55665543 3344443 345666777888899999999999999999864322100 0000 00
Q ss_pred -C---CCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 018040 106 -P---NCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181 (362)
Q Consensus 106 -~---~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 181 (362)
. .......+.++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 438 ~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--- 513 (659)
T TIGR00954 438 LVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--- 513 (659)
T ss_pred ccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---
Confidence 0 0000123469999999999744 3599999999999999999999999999999999999999999998864
Q ss_pred CCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC--------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 182 SSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE--------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 182 ~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
|++++||||+|.+|++|++||+.+.. ...+++++++++.+++.+++++ +.++++..+ .+.+|
T Consensus 514 --------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~L 583 (659)
T TIGR00954 514 --------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVL 583 (659)
T ss_pred --------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCC
Confidence 46799999999999999999997632 2456788899999999988877 888998875 67899
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
|||||||++||||++++|+++|||||||+||+.+++.+.+.+++. ++|+|+||||++.+..||++++|+.
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999764 7999999999999988999999973
No 136
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-49 Score=371.99 Aligned_cols=218 Identities=25% Similarity=0.366 Sum_probs=184.1
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----hcC
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSR 192 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~~ 192 (362)
.++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 567899999754 58999999999999999999999999999999999999999999999999876654332 357
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.+|+ .|+++|+.+.. ... .+++.++++.+++.+..+. .+.+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 999999999885 59999986421 111 2345667777776544433 3456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||+++|++|||||||++||+.+++.+.+.+.+.. .++|+|++||+++.+.. ||++++|++|++++.|+++++++.+
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998764 37899999999999877 9999999999999999999998765
Q ss_pred CcHHHH
Q 018040 342 SSSFAQ 347 (362)
Q Consensus 342 ~~~~~~ 347 (362)
...|.+
T Consensus 253 ~~~~~~ 258 (269)
T cd03294 253 ANDYVR 258 (269)
T ss_pred CcHHHH
Confidence 545544
No 137
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.3e-49 Score=362.37 Aligned_cols=211 Identities=26% Similarity=0.359 Sum_probs=180.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGAR--RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 7899999999753 599999999999999999999999999999999999999999999999998765543 3458999
Q ss_pred EcCCCCCC-cccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMF-EGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~-~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.++ ..|+++|+.+.. ... .+++.+.++.+++. ...+..+.+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999875 569999986431 111 22344555655553 334555677999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+.+|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999998864 47899999999999877999999999999999999998765
No 138
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=7e-49 Score=369.49 Aligned_cols=223 Identities=21% Similarity=0.327 Sum_probs=186.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~ 191 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 59999999999753 599999999999999999999999999999999999999999999999998765433 3467
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcC----CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPL----EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~----~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
+++|+||++.+|+. |+.+|+.+. ..... ..+.++++.+++.+.. .....+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHH
Confidence 89999999999875 999998642 11121 2344566666664432 3345678999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.+++.+.+.+++.. + ++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998864 3 7899999999999987 99999999999999999999987
Q ss_pred cCCcHHHHHHH
Q 018040 340 NKSSSFAQLVA 350 (362)
Q Consensus 340 ~~~~~~~~~~~ 350 (362)
++...+..++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 54434444443
No 139
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.8e-49 Score=357.32 Aligned_cols=202 Identities=22% Similarity=0.357 Sum_probs=175.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGKK--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECCe--EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 4789999999653 699999999999999999999999999999999999999999999999987643 456778999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
+||++.+++ .|++||+.+.. ...++++.++++.+++.+..++ .+.+||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 59999986431 2245567778888887654433 34568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998764 57899999999999987 9999999999998765
No 140
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=9.8e-48 Score=431.48 Aligned_cols=293 Identities=22% Similarity=0.291 Sum_probs=240.5
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----ccc------------c---
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPL----VIE------------A--- 103 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~----~~~------------~--- 103 (362)
+..+.++++.+..++++...+..++..++..+..+.++.+|++|+.+|++.++.... ..+ .
T Consensus 493 ~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1560)
T PTZ00243 493 LLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAA 572 (1560)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccccccccccccc
Confidence 345678998888888888888888888999999999999999999999975431100 000 0
Q ss_pred --CC-------C---------------------------CCCCCCcccEEEEEEEEEeC---------------------
Q 018040 104 --SR-------P---------------------------NCSWPSQGEVDIHGLQVRYA--------------------- 126 (362)
Q Consensus 104 --~~-------~---------------------------~~~~~~~~~i~~~~l~~~y~--------------------- 126 (362)
.. + +..+...+.+.++|+++.++
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (1560)
T PTZ00243 573 VLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPT 652 (1560)
T ss_pred ccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 0 00000112466666666532
Q ss_pred -----------------CCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH
Q 018040 127 -----------------PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 127 -----------------~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~ 189 (362)
...+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------ 720 (1560)
T PTZ00243 653 SERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------ 720 (1560)
T ss_pred ccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------
Confidence 112358999999999999999999999999999999999999999999863
Q ss_pred hcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
++|+|+||+|++|++|++||+.+....+.+++.++++.+++.+.++.+|.|+++.++++|.+|||||||||+||||++.
T Consensus 721 -~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~ 799 (1560)
T PTZ00243 721 -RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA 799 (1560)
T ss_pred -CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 4699999999999999999999876665667888899999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHT-LGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
+|+++||||||++||+.+.+.+.+. +....+++|+|++||+++.+..||+|++|++|++++.|+++++++. +.|.++
T Consensus 800 ~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~--~~~~~~ 877 (1560)
T PTZ00243 800 NRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT--SLYATL 877 (1560)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC--hHHHHH
Confidence 9999999999999999988877654 4444468999999999999988999999999999999999999864 346665
Q ss_pred HH
Q 018040 349 VA 350 (362)
Q Consensus 349 ~~ 350 (362)
..
T Consensus 878 ~~ 879 (1560)
T PTZ00243 878 AA 879 (1560)
T ss_pred HH
Confidence 54
No 141
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=5.7e-49 Score=375.75 Aligned_cols=211 Identities=23% Similarity=0.328 Sum_probs=184.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+++++||
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGTQ--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECCE--EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 7899999999753 59999999999999999999999999999999999999999999999999865 34467788999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+. |+.||+.+.. ... .+++.++++.+++.+.. ++...+||||||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999996422 112 23456677777765443 344566899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+.+|++|||||||+|||+.+++.+.+.+++..+++|||++||+++.+.. ||||++|++|+++..|+++++...
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999987768999999999999987 999999999999999999998653
No 142
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-48 Score=363.74 Aligned_cols=223 Identities=24% Similarity=0.413 Sum_probs=188.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEeCCCC--CH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDISSI--GL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~~--~~ 186 (362)
+.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 3 ~~l~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCCe--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 469999999999753 59999999999999999999999999999999999986 4 689999999998643 33
Q ss_pred HHHhcCcEEEcCCCCCCc-ccHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 187 HDLRSRLSIIPQDPTMFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
..+++.++|+||++.+|+ .|+++|+.+. .... ++++.++++.+++.+.+. ...+..+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHHH
Confidence 456788999999999887 5999999642 1111 234566677777654332 22345677899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. |||+++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HhhcCCcHH
Q 018040 337 LLENKSSSF 345 (362)
Q Consensus 337 l~~~~~~~~ 345 (362)
+...+...+
T Consensus 234 ~~~~~~~~~ 242 (252)
T PRK14256 234 IFTTPEKKQ 242 (252)
T ss_pred HHhCCCcHH
Confidence 987654444
No 143
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-49 Score=378.71 Aligned_cols=229 Identities=21% Similarity=0.309 Sum_probs=189.2
Q ss_pred cEEEEEEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEeCCCCCHHH
Q 018040 115 EVDIHGLQVRYAP--HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE----PTAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~----p~~G~I~i~g~~i~~~~~~~ 188 (362)
.|+++|++++|+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+..+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22359999999999999999999999999999999999996 58999999999998777654
Q ss_pred H----hcCcEEEcCCCC--CCc-ccHHhhcCcC-------C----C--CCHHHHHHHHHHcCCChHHHhccccchhhhcc
Q 018040 189 L----RSRLSIIPQDPT--MFE-GSVHNNLDPL-------E----E--YADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248 (362)
Q Consensus 189 ~----r~~i~~v~Q~~~--l~~-~tv~enl~~~-------~----~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 248 (362)
+ ++.|+||||++. +++ .|+.+|+... . . ...+++.++++.+++.+.. .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 3 247999999986 333 4888877420 0 0 0124567788888886421 12344
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeC
Q 018040 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 5667899999999999999999999999999999999999999999998653 7899999999999987 999999999
Q ss_pred CEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 326 GLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 326 G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
|+|++.|+++++++++...|.+.+..
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ll~ 260 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQALIR 260 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 99999999999988776677664433
No 144
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-49 Score=358.20 Aligned_cols=202 Identities=27% Similarity=0.426 Sum_probs=174.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 4789999999753 5999999999999 99999999999999999999999999999999999887655 567788999
Q ss_pred EcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|.. |+.+|+.+. .... .+++.++++.+++.+..+ ..+.+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999998875 999998642 1111 234566777777754332 34456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987667999999999999976 9999999999998764
No 145
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=363.95 Aligned_cols=219 Identities=28% Similarity=0.410 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CC---CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EP---TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p---~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++... +..
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 58999999999753 5999999999999999999999999999999999995 36 489999999988543 234
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+.. . .. ++++.++++.+++.+.+ .+..++.+.+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHH
Confidence 5677899999999999899999986421 1 11 23345566777664322 23455667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|++|||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998876 9999999999999999999998
Q ss_pred hcCC
Q 018040 339 ENKS 342 (362)
Q Consensus 339 ~~~~ 342 (362)
+.+.
T Consensus 236 ~~~~ 239 (252)
T PRK14239 236 MNPK 239 (252)
T ss_pred hCCC
Confidence 7643
No 146
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=6.7e-49 Score=375.62 Aligned_cols=212 Identities=24% Similarity=0.349 Sum_probs=181.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 58999999999753 599999999999999999999999999999999999999999999999988643 345678899
Q ss_pred EEcCCCCCCc-ccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+++ .|+++|+.+.. .... +++.++++.+++.+. ......+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCchhhCCHHHHHHHHHHHH
Confidence 9999998885 59999986321 1222 234455666665433 334456789999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|+.+|++|||||||++||+.+++.+.+.+++.. +++|||++||+++.+.. ||||++|++|++++.|+++++...
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998864 57899999999999987 999999999999999999998654
No 147
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5e-49 Score=362.20 Aligned_cols=211 Identities=25% Similarity=0.413 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 194 (362)
++++|++++|++. .+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999876665443 46799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+|+. |+++|+.+.. ... .+++.++++.+++. ...+..+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHHHH
Confidence 99999998876 9999996421 111 12334555555543 33445566789999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|+.+|++|||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998764 47899999999998877 99999999999999999988764
No 148
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.1e-48 Score=364.70 Aligned_cols=217 Identities=24% Similarity=0.399 Sum_probs=183.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----------
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---------- 185 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---------- 185 (362)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCe--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 4789999999753 5999999999999999999999999999999999999999999999999886542
Q ss_pred ---HHHHhcCcEEEcCCCCCCc-ccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 186 ---LHDLRSRLSIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 186 ---~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
...+++.++|++|++.+|+ .|+.+|+.+.. ... ++.+.++++.+++.+. +++.+.+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhhc
Confidence 1346788999999998886 69999996421 111 2345566666666443 33445678
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||++|||||+++|+++||||||++||+.++..+.+.|++.. .+.|+|++||+++.+.. |||+++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998764 37899999999999976 99999999999999
Q ss_pred ecChhHHhhcCCcHH
Q 018040 331 FDSPTRLLENKSSSF 345 (362)
Q Consensus 331 ~g~~~~l~~~~~~~~ 345 (362)
.|+++++...+...+
T Consensus 228 ~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 228 QGKPDEIFRQPKEER 242 (252)
T ss_pred eCCHHHHhcCCCcHH
Confidence 999999976654334
No 149
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-49 Score=371.79 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~~ 192 (362)
.|+++|++++|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+++.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 59999999999633 35999999999999999999999999999999999999999999999999984 2334567888
Q ss_pred cEEEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 193 LSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 193 i~~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
++|+||++ .+++.|+++|+.+.. ... .+.+.++++.+++.+. .+..+.+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHHH
Confidence 99999998 467789999996521 122 2345666777776543 344567789999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||+.+|++|||||||++||+.++..+.+.+++..+ ++|||++||+++.+.. |||+++|++|++++.|+++++...
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988643 7899999999999986 999999999999999999988653
No 150
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.4e-49 Score=359.30 Aligned_cols=205 Identities=24% Similarity=0.388 Sum_probs=175.3
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
++++|++++|++.. +++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....+++.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999997532 159999999999999999999999999999999999999999999999999864 345667889
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+|+||++.+|+. |++||+.+.. ... .+++.++++.+++.+.. .+.+.+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHH
Confidence 999999998875 9999986421 111 23456677777665433 3345668999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
|++.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. |||+++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998864 47899999999999877 9999999999998754
No 151
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-48 Score=361.75 Aligned_cols=213 Identities=23% Similarity=0.352 Sum_probs=181.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--HHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--LHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~r~~i 193 (362)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999975 35999999999999999999999999999999999999999999999999987543 34567789
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++.++. .|+++|+.+.. ... .+++.++++.+++.+ .....+.+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-----------RAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-----------HHhcChhhcCHHHHHHHHHH
Confidence 99999998886 59999996521 111 223445566665543 33445567899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
||++.+|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. |||+++|++|++++.|+++++.+.+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998764 47999999999999977 9999999999999999999987654
No 152
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-48 Score=362.21 Aligned_cols=219 Identities=27% Similarity=0.433 Sum_probs=186.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~~--~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHKH--QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECCe--eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 58999999999753 5999999999999999999999999999999999999997 69999999988643 334
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC---C-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|++||+.+... . . ++.+.++++.+++.+.+ ....+..+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHHH
Confidence 66788999999999998899999975321 1 1 12344455666665432 23456678899999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|+++||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887667999999999999988 8999999999999999999987
Q ss_pred hcCC
Q 018040 339 ENKS 342 (362)
Q Consensus 339 ~~~~ 342 (362)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14249 235 SRPR 238 (251)
T ss_pred hCCC
Confidence 6644
No 153
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-48 Score=365.15 Aligned_cols=220 Identities=25% Similarity=0.423 Sum_probs=188.4
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 186 (362)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999964 369999999999999999999999999999999999996 589999999999854 234
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
..+++.++|+||++.+|+.|+++|+.+.. . .. ++++.++++.+++.+.+ +..+++.+.+||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHH
Confidence 45678899999999999889999997521 1 11 23455667777775433 2345567788999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||++|||||+++|++|||||||++||+.++..+.+.|++..++.|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999876 999999999999999999999
Q ss_pred hhcCC
Q 018040 338 LENKS 342 (362)
Q Consensus 338 ~~~~~ 342 (362)
...+.
T Consensus 250 ~~~~~ 254 (267)
T PRK14237 250 FTNPK 254 (267)
T ss_pred hcCCC
Confidence 76543
No 154
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-49 Score=365.50 Aligned_cols=223 Identities=26% Similarity=0.372 Sum_probs=192.7
Q ss_pred cEEEEEEEEEeCCCC----------------------CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 018040 115 EVDIHGLQVRYAPHL----------------------PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 172 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~----------------------~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G 172 (362)
.|+++||++-|+.+. ..-++|+||+|+.||++.|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588888888886421 1237999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHH----hcCcEEEcCCCCCCcc-cHHhhcCcCCC---C----CHHHHHHHHHHcCCChHHHhccc
Q 018040 173 LIAIDGIDISSIGLHDL----RSRLSIIPQDPTMFEG-SVHNNLDPLEE---Y----ADEEIWEALDKCQLGNEVRKNEG 240 (362)
Q Consensus 173 ~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~~~-tv~enl~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~ 240 (362)
+|+++|.++..++..++ |+++++|||+..|++. ||.+|..|.-+ . ..++..++++.+||..+.++.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 99999999999887654 3569999999999975 99999987532 1 23456778888988877666554
Q ss_pred cchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-c
Q 018040 241 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-S 317 (362)
Q Consensus 241 ~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~ 317 (362)
+|||||||||.|||||+.+|+|||||||+|+|||--+..+++.|.++. -++||++||||++++.+ .
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 469999999999999999999999999999999999999999887653 36899999999999888 9
Q ss_pred CeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 318 DMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 318 Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
|||.+|++|+|+..|+|+|++.+|...|-.-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 9999999999999999999999887666433
No 155
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-48 Score=362.31 Aligned_cols=212 Identities=24% Similarity=0.344 Sum_probs=182.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 2 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDGF--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 47899999999753 59999999999999999999999999999999999999999999999999877665543 4579
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCC---------------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEY---------------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~---------------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
+|+||++.+|+. |+++|+.+.... ..+++.++++.+++.+ ..+....+|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 999999999976 999998652110 1234455666665543 3345566799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++||||++.+|++|||||||++||+.+++.+.+.+++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999987 99999999999999999999
Q ss_pred Hhh
Q 018040 337 LLE 339 (362)
Q Consensus 337 l~~ 339 (362)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 864
No 156
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-48 Score=362.59 Aligned_cols=224 Identities=25% Similarity=0.435 Sum_probs=188.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~~ 187 (362)
.|+++|++++|++ .++++++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 5899999999974 3599999999999999999999999999999999999984 899999999988643 233
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+.. ... ++++.++++.+++.+.+ +...++.+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 5677899999999998899999997421 111 23345667777765432 23355667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+.+|+++||||||++||+.++..+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998876 9999999999999999999987
Q ss_pred hcCCcHHHH
Q 018040 339 ENKSSSFAQ 347 (362)
Q Consensus 339 ~~~~~~~~~ 347 (362)
+.+...+..
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14262 234 ERPKNKLTE 242 (250)
T ss_pred hCCCChHHH
Confidence 654433443
No 157
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.6e-48 Score=362.83 Aligned_cols=215 Identities=25% Similarity=0.383 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--------H
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--------L 186 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--------~ 186 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 48999999999753 5999999999999999999999999999999999999999999999999886432 2
Q ss_pred HHHhcCcEEEcCCCCCCc-ccHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 187 HDLRSRLSIIPQDPTMFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
..+++.++|+||++.+|+ .|+++|+.+. .... .+.+.++++.+++.+. .+..+.+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChHH
Confidence 346778999999998886 5999999642 1112 2234556666665432 344567799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
|||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998765 47899999999999977 9999999999999999999
Q ss_pred HHhhcCC
Q 018040 336 RLLENKS 342 (362)
Q Consensus 336 ~l~~~~~ 342 (362)
++.+.+.
T Consensus 230 ~~~~~~~ 236 (250)
T PRK11264 230 ALFADPQ 236 (250)
T ss_pred HHhcCCC
Confidence 9876543
No 158
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-48 Score=384.28 Aligned_cols=203 Identities=27% Similarity=0.406 Sum_probs=175.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----hcCcEEEcCCCCCCc-cc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSRLSIIPQDPTMFE-GS 206 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~~-~t 206 (362)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+...+ +++++|+||++.+|+ .|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999987765443 357999999999986 49
Q ss_pred HHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 207 VHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 207 v~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
++||+.+.. ... .+++.++++.+++.+..++ .+.+||||||||++|||||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999997531 111 2455677888877654443 3456899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHH
Q 018040 280 TASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
|++||+.+++.+++.|.+.. .++|||++||+++.+.. ||+|++|++|++++.|++++++.++...|
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 99999999999999998763 47899999999999877 99999999999999999999987654444
No 159
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-48 Score=369.22 Aligned_cols=214 Identities=22% Similarity=0.336 Sum_probs=184.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++.. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 488999999996432 5999999999999999999999999999999999999999999999999987766667788899
Q ss_pred EEcCCCC--CCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDPT--MFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~~--l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++. +++.|+.+|+.+.. ... .+.+.++++.+++.+...+ .+..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999973 66779999996421 122 2345667777776544433 34568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|++|||||||++||+.+++.+.+.+++..+ +.|||++||+++.+.. ||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988643 7899999999999976 999999999999999999998653
No 160
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-48 Score=368.51 Aligned_cols=213 Identities=24% Similarity=0.389 Sum_probs=181.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~i~ 194 (362)
++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999987654 346678899
Q ss_pred EEcCCCC--CCcccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDPT--MFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~~--l~~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++. ++..|+.+|+.+... .. .+.+.++++.+++.+. .+..+..||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHHH
Confidence 9999985 456799999975321 12 2345556666666443 34445678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|+++||||||++||+.++..+.+.++++. ++.|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998764 47999999999999977999999999999999999887653
No 161
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-48 Score=361.91 Aligned_cols=219 Identities=24% Similarity=0.392 Sum_probs=186.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECCe--eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 58999999999753 599999999999999999999999999999999999875 799999999998643 234
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC---C-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+... . . .+++.++++.+++.+.+ ....+..+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-------KDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHHH
Confidence 56778999999999998999999975311 1 1 23345677777764322 22345567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++||||++.+|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999887 9999999999999999999997
Q ss_pred hcCC
Q 018040 339 ENKS 342 (362)
Q Consensus 339 ~~~~ 342 (362)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14270 235 LEPQ 238 (251)
T ss_pred cCCC
Confidence 6543
No 162
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-48 Score=365.66 Aligned_cols=224 Identities=26% Similarity=0.422 Sum_probs=187.4
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--C
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--I 184 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~ 184 (362)
....++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 21 ~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 21 KKVVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CceEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 34469999999999753 59999999999999999999999999999999999997 699999999998853 2
Q ss_pred CHHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CCCH-----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 185 GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EYAD-----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 185 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~~~-----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
+...+++.++|+||++.+|..|+.+|+.+.. ...+ +.+.++++.+++.+ ++...++..+.+||||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgG 171 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGG 171 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHH
Confidence 3456678899999999999889999996421 1111 12334444444322 2334456677889999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999887667999999999999887 9999999999999999999
Q ss_pred HHhhcCCcH
Q 018040 336 RLLENKSSS 344 (362)
Q Consensus 336 ~l~~~~~~~ 344 (362)
++..++...
T Consensus 252 ~~~~~~~~~ 260 (271)
T PRK14238 252 KIFSNPSDK 260 (271)
T ss_pred HHHcCCCCH
Confidence 997765433
No 163
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-49 Score=364.75 Aligned_cols=221 Identities=26% Similarity=0.433 Sum_probs=186.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCCC--HHH
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSIG--LHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~~--~~~ 188 (362)
-+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 568999999974 359999999999999999999999999999999999986 47999999999876443 234
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCC---CC------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLE---EY------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+++.++|+||++.+|+.|+.+|+.+.. .. .++++.++++.+++.+.+ .+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 677899999999999889999986421 11 123455677777775432 12344566789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999887668999999999999887 9999999999999999999998
Q ss_pred hcCCcHH
Q 018040 339 ENKSSSF 345 (362)
Q Consensus 339 ~~~~~~~ 345 (362)
+.+...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 7654444
No 164
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.1e-48 Score=365.42 Aligned_cols=216 Identities=25% Similarity=0.339 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYAPH-------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 187 (362)
.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 48899999999631 24699999999999999999999999999999999999999999999999998766543
Q ss_pred H---HhcCcEEEcCCCC--CCc-ccHHhhcCcC----CCC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 188 D---LRSRLSIIPQDPT--MFE-GSVHNNLDPL----EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 188 ~---~r~~i~~v~Q~~~--l~~-~tv~enl~~~----~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
+ +++.++|+||++. +++ .|+++|+.+. ... ..+++.++++.+++.. ...+..+.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 3 5678999999973 443 5999998431 111 1234566777776642 1234455679
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||++|||||+.+|++|||||||++||+.+++.+.+.|++..+ ++|||++||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999988642 7899999999999986 99999999999999
Q ss_pred ecChhHHhhc
Q 018040 331 FDSPTRLLEN 340 (362)
Q Consensus 331 ~g~~~~l~~~ 340 (362)
.|+++++...
T Consensus 232 ~g~~~~~~~~ 241 (265)
T TIGR02769 232 ECDVAQLLSF 241 (265)
T ss_pred ECCHHHHcCC
Confidence 9999999864
No 165
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-48 Score=362.28 Aligned_cols=226 Identities=25% Similarity=0.386 Sum_probs=189.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~~ 187 (362)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 59999999999753 599999999999999999999999999999999999763 489999999998765 344
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC----CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
..++.++|+||++.+|+.|+++|+.+... .. ++.+.++++.+++.+.+ .+..++.+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHHH
Confidence 56778999999999998899999975321 11 22345566666654322 23456677889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++||||++.+|+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999887667899999999999976 9999999999999999999987
Q ss_pred hcCCcHHHHHH
Q 018040 339 ENKSSSFAQLV 349 (362)
Q Consensus 339 ~~~~~~~~~~~ 349 (362)
.++...+.+.+
T Consensus 237 ~~~~~~~~~~~ 247 (253)
T PRK14261 237 ENPHEELTENY 247 (253)
T ss_pred hCCCcHHHHHH
Confidence 66544454433
No 166
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-48 Score=369.87 Aligned_cols=216 Identities=25% Similarity=0.384 Sum_probs=185.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEeCCCCCHHHHh
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA---GLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---G~I~i~g~~i~~~~~~~~r 190 (362)
..++++|++++|++...++++++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 3699999999997543459999999999999999999999999999999999999987 8999999999776666677
Q ss_pred cCcEEEcCCCC--CCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 191 SRLSIIPQDPT--MFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 191 ~~i~~v~Q~~~--l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
++++|+||++. +++.|+.+|+.+.. .... +++.++++.+++.+.. +..+.+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHH
Confidence 88999999984 45679999997531 1222 3456677777765443 334567899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+..|||+++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998864 3789999999999987799999999999999999998765
Q ss_pred c
Q 018040 340 N 340 (362)
Q Consensus 340 ~ 340 (362)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
No 167
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=6.7e-49 Score=356.84 Aligned_cols=202 Identities=22% Similarity=0.361 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999865543 2467999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+ .|+++|+.+.. ... .+++.++++.+++.+.. .+.+.+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999999885 59999996521 111 23345566666664433 344567899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|+++||||||++||+.+++.+.+.+++.. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999999887 9999999999999875
No 168
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-48 Score=363.90 Aligned_cols=220 Identities=24% Similarity=0.453 Sum_probs=187.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~~ 187 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 59999999999753 59999999999999999999999999999999999986 479999999998853 3445
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC---C---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
.++++++|+||++.+|+.|+.+|+.+... . .++++.++++.+++.+.+. ...+..+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 66788999999999888899999975321 1 1233455666666654332 234566788999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe---------CCEEEEe
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS---------YGLIEEF 331 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~---------~G~i~~~ 331 (362)
+|||||+++|++|||||||++||+.+++.+.+.|.+..+++|||++||+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987667899999999999887 99999998 8999999
Q ss_pred cChhHHhhcCCc
Q 018040 332 DSPTRLLENKSS 343 (362)
Q Consensus 332 g~~~~l~~~~~~ 343 (362)
|+++++.+++..
T Consensus 241 ~~~~~~~~~~~~ 252 (264)
T PRK14243 241 DRTEKIFNSPQQ 252 (264)
T ss_pred CCHHHHHhCCCc
Confidence 999999876543
No 169
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.6e-48 Score=363.10 Aligned_cols=216 Identities=27% Similarity=0.403 Sum_probs=184.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC---------
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI--------- 184 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~--------- 184 (362)
+.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 469999999999753 599999999999999999999999999999999999999999999999987532
Q ss_pred ----CHHHHhcCcEEEcCCCCCCcc-cHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCC
Q 018040 185 ----GLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251 (362)
Q Consensus 185 ----~~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~ 251 (362)
....++++++|+||++.+++. |++||+.+.. ... .+++.++++.+++.+.. .+..+.
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcc
Confidence 123567789999999999875 9999986421 111 23456677777765432 133456
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
+||||||||++|||||+++|+++||||||++||+.+++.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 789999999999999999999999999999999999999999998865 47999999999999987 9999999999999
Q ss_pred EecChhHHhhcC
Q 018040 330 EFDSPTRLLENK 341 (362)
Q Consensus 330 ~~g~~~~l~~~~ 341 (362)
+.|+++++...+
T Consensus 232 ~~~~~~~~~~~~ 243 (257)
T PRK10619 232 EEGAPEQLFGNP 243 (257)
T ss_pred EeCCHHHhhhCc
Confidence 999999987654
No 170
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-48 Score=370.05 Aligned_cols=216 Identities=27% Similarity=0.429 Sum_probs=181.7
Q ss_pred cEEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHH
Q 018040 115 EVDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~ 187 (362)
.++++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 3599999999999999999999999999999999999999999999999998643 234
Q ss_pred HHhcCcEEEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 188 DLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 188 ~~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
..++.++|+||++ .+|+.|+.+|+.+.. ... .+.+.++++.+++.. ......+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 5677899999998 467779999996421 122 233456666666642 123445567899999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
||++|||||+.+|++|||||||++||+.++..+.+.|++.. ++.|||++||+++.+.. ||||++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998864 47899999999999887 99999999999999999998
Q ss_pred Hhhc
Q 018040 337 LLEN 340 (362)
Q Consensus 337 l~~~ 340 (362)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 7653
No 171
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-48 Score=366.81 Aligned_cols=212 Identities=26% Similarity=0.344 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 59999999999753 5999999999999999999999999999999999999999999999999987777777788899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-----------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-----------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+||++.++.. |+.+|+.+... ..++++.++++.+++.+.. .....+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA-----------HRLVDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCCHHHHHHHH
Confidence 99999877654 99999964210 1123456677777764433 3334568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.+++.+.+.|.+.. + ++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998864 3 7899999999999976 99999999999999999988764
No 172
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-49 Score=358.24 Aligned_cols=203 Identities=26% Similarity=0.304 Sum_probs=172.9
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
++++|++++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997521 369999999999999999999999999999999999999999999999998753 35679
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+|+||++.+|+ .|+++|+.+.. .. ..+++.++++.+++.+..+ ....+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHH
Confidence 99999999887 59999986421 11 1244566777777654433 334568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEe--CCEEEEecCh
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLS--YGLIEEFDSP 334 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~--~G~i~~~g~~ 334 (362)
||+.+|+++||||||++||+.+++.+.+.+++.. .++|||++||+++.+.. ||++++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998763 37899999999998876 99999999 7999988764
No 173
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-48 Score=352.21 Aligned_cols=199 Identities=22% Similarity=0.380 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
++++||+++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997642 3699999999999999999999999999999999999999999999998 5
Q ss_pred cEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
|+|+||++.+|+.|++||+.+......++..++++.+++.+++...+.++++.+.+.+.+||+|||||++|||||+.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765555556777888889988899888889999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 273 VLVLDEATASVDTATDNLIQH-TLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~-~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
++||||||++||+.+.+.+.+ .+++.. ++.|||++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999988887 455543 4689999999999988899999999985
No 174
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-48 Score=367.41 Aligned_cols=215 Identities=26% Similarity=0.408 Sum_probs=183.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999643346999999999999999999999999999999999999999999999999997766667888999
Q ss_pred EEcCCCC--CCcccHHhhcCcCC---CCCHH----HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDPT--MFEGSVHNNLDPLE---EYADE----EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~~--l~~~tv~enl~~~~---~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++. ++..|+++|+.+.. ....+ .+.++++.+++.+. +...+.+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHHHH
Confidence 9999983 44679999996521 12222 34556666666443 33445678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|++|||||||++||+.+++.+.+.|++.. + ++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998864 3 4899999999998877999999999999999999887654
No 175
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.8e-49 Score=356.31 Aligned_cols=200 Identities=29% Similarity=0.421 Sum_probs=170.2
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++|++++|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975323599999999999999999999999999999999999999999999999998776666778889999
Q ss_pred cCCCC--CCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 197 PQDPT--MFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 197 ~Q~~~--l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
||++. ++..|+++|+.+.. ... .+++.++++.+++.+. +.+.+.+||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 99984 55679999986521 111 2334556666665433 3445567899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
+.+|+++||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998764 47899999999999988 99999999985
No 176
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.2e-48 Score=357.22 Aligned_cols=203 Identities=26% Similarity=0.377 Sum_probs=171.5
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 190 (362)
++++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 35999999999999999999999999999999999999999999999999987765433 33
Q ss_pred -cCcEEEcCCCCCCc-ccHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 191 -SRLSIIPQDPTMFE-GSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 191 -~~i~~v~Q~~~l~~-~tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+.++|+||++.+|+ .|++||+.+. .... .+++.++++.+++.+. ....+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 67999999998886 5999999642 1111 2334566666665433 3344567899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEE
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIE 329 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~ 329 (362)
+|||||+.+|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 378999999999998779999999999985
No 177
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-48 Score=360.02 Aligned_cols=218 Identities=26% Similarity=0.415 Sum_probs=185.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCC-CCCHHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDIS-SIGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~-~~~~~~ 188 (362)
.++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 5899999999975 3599999999999999999999999999999999999986 5999999999885 334556
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCC---CC-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
+++.++|+||++.+|+.|+.+|+.+.. .. . .+++.++++.+++.+.+ ...+...+.+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence 778899999999999899999997431 11 1 12344556666665432 234455677899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
++|||||+.+|+++||||||++||+.+...+.+.|++..+++|||++||+++.+.. |||+++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999987667899999999999887 99999999999999999999876
Q ss_pred cC
Q 018040 340 NK 341 (362)
Q Consensus 340 ~~ 341 (362)
.+
T Consensus 234 ~~ 235 (249)
T PRK14253 234 NP 235 (249)
T ss_pred CC
Confidence 53
No 178
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-48 Score=360.24 Aligned_cols=212 Identities=22% Similarity=0.329 Sum_probs=179.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC------CCHHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS------IGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~------~~~~~ 188 (362)
.++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 2 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 37899999999753 59999999999999999999999999999999999999999999999998731 12345
Q ss_pred HhcCcEEEcCCCCCCcc-cHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~-tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+++.++|+||++.+|+. |+.+|+... .... .+++.++++.+++.+. ++..+.+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY-----------ADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHH
Confidence 67789999999998875 999998531 1111 2334555666665443 33445678999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|++|||||+.+|+++||||||++||+.++..+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998865 47999999999999976 999999999999999999887
Q ss_pred hh
Q 018040 338 LE 339 (362)
Q Consensus 338 ~~ 339 (362)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 54
No 179
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-48 Score=363.64 Aligned_cols=220 Identities=26% Similarity=0.400 Sum_probs=187.9
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IG 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~ 185 (362)
.+.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 3469999999999753 599999999999999999999999999999999999874 89999999999864 23
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
...+++.++|+||++.+|+.|+++|+.+.. .. . .+++.++++.+++.+.+. +..+..+.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHH
Confidence 445678899999999999889999996421 11 1 234566677777654322 34466778899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++|||||+++|+++||||||++||+.++..+.+.+++..++.|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HhhcC
Q 018040 337 LLENK 341 (362)
Q Consensus 337 l~~~~ 341 (362)
+...+
T Consensus 254 ~~~~~ 258 (272)
T PRK14236 254 LFTSP 258 (272)
T ss_pred HhcCC
Confidence 87654
No 180
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.4e-48 Score=345.47 Aligned_cols=178 Identities=34% Similarity=0.547 Sum_probs=162.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++..+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999976433599999999999999999999999999999999999999999999999987654 4566788999
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
+||++.+|+.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999987 34589999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 276 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
|||||++||+.+++.+.+.+++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998876689999999999998779999999999998754
No 181
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-48 Score=366.18 Aligned_cols=220 Identities=25% Similarity=0.444 Sum_probs=186.6
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--C
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--G 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~ 185 (362)
...|+++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 37 ~~~l~i~~l~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECCE--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 3469999999999753 59999999999999999999999999999999999997 6899999999988542 3
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
...++++++|+||++.+|+.|+.+|+.+.. .. ..+++.++++.+++.+.+. ..+++++.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 445678899999999988889999996421 11 2345667777777653322 2345567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEE-EEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVL-LLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~-vl~~G~i~~~g~~~~l 337 (362)
|++|||||+++|++|||||||++||+.+++.+.+.|++..++.|||++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987666899999999999887 99975 5799999999999998
Q ss_pred hhcC
Q 018040 338 LENK 341 (362)
Q Consensus 338 ~~~~ 341 (362)
..++
T Consensus 268 ~~~~ 271 (285)
T PRK14254 268 FENP 271 (285)
T ss_pred HhCc
Confidence 7654
No 182
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-48 Score=363.74 Aligned_cols=212 Identities=24% Similarity=0.382 Sum_probs=183.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECCE--EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 37899999999753 5999999999999999999999999999999999999999999999999987766667777899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-----------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-----------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+||++.+++. |+.+|+.+... ...+++.++++.+++.+. ....+.+||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHH
Confidence 99999988865 99999875310 012345566666665433 33456678999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
||||++.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998764 47899999999999887 99999999999999999998865
No 183
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-48 Score=366.09 Aligned_cols=215 Identities=24% Similarity=0.381 Sum_probs=184.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999754345899999999999999999999999999999999999999999999999997777777888999
Q ss_pred EEcCCCC-CC-cccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDPT-MF-EGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~~-l~-~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++. +| ..|+.+|+.+... .. .+++.++++.+++.+.. ...+.+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHH
Confidence 9999985 44 4588999865311 11 23455667777765433 3345678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|++.+|++|||||||++||+.+++.+.+.+++.. .++|+|++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998864 37899999999998877999999999999999999988654
No 184
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-48 Score=368.36 Aligned_cols=215 Identities=26% Similarity=0.372 Sum_probs=181.4
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHH
Q 018040 116 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~~ 188 (362)
++++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997532 3599999999999999999999999999999999999999999999999998653 2355
Q ss_pred HhcCcEEEcCCC--CCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+++.|+|+||++ .+|+.|+++|+.+.. .... +.+.++++.+++.+ ......+.+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 778899999997 577789999996421 1222 22345566666542 1234456679999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998764 47899999999999977 999999999999999999888
Q ss_pred hhc
Q 018040 338 LEN 340 (362)
Q Consensus 338 ~~~ 340 (362)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 653
No 185
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-48 Score=363.64 Aligned_cols=230 Identities=25% Similarity=0.376 Sum_probs=191.9
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-C----CccEEEECCEeCCCCCHHH
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-P----TAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p----~~G~I~i~g~~i~~~~~~~ 188 (362)
++++|++..|.... ..+++||||++++||++||||+|||||||+.++|+|+++ | .+|+|.++|+++..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68999999996532 358999999999999999999999999999999999998 4 5799999999999888764
Q ss_pred ---Hh-cCcEEEcCCCC--CCc-ccHHhhc----CcCCCC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 189 ---LR-SRLSIIPQDPT--MFE-GSVHNNL----DPLEEY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 189 ---~r-~~i~~v~Q~~~--l~~-~tv~enl----~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
+| +.|+||||+|. |-+ .||.+.+ ...... ..++..++|+.+++.+. +..+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 34 36999999984 222 2555443 221111 13456778888888642 2345556778
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++. .+.|+|+||||+..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999865 47999999999999988 9999999999999
Q ss_pred EecChhHHhhcCCcHHHHHHHHHh
Q 018040 330 EFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 330 ~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|.|+.++++.++...|++.+-...
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~s~ 257 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLNSL 257 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHHhC
Confidence 999999999999889987765443
No 186
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-48 Score=365.20 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=184.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++. .+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 469999999999753 599999999999999999999999999999999999999999999999998777766777889
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC--C------C---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE--E------Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~--~------~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+|+||++.+|. .|+++|+.+.. . . ..+++.++++.+++.+. ....+.+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHHH
Confidence 99999998875 59999986421 0 1 12345566776666433 3445677899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+||||++.+|+++||||||++||+.+++.+.+.|.+.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998864 37899999999998877 9999999999999999999886
Q ss_pred h
Q 018040 339 E 339 (362)
Q Consensus 339 ~ 339 (362)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
No 187
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-48 Score=358.42 Aligned_cols=213 Identities=26% Similarity=0.398 Sum_probs=181.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 193 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 48899999999753 5999999999999999999999999999999999999999999999999987766543 46789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC----CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++.+|+. |+.||+.+... .. ...+.++++.+++. ...+....+||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-----------HLRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-----------HHhhcchhhCCHHHHHHHHHH
Confidence 999999988874 99999975321 11 12344455555443 334555677999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||++.+|++|||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998764 47899999999988877 999999999999999999998653
No 188
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-48 Score=361.39 Aligned_cols=213 Identities=25% Similarity=0.362 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 48899999999753 5999999999999999999999999999999999999999999999999987777666778899
Q ss_pred EEcCCCCC-CcccHHhhcCcCCC---C----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTM-FEGSVHNNLDPLEE---Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l-~~~tv~enl~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+ +..|++||+.+... . .++.+.++++.+++.+. ....+.+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 99999987 45699999865321 1 12345566777766433 334456789999999999999
Q ss_pred hc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 267 LL------KKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 267 l~------~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|+ .+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998764 47899999999999986 999999999999999999988
Q ss_pred hhc
Q 018040 338 LEN 340 (362)
Q Consensus 338 ~~~ 340 (362)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 653
No 189
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-48 Score=358.43 Aligned_cols=214 Identities=23% Similarity=0.331 Sum_probs=180.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 193 (362)
.++++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 5899999999975 35999999999999999999999999999999999999999999999999987766544 56789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC-CCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE-YAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~-~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+|+||++.+|+. |+++|+.+... ... +.+.++++.++ ++.......+.+||||||||++|||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFP----------RLHERRIQRAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHH----------HHHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 999999998875 99999965321 111 12222233221 122334456678999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. |||+++|++|++++.|+++++..+
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998764 47999999999998877 999999999999999999998643
No 190
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.3e-48 Score=355.29 Aligned_cols=200 Identities=24% Similarity=0.344 Sum_probs=171.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~~ 192 (362)
++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 3599999999999999999999999999999999999999999999999998766532 35678
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.+|+ .|+++|+.+.. .. ..+++.++++.+++.+..++ ...+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999886 59999986421 11 13456677777777554333 3356899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
|||+.+|+++||||||++||+.++..+.+.+++.. +++|+|++||+++.+.. ||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998864 47999999999999987 99999999985
No 191
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.6e-48 Score=354.45 Aligned_cols=201 Identities=25% Similarity=0.351 Sum_probs=171.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~~ 192 (362)
++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999653 359999999999999999999999999999999999999999999999999876543 246778
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.+|+. |+++|+.+.. ... .+++.++++.+++.+..+ ..+.+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHH
Confidence 9999999998874 9999996421 111 234566677777654333 33456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
|||+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998864 57999999999999987 999999999974
No 192
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-48 Score=347.39 Aligned_cols=215 Identities=25% Similarity=0.412 Sum_probs=188.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
.++++|++..|+.. .+|++|||++++||+++|+||||||||||+++|+|+.+|.+|+|.++|+|++..++++. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 58999999999864 59999999999999999999999999999999999999999999999999999988765 6679
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCC-CH-H----HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEY-AD-E----EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~-~~-~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+||||.-.+|+. ||.||+...... .+ + .++++.+ .+| .|....++++.+|||||+|.+|||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~---------lFP-~Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYE---------LFP-RLKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHH---------HCh-hHHHHhcCcccCCChHHHHHHHHHHH
Confidence 999999999975 999999753211 11 1 1222222 223 36777888899999999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|+.+|++|+|||||.||-|.-.+.|.+.++++.+ +.||++|.++...+.. +||.+||++|+|+.+|+.+++.+++
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999998763 5799999999999887 9999999999999999999998763
No 193
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-48 Score=366.48 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=188.0
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--C
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--G 185 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~ 185 (362)
...++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 37 ~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 3469999999999753 59999999999999999999999999999999999864 4999999999988543 2
Q ss_pred HHHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 186 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
...+|++++|+||++.+|+.|+.||+.+.. .. . .+.+.++++.+++.+.+ .......+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHH
Confidence 234677899999999999889999997531 11 1 23345566666654322 223455677899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. |||+++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999887667899999999999887 99999999999999999999
Q ss_pred HhhcCCcHHHH
Q 018040 337 LLENKSSSFAQ 347 (362)
Q Consensus 337 l~~~~~~~~~~ 347 (362)
+.+++...+.+
T Consensus 268 ~~~~~~~~~~~ 278 (286)
T PRK14275 268 LFTNPKDRMTE 278 (286)
T ss_pred HHhCCCcHHHH
Confidence 98765444433
No 194
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-48 Score=360.86 Aligned_cols=218 Identities=25% Similarity=0.421 Sum_probs=184.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~~ 187 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999753 599999999999999999999999999999999999974 69999999998853 3344
Q ss_pred HHhcCcEEEcCCCCCCc-ccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 188 DLRSRLSIIPQDPTMFE-GSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~-~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
.+++.++|++|++.+|+ .|+++|+.+.. . .. ++.+.++++.+++.+.+ .......+.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence 67788999999999887 49999986421 1 11 23445667777764322 2234556778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe------CCEEEEe
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS------YGLIEEF 331 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~------~G~i~~~ 331 (362)
||++|||||+.+|+++||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999887667899999999999876 99999997 8999999
Q ss_pred cChhHHhhcC
Q 018040 332 DSPTRLLENK 341 (362)
Q Consensus 332 g~~~~l~~~~ 341 (362)
|++++++..+
T Consensus 235 ~~~~~~~~~~ 244 (258)
T PRK14241 235 DDTEKIFSNP 244 (258)
T ss_pred CCHHHHHhCc
Confidence 9999987653
No 195
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-50 Score=349.57 Aligned_cols=215 Identities=25% Similarity=0.385 Sum_probs=185.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~ 192 (362)
+.+..+|+.++|+.. .++++|||++++||+||+.|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |..
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 358899999999754 59999999999999999999999999999999999999999999999999999998765 445
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCCCC---------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLEEY---------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|||+||++.+|.. ||+|||...-+. ..+++.+.++.+++. ...+..+.+||||||+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-----------hlr~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-----------HLRDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-----------HHhcCcccccccchHHHHH
Confidence 9999999999976 999999632111 112244555555443 3445567789999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||||+.+|++++||||++|+||.+...|+++++.++ +|..|++.-|+..+... |||.+++.+|+|...|+|+++.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998875 57899999999976555 999999999999999999999987
Q ss_pred C
Q 018040 341 K 341 (362)
Q Consensus 341 ~ 341 (362)
+
T Consensus 230 ~ 230 (243)
T COG1137 230 E 230 (243)
T ss_pred h
Confidence 4
No 196
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-48 Score=365.71 Aligned_cols=215 Identities=23% Similarity=0.350 Sum_probs=184.8
Q ss_pred cEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
.++++|++++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 23589999999999999999999999999999999999999999999999998776666778899
Q ss_pred EEEcCCCC--CCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPT--MFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~--l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++. ++..|+.+|+.+.. .... +++.++++.+++.+..+ ..+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999983 55679999997421 1222 23456677777654433 34567899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+.+|++|||||||++||+.+++.+.+.+++..+ +.|||++||+++.+..||+|++|++|++++.|++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987643 7899999999999878999999999999999999998754
No 197
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-48 Score=361.21 Aligned_cols=220 Identities=28% Similarity=0.436 Sum_probs=186.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~~ 187 (362)
.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. ....
T Consensus 7 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECCe--EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 69999999999753 599999999999999999999999999999999999985 48999999998853 2334
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|++||+.+.. ... ++.+.++++.+++.+.+. ...+..+.+|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHHH
Confidence 5677899999999999899999996421 111 233456677777754322 2345567789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe-----CCEEEEecC
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS-----YGLIEEFDS 333 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~-----~G~i~~~g~ 333 (362)
|++|||||+++|+++||||||++||+.++..+.+.|++..+++|||++||+++.+.. |||+++|+ +|++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999987667899999999999987 99999998 599999999
Q ss_pred hhHHhhcCCc
Q 018040 334 PTRLLENKSS 343 (362)
Q Consensus 334 ~~~l~~~~~~ 343 (362)
++++.+.+..
T Consensus 238 ~~~~~~~~~~ 247 (259)
T PRK14260 238 TTQIFSNPLD 247 (259)
T ss_pred HHHHhcCCCC
Confidence 9999765443
No 198
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-47 Score=362.52 Aligned_cols=223 Identities=22% Similarity=0.390 Sum_probs=187.9
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI-- 184 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~-- 184 (362)
....|+++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...
T Consensus 17 ~~~~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCceEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 34479999999999753 599999999999999999999999999999999999863 589999999988542
Q ss_pred CHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC---C---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 185 GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 185 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
....+++.++|+||++.+|+.|+.+|+.+... . .++.+.++++.+++.+.+ .......+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHH
Confidence 33456788999999999988899999965321 1 123345566666664433 2234566788999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe---------CCEE
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS---------YGLI 328 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~---------~G~i 328 (362)
||++|||||+.+|++|||||||++||+.++..+.+.|++..+++|||++||+++.+.. |||+++|+ +|++
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999987667899999999999987 99999998 8999
Q ss_pred EEecChhHHhhcCCc
Q 018040 329 EEFDSPTRLLENKSS 343 (362)
Q Consensus 329 ~~~g~~~~l~~~~~~ 343 (362)
++.|+++++..++..
T Consensus 248 ~~~g~~~~~~~~~~~ 262 (274)
T PRK14265 248 VEFSPTEQMFGSPQT 262 (274)
T ss_pred EEeCCHHHHHhCCCC
Confidence 999999999876543
No 199
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-48 Score=366.83 Aligned_cols=215 Identities=24% Similarity=0.380 Sum_probs=184.1
Q ss_pred cEEEEEEEEEeCCC----CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHH
Q 018040 115 EVDIHGLQVRYAPH----LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~----~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~ 189 (362)
.++++|++++|++. .+++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999742 235999999999999999999999999999999999999999999999999986543 3456
Q ss_pred hcCcEEEcCCCC--CCcccHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 190 RSRLSIIPQDPT--MFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 190 r~~i~~v~Q~~~--l~~~tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
+++++|+||++. ++..|+.+|+.+... .. ++++.++++.+++.+..++ .+.+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 788999999984 566689999975321 12 2445667777777654443 345689999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
++|||||+.+|+++||||||++||+.++..+.+.++++. .+.|||++||+++.+..|||+++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998864 378999999999998779999999999999999999986
Q ss_pred hc
Q 018040 339 EN 340 (362)
Q Consensus 339 ~~ 340 (362)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 200
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-48 Score=365.69 Aligned_cols=212 Identities=27% Similarity=0.385 Sum_probs=179.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~~i 193 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+.+
T Consensus 2 l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCCc--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 7899999999753 5999999999999999999999999999999999999999999999999984 22334567889
Q ss_pred EEEcCCCC--CCcccHHhhcCcC---CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPT--MFEGSVHNNLDPL---EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~--l~~~tv~enl~~~---~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++. ++..|+.+|+.+. ..... +++.++++.+++.+. ....+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHHH
Confidence 99999985 4566899998642 11122 234456666666433 2344567999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+.+|++|||||||++||+.++..+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998864 47899999999999976 999999999999999999888654
No 201
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-48 Score=360.63 Aligned_cols=213 Identities=22% Similarity=0.358 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGGL--LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECCE--EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 59999999999753 59999999999999999999999999999999999999999999999999887665544 4469
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC----------------C--C----HHHHHHHHHHcCCChHHHhccccchhhhccCC
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE----------------Y--A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~----------------~--~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g 250 (362)
+|+||++.+|+. |+++|+.+... . . .+.+.++++.++ ++...+..+
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG-----------LLEHANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCC-----------hhhhhhCCh
Confidence 999999999875 99999875210 0 0 012333344444 344455667
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|.+.. + ++|||++||+++.+.. ||++++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 7899999999999999999999999999999999999999999998764 3 7899999999999977 99999999999
Q ss_pred EEEecChhHHhhc
Q 018040 328 IEEFDSPTRLLEN 340 (362)
Q Consensus 328 i~~~g~~~~l~~~ 340 (362)
+++.|+++++.+.
T Consensus 232 i~~~~~~~~~~~~ 244 (255)
T PRK11300 232 PLANGTPEEIRNN 244 (255)
T ss_pred EEecCCHHHHhhC
Confidence 9999999988654
No 202
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-48 Score=358.95 Aligned_cols=224 Identities=23% Similarity=0.380 Sum_probs=184.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCC--CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISS--IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~--~~~~ 187 (362)
.++++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECCE--EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 48899999999753 5999999999999999999999999999999999999874 8999999999864 2334
Q ss_pred HHhcCcEEEcCCCCCCcc-cHHhhcCcCC---CC-CHHH----HHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 188 DLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EY-ADEE----IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~-~~~~----~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
.+++.++|+||++.+|+. |+.+|+.+.. .. .+++ ..+.++.+++.+. +.......+.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-------VKDRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-------hhhhhcCCcccCCHHHH
Confidence 567789999999998874 9999996421 11 2222 2333444544322 12233456778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||++|||||+++|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999987 999999999999999999999
Q ss_pred hhcCCcHHHH
Q 018040 338 LENKSSSFAQ 347 (362)
Q Consensus 338 ~~~~~~~~~~ 347 (362)
+.++...+..
T Consensus 235 ~~~~~~~~~~ 244 (252)
T PRK14272 235 FTNPRDERTE 244 (252)
T ss_pred HhCcCcHHHH
Confidence 8765444433
No 203
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.1e-48 Score=372.11 Aligned_cols=203 Identities=24% Similarity=0.370 Sum_probs=174.8
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+++++||+||++.++
T Consensus 2 ~y~~~--~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGDF--KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCCe--eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 56543 59999999999999999999999999999999999999999999999999865 3446678899999999988
Q ss_pred cc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 204 EG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 204 ~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
+. |++||+.+.. ... .+++.++++.+++.+.. +....+||||||||++|||||+++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 75 9999996521 111 23456677777765433 33446689999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 276 LDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||||+|||+.+++.+.+.+++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998864 57999999999999987 999999999999999999998654
No 204
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.8e-48 Score=356.93 Aligned_cols=210 Identities=24% Similarity=0.386 Sum_probs=178.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 194 (362)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999987766544 456899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC---CC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE---YA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~---~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
|+||++.+|+. |+++|+.+... .. .+...++++.++ ++.....+...+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999876 99999964211 11 112233333332 13334556677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
+|+++||||||++||+.+++.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999988643 7899999999999987 999999999999999999887
No 205
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-48 Score=363.27 Aligned_cols=220 Identities=27% Similarity=0.378 Sum_probs=186.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCC-HHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIG-LHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~-~~~ 188 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAGK--TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECCE--EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 58999999999753 599999999999999999999999999999999999986 6999999999987553 345
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCC----CCCHHH----HHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLE----EYADEE----IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~----~~~~~~----~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
++++++|+||++.+|+.|+++|+.+.. ....++ +.+.++.+++.+.. .+.+.+.+.+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHHH
Confidence 678899999999999899999997421 122222 23455666664322 234456678899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999887656899999999999887 99999999999999999999987
Q ss_pred cCCc
Q 018040 340 NKSS 343 (362)
Q Consensus 340 ~~~~ 343 (362)
.+..
T Consensus 252 ~~~~ 255 (276)
T PRK14271 252 SPKH 255 (276)
T ss_pred CcCc
Confidence 6433
No 206
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-48 Score=367.56 Aligned_cols=217 Identities=24% Similarity=0.345 Sum_probs=180.7
Q ss_pred ccEEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----C-C
Q 018040 114 GEVDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----I-G 185 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~---~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~-~ 185 (362)
+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997542 249999999999999999999999999999999999999999999999998752 1 3
Q ss_pred HHHHhcCcEEEcCCC--CCCcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 186 LHDLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~~--~l~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
...+|+.++|+||++ .+|+.|+++|+.+.. .... +.+.++++.+++. +...++.+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~----------~~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP----------EDYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhHhcCChhhCCHH
Confidence 456778899999998 456779999996531 1222 2233455555542 12334556789999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998764 37899999999999876 99999999999999999
Q ss_pred hhHHhhc
Q 018040 334 PTRLLEN 340 (362)
Q Consensus 334 ~~~l~~~ 340 (362)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9887653
No 207
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=360.39 Aligned_cols=222 Identities=23% Similarity=0.371 Sum_probs=188.4
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC---
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--- 183 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--- 183 (362)
..+.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 13 ~~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 45679999999999753 599999999999999999999999999999999999875 79999999987642
Q ss_pred -CCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC---C-----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 184 -IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 184 -~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
.....+++.++|+||++.+|+.|+++|+.+.. . ..++++.++++.+++.+. +....++.+.+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCC
Confidence 23345678899999999999889999996421 1 113455667777766432 2334556678899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||+||++|||||+.+|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987667899999999999976 99999999999999999
Q ss_pred hhHHhhcCC
Q 018040 334 PTRLLENKS 342 (362)
Q Consensus 334 ~~~l~~~~~ 342 (362)
++++..++.
T Consensus 244 ~~~~~~~~~ 252 (265)
T PRK14252 244 TDTIFIKPK 252 (265)
T ss_pred HHHHHhCCC
Confidence 999876543
No 208
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-48 Score=360.29 Aligned_cols=204 Identities=26% Similarity=0.353 Sum_probs=177.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 11 ~~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 359999999999753 5999999999999999999999999999999999999999999999998753 456789
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
+|+||++.+|+ .|++||+.+.. ...++++.++++.+++.+.. ++.+.+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999887 59999997532 12245567778887775433 3445678999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
+++||||||++||+.++..+.+.|.+.. .++|||++||+++.+.. ||+|++|++|++++.++.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998753 37899999999999876 9999999999999988754
No 209
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=5.6e-48 Score=354.44 Aligned_cols=206 Identities=23% Similarity=0.295 Sum_probs=174.9
Q ss_pred cEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H
Q 018040 115 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 189 (362)
.++++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999997532 24899999999999999999999999999999999999999999999999987766543 2
Q ss_pred -hcCcEEEcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 190 -RSRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 190 -r~~i~~v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
++.++|+||++.+++. |+.+|+.+. .... .+++.++++.+++.+..++ .+.+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHH
Confidence 3579999999998875 999998642 1111 3455667777777554433 345689999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVIDSDMVLLLSYGLIEEF 331 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~ 331 (362)
++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + +.|||++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998864 3 7899999999998877999999999999764
No 210
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-47 Score=357.64 Aligned_cols=222 Identities=23% Similarity=0.396 Sum_probs=189.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++||++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +..
T Consensus 3 ~l~~~~v~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDDA--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 48899999999753 59999999999999999999999999999999999864 4899999999998643 345
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.++++++|+||++.+|+.|+.+|+.+.. . .. .+++.++++.+++.+.+. ..+++.+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHHH
Confidence 6778899999999999889999997421 1 11 234556777788765433 2245667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|++|||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987668899999999999988 9999999999999999999997
Q ss_pred hcCCcHH
Q 018040 339 ENKSSSF 345 (362)
Q Consensus 339 ~~~~~~~ 345 (362)
..+...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 6654444
No 211
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.2e-48 Score=377.85 Aligned_cols=213 Identities=19% Similarity=0.264 Sum_probs=178.0
Q ss_pred EEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE----eCCCCCHHH---Hh-cC
Q 018040 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI----DISSIGLHD---LR-SR 192 (362)
Q Consensus 121 l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~----~i~~~~~~~---~r-~~ 192 (362)
+.++|+.. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|. ++...+... +| ++
T Consensus 30 ~~~~~g~~--~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 30 ILDETGLV--VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHhhCCE--EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 33455433 5899999999999999999999999999999999999999999999996 555554443 33 57
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.+|+ .|+++|+.+.. ... .+++.++++.+++.++.+. .+.+||||||||++||
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LA 176 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLA 176 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence 999999999997 59999997531 112 2345677888887655433 3456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||+++|+||||||||++||+.++..+++.|.+.. .++|+|+|||+++++.. ||||++|++|++++.|++++++.++
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 99999999999999999999999999999998764 37999999999999876 9999999999999999999998765
Q ss_pred CcHHH
Q 018040 342 SSSFA 346 (362)
Q Consensus 342 ~~~~~ 346 (362)
...|.
T Consensus 257 ~~~~~ 261 (382)
T TIGR03415 257 ANDYV 261 (382)
T ss_pred chHHH
Confidence 44444
No 212
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=359.13 Aligned_cols=223 Identities=22% Similarity=0.362 Sum_probs=189.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~~ 187 (362)
.+.+++++++|++. ++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 8 ~~~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGNF--MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 48899999999753 599999999999999999999999999999999999986 799999999998643 333
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCC------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
.+++.++|+||++.+|..|+.||+.+... ...+++.++++.+++.+.+.. ..++.+.+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 56778999999999998899999975321 113456778888887554322 23456778999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe--------CCEEEEec
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS--------YGLIEEFD 332 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~--------~G~i~~~g 332 (362)
+|||||+++|++|||||||++||+.++..+.+.+++..+++|+|++||+++.+.. ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999987667899999999999877 99999996 89999999
Q ss_pred ChhHHhhcCCcHHH
Q 018040 333 SPTRLLENKSSSFA 346 (362)
Q Consensus 333 ~~~~l~~~~~~~~~ 346 (362)
+++++++.+...+.
T Consensus 239 ~~~~~~~~~~~~~~ 252 (261)
T PRK14263 239 PTAQIFQNPREQLT 252 (261)
T ss_pred CHHHHHhCCCcHHH
Confidence 99999876443343
No 213
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.9e-48 Score=353.93 Aligned_cols=197 Identities=30% Similarity=0.406 Sum_probs=166.4
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++++|+
T Consensus 1 ~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECCE--EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 368999999753 5999999999999999999999999999999999999999999999998763 457789999
Q ss_pred cCCCCC---CcccHHhhcCcCCC-----------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 197 PQDPTM---FEGSVHNNLDPLEE-----------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 197 ~Q~~~l---~~~tv~enl~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
||++.+ ++.|++||+.+... ...+++.++++.+++.+.. ...+.+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHH
Confidence 999876 45799999864211 0123456677777665433 3345678999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998864 57899999999999987 9999999986 55543
No 214
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-48 Score=349.86 Aligned_cols=200 Identities=28% Similarity=0.374 Sum_probs=171.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999753 2 39999999999999999999999999999999999999999999999876543 3577999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCC-------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+. |++||+.+... ..++++.++++.+++.+..+. .+.+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-----------LPGELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHH
Confidence 9999999875 99999964321 123456677777777554443 3456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|+++||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. |||+++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999998864 37899999999999987 9999999999998754
No 215
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.3e-48 Score=340.41 Aligned_cols=172 Identities=33% Similarity=0.571 Sum_probs=159.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++...++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
++|++.+|+.|+++|+ ||||||||++|||||+++|+++|
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999987 69999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 276 LDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
|||||++||+.++..+.+.+++.. +++|+|++||+++.+..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998864 47899999999998877999999999974
No 216
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-48 Score=351.47 Aligned_cols=200 Identities=24% Similarity=0.396 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 4789999999743 59999999999999999999999999999999999999999999999987642 45678999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+++. |+++|+.+.. ... .+++.++++.+++.+.. ...+.+||||||||++|||||
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999986421 111 23455666666654433 334567899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 47899999999999877 9999999999998754
No 217
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1e-47 Score=361.11 Aligned_cols=228 Identities=25% Similarity=0.319 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYAPH-------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 187 (362)
.|+++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 58999999999631 23599999999999999999999999999999999999999999999999998654444
Q ss_pred HHhcCcEEEcCCCC--CCcc-cHHhhcCcC----CCC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 188 DLRSRLSIIPQDPT--MFEG-SVHNNLDPL----EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~--l~~~-tv~enl~~~----~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
..++.++|+||++. +++. |+.+|+.+. ... ..+++.++++.+++.+.. ....+.+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH----------ASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------HhcCchhcCHH
Confidence 55668999999985 4443 788887531 111 124566778888874211 12234568999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||++|||||+++|++|||||||++||+.+++.+.+.|.+.. .+.|||++||+++.+.. |||+++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998864 37899999999999987 99999999999999999
Q ss_pred hhHHhhcCCc-HHHHHHHHH
Q 018040 334 PTRLLENKSS-SFAQLVAEY 352 (362)
Q Consensus 334 ~~~l~~~~~~-~~~~~~~~~ 352 (362)
++++.+.+.. .+.+++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 234 TADVLASPLHELTKRLIAGH 253 (267)
T ss_pred HHHHhcCCCCHHHHHHHHhc
Confidence 9999876433 344555543
No 218
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=5.4e-48 Score=354.20 Aligned_cols=209 Identities=23% Similarity=0.323 Sum_probs=178.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|+++.|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 59999999999753 5999999999999999999999999999999999999999999999999988777767788999
Q ss_pred EEcCCCCCCcccHHhhcCcC----CC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 195 IIPQDPTMFEGSVHNNLDPL----EE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~----~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
|+||++.+|+.|+++|+.+. .. ...+++.++++.+++.+ +.....+.+|||||+||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999988999998642 11 12334556677776642 23345567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEe-CCEEEEecChh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLS-YGLIEEFDSPT 335 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~-~G~i~~~g~~~ 335 (362)
+|+++||||||++||+.+.+.+.+.+++.. .++|+|++||+++.+..||++++|+ ++..+++|+++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998864 3789999999999987799999995 55566777664
No 219
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6.5e-48 Score=360.25 Aligned_cols=211 Identities=24% Similarity=0.342 Sum_probs=182.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGR--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 6899999999753 59999999999999999999999999999999999999999999999999987777777778999
Q ss_pred EcCCCCCC-cccHHhhcCcCCC--------C---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 196 IPQDPTMF-EGSVHNNLDPLEE--------Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 196 v~Q~~~l~-~~tv~enl~~~~~--------~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
+||++.++ ..|+++|+.+... . ..+++.++++.+++.+ .....+.+||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH-----------LADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHHHH
Confidence 99998654 5699999965310 0 1224556666666543 2344556799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||++.+|+++||||||++||+.+...+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998865 47899999999999976 99999999999999999998754
No 220
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-48 Score=363.96 Aligned_cols=213 Identities=25% Similarity=0.374 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i 193 (362)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999743 359999999999999999999999999999999999999999999999999852 2234567889
Q ss_pred EEEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++ .+++.|+.+|+.+.. ... .+++.++++.+++.+.. ...+.+|||||+||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHHH
Confidence 9999997 467789999996421 111 23455677777765432 334567899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+.+|+++||||||++||+.++..+.+.+.++. ++.|||++||+++.+.. ||||++|++|++++.|++++++..
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998865 47899999999999886 999999999999999999998653
No 221
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1e-47 Score=352.37 Aligned_cols=207 Identities=27% Similarity=0.364 Sum_probs=171.5
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHh
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r 190 (362)
++++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999997531 259999999999999999999999999999999999999999999999999876653 4567
Q ss_pred cCcEEEcCCC--CCC-cccHHhhcCcC----C-CCCHHHH----HHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 191 SRLSIIPQDP--TMF-EGSVHNNLDPL----E-EYADEEI----WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 191 ~~i~~v~Q~~--~l~-~~tv~enl~~~----~-~~~~~~~----~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
+.++|+||++ .++ ..|+++|+.+. . ...++.. .+.++.+++. +...+..+.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 8899999998 344 46999998531 1 1111111 2444555442 1234556677999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
||++|||||+.+|++|||||||++||+.+++.+.+.|++.. + ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998864 3 7899999999999986 9999999999998754
No 222
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-49 Score=353.53 Aligned_cols=214 Identities=24% Similarity=0.403 Sum_probs=187.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
-+++++++++|++- .+++||||++++||+++|||||||||||++++|+|+|+|++|+|.++|++|+.+++.++ |..|
T Consensus 4 lL~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 47899999999875 59999999999999999999999999999999999999999999999999999998876 4569
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC-------------C------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE-------------E------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~-------------~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
+--||.+.+|+. ||.||+.... . ...++..+.|+.++|.+. .++...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~-----------a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL-----------ADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-----------hcchhhcC
Confidence 999999999976 9999985320 0 112344556666666544 34445668
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|+||++|+.|||||+.+|++|+||||.+||.+.....+.+.|++..+ +.||++|.||++.+.. ||||+||+.|++++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999999998764 4899999999999998 99999999999999
Q ss_pred ecChhHHhhcC
Q 018040 331 FDSPTRLLENK 341 (362)
Q Consensus 331 ~g~~~~l~~~~ 341 (362)
+|+|+++.+++
T Consensus 231 eG~P~eV~~dp 241 (250)
T COG0411 231 EGTPEEVRNNP 241 (250)
T ss_pred cCCHHHHhcCH
Confidence 99999998874
No 223
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.9e-48 Score=352.20 Aligned_cols=203 Identities=28% Similarity=0.343 Sum_probs=172.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~~ 192 (362)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 3599999999999999999999999999999999999999999999999998766543 35778
Q ss_pred cEEEcCCCCCC-cccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMF-EGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~-~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|+||++.++ ..|+++|+.+.. .... +++.++++.+++.+.. ...+.+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHHH
Confidence 99999999875 469999996521 1222 2345666777665433 334567899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
||++.+|++|||||||++||+.+++.+.+.+++.. ++.|+|++||+++.+.. ||||++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998864 47899999999999987 99999999999854
No 224
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=374.13 Aligned_cols=211 Identities=20% Similarity=0.326 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHHhc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDLRS 191 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~ 191 (362)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 667 999999753 33 899999999999999999999999999999999999999999999886421 234577
Q ss_pred CcEEEcCCCCCCc-ccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 192 RLSIIPQDPTMFE-GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 192 ~i~~v~Q~~~l~~-~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+++|+||++.+|+ .|+++|+.+.. ....+++.++++.+++.+..++ .+.+||||||||++|||||+.
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHHHc
Confidence 8999999999986 59999997642 2334567778888877654443 345689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCC
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~ 342 (362)
+|++|||||||++||+.+++.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999987643 6899999999999887 99999999999999999999988764
No 225
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6e-47 Score=358.00 Aligned_cols=211 Identities=24% Similarity=0.327 Sum_probs=186.7
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.+.|+++|+++. + +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 37 ~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 346999999985 2 2599999999999999999999999999999999999999999999988 3
Q ss_pred cEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
++|++|++.+|+.|+++|+.+.......++.+.++.+++.+.+..++.+.++.+++.+.+||||||||++|||||+.+|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999899999997643333445566777788888888888777788888899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 273 VLVLDEATASVDTATDNLIQHTL-GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+|||||||++||+.++..+.+.+ ....++.|||++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999888754 455567899999999999877999999999999999999998764
No 226
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-47 Score=355.74 Aligned_cols=220 Identities=26% Similarity=0.397 Sum_probs=185.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEeCCCC--CHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDISSI--GLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~~--~~~ 187 (362)
.++++|++++|+. +++|+++||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 5899999999975 359999999999999999999999999999999999975 4 589999999988542 234
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
.+++.++|+||++.+|+.|+++|+.+.. . .. ++++.+.++.+++... +.......+.+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHHH
Confidence 5677899999999998889999986421 1 11 2334455666665422 223455667889999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|++|||||+++|+++||||||++||+.+++.+.+.|++..++.|+|++||+++.+.. ||||++|++|++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999887666899999999999977 9999999999999999999998
Q ss_pred hcCCc
Q 018040 339 ENKSS 343 (362)
Q Consensus 339 ~~~~~ 343 (362)
.++..
T Consensus 236 ~~~~~ 240 (252)
T PRK14255 236 LNPKE 240 (252)
T ss_pred cCCCC
Confidence 76543
No 227
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.8e-48 Score=351.11 Aligned_cols=200 Identities=27% Similarity=0.445 Sum_probs=169.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i 193 (362)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECCe--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 4689999999753 59999999999999999999999999999999999999999999999998853 2344567889
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+|+||++.+|+ .|++||+.+.. ... .+++.++++.+++.+. +...+.+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK-----------ADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhhCccccCHHHHHHHHHH
Confidence 99999999886 59999986521 122 1234555666655433 3444567899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
||++.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999987 999999999974
No 228
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.3e-47 Score=349.84 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=183.1
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHHhcC
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDLRSR 192 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~r~~ 192 (362)
.+.|+.|+|++. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999865 469999999999999999999999999999999999999999999999998765432 234567
Q ss_pred cEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
++|++|++.+|+.|+++|+.+......++..++++.+++.+.+...+.++++.++..+.+||||||||++||||++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999998654444555677888888888888788888888888899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 273 VLVLDEATASVDTATDNLIQH--TLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~--~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
++||||||++||+.+++.+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999998887 555443 4689999999999987799999999884
No 229
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-47 Score=357.12 Aligned_cols=221 Identities=25% Similarity=0.427 Sum_probs=187.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCC--CCH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISS--IGL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~--~~~ 186 (362)
+.|+++|++++|++. .+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 369999999999753 5999999999999999999999999999999999999985 8999999998743 233
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCC---CC-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~---~~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
..+++.++|+||++.+|+.|++||+.+.. .. . .+.+.++++.+++.+++. ...++.+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 45678899999999988899999996421 11 1 234556777777654332 234556778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC-----CEEEE
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY-----GLIEE 330 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~-----G~i~~ 330 (362)
||++|||||+++|++|||||||++||+.+++.+.+.+++.. .++|+|++||+++.+.. ||||++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998753 47999999999999987 999999999 99999
Q ss_pred ecChhHHhhcCCc
Q 018040 331 FDSPTRLLENKSS 343 (362)
Q Consensus 331 ~g~~~~l~~~~~~ 343 (362)
.|+++++.+.+..
T Consensus 237 ~~~~~~~~~~~~~ 249 (261)
T PRK14258 237 FGLTKKIFNSPHD 249 (261)
T ss_pred eCCHHHHHhCCCC
Confidence 9999999876543
No 230
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-47 Score=350.46 Aligned_cols=208 Identities=22% Similarity=0.322 Sum_probs=178.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ..++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999742 239999999999999999999999999999999999999999999998875543 2567999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC--C-----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE--E-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~--~-----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+. |+.+|+.+.. . ..++++.++++.+++.+.+++. ...||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARL-----------PGQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCC-----------cccCCHHHHHHHHHHHHH
Confidence 9999998875 9999996421 1 1134566777777765544443 456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+++|+++||||||++||+.+++.+.+.+++.. .++|+|++||+++.+.. ||||++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998764 37899999999999877 999999999999999999998765
No 231
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3e-47 Score=356.21 Aligned_cols=223 Identities=22% Similarity=0.361 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe-----CCCCCHHH-
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID-----ISSIGLHD- 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-----i~~~~~~~- 188 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 59999999999753 59999999999999999999999999999999999999999999999998 76655443
Q ss_pred ---HhcCcEEEcCCCC--CCc-ccHHhhcCc----CCCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 189 ---LRSRLSIIPQDPT--MFE-GSVHNNLDP----LEEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 189 ---~r~~i~~v~Q~~~--l~~-~tv~enl~~----~~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
+++.++|+||++. ++. .|+.+|+.. ..... .+.+.++++.+++.+ +.+++.+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3557999999984 343 478888742 11111 223344555555431 24456678899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
||||||++|||||+.+|++|||||||++||+.+++.+.+.+++..+ +.|||++||+++.+.. ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987542 7899999999999986 999999999999999
Q ss_pred cChhHHhhcCCcHHHHHH
Q 018040 332 DSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 332 g~~~~l~~~~~~~~~~~~ 349 (362)
|+++++..++...|.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQLL 251 (258)
T ss_pred CCHHHHhcCCCCHHHHHH
Confidence 999999876544554433
No 232
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-47 Score=352.96 Aligned_cols=211 Identities=26% Similarity=0.395 Sum_probs=181.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4689999999753 59999999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
++|++.+|.. |+++|+.+.. .. ..+++.++++.+++.+..+. ...+||+|||||++|||||
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANR-----------KPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999999865 9999986421 11 13345667777777554443 3456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
+.+|+++||||||++||+.+++.+.+.+++..+ ++|||++||+++.+.. |||+++|++|++++.|+++++...+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999988653 7999999999999877 9999999999999999999887653
No 233
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-47 Score=362.78 Aligned_cols=219 Identities=27% Similarity=0.473 Sum_probs=186.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--CH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--GL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 186 (362)
..|+++|++++|++. ++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 44 ~~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 469999999999753 59999999999999999999999999999999999986 6899999999988642 34
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCCC---------------C-----CHHHHHHHHHHcCCChHHHhccccchhhh
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLEE---------------Y-----ADEEIWEALDKCQLGNEVRKNEGKLESRV 246 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~---------------~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~ 246 (362)
..+++.++|+||++.+|+.|+++|+.+... . .++.+.++++.+++.+. +.+.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHHh
Confidence 466788999999999998899999974210 0 12335566666665432 23445
Q ss_pred ccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE-EEEe
Q 018040 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV-LLLS 324 (362)
Q Consensus 247 ~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri-~vl~ 324 (362)
++++.+||||||||++|||||+++|+||||||||++||+.++..+.+.|++..++.|+|++||+++.+.. |||+ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 6678899999999999999999999999999999999999999999999987667899999999999887 9997 5789
Q ss_pred CCEEEEecChhHHhhcC
Q 018040 325 YGLIEEFDSPTRLLENK 341 (362)
Q Consensus 325 ~G~i~~~g~~~~l~~~~ 341 (362)
+|++++.|+++++.+.+
T Consensus 275 ~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 275 GGELVEYDDTDKIFENP 291 (305)
T ss_pred CCEEEEeCCHHHHHhCc
Confidence 99999999999987653
No 234
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3e-47 Score=356.92 Aligned_cols=223 Identities=22% Similarity=0.296 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCC-----CH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSI-----GL 186 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~-----~~ 186 (362)
.++++||+++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..
T Consensus 4 ~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCCe--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 58999999999753 5999999999999999999999999999999999999986 49999999988543 23
Q ss_pred HHHhcCcEEEcCCCCCCc-ccHHhhcCcCCC---------------CCHHHHHHHHHHcCCChHHHhccccchhhhccCC
Q 018040 187 HDLRSRLSIIPQDPTMFE-GSVHNNLDPLEE---------------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g 250 (362)
..++++++|+||++.+|+ .|+.+|+.+... ...+++.++++.+++.+. .+..+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-----------AHQRV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-----------HhCCc
Confidence 456778999999998887 499999964210 012345566666666433 33455
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6789999999999999999999999999999999999999999998864 37899999999998876 99999999999
Q ss_pred EEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 328 IEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 328 i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
+++.|+++++ .+ ....+++....
T Consensus 231 i~~~g~~~~~-~~--~~~~~~~~~~~ 253 (262)
T PRK09984 231 VFYDGSSQQF-DN--ERFDHLYRSIN 253 (262)
T ss_pred EEEeCCHHHh-cc--HHHHHHHhhhh
Confidence 9999999986 32 34555554433
No 235
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.4e-47 Score=354.77 Aligned_cols=211 Identities=23% Similarity=0.254 Sum_probs=175.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHH-hcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDL-RSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~-r~~ 192 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVEDK--EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECCE--EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 4789999999753 5999999999999999999999999999999999995 7999999999999877765554 345
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCCC----------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCC-CCChh
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLEE----------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE-NWSMG 256 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~~----------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~-~LSgG 256 (362)
++|+||++.+|+. |+++|+.+... .. .+++.++++.+++.+. ....... +||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE----------FLNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh----------hcccccccCcCHH
Confidence 9999999998875 89998753210 01 1334556666665421 1222333 48999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g~ 333 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998865 47899999999999976 79999999999999999
Q ss_pred hhHHh
Q 018040 334 PTRLL 338 (362)
Q Consensus 334 ~~~l~ 338 (362)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 87653
No 236
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4.4e-47 Score=350.85 Aligned_cols=211 Identities=25% Similarity=0.393 Sum_probs=180.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999865442 4678999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+. |+.+|+.+... .. .+++.++++.+++.+.. +....+||+||+||++|||||
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 9999999975 99999965321 11 23445666666664333 334467899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
+++|+++||||||++||+.+++.+.+.+.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 999999999999999999999999999987643 7899999999999877 9999999999999999999987653
No 237
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-47 Score=355.71 Aligned_cols=226 Identities=27% Similarity=0.385 Sum_probs=188.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC------EeCCCCCHH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG------IDISSIGLH 187 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g------~~i~~~~~~ 187 (362)
..+.++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 9 ~~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 359999999999753 599999999999999999999999999999999999999997766665 555555556
Q ss_pred HHhcCcEEEcCCCCCCcc-cHHhhcCcCC---CC-CH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 188 DLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EY-AD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~-~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
.+++.++|+||++.+|++ |+++|+.+.. .. .. +.+.++++.+++.+.+ ....++.+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 678889999999998875 9999997421 11 12 2345666777765422 1233456678999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||++||||++.+|+++||||||++||+.+++.+.+.+.+..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999887667999999999999976 999999999999999999999
Q ss_pred hhcCCcHHHHH
Q 018040 338 LENKSSSFAQL 348 (362)
Q Consensus 338 ~~~~~~~~~~~ 348 (362)
.+++...+.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 87755445443
No 238
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.2e-47 Score=380.05 Aligned_cols=230 Identities=27% Similarity=0.351 Sum_probs=193.7
Q ss_pred ccEEEEEEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC--C
Q 018040 114 GEVDIHGLQVRYAPH---------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI--S 182 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~---------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i--~ 182 (362)
..++++|++++|... ...+++||||++++||++||||+||||||||.++|+|+++|++|+|.++|.+. +
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 458899999999731 23589999999999999999999999999999999999999999999999872 2
Q ss_pred CCCHHHHhcCcEEEcCCCCC--Cc-ccHHhhcCc----CCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCC
Q 018040 183 SIGLHDLRSRLSIIPQDPTM--FE-GSVHNNLDP----LEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251 (362)
Q Consensus 183 ~~~~~~~r~~i~~v~Q~~~l--~~-~tv~enl~~----~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~ 251 (362)
.-.....|+++-+|||||+- .+ .||.+++.. ... ...+++.+.++.+++... .+++++.
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~ 428 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPH 428 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCch
Confidence 22234567889999999963 33 499988842 111 112456777888888632 4455667
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
+||||||||+||||||+.+|+++|+|||||+||+.++..+.++|+++. -|.|.|+||||+..++. ||||+||++|+|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 789999999999999999999999999999999999999999998864 37899999999999999 999999999999
Q ss_pred EEecChhHHhhcCCcHHHHHHHHHh
Q 018040 329 EEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 329 ~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
+|.|+.+++++++...|.+.+.+..
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L~~av 533 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKLLAAV 533 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHHHHhc
Confidence 9999999999998888988776543
No 239
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-47 Score=351.05 Aligned_cols=210 Identities=23% Similarity=0.388 Sum_probs=180.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999974 28999999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|+ .|+.||+.+.. .. ..+++.++++.+++.+..+ +.+.+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHH
Confidence 999999886 59999996421 11 1234556677777655443 33456899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
+.+|++++|||||++||+.+++.+.+.+++... ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999988642 7999999999999887 9999999999999999999887654
No 240
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.2e-47 Score=345.37 Aligned_cols=201 Identities=21% Similarity=0.361 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|+. .++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 468999999963 468999999999999999999999999999999999999999999999986543 35678999
Q ss_pred EcCCCCCCcc-cHHhhcCcC-C-C-----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFEG-SVHNNLDPL-E-E-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~-~-~-----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+|.. |+.+|+.+. . . ..+.++.++++.+++.+..++ .+.+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR-----------LPEQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhC-----------CcccCCHHHHHHHHHHHHH
Confidence 9999998874 999998642 1 1 123455667777777554443 3446899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
+.+|+++||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999998864 37899999999999876 99999999999998875
No 241
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.1e-46 Score=351.76 Aligned_cols=216 Identities=22% Similarity=0.299 Sum_probs=180.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCEeCCCCCHHHHh
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP----TAGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~~r 190 (362)
.++++|++++| + .++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 3 2599999999999999999999999999999999999999 999999999988532 2234
Q ss_pred cCcEEEcCCCC-CCc--ccHHhhcCc-----CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPT-MFE--GSVHNNLDP-----LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~-l~~--~tv~enl~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
+.++|+||++. .|. .|+.+|+.. .....++++.++++.+++.+. .+.+++.+.+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 57999999985 343 377777532 112234567778888877542 12345566789999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+.+|++|||||||++||+.+++.+.+.|++.. .+.|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999999999998764 37899999999999976 99999999999999999999987
Q ss_pred cCCc
Q 018040 340 NKSS 343 (362)
Q Consensus 340 ~~~~ 343 (362)
++..
T Consensus 231 ~~~~ 234 (254)
T PRK10418 231 APKH 234 (254)
T ss_pred CCCC
Confidence 6543
No 242
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1e-46 Score=345.00 Aligned_cols=204 Identities=25% Similarity=0.382 Sum_probs=176.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999998875321 357999
Q ss_pred EcCCCCCCc-ccHHhhcCcC---CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPL---EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
+||++.++. .|+++|+.+. ......++.++++.+++.+..+. .+.+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 5999998642 12345567778888887654433 34568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998864 47899999999999976 99999999999999998765
No 243
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.5e-47 Score=370.19 Aligned_cols=211 Identities=23% Similarity=0.331 Sum_probs=178.2
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHHhcCcEE
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDLRSRLSI 195 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~ 195 (362)
|++++|++. .+ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+++++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999753 35 999999999999999999999999999999999999999999999986432 2245778999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCC-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEE-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+||++.+|+. |+++|+.+... .. .+++.++++.+++.+. .+..+.+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-----------LGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 99999975321 11 2235666776666443 344456789999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHH
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
+|++|||||||++||+.+++.+.+.|++.. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 999999999999999999999999998864 3 7899999999999887 99999999999999999999987654333
No 244
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-47 Score=355.78 Aligned_cols=211 Identities=26% Similarity=0.336 Sum_probs=181.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--------ccEEEECCEeCCCCCHH
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT--------AGLIAIDGIDISSIGLH 187 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~--------~G~I~i~g~~i~~~~~~ 187 (362)
|+++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998777766
Q ss_pred HHhcCcEEEcCCCC-CCcccHHhhcCcCCC--------C---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCCh
Q 018040 188 DLRSRLSIIPQDPT-MFEGSVHNNLDPLEE--------Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~-l~~~tv~enl~~~~~--------~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSg 255 (362)
.+++.++|+||++. ++..|++||+.+... . ..+.+.++++.+++. +.++..+.+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCH
Confidence 77778999999986 467799999965310 0 122345566666553 344556678999
Q ss_pred hHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEE
Q 018040 256 GQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLL 323 (362)
Q Consensus 256 GqrQRv~iAral~---------~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl 323 (362)
|||||++|||||+ .+|++|||||||++||+.+++.+.+.+++.. + ++|+|+|||+++.+.. ||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 5999999999999999999999999998864 3 7899999999999976 9999999
Q ss_pred eCCEEEEecChhHHhh
Q 018040 324 SYGLIEEFDSPTRLLE 339 (362)
Q Consensus 324 ~~G~i~~~g~~~~l~~ 339 (362)
++|++++.|+++++.+
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999998865
No 245
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-47 Score=352.73 Aligned_cols=201 Identities=25% Similarity=0.271 Sum_probs=171.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999975 3599999999999999999999999999999999999999999999999987542 246899
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+||++.+++ .|+.+|+.+.. ... .+++.++++.+++.+.. ...+.+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999998887 59999996421 111 23456667777664433 334567899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-c-CCceEEEEecChhhhhh-cCeEEEEe--CCEEEEecCh
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQH-F-SDCTVITIAHRITSVID-SDMVLLLS--YGLIEEFDSP 334 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~-~-~~~tvi~itH~l~~~~~-~Dri~vl~--~G~i~~~g~~ 334 (362)
+.+|++|||||||++||+.++..+.+.|++. . .++|||++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999886 3 47999999999999887 99999999 5999998754
No 246
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-47 Score=332.78 Aligned_cols=171 Identities=39% Similarity=0.675 Sum_probs=158.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++...++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999997643359999999999999999999999999999999999999999999999999877776677888999
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
+||++.+|+.|+.||+ ||||||||++||||++.+|+++|
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999888999887 69999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 276 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
|||||++||+.++..+.+.+++..+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999988766799999999999997899999999985
No 247
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.6e-46 Score=348.67 Aligned_cols=222 Identities=21% Similarity=0.322 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe-----CCCCCHHH-
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID-----ISSIGLHD- 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-----i~~~~~~~- 188 (362)
.++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 58999999999753 58999999999999999999999999999999999999999999999987 65555433
Q ss_pred ---HhcCcEEEcCCCCC--C-cccHHhhcCc----CCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 189 ---LRSRLSIIPQDPTM--F-EGSVHNNLDP----LEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 189 ---~r~~i~~v~Q~~~l--~-~~tv~enl~~----~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
+++.++|++|++.. + ..|+.+|+.. ... ...+.+.++++.+++.+ +..+..+.+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 24579999999852 2 3477777632 111 11234455555555531 23455667899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
||||||++|||||+.+|++|||||||++||+.+++.+.+.+++.. .+.|+|++||+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998753 37899999999999987 999999999999999
Q ss_pred cChhHHhhcCCcHHHHH
Q 018040 332 DSPTRLLENKSSSFAQL 348 (362)
Q Consensus 332 g~~~~l~~~~~~~~~~~ 348 (362)
|+++++..++...|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQL 247 (253)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999987654455443
No 248
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.9e-46 Score=350.66 Aligned_cols=224 Identities=25% Similarity=0.333 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-
Q 018040 115 EVDIHGLQVRYAPH-------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL- 186 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~- 186 (362)
.|+++||+++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 48999999999741 2469999999999999999999999999999999999999999999999999876654
Q ss_pred --HHHhcCcEEEcCCCC--CCc-ccHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 187 --HDLRSRLSIIPQDPT--MFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 187 --~~~r~~i~~v~Q~~~--l~~-~tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
..+++.++|+||++. +++ .|+.+|+.+. .... ...+.++++.+++.. ...+..+.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCccC
Confidence 245778999999983 443 5899987421 1111 123455666555531 1334556789
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 9999999999999999999999999999999999999999998764 27899999999999987 99999999999999
Q ss_pred ecChhHHhhcCCcHHHHHH
Q 018040 331 FDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 331 ~g~~~~l~~~~~~~~~~~~ 349 (362)
.|+++++... ...|...+
T Consensus 233 ~g~~~~~~~~-~~~~~~~~ 250 (268)
T PRK10419 233 TQPVGDKLTF-SSPAGRVL 250 (268)
T ss_pred eCChhhccCC-CCHHHHHH
Confidence 9999998754 44444433
No 249
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-46 Score=330.90 Aligned_cols=172 Identities=32% Similarity=0.488 Sum_probs=157.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--HHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--LHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~r~~i 193 (362)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 1 i~~~~l~~~~~~~--~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECCe--EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999987665 45667889
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
+|++|++.+|.. |+++|+.+. ||||||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999988864 999998642 69999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
++||||||++||+.++..+.+.+++..+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999988653 6899999999999986 99999999985
No 250
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.8e-46 Score=342.80 Aligned_cols=202 Identities=22% Similarity=0.317 Sum_probs=171.2
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 190 (362)
++++|+++.|+++. ..+|+++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997531 4699999999999999999999999999999999999999999999999998765533 356
Q ss_pred cCcEEEcCCCCCCc-ccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 191 SRLSIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+.++|+||++.+|. .|+.+|+.+.. ... .+++.++++.+++.+..+. .+.+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-----------YPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHH
Confidence 78999999999887 59999996421 112 2245566777766544443 3456899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
+|||||+++|+++||||||++||+.+++.+.+.|++.. .++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998764 37999999999986655999999999986
No 251
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-46 Score=329.69 Aligned_cols=170 Identities=28% Similarity=0.510 Sum_probs=155.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
+||++.+|.. |+.+|+. |||||+||++|||||+.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999988875 9999873 7999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
||||||++||+.+++.+.+.|++.. ++.|+|++||+.+.+.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999998864 46899999999999986 999999999974
No 252
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-46 Score=340.45 Aligned_cols=197 Identities=23% Similarity=0.321 Sum_probs=166.5
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHHHhcCcEE
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHDLRSRLSI 195 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~ 195 (362)
||+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999864 24 99999999 99999999999999999999999999999999999987532 22345778999
Q ss_pred EcCCCCCCc-ccHHhhcCcCCC-C----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLEE-Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~~-~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+||++.+|+ .|+++|+.+... . .++++.++++.+++.+ ..+..+.+||||||||++||||++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-----------LLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-----------HhhcCcccCCHHHHHHHHHHHHHhc
Confidence 999999886 499999864321 1 1234556666666543 3344567789999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+|+++||||||++||+.+++.+.+.+++.. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998864 3 7899999999999976 9999999999998765
No 253
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-46 Score=386.85 Aligned_cols=225 Identities=24% Similarity=0.346 Sum_probs=187.5
Q ss_pred cEEEEEEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC
Q 018040 115 EVDIHGLQVRYAPH---------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 185 (362)
Q Consensus 115 ~i~~~~l~~~y~~~---------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 185 (362)
.++++|+++.|+.. ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 59999999999621 135899999999999999999999999999999999999999999999999987665
Q ss_pred HH---HHhcCcEEEcCCC--CCCc-ccHHhhcCcC---CCC-C----HHHHHHHHHHcCCChHHHhccccchhhhccCCC
Q 018040 186 LH---DLRSRLSIIPQDP--TMFE-GSVHNNLDPL---EEY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251 (362)
Q Consensus 186 ~~---~~r~~i~~v~Q~~--~l~~-~tv~enl~~~---~~~-~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~ 251 (362)
.. .+|++|+||||++ .+++ .|+.+|+.+. ... . .+++.++++.+++.. ......+.
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~----------~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP----------EHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH----------HHhhCCcc
Confidence 33 3567899999998 3665 4999998531 111 1 234566777777742 12233456
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++.. .+.|||+||||++.+.. ||||++|++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 689999999999999999999999999999999999999999998864 37899999999999987 999999999999
Q ss_pred EEecChhHHhhcCCcHHHHHH
Q 018040 329 EEFDSPTRLLENKSSSFAQLV 349 (362)
Q Consensus 329 ~~~g~~~~l~~~~~~~~~~~~ 349 (362)
++.|++++++.++...|.+.+
T Consensus 543 v~~g~~~~i~~~p~~~~~~~l 563 (623)
T PRK10261 543 VEIGPRRAVFENPQHPYTRKL 563 (623)
T ss_pred EEecCHHHHhcCCCCHHHHHH
Confidence 999999999877666665533
No 254
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=9.5e-46 Score=344.77 Aligned_cols=208 Identities=28% Similarity=0.413 Sum_probs=177.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 58999999999753 599999999999999999999999999999999999999999999987 23699
Q ss_pred EEcCCCCCCc---ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 195 IIPQDPTMFE---GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 195 ~v~Q~~~l~~---~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
|+||++.++. .|+.+|+.......++++.++++.+++.+..+. .+.+||||||||++|||||+.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999987764 378888754333445677888888887655433 34568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
+++||||||++||+.++..+.+.|++.. + ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+. ..+.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHH
Confidence 9999999999999999999999998764 3 7899999999999877 999999965 79999999998653 345554
Q ss_pred H
Q 018040 349 V 349 (362)
Q Consensus 349 ~ 349 (362)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 4
No 255
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-46 Score=348.84 Aligned_cols=209 Identities=23% Similarity=0.303 Sum_probs=173.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 59999999999643 359999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEcCCCCC---CcccHHhhcCcCC-----------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 195 IIPQDPTM---FEGSVHNNLDPLE-----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 195 ~v~Q~~~l---~~~tv~enl~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
|+||++.+ +..++++|+.+.. ....+.+.++++.+++.+.. .....+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-----------HRQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHH
Confidence 99999865 3447888875310 01123455667777765433 33456799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998864 47899999999999877 9999777 89999999999876
Q ss_pred h
Q 018040 339 E 339 (362)
Q Consensus 339 ~ 339 (362)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
No 256
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-45 Score=376.82 Aligned_cols=212 Identities=22% Similarity=0.359 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh-cCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR-SRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r-~~i 193 (362)
.++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.+
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSGV--EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 59999999999753 599999999999999999999999999999999999999999999999998776655544 469
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCC---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEY---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|+||++.+++. |+.+|+.+.... ..+++.++++.+++.+. ......+|||||||||+|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999988865 999999764221 13456667777776433 233456689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998764 47899999999999987 99999999999999999988754
No 257
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-46 Score=335.36 Aligned_cols=190 Identities=22% Similarity=0.264 Sum_probs=161.1
Q ss_pred cEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHH
Q 018040 115 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 189 (362)
.+.++|++|.|+.. ..++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999753 4579999999999999999999999999999999999999 89999999999987653 346
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
++.++|+||++.+|+. |+++|+.+.... . ..+....||||||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 7789999999988864 999998643110 0 22345678999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEe-cChhhhhh-cCeEEEEeCCEEEEec
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIA-HRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~it-H~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
++|+++||||||++||+.+++.+.+.+++..+ +.|+|+++ |+.+.+.. ||++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998643 46666655 55677766 9999999999998754
No 258
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.2e-46 Score=369.77 Aligned_cols=229 Identities=26% Similarity=0.371 Sum_probs=193.8
Q ss_pred cEEEEEEEEEeCCCCC--ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC----ccEEEECCEeCCCCCHHH
Q 018040 115 EVDIHGLQVRYAPHLP--LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT----AGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~--~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~----~G~I~i~g~~i~~~~~~~ 188 (362)
.++++|+++.|..... .+++||||+|.+||++||||+|||||||+.++|+|++++. +|+|.++|.++..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5999999999975432 4899999999999999999999999999999999999987 799999999998887654
Q ss_pred H---h-cCcEEEcCCCC-CCc--ccHHhhcC----cCCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 189 L---R-SRLSIIPQDPT-MFE--GSVHNNLD----PLEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 189 ~---r-~~i~~v~Q~~~-l~~--~tv~enl~----~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
+ | ++|+||||+|. .++ .|+.+-+. .... ...++..+.++.+++.+.... ...+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4 3 46999999984 333 36655542 1111 234556778888988764433 3456778
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||+.||+||+.+|++||+||||++||+.++.+|+++|+++. .|.++|+||||+..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 57999999999999998 99999999999999
Q ss_pred ecChhHHhhcCCcHHHHHHHHH
Q 018040 331 FDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 331 ~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
.|+++++++++...|.+.+.+.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a 257 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA 257 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh
Confidence 9999999999888887776443
No 259
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-47 Score=323.78 Aligned_cols=217 Identities=28% Similarity=0.402 Sum_probs=187.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----------
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI---------- 184 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~---------- 184 (362)
.++++|+.++|+.. .+|++||++.++|+.+.|+|.|||||||+|+||.=+..|+.|+|.++|+.|.-.
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58999999999876 499999999999999999999999999999999999999999999999987421
Q ss_pred C---HHHHhcCcEEEcCCCCCCc-ccHHhhcCcC-----C---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 185 G---LHDLRSRLSIIPQDPTMFE-GSVHNNLDPL-----E---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 185 ~---~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~-----~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
+ .+.+|.+.++|||+..|++ .|+.||+--. . ....++.+..|.++|+.+..+.. +..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----------P~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY-----------PAH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcC-----------ccc
Confidence 2 2346788999999999985 5999998421 1 11234456677888887665544 455
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||+||++|||||+.+|+++++|||||+|||+-.-.+++.++++. +|+|.++|||.+.++.+ +.+|++|++|+|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 79999999999999999999999999999999999999999999875 68999999999999999 99999999999999
Q ss_pred ecChhHHhhcCCcH
Q 018040 331 FDSPTRLLENKSSS 344 (362)
Q Consensus 331 ~g~~~~l~~~~~~~ 344 (362)
.|+|++++.+|.+.
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999999987653
No 260
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-46 Score=326.26 Aligned_cols=213 Identities=26% Similarity=0.374 Sum_probs=185.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+.+|++++..++ .+|+++||++++||+++|+||||||||||||.|+|.+.|++|++.++|.++..++..++.++-+
T Consensus 1 mi~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 37889999998765 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CcccHHhhcCcCC-------CC-CHHH-HHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 195 IIPQDPTM-FEGSVHNNLDPLE-------EY-ADEE-IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 195 ~v~Q~~~l-~~~tv~enl~~~~-------~~-~~~~-~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++||+..+ |+.||+|-+.++. +. .+++ ..+++.++++..+..+ ....|||||||||.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHH
Confidence 99999876 7889999886532 11 1222 5677888877655443 3346899999999999
Q ss_pred HHhcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 265 RVLLK------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 265 ral~~------~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|.|++ ++++|+||||||+||...+..+++..+++. ++..|+.|-||++.... ||||++|++||+++.|+|++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99987 345999999999999999999999999875 57999999999999876 99999999999999999999
Q ss_pred Hhhc
Q 018040 337 LLEN 340 (362)
Q Consensus 337 l~~~ 340 (362)
++..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 9875
No 261
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8.5e-46 Score=339.74 Aligned_cols=203 Identities=26% Similarity=0.307 Sum_probs=169.2
Q ss_pred EEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHHh
Q 018040 116 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 116 i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~r 190 (362)
+.++|++++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6789999999765 2579999999999999999999999999999999999999 99999999999874 24567
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcCCC-----C-CHH----HHHH-HHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPLEE-----Y-ADE----EIWE-ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~~~-----~-~~~----~~~~-~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
+.++|+||++.+|+. |++||+.+... . ... ...+ .++.++ +.....+...+|||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA-----------LTRIGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhc-----------chhhhcccccCcCHHHH
Confidence 889999999999876 99999964211 0 111 1111 233333 33334556678999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecCh-hhhhh-cCeEEEEeCCEEEEec
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRI-TSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l-~~~~~-~Dri~vl~~G~i~~~g 332 (362)
||++|||||+++|+++||||||++||+.++..+.+.+++.. ++.|+|++||++ +.+.. ||++++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998764 478999999998 46666 9999999999998865
No 262
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-46 Score=377.57 Aligned_cols=212 Identities=22% Similarity=0.317 Sum_probs=180.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 193 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 58999999999753 5999999999999999999999999999999999999999999999999997766544 34679
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC-------CC---C----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE-------EY---A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~-------~~---~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
+|+||++.+++. |+++|+.+.. .. . .+++.++++.+++.+. .+....+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHHH
Confidence 999999988865 9999986421 10 1 1334556666666432 3344567899999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||+|||||+.+|++|||||||++||+.++..+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998864 47899999999999987 99999999999999999887
Q ss_pred Hhh
Q 018040 337 LLE 339 (362)
Q Consensus 337 l~~ 339 (362)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 643
No 263
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.6e-45 Score=331.99 Aligned_cols=185 Identities=26% Similarity=0.340 Sum_probs=161.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHH-hcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-RSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 192 (362)
++++|++++|++. ++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGGK--EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCCE--EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 4689999999753 599999999999999999999999999999999999 58999999999999987765544 456
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
++|+||++.++++ ++++++ .. ...+||||||||++||||++.+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999988875 555554 00 11358999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhh--hcCeEEEEeCCEEEEecChhHHh
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI--DSDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~--~~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999998864 4789999999999988 59999999999999999 44453
No 264
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=376.63 Aligned_cols=211 Identities=22% Similarity=0.313 Sum_probs=180.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHH-Hhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHD-LRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~r~ 191 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .++
T Consensus 5 ~l~~~nl~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGGV--KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCCe--EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 59999999999753 599999999999999999999999999999999999996 8999999999997666543 457
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCCC------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLEE------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~~------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
.++|+||++.+++. |++||+.+... .. .+++.++++.+++.+. .+....+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHHHHH
Confidence 79999999988864 99999975321 11 1345566666665432 334456789999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
++|||||+.+|++|||||||++||+.++..+.+.|.+.. +++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998864 57899999999999987 9999999999999999988764
No 265
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=7.4e-46 Score=332.67 Aligned_cols=182 Identities=26% Similarity=0.359 Sum_probs=159.9
Q ss_pred cEEEEEEEEEeCCC----CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHH
Q 018040 115 EVDIHGLQVRYAPH----LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~----~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~ 188 (362)
.++++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 246999999999999999999999999999999999999 9999999999998864 25
Q ss_pred HhcCcEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 189 LRSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+++.++|+||++.+|.. |+++|+.+.. ... +||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~~~---------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------KLR---------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------Hhc---------------------cCCHHHHHHHHHHHHH
Confidence 67789999999988864 9999884210 000 5899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChh-hhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRIT-SVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~~-~Dri~vl~~G~i~~~g 332 (362)
+.+|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++ .+.. ||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 4799999999996 5665 9999999999998754
No 266
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=376.04 Aligned_cols=211 Identities=22% Similarity=0.299 Sum_probs=179.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 193 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPGV--KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCCe--EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 48999999999753 5999999999999999999999999999999999999999999999999986554433 35679
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC-------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE-------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~-------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+|+||++.+++. |++||+.+... .. .+++.++++.+++.+. ......+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHHH
Confidence 999999988864 99999975311 11 1234556666666432 2334556899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+|||||+.+|++|||||||++||+.++..+.+.+++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999999998764 47899999999999987 9999999999999999887763
No 267
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.8e-45 Score=341.50 Aligned_cols=211 Identities=22% Similarity=0.253 Sum_probs=175.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHHhc-
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDLRS- 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~r~- 191 (362)
.++++|++++|++. .+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 59999999999753 599999999999999999999999999999999998 6899999999999988776555444
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCCC----------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCC-CCCh
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLEE----------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE-NWSM 255 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~~----------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~-~LSg 255 (362)
.++|++|++.+++. |+.+|+.+... .. .+++.++++.+++.+ +.++.... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCH
Confidence 48999999988875 78888753210 01 123445666666542 12233333 4899
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEec
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g 332 (362)
|||||++|||||+++|+++||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998864 47999999999999875 8999999999999999
Q ss_pred ChhHH
Q 018040 333 SPTRL 337 (362)
Q Consensus 333 ~~~~l 337 (362)
+++..
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 98743
No 268
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.2e-45 Score=327.46 Aligned_cols=177 Identities=32% Similarity=0.473 Sum_probs=157.7
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3599999999999999999999999999999999999999999999999999877777777889999
Q ss_pred cCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEE
Q 018040 197 PQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVL 276 (362)
Q Consensus 197 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illL 276 (362)
|| +++.+++.+... ..+.+||||||||++||||++.+|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 566666654332 34567899999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 277 DEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 277 DEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
||||++||+.+.+.+.+.+.+..+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999988653 7899999999999876 9999999999998653
No 269
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8.4e-46 Score=334.67 Aligned_cols=193 Identities=26% Similarity=0.352 Sum_probs=162.3
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHHhcCc
Q 018040 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDLRSRL 193 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~r~~i 193 (362)
++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGDK--IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECCE--EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 46899999753 59999999999999999999999999999999999999999999999999754432 2356789
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC---CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+|++|++.+|+ .|++||+.+.. .. ..+++.++++.+++.+. .+....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHHH
Confidence 99999999887 59999996521 11 13445667777766433 33345678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
||+++|++|||||||++||+.+++.+.+.+++.. ++.|+|++||+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998864 478999999999977669999875
No 270
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-45 Score=327.70 Aligned_cols=172 Identities=27% Similarity=0.446 Sum_probs=154.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i 193 (362)
.++++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 7999999999999999999999999999999999999999999999999887653 3457789
Q ss_pred EEEcCCC---CCCc-ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDP---TMFE-GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~---~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|+||++ .+++ .|++||+.+... ||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3454 599999854210 69999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998864 47899999999999988 999999999974
No 271
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-45 Score=330.17 Aligned_cols=181 Identities=22% Similarity=0.289 Sum_probs=158.3
Q ss_pred cEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHHh
Q 018040 115 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~r 190 (362)
.++++|++++|++. .+++|+++||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999752 246999999999999999999999999999999999986 489999999999874 4567
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
++++|++|++.+|+. |+++|+.+.. .++ +||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 789999999988875 9999985310 000 589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh-hhh-cCeEEEEeC-CEEEEec
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-VID-SDMVLLLSY-GLIEEFD 332 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~~~-~Dri~vl~~-G~i~~~g 332 (362)
+|+++||||||++||+.++..+.+.+++.. +++|+|++||+++. +.. ||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998864 47999999999984 554 999999999 9998765
No 272
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.1e-45 Score=340.82 Aligned_cols=205 Identities=22% Similarity=0.299 Sum_probs=173.5
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|+++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 46777774 179999999999999999999999999999999999865 99999999999877777777789999
Q ss_pred cCCCCCC-cccHHhhcCcCCC--CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 197 PQDPTMF-EGSVHNNLDPLEE--YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 197 ~Q~~~l~-~~tv~enl~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
||++.++ ..|+++|+.+... .. .+++.++++.+++.+ .....+..||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-----------KLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9998655 5699999975421 11 234556666666543 3344566789999999999999997
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 270 -------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 270 -------~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998864 47899999999998877 99999999999999999988864
No 273
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.9e-45 Score=337.15 Aligned_cols=206 Identities=24% Similarity=0.298 Sum_probs=169.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCEeCCCCCHHHHhcCcEEEcCCCC-CC-c-
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP----TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT-MF-E- 204 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~-~- 204 (362)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 47899999999999999999999999999999999999 899999999988643 222357999999985 34 3
Q ss_pred ccHHhhcCcC----CCC---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEe
Q 018040 205 GSVHNNLDPL----EEY---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 277 (362)
Q Consensus 205 ~tv~enl~~~----~~~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLD 277 (362)
.|+.+|+.+. ... ..+++.++++.+++.+. ++..+..+.+||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4888886421 111 12346677777776521 13345566789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHHHH
Q 018040 278 EATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347 (362)
Q Consensus 278 EPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 347 (362)
|||++||+.+++.+.+.+++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++...+...+.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 9999999999999999998864 37899999999999986 9999999999999999999998765444443
No 274
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.2e-45 Score=338.28 Aligned_cols=190 Identities=22% Similarity=0.319 Sum_probs=157.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc-CCCCCCc-ccHH
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP-QDPTMFE-GSVH 208 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~~-~tv~ 208 (362)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.++. .|++
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcHH
Confidence 599999999999999999999999999999999999999999999999986542 235677899998 5566664 5999
Q ss_pred hhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 209 NNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 209 enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
+|+.+.. .... +.+.++++.+++.+. ......+||||||||++|||||+.+|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-----------LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 9985421 1222 233445555555432 233455689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 282 SVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+||+.+++.+.+.|++.. .++|||++||+++.+.. ||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999998864 36899999999999877 9999999999998764
No 275
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.6e-45 Score=370.78 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=180.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 48999999999753 4999999999999999999999999999999999999999999999998876666556677899
Q ss_pred EEcCCCCC--C-------cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 195 IIPQDPTM--F-------EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 195 ~v~Q~~~l--~-------~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
|+||++.+ + ..|+++|+.... ...+++.++++.+++.+.. +....+||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHHHHH
Confidence 99998753 1 347888875421 1245567778877765433 3344568999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999998864 47899999999999988 999999999999999999887653
No 276
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.6e-45 Score=373.99 Aligned_cols=220 Identities=25% Similarity=0.392 Sum_probs=182.4
Q ss_pred cEEEEEEEEEeCC---------CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC
Q 018040 115 EVDIHGLQVRYAP---------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 185 (362)
Q Consensus 115 ~i~~~~l~~~y~~---------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 185 (362)
.++++|++++|+. +..++|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 5999999999962 12359999999999999999999999999999999999985 8999999999987655
Q ss_pred HHH---HhcCcEEEcCCC--CCCc-ccHHhhcCcCC-----CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCC
Q 018040 186 LHD---LRSRLSIIPQDP--TMFE-GSVHNNLDPLE-----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250 (362)
Q Consensus 186 ~~~---~r~~i~~v~Q~~--~l~~-~tv~enl~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g 250 (362)
... ++++++|+||++ .+++ .|+.+|+.+.. ... .+++.++++.+++.+ ......+
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 432 467899999997 3665 49999986421 011 234556677776642 1223445
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|||+|||+++.+.. ||||++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 6789999999999999999999999999999999999999999998864 37899999999999987 99999999999
Q ss_pred EEEecChhHHhhcCCcHH
Q 018040 328 IEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 328 i~~~g~~~~l~~~~~~~~ 345 (362)
+++.|+++++++.+...|
T Consensus 504 i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 504 VVEQGDCERVFAAPQQEY 521 (529)
T ss_pred EEEEcCHHHHhcCCCChH
Confidence 999999999987654444
No 277
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5.7e-45 Score=319.08 Aligned_cols=164 Identities=27% Similarity=0.350 Sum_probs=148.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999643 35999999999999999999999999999999999999999999999873 57999
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
++|++.+++.|++||+.+. .+.+||||||||++||||++++|+++|
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998888999998642 235689999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 276 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
|||||++||+.+++.+.+.+++. ++|+|++||+++....||++++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999876 589999999998776699999999863
No 278
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.2e-44 Score=316.23 Aligned_cols=159 Identities=29% Similarity=0.494 Sum_probs=147.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCcE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRLS 194 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i~ 194 (362)
++++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 599999999999999999999999999999999999999999999999998876653 4567899
Q ss_pred EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
|+|| ||||||||++||||++++|+++
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 6999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
||||||++||+.+++.+.+.+++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998864 47899999999998877 99999999999875
No 279
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.7e-44 Score=369.78 Aligned_cols=220 Identities=23% Similarity=0.372 Sum_probs=181.6
Q ss_pred cEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~ 187 (362)
.++++|++++|++. ..++|+++||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 59999999999642 23699999999999999999999999999999999999987 799999999998766543
Q ss_pred H---Hh-cCcEEEcCCCC--CCc-ccHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 188 D---LR-SRLSIIPQDPT--MFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 188 ~---~r-~~i~~v~Q~~~--l~~-~tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
. +| +++||+||++. +++ .|+.+|+.+. .... .+++.++++.+++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 2 33 57999999985 444 4888887421 1111 24566778888775321 122345567
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999999998864 37899999999999887 9999999999999
Q ss_pred EecChhHHhhcCC
Q 018040 330 EFDSPTRLLENKS 342 (362)
Q Consensus 330 ~~g~~~~l~~~~~ 342 (362)
+.|++++++..+.
T Consensus 237 ~~g~~~~~~~~~~ 249 (529)
T PRK15134 237 EQNRAATLFSAPT 249 (529)
T ss_pred EeCCHHHHhhCCC
Confidence 9999999876543
No 280
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=9.8e-45 Score=327.08 Aligned_cols=194 Identities=25% Similarity=0.327 Sum_probs=166.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4789999999753 5899999999999999999999999999999999999999999999999876433 456788999
Q ss_pred EcCCCCCCc-ccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 196 IPQDPTMFE-GSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
+||++.++. .|+++|+.+... ..++++.++++.+++.+.. .....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-----------DRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998774 699999976432 3456677888888875432 233456899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEE
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLL 323 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl 323 (362)
+||||||++||+.+++.+.+.+++.. +++|+|++||+...+.. |++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998764 47899999999877766 9999887
No 281
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4e-45 Score=311.24 Aligned_cols=206 Identities=24% Similarity=0.301 Sum_probs=175.1
Q ss_pred cEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H
Q 018040 115 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 189 (362)
-|+++++++..+.. .-.+|++|+|.|++||.++||||||||||||+-+++|+..|++|+|++.|+++..++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888888877643 235899999999999999999999999999999999999999999999999999887653 4
Q ss_pred h-cCcEEEcCCCCCCc-ccHHhhcCcC---CC--C--CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 190 R-SRLSIIPQDPTMFE-GSVHNNLDPL---EE--Y--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 190 r-~~i~~v~Q~~~l~~-~tv~enl~~~---~~--~--~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
| +++|||||...|.+ .|..||+... .. . ......+.++.+|+.+.+.+ .+.+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-----------yP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH-----------YPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccccc-----------CccccCchHHHH
Confidence 4 57999999998876 4999998632 11 1 22345677888877655444 455679999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEF 331 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~ 331 (362)
|+||||++-.|++|+.||||.+||..|.+.|.+++-.+. .|.|.|+||||...+.+|||++-|.+|++++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999987653 57999999999999999999999999999753
No 282
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-45 Score=379.17 Aligned_cols=224 Identities=23% Similarity=0.322 Sum_probs=183.3
Q ss_pred ccEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC---------
Q 018040 114 GEVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--------- 182 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--------- 182 (362)
..|+++|++++|+.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 369999999999632 235999999999999999999999999999999999999999999999997552
Q ss_pred -CCCHH---HHh-cCcEEEcCCC--CCCc-ccHHhhcCcCC----CCC----HHHHHHHHHHcCCChHHHhccccchhhh
Q 018040 183 -SIGLH---DLR-SRLSIIPQDP--TMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRV 246 (362)
Q Consensus 183 -~~~~~---~~r-~~i~~v~Q~~--~l~~-~tv~enl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~ 246 (362)
..+.. .+| ++||||+|+| .+++ .|+.+|+.+.. ... .+++.++++.+++.+. +..+
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 12222 233 4799999998 5665 49999986421 112 2355667777776421 1233
Q ss_pred ccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEE
Q 018040 247 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLL 323 (362)
Q Consensus 247 ~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl 323 (362)
.+.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.++++. + ++|||+|||+++.+.. ||||++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 45567799999999999999999999999999999999999999999998864 3 7899999999999987 9999999
Q ss_pred eCCEEEEecChhHHhhcCCcHH
Q 018040 324 SYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 324 ~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
++|++++.|++++++..+...|
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred eCCeecccCCHHHhhcCCCChh
Confidence 9999999999999876544344
No 283
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.3e-44 Score=334.45 Aligned_cols=210 Identities=22% Similarity=0.260 Sum_probs=167.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHHh-cC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDLR-SR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~r-~~ 192 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+....+ +.
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 7899999999753 5999999999999999999999999999999999995 69999999999998776655544 56
Q ss_pred cEEEcCCCCCCcc-cHHhhcCc-------CCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCC-CCCChh
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDP-------LEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENG-ENWSMG 256 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~-------~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g-~~LSgG 256 (362)
++|++|++.+++. +..+++.. ... .. .+.+.+.++.+++.+ ....... .+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE----------DLLTRSVNVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh----------hhcccCCCCCCCHH
Confidence 9999999977654 44433211 100 01 112233344444321 1112223 269999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g~ 333 (362)
||||++||||++++|++|||||||++||+.+++.+.+.++++. .++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 9999999999999999999999999999999999999998765 46899999999999886 79999999999999999
Q ss_pred hhHH
Q 018040 334 PTRL 337 (362)
Q Consensus 334 ~~~l 337 (362)
++.+
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 8754
No 284
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.6e-45 Score=327.79 Aligned_cols=194 Identities=25% Similarity=0.349 Sum_probs=166.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECCE--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 7899999999753 5999999999999999999999999999999999999999999999999986543 346778999
Q ss_pred EcCCCCCCc-ccHHhhcCcCCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
++|++.+++ .|+.||+.+... ...+++.++++.+++.+..+ ....+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 599999964321 23456677888888754432 33456899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEE
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLL 323 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl 323 (362)
|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998764 47899999999999987 5788776
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=367.79 Aligned_cols=207 Identities=19% Similarity=0.290 Sum_probs=175.0
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCcEEE
Q 018040 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRLSII 196 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i~~v 196 (362)
++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++.++|+
T Consensus 1 ~~nl~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPGV--KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCCE--EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 36899999753 599999999999999999999999999999999999999999999999998755433 456789999
Q ss_pred cCCCCCCc-ccHHhhcCcCC----C--CCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 197 PQDPTMFE-GSVHNNLDPLE----E--YAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 197 ~Q~~~l~~-~tv~enl~~~~----~--~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
||++.++. .|+++|+.+.. . ... +++.++++.+++.+ .....+.+|||||||||+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHHH
Confidence 99998775 49999987531 1 111 23445555555432 334456679999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999998864 57899999999999987 999999999999999998776
No 286
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=366.85 Aligned_cols=207 Identities=22% Similarity=0.315 Sum_probs=176.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i 193 (362)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.+
T Consensus 4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 58999999999753 59999999999999999999999999999999999999999999999999865443 3457789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC-----C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE-----E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~-----~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
+|+||++.+++. |+.+|+.+.. . .. .+++.++++.+++.+. ....+.+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHHH
Confidence 999999988875 9999997531 1 11 2345566776665422 23445679999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998764 47899999999999987 999999999999876653
No 287
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1e-44 Score=333.59 Aligned_cols=189 Identities=25% Similarity=0.384 Sum_probs=160.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHhhc
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNL 211 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl 211 (362)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|+ .|+.+|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 578999999999999999999999999999999999999999999999865432 2489999999887 5999998
Q ss_pred CcC-----CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 212 DPL-----EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 212 ~~~-----~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
.+. ....+ +++.++++.+++.+. ....+.+||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEA-----------ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHH-----------HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 642 12222 234556666666433 3334567899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 283 VDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||+.+++.+.+.|.+.. .++|||++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999998754 37899999999999877 999999999999999987665
No 288
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2e-44 Score=366.92 Aligned_cols=210 Identities=24% Similarity=0.335 Sum_probs=176.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHH-HhcC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHD-LRSR 192 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~r~~ 192 (362)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++.
T Consensus 2 l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGGV--KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCCe--EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 7899999999753 599999999999999999999999999999999999987 7999999999987766544 3567
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCCC-------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLEE-------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~~-------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
++|+||++.+++. |+.+|+.+... .. .+++.++++.+++.+.. ......+||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHHH
Confidence 9999999988764 99999865311 11 12345566666654321 122345689999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|+|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+++..|+++++
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999998764 47899999999999987 999999999999999887654
No 289
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-44 Score=330.58 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=174.0
Q ss_pred cEEEEEEEEEeCCCC-------CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYAPHL-------PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~-------~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 187 (362)
.++++|+++.|+-.. ..+++||||+|++||+++|||+||||||||-++|+|+++|++|+|+++|+++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 488999999996432 25899999999999999999999999999999999999999999999999876543
Q ss_pred HHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 188 DLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
.....+++.+.++.+|+.+. ...+.+.+||||||||++|||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~----------~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEE----------FLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHH----------HhhcCCcccCchhhhhHHHHHHH
Confidence 12234668889999987642 23344566899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSS 344 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~ 344 (362)
+.+|+++++|||+|+||...+.++.+++.++. .+.|.++||||++.+.+ ||||+||..|+|+|.|+.++++.++...
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~Hp 204 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHP 204 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCH
Confidence 99999999999999999999999999998764 47899999999999999 9999999999999999999999998888
Q ss_pred HHHHHHHH
Q 018040 345 FAQLVAEY 352 (362)
Q Consensus 345 ~~~~~~~~ 352 (362)
|.+.+-+.
T Consensus 205 YTk~Ll~a 212 (268)
T COG4608 205 YTKALLSA 212 (268)
T ss_pred HHHHHHHh
Confidence 98776544
No 290
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.2e-44 Score=368.23 Aligned_cols=220 Identities=25% Similarity=0.403 Sum_probs=178.3
Q ss_pred ccEEEEEEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC-CEe---CCCCC-
Q 018040 114 GEVDIHGLQVRYAP---HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID-GID---ISSIG- 185 (362)
Q Consensus 114 ~~i~~~~l~~~y~~---~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~-g~~---i~~~~- 185 (362)
..++++|++++|++ +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 35999999999953 22359999999999999999999999999999999999999999999996 643 33222
Q ss_pred --HHHHhcCcEEEcCCCCCCcc-cHHhhcCcCC--CC----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 186 --LHDLRSRLSIIPQDPTMFEG-SVHNNLDPLE--EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 186 --~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
...++++++|+||++.+++. |+.+|+.+.. .. ..+++.++++.+++.+.- .+...+..+.+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHH
Confidence 12346679999999988864 9999996311 11 123455677777764210 011234455678999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||||+|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||||++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998764 37899999999999987 99999999999999999
Q ss_pred hhHHhh
Q 018040 334 PTRLLE 339 (362)
Q Consensus 334 ~~~l~~ 339 (362)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888754
No 291
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.9e-44 Score=325.59 Aligned_cols=195 Identities=23% Similarity=0.250 Sum_probs=165.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 59999999999753 599999999999999999999999999999999999999999999999988642 3455799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC----CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
|++|++.+++. |+.+|+.+.. ...++...++++.+++.+. .+....+||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999988875 9999985421 1123344566676665432 233456799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeC
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998753 57899999999999987 999999874
No 292
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-44 Score=322.85 Aligned_cols=193 Identities=20% Similarity=0.240 Sum_probs=163.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCCe--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 7899999999753 59999999999999999999999999999999999999999999999998864 33456788999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
+||++.+++ .|+++|+.+.. ......+.++++.+++.+..+ ....+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-----------YPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-----------CChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998875 69999987531 112345666777776644322 2335689999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEE
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~v 322 (362)
+|||||||++||+.+++.+.+.|++.. +++|+|++||+.+.+..||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999998853 57899999999999988987543
No 293
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-43 Score=336.44 Aligned_cols=226 Identities=26% Similarity=0.415 Sum_probs=191.8
Q ss_pred ccEEEEEEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC
Q 018040 114 GEVDIHGLQVRYAPH---------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 184 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~---------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~ 184 (362)
.-++.+++.+.|+-+ ...++++|||++++||.+||||+||||||||-.+|++++++. |+|.++|+++...
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 459999999988532 124799999999999999999999999999999999999876 9999999999988
Q ss_pred CHHH---HhcCcEEEcCCCC--CCc-ccHHhhcCc----CC-C----CCHHHHHHHHHHcCCChHHHhccccchhhhccC
Q 018040 185 GLHD---LRSRLSIIPQDPT--MFE-GSVHNNLDP----LE-E----YADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249 (362)
Q Consensus 185 ~~~~---~r~~i~~v~Q~~~--l~~-~tv~enl~~----~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~ 249 (362)
+.++ +|+++-+|||||+ |-+ .||.+-|.- .. . ..++++.++++.+|++... .++.
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~----------r~RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT----------RNRY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH----------hhcC
Confidence 7654 6789999999996 333 477665531 11 1 1246678899999987532 2445
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 250 g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
+.++|||||||+|||||++.+|++++||||||+||...+.++.++++++. .+-+-++||||+..+.. ||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 66789999999999999999999999999999999999999999998753 47899999999999998 9999999999
Q ss_pred EEEEecChhHHhhcCCcHHHHHHH
Q 018040 327 LIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 327 ~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
+|+|.|+.++++++|...|.+-+-
T Consensus 504 kiVE~G~~~~if~~P~~~YT~~L~ 527 (534)
T COG4172 504 KIVEQGPTEAVFANPQHEYTRALL 527 (534)
T ss_pred EEeeeCCHHHHhcCCCcHHHHHHH
Confidence 999999999999999888876543
No 294
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-45 Score=317.23 Aligned_cols=220 Identities=25% Similarity=0.351 Sum_probs=192.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++||+++|+.+ .+++++|++|++|.+++|+|||||||||||.++++|+++++|+|+++|.++.+.+.+++.++++
T Consensus 1 MI~i~nv~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 1 MITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred CeeehhhhHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 37899999999865 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCc-ccHHhhcCcCC------C---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 195 IIPQDPTMFE-GSVHNNLDPLE------E---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 195 ~v~Q~~~l~~-~tv~enl~~~~------~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++-|+..+-. .||++-+.|++ + .+...+.++++-++|.+.-++.. .+||||||||..||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----------d~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----------DELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----------Hhcccchhhhhhhh
Confidence 9999987654 59999887643 1 12345678888888776555432 34799999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
..++++.+.++||||.++||......+++.++++. -++||++|-||++++.. +|+|+-|++|+++..|+|+|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~- 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP- 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH-
Confidence 99999999999999999999999999999998864 37999999999999987 999999999999999999999875
Q ss_pred CcHHHHHH
Q 018040 342 SSSFAQLV 349 (362)
Q Consensus 342 ~~~~~~~~ 349 (362)
+...+++
T Consensus 227 -~~L~eiy 233 (252)
T COG4604 227 -EILSEIY 233 (252)
T ss_pred -HHHHHHh
Confidence 3455544
No 295
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-44 Score=306.74 Aligned_cols=190 Identities=27% Similarity=0.396 Sum_probs=170.2
Q ss_pred CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHH
Q 018040 129 LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVH 208 (362)
Q Consensus 129 ~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 208 (362)
..++|+++||++.+||+++|.||||||||||+|+++-+.+|++|.+++.|++++.++++.+|++|+|+.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcC-----CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 209 NNLDPL-----EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 209 enl~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
+|+-|. .+.+.....+.++++++.+ +.+..+..+||||||||++|+|-|.--|+||+||||||+|
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999753 2345556667788887754 3445566779999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhc--CCceEEEEecChhhhh-hcCeEEEEeCCEE
Q 018040 284 DTATDNLIQHTLGQHF--SDCTVITIAHRITSVI-DSDMVLLLSYGLI 328 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~Dri~vl~~G~i 328 (362)
|+.+.+.|.++|..+. ++..+++|||+.+... .+|+++-+..|++
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999998765 4689999999999855 5999999999986
No 296
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-44 Score=365.50 Aligned_cols=213 Identities=22% Similarity=0.305 Sum_probs=176.2
Q ss_pred cEEEEEEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEeCCCCCH-HHHhc
Q 018040 115 EVDIHGLQVRYAP-HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAIDGIDISSIGL-HDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~-~~~r~ 191 (362)
.++++|++++|+. +..++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+. ..+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999952 12359999999999999999999999999999999999998 599999999999865443 34567
Q ss_pred CcEEEcCCC---CCCc-ccHHhhcCcCC--C------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCCh
Q 018040 192 RLSIIPQDP---TMFE-GSVHNNLDPLE--E------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255 (362)
Q Consensus 192 ~i~~v~Q~~---~l~~-~tv~enl~~~~--~------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSg 255 (362)
.++|+||++ .+++ .|+.+|+.+.. . .. .+++.++++.+++.. ...+....+|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT----------ASPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC----------CCcccccccCCH
Confidence 799999996 3554 59999996421 1 11 123455666665531 123445567999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++.. +++|||++||+++.+.. |||+++|++|+++..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 57899999999999987 99999999999999998
Q ss_pred hhHH
Q 018040 334 PTRL 337 (362)
Q Consensus 334 ~~~l 337 (362)
++++
T Consensus 489 ~~~~ 492 (506)
T PRK13549 489 NHNL 492 (506)
T ss_pred cccC
Confidence 8776
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.7e-44 Score=365.86 Aligned_cols=212 Identities=27% Similarity=0.431 Sum_probs=173.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEEC----------------
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAID---------------- 177 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~---------------- 177 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECCe--EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 4789999999653 5999999999999999999999999999999999997 7999999997
Q ss_pred -------CEeCC-------CCC---HHHHhcCcEEEcCC-CCCCc-ccHHhhcCcC---CCCC----HHHHHHHHHHcCC
Q 018040 178 -------GIDIS-------SIG---LHDLRSRLSIIPQD-PTMFE-GSVHNNLDPL---EEYA----DEEIWEALDKCQL 231 (362)
Q Consensus 178 -------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~tv~enl~~~---~~~~----~~~~~~~l~~~~l 231 (362)
|.++. ..+ ...+|+.++|+||+ +.+|+ .|+++|+.+. .... .+++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 32221 111 12356789999997 56776 4999998642 1111 2345667777776
Q ss_pred ChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEec
Q 018040 232 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAH 309 (362)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH 309 (362)
.+.. .+...+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||
T Consensus 159 ~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 5433 33456689999999999999999999999999999999999999999998863 3789999999
Q ss_pred Chhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 310 RITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 310 ~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+++.+.. ||||++|++|+++..|+++++...
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999987 999999999999999999887653
No 298
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-44 Score=304.21 Aligned_cols=212 Identities=24% Similarity=0.346 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC--CCCC----HHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI--SSIG----LHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i--~~~~----~~~ 188 (362)
+|+++++++.|+.. .+|.||+|+.+.||.+.++||||+|||||++.|.-+.-|.+|+..|-|... +..+ ..+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 48899999999876 489999999999999999999999999999999999999999999977643 3322 346
Q ss_pred HhcCcEEEcCCCCCCcc-cHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRLSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~-tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+|+++|+|||...+.+- ||.||+--. ...+ ..+..+.+++..+.++.++.| ..|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence 89999999999999875 999998421 1122 334556677777776666655 456999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||+|||||+++|++|++||||++|||+-...+.++++++. .|.|-++|||..+.++. |.||+.|++|+|+|.|+..-.
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 9999999999999999999999999999999999999876 47999999999999998 999999999999999998765
Q ss_pred hh
Q 018040 338 LE 339 (362)
Q Consensus 338 ~~ 339 (362)
-+
T Consensus 229 t~ 230 (242)
T COG4161 229 TE 230 (242)
T ss_pred cC
Confidence 43
No 299
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-43 Score=321.04 Aligned_cols=194 Identities=26% Similarity=0.316 Sum_probs=165.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . .+++.++
T Consensus 2 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 37899999999753 59999999999999999999999999999999999999999999999998642 1 2677899
Q ss_pred EEcCCCCCC-cccHHhhcCcCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 195 IIPQDPTMF-EGSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 195 ~v~Q~~~l~-~~tv~enl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
|++|++.++ ..|+++|+.+.. ...++++.++++.+++.+..+ ....+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 469999986422 223455777888888754322 23356899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
|+++||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 357999999999999988 99988854
No 300
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-44 Score=363.42 Aligned_cols=208 Identities=19% Similarity=0.300 Sum_probs=172.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i 193 (362)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++++
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999999763 28999999999999999999999999999999999999999999999998865443 3456789
Q ss_pred EEEcCCC---CCCc-ccHHhhcCcCCC------------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 194 SIIPQDP---TMFE-GSVHNNLDPLEE------------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 194 ~~v~Q~~---~l~~-~tv~enl~~~~~------------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
+|+||++ .+++ .|+++|+.+... .. .+++.++++.+++.. ...+..+.+|
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 410 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC----------HSVNQNITEL 410 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC----------CCccCccccC
Confidence 9999984 5665 499999864311 01 122445566655530 1234455678
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||||++|++|++++.
T Consensus 411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 57899999999999887 999999999999988
Q ss_pred cChhH
Q 018040 332 DSPTR 336 (362)
Q Consensus 332 g~~~~ 336 (362)
++..+
T Consensus 491 ~~~~~ 495 (510)
T PRK09700 491 LTNRD 495 (510)
T ss_pred ecCcc
Confidence 87633
No 301
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.3e-43 Score=397.76 Aligned_cols=215 Identities=25% Similarity=0.328 Sum_probs=187.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|+++.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....|+.+|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996433469999999999999999999999999999999999999999999999999864 4556788899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+||++.+++. |++||+.+.. ... ++++.+.++.+++.+.. +....+||||||||++||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 99999998865 9999997531 111 23456677777765433 34456689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|+.+|+++||||||+|||+.+++.+.+.|++..+++|||++||+++.+.. ||||++|++|+++..|+++++.++.
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999988778999999999999987 9999999999999999999987653
No 302
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.1e-43 Score=319.42 Aligned_cols=192 Identities=22% Similarity=0.302 Sum_probs=160.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999987654 345678999
Q ss_pred EcCCCCCCc-ccHHhhcCcCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
++|++.+++ .|+.+|+.+.. ......+.++++.+++.+..+ ....+||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998876 59999986421 112335677788887765432 334568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhhcCeEEE
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~Dri~v 322 (362)
+++||||||++||+.+++.+.+.+.+. .++.|+|++||+...+. |++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 999999999999999999999999875 45789999999984432 466654
No 303
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.3e-43 Score=323.07 Aligned_cols=198 Identities=22% Similarity=0.316 Sum_probs=161.9
Q ss_pred EEEEEEEEEeCCC-----CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC--CE--eCCCCCH
Q 018040 116 VDIHGLQVRYAPH-----LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID--GI--DISSIGL 186 (362)
Q Consensus 116 i~~~~l~~~y~~~-----~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~--g~--~i~~~~~ 186 (362)
++++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 2369999999999999999999999999999999999999999999998 42 5544443
Q ss_pred HH---H-hcCcEEEcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 187 HD---L-RSRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 187 ~~---~-r~~i~~v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
.. + ++.++|+||++.+++. |+++|+.+. .... .+++.++++.+++.+.. ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 32 2 4579999999988864 999998541 1111 23445666766664322 123466799
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEE
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLL 323 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl 323 (362)
||||||++|||||+.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. |||++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998864 47899999999999876 9999876
No 304
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-43 Score=347.98 Aligned_cols=207 Identities=25% Similarity=0.357 Sum_probs=177.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
-++++|++++|++- ++|++|||++.+||++||+|.||||||||+|+|+|.++|++|+|.+||++....++.+- ..-|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 58999999999875 59999999999999999999999999999999999999999999999999987776654 4569
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC-------CCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE-------YAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~-------~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+.|+|+..|++. ||.||+.+... .+. ++..++++.+++.. ..++. ..+||.||||.|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~-------~~~~~----v~~LsiaqrQ~V 154 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI-------DPDTL----VGDLSIAQRQMV 154 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCC-------Chhhh----hhhCCHHHHHHH
Confidence 999999999975 99999964332 122 33344555555531 13333 456999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
+||||+..+++++|||||||+|+....+.+++.+++++ +|.++|+|||+++++.. ||||.||+||+.+...+.
T Consensus 155 eIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 155 EIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999999875 68999999999999998 999999999999988773
No 305
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-43 Score=327.25 Aligned_cols=203 Identities=20% Similarity=0.274 Sum_probs=167.0
Q ss_pred cEEEEEEEEEeCC------------------CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 018040 115 EVDIHGLQVRYAP------------------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176 (362)
Q Consensus 115 ~i~~~~l~~~y~~------------------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 176 (362)
.++++||++.|.. ...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4778888777643 1235899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHhhcCcC---CCCCHHHH----HHHHHHcCCChHHHhccccchhhhcc
Q 018040 177 DGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPL---EEYADEEI----WEALDKCQLGNEVRKNEGKLESRVTE 248 (362)
Q Consensus 177 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~---~~~~~~~~----~~~l~~~~l~~~~~~~~~~l~~~~~~ 248 (362)
+|. +++++|++.+++ .|+.+|+.+. .....++. ..+++.+++. ..+..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcC
Confidence 984 356777776664 4999998542 12222222 2344444443 33445
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
.+.+|||||+||++||||++.+|++|||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 567899999999999999999999999999999999999999999998764 57899999999999887 9999999999
Q ss_pred EEEEecChhHHhhcC
Q 018040 327 LIEEFDSPTRLLENK 341 (362)
Q Consensus 327 ~i~~~g~~~~l~~~~ 341 (362)
++++.|+++++....
T Consensus 220 ~i~~~g~~~~~~~~~ 234 (264)
T PRK13546 220 KLKDYGELDDVLPKY 234 (264)
T ss_pred EEEEeCCHHHHHHHh
Confidence 999999999988763
No 306
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.8e-43 Score=394.06 Aligned_cols=216 Identities=16% Similarity=0.201 Sum_probs=185.3
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
...|+++|++++|+++...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.. ...+.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997633469999999999999999999999999999999999999999999999999864 34556788
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
|||+||++.+++ .|++||+.+.. ... ++.+.++++.+++.+..+ +...+||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 999999998886 49999996421 122 223445677777654433 34456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+.+|+++||||||+|||+.+++.+.+.|++.. +|+|||++||++++++. ||||++|++|+++..|+++++.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999998863 57999999999999988 999999999999999999999664
No 307
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.6e-43 Score=358.81 Aligned_cols=212 Identities=21% Similarity=0.277 Sum_probs=174.0
Q ss_pred cEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCCCCCH-HHHhc
Q 018040 115 EVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISSIGL-HDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~~~~-~~~r~ 191 (362)
.++++|++++|+++ ...+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ..+++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999421 23589999999999999999999999999999999999995 89999999999865433 45677
Q ss_pred CcEEEcCCC---CCCc-ccHHhhcCcCC-----C---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCCh
Q 018040 192 RLSIIPQDP---TMFE-GSVHNNLDPLE-----E---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255 (362)
Q Consensus 192 ~i~~v~Q~~---~l~~-~tv~enl~~~~-----~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSg 255 (362)
+++|+||++ .+++ .|+++|+.+.. . .. .+++.++++.+++.+ .........|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT----------ASPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC----------CCccCccccCCH
Confidence 899999996 4665 59999986521 0 11 123455666665521 123344567999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||||++|||||+.+|++|||||||++||+.+++.+.+.+++.. ++.|||++|||++.+.. |||+++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998764 57899999999999987 99999999999998776
Q ss_pred hhH
Q 018040 334 PTR 336 (362)
Q Consensus 334 ~~~ 336 (362)
.++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 543
No 308
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=307.47 Aligned_cols=204 Identities=24% Similarity=0.288 Sum_probs=174.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.+.+++++.+|++....+|+|+|++|.+||.+.++||||||||||+++++|+.+|..|+|.+||+.|..... .-|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 467889999998876669999999999999999999999999999999999999999999999999976543 359
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+|||++.|++. ++.+|+.|.- ... .+...+.+..+|+.+.-+ +...+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-----------~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-----------KYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-----------cceEeecchHHHHHHHHHH
Confidence 99999999986 9999998742 122 233456677777765433 3345689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC--CEEEEecCh
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSP 334 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~--G~i~~~g~~ 334 (362)
|+-+|++|+||||+++||.-+++.+++.+.+.. .++.+++|||+++++.. ++|++||+- |+|++.-++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999998754 47999999999999887 999999995 699886554
No 309
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.4e-43 Score=322.04 Aligned_cols=186 Identities=24% Similarity=0.359 Sum_probs=157.4
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC---CcccHHhhcCcC
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM---FEGSVHNNLDPL 214 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---~~~tv~enl~~~ 214 (362)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||++.+ ++.|+.+|+.+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 346789999999876 346899998542
Q ss_pred C---------C--CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 215 E---------E--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 215 ~---------~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
. . ...+++.++++.+++.+.. .....+||||||||++|||||+++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 0 1123466677777765433 3344568999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 284 DTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|+.+++.+.+.+++.. +++|+|++||+++.+.. ||+++++ +|++++.|+++++.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998864 47899999999999887 9999999 8999999999998654
No 310
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.4e-43 Score=315.08 Aligned_cols=173 Identities=27% Similarity=0.394 Sum_probs=144.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcCcEEEcCCC--CCCccc
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRLSIIPQDP--TMFEGS 206 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~--~l~~~t 206 (362)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|+||++ .+|..|
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 59999999999999999999999999999999999999999999999998852 22335677899999998 467779
Q ss_pred HHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 207 VHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 207 v~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
+++|+.+.. ... .+++.++++.+++.+.. ...+.+||||||||++|||||+++|+++|||||
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR-----------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999996521 122 23455667777665433 334567899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhh
Q 018040 280 TASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSV 314 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~ 314 (362)
|++||+.+++.+.+.|++.. +++|||++||+++.+
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 99999999999999998864 478999999998753
No 311
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-43 Score=317.89 Aligned_cols=209 Identities=20% Similarity=0.400 Sum_probs=181.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.+++++|+++|++. .|++|+||++++|++.|++|||||||||.+++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 48999999999875 59999999999999999999999999999999999999999999999998753 4567899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
|+|.+-.|++. ||.|.+.++. .... .++..++++.++.. ....+..+||.|++|++.+-.|
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~-----------~~~~kIk~LSKGnqQKIQfisa 144 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG-----------KKTKKIKELSKGNQQKIQFISA 144 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccc-----------cccchHHHhhhhhhHHHHHHHH
Confidence 99999999965 9999987643 2333 33445566655432 2234456689999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
++++|+++|||||+|||||.+.+.+.+.+.+.+ +|.|||++||+|+.++. ||+++.|++|+.|-.|+.+++...
T Consensus 145 viHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 145 VIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred HhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999999998865 68999999999999998 999999999999999999998763
No 312
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=8.2e-43 Score=319.73 Aligned_cols=192 Identities=24% Similarity=0.305 Sum_probs=156.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
+.+++++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 23 l~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~----- 90 (224)
T cd03220 23 LGILGRKGEVGEF--WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G----- 90 (224)
T ss_pred hhhhhhhhhcCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c-----
Confidence 7789999999764 699999999999999999999999999999999999999999999999876311 1
Q ss_pred EcCCCCC-CcccHHhhcCcCC---CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 196 IPQDPTM-FEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 196 v~Q~~~l-~~~tv~enl~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+...+ ...|+++|+.+.. .... +++.++++.+++.+. ......+||||||||++||||+
T Consensus 91 --~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~laral 157 (224)
T cd03220 91 --LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-----------IDLPVKTYSSGMKARLAFAIAT 157 (224)
T ss_pred --ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 11122 2459999986421 1111 234455555555433 2334467899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g 332 (362)
+++|+++||||||++||+.+++.+.+.+.+.. +++|||++||+++.+.. ||++++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998764 46899999999999886 9999999999998765
No 313
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.7e-43 Score=355.38 Aligned_cols=206 Identities=21% Similarity=0.337 Sum_probs=172.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i 193 (362)
.++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 588999984 279999999999999999999999999999999999999999999999998765543 356789
Q ss_pred EEEcCCC---CCCc-ccHHhhcCcCC-----C----CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 194 SIIPQDP---TMFE-GSVHNNLDPLE-----E----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 194 ~~v~Q~~---~l~~-~tv~enl~~~~-----~----~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
+|+||++ .++. .|+.+|+.+.. . .. .+++.++++.+++. +...++.+.+||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG 399 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQAIGLLSGG 399 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCchhhCCHH
Confidence 9999997 3554 59999986421 0 11 12345566666552 11234456679999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||||++|++|+++..|++
T Consensus 400 ekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~ 479 (501)
T PRK10762 400 NQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTR 479 (501)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999998864 57899999999999987 999999999999999988
Q ss_pred hHH
Q 018040 335 TRL 337 (362)
Q Consensus 335 ~~l 337 (362)
+++
T Consensus 480 ~~~ 482 (501)
T PRK10762 480 EQA 482 (501)
T ss_pred ccC
Confidence 775
No 314
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-43 Score=319.95 Aligned_cols=196 Identities=22% Similarity=0.315 Sum_probs=173.1
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHHHhcCcEEEcCCCCCCcc-cHHh
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHDLRSRLSIIPQDPTMFEG-SVHN 209 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~v~Q~~~l~~~-tv~e 209 (362)
+++|+.+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||.-+.+. ....-+++|||||||..||+. ||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 58899988789999999999999999999999999999999999877543 223347889999999999975 9999
Q ss_pred hcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 018040 210 NLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288 (362)
Q Consensus 210 nl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~ 288 (362)
|+.+..... ..+..++....|+.+.+++.|.. |||||||||||+|||+..|++|+||||.|+||...+
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~-----------LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT-----------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCc-----------cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999876544 55777888888887777766654 699999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 289 NLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 289 ~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
++++-.+..+.+ +.-|+.|||.++++.+ ||+|++|++||+.++|..+++++++
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999988754 4789999999999998 9999999999999999999998764
No 315
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3e-42 Score=360.27 Aligned_cols=213 Identities=25% Similarity=0.346 Sum_probs=182.3
Q ss_pred cEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH---
Q 018040 115 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL--- 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~--- 189 (362)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+..++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999642 2359999999999999999999999999999999999999999999999999988776543
Q ss_pred -hcCcEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 190 -RSRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 190 -r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
++.++|+||++.+|+. |+.||+.+.. ... +++..+.++.+++.+ .++..+.+||+||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-----------~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED-----------RVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhcCCcccCCHHHHHH
Confidence 5689999999999864 9999996421 111 223455566665543 3444556789999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
++|||||+++|+++||||||++||+.+++.+.+.++++. +++|+|++||+++.+..|||+++|++|++++.|++++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998864 579999999999988779999999999999999998875
No 316
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.3e-42 Score=362.22 Aligned_cols=198 Identities=24% Similarity=0.287 Sum_probs=168.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-cc
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT--AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GS 206 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~t 206 (362)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++. ...+++++||+|++.+++ .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 35999999999999999999999999999999999999885 899999999874 234567999999999986 49
Q ss_pred HHhhcCcCC------CCCH----HHHHHHHHHcCCChHHHhccccchhhhcc-CCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 207 VHNNLDPLE------EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTE-NGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 207 v~enl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
++||+.+.. ..++ +++.+.++.+++.+. .++.+++ ....||||||||++|||||+.+|++|+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC-------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 999996521 1222 234566777776432 3555543 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh-hhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 276 LDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-VID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|||||+|||+.++..+.+.|++.. +++|||+++|+++. +.. +|+|++|++|+++..|+++++.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 999999999999999999998865 58999999999984 555 9999999999999999998875
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=353.71 Aligned_cols=199 Identities=24% Similarity=0.325 Sum_probs=165.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++|
T Consensus 2 l~i~~ls~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGAK--PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCCc--EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 7899999999753 5999999999999999999999999999999999999999999999872 35999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCC---------------------------------------CCHHHHHHHHHHcCCChHH
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEE---------------------------------------YADEEIWEALDKCQLGNEV 235 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~---------------------------------------~~~~~~~~~l~~~~l~~~~ 235 (362)
+||++.++.. |+++|+.+... ....++.++++.+++.+..
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 9999988764 99999854210 0012233444444443211
Q ss_pred HhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh
Q 018040 236 RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315 (362)
Q Consensus 236 ~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 315 (362)
......+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||+|||+++.+.
T Consensus 149 ----------~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 149 ----------HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLN 216 (530)
T ss_pred ----------hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHH
Confidence 1234567999999999999999999999999999999999999999999974 4789999999999998
Q ss_pred h-cCeEEEEeCCEE-EEecChhHHhh
Q 018040 316 D-SDMVLLLSYGLI-EEFDSPTRLLE 339 (362)
Q Consensus 316 ~-~Dri~vl~~G~i-~~~g~~~~l~~ 339 (362)
. ||+|++|++|++ +..|++++.++
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHH
Confidence 7 999999999999 47899887764
No 318
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=353.26 Aligned_cols=208 Identities=21% Similarity=0.300 Sum_probs=172.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i 193 (362)
.++++|++++ .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+. ...++.+
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 4889999742 38999999999999999999999999999999999999999999999998865433 3456789
Q ss_pred EEEcCCCC---CCc-ccHHhhcCcCCC---------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 194 SIIPQDPT---MFE-GSVHNNLDPLEE---------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 194 ~~v~Q~~~---l~~-~tv~enl~~~~~---------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
+|+||++. +|+ .|+.+|+.+... .. .+++.++++.+++. .........+||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG 400 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK----------TPSREQLIMNLSGG 400 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc----------cCCccCccccCCHH
Confidence 99999973 564 699999864211 01 12344556655542 11234456679999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
|||||+|||||+.+|++|||||||++||+.+++.+.+.|+++. .+.|||++|||++.+.. |||+++|++|++++.|++
T Consensus 401 q~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~ 480 (501)
T PRK11288 401 NQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480 (501)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999998764 47899999999999987 999999999999999988
Q ss_pred hHHh
Q 018040 335 TRLL 338 (362)
Q Consensus 335 ~~l~ 338 (362)
++..
T Consensus 481 ~~~~ 484 (501)
T PRK11288 481 EQAT 484 (501)
T ss_pred ccCC
Confidence 7653
No 319
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-42 Score=342.90 Aligned_cols=202 Identities=21% Similarity=0.288 Sum_probs=167.7
Q ss_pred cEEEEEEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
.++++|++++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 699999999997642 3599999999999999999999999999999999999999999999999752
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC---CCCHH----HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE---EYADE----EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~---~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
++.+.+.+++ .|+++|+.+.. ....+ .+.++++.+++.+.. ...+.+||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~l-----------d~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFI-----------YQPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHh-----------hCCcccCCHHHHHHHHHHH
Confidence 1222333443 49999986421 22222 234566666665443 3345678999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||+.+|++|||||||++||+.++..+.+.|.+.. +++|||++||+++.+.. ||++++|++|++++.|+++++..+
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999999999999999999998764 47899999999999987 999999999999999999998765
No 320
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-42 Score=310.11 Aligned_cols=188 Identities=24% Similarity=0.374 Sum_probs=156.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. .++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 2 l~~~~l~~~~~~~--~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQK--NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECCc--EEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 7899999999652 344 599999999999999999999999999999999999999999999875432 346999
Q ss_pred EcCCCCC-CcccHHhhcCcCCC--CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 196 IPQDPTM-FEGSVHNNLDPLEE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 196 v~Q~~~l-~~~tv~enl~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
++|++.+ +..|+++|+.+... ...+++.++++.+++.+. ..+.+.+||||||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDL-----------LDEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhh-----------hccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 45799999965321 124456666777766433 334566799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhhcCeEE
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVIDSDMVL 321 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~Dri~ 321 (362)
++||||||++||+.+++.+.+.+++. .+++|+|++||+++.+..||-|.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999754 45799999999999999988763
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=352.10 Aligned_cols=202 Identities=17% Similarity=0.289 Sum_probs=172.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++
T Consensus 318 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred ceEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 369999999999753 5999999999999999999999999999999999999999999999872 469
Q ss_pred EEEcCCCC--CCc-ccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 194 SIIPQDPT--MFE-GSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 194 ~~v~Q~~~--l~~-~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
||+||++. +++ .|+++|+.... ...++++.++++.+++.. ......+.+||||||||++||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQ----------DDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCCh----------hHhcCcccccCHHHHHHHHHHHHHh
Confidence 99999974 443 59999986432 223456677788877631 1233455678999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHhhc
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLLEN 340 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~-~~g~~~~l~~~ 340 (362)
.+|++|||||||++||+.+.+.+.+.+++. +.|||+|||+++.+.. ||||++|++|+++ ..|++.++++.
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999999999876 3599999999999987 9999999999998 78888887654
No 322
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-42 Score=327.05 Aligned_cols=231 Identities=22% Similarity=0.311 Sum_probs=194.9
Q ss_pred cEEEEEEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~--~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~ 187 (362)
-++++|+++.|. +....++++|||+|++||.+||||+||||||-..+.++|+++- .+|+|.++|.++-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 489999999885 3334689999999999999999999999999999999999974 379999999999888877
Q ss_pred HHhc----CcEEEcCCCCC--Ccc-cHHh----hcCcCC----CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 188 DLRS----RLSIIPQDPTM--FEG-SVHN----NLDPLE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 188 ~~r~----~i~~v~Q~~~l--~~~-tv~e----nl~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
++|+ +|++|||+|.. -+- |+.. -+.... ....+++.+.|+.+|+.+.- ..+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--------~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--------KRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh--------hhhhhCCcc
Confidence 7653 69999999953 232 5443 333322 23456778889999986532 234556778
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
|||||||||.||.||+.+|++||.||||.+||...+.+|.++|+++. .|..+++||||+..+.. ||||.||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999999864 47899999999999998 9999999999999
Q ss_pred EecChhHHhhcCCcHHHHHHHHHh
Q 018040 330 EFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 330 ~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|.|+.++++..+...|.+.+....
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~ae 261 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAE 261 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcC
Confidence 999999999999889988776544
No 323
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.3e-42 Score=335.15 Aligned_cols=206 Identities=22% Similarity=0.349 Sum_probs=177.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i 193 (362)
.+++++++++|++- .++++|||+|++||+.||+|+||||||||+++|.|+|+|++|+|++||+++.-.++. ..|..|
T Consensus 4 ~l~~~~itK~f~~~--~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPGV--VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCCE--EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 48999999999843 589999999999999999999999999999999999999999999999998766655 467789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCC------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEE------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+|+|++.|++. ||.||+....+ .+ .+++.+..++.|+. -...+....||-||||||.
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~-----------vdp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP-----------VDPDAKVADLSVGEQQRVE 150 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCC-----------CCccceeecCCcchhHHHH
Confidence 999999999976 99999965432 12 23444555555543 2334445669999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|-+||+++|++||||||||-|-|...+.+++.++++. +|+|||+|||+++++.. |||+-||..||++..-.
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999865 68999999999999998 99999999999876554
No 324
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.5e-42 Score=332.13 Aligned_cols=185 Identities=26% Similarity=0.400 Sum_probs=157.3
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHhhcCcCC---CCC----H
Q 018040 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----D 219 (362)
Q Consensus 148 ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~ 219 (362)
|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++|+||++.+|+. |+++|+.+.. ... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876553 36789999999999875 9999997531 112 2
Q ss_pred HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc
Q 018040 220 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299 (362)
Q Consensus 220 ~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~ 299 (362)
+++.++++.+++.+..+ ..+.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|++..
T Consensus 79 ~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 34566777777654433 3456689999999999999999999999999999999999999999998764
Q ss_pred --CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHH
Q 018040 300 --SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 300 --~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
.++|+|+|||+++.+.. ||||++|++|++++.|+++++++.+...+
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 37899999999999887 99999999999999999999988754444
No 325
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.1e-42 Score=352.77 Aligned_cols=208 Identities=20% Similarity=0.294 Sum_probs=172.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-HhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 193 (362)
.++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 599999983 1699999999999999999999999999999999999999999999999987665543 45679
Q ss_pred EEEcCCC---CCCc-ccHHhhcCcC-----CC--CC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 194 SIIPQDP---TMFE-GSVHNNLDPL-----EE--YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 194 ~~v~Q~~---~l~~-~tv~enl~~~-----~~--~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+|+||++ .+|+ .|+.+|+... .. .. .+.+.++++.+++.. ...+....+|||||||
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~kq 410 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAARTLSGGNQQ 410 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCccccCCcHHHH
Confidence 9999985 3665 4899997421 00 01 123445566655430 2334556679999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++. ++.|||+|||+++.+.. |||+++|++|+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998764 47899999999999987 999999999999999998876
Q ss_pred hh
Q 018040 338 LE 339 (362)
Q Consensus 338 ~~ 339 (362)
..
T Consensus 491 ~~ 492 (510)
T PRK15439 491 NV 492 (510)
T ss_pred CH
Confidence 53
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-41 Score=351.05 Aligned_cols=210 Identities=22% Similarity=0.301 Sum_probs=165.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +.++|
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 69999999999722 3599999999999999999999999999999999999999999999975 13699
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC-C----------------CH----------HHHHHHHHHcCCCh---HHHhcc--cc
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE-Y----------------AD----------EEIWEALDKCQLGN---EVRKNE--GK 241 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~-~----------------~~----------~~~~~~l~~~~l~~---~~~~~~--~~ 241 (362)
|+||++.+++. |+.+|+.+... . .. .++.+.++.++.++ .+.... -+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC
Confidence 99999998865 99999864210 0 00 00111111111111 011000 11
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 320 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri 320 (362)
++ .......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|++.. .|||+|||+++.+.. ||+|
T Consensus 154 l~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 154 CP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred CC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeE
Confidence 21 1345667899999999999999999999999999999999999999999998763 599999999999988 9999
Q ss_pred EEEeCCEEE-EecChhHHhh
Q 018040 321 LLLSYGLIE-EFDSPTRLLE 339 (362)
Q Consensus 321 ~vl~~G~i~-~~g~~~~l~~ 339 (362)
++|++|+++ ..|++++..+
T Consensus 231 ~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 231 LELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred EEEeCCEEEEecCCHHHHHH
Confidence 999999986 6788887654
No 327
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.4e-42 Score=351.88 Aligned_cols=210 Identities=23% Similarity=0.296 Sum_probs=169.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..||
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 58999999999732 3599999999999999999999999999999999999999999999875 23699
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC------------------C-C--------HHHHHHHHHHcCCChHHH---hcc--cc
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE------------------Y-A--------DEEIWEALDKCQLGNEVR---KNE--GK 241 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~------------------~-~--------~~~~~~~l~~~~l~~~~~---~~~--~~ 241 (362)
|+||++.+++. |++||+.+... . . ..++.++++.++.++... ... .+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 99999988864 99999864210 0 0 112344455555432111 110 12
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 320 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri 320 (362)
++ ..+....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||+|
T Consensus 152 l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 152 CP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred CC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeE
Confidence 22 135567889999999999999999999999999999999999999999999876 3599999999999988 9999
Q ss_pred EEEeCCEEE-EecChhHHhh
Q 018040 321 LLLSYGLIE-EFDSPTRLLE 339 (362)
Q Consensus 321 ~vl~~G~i~-~~g~~~~l~~ 339 (362)
++|++|+++ ..|+++++.+
T Consensus 229 ~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 999999976 6788887654
No 328
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1e-41 Score=379.90 Aligned_cols=210 Identities=20% Similarity=0.267 Sum_probs=179.1
Q ss_pred cEEEEEEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHH
Q 018040 115 EVDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~--~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 189 (362)
.++++||+++|+ ++.+.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 489999999995 223469999999999999999999999999999999999997 78899999999874 246
Q ss_pred hcCcEEEcCCCCCC-cccHHhhcCcCC------CCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 190 RSRLSIIPQDPTMF-EGSVHNNLDPLE------EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 190 r~~i~~v~Q~~~l~-~~tv~enl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
|+.+|||+|++.++ ..||+||+.+.. ..++ +.+.++++.+++.+. .++.+++.+.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHh
Confidence 78899999997655 469999997521 1222 345677888877543 56777777779999999
Q ss_pred HHHHHHHHhcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHhh-cCCceEEEEecChhhh--hhcCeEEEEeCC-EEEEecC
Q 018040 259 QLVCLARVLLKKSK-VLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSV--IDSDMVLLLSYG-LIEEFDS 333 (362)
Q Consensus 259 QRv~iAral~~~p~-illLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~--~~~Dri~vl~~G-~i~~~g~ 333 (362)
||++|||||+.+|+ +|+|||||||||+.++..+.+.|++. .+|+|||+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999986 4679999999999874 349999999997 9999998
Q ss_pred hh
Q 018040 334 PT 335 (362)
Q Consensus 334 ~~ 335 (362)
+.
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 74
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.2e-41 Score=289.68 Aligned_cols=143 Identities=27% Similarity=0.468 Sum_probs=134.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|. +.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999984 36999
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
+|| ||+||+||++|||||+++|+++|
T Consensus 68 ~~~------------------------------------------------------lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 68 FEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred Ecc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 69999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 276 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
|||||++||+.++..+.+.+++. ++|+|++||+++.+.. ||++++|++||
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999876 4799999999999977 99999999986
No 330
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=343.20 Aligned_cols=209 Identities=20% Similarity=0.338 Sum_probs=169.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 192 (362)
..|+++|++++| +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 249 ~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 249 VILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred cEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 359999999974 2489999999999999999999999999999999999999999999999998766544 34677
Q ss_pred cEEEcCCCC---CCc-ccHHhh-----cCcCC---C-CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCCh
Q 018040 193 LSIIPQDPT---MFE-GSVHNN-----LDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 255 (362)
Q Consensus 193 i~~v~Q~~~---l~~-~tv~en-----l~~~~---~-~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSg 255 (362)
++|+||++. +|+ .|+.+| +.... . .. .+++.+.++.+++.+ ...+..+.+|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 394 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT----------PGHRTQIGSLSG 394 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC----------CCcccccccCCc
Confidence 999999853 555 366665 32110 0 11 122344455544421 123555678999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||||++||||++.+|+||||||||+|||+.+++.+.+.++++. ++.|||++||+++.+.. |||+++|++|+++..++
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998754 57999999999999987 99999999999998876
Q ss_pred hhH
Q 018040 334 PTR 336 (362)
Q Consensus 334 ~~~ 336 (362)
.++
T Consensus 475 ~~~ 477 (491)
T PRK10982 475 TKT 477 (491)
T ss_pred ccc
Confidence 643
No 331
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.5e-41 Score=313.98 Aligned_cols=192 Identities=22% Similarity=0.278 Sum_probs=154.4
Q ss_pred EEeCCCCCceeeeeeEEEe-----CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 123 VRYAPHLPLVLRGLTCTFL-----GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~-----~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
|+|++.. ..+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+|
T Consensus 1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 3565443 36777888876 79999999999999999999999999999999999984 589999
Q ss_pred CCCCC-CcccHHhhcCcCCC-C--CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 198 QDPTM-FEGSVHNNLDPLEE-Y--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 198 Q~~~l-~~~tv~enl~~~~~-~--~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|++.. +..|+++|+..... . ......++++.+++.+ .....+.+||||||||++|||||+.+|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQ-----------ILDREVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHH-----------HhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99875 56799999854211 1 1223445666665543 33445567899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEE--EecChhHHh
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE--EFDSPTRLL 338 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~--~~g~~~~l~ 338 (362)
+||||||++||+.++..+.+.|++.. .++|||+|||+++.+.. ||+|++|+++..+ ..++|.++.
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999999999999999999998864 37899999999999987 9999999775433 456666654
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.8e-41 Score=344.42 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=166.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCCC-CCHHHHhc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISS-IGLHDLRS 191 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~-~~~~~~r~ 191 (362)
..++++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|.++.. ......++
T Consensus 259 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 259 PRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred ceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 359999999999753 599999999999999999999999999999999999876 69999999987632 22334567
Q ss_pred CcEEEcCCCCCCc---ccHHhhcCcC--C------CCC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 192 RLSIIPQDPTMFE---GSVHNNLDPL--E------EYA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 192 ~i~~v~Q~~~l~~---~tv~enl~~~--~------~~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
+++|++|++.++. .++.+++.+. . ... .+++.++++.+++.+. ....++.+|||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq 406 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQ 406 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHH
Confidence 8999999986542 3666665321 0 111 2345667777766431 2233456689999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CC-ceEEEEecChhhhhh--cCeEEEEeCCEEEEec
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SD-CTVITIAHRITSVID--SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~-~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g 332 (362)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. ++ .|||++||+++.+.. ||++++|++|++++.-
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999999999998864 34 479999999999974 8999999999998754
No 333
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6.1e-41 Score=348.81 Aligned_cols=200 Identities=21% Similarity=0.305 Sum_probs=171.5
Q ss_pred CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc
Q 018040 129 LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG 205 (362)
Q Consensus 129 ~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 205 (362)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+++.+|||+|++.+++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 356999999999999999999999999999999999999885 799999999874 34678889999999998865
Q ss_pred -cHHhhcCcCC------CCC----HHHHHHHHHHcCCChHHHhccccchhhhccC--CCCCChhHHHHHHHHHHhcCCCC
Q 018040 206 -SVHNNLDPLE------EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTEN--GENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 206 -tv~enl~~~~------~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~--g~~LSgGqrQRv~iAral~~~p~ 272 (362)
||+||+.+.. ..+ .+++.+.++.+++.+ ..++.+++. +..||||||||++|||||+.+|+
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~ 186 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-------CANTRIGVPGRVKGLSGGERKRLAFASELLTDPP 186 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-------cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC
Confidence 9999996421 112 234566777776643 357788873 47899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChh-hhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRIT-SVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+++|||||+|||+.+...+.+.+++.. +++|+|+++|+++ .+.. +|++++|++|+++..|+++++.
T Consensus 187 vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 999999999999999999999999865 4799999999996 5554 9999999999999999998874
No 334
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.3e-40 Score=302.85 Aligned_cols=183 Identities=20% Similarity=0.224 Sum_probs=148.5
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-ECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHh
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-IDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHN 209 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~e 209 (362)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.+++.+|+. |+++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777532 12345667765 9999
Q ss_pred hcCcCC---CCCHHHHHHHH-HHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 210 NLDPLE---EYADEEIWEAL-DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 210 nl~~~~---~~~~~~~~~~l-~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
|+.+.. ....++..+.+ +..++ +...+.....||+|||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQL-----------EQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCh-----------hHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 996531 22333332222 22222 2223344566899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 286 ATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 286 ~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
.+++.+.+.+.+..+++|+|++||+++.+.. ||++++|++|++++.++.++..
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 9999999988654456799999999999976 9999999999999999988874
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.1e-41 Score=314.87 Aligned_cols=205 Identities=21% Similarity=0.288 Sum_probs=160.7
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEeCCCCCHH
Q 018040 119 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-----------IDGIDISSIGLH 187 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~~ 187 (362)
.+|+++|+++. .+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++......
T Consensus 4 ~~~~~~y~~~~-~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNS-FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcc-hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 46889997542 5899999 4999999999999999999999999999999999996 788887654322
Q ss_pred HHhc--CcEEEcCCCCCCcccHHhhcCcC-CC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 188 DLRS--RLSIIPQDPTMFEGSVHNNLDPL-EE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 188 ~~r~--~i~~v~Q~~~l~~~tv~enl~~~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
..+. .++|++|++.+++.++.+|+... .. ...+...++++.+++.+. ....+.+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 2222 47899998877665544444321 11 123456677777766433 334556789999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE---ecChhHH
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE---FDSPTRL 337 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~---~g~~~~l 337 (362)
|||++.+|+++||||||++||+.+++.+.+.+++.. +++|||++||+++.+.. ||+|++|+ |++.+ .|.|...
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~~~~~~~~~ 228 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYGVVTLPKSV 228 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcceeeecCccH
Confidence 999999999999999999999999999999998865 47999999999999987 99999995 55654 3445443
No 336
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.1e-41 Score=287.46 Aligned_cols=228 Identities=25% Similarity=0.345 Sum_probs=181.6
Q ss_pred EEEEEEEEEeCC-------CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH
Q 018040 116 VDIHGLQVRYAP-------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 116 i~~~~l~~~y~~-------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~ 188 (362)
++++|+++.|.. ....+++.|||++++|+.+||+|.||||||||.|+|+|+++|++|+|++||+++.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 677788776632 2234789999999999999999999999999999999999999999999999986555545
Q ss_pred HhcCcEEEcCCCCC-Cc-----ccHHh-----hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 189 LRSRLSIIPQDPTM-FE-----GSVHN-----NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l-~~-----~tv~e-----nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
..++|-++||||.- |+ |++.| |-.+......+++.+.++.+|+-.. ..+-++..||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pd----------han~~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPD----------HANYYPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcc----------ccccchhhcCchh
Confidence 55779999999953 22 12211 1111112234667788888887432 2233456689999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh--cCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~ 334 (362)
|||||+||||+.+|+|+|.||+.++||...+.++.+++.++ +.|..-|.|+.++..++. +|.|+||++|+++|.|++
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999999999999999999999999999999988764 357899999999999999 999999999999999999
Q ss_pred hHHhhcCCcHH-HHHHHHHh
Q 018040 335 TRLLENKSSSF-AQLVAEYT 353 (362)
Q Consensus 335 ~~l~~~~~~~~-~~~~~~~~ 353 (362)
.+++..|.... .++++...
T Consensus 235 ~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 235 ADVLASPLHELTKRLIESHF 254 (267)
T ss_pred hhhhcCCccHHHHHHHHHHh
Confidence 99999876554 44444433
No 337
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-40 Score=289.75 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=189.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC-EeCCCCCHHHH-hcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG-IDISSIGLHDL-RSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g-~~i~~~~~~~~-r~~ 192 (362)
.++++|++++|++- .+|+++||++.+||.-+|+|||||||||++.+|.|-.+|+.|+|+++| .+++.++...+ |..
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 58999999999876 499999999999999999999999999999999999999999999999 89999987766 456
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcC------------CC---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPL------------EE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~------------~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
||-=||.|..|.. ||+||+... .+ ....++.+.|...+|.+..+... ..||.|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A-----------~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA-----------ALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh-----------hhhccc
Confidence 9999999999976 999998531 11 12346788888888876655433 347999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
|||++.|+..++++|++|+||||++|+-.+.....-++++.+..+++|++|.||+.++.. ||+|-||+.|.|...|+.+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 999999999999999999999999999988888889999998888999999999999998 9999999999999999999
Q ss_pred HHhhcC
Q 018040 336 RLLENK 341 (362)
Q Consensus 336 ~l~~~~ 341 (362)
++-+++
T Consensus 232 ~v~~dp 237 (249)
T COG4674 232 EVQNDP 237 (249)
T ss_pred HhhcCc
Confidence 997664
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6e-40 Score=337.73 Aligned_cols=201 Identities=20% Similarity=0.258 Sum_probs=165.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 321 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 321 KVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred eEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 469999999999753 599999999999999999999999999999999999999999999854 2 159
Q ss_pred EEEcCCCC-CCc-ccHHhhcCcCCC---CC--HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 194 SIIPQDPT-MFE-GSVHNNLDPLEE---YA--DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 194 ~~v~Q~~~-l~~-~tv~enl~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||+||++. +++ .|+.+|+.+... .. ..+..++++.+++... .....+.+|||||||||+||||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 99999973 554 499999865321 11 2234456666665321 2234456789999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeC-CEEE-EecChhHHhh
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSY-GLIE-EFDSPTRLLE 339 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~-G~i~-~~g~~~~l~~ 339 (362)
|+.+|++|||||||++||+.+.+.+.+.|++.. .|||+|||+++.+.. ||+|++|++ |+++ ..|+.++..+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999998873 489999999999987 999999997 5876 4577766543
No 339
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.2e-40 Score=336.90 Aligned_cols=202 Identities=20% Similarity=0.248 Sum_probs=167.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 469999999999753 599999999999999999999999999999999999999999999954 2 159
Q ss_pred EEEcCCC-CCCc-ccHHhhcCcCCC-----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 194 SIIPQDP-TMFE-GSVHNNLDPLEE-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 194 ~~v~Q~~-~l~~-~tv~enl~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||+||++ .+++ .|+++|+.+... ....+...+++.+++... ..+..+.+||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5655 499999865321 112334456666665321 1234456789999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeC-CEEE-EecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSY-GLIE-EFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~-G~i~-~~g~~~~l~~~ 340 (362)
++.+|++|||||||++||+.+...+.+.|.+.. .|||+|||+++.+.. ||+|++|++ |++. ..|++++.++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999998763 489999999999987 999999996 7876 47887776654
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=338.65 Aligned_cols=200 Identities=21% Similarity=0.334 Sum_probs=166.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~~--~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 369999999999753 5999999999999999999999999999999999999999999999741 259
Q ss_pred EEEcCCC--CCCc-ccHHhhcCc-CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDP--TMFE-GSVHNNLDP-LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~--~l~~-~tv~enl~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
||++|++ .+.. .|+.+++.. .......++.+++..+++... ........|||||||||+|||||+.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 3333 377777632 112234556677777776421 1233445689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLL 338 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~-~~g~~~~l~ 338 (362)
+|++|||||||++||+.+...+.+.|.+. . .|||+||||++.+.. ||||++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999887 3 499999999999987 9999999999997 678888763
No 341
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-39 Score=282.05 Aligned_cols=154 Identities=38% Similarity=0.547 Sum_probs=142.9
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
++++++.|++. ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.......+++.++|+|
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 68999999754 5999999999999999999999999999999999999999999999999887665666778899999
Q ss_pred CCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEe
Q 018040 198 QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 277 (362)
Q Consensus 198 Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLD 277 (362)
| ||+||+||++||||++.+|++++||
T Consensus 80 q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 80 Q------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred e------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9 7999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 278 EATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 278 EPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
|||++||+.++..+.+.+.+..+ ++|++++||+++.+.. ||++++|++|+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999987643 5899999999999998 79999999975
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.7e-40 Score=290.23 Aligned_cols=154 Identities=23% Similarity=0.246 Sum_probs=135.8
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcC
Q 018040 119 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQ 198 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 198 (362)
.|++++|++. .+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~~--~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGVF--FLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECCE--EEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 5789999764 588884 9999999999999999999999999999999999999999853 788988
Q ss_pred CCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeC
Q 018040 199 DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 278 (362)
Q Consensus 199 ~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDE 278 (362)
++. ||||||||++||||++.+|++++|||
T Consensus 69 ~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 69 YID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred cCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 652 69999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhc-CC-ceEEEEecChhhhhh-cCeEEEEeCCEEEE--ecChhHHh
Q 018040 279 ATASVDTATDNLIQHTLGQHF-SD-CTVITIAHRITSVID-SDMVLLLSYGLIEE--FDSPTRLL 338 (362)
Q Consensus 279 Pts~LD~~~~~~i~~~l~~~~-~~-~tvi~itH~l~~~~~-~Dri~vl~~G~i~~--~g~~~~l~ 338 (362)
||++||+.+++.+.+.+.+.. ++ .|+|++||+++.+.. ||++++|+++-.+. .|.|....
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999999999999998764 44 899999999999987 99999999886552 26655443
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.7e-39 Score=338.45 Aligned_cols=199 Identities=18% Similarity=0.250 Sum_probs=163.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999643 3589999999999999999999999999999999999999999999865 2369
Q ss_pred EEEcCCCCCCcccHHhhcC--c---CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 194 SIIPQDPTMFEGSVHNNLD--P---LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~--~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
||++|++. ...++.+|.. + .....++++.++++.+++... .....+.+||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHHh
Confidence 99999863 2223333321 1 122345677788888887532 123345678999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHH
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRL 337 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~-~~g~~~~l 337 (362)
.+|++|||||||++||+.+...+.+.+.+. + .|||+|||+++.+.. |||+++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999888765 3 499999999999987 9999999999998 56766553
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.5e-39 Score=335.53 Aligned_cols=192 Identities=21% Similarity=0.280 Sum_probs=162.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. .|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ + ++
T Consensus 339 ~~l~~~~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 339 TLVEYPDLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred eEEEEcceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 359999999999652 5999999999999999999999999999999999999999999985 1 59
Q ss_pred EEEcCCCCCC-cccHHhhcCcCC-CC-CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 194 SIIPQDPTMF-EGSVHNNLDPLE-EY-ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 194 ~~v~Q~~~l~-~~tv~enl~~~~-~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
+|+||++.++ ..|+++|+.+.. .. ......++++.+++.+.. .....+|||||||||+|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-----------~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-----------DKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998765 469999986531 11 123445677777765433 344566899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|++|||||||++||+.++..+.+.|++.. .++|+|+||||++.+.. ||||++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999999864 37899999999999987 999999965 7777666
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-39 Score=336.01 Aligned_cols=198 Identities=22% Similarity=0.249 Sum_probs=156.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
|+++|++++|++. ++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++|
T Consensus 2 i~i~nls~~~g~~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGVR--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 7899999999754 59999999999999999999999999999999999999999999998742 3778
Q ss_pred EcCCCCCCcccHHhhcCcC----------------------------------CCCCHHHHHHHHHHcCCChHHHhcccc
Q 018040 196 IPQDPTMFEGSVHNNLDPL----------------------------------EEYADEEIWEALDKCQLGNEVRKNEGK 241 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 241 (362)
++|++..+..++.+++... ......++.++++.+|+.+
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-------- 140 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-------- 140 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc--------
Confidence 8876433333433322100 0001122333444444321
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 320 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri 320 (362)
........+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.+. +.|||+||||.+.+.. ||+|
T Consensus 141 --~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i 216 (638)
T PRK10636 141 --EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKI 216 (638)
T ss_pred --hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEE
Confidence 2234456679999999999999999999999999999999999999999999875 4699999999999987 9999
Q ss_pred EEEeCCEEEE-ecChhHHh
Q 018040 321 LLLSYGLIEE-FDSPTRLL 338 (362)
Q Consensus 321 ~vl~~G~i~~-~g~~~~l~ 338 (362)
++|++|+++. .|++....
T Consensus 217 ~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEEeCCEEEEecCCHHHHH
Confidence 9999999974 67776554
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.7e-39 Score=336.63 Aligned_cols=198 Identities=21% Similarity=0.316 Sum_probs=164.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++. ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ +||
T Consensus 319 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 59999999999753 5999999999999999999999999999999999999999999998 5332 599
Q ss_pred EEcCCC-CCCc-ccHHhhcCcCCC-C--C--HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 195 IIPQDP-TMFE-GSVHNNLDPLEE-Y--A--DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 195 ~v~Q~~-~l~~-~tv~enl~~~~~-~--~--~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
|++|++ .+++ .|+.+|+..... . . ..++.+.+..+++... .......+|||||||||+|||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK----------RAMTPVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH----------HHhChhhhCCHHHHHHHHHHHHH
Confidence 999986 4555 499999864211 1 1 3345566666665321 22334556899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEe-CCEEEE-ecChhHH
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS-YGLIEE-FDSPTRL 337 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~-~G~i~~-~g~~~~l 337 (362)
+.+|++|||||||++||+.+...+.+.+++. +.|||+||||.+.+.. ||+|++|+ +|+++. .|+..+.
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999999999999999999876 4599999999999987 99999998 899877 4666554
No 347
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-39 Score=290.12 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=172.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~ 192 (362)
.-|+++||+++|+++ ++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+.....+. .++|++
T Consensus 30 ~li~l~~v~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 459999999999875 69999999999999999999999999999999999999999999999999887776 889999
Q ss_pred cEEEcCCCC-CC--cccHHhhcC--------cCC-CCCHHH---HHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 193 LSIIPQDPT-MF--EGSVHNNLD--------PLE-EYADEE---IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 193 i~~v~Q~~~-l~--~~tv~enl~--------~~~-~~~~~~---~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
||+|+-.-. -| ..+++|-+. .+. ..++++ ....++.+++.+. .++.-.+||-||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-----------a~r~~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-----------ADRPFGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-----------ccCchhhcCHhH
Confidence 999986432 12 336666552 112 344433 3445666665543 333445689999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc---CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF---SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
|||+.|||||+++|++||||||++|||...++.+.+.+.+.. .+.++|+|||+.+++.. .++++.+++|+++..|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999999998864 25799999999999988 69999999999998774
No 348
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=286.07 Aligned_cols=215 Identities=24% Similarity=0.326 Sum_probs=173.2
Q ss_pred EEEEEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 117 DIHGLQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 117 ~~~~l~~~y~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
.+.|..+.|... .+++|+++|++|++|+++.|+|.||||||||+++|+|-+.|++|+|.|||+++..++..+....+
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~l 82 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLL 82 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHH
Confidence 345555555332 34699999999999999999999999999999999999999999999999999999988877889
Q ss_pred EEEcCCCC--CC-cccHHhhcCcCCC------CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 194 SIIPQDPT--MF-EGSVHNNLDPLEE------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 194 ~~v~Q~~~--l~-~~tv~enl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+-|||+|. .+ +.|+.||+..... .......+..+ ...+.+..++.|++..++.+..-|||||||-++++
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~--~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS--SFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHH--HHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 99999995 34 4599999954211 11100111100 11233445666788888888888999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
.|.++.|+||+|||-|++|||.+.+.+++.-.+.- .+-|.+||||+++.+-. -+|.++|++|+|+-+-+
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999999999999999999887743 35799999999998776 79999999999997644
No 349
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.9e-38 Score=278.58 Aligned_cols=155 Identities=23% Similarity=0.258 Sum_probs=129.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
.++|+|+||++++|++++|+||||||||||+++++ +++|++.++|..- .. .+++++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-KF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-cc----ccccEEEEhH-----------
Confidence 46899999999999999999999999999999986 3689999987521 11 2345888877
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC--CCEEEEeCCCCCCCHHH
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK--SKVLVLDEATASVDTAT 287 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~--p~illLDEPts~LD~~~ 287 (362)
.++++.+++... .+++++.+||||||||++||||++.+ |+++||||||++||+.+
T Consensus 68 -------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 245666665321 24456678999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 288 DNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 288 ~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
.+.+.+.+++.. .++|||++||+++.+..||++++|++|+
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 999999998764 5799999999999887799999997643
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.7e-38 Score=326.72 Aligned_cols=197 Identities=24% Similarity=0.250 Sum_probs=154.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~~--~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSDA--PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEEeeEEEEeCCc--eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 48999999999753 59999999999999999999999999999999999999999999998731 256
Q ss_pred EEcCCCCCC-cccHHhhcCcCC-----------------------------------------CCCHHHHHHHHHHcCCC
Q 018040 195 IIPQDPTMF-EGSVHNNLDPLE-----------------------------------------EYADEEIWEALDKCQLG 232 (362)
Q Consensus 195 ~v~Q~~~l~-~~tv~enl~~~~-----------------------------------------~~~~~~~~~~l~~~~l~ 232 (362)
+++|.+... .+++.+++.... .....++.++++.+++.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 677654321 134444321000 00011222333333321
Q ss_pred hHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChh
Q 018040 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 312 (362)
Q Consensus 233 ~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 312 (362)
......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|++.. .|||+||||..
T Consensus 150 -------------~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~ 214 (635)
T PRK11147 150 -------------PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRS 214 (635)
T ss_pred -------------CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHH
Confidence 244567899999999999999999999999999999999999999999998763 59999999999
Q ss_pred hhhh-cCeEEEEeCCEEEE-ecChhHHhh
Q 018040 313 SVID-SDMVLLLSYGLIEE-FDSPTRLLE 339 (362)
Q Consensus 313 ~~~~-~Dri~vl~~G~i~~-~g~~~~l~~ 339 (362)
.+.. ||+|++|++|+++. .|++.+.+.
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence 9987 99999999999985 588776554
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.8e-38 Score=349.39 Aligned_cols=211 Identities=20% Similarity=0.244 Sum_probs=174.4
Q ss_pred cEEEEEEEEEeCC-----------CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeC
Q 018040 115 EVDIHGLQVRYAP-----------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDI 181 (362)
Q Consensus 115 ~i~~~~l~~~y~~-----------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i 181 (362)
.+.++||++..+. +...+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998742 123599999999999999999999999999999999999874 689999999875
Q ss_pred CCCCHHHHhcCcEEEcCCCCCCc-ccHHhhcCcC------CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCC
Q 018040 182 SSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPL------EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENG 250 (362)
Q Consensus 182 ~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~------~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g 250 (362)
. ...+++.+|||+|++.+++ .||+||+.+. ...+. +.+.++++.+++.+.. ++.++..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCC
Confidence 3 2346678999999988776 4999999642 11222 2356788888876532 34444332
Q ss_pred -CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh-hhh-cCeEEEEeC-
Q 018040 251 -ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-VID-SDMVLLLSY- 325 (362)
Q Consensus 251 -~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~~~-~Dri~vl~~- 325 (362)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++.. +|+|||+++|+++. +.. ||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999998864 57999999999984 444 999999996
Q ss_pred CEEEEecChh
Q 018040 326 GLIEEFDSPT 335 (362)
Q Consensus 326 G~i~~~g~~~ 335 (362)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 352
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-37 Score=276.17 Aligned_cols=214 Identities=27% Similarity=0.321 Sum_probs=182.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHH-hc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDL-RS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~-r~ 191 (362)
.++++|++++-.++ +.+|++||++|++||+.+|.||||||||||.++|+|.- ++++|+|.++|+||.++++++. |.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 58999999999764 35999999999999999999999999999999999985 7899999999999999998875 45
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC----------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
-|...+|.|.=+++ ++.+.+.... .....++.+.++.+++.+.. ++..+++ .+|||||.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN~---GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVNE---GFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccCC---CcCcchHHH
Confidence 69999999998888 7777664210 11245667788888887632 2222332 579999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g~~~~l 337 (362)
..|+.+++.+|++.|||||-||||..+-+.+.+.+..+. ++.++++|||.-..+.+ .|+|.||-+|+|+..|.+ ++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 999999999999999999999999999999999998865 57999999999888887 599999999999999999 66
Q ss_pred hh
Q 018040 338 LE 339 (362)
Q Consensus 338 ~~ 339 (362)
..
T Consensus 232 ~~ 233 (251)
T COG0396 232 AE 233 (251)
T ss_pred HH
Confidence 54
No 353
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=305.69 Aligned_cols=263 Identities=23% Similarity=0.279 Sum_probs=210.9
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CCCCccccCCCCCCCCCcccEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPN------EPPLVIEASRPNCSWPSQGEVD 117 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~ 117 (362)
..|.++-+-++.+......+...+.+++..+..+.+..+.+.|+.+|.+.-+ +.+.... ............|+
T Consensus 316 f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 394 (604)
T COG4178 316 FSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGIT 394 (604)
T ss_pred hcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeE
Confidence 4567766655555555555566677788889999999999999999974221 1110000 00000001145799
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
++|++..-+++. +.+++.+|++++||.+-|.||||||||||+|+|+|++|.-+|+|.+-. -..+-|+|
T Consensus 395 ~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflp 462 (604)
T COG4178 395 LENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLP 462 (604)
T ss_pred EeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEec
Confidence 999999998765 689999999999999999999999999999999999999999987641 12579999
Q ss_pred CCCCCCcccHHhhcCcCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 198 QDPTMFEGSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 198 Q~~~l~~~tv~enl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
|.|++..+|.||-+++.. ..+++++.++|.+|+|.+..+++... ......||+|||||+++||.|+++|+++
T Consensus 463 Q~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-----~~W~~vLS~GEqQRlafARilL~kP~~v 537 (604)
T COG4178 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWV 537 (604)
T ss_pred CCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-----CcHhhhcChhHHHHHHHHHHHHcCCCEE
Confidence 999999999999998643 36799999999999999988875433 2356679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEe
Q 018040 275 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
+|||+||+||+.++..+.+.+++...+.|||.|+|+.......++.+-+.
T Consensus 538 ~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 538 FLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred EEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999889999999999998877766655544
No 354
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-38 Score=268.13 Aligned_cols=225 Identities=22% Similarity=0.371 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE-----eCCCCCHHH-
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI-----DISSIGLHD- 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~-----~i~~~~~~~- 188 (362)
-+++.++|+.|++. ...++|||++.|||..+|||+||||||||+++|++-+.|++|+|.+.-. ++-.++..+
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 58899999999875 3689999999999999999999999999999999999999999998542 232333222
Q ss_pred ---HhcCcEEEcCCCC--CC-cccHHhhcC----c-CCCC---CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC
Q 018040 189 ---LRSRLSIIPQDPT--MF-EGSVHNNLD----P-LEEY---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 254 (362)
Q Consensus 189 ---~r~~i~~v~Q~~~--l~-~~tv~enl~----~-~~~~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS 254 (362)
+|...|||-|+|. +- .-|.-.|+. - ..++ ...+..++++++.+. .+.+.+.+..+|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~----------~~RiDD~PrtFS 153 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID----------LDRIDDLPRTFS 153 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC----------cccccCcccccc
Confidence 3556999999984 11 112233442 1 1111 133445566666553 234556677899
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
|||+||+.|||-|+..|++++|||||.|||...+.++.++++.+.. +-.+++||||+..+.. +||.+||++|+++|.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999987643 6799999999999988 999999999999999
Q ss_pred cChhHHhhcCCcHHHHHHHH
Q 018040 332 DSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 332 g~~~~l~~~~~~~~~~~~~~ 351 (362)
|-.+.++..+...|.+++-.
T Consensus 234 GLTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred ccccccccCCCCchHHHHHH
Confidence 99999999998899988753
No 355
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.5e-37 Score=278.57 Aligned_cols=189 Identities=23% Similarity=0.331 Sum_probs=154.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
.++|+||||++++||.+||||+||||||||+++|+|.++|++|+|.++|.--.-+. -..|+-| +.|.+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~-----lg~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIE-----LGAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhh-----cccCCCc------ccchHH
Confidence 46899999999999999999999999999999999999999999999995321111 0122222 348999
Q ss_pred hcCcCC-------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 210 NLDPLE-------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 210 nl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
|+.+.. ...++.+.+..+-++|.++++. +..++|.||+-|+++|-|...+|+|||+||..+.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-----------PvktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-----------PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-----------chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 986421 2234455556666666655554 3455699999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhh-cCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 283 VDTATDNLIQHTLGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
-|+.-.+.=.+.+.+. .+++|+|+|||+++.++. |||+++|++|+++..|+++++...
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 9999888878888776 567999999999999998 999999999999999999999764
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.8e-38 Score=327.48 Aligned_cols=192 Identities=22% Similarity=0.276 Sum_probs=156.5
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEeCCCCCHH-
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-----------IDGIDISSIGLH- 187 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~~- 187 (362)
+++++|+++ ..+|++++ ++++||++||+||||||||||+++|+|+++|++|+|. ++|.++..+...
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 378999754 25899999 8999999999999999999999999999999999997 899887543211
Q ss_pred -HHhcCcEEEc----CCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 188 -DLRSRLSIIP----QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 188 -~~r~~i~~v~----Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
..+.++++.+ |.|.+|.+|+++|+.... ..+++.++++.+++.+.. ++...+||||||||++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~ 222 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENIL-----------DRDISELSGGELQRVA 222 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 1112345444 455667779999986421 234567778877765432 3344568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
|||||+++|++|||||||++||+.++..+.+.|+++.+++|||+|||+++.+.. ||+|++|+++
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999886558999999999999988 9999999873
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.6e-38 Score=348.10 Aligned_cols=200 Identities=24% Similarity=0.248 Sum_probs=166.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV----EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG 205 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~----~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 205 (362)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|.+|+|.+||+++.+.. ..+|+.++|++|+..+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 578999999999875432 2356679999999888864
Q ss_pred -cHHhhcCcCC----------CCCHHH-----HHHHHHHcCCChHHHhccccchhhhc-cCCCCCChhHHHHHHHHHHhc
Q 018040 206 -SVHNNLDPLE----------EYADEE-----IWEALDKCQLGNEVRKNEGKLESRVT-ENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 206 -tv~enl~~~~----------~~~~~~-----~~~~l~~~~l~~~~~~~~~~l~~~~~-~~g~~LSgGqrQRv~iAral~ 268 (362)
||+||+.+.. ....++ .+.+++.+++.+. .++.+| +....|||||||||+|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-------~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHT-------RNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccc-------cCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 9999996521 122221 2345677776543 345554 346789999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecCh-hhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRI-TSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l-~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
.+|++++|||||+|||+.+...+.+.|++.. .++|+|+++|++ +.+.. +|+|++|++|+++..|+++++
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 9999999999999999999999999999864 378999999997 56665 999999999999999999887
No 358
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-37 Score=281.75 Aligned_cols=198 Identities=25% Similarity=0.339 Sum_probs=155.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc-CCCCCC-cccHH
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP-QDPTMF-EGSVH 208 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~-~~tv~ 208 (362)
++++||||+|++|++++++|+|||||||++|+|.|++.|++|.|.++|.+... ..+++-+++++|+ |...+. ...+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 58999999999999999999999999999999999999999999999987654 2334445566665 322222 11122
Q ss_pred hhcCc---CCCCCHHHHHH----HHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 209 NNLDP---LEEYADEEIWE----ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 209 enl~~---~~~~~~~~~~~----~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
+-+.. ..+..+.+..+ ..+..+ ++..+..+...||-|||.|+.||.||+++|++|+|||||-
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLd-----------l~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILD-----------LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhc-----------chhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 22211 11233333333 223333 4445556667789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 282 SVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||..++..+.+.+++.. .++||++.||+++.+.. ||||+.|+.|+++..|+.+++.+.
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 999999999999998754 57999999999999988 999999999999999999988654
No 359
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.8e-37 Score=255.80 Aligned_cols=194 Identities=22% Similarity=0.303 Sum_probs=162.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHHhc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~ 191 (362)
.+.++||+.+.++. ..|.++||+|.+||++.|.||||||||||+.-+.|.+.++ +|++.+|++++..++.. ++
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 47789999888765 6899999999999999999999999999999999999874 79999999999877643 57
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
++|++|||+++|+. +|.+|+.+.- +..+.....++++.++.....+.|. +||||||-||++-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----------tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA-----------TLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh-----------hcCcchHHHHHHH
Confidence 89999999999975 9999997632 1223445667888887776665554 4699999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh--cCCceEEEEecChhhhhhcCeEEEE
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
|+|+..|+.++||||+|.||..-+..+.+..-.. ..+..+|+||||...+..-.||+-|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999888888877543 2478899999999988855566544
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.2e-37 Score=343.43 Aligned_cols=199 Identities=24% Similarity=0.262 Sum_probs=163.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-c
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-G 205 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ 205 (362)
..+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+++ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999886543 2678999999988776 5
Q ss_pred cHHhhcCcCCC-------------CCHH----------H------------------HHHHHHHcCCChHHHhccccchh
Q 018040 206 SVHNNLDPLEE-------------YADE----------E------------------IWEALDKCQLGNEVRKNEGKLES 244 (362)
Q Consensus 206 tv~enl~~~~~-------------~~~~----------~------------------~~~~l~~~~l~~~~~~~~~~l~~ 244 (362)
||+||+.+... ...+ + ...+++.+|+.+ ..+|
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~-------~~~t 327 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDI-------CKDT 327 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcc-------ccCc
Confidence 99999965210 0010 0 122344444432 2345
Q ss_pred hhc-cCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecCh-hhhhh-cCe
Q 018040 245 RVT-ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRI-TSVID-SDM 319 (362)
Q Consensus 245 ~~~-~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l-~~~~~-~Dr 319 (362)
.++ +....|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++.. .++|+|+++|++ +.+.. +|+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 553 3457899999999999999999999999999999999999999999999864 478999999997 35555 999
Q ss_pred EEEEeCCEEEEecChhHHh
Q 018040 320 VLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 320 i~vl~~G~i~~~g~~~~l~ 338 (362)
|++|++|+++..|+++++.
T Consensus 408 vilL~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 408 IILLSEGQIVYQGPRDHIL 426 (1470)
T ss_pred EEEeeCceEEEeCCHHHHH
Confidence 9999999999999998875
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=304.56 Aligned_cols=209 Identities=24% Similarity=0.303 Sum_probs=161.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. ++++++||++.+|+++||||+|||||||||++|+|...|++|+|...+. -+++
T Consensus 3 ~i~~~~ls~~~g~~--~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCCc--eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 58999999999654 6999999999999999999999999999999999999999999998652 2599
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCCCC---H------------------HHHHHHHHHcCC---ChHHHhccccc--hhhhc
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEEYA---D------------------EEIWEALDKCQL---GNEVRKNEGKL--ESRVT 247 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~~~---~------------------~~~~~~l~~~~l---~~~~~~~~~~l--~~~~~ 247 (362)
|++|++.+.+. |+.+.+......- . .++.......+- ...+.....++ ... .
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~ 148 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence 99999998865 8888764321100 0 001111111111 11111111222 111 4
Q ss_pred cCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 248 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
....+||||||.||+|||||+.+|++|||||||++||..+...+.+.|... ++ |+|+||||-.++.. |++|+-++.|
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~g 226 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDRG 226 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecCC
Confidence 456789999999999999999999999999999999999999999999865 45 99999999999999 9999999999
Q ss_pred EEEE-ecChhHHhh
Q 018040 327 LIEE-FDSPTRLLE 339 (362)
Q Consensus 327 ~i~~-~g~~~~l~~ 339 (362)
++.. .|..+...+
T Consensus 227 ~l~~y~Gny~~~~~ 240 (530)
T COG0488 227 KLTPYKGNYSSYLE 240 (530)
T ss_pred ceeEecCCHHHHHH
Confidence 8765 466655443
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3e-36 Score=316.47 Aligned_cols=221 Identities=16% Similarity=0.154 Sum_probs=159.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEECCEeCCCC--CH--
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV---EPTAGLIAIDGIDISSI--GL-- 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~---~p~~G~I~i~g~~i~~~--~~-- 186 (362)
..|+++|++++|++. ++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++.+... +.
T Consensus 176 ~~I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 359999999999754 5999999999999999999999999999999999864 57899998655543211 11
Q ss_pred ----------HHHhcCcEEEcCCCCCCcccHHhhcCcC--CCCC----HHHHHHHHHHcCCCh------HHHhcc--ccc
Q 018040 187 ----------HDLRSRLSIIPQDPTMFEGSVHNNLDPL--EEYA----DEEIWEALDKCQLGN------EVRKNE--GKL 242 (362)
Q Consensus 187 ----------~~~r~~i~~v~Q~~~l~~~tv~enl~~~--~~~~----~~~~~~~l~~~~l~~------~~~~~~--~~l 242 (362)
..+++.+++++|++.+...+..+|.... .... .+++.++++.+++.+ .+.... -++
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 0123457888987754332333332110 0011 123333333333211 111111 112
Q ss_pred h-hhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE
Q 018040 243 E-SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 320 (362)
Q Consensus 243 ~-~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri 320 (362)
+ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||+|
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEE
Confidence 1 2234456779999999999999999999999999999999999999999999876 6799999999999988 9999
Q ss_pred EEEeCCEEE-EecChhHHh
Q 018040 321 LLLSYGLIE-EFDSPTRLL 338 (362)
Q Consensus 321 ~vl~~G~i~-~~g~~~~l~ 338 (362)
++|++|++. ..|++++..
T Consensus 412 ~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 412 LHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred EEEECCEEEEeCCCHHHHH
Confidence 999999996 567766543
No 363
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-35 Score=277.27 Aligned_cols=258 Identities=24% Similarity=0.310 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeE
Q 018040 59 FGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTC 138 (362)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl 138 (362)
..+.+..++.+++..+..+-.+.++.+|+.++...++..... . +...|.-..++++||.|.|.+.. .-+..||+
T Consensus 271 vlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~--~---~q~~p~~~~lelrnvrfay~~~~-FhvgPiNl 344 (546)
T COG4615 271 VLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFP--R---PQAFPDWKTLELRNVRFAYQDNA-FHVGPINL 344 (546)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCC--C---CCcCCcccceeeeeeeeccCccc-ceecceee
Confidence 344556667777778888899999999999986533221111 1 11112234699999999998753 45889999
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA 218 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 218 (362)
+|++||++-|+|.|||||||++++|.|+++|++|+|++||++++.-+++++|+-++-||-|.++|+.++- +-...+
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as 420 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKAS 420 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999986542 112256
Q ss_pred HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-
Q 018040 219 DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ- 297 (362)
Q Consensus 219 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~- 297 (362)
.+.+...+++..+.+...-..+.+ ....||-|||+|+|+--|++-+.||+++||=-+.-||.-++.+.+.+..
T Consensus 421 ~q~i~~~LqrLel~~ktsl~d~~f------s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~ 494 (546)
T COG4615 421 PQLIEKWLQRLELAHKTSLNDGRF------SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPL 494 (546)
T ss_pred hHHHHHHHHHHHHhhhhcccCCcc------cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHH
Confidence 677777887776655433222222 1246899999999999999999999999999999999999999887754
Q ss_pred h-cCCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 298 H-FSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 298 ~-~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
+ ..||||+.||||-.....|||++.|++|+++|.-
T Consensus 495 LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 495 LKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 2 3589999999999999999999999999998854
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-35 Score=305.89 Aligned_cols=215 Identities=26% Similarity=0.325 Sum_probs=181.4
Q ss_pred ccEEEEEEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CccEEEECCEeCCCCCHH
Q 018040 114 GEVDIHGLQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP---TAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p---~~G~I~i~g~~i~~~~~~ 187 (362)
..+.++|+++.-.++ .+.+|++||.+++|||+.||+||||||||||+++|+|-.+. .+|+|++||+.. +.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chh
Confidence 358899999888665 36799999999999999999999999999999999999975 789999999543 456
Q ss_pred HHhcCcEEEcCCCCCCcc-cHHhhcCcC------CCC----CHHHHHHHHHHcCCChHHHhccccchhhhcc-CCCCCCh
Q 018040 188 DLRSRLSIIPQDPTMFEG-SVHNNLDPL------EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTE-NGENWSM 255 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~l~~~-tv~enl~~~------~~~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~g~~LSg 255 (362)
.+++..|||.||..+++. ||+|++.+. ... .+++++++++..++.+-. |+.+|. ....+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~-------~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCA-------DTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhc-------cceecCCCCCcccc
Confidence 788899999999998875 999998542 211 245677888888886433 344432 2357999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh-hhh-cCeEEEEeCCEEEEec
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-VID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~~~-~Dri~vl~~G~i~~~g 332 (362)
|||+||+||.-|++||+||+|||||||||..+...+.+.|++.. +|+|||++=|+++. +-. .|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999865 58999999999964 444 9999999999999999
Q ss_pred ChhHHh
Q 018040 333 SPTRLL 338 (362)
Q Consensus 333 ~~~~l~ 338 (362)
+++++.
T Consensus 254 ~~~~~~ 259 (613)
T KOG0061|consen 254 SPRELL 259 (613)
T ss_pred CHHHHH
Confidence 998764
No 365
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=7e-36 Score=252.35 Aligned_cols=136 Identities=41% Similarity=0.662 Sum_probs=122.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHhhc
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNL 211 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~enl 211 (362)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+....++.++|++|++.+++. |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999887777889999999999988876 79999
Q ss_pred CcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 212 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
..+++++++++.+++.+ ..+..++.++..||+|||||++|||||+++|+++|||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34567788888887654 24556666778899999999999999999999999999997
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=9.2e-34 Score=286.71 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=169.7
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
...++++|+++.|++. +++++++||.|.+|+++||+||||+|||||+|+|+|...|.+|+|.+.- . -+
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~----------v~ 386 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-T----------VK 386 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-c----------eE
Confidence 3469999999999765 4699999999999999999999999999999999999999999998743 1 25
Q ss_pred cEEEcCCC-CCCc-ccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 193 LSIIPQDP-TMFE-GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 193 i~~v~Q~~-~l~~-~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+||.+|+. .+++ .|+.+++.... ......+...|.++++...-. ......||||||-|+.+|+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhcc
Confidence 99999987 3343 38988886433 233678888999998764322 23345689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEEe-cChhHHhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEF-DSPTRLLE 339 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~-g~~~~l~~ 339 (362)
+|.+|||||||++||.++...+.+.|... .-|||+||||-.++.. |++|+.+++ ++... |.+++..+
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 99999999999999999999999999876 3599999999999999 999999998 77665 66665543
No 367
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-35 Score=254.09 Aligned_cols=187 Identities=23% Similarity=0.338 Sum_probs=157.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++.+|++...+.. .++.++||++.+||.+-|.|||||||||||++|+|+.+|++|+|+++|.++.... +..++.+-|
T Consensus 3 L~a~~L~~~R~e~--~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERGER--TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred chhhhhhhccCcc--eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 4567777766543 6899999999999999999999999999999999999999999999999886543 345677888
Q ss_pred EcCCCCCCc-ccHHhhcCcCCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 196 IPQDPTMFE-GSVHNNLDPLEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 196 v~Q~~~l~~-~tv~enl~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
+-..+.+-. .|+.||+.|+.. .....+++++..++|....+. ...+||.|||+||||||-.+..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dl-----------p~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL-----------PVGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccccc-----------chhhcchhHHHHHHHHHHHcCC
Confidence 888887765 499999987543 456789999999998754332 2345899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 316 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 316 (362)
++++||||||++||.+....+-..+.... +|-.||..||....+..
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999999999999998764 67899999998766543
No 368
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=5.6e-35 Score=313.98 Aligned_cols=215 Identities=21% Similarity=0.325 Sum_probs=187.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhcC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~ 192 (362)
..+.++++++.|+.... +++++|+.|++||+.|+.|+|||||||++++|.|..+|++|+++++|.++.... ..+.++.
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46899999999987654 899999999999999999999999999999999999999999999999986543 3457899
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
+||+||+..+++. |.||.+.+.. ... .+.++..++.+++.+..+.. ...+|||+|+|+++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-----------~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-----------VRTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-----------hhhCCCcchhhHHHH
Confidence 9999999988865 9999986532 111 34467778888877655443 345799999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
.|++-+|++++|||||+|+||.+++.+++.+.+..+ ++.+|++||.+++++. |||+.+|.+|++...|+++++.++
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999998765 4599999999999998 999999999999999999999754
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.1e-33 Score=259.78 Aligned_cols=188 Identities=20% Similarity=0.192 Sum_probs=127.0
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHH-HHHHcCCCCCccEEEEC-C------EeC---CCCCHHHHhc-CcEEEc
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLI-QTLFRIVEPTAGLIAID-G------IDI---SSIGLHDLRS-RLSIIP 197 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl-~~l~gl~~p~~G~I~i~-g------~~i---~~~~~~~~r~-~i~~v~ 197 (362)
..+|+++||+|++||+++|+|+||||||||+ ..+. .+|++.+. + ..+ ........+. ..++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 3589999999999999999999999999996 4332 13433221 0 000 0000111121 244555
Q ss_pred CCCCCC--cc-cHH---hhcCcC----CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 198 QDPTMF--EG-SVH---NNLDPL----EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 198 Q~~~l~--~~-tv~---enl~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
|++... +. ++. +...+. ......+..+.++.+++.+ ...+..+.+||||||||++|||||
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGY----------LTLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCc----------ccccCccCcCCHHHHHHHHHHHHH
Confidence 544321 11 221 111110 1111111233444444421 124566778999999999999999
Q ss_pred cCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCCEEEEec
Q 018040 268 LKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFD 332 (362)
Q Consensus 268 ~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G~i~~~g 332 (362)
+.+| +++||||||++||+.+...+.+.+++.. ++.|+|+|||+++.+..||||++| ++|+|+++|
T Consensus 153 ~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9998 5999999999999999999999998754 578999999999988779999999 999999876
No 370
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=7.2e-32 Score=266.13 Aligned_cols=301 Identities=20% Similarity=0.230 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 15 AAAMQWLCFHIDMLSSIIFVFSLFFI-----ISVPEGVVDPAIAGLAVTF----GLNLNMLQASLISKLCNLENRIISVE 85 (362)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~ 85 (362)
.....|+.+..+.+-.+..++..+++ .....+.++|+.....+.. ...+...+..+......+.....-..
T Consensus 306 ~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~ 385 (659)
T KOG0060|consen 306 MSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTH 385 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHH
Confidence 34456777766666533222111110 0113345667665544432 22333344445555556666667788
Q ss_pred HHHHHhcCCCCC-----------------CCcc-ccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEE
Q 018040 86 RILQYMCIPNEP-----------------PLVI-EASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTG 147 (362)
Q Consensus 86 Rl~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ 147 (362)
|+.++++.-.+. .+.. ........+|.+..|++++|++.-|.+...+++|+||+|+.|+-+.
T Consensus 386 Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LL 465 (659)
T KOG0060|consen 386 RIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLL 465 (659)
T ss_pred HHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEE
Confidence 888887421110 0000 0011123456677899999999998765567788999999999999
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcC--------CCCCH
Q 018040 148 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL--------EEYAD 219 (362)
Q Consensus 148 ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~--------~~~~~ 219 (362)
|.||||||||+|++++.|+++..+|++.--...- -+.+-|+||.|++-.||+|+.+-+. ...++
T Consensus 466 ItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d 537 (659)
T KOG0060|consen 466 ITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASD 537 (659)
T ss_pred EECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CCceEEecCCCCccccchhheeeccCccccccccCCCH
Confidence 9999999999999999999999999997543211 0358999999999899999988543 23568
Q ss_pred HHHHHHHHHcCCChHHHhccccchh-hhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 018040 220 EEIWEALDKCQLGNEVRKNEGKLES-RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298 (362)
Q Consensus 220 ~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~ 298 (362)
+++.+.|+.+++.+.+++. +|+|+ ...++...||+||+||+|.||.++++|++-||||.||++|.+.+..+.+.+++.
T Consensus 538 ~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 538 EDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred HHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 8999999999998877664 56664 456788899999999999999999999999999999999999999999999765
Q ss_pred cCCceEEEEecChhhhhhcCeEEEEeCC
Q 018040 299 FSDCTVITIAHRITSVIDSDMVLLLSYG 326 (362)
Q Consensus 299 ~~~~tvi~itH~l~~~~~~Dri~vl~~G 326 (362)
|.|.|.|+||-+..+.-|.++-|+.+
T Consensus 617 --giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 617 --GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred --CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 78999999999999999999999864
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=2.5e-33 Score=252.00 Aligned_cols=164 Identities=21% Similarity=0.255 Sum_probs=131.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---------cEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA---------GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---------G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 204 (362)
+++++++++| +++|+||||||||||+++|.|+.+|.. |++.++|.++... ..+++++++||++..+.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCce
Confidence 6789999999 999999999999999999999987653 4677777765432 23567999999997761
Q ss_pred ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc----CCCCEEEEeCCC
Q 018040 205 GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL----KKSKVLVLDEAT 280 (362)
Q Consensus 205 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~----~~p~illLDEPt 280 (362)
. ....+++.++++. .+ .....+.+||||||||++|||+++ .+|++++|||||
T Consensus 90 ~----------~~~~~~~~~~l~~---~~-----------~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 90 S----------IISQGDVSEIIEA---PG-----------KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred e----------EEehhhHHHHHhC---CC-----------ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 1 0013345555544 11 123345679999999999999986 567999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++||+.....+.+.+++..++.|||++||+++.+..||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999987667899999999998877999999874
No 372
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-33 Score=238.16 Aligned_cols=201 Identities=23% Similarity=0.303 Sum_probs=154.8
Q ss_pred cEEEEEEEEEeCCC-----CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC--CE--eCCCCC
Q 018040 115 EVDIHGLQVRYAPH-----LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID--GI--DISSIG 185 (362)
Q Consensus 115 ~i~~~~l~~~y~~~-----~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~--g~--~i~~~~ 185 (362)
.+.++|++++|.-+ .-++++++||+++.||++++-||||||||||+++|-+-|.|++|+|.+. |. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 47888888887321 2368999999999999999999999999999999999999999999983 32 333333
Q ss_pred HHH---H-hcCcEEEcCCCCCCcc-cH----HhhcCc-C--CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCC
Q 018040 186 LHD---L-RSRLSIIPQDPTMFEG-SV----HNNLDP-L--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 253 (362)
Q Consensus 186 ~~~---~-r~~i~~v~Q~~~l~~~-tv----~enl~~-~--~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L 253 (362)
+++ . |+.||||+|--...+- +. .|-+.- . .+....+....+.+.++.+.+-.+ .+..+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----------aPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----------APATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----------CCccc
Confidence 332 3 4569999996544432 22 222211 1 111234455667777776655443 35668
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeC
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
||||+|||.|||.++.+-+||+|||||++||..+++.+.++|.+.+ +|..+|=|-||-+.-+. |||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999998865 68999999999887777 999988753
No 373
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=4e-32 Score=253.31 Aligned_cols=193 Identities=23% Similarity=0.313 Sum_probs=139.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-----c-CC----CCCcc-----------EEEECCEeCCCCCHH---
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-----R-IV----EPTAG-----------LIAIDGIDISSIGLH--- 187 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-----g-l~----~p~~G-----------~I~i~g~~i~~~~~~--- 187 (362)
.|+|+|++|+.|+.++|.|+||||||||++.++ + +. .|..+ -|.+|..+|..-+..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998663 1 11 12211 356666666432211
Q ss_pred -------HHhc----------------CcEEEcCCCCC-CcccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccc
Q 018040 188 -------DLRS----------------RLSIIPQDPTM-FEGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKL 242 (362)
Q Consensus 188 -------~~r~----------------~i~~v~Q~~~l-~~~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l 242 (362)
.+|+ .+.|..++... ...|+.|++.++.... ..+..++++.+++...
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l-------- 161 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYI-------- 161 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchh--------
Confidence 0111 12233333322 2346667665543221 2334455555555321
Q ss_pred hhhhccCCCCCChhHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcC
Q 018040 243 ESRVTENGENWSMGQRQLVCLARVLLKK---SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSD 318 (362)
Q Consensus 243 ~~~~~~~g~~LSgGqrQRv~iAral~~~---p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~D 318 (362)
.+++...+|||||+||++|||+|+++ |+++||||||++||+.....+.+.+++.. ++.|+|+|||+++.+..||
T Consensus 162 --~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD 239 (261)
T cd03271 162 --KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCAD 239 (261)
T ss_pred --hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 34666778999999999999999996 79999999999999999999999998765 4789999999999998899
Q ss_pred eEEEE------eCCEEEEecCh
Q 018040 319 MVLLL------SYGLIEEFDSP 334 (362)
Q Consensus 319 ri~vl------~~G~i~~~g~~ 334 (362)
++++| ++|+|++.|+|
T Consensus 240 ~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 240 WIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEEEecCCcCCCCCEEEEeCCC
Confidence 99999 89999999975
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=1.1e-31 Score=248.67 Aligned_cols=191 Identities=19% Similarity=0.257 Sum_probs=131.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC----------------CCCCcc-------
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI----------------VEPTAG------- 172 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl----------------~~p~~G------- 172 (362)
|+++|. ++|++. .++.+++ |++++|+||||||||||+++|.++ +.+.+|
T Consensus 4 i~~~nf-ksy~~~--~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 4 VIIQGF-KSYKDQ--TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEeCc-cCcccC--cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 556654 346543 3777776 899999999999999999999844 444444
Q ss_pred -EEEECCEeCCC-C--CHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHH--hcc-------
Q 018040 173 -LIAIDGIDISS-I--GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVR--KNE------- 239 (362)
Q Consensus 173 -~I~i~g~~i~~-~--~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~--~~~------- 239 (362)
+|.+++.+-.. . ....+++.++++||++.++.. ..+.+++...+..+++...-. ..+
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l 145 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL 145 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh
Confidence 44444422100 0 111234556666666554431 223455666666666543100 000
Q ss_pred ccchhhhccCCCCCChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh
Q 018040 240 GKLESRVTENGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315 (362)
Q Consensus 240 ~~l~~~~~~~g~~LSgGqrQRv~iAral~----~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 315 (362)
..+....++.+.+||||||||++||||++ .+|+++||||||++||+.+.+.+.+.+++..+++|+|++||+.+...
T Consensus 146 ~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~ 225 (243)
T cd03272 146 TNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLE 225 (243)
T ss_pred hhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence 11223345678899999999999999996 36899999999999999999999999988766788898899877665
Q ss_pred hcCeEEEEe
Q 018040 316 DSDMVLLLS 324 (362)
Q Consensus 316 ~~Dri~vl~ 324 (362)
.||++++|+
T Consensus 226 ~~d~i~~l~ 234 (243)
T cd03272 226 VADKFYGVK 234 (243)
T ss_pred hCCEEEEEE
Confidence 699999986
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.97 E-value=2.5e-31 Score=241.81 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=137.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEe-CCcEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFL-GGMKTGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~-~Ge~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.|+++|+. +|.+. .+++|+.. +|++++|+||||||||||+++|.+ ++.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58888887 66543 46677654 589999999999999999999995 555555555433 11111222234556
Q ss_pred cEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC---
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK--- 269 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~--- 269 (362)
|++++|++.... + +.... ..+.+...+... + ...++++.+...+.+||+||+||++||||++.
T Consensus 78 v~~~f~~~~~~~-~---~~r~~-gl~~~~~~~~~~---l------~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~ 143 (213)
T cd03279 78 VSFTFQLGGKKY-R---VERSR-GLDYDQFTRIVL---L------PQGEFDRFLARPVSTLSGGETFLASLSLALALSEV 143 (213)
T ss_pred EEEEEEECCeEE-E---EEEec-CCCHHHHHHhhh---h------hhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHH
Confidence 999999873211 1 11111 223333322210 0 01124566677788899999999999999985
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 270 -------KSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 270 -------~p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
+|+++||||||++||+.+...+.+.+.+..+ +.|+|+|||+++.+.. ||++++|++|-+
T Consensus 144 ~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 144 LQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 5789999999999999999999999988754 7899999999999887 899999999853
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=6.8e-32 Score=231.11 Aligned_cols=207 Identities=21% Similarity=0.284 Sum_probs=169.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++||+..- -|-.+|.++..||++-+|||||||||||+..++|+.+ .+|+|.++|.++..++..++.++-+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHH
Confidence 5667776533 3667899999999999999999999999999999975 68999999999999999999899999
Q ss_pred EcCCCC-CCcccHHhhcCcCCCC--CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC---
Q 018040 196 IPQDPT-MFEGSVHNNLDPLEEY--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK--- 269 (362)
Q Consensus 196 v~Q~~~-l~~~tv~enl~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~--- 269 (362)
+.|+.. .|...|..++....+. ....+.++....++ +..+++...+|||||+|||-+|-..++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-----------~DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-----------cchhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 998753 5666788888654432 12334445555544 444555667799999999999999886
Q ss_pred --C--CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh-hhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 270 --K--SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-VIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 270 --~--p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
| .++||+|||.++||...+..+...+.+.. .|.+|||.+||++. +..||+++.++.|++...|..+|++..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 2 47999999999999999988888887764 68999999999975 555999999999999999999999864
No 377
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.5e-30 Score=255.50 Aligned_cols=206 Identities=21% Similarity=0.313 Sum_probs=165.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i 193 (362)
.++++|++..- .++|+||++++||++||.|--|||+|-|+++|+|..++.+|+|.+||+++.-.++. ..+..|
T Consensus 263 ~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 46777776421 47999999999999999999999999999999999999999999999998776655 567789
Q ss_pred EEEcCCC---CCC-cccHHhhcCcC--CC------CCHHH----HHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 194 SIIPQDP---TMF-EGSVHNNLDPL--EE------YADEE----IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 194 ~~v~Q~~---~l~-~~tv~enl~~~--~~------~~~~~----~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
+|||.|- .++ ..+|++|+... .. .+..+ ..+..+.+++. . ........+||||-
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik------~----~s~~~~v~~LSGGN 406 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK------T----PSPEQPIGTLSGGN 406 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcc------c----CCccchhhcCCchh
Confidence 9999975 355 45999999642 11 11111 12222222221 1 11224456799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
+|||.|||.|+.+|++|||||||.|+|..++..|.+.++++. +|++||+||-++.++.. ||||+||++|+++..-+.+
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999999875 68999999999999887 9999999999999865554
Q ss_pred H
Q 018040 336 R 336 (362)
Q Consensus 336 ~ 336 (362)
+
T Consensus 487 ~ 487 (500)
T COG1129 487 E 487 (500)
T ss_pred c
Confidence 4
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=8.6e-30 Score=237.40 Aligned_cols=181 Identities=19% Similarity=0.260 Sum_probs=136.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCE-eCCCCC-H-HHHhcCcEEEcCCCC---------CC-cccHH
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGI-DISSIG-L-HDLRSRLSIIPQDPT---------MF-EGSVH 208 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~-~i~~~~-~-~~~r~~i~~v~Q~~~---------l~-~~tv~ 208 (362)
..+++||||||||||||+++|++++.+. .|+++..|. ++-... . ...+.++++++|++. +. ..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999886 468888776 432111 1 112347999999862 22 23777
Q ss_pred hhcCcC---------CCCCHHHHHHHHHHcCCCh----------HHHhccccchhhhccCCCCCChhHHHHHHHHHHhc-
Q 018040 209 NNLDPL---------EEYADEEIWEALDKCQLGN----------EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL- 268 (362)
Q Consensus 209 enl~~~---------~~~~~~~~~~~l~~~~l~~----------~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~- 268 (362)
+|+... .....+++.++++.+++.. .+..... ........+.+||+|||||++|||||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN-MGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH-hHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 776421 1123567788899888751 1111111 123455677889999999999999997
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEe
Q 018040 269 ---KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 269 ---~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
.+|+++||||||++||+.+.+.+.+.+++..++.|+|+|||+.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998777889999999977777799998775
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.96 E-value=1e-29 Score=229.83 Aligned_cols=164 Identities=22% Similarity=0.245 Sum_probs=126.1
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHH----cCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC-----CCCc-c
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLF----RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP-----TMFE-G 205 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-----~l~~-~ 205 (362)
.++++.+| +++|+||||||||||+++|. |..+|.+|.+..+...+.. ...+..+++++|++ .+.. .
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34567777 99999999999999999994 9989888877622222221 12356799999998 2222 2
Q ss_pred cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH------HHHHHHhcCCCCEEEEeCC
Q 018040 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL------VCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 206 tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR------v~iAral~~~p~illLDEP 279 (362)
|+.+|+.+.. .+++.+. +.+.+.+||+||+|| ++||||++.+|++++||||
T Consensus 92 ~~~~~~~~~~---~~~~~~~--------------------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 92 AILENVIFCH---QGESNWP--------------------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hHhhceeeec---hHHHHHH--------------------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 7778875431 2222222 144556789999996 7899999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCC
Q 018040 280 TASVDTATDN-LIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYG 326 (362)
Q Consensus 280 ts~LD~~~~~-~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G 326 (362)
|++||+.+.. .+.+.+.+..+ +.|+|++||+++.+..||++++|++.
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 9999999999 99999988654 68999999999988779999999753
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=5.5e-30 Score=232.81 Aligned_cols=184 Identities=21% Similarity=0.266 Sum_probs=131.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh-cCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR-SRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r-~~i 193 (362)
.|+++|.- +|++. .+++++++ ++++|+|||||||||++++|. +++|.+. ...| +++
T Consensus 5 ~l~l~nfk-~~~~~--~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAGE--QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCCC--eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhhH
Confidence 47777775 77643 48898887 899999999999999999997 3345332 1223 569
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCCh----------HHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGN----------EVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
++++|+..+++. |+++++.++...... ..++..+... .+.. ..++..........||+|||||++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~v~~~~~~~-~~~L~~~~~~~~~~lS~G~~~r~~ 137 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDK---PLLKSKGIDLDHNRFLILQGEVEQ-IAQMPKKSWKNISNLSGGEKTLSS 137 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCH---HHHHHCCcCCCCCceEEcCCcEEE-eeccccccccchhhcCHHHHHHHH
Confidence 999999877654 777776544322110 0111111100 0000 011222234445679999999999
Q ss_pred HHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 263 LARVLLK----KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 263 iAral~~----~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
||||++. +|++++|||||++||+.+...+.+.+++..++.|+|++||+.+....||||++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999963 58999999999999999999999999988777899999999766666999999974
No 381
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=7.6e-29 Score=218.11 Aligned_cols=229 Identities=22% Similarity=0.329 Sum_probs=183.8
Q ss_pred EEEEEEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCEeCCCCCHHHH
Q 018040 116 VDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP----TAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 116 i~~~~l~~~y~--~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~~ 189 (362)
+.++|++..+. .+...+++++|+++..||+-|+||+||||||-+.|+|.|..+- +..+..+++.++-.+++++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 55667666553 2333489999999999999999999999999999999999763 45667788888888888876
Q ss_pred hc----CcEEEcCCCCCC--c-ccH----HhhcCcC-------CC--CCHHHHHHHHHHcCCChHHHhccccchhhhccC
Q 018040 190 RS----RLSIIPQDPTMF--E-GSV----HNNLDPL-------EE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 249 (362)
Q Consensus 190 r~----~i~~v~Q~~~l~--~-~tv----~enl~~~-------~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~ 249 (362)
|+ .|+++||+|.-- + .++ -+||-.. .. ..+.+..+.+.++|+.+..+ .+...
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--------IM~SY 155 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------IMRSY 155 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH--------HHHhC
Confidence 64 588999999532 2 133 3455221 11 12455667888899876433 23344
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 250 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 250 g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
+.+|--||-|+|.||.|++.+|++||.||||+++|+.++.+++.++.... ++.||++++||+..+.. ||+|-||.-|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 56689999999999999999999999999999999999999999998764 46899999999999987 9999999999
Q ss_pred EEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 327 LIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 327 ~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
+-+|.++.+++++.+...|.+.+...
T Consensus 236 Q~~ESa~~e~l~~~PhHPYTqALi~a 261 (330)
T COG4170 236 QTVESAPSEELVTMPHHPYTQALIRA 261 (330)
T ss_pred ccccccchhHHhcCCCCchHHHHHHh
Confidence 99999999999999888888766543
No 382
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=248.58 Aligned_cols=193 Identities=21% Similarity=0.328 Sum_probs=159.7
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.+.++|++|+|+++. .++++++|-|..++++++|||||+|||||||++.|.+.|..|.|.-.-. .++
T Consensus 388 pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred CeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 3599999999998764 6899999999999999999999999999999999999999999864322 234
Q ss_pred EEEcCCCC---CCcccHHhhcCc-CC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 194 SIIPQDPT---MFEGSVHNNLDP-LE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 194 ~~v~Q~~~---l~~~tv~enl~~-~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
++.-|+.. -++.+..+++.. +. ....+++...+.++|+....+..| ..+||+|||.||++||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHh
Confidence 55555432 234566777643 22 245677888999999975544333 2468999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
++|.||+|||||++||.++...+.+.|.++ ..+||+||||...+.. +++|++.++|.+..
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 999999999999999999999999999876 3489999999999998 99999999998765
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=3.1e-28 Score=260.24 Aligned_cols=106 Identities=23% Similarity=0.293 Sum_probs=94.0
Q ss_pred hhccCCCCCChhHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeE
Q 018040 245 RVTENGENWSMGQRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMV 320 (362)
Q Consensus 245 ~~~~~g~~LSgGqrQRv~iAral~~~p---~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri 320 (362)
.+++...+||||||||+.|||+|+++| +++||||||++||+.....+.+.|+++. ++.|||+|||+++.+..||+|
T Consensus 823 ~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 823 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 367788899999999999999999999 9999999999999999999999998864 579999999999999889999
Q ss_pred EEE------eCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 321 LLL------SYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 321 ~vl------~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
++| ++|+|++.|+++++...+.+.-.+++.
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~ 938 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLK 938 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHH
Confidence 999 799999999999998776543334443
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=2.2e-27 Score=263.62 Aligned_cols=100 Identities=30% Similarity=0.272 Sum_probs=89.1
Q ss_pred cchhh-hccCCCCCChhHHHHHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhh
Q 018040 241 KLESR-VTENGENWSMGQRQLVCLARVLL---KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI 315 (362)
Q Consensus 241 ~l~~~-~~~~g~~LSgGqrQRv~iAral~---~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~ 315 (362)
++... +++...+|||||+||++|||||+ ++|+++||||||++||+.+.+.+.+.|+++. ++.|||+|||+++.+.
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~ 876 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVK 876 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 34443 56777889999999999999998 6999999999999999999999999998864 5789999999999996
Q ss_pred hcCeEEEEe------CCEEEEecChhHHhhc
Q 018040 316 DSDMVLLLS------YGLIEEFDSPTRLLEN 340 (362)
Q Consensus 316 ~~Dri~vl~------~G~i~~~g~~~~l~~~ 340 (362)
.||+|++|. +|++++.|+++++...
T Consensus 877 ~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~ 907 (1809)
T PRK00635 877 VADYVLELGPEGGNLGGYLLASCSPEELIHL 907 (1809)
T ss_pred hCCEEEEEccCCCCCCCEEEEeCCHHHHHhc
Confidence 699999996 7899999999999764
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=8.6e-28 Score=223.46 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=135.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe-C-CC-----CCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID-I-SS-----IGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-i-~~-----~~~~ 187 (362)
.++++|. ..|.+. .++...++ +++|+||||||||||+.+|.+++.+..|++..++.+ + .. .+..
T Consensus 3 ~i~l~nf-~~~~~~-------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~ 73 (247)
T cd03275 3 RLELENF-KSYKGR-------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSN 73 (247)
T ss_pred EEEEECc-cccCCC-------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCc
Confidence 3677775 455321 12233344 999999999999999999999998877887654321 1 00 0111
Q ss_pred HHhcCcEEEcCCCC--CCcccHHhhcC---c-CCCCCHHHHHHHHHHcCCChHHHhc--ccc-chhhh--------ccCC
Q 018040 188 DLRSRLSIIPQDPT--MFEGSVHNNLD---P-LEEYADEEIWEALDKCQLGNEVRKN--EGK-LESRV--------TENG 250 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~--l~~~tv~enl~---~-~~~~~~~~~~~~l~~~~l~~~~~~~--~~~-l~~~~--------~~~g 250 (362)
...-.+.|..|++. .+..++++... . ....+.+++.+.++.+++..+.... +.| .+... ....
T Consensus 74 ~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~ 153 (247)
T cd03275 74 SAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM 153 (247)
T ss_pred eEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence 11223444445432 22223333221 1 1234566778888998885332111 111 11111 2234
Q ss_pred CCCChhHHHHHHHHHHhcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhhcCeEEEEeC
Q 018040 251 ENWSMGQRQLVCLARVLLKK----SKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~----p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
.+||+|||||++||||++.+ |+++||||||++||+.....+.+.+.+..+ +.|+|+|||+.+.+..||++++|..
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 78999999999999999864 899999999999999999999999988754 7899999999888877999999874
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=4.1e-27 Score=229.82 Aligned_cols=214 Identities=20% Similarity=0.339 Sum_probs=173.1
Q ss_pred CcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC-CCCCHHHHh
Q 018040 112 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI-SSIGLHDLR 190 (362)
Q Consensus 112 ~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i-~~~~~~~~r 190 (362)
...-++++|++..-... ...+++|||++++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ...+..++|
T Consensus 254 g~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 34569999999876543 3589999999999999999999999999999999999999999999999997 666777765
Q ss_pred c-CcEEEcCCCC----CCcccHHhhcCcCCC----------CCHHHHHH----HHHHcCCChHHHhccccchhhhccCCC
Q 018040 191 S-RLSIIPQDPT----MFEGSVHNNLDPLEE----------YADEEIWE----ALDKCQLGNEVRKNEGKLESRVTENGE 251 (362)
Q Consensus 191 ~-~i~~v~Q~~~----l~~~tv~enl~~~~~----------~~~~~~~~----~l~~~~l~~~~~~~~~~l~~~~~~~g~ 251 (362)
+ .++|||.|.. ....|+.||+.+... .....+.+ .++++... +.+ ...+..
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr------~~~----~~~~a~ 402 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR------APS----PDAPAR 402 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc------CCC----CCcchh
Confidence 4 5999999873 345699999853211 11222222 22222211 111 123456
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
+||||.+||+-+||-|.++|++||..+||-|||..+.+.|.+.|.+.. +|+.|++||-+++++.. ||||.||.+|+++
T Consensus 403 ~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 403 SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee
Confidence 799999999999999999999999999999999999999999988754 68999999999999988 9999999999999
Q ss_pred EecChhH
Q 018040 330 EFDSPTR 336 (362)
Q Consensus 330 ~~g~~~~ 336 (362)
...++++
T Consensus 483 ~~~~~~~ 489 (501)
T COG3845 483 GIVPPEE 489 (501)
T ss_pred ccccccc
Confidence 8887766
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=8e-27 Score=229.07 Aligned_cols=225 Identities=20% Similarity=0.256 Sum_probs=148.3
Q ss_pred CCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE--CCEeCCCCCHHH
Q 018040 111 PSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI--DGIDISSIGLHD 188 (362)
Q Consensus 111 ~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i--~g~~i~~~~~~~ 188 (362)
|....+.++|+++.|.+. +.++|++|++.+|+++||+|+|||||||+|++|.|-..|..-++-+ -...+..-....
T Consensus 71 ~~s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred cccccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHH
Confidence 334569999999999765 5899999999999999999999999999999999998886544432 111111000000
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcC-CCCCH---HHHHHHHHHcCCChHHHh---cc---ccchhhhccCCCCCChhHH
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPL-EEYAD---EEIWEALDKCQLGNEVRK---NE---GKLESRVTENGENWSMGQR 258 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~-~~~~~---~~~~~~l~~~~l~~~~~~---~~---~~l~~~~~~~g~~LSgGqr 258 (362)
+..-+-...++..-.. --.|++.-. .+... ..+++.+...+.+.+-.+ .. .-+.........+||||||
T Consensus 149 v~~v~~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHHHhhhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence 0000000000000000 000111110 01011 122222333332221111 00 1134445566778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCE-EEEecChhH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGL-IEEFDSPTR 336 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~-i~~~g~~~~ 336 (362)
.|++|||||+.+|++|+|||||++||+++...+.+.|.+.... ++++++|.-+++.. |..|+.|++++ +...|+.+.
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 9999999999999999999999999999999999999876433 89999999999998 99999999999 566777776
Q ss_pred Hhh
Q 018040 337 LLE 339 (362)
Q Consensus 337 l~~ 339 (362)
...
T Consensus 307 y~~ 309 (614)
T KOG0927|consen 307 YVK 309 (614)
T ss_pred Hhh
Confidence 543
No 388
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=9.2e-28 Score=255.76 Aligned_cols=199 Identities=23% Similarity=0.280 Sum_probs=166.1
Q ss_pred CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC-c
Q 018040 128 HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-E 204 (362)
Q Consensus 128 ~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 204 (362)
+.+.+|+||+=-++||-.+||+|+|||||||||++|+|=.. ..+|+|+++|.+..+ +..+|.+|||-|+.... .
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999998753 247999999998643 56889999999987544 4
Q ss_pred ccHHhhcCcC------CCCCH----HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC-CE
Q 018040 205 GSVHNNLDPL------EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS-KV 273 (362)
Q Consensus 205 ~tv~enl~~~------~~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p-~i 273 (362)
.||||-|.+. .+.+. +-++++++.+++.+.. |..+|..|..||..||+|+.||=-|+.+| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 5999988642 22232 3467788888876543 45677888999999999999999999999 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh--hhhcCeEEEEeC-CEEEEecChhH
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS--VIDSDMVLLLSY-GLIEEFDSPTR 336 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~Dri~vl~~-G~i~~~g~~~~ 336 (362)
|+|||||||||.++...+++.+++.. .|+||++.-|+++. .+..|+++.|+. |+.+..|+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999865 68999999999974 345999999986 59999998654
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=8.7e-27 Score=209.68 Aligned_cols=172 Identities=19% Similarity=0.202 Sum_probs=119.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC-CHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI-GLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
++++++++.+| +.+|+||||||||||+.+|.-.+..... ....|..+.++ ....-...|.+.+|+..++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46778888887 8899999999999999999754432211 01112211000 00011245778888776554 2
Q ss_pred CcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHH
Q 018040 212 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL----LKKSKVLVLDEATASVDTAT 287 (362)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral----~~~p~illLDEPts~LD~~~ 287 (362)
.........+.++++. .....+...+||+|||||++||+|+ +.+|+++||||||++||+.+
T Consensus 84 -~~~~~~~~~~~~~l~~--------------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 84 -PLCVLSQDMARSFLTS--------------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred -cCCHHHHHHHHHHhcc--------------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 1111112333333332 1223456678999999999999999 69999999999999999999
Q ss_pred HHHHHHHHHhhc-C---CceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 288 DNLIQHTLGQHF-S---DCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 288 ~~~i~~~l~~~~-~---~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
...+.+.|.+.. + ++|||++||+++.+..+|+|.+|..++
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999988753 2 358999999999999999999998754
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.4e-26 Score=224.53 Aligned_cols=195 Identities=22% Similarity=0.294 Sum_probs=164.1
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.+-+++.+|+|.|+++..+.+.+++++++.-++++++|+||+||||+++++.+-..|..|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 446999999999988765689999999999999999999999999999999999999999987765 568
Q ss_pred cEEEcCCCCCC-cccH--HhhcC-cCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 193 LSIIPQDPTMF-EGSV--HNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 193 i~~v~Q~~~l~-~~tv--~enl~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
|+|-+|...=+ +..+ .+-.. ......++++++.+..+|+...+...+ ...||||||-||++|.+..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence 99999976322 2222 12111 122337899999999999876655432 2458999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
.+|.+|+|||||+.||.++-..+-+.|+.. +..||+|||+.+++.. |+.+++.++|++..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999876 3489999999999998 99999999999976
No 391
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.6e-25 Score=239.08 Aligned_cols=97 Identities=23% Similarity=0.301 Sum_probs=87.7
Q ss_pred cchh-hhccCCCCCChhHHHHHHHHHHhcC---CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhh
Q 018040 241 KLES-RVTENGENWSMGQRQLVCLARVLLK---KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI 315 (362)
Q Consensus 241 ~l~~-~~~~~g~~LSgGqrQRv~iAral~~---~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~ 315 (362)
+++. .+++...+|||||+||++|||+|++ +|+++||||||++||+.....+.+.|+++. ++.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3443 4678889999999999999999997 599999999999999999999999998864 5799999999999998
Q ss_pred hcCeEEEE------eCCEEEEecChhHH
Q 018040 316 DSDMVLLL------SYGLIEEFDSPTRL 337 (362)
Q Consensus 316 ~~Dri~vl------~~G~i~~~g~~~~l 337 (362)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999876
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.9e-26 Score=224.04 Aligned_cols=198 Identities=21% Similarity=0.294 Sum_probs=143.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|...+++..|+++ .+|++-++++..|-++|+|||||+||||||++|+. |.|.....+ +++|..-
T Consensus 79 ~Di~~~~fdLa~G~k--~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~~ 144 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGK--ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGDD 144 (582)
T ss_pred cceeeeeeeeeecch--hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheeccc
Confidence 469999999999865 58999999999999999999999999999999998 444332211 1111111
Q ss_pred EEEcCCCCCCcccHHhhcCcC-----CCCCHHHHHH-HHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 194 SIIPQDPTMFEGSVHNNLDPL-----EEYADEEIWE-ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~-----~~~~~~~~~~-~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
...-|+ .+-..+-+..+... .....+++.. +|.-+|..+.....|- .+||||-|-|++|||||
T Consensus 145 t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 145 TEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARAL 213 (582)
T ss_pred hHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHH
Confidence 111111 11122222222110 1112344444 7777777766555443 46899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHh
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLL 338 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~-~~g~~~~l~ 338 (362)
..+||||||||||+.||..+...+.+.|..+. .|+|+||||-+++.. |.-||.+++-|+- ..|+.++..
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 99999999999999999999999999998764 799999999999998 9999999886653 346655544
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.93 E-value=1.6e-25 Score=216.05 Aligned_cols=182 Identities=23% Similarity=0.347 Sum_probs=135.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++..++++.|++- .|.-=.=+|..||+++++||||-||||++++|+|.++|++|+ ..+ -+++|
T Consensus 343 v~y~~~~k~~g~F---~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 343 VEYPDLKKTYGDF---KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred eecchheeecCce---EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 4444555555421 233333345668999999999999999999999999999998 222 25889
Q ss_pred EcCCCC-CCcccHHhhcCcCCC--CCHHHH-HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 196 IPQDPT-MFEGSVHNNLDPLEE--YADEEI-WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 196 v~Q~~~-l~~~tv~enl~~~~~--~~~~~~-~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
=||-.. -|++||++-+.-... +....+ .+.++-+ .++..+.++..+|||||.|||+||.||.+++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl-----------~l~~i~e~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL-----------NLEDLLERPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc-----------chHHHHhcccccCCchhHHHHHHHHHhcccc
Confidence 999543 367899887642111 111111 1223333 3444555566678999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
++++||||++.||.+.+-.+.+.|++.. .++|.++|-||+-.+.. +||++|.+.
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999999999999998753 46899999999999998 999999973
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8e-26 Score=216.91 Aligned_cols=193 Identities=22% Similarity=0.295 Sum_probs=154.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.+-+.+|+|.|++.. +.++.++|-|.--.++|||||||.||||||++|.|-+.|..|+.+-+- |-+|
T Consensus 585 PvLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred CeeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4588999999998764 689999999999999999999999999999999999999999876432 3469
Q ss_pred EEEcCCCC--CC-cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 194 SIIPQDPT--MF-EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 194 ~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
|+.-|+.. |- ..|..|.+.-.-....++.+..|-.+||....... ....||||||-||++|-.-+..
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCC
Confidence 99999763 22 33777776533344566777788877775432211 2346899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhc-CeEEEEeCCEEEE
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS-DMVLLLSYGLIEE 330 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~-Dri~vl~~G~i~~ 330 (362)
|++|||||||++||.++...+.+.|.+.. ..||+||||-..+... -..+|+++-.|-+
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCChhh
Confidence 99999999999999999999999998763 4899999999888773 3567777655533
No 395
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.93 E-value=2.1e-24 Score=211.17 Aligned_cols=194 Identities=24% Similarity=0.335 Sum_probs=160.9
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|.++|+-.--|... .++..++|.|++|--+.|.||||||||+|.++|.|++|...|...+-- +.++
T Consensus 480 ~gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~m 547 (728)
T KOG0064|consen 480 NGIILENIPVITPAGD-VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNI 547 (728)
T ss_pred cceEEecCceeccCcc-eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------Ccce
Confidence 3588999988777654 578999999999999999999999999999999999999888775421 3469
Q ss_pred EEEcCCCCCCcccHHhhcCcC--------CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 194 SIIPQDPTMFEGSVHNNLDPL--------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~--------~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
-|+||.|++--+|.||.+-+. +.+.+.++...|..+.|+..+++ ..|.| .+.++-.-||||||||+++||
T Consensus 548 FYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~d-a~~dWkd~LsgGekQR~~mAR 625 (728)
T KOG0064|consen 548 FYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWD-AVRDWKDVLSGGEKQRMGMAR 625 (728)
T ss_pred EeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChh-hhccHHhhccchHHHHHHHHH
Confidence 999999998878999987542 24678889999999988765544 44454 334455679999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEE
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
.++++|+.-+|||.||++-++.+..+.+..+.. |.+.|-||||++....-..++-.
T Consensus 626 m~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 626 MFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 999999999999999999999999999988764 78999999999988765555544
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.91 E-value=8.8e-24 Score=185.57 Aligned_cols=209 Identities=20% Similarity=0.205 Sum_probs=151.1
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
...|++.++.|+|+... |++-|+|++++.|.+..+||.||||||||||+|+|-.-.-.|.|.+.|.+--.-..-.-...
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 45799999999998765 69999999999999999999999999999999999877777999999986532110000112
Q ss_pred cEEEcCC-----------CCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 193 LSIIPQD-----------PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 193 i~~v~Q~-----------~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
..|+--+ |.--+.++.+-|.-....+.++-++.++. ||-.+.=+-..+|-|||+||
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDI-------------LDIDLRWRMHKVSDGQRRRV 156 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhh-------------eeccceEEEeeccccchhhh
Confidence 3333221 11111133222211111111222222222 22222223455899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh--cCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~ 335 (362)
.||..|++.-++|+|||-|-.||...+..+.+.+++. .+++||+..||-.+-++. +.+++.|.+|+++..-+.+
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 9999999999999999999999999999999999875 358999999999998887 9999999999998844433
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.90 E-value=1.7e-23 Score=188.57 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=107.1
Q ss_pred eeeeeeEEEeCCc-EEEEEcCCCccHHHHHHHHH--------cCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 132 VLRGLTCTFLGGM-KTGIVGRTGSGKSTLIQTLF--------RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 132 vL~~isl~i~~Ge-~~~ivG~nGsGKSTLl~~l~--------gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
.+-++||++.+|+ +++|+||||||||||+++|. |++-|....+ .++|+.|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~ 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe
Confidence 3557999999996 79999999999999999998 5554432111 23343333211
Q ss_pred CcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 203 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 203 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
+. . +..+.++...+|+||||++.|++++ .+|+++++|||+++
T Consensus 79 lg--------------------------~-----------~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 79 IG--------------------------D-----------EQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred cC--------------------------c-----------hhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 00 0 0011112235699999999999885 89999999999999
Q ss_pred CCHHHHHHHH-HHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 283 VDTATDNLIQ-HTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 283 LD~~~~~~i~-~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
+|+.....+. ..++... .+.|+|++||+.+....||++++|++|++...+
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999988875 4565543 478999999996655569999999999998663
No 398
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.89 E-value=6e-23 Score=181.69 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=67.3
Q ss_pred CChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhhcCeEEEEeC
Q 018040 253 WSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 253 LSgGqrQRv~iAral~----~~p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
||+|||||++|||+++ .+|+++++|||+++||+.....+.+.+.+..+ ++|+|++||+++.+..+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 8999999999999995 69999999999999999999999999987643 5899999999998888999999986
No 399
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.4e-23 Score=194.26 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=69.3
Q ss_pred CCChhHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 252 NWSMGQRQLVCLARVLLK----KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~----~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
.|||||+||+++|++++. +|+++||||||++||+.+...+.+.+.+..++.|+|++||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998777889999999999776699999999874
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.8e-22 Score=183.62 Aligned_cols=181 Identities=14% Similarity=0.117 Sum_probs=108.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hc-----CcEEEcCCCCCCcccH
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RS-----RLSIIPQDPTMFEGSV 207 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~-----~i~~v~Q~~~l~~~tv 207 (362)
+++.+++.+| +.+|+||||||||||+.+|.-.+-...... ... ....++ +. .|-..++...- .-.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~~~--~~~ 85 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGNPG--NIQ 85 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeCCC--ccc
Confidence 4556666554 779999999999999999876553221100 000 011111 10 11111211100 002
Q ss_pred HhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH----hcCCCCEEEEeCCCCCC
Q 018040 208 HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV----LLKKSKVLVLDEATASV 283 (362)
Q Consensus 208 ~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra----l~~~p~illLDEPts~L 283 (362)
.+|+... ...+...++.... -.+.+..++.+.+ ....++.+||+|||||+.+|++ ++.+|+++|+||||++|
T Consensus 86 ~~n~~~~--~~q~~~~~~~~~~-~~e~l~~~~~~~~-~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~L 161 (213)
T cd03277 86 VDNLCQF--LPQDRVGEFAKLS-PIELLVKFREGEQ-LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGM 161 (213)
T ss_pred cCCceEE--EchHHHHHHHhCC-hHhHheeeecCCC-ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccC
Confidence 2333321 1222333332221 1122233332222 2345677899999999887755 45899999999999999
Q ss_pred CHHHHHHHHHHHHhhc-C-C-ceEEEEecChhhhhh-cC--eEEEEeCCE
Q 018040 284 DTATDNLIQHTLGQHF-S-D-CTVITIAHRITSVID-SD--MVLLLSYGL 327 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~-~-~-~tvi~itH~l~~~~~-~D--ri~vl~~G~ 327 (362)
|+.+...+.+.+.+.. + + .|+|++||++..... || +|++|++|+
T Consensus 162 D~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 162 DPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999998764 3 4 479999999876654 65 889999886
No 401
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=9.8e-22 Score=210.06 Aligned_cols=199 Identities=23% Similarity=0.253 Sum_probs=164.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC---CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-c
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP---TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-G 205 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ 205 (362)
..+|+|+|.-++||+.+.++||.|||||||+++++|-.+- ..|+|.+||.+.++... ++.++|++|+...++ .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3589999999999999999999999999999999998764 35799999999876654 677999999887775 5
Q ss_pred cHHhhcCcCC----------CCCHHH-----HHHHHHHcCCChHHHhccccchhhhccC-CCCCChhHHHHHHHHHHhcC
Q 018040 206 SVHNNLDPLE----------EYADEE-----IWEALDKCQLGNEVRKNEGKLESRVTEN-GENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 206 tv~enl~~~~----------~~~~~~-----~~~~l~~~~l~~~~~~~~~~l~~~~~~~-g~~LSgGqrQRv~iAral~~ 269 (362)
||+|-+++.. +.++.+ .+.+++..||+. ..||.+|.. ....|||||.||.+|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~-------~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH-------CADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchh-------hccceecccccccccCcccceeeeeeeeec
Confidence 9999987521 122222 224566666653 467777654 45789999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhh--hhhcCeEEEEeCCEEEEecChhHHh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITS--VIDSDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~--~~~~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+|+++.+||+|.|||..|.-++.+.+++.. -+.|.++.-|..+. ....|.|++|.+|+++.+|+.++++
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999999999999999864 36788888887643 3449999999999999999998875
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.85 E-value=2.2e-21 Score=169.07 Aligned_cols=136 Identities=22% Similarity=0.281 Sum_probs=100.3
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE-EEcCCCCCCcccHHhhcCcC
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS-IIPQDPTMFEGSVHNNLDPL 214 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~tv~enl~~~ 214 (362)
.++.+.++.++.|+|||||||||+++++....-..+|.+.... +. +.+ ++++....|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3445556679999999999999999998776655555544310 00 011 111111100
Q ss_pred CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHH
Q 018040 215 EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK----KSKVLVLDEATASVDTATDNL 290 (362)
Q Consensus 215 ~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~----~p~illLDEPts~LD~~~~~~ 290 (362)
+ -+. .+||+||+||++|||+|.. +|+++|+|||++++|+.....
T Consensus 72 ----------------i-----------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 ----------------I-----------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred ----------------e-----------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0 000 1179999999999999986 789999999999999999999
Q ss_pred HHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeC
Q 018040 291 IQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 291 i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
+.+.+.+.. +++++|++||+.+....+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999887753 36899999999999988999999974
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=9.6e-22 Score=190.04 Aligned_cols=185 Identities=25% Similarity=0.315 Sum_probs=127.7
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hc-------
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RS------- 191 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~------- 191 (362)
++..+|+.+. ..|..+- ..++|+++||+||||-||||.+++|+|.+.|.=|+- ++.+ +.++. ++
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp----~wdeVi~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP----SWDEVIKRFRGTELQ 150 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC----CHHHHHHHhhhhHHH
Confidence 3566787553 2333332 356899999999999999999999999999987754 2211 11111 11
Q ss_pred -----------CcEEEcC----CCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 192 -----------RLSIIPQ----DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 192 -----------~i~~v~Q----~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
++..=|| -|-.+.++|.|-+.-..+ .....++.++++ |+..+++...+||||
T Consensus 151 ~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de--~g~~devve~l~-----------L~nvl~r~v~~LSGG 217 (591)
T COG1245 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE--RGKFDEVVERLG-----------LENVLDRDVSELSGG 217 (591)
T ss_pred HHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh--cCcHHHHHHHhc-----------chhhhhhhhhhcCch
Confidence 1111122 122233444443321100 011223333333 445556666779999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhh-cCeEEEEeC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
|-||+|||.|++++++++++|||||-||...+-...+.++++.+ +++||+|.|||..+.. +|-|.++..
T Consensus 218 ELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 218 ELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999999999999999999999999999999999998876 6999999999999998 999988873
No 404
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.85 E-value=1.3e-20 Score=210.11 Aligned_cols=211 Identities=19% Similarity=0.211 Sum_probs=142.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------cCCCCCccEEEECCEeCCCCCH----------HHHhc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF----------RIVEPTAGLIAIDGIDISSIGL----------HDLRS 191 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----------gl~~p~~G~I~i~g~~i~~~~~----------~~~r~ 191 (362)
=|+|++.+|+-|..++|.|-||||||||++-.+ |. +.-+--|.+|-.+|..-+. +.+|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~-~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGP-SVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccc-cccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 489999999999999999999999999997554 22 2223457788777754321 12333
Q ss_pred CcEEEcC------CCCCCcccH--------------HhhcCcC------------CCCCH-----------------HHH
Q 018040 192 RLSIIPQ------DPTMFEGSV--------------HNNLDPL------------EEYAD-----------------EEI 222 (362)
Q Consensus 192 ~i~~v~Q------~~~l~~~tv--------------~enl~~~------------~~~~~-----------------~~~ 222 (362)
-.+-.|+ .+..|+..+ .-++.|. .++.. -.+
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 3332222 111221110 0001110 01111 112
Q ss_pred HHHHHHcCCChHHHhc-----cccch-hhhccCCCCCChhHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHH
Q 018040 223 WEALDKCQLGNEVRKN-----EGKLE-SRVTENGENWSMGQRQLVCLARVLLKK---SKVLVLDEATASVDTATDNLIQH 293 (362)
Q Consensus 223 ~~~l~~~~l~~~~~~~-----~~~l~-~~~~~~g~~LSgGqrQRv~iAral~~~---p~illLDEPts~LD~~~~~~i~~ 293 (362)
.++++.+.-.+.+.+. .-||. -.+|+...+|||||.||+-||.-|.++ +.++||||||.||++...+.+.+
T Consensus 1664 ~ea~~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1664 EEVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 2333333211111111 01222 246888999999999999999999876 78999999999999999999999
Q ss_pred HHHhhc-CCceEEEEecChhhhhhcCeEEEEe------CCEEEEecChhHHhhcCCc
Q 018040 294 TLGQHF-SDCTVITIAHRITSVIDSDMVLLLS------YGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 294 ~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~------~G~i~~~g~~~~l~~~~~~ 343 (362)
.++++. .|.|||+|.|+++.++.||.|+-|- .|+|++.|+|+++.+.+.+
T Consensus 1744 ~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S 1800 (1809)
T PRK00635 1744 QLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDS 1800 (1809)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCC
Confidence 998864 6899999999999999999999986 4799999999999887644
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=179.53 Aligned_cols=179 Identities=25% Similarity=0.389 Sum_probs=139.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--------CCCCccEEEECCEeCCCCCHHHHhcCcEEEcCC--
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--------VEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD-- 199 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~-- 199 (362)
..+|+|+||+|++|++++|+|+|||||||++++|+|. |+|++|.|.+--..+ -+.+|-+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~E 464 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYE 464 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCcccc
Confidence 3589999999999999999999999999999999986 578999997643222 2345543
Q ss_pred CCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 200 PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 200 ~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
|.+-.-|+.|.+.-. .-+-....++|+.+|+.+.+.. -.....||-|||-|..||+++...|.+++.||-
T Consensus 465 p~f~~~tilehl~s~-tGD~~~AveILnraGlsDAvly---------Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 465 PEFGEVTILEHLRSK-TGDLNAAVEILNRAGLSDAVLY---------RRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred cccCchhHHHHHhhc-cCchhHHHHHHHhhccchhhhh---------hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 222223777766321 1122334577888888764421 122356899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh--cCeEEEEeCCEEE
Q 018040 280 TASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID--SDMVLLLSYGLIE 329 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~ 329 (362)
-|.||+.|...+...+.++. .+.|++++||+.+.... -|+++.+.-|++.
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999999999998765 57899999999998875 6999998887654
No 406
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=2.7e-20 Score=190.51 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=92.9
Q ss_pred hhccCCCCCChhHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeE
Q 018040 245 RVTENGENWSMGQRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMV 320 (362)
Q Consensus 245 ~~~~~g~~LSgGqrQRv~iAral~~~p---~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri 320 (362)
.+|+....|||||.|||-||.-|.++. -++||||||.||-.+-.+.+++.|.++. +|.|||+|.|+|+.++.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 458999999999999999999999987 9999999999999999999999998864 689999999999999999999
Q ss_pred EEEe------CCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 321 LLLS------YGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 321 ~vl~------~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
+-|- .|+|++.|+|+++.+.+.+.-.+++.
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk 930 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLK 930 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHH
Confidence 9874 67999999999998865433333333
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.84 E-value=7.6e-21 Score=173.97 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=109.3
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE-EEcCCCCCCcccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS-IIPQDPTMFEGSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~tv~e 209 (362)
.+.+|+++++.+|++++|.||||+||||+++.++-. .+..++| |||.+...++ +.+
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------------------~~la~~g~~vpa~~~~~~--~~~ 74 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------------------VLMAQIGCFVPCDSADIP--IVD 74 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------------------HHHHHhCCCcCcccEEEe--ccc
Confidence 589999999999999999999999999999999821 1223444 6666542211 111
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh--cCCCCEEEEeCC---CCCCC
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL--LKKSKVLVLDEA---TASVD 284 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral--~~~p~illLDEP---ts~LD 284 (362)
+++..+++.+.. ...+|.|++|+..+++++ +.+|+++||||| |+++|
T Consensus 75 --------------~il~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 75 --------------CILARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred --------------eeEeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 122223332211 134799999999999999 899999999999 99999
Q ss_pred HHHHHHH-HHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 285 TATDNLI-QHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 285 ~~~~~~i-~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
+...... .+.+.+ ..++++|++||..+....||++..+++|++...++
T Consensus 127 ~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 9876533 244433 24789999999644444499999999999977654
No 408
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.8e-20 Score=175.22 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=63.3
Q ss_pred CCCChhHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-c---
Q 018040 251 ENWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-S--- 317 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~---------~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~--- 317 (362)
..+|+||+|+++|||+|+ .+|+++||||||++||+.....+.+.+.+.. .+++++|+...+.. |
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~ 258 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRR 258 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccC
Confidence 347999999999999985 7999999999999999999999999997653 46666666665555 5
Q ss_pred CeEEEEeCCEE
Q 018040 318 DMVLLLSYGLI 328 (362)
Q Consensus 318 Dri~vl~~G~i 328 (362)
++++.+++|++
T Consensus 259 ~~i~~l~~g~i 269 (270)
T cd03242 259 AQIFRVDAGTL 269 (270)
T ss_pred ccEEEEeCcEE
Confidence 78999999986
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.81 E-value=2.9e-20 Score=167.77 Aligned_cols=154 Identities=15% Similarity=0.109 Sum_probs=102.6
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCc
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV-EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDP 213 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~ 213 (362)
..++++.+|++++|+||||||||||+++|++.. .+..|.... . .+..+++..|....+. ..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~----------~~~~i~~~dqi~~~~~--~~d~i-- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A----------ESASIPLVDRIFTRIG--AEDSI-- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c----------cccccCCcCEEEEEec--Ccccc--
Confidence 455667789999999999999999999999432 222332110 0 0122333322211111 01110
Q ss_pred CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 018040 214 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293 (362)
Q Consensus 214 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~ 293 (362)
.+....+|.+++| +..+.+++.+|+++||||||+++|+.....+..
T Consensus 86 ---------------------------------~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 86 ---------------------------------SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ---------------------------------cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 0111234666665 666677788999999999999999987776654
Q ss_pred -HHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 018040 294 -TLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 294 -~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l 337 (362)
.++... .+.++|++||+.+.+..++++..++.|++...+...++
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 344433 47899999999988888999999999999888765443
No 410
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=9.5e-21 Score=182.16 Aligned_cols=201 Identities=20% Similarity=0.300 Sum_probs=132.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCEeCCCCCHHH----
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEPTAGLIAIDGIDISSIGLHD---- 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g~~i~~~~~~~---- 188 (362)
.|.++|.+.+-.++ ..+.+.|+.|-.|.++++|||||-||||||+-|+. +--|..=.|++..+.+..-+...
T Consensus 264 DIKiEnF~ISA~Gk--~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQGK--LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeecccc--eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 48888888877554 47899999999999999999999999999999873 22233334555444432111000
Q ss_pred H---hcCcEEEcCCCCC----Ccc--cHHhhcC-------c-CCCCCHHHHHHHHHHcCCChHHHhccccchhhhcc-CC
Q 018040 189 L---RSRLSIIPQDPTM----FEG--SVHNNLD-------P-LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE-NG 250 (362)
Q Consensus 189 ~---r~~i~~v~Q~~~l----~~~--tv~enl~-------~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~g 250 (362)
+ .++..++-.+..| -.+ |+.|-+. - +......+.++.|.-+| ++..+.+ ..
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLG-----------FskEMQ~rPt 410 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLG-----------FSKEMQERPT 410 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcC-----------CChhHhcCCc
Confidence 0 0111111111111 001 2222110 0 00111122223333222 3333333 34
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
..+|||.|-||+|||||..+|-+|.|||||++||......+-+.|..+ .+|.++||||-.++.. |..||.|++-++.
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 568999999999999999999999999999999999888888888766 4699999999999998 9999999998874
Q ss_pred E
Q 018040 330 E 330 (362)
Q Consensus 330 ~ 330 (362)
.
T Consensus 489 y 489 (807)
T KOG0066|consen 489 Y 489 (807)
T ss_pred h
Confidence 3
No 411
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=9.6e-20 Score=164.02 Aligned_cols=140 Identities=19% Similarity=0.129 Sum_probs=94.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~e 209 (362)
++++|++++. |++++|+||||||||||+++|+|... +...|.++.. -.+++|...+|. .|+.|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccchh
Confidence 4778877665 79999999999999999999987543 2235554421 135677555664 48999
Q ss_pred hcCcCCCCCHHHH---HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Q 018040 210 NLDPLEEYADEEI---WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286 (362)
Q Consensus 210 nl~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~ 286 (362)
|+.........+. .++++.++ +.+|+++|+||||+++|+.
T Consensus 79 ~l~~~~s~~~~e~~~~~~iL~~~~-------------------------------------~~~p~llllDEp~~glD~~ 121 (199)
T cd03283 79 DLRDGISYFYAELRRLKEIVEKAK-------------------------------------KGEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred ccccccChHHHHHHHHHHHHHhcc-------------------------------------CCCCeEEEEecccCCCCHH
Confidence 9865332211111 11221111 1699999999999999999
Q ss_pred HHHHHH-HHHHhh-cCCceEEEEecChhhhhh---cCeEEEE
Q 018040 287 TDNLIQ-HTLGQH-FSDCTVITIAHRITSVID---SDMVLLL 323 (362)
Q Consensus 287 ~~~~i~-~~l~~~-~~~~tvi~itH~l~~~~~---~Dri~vl 323 (362)
....+. ..+... ..+.|+|++||+++.+.. .++|-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 877654 355554 347899999999987764 3455544
No 412
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.77 E-value=3.5e-19 Score=165.27 Aligned_cols=189 Identities=17% Similarity=0.173 Sum_probs=126.1
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE--EECCEeCCCCCHHHHhcCc--EEEcCCCCCCcccHHhhcCc
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI--AIDGIDISSIGLHDLRSRL--SIIPQDPTMFEGSVHNNLDP 213 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I--~i~g~~i~~~~~~~~r~~i--~~v~Q~~~l~~~tv~enl~~ 213 (362)
+.+.+||+++|+||+|+|||||++.+.+.+....+++ .+-...-...+..++.+.+ .+|-..... +.......
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~---~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE---PPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC---CHHHHHHH
Confidence 5788999999999999999999999999887754332 2221111113444444433 111111110 11111100
Q ss_pred CCCCCHHHHHHHHHHcC-----CChHHHhccccchhhhccCCCCCChhH--------HHHHHHHHHhcCCCCEEEEeCCC
Q 018040 214 LEEYADEEIWEALDKCQ-----LGNEVRKNEGKLESRVTENGENWSMGQ--------RQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 214 ~~~~~~~~~~~~l~~~~-----l~~~~~~~~~~l~~~~~~~g~~LSgGq--------rQRv~iAral~~~p~illLDEPt 280 (362)
... .-+..+. ....| +-+.+.+++..+++..++.|..+|||+ +||+++||++.++++|.+| ||
T Consensus 88 ~~~-~~~~a~~-~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T 163 (249)
T cd01128 88 AEM-VLEKAKR-LVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--AT 163 (249)
T ss_pred HHH-HHHHHHH-HHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--ee
Confidence 000 0011111 11212 234567788889999999999999999 9999999999999999999 99
Q ss_pred CCCCHHHHHH-HHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 281 ASVDTATDNL-IQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 281 s~LD~~~~~~-i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
+.+|+.++.. ++ +.... .+.|.|++||++.....+|.|.||+.|.+ +++++..
T Consensus 164 ~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~ 218 (249)
T cd01128 164 ALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD 218 (249)
T ss_pred heecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC
Confidence 9999765543 33 33333 56899999999999999999999999997 4555543
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=1.8e-18 Score=185.28 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=89.9
Q ss_pred cchhh-hccCCCCCChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh
Q 018040 241 KLESR-VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 316 (362)
Q Consensus 241 ~l~~~-~~~~g~~LSgGqrQRv~iAral~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 316 (362)
+++.. +++...+|||||+|||+|||||..+| +++||||||+|||+.....+.+.|+++. +|.|||+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 34433 57788899999999999999999986 8999999999999999999999998864 57999999999999988
Q ss_pred cCeEEEE------eCCEEEEecChhHHhhc
Q 018040 317 SDMVLLL------SYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 317 ~Dri~vl------~~G~i~~~g~~~~l~~~ 340 (362)
||+|++| ++|+|++.|+++++...
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998653
No 414
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.76 E-value=4.2e-18 Score=159.72 Aligned_cols=142 Identities=18% Similarity=0.275 Sum_probs=103.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHH
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEI 222 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 222 (362)
.-++|+||||||||||+++|+|++.|.+|+|.++|+++...+ ..++...++++||...--..++.+|.. +
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k--- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------K--- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------H---
Confidence 578999999999999999999999999999999999997654 456667788999965322224443310 0
Q ss_pred HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCc
Q 018040 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC 302 (362)
Q Consensus 223 ~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~ 302 (362)
..| ...++|+ ++|+++|+|||++ .+.+...++....|.
T Consensus 183 -------------------------------~~~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~ 220 (270)
T TIGR02858 183 -------------------------------AEG---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGV 220 (270)
T ss_pred -------------------------------HHH---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCC
Confidence 011 1334444 5999999999974 334445555445689
Q ss_pred eEEEEecChhh--h-----------hh-cCeEEEEeCCEEEEecChhHHh
Q 018040 303 TVITIAHRITS--V-----------ID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 303 tvi~itH~l~~--~-----------~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
|+|++||+.+. + .. +||+++|++|+ ..|++++++
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99999997654 4 13 89999999887 677776654
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.76 E-value=2e-18 Score=185.16 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=90.3
Q ss_pred cchhh-hccCCCCCChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh
Q 018040 241 KLESR-VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 316 (362)
Q Consensus 241 ~l~~~-~~~~g~~LSgGqrQRv~iAral~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 316 (362)
+++.. +++...+|||||+|||+|||||..+| +++||||||++||+.....+.+.|+++. +|.|||+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 34433 57778899999999999999999997 9999999999999999999999998865 48999999999999888
Q ss_pred cCeEEEE------eCCEEEEecChhHHhhc
Q 018040 317 SDMVLLL------SYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 317 ~Dri~vl------~~G~i~~~g~~~~l~~~ 340 (362)
||+|++| ++|+|+..|+++++...
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998654
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.73 E-value=1.5e-17 Score=160.03 Aligned_cols=191 Identities=23% Similarity=0.302 Sum_probs=136.2
Q ss_pred EEeCCCCCceeeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 123 VRYAPHLPLVLRGLTCTFLGG-----MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~G-----e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
+.|++.. ..+.+..+.|+.| |++..+|.||.||||++++++|.++|+.|. ++.. -.++|=|
T Consensus 343 y~Yp~m~-k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~-------lnVSykp 408 (592)
T KOG0063|consen 343 YSYPKMK-KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPV-------LNVSYKP 408 (592)
T ss_pred eccCcce-eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccc-------cceeccc
Confidence 3455443 3678899999988 478999999999999999999999998762 1111 1478888
Q ss_pred CCCC-CCcccHHhhcCc--CCCC-CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 198 QDPT-MFEGSVHNNLDP--LEEY-ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 198 Q~~~-l~~~tv~enl~~--~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|... -+.+|||.-+.- ...+ ...-+.++++-+. .+..+++...+|||||.||++||.+|=+.+++
T Consensus 409 qkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~-----------ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQ-----------IENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred cccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhh-----------HHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 8754 356788875521 0111 1122223333332 33344455567899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhh--cCCceEEEEecChhhhhh-cCeEEEEeCC--EEEEecChhHHh
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYG--LIEEFDSPTRLL 338 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~Dri~vl~~G--~i~~~g~~~~l~ 338 (362)
++.|||.+-||.+.+...-..+++. ..++|-.+|.||+-.... +|||+|.+.- .....-+|..++
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll 547 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLL 547 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHH
Confidence 9999999999999887776667663 357899999999988877 9999998743 233334455554
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.73 E-value=1.7e-17 Score=149.83 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=94.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE-EEcCCCCCCcccHH
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS-IIPQDPTMFEGSVH 208 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~tv~ 208 (362)
.++.+|+++++++|++++|.||||+||||+++++.++. +..++| +||-.. ...++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 35899999999999999999999999999999998873 111222 222221 112445
Q ss_pred hhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 018040 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288 (362)
Q Consensus 209 enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~ 288 (362)
+++... .+..+ .+.++.+.+|+|++|+. .+-+++.+|+++|||||++|+|+...
T Consensus 73 d~I~~~--------------~~~~d-----------~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSR--------------LSNDD-----------SMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEe--------------cCCcc-----------ccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHH
Confidence 555211 11110 11222345799999764 55567899999999999999999765
Q ss_pred HHH-HHHHHhhc-CCceEEEEecChhhhhh
Q 018040 289 NLI-QHTLGQHF-SDCTVITIAHRITSVID 316 (362)
Q Consensus 289 ~~i-~~~l~~~~-~~~tvi~itH~l~~~~~ 316 (362)
..+ ...++.+. .+.++|++||+.+.+..
T Consensus 127 ~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 127 FAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 444 33444432 47899999999988776
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.71 E-value=1.9e-17 Score=150.93 Aligned_cols=154 Identities=15% Similarity=0.070 Sum_probs=98.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~e 209 (362)
.+.+|++++..+ ++++|+|||||||||+++++++..-. |. .|..+ + ..+.+++++.| +|. .++.+
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p--~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---P--ASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---c--cccceecceee---EeccCCchh
Confidence 588999999887 99999999999999999999875422 11 11111 1 11234565544 222 23333
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh--cCCCCEEEEeCC---CCCCC
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL--LKKSKVLVLDEA---TASVD 284 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral--~~~p~illLDEP---ts~LD 284 (362)
|+... .|.=...+..+++++ +.+|+++||||| |+++|
T Consensus 85 ~ls~g--------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD 126 (216)
T cd03284 85 DLAGG--------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYD 126 (216)
T ss_pred hhccC--------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Confidence 33211 011122233344444 469999999999 88899
Q ss_pred HHHH-HHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 018040 285 TATD-NLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 285 ~~~~-~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l 337 (362)
.... ..+.+.+.+. .++|+|++||+.+....+|++..+++|++...+..+++
T Consensus 127 ~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 127 GLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 7552 3444444332 37899999999866666888877888888776666555
No 419
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.69 E-value=3.3e-17 Score=131.97 Aligned_cols=75 Identities=21% Similarity=0.178 Sum_probs=69.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
++|++++|++++||+++|+||||||||||++++. +|++.++|.++..++.++.++.++++||+ +|.+|+++|
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999888877777788889888 899999999
Q ss_pred cCc
Q 018040 211 LDP 213 (362)
Q Consensus 211 l~~ 213 (362)
|..
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 975
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.66 E-value=1.2e-15 Score=149.33 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=66.2
Q ss_pred CCCChhHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh---cC
Q 018040 251 ENWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID---SD 318 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~---------~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~---~D 318 (362)
..+|.||+|+++||++|+ .+|+++|||||+++||+..+..+.+.+.+. +..++++||+.+.+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 368999999999999985 799999999999999999999999988653 4589999998876654 35
Q ss_pred eEEEEeCCEE
Q 018040 319 MVLLLSYGLI 328 (362)
Q Consensus 319 ri~vl~~G~i 328 (362)
+++.|++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.65 E-value=6.5e-16 Score=140.84 Aligned_cols=169 Identities=21% Similarity=0.282 Sum_probs=99.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHH-HcCCC-CC-ccEEEECCEeCCCC------CHHHHhcCcEEEcCCCCCC-
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTL-FRIVE-PT-AGLIAIDGIDISSI------GLHDLRSRLSIIPQDPTMF- 203 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l-~gl~~-p~-~G~I~i~g~~i~~~------~~~~~r~~i~~v~Q~~~l~- 203 (362)
+...+.+.+ ..++|+|||||||||++.+| ..+-. +. +.+. .....+ ........+...+++..-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~----~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRG----SKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccc----cccccccccccccccccccccccccccccccc
Confidence 345555554 59999999999999999999 34431 11 1110 011000 0011122344444433211
Q ss_pred ---cc--cHHhhcCc---------CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh--
Q 018040 204 ---EG--SVHNNLDP---------LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL-- 267 (362)
Q Consensus 204 ---~~--tv~enl~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral-- 267 (362)
.. .+...+.. .......++.+.+....+... .||||||-+++||--|
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~ 153 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLAL 153 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccc
Confidence 11 11111110 112234555555554443321 6899999999998554
Q ss_pred --cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEe
Q 018040 268 --LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 268 --~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
+.+++++|||||.++||......+.+.|++..++.-+|++||+......||+.+.+.
T Consensus 154 ~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 154 QRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp HTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 457899999999999999999999999998887889999999999999999877654
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.60 E-value=5.9e-15 Score=134.31 Aligned_cols=131 Identities=20% Similarity=0.164 Sum_probs=88.9
Q ss_pred eeeeeeEEEeCC--cEEEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc--c
Q 018040 132 VLRGLTCTFLGG--MKTGIVGRTGSGKSTLIQTLF--RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE--G 205 (362)
Q Consensus 132 vL~~isl~i~~G--e~~~ivG~nGsGKSTLl~~l~--gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~--~ 205 (362)
+-+|+++ .++ .+++|.||||+|||||++.+. +++ +..|...... .-.++|..|...-+. .
T Consensus 18 vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~ 83 (213)
T cd03281 18 VPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRE 83 (213)
T ss_pred EcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCcc
Confidence 4455554 444 789999999999999999998 333 4566654421 124677777543221 1
Q ss_pred cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 206 tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
++.+++ ..+ .-+-||+++|++++.+|+++|||||++|+|+
T Consensus 84 si~~~~--------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 84 SVSSGQ--------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred Chhhcc--------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 222221 000 2345999999999999999999999999998
Q ss_pred HHH-HHHHHHHHhhc-C---CceEEEEecChhhhhh
Q 018040 286 ATD-NLIQHTLGQHF-S---DCTVITIAHRITSVID 316 (362)
Q Consensus 286 ~~~-~~i~~~l~~~~-~---~~tvi~itH~l~~~~~ 316 (362)
... ..+...++... . +.++|++||+++.+..
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 754 44445565543 2 2489999999998776
No 423
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.59 E-value=9.6e-16 Score=136.43 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=49.4
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHhhc--CCceEEEEecChhhhhhcCe
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ-HTLGQHF--SDCTVITIAHRITSVIDSDM 319 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~l~~~~~~Dr 319 (362)
..+|+|++|...+.+. +.+|+++|+|||++++|+.....+. ..++... .+.++|++||+.+....+|+
T Consensus 60 s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 4568888874444433 3499999999999999998766654 4455443 37899999999975555764
No 424
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.58 E-value=3.3e-14 Score=141.66 Aligned_cols=168 Identities=18% Similarity=0.226 Sum_probs=111.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe---CCC-----CCHHHHhcCcEEEcCC--C
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID---ISS-----IGLHDLRSRLSIIPQD--P 200 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~---i~~-----~~~~~~r~~i~~v~Q~--~ 200 (362)
.+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+. +.+ ++...+++.+.++.+. |
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~ 225 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQP 225 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCC
Confidence 489999 9999999999999999999999999999999999999996544 332 2334467778888653 2
Q ss_pred CCCc-------ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH-HHHHHHhcCCCC
Q 018040 201 TMFE-------GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL-VCLARVLLKKSK 272 (362)
Q Consensus 201 ~l~~-------~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR-v~iAral~~~p~ 272 (362)
.+.. .|+.|++ +..|.+ +--+.+.+ | .--|-|| ++++ +.+|+
T Consensus 226 ~~~r~~~~~~a~~iAEyf---------------r~~g~~--Vll~~Dsl-t---------r~A~A~rEisl~---~ge~P 275 (438)
T PRK07721 226 ALMRIKGAYTATAIAEYF---------------RDQGLN--VMLMMDSV-T---------RVAMAQREIGLA---VGEPP 275 (438)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHCCCc--EEEEEeCh-H---------HHHHHHHHHHHh---cCCCC
Confidence 2110 0222222 111110 00000000 0 0011111 1111 12222
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhc---CCc-----eEEEEecChhhhhhcCeEEEEeCCEEEEecChhH
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQHF---SDC-----TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~ 336 (362)
.|+|+|+.....+.+.+.+.. +|. ||++.+||++. ..||++.+|.+|+|+.+++..+
T Consensus 276 ------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 ------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 478999999999999987754 464 99999999985 4599999999999999987654
No 425
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=7.9e-15 Score=164.64 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=99.2
Q ss_pred CCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH------HHHHHHHhcCCCCEEE
Q 018040 202 MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ------LVCLARVLLKKSKVLV 275 (362)
Q Consensus 202 l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ------Rv~iAral~~~p~ill 275 (362)
.|+||+.+||.+....+++ ..+++.++...++..++.| ++.++.++ .||||||| |++||||++.+|++|+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 4889999999984344444 5778888888999989888 88887765 89999999 9999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhc------CCceEEEEecChhhhhh------cCeEEEEe
Q 018040 276 LDEATASVDTATDNLIQHTLGQHF------SDCTVITIAHRITSVID------SDMVLLLS 324 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~l~~~~~------~Dri~vl~ 324 (362)
|||||++||+.+...+.+.|.... .+.|+|+|||+++.+.. ||+.+-+.
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 999999999999998888886541 36799999999998764 46666554
No 426
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.55 E-value=7.2e-15 Score=151.91 Aligned_cols=89 Identities=20% Similarity=0.338 Sum_probs=77.3
Q ss_pred cccchhhhccCC------CCCChhHHHHHHHHHHhc----------CCCCEEEEeCCC-CCCCHHHHHHHHHHHHhhcCC
Q 018040 239 EGKLESRVTENG------ENWSMGQRQLVCLARVLL----------KKSKVLVLDEAT-ASVDTATDNLIQHTLGQHFSD 301 (362)
Q Consensus 239 ~~~l~~~~~~~g------~~LSgGqrQRv~iAral~----------~~p~illLDEPt-s~LD~~~~~~i~~~l~~~~~~ 301 (362)
+.++++.+++.| .+||||||||++|||||+ .+|+++|||||| ++||+.+...+.+.|... ++
T Consensus 449 ~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~ 527 (562)
T PHA02562 449 DEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KD 527 (562)
T ss_pred chhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CC
Confidence 445556776666 689999999999999987 599999999998 789999999999999988 78
Q ss_pred ceEEEEecChhhhhhcCeEEEEeC-CEE
Q 018040 302 CTVITIAHRITSVIDSDMVLLLSY-GLI 328 (362)
Q Consensus 302 ~tvi~itH~l~~~~~~Dri~vl~~-G~i 328 (362)
.|||+|||+.+....||++++|++ |+.
T Consensus 528 ~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 528 TNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred CeEEEEECchhchhhhhcEEEEEEECCe
Confidence 899999999887777999999986 543
No 427
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.54 E-value=1.2e-14 Score=154.16 Aligned_cols=145 Identities=15% Similarity=0.211 Sum_probs=96.9
Q ss_pred cEEEEEEEEEeCCCCCceee-----eeeEEEeCC-cEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCEeCCCCCHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLR-----GLTCTFLGG-MKTGIVGRTGSGKSTLIQTLFRI-VEPTAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~-----~isl~i~~G-e~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~~ 187 (362)
.+.++++.. |++. .+|+++.++ ++++|+||||+|||||+++++|. +.+..|.
T Consensus 295 ~i~l~~~rh-------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~-------------- 353 (771)
T TIGR01069 295 KIILENARH-------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI-------------- 353 (771)
T ss_pred CEEEccccC-------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC--------------
Confidence 466766543 2343 378888887 99999999999999999999987 3343331
Q ss_pred HHhcCcEEEcCCCC-CCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 188 DLRSRLSIIPQDPT-MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 188 ~~r~~i~~v~Q~~~-l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+||.... .+ .+.+++. ....++ ..+.++..++|+|++|+..|+++
T Consensus 354 -------~Vpa~~~~~~--~~~d~i~--~~i~~~-----------------------~si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 354 -------PIPANEHSEI--PYFEEIF--ADIGDE-----------------------QSIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred -------CccCCccccc--cchhhee--eecChH-----------------------hHHhhhhhHHHHHHHHHHHHHHh
Confidence 3333321 00 0111110 000110 00111224579999999999988
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHH-HHHHHhhc-CCceEEEEecChhhhh
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLI-QHTLGQHF-SDCTVITIAHRITSVI 315 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i-~~~l~~~~-~~~tvi~itH~l~~~~ 315 (362)
+ .+|+++|||||++|+|+.....+ ...+..+. .++++|++||+.+...
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 7 78999999999999999988877 45555543 5789999999987643
No 428
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.50 E-value=4.3e-14 Score=146.11 Aligned_cols=77 Identities=21% Similarity=0.171 Sum_probs=71.2
Q ss_pred CCCChhHHHHHHHHHHhcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCC
Q 018040 251 ENWSMGQRQLVCLARVLLKK----SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYG 326 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~----p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G 326 (362)
..|||||+||++|||+++.. |+++||||||+|||+.+...+.+.|++..+++|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 36899999999999999985 69999999999999999999999999877789999999999988789999999986
Q ss_pred E
Q 018040 327 L 327 (362)
Q Consensus 327 ~ 327 (362)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 4
No 429
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.46 E-value=1.4e-13 Score=125.09 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHhhc
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEAT-----ASVDTATDNLIQHTLGQHF 299 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPt-----s~LD~~~~~~i~~~l~~~~ 299 (362)
|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 9999999999999998753
No 430
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.46 E-value=7.1e-14 Score=134.88 Aligned_cols=172 Identities=23% Similarity=0.268 Sum_probs=112.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE----cCCCCCCcccHHhhcCcCC-
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII----PQDPTMFEGSVHNNLDPLE- 215 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v----~Q~~~l~~~tv~enl~~~~- 215 (362)
.+|+..++||.||-||||-++.++|-.+|.-|.-- ++- +|..-++|- .|+. |..-+.+|+.-..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp--------~w~~il~~frgselq~y--ftk~le~~lk~~~k 166 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPP--------DWQEILTYFRGSELQNY--FTKILEDNLKAIIK 166 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCc--------chHHHhhhhhhHHHhhh--hhhhccccccCcCC
Confidence 57999999999999999999999999999877542 111 111122221 1111 1112223332100
Q ss_pred --------CCCHHHHHHHHHHc----CCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 216 --------EYADEEIWEALDKC----QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 216 --------~~~~~~~~~~l~~~----~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
+..+..+...++.. .....+.. ..|+..+.+...+||||+-||.+||.+.+++++++++|||.+-|
T Consensus 167 pQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~--~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 167 PQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQ--LDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHH--HHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 00000011111100 00001111 12334444555679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeC
Q 018040 284 DTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSY 325 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~ 325 (362)
|...+..-...++.+. .++=||+|.||++.+.. +|-|-++..
T Consensus 245 DVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 245 DVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred hHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 9998888888888764 57899999999999988 899988874
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.46 E-value=2e-13 Score=140.51 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 252 NWSMGQRQLVCLARVLLK----KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~----~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
.|||||+||++||++++. +|+++|||||++|||..+...+.+.+++..++.+||+|||++..+..||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 479999999999999997 5899999999999999999999999998877799999999999887799999999753
No 432
>PRK14079 recF recombination protein F; Provisional
Probab=99.44 E-value=1.1e-12 Score=128.09 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEE
Q 018040 252 NWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~---------~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~v 322 (362)
-+|+||++++++|+.|+ .+|++++||||++.||+.....+.+.+.... .++|..| +.-..+|+++.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t---~~~~~~~~~~~ 337 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGT---EAPPGAALTLR 337 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcC---CCCCCCceEEE
Confidence 47999999999999998 8999999999999999999999998886432 2333333 23344999999
Q ss_pred EeCCEEEEecC
Q 018040 323 LSYGLIEEFDS 333 (362)
Q Consensus 323 l~~G~i~~~g~ 333 (362)
+++|++.-..+
T Consensus 338 ~~~~~~~~~~~ 348 (349)
T PRK14079 338 IEAGVFTPEAP 348 (349)
T ss_pred EeccEecCCCC
Confidence 99998865443
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=1.1e-12 Score=120.03 Aligned_cols=138 Identities=18% Similarity=0.174 Sum_probs=85.3
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHH
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVH 208 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 208 (362)
..+.+|+++.+.+|++++|.||||+||||+++++++ .+.+..|.....- .. ++++..|=..-+ ...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~----------~~~~~~~i~~~~--~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA----------TLSIFDSVLTRM--GAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce----------EEeccceEEEEe--cCc
Confidence 358999999999999999999999999999999999 6677788765421 11 233332211100 111
Q ss_pred hhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 018040 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288 (362)
Q Consensus 209 enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~ 288 (362)
|++.. ++.+ + ..+-+|+.-.-.-+.+|+++|||||.+|.|+...
T Consensus 85 d~~~~---------------------------~~St--------F-~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 85 DSIQH---------------------------GMST--------F-MVELSETSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred ccccc---------------------------ccch--------H-HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 11110 0000 0 1122233222223467999999999888886554
Q ss_pred HHH-HHHHHhhc--CCceEEEEecChhhhhh
Q 018040 289 NLI-QHTLGQHF--SDCTVITIAHRITSVID 316 (362)
Q Consensus 289 ~~i-~~~l~~~~--~~~tvi~itH~l~~~~~ 316 (362)
..+ ...++.+. .+.++|++||+.+....
T Consensus 129 ~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 129 IAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 443 33444332 36899999999887543
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.42 E-value=2.4e-12 Score=118.56 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=91.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHH-HHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTL-IQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTL-l~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
.+.++++...+++. +++|+++.|.|++||||||| ++.+.++.++....+++.... ++.++.+.
T Consensus 7 ~~~~~~ld~~l~gg-----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~~~~- 70 (230)
T PRK08533 7 ELSRDELHKRLGGG-----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEFIKQ- 70 (230)
T ss_pred EEEEeeeehhhCCC-----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHHHH-
Confidence 35667777666542 78899999999999999999 689998876544444443211 11111111
Q ss_pred EEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCC--hHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC--
Q 018040 194 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLG--NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK-- 269 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~-- 269 (362)
++..+.. +.... +.+. .+.- ...+|+++.++-.+++.+-.
T Consensus 71 --------------------------------~~~~g~~~~~~~~~--~~l~-~~~~-~~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 71 --------------------------------MMSLGYDINKKLIS--GKLL-YIPV-YPLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred --------------------------------HHHhCCchHHHhhc--CcEE-EEEe-cccccChHHHHHHHHHHHHHHH
Confidence 1111110 00000 0000 0000 01246666555555444433
Q ss_pred --CCCEEEEeCCCCCC----CHHHHHHHHHHHHhhc-CCceEEEEecChhh--------hhh-cCeEEEEe
Q 018040 270 --KSKVLVLDEATASV----DTATDNLIQHTLGQHF-SDCTVITIAHRITS--------VID-SDMVLLLS 324 (362)
Q Consensus 270 --~p~illLDEPts~L----D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--------~~~-~Dri~vl~ 324 (362)
+|+++++||||+.+ |+...+.+.+.++... .++|+++ ||+... +.. ||-|+.|+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 69999999999999 7777778888887664 3665555 565433 233 78888887
No 435
>PRK13695 putative NTPase; Provisional
Probab=99.40 E-value=3e-13 Score=119.06 Aligned_cols=78 Identities=18% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDE--ATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDE--Pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
..+||+++-++.+++..+.+|+++++|| |+.++|+...+.+.+++ ..++++|+++|+-.....+|+|..+.+|+|
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 3489999999999999999999999999 55566655555555554 247899999999555556999999999999
Q ss_pred EEe
Q 018040 329 EEF 331 (362)
Q Consensus 329 ~~~ 331 (362)
.+.
T Consensus 154 ~~~ 156 (174)
T PRK13695 154 YEL 156 (174)
T ss_pred EEE
Confidence 876
No 436
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.39 E-value=3.5e-12 Score=135.92 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=59.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHhh-cCCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH-TLGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~-~l~~~-~~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
+.+|+||+|++.|++++ .+|+++|||||++|+|+.....+.. .+... ..++++|++||+.+.... +|+..++ ++.
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~ 466 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE-NAS 466 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EEE
Confidence 45699999999999999 8999999999999999988777754 44443 247899999999888776 5555443 344
Q ss_pred E
Q 018040 328 I 328 (362)
Q Consensus 328 i 328 (362)
+
T Consensus 467 ~ 467 (782)
T PRK00409 467 V 467 (782)
T ss_pred E
Confidence 4
No 437
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=1.7e-12 Score=143.20 Aligned_cols=81 Identities=17% Similarity=0.079 Sum_probs=72.9
Q ss_pred hccCCCCCChhHHHHHHHHHHhcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhh
Q 018040 246 VTENGENWSMGQRQLVCLARVLLK----------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSV 314 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~----------~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~ 314 (362)
......+|||||++|++||+||+. +|++|||||||++||+.+...+.+.|..+. .|++|++|||+++..
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 344568899999999999999985 799999999999999999999999998764 578999999999999
Q ss_pred hh-cCeEEEEeCC
Q 018040 315 ID-SDMVLLLSYG 326 (362)
Q Consensus 315 ~~-~Dri~vl~~G 326 (362)
.. +|+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 88 9999999864
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.36 E-value=1e-12 Score=126.12 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=98.8
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE 215 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~ 215 (362)
+++.++.|+.++|+||+|||||||+++|++++++..|.+.++. ..++.... +..+.++.+.. -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~----------~~~-- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKG----------GQG-- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCC----------CCC--
Confidence 4567889999999999999999999999999999989888753 22222111 11122211110 000
Q ss_pred CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 018040 216 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL 295 (362)
Q Consensus 216 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l 295 (362)
+++....-.++.+|-++|+++++|||.+ ....+.+
T Consensus 202 --------------------------------------~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l 236 (308)
T TIGR02788 202 --------------------------------------LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFI 236 (308)
T ss_pred --------------------------------------cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence 0000112245667888999999999996 2344556
Q ss_pred HhhcCCc-eEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhh
Q 018040 296 GQHFSDC-TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 296 ~~~~~~~-tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+....|. +++.++|..+.....||+..|..|++...|.+.+.+.
T Consensus 237 ~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 237 RAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 5554554 6799999999666699999999999998898888763
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.34 E-value=1.2e-11 Score=109.38 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=61.3
Q ss_pred hccCCCCCChhHHH------HHHHHHHhcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHhhc-CCceEEEEecChhh--
Q 018040 246 VTENGENWSMGQRQ------LVCLARVLLKKSKVLVLDEATASVD---TATDNLIQHTLGQHF-SDCTVITIAHRITS-- 313 (362)
Q Consensus 246 ~~~~g~~LSgGqrQ------Rv~iAral~~~p~illLDEPts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-- 313 (362)
....+..+|+|++| +...+.+...+|+++++|||++.+| ......+.+.+.... .+.|+|+++|+...
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 34455678999998 4445555567899999999999999 767777777776643 47899999998764
Q ss_pred -------hhh-cCeEEEEe
Q 018040 314 -------VID-SDMVLLLS 324 (362)
Q Consensus 314 -------~~~-~Dri~vl~ 324 (362)
+.. ||.|+.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 555 99999998
No 440
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.31 E-value=1.2e-11 Score=127.82 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=87.1
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEE
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKK--SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~--p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~v 322 (362)
+.+...+|||||.||+.||.-+-.. -=+++||||+.||-+.--.++.+.|+.++ .|.|+|+|.||.+++..||+|+=
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iID 554 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIID 554 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEe
Confidence 3566789999999999999999876 46889999999999988888889988765 58999999999999999999998
Q ss_pred Ee------CCEEEEecChhHHhhcCCc
Q 018040 323 LS------YGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 323 l~------~G~i~~~g~~~~l~~~~~~ 343 (362)
|- .|+|+..|+|+++++++.+
T Consensus 555 iGPgAG~~GGeIv~~Gtp~~i~~~~~S 581 (935)
T COG0178 555 IGPGAGEHGGEIVAEGTPEELLANPES 581 (935)
T ss_pred eCCCCCcCCCEEEEccCHHHHHhCCcc
Confidence 74 6899999999999998654
No 441
>PRK01156 chromosome segregation protein; Provisional
Probab=99.30 E-value=6.1e-12 Score=137.00 Aligned_cols=76 Identities=22% Similarity=0.290 Sum_probs=66.6
Q ss_pred CCCCCChhHHHHHHH------HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-cC--C-ceEEEEecChhhhhhcC
Q 018040 249 NGENWSMGQRQLVCL------ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH-FS--D-CTVITIAHRITSVIDSD 318 (362)
Q Consensus 249 ~g~~LSgGqrQRv~i------Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~-~~--~-~tvi~itH~l~~~~~~D 318 (362)
.+..|||||+||++| ||+++.+|++++|||||++||+.....+.+.+... .. + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 59999999999999999999999999998888643 22 3 48999999999887799
Q ss_pred eEEEEe
Q 018040 319 MVLLLS 324 (362)
Q Consensus 319 ri~vl~ 324 (362)
+|+.+.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
No 442
>PRK03918 chromosome segregation protein; Provisional
Probab=99.30 E-value=5.6e-12 Score=137.05 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=66.9
Q ss_pred CCCCCChhHHH------HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEE
Q 018040 249 NGENWSMGQRQ------LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVL 321 (362)
Q Consensus 249 ~g~~LSgGqrQ------Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~ 321 (362)
.+..|||||+| |+||||+++.+|+++||||||++||+.....+.+.+.... .+.|||+|||+.+....||+++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEE
Confidence 45679999999 5666678899999999999999999999999999998754 3579999999998766699999
Q ss_pred EEeC
Q 018040 322 LLSY 325 (362)
Q Consensus 322 vl~~ 325 (362)
+|+.
T Consensus 865 ~l~~ 868 (880)
T PRK03918 865 RVSL 868 (880)
T ss_pred EEEe
Confidence 9983
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.30 E-value=1.9e-11 Score=121.16 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=116.2
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.++-+.++..|... ..+++++ +.+.+|++++|+|++|+|||||+++|+|..+|+.|.|.+.|+...
T Consensus 129 ~~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~----------- 195 (432)
T PRK06793 129 HAFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR----------- 195 (432)
T ss_pred CchheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-----------
Confidence 346677777777543 3478875 999999999999999999999999999999999988877664321
Q ss_pred EEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc-----
Q 018040 194 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL----- 268 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~----- 268 (362)
++++.+ ...+...++. .+.+-....+-|.|+|+|++.+.+.+
T Consensus 196 ------------ev~e~~-----------~~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 196 ------------EVKDFI-----------RKELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred ------------cHHHHH-----------HHHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 122221 1111111111 01111223456999999999998887
Q ss_pred --CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 269 --KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 269 --~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
.++-++++|+||...|+. +.+-..+.+.. .|.+..+.||....++++-+ .++|.|...++
T Consensus 243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 789999999999999996 55555555543 46788888884444444443 46888876554
No 444
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.29 E-value=8.6e-12 Score=113.33 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=52.9
Q ss_pred CCCChhHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhh
Q 018040 251 ENWSMGQRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSV 314 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p---~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~ 314 (362)
..+|.|++|.+.|+.+++..+ .++++|||-++|+|...+.+.+.+....+ +.-+|++||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999998888776 89999999999999999999999987665 78999999998754
No 445
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=3.3e-11 Score=109.90 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=82.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHH
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVH 208 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~ 208 (362)
++-+|++|+.++|++++|.||||+||||+++.+.+..-.. .|.- + +.+ +.+++++. .+|. ....
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-v--------pa~--~~~i~~~~---~i~~~~~~~ 83 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-V--------PAK--SMRLSLVD---RIFTRIGAR 83 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-c--------Ccc--ccEecccc---EEEEecCcc
Confidence 5889999999999999999999999999999988763221 1210 0 000 00111110 1111 1112
Q ss_pred hhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 018040 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 288 (362)
Q Consensus 209 enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~ 288 (362)
+++...... +. -|-+++.-.-..+.+|+++|||||++|+|+...
T Consensus 84 d~~~~~~St-----------------------------------F~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg 127 (218)
T cd03286 84 DDIMKGEST-----------------------------------FM-VELSETANILRHATPDSLVILDELGRGTSTHDG 127 (218)
T ss_pred cccccCcch-----------------------------------HH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence 222111000 00 122333222223468999999999999999887
Q ss_pred HHHHHH-HHhhcC--CceEEEEecChhhhhh
Q 018040 289 NLIQHT-LGQHFS--DCTVITIAHRITSVID 316 (362)
Q Consensus 289 ~~i~~~-l~~~~~--~~tvi~itH~l~~~~~ 316 (362)
..+... ++.+.+ +.++|++||+++.+..
T Consensus 128 ~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 128 YAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 766665 444332 7899999999988765
No 446
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.26 E-value=7.2e-12 Score=139.38 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=69.3
Q ss_pred ccCCCCCChhHHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEE
Q 018040 247 TENGENWSMGQRQLVCLARVL----LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 247 ~~~g~~LSgGqrQRv~iAral----~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~v 322 (362)
...+..||||||||++||+++ +.+|+++||||||++||+.+...+.+.|....++.++|+|||++..+..||+++.
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHee
Confidence 346678999999999999998 4778999999999999999999999999887667899999999998877999875
Q ss_pred Ee
Q 018040 323 LS 324 (362)
Q Consensus 323 l~ 324 (362)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 54
No 447
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.26 E-value=2.7e-12 Score=127.35 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=56.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
.+|++||+++++||+++|+|||||||||||+ .|+..|++| +|.++|.++...+..++..- -+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~L-R~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETL-DEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHH-HHHHHhh
Confidence 4899999999999999999999999999999 788888888 79999999987654443211 1888864
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.20 E-value=1.1e-10 Score=99.97 Aligned_cols=129 Identities=19% Similarity=0.095 Sum_probs=77.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWE 224 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 224 (362)
++.|.|++|+||||+++.+++...+..|.+.+.+.+... ... .++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~------------------~~~~~~----------- 48 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EEL------------------TERLIG----------- 48 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHH------------------HHHHhh-----------
Confidence 368999999999999999999887766666553322110 000 000000
Q ss_pred HHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC----------CCHHHHHHHHHH
Q 018040 225 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS----------VDTATDNLIQHT 294 (362)
Q Consensus 225 ~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~----------LD~~~~~~i~~~ 294 (362)
....+.. ... ..........+.++.++++.+++...+|+++++||+++- .|....+.+.++
T Consensus 49 -~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 49 -ESLKGAL-------DNL-IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred -hhhcccc-------ccE-EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 0000000 000 001111112345566678899999999999999999954 444445666666
Q ss_pred HHhhc-CCceEEEEecChhhh
Q 018040 295 LGQHF-SDCTVITIAHRITSV 314 (362)
Q Consensus 295 l~~~~-~~~tvi~itH~l~~~ 314 (362)
+.... .+.|+|+++|.....
T Consensus 120 ~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 120 LERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHhcCCceEEEEEecCCcc
Confidence 65544 478999999976443
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.18 E-value=8e-11 Score=126.56 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=57.9
Q ss_pred cCCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhc-CCceEEEEecChhhhh----------hcCeEEEEeCCEEEEecCh
Q 018040 268 LKKSKVLVLDEATASV-DTATDNLIQHTLGQHF-SDCTVITIAHRITSVI----------DSDMVLLLSYGLIEEFDSP 334 (362)
Q Consensus 268 ~~~p~illLDEPts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~----------~~Dri~vl~~G~i~~~g~~ 334 (362)
..+|+++++|||+.+| |+...+.+.+.++... .+.+++++||+++.+. .||++++|.+|++.+.+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 6899999999998754 5789999999998774 4999999999998766643
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.18 E-value=1.5e-10 Score=101.15 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
.|.||-=.--+.+.+ ++.-|+|||||-|+|.|.-+-.+...|+++. .|.-+||+||.+-.+.. --+|+-++.+-+.+
T Consensus 130 ~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~~ 208 (233)
T COG3910 130 MSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIEE 208 (233)
T ss_pred hccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCccc
Confidence 499998777777776 4567999999999999999999999998875 57899999999877776 67889888876543
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.17 E-value=7.6e-11 Score=129.88 Aligned_cols=78 Identities=23% Similarity=0.167 Sum_probs=68.8
Q ss_pred cCCCCCChhHHHHHHHHHHhcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-c
Q 018040 248 ENGENWSMGQRQLVCLARVLLK--------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-S 317 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~iAral~~--------~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~ 317 (362)
....+|||||+|+++||+||+. +|++||+||||++||+.+...+++.|..+. .|+||++|||....... .
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 5678899999999999999995 899999999999999999999999998864 57999999997777666 6
Q ss_pred CeEEEEeC
Q 018040 318 DMVLLLSY 325 (362)
Q Consensus 318 Dri~vl~~ 325 (362)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 77777764
No 452
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.16 E-value=5.7e-11 Score=132.38 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=69.2
Q ss_pred CCCCCChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEe
Q 018040 249 NGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~----~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
++..||||||++++||++++ .+||++|||||+++||+.....+.+.|.....+.++|+|||+...+..||+++.+.
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVT 1150 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEE
Confidence 34589999999999999998 47899999999999999999999999988776788999999998887799998776
Q ss_pred C
Q 018040 325 Y 325 (362)
Q Consensus 325 ~ 325 (362)
.
T Consensus 1151 ~ 1151 (1164)
T TIGR02169 1151 M 1151 (1164)
T ss_pred E
Confidence 4
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.12 E-value=1.2e-10 Score=104.79 Aligned_cols=118 Identities=21% Similarity=0.217 Sum_probs=73.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIW 223 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 223 (362)
.+.|+||+||||||++++|++.+++. .|.|...+.++. .. .....+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~---~~~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FV---HESKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cc---ccCccceeeecc-----------------------
Confidence 68999999999999999999888754 567665443321 10 000111121110
Q ss_pred HHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCce
Q 018040 224 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCT 303 (362)
Q Consensus 224 ~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~t 303 (362)
++ .....++. +++++|.++|+++++|||. |.++... .++....|.+
T Consensus 56 -----vg-----------------~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~---~l~~a~~G~~ 101 (198)
T cd01131 56 -----VG-----------------LDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRL---ALTAAETGHL 101 (198)
T ss_pred -----cC-----------------CCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHH---HHHHHHcCCE
Confidence 00 00000111 4788999999999999996 6654333 3333346889
Q ss_pred EEEEecChhhhhhcCeEEEE
Q 018040 304 VITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 304 vi~itH~l~~~~~~Dri~vl 323 (362)
++.++|..+.....||++.|
T Consensus 102 v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 102 VMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred EEEEecCCcHHHHHhHHHhh
Confidence 99999998766556776554
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.09 E-value=4.7e-09 Score=86.41 Aligned_cols=117 Identities=34% Similarity=0.332 Sum_probs=80.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHH
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADE 220 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~ 220 (362)
++..+.|+||+|+||||+++.++..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 467899999999999999999999988654 4566655433221111100
Q ss_pred HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-------
Q 018040 221 EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH------- 293 (362)
Q Consensus 221 ~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~------- 293 (362)
............+++..+..+++|-..+|+++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 001111222357888888899999988899999999999999887766553
Q ss_pred HHHhhcCCceEEEEecC
Q 018040 294 TLGQHFSDCTVITIAHR 310 (362)
Q Consensus 294 ~l~~~~~~~tvi~itH~ 310 (362)
.......+..+|.++|.
T Consensus 109 ~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHhcCCCEEEEEeCC
Confidence 22223346788888884
No 455
>PRK02224 chromosome segregation protein; Provisional
Probab=99.07 E-value=2.5e-10 Score=124.25 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=66.7
Q ss_pred CCCCChhHHH------HHHHHHHhcCC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHhhcC-C-ceEEEEecChhhhh
Q 018040 250 GENWSMGQRQ------LVCLARVLLKK-----S-KVLVLDEATASVDTATDNLIQHTLGQHFS-D-CTVITIAHRITSVI 315 (362)
Q Consensus 250 g~~LSgGqrQ------Rv~iAral~~~-----p-~illLDEPts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~~~ 315 (362)
+..||||||| |+++|++++.+ | +++||||||++||+.....+.+.|..... + .+||+|||+...+.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 4579999999 99999999864 2 67999999999999999999998887643 4 48999999999998
Q ss_pred hcCeEEEEeCC
Q 018040 316 DSDMVLLLSYG 326 (362)
Q Consensus 316 ~~Dri~vl~~G 326 (362)
.||++++|...
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 89999999754
No 456
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.05 E-value=2.7e-09 Score=98.26 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=52.8
Q ss_pred CChhHHHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHHHHhh-cCCceEEEEecChhh-------hhh-cC
Q 018040 253 WSMGQRQLVCLARVLLK--KSKVLVLDEATASVD---TATDNLIQHTLGQH-FSDCTVITIAHRITS-------VID-SD 318 (362)
Q Consensus 253 LSgGqrQRv~iAral~~--~p~illLDEPts~LD---~~~~~~i~~~l~~~-~~~~tvi~itH~l~~-------~~~-~D 318 (362)
.|.++++.+..++.++. +|+++++||||+.+| ......+.+.++.. ..+.|+++++|.... +.. +|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 47788999999999997 899999999996544 44334444445443 357899999997654 334 67
Q ss_pred eEEEEeC
Q 018040 319 MVLLLSY 325 (362)
Q Consensus 319 ri~vl~~ 325 (362)
-++.|+.
T Consensus 181 gvI~L~~ 187 (234)
T PRK06067 181 VYLKLRA 187 (234)
T ss_pred EEEEEEe
Confidence 7777773
No 457
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.93 E-value=2.1e-09 Score=107.05 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=69.9
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC---CEeCCCCCHHH-
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID---GIDISSIGLHD- 188 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~---g~~i~~~~~~~- 188 (362)
.+.++.++++..|..+ ..+++.++ .|.+||+++|+|+||||||||+++|+++.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 4568999999999754 35889886 999999999999999999999999999999999999885 45554433222
Q ss_pred ---HhcCcEEEcCCC
Q 018040 189 ---LRSRLSIIPQDP 200 (362)
Q Consensus 189 ---~r~~i~~v~Q~~ 200 (362)
+++.|+||+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 235699999965
No 458
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.93 E-value=3e-09 Score=95.77 Aligned_cols=66 Identities=24% Similarity=0.391 Sum_probs=50.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHH
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVH 208 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 208 (362)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++..++.+++++.+ .++.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999985 77788 578877666666665532 355555566666
Q ss_pred hhc
Q 018040 209 NNL 211 (362)
Q Consensus 209 enl 211 (362)
+|.
T Consensus 78 ~~~ 80 (205)
T PRK00300 78 GNY 80 (205)
T ss_pred Ccc
Confidence 663
No 459
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.91 E-value=1.9e-10 Score=117.07 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=93.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHH--HcCCCCCccEEEECCEeCCCCCHHHHh---cCcEEEcCCCCCCcccHHhhcCcC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAGLIAIDGIDISSIGLHDLR---SRLSIIPQDPTMFEGSVHNNLDPL 214 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l--~gl~~p~~G~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~~l~~~tv~enl~~~ 214 (362)
+++|..+.|.|++|||||||..-. .|..+..+..+++.... ++++++ +.+|+-.++..- .+++...
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~-----~g~l~~~ 88 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVD-----EGKLFIL 88 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhh-----cCceEEE
Confidence 678999999999999999999765 46655455567775532 334443 335655543210 0111111
Q ss_pred CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH--HHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 018040 215 EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA--RVLLKKSKVLVLDEATASVDTATDNLIQ 292 (362)
Q Consensus 215 ~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA--ral~~~p~illLDEPts~LD~~~~~~i~ 292 (362)
...........++.+++.+.++..+ ..+|+|++|||.|+ .++...|+.. ...++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~ 147 (484)
T TIGR02655 89 DASPDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIF 147 (484)
T ss_pred ecCchhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHH
Confidence 0000000111222333333333322 33699999999999 6665655433 45667777
Q ss_pred HHHHhhc-CCceEEEEecChhh--------h-hh-cCeEEEEe
Q 018040 293 HTLGQHF-SDCTVITIAHRITS--------V-ID-SDMVLLLS 324 (362)
Q Consensus 293 ~~l~~~~-~~~tvi~itH~l~~--------~-~~-~Dri~vl~ 324 (362)
+.++.+. .++|+|+++|+.+. + +. ||.|+.|+
T Consensus 148 ~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 148 RLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 7777654 58999999998753 2 44 89999987
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.90 E-value=5.8e-09 Score=92.85 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=42.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI 179 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~ 179 (362)
..+-+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 344456678999999999999999999999999999999999999764
No 461
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=6.1e-09 Score=102.25 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=56.6
Q ss_pred CCChhHHHHHHHHHHhcC---------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh
Q 018040 252 NWSMGQRQLVCLARVLLK---------KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 315 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~---------~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~ 315 (362)
.+|.||+++++||.+|+. +|+|+|||||+|+||+..++.+.+.+... +.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 589999999999999999 99999999999999999999999999754 679999999987654
No 462
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.81 E-value=1.4e-08 Score=99.51 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceee-----------eeeEEEeCCcEEEE
Q 018040 80 RIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLR-----------GLTCTFLGGMKTGI 148 (362)
Q Consensus 80 ~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~-----------~isl~i~~Ge~~~i 148 (362)
...+.+|++++++.++... .++ ....+.+.|+||++.|++.. .+|+ |+++.|.+|++++|
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~------~~~--e~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~I 173 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNG------DDP--EKAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLI 173 (415)
T ss_pred ccccHhHHHHHhCCCccCC------CCc--cccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEE
Confidence 3457899999998765321 111 12345799999999998754 6897 99999999999999
Q ss_pred EcCCCccHHHHHHHHHcCCCC
Q 018040 149 VGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 149 vG~nGsGKSTLl~~l~gl~~p 169 (362)
+||+|+|||||++.|...+..
T Consensus 174 vG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 174 VAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred ECCCCCChhHHHHHHHHhhcc
Confidence 999999999999999998754
No 463
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.79 E-value=9.5e-08 Score=103.45 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=47.5
Q ss_pred HHHHhcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh
Q 018040 263 LARVLLKKSKVLVLDEATASV-DTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 316 (362)
Q Consensus 263 iAral~~~p~illLDEPts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 316 (362)
|+|++..+|+++++|||+.+| |+...+.+.+.++... .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 678889999999999999999 6899999999998754 57899999999987754
No 464
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.78 E-value=4.7e-08 Score=97.84 Aligned_cols=174 Identities=20% Similarity=0.179 Sum_probs=99.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HH-----HhcCcEEEcCCCCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HD-----LRSRLSIIPQDPTM 202 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~-----~r~~i~~v~Q~~~l 202 (362)
.+++++ +.+.+||+++|+|+||+|||||+++|+|..+|+.|.+...|..-.++.. +. +++.+.++.+...
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~- 229 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ- 229 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC-
Confidence 489999 9999999999999999999999999999999998877776654332210 00 1111222221110
Q ss_pred CcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCC-hhHHHHHHHHHHhcCCCCEEEEeCC--
Q 018040 203 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS-MGQRQLVCLARVLLKKSKVLVLDEA-- 279 (362)
Q Consensus 203 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LS-gGqrQRv~iAral~~~p~illLDEP-- 279 (362)
+. -+++..+.-.+-..+.... .|.+-.+- -.+|+ --|-|| .|+ +.+.||
T Consensus 230 ---~p-----------~~r~~~~~~a~t~AE~frd--~G~~Vll~--~DslTr~A~A~R-Eis---------l~~ge~P~ 281 (440)
T TIGR01026 230 ---SP-----------LLRLKGAYVATAIAEYFRD--QGKDVLLL--MDSVTRFAMAQR-EIG---------LAAGEPPA 281 (440)
T ss_pred ---CH-----------HHHHHHHHHHHHHHHHHHH--CCCCEEEE--EeChHHHHHHHH-HHH---------HhcCCCCc
Confidence 00 1111110000111111111 01110000 00011 112222 122 123454
Q ss_pred CCCCCHHHHHHHHHHHHhhc-CCc-------eEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 280 TASVDTATDNLIQHTLGQHF-SDC-------TVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~-~~~-------tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
+.|.|+.....+.+.+.+.. .++ ||++-+||+. .. +|++..+.+|+|+-+....+
T Consensus 282 ~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 282 TKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred ccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchhh
Confidence 56899999888888887654 345 8888999983 33 89999999999998876544
No 465
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.74 E-value=7.1e-09 Score=92.94 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=61.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEI 222 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 222 (362)
+++|+||||||||||.++|.+++ ..|.+.+-+.|--. ......+...+...+ +....+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 64 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERKNNNYD--------------HPDAFDFDLL 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhccCCCC--------------CCCcccHHHH
Confidence 48999999999999999999998 33444443333110 000000000000011 1111222333
Q ss_pred HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 223 ~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
.+.+..+...+ .+..+..++|.|++++..+ .+.+++++|+|+|+...++
T Consensus 65 ~~~l~~l~~~~-----------~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 65 ISHLQDLKNGK-----------SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHCCC-----------CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 33443332211 1222334568888776555 5788999999999999986
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.74 E-value=3.6e-08 Score=96.12 Aligned_cols=114 Identities=23% Similarity=0.187 Sum_probs=71.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA 218 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 218 (362)
..++..+.|.||+||||||+++++.+.++ +..|.|..-+.++.-. .....+++.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~e------------------ 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQRE------------------ 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEccc------------------
Confidence 35789999999999999999999999776 3467776544332100 000011111100
Q ss_pred HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 018040 219 DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 298 (362)
Q Consensus 219 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~ 298 (362)
.+ .... + ---++++||-++|+++++||+. |+++.....+ ..
T Consensus 177 ----------vg-----------------~~~~--~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa 217 (343)
T TIGR01420 177 ----------VG-----------------LDTL--S----FANALRAALREDPDVILIGEMR---DLETVELALT---AA 217 (343)
T ss_pred ----------cC-----------------CCCc--C----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HH
Confidence 00 0000 0 1224677888999999999997 8877665444 33
Q ss_pred cCCceEEEEecChhhh
Q 018040 299 FSDCTVITIAHRITSV 314 (362)
Q Consensus 299 ~~~~tvi~itH~l~~~ 314 (362)
..|.+++.+.|-.+..
T Consensus 218 ~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 218 ETGHLVFGTLHTNSAA 233 (343)
T ss_pred HcCCcEEEEEcCCCHH
Confidence 4588899999985544
No 467
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.72 E-value=8.9e-09 Score=102.40 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=60.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE---EECCEeCCCCCHHHH------hcCcEEEcCCCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI---AIDGIDISSIGLHDL------RSRLSIIPQDPT 201 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I---~i~g~~i~~~~~~~~------r~~i~~v~Q~~~ 201 (362)
.+++++ |++.+||+++|+|+||+|||||+++|+|+.+++.+.+ -.+|.++.+...+.+ |..+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 489999 9999999999999999999999999999999886433 334444433222222 446999999987
Q ss_pred CCc-ccHHhhcC
Q 018040 202 MFE-GSVHNNLD 212 (362)
Q Consensus 202 l~~-~tv~enl~ 212 (362)
.+. .++.++..
T Consensus 223 ~~~rl~a~e~a~ 234 (434)
T PRK07196 223 PLMRIKATELCH 234 (434)
T ss_pred hhhhHHHHHHHH
Confidence 664 36666653
No 468
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.69 E-value=3e-08 Score=91.73 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=35.3
Q ss_pred hcCCCCEEEEeCCCCC------CCHHHHHHHHHHHHhhc--CCceEEEEecCh
Q 018040 267 LLKKSKVLVLDEATAS------VDTATDNLIQHTLGQHF--SDCTVITIAHRI 311 (362)
Q Consensus 267 l~~~p~illLDEPts~------LD~~~~~~i~~~l~~~~--~~~tvi~itH~l 311 (362)
...+|+++|+| |+++ +|+.....+.+.+.+.. .++|+|+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7764 68888888888887653 478999999976
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.67 E-value=9.1e-09 Score=103.66 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=47.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
++++.++.+++|+++++|||||+||||++..|++.+.+..|.. +|+++++|+ |..++.|++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHH
Confidence 3445566677899999999999999999999999876666531 467888887 444566666
Q ss_pred C
Q 018040 212 D 212 (362)
Q Consensus 212 ~ 212 (362)
.
T Consensus 306 r 306 (484)
T PRK06995 306 R 306 (484)
T ss_pred H
Confidence 4
No 470
>PRK01889 GTPase RsgA; Reviewed
Probab=98.62 E-value=7.5e-08 Score=94.29 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=63.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcC
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 212 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~ 212 (362)
++.+.-.+++|++++|+|+||+|||||+++|+|...+..|+|.+++..... ...++.+.+++|+..+++.....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhhc
Confidence 555666788999999999999999999999999999999999998754322 12356799999999888776666665
Q ss_pred cC
Q 018040 213 PL 214 (362)
Q Consensus 213 ~~ 214 (362)
+.
T Consensus 262 l~ 263 (356)
T PRK01889 262 LW 263 (356)
T ss_pred cc
Confidence 43
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.60 E-value=5.3e-08 Score=86.58 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=45.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
|++++|+||||||||||+++|++...| .+.+.+..+........+..+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888888776655445566788888874
No 472
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.60 E-value=7.7e-08 Score=108.62 Aligned_cols=62 Identities=24% Similarity=0.238 Sum_probs=54.5
Q ss_pred cCCCCCChhHHHHHH----HHHH--------hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecCh
Q 018040 248 ENGENWSMGQRQLVC----LARV--------LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRI 311 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~----iAra--------l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 311 (362)
.....||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++||+||++
T Consensus 1243 ~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1243 HRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 345789999999996 5755 55799999999999999999999999999877 68999999986
No 473
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.2e-07 Score=103.64 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=67.8
Q ss_pred cCCCCCChhHHHHHHHHHHhc------CC--CCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-CceEEEEecChhhhhhcC
Q 018040 248 ENGENWSMGQRQLVCLARVLL------KK--SKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVIDSD 318 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~iAral~------~~--p~illLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~D 318 (362)
....+|||||+=.++||-+|+ .+ -++++|||||.+||+.+...+.+.|..... +.+|++|||+-+....+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 456789999998777766654 45 699999999999999999999999988754 699999999999999999
Q ss_pred eEEEEeCC
Q 018040 319 MVLLLSYG 326 (362)
Q Consensus 319 ri~vl~~G 326 (362)
.++.++..
T Consensus 891 ~~i~V~k~ 898 (908)
T COG0419 891 VRIRVKKD 898 (908)
T ss_pred eEEEEEec
Confidence 98888753
No 474
>PRK08149 ATP synthase SpaL; Validated
Probab=98.57 E-value=6.8e-08 Score=95.97 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=58.4
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEeCCCCCHHHHh----cCcEEEcCCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA---GLIAIDGIDISSIGLHDLR----SRLSIIPQDP 200 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---G~I~i~g~~i~~~~~~~~r----~~i~~v~Q~~ 200 (362)
.+++++ +++.+||+++|+|+||+|||||+++|++...++. |.|-.+|.++.++..+.++ +++++|+...
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 589999 9999999999999999999999999999999887 8899999888665444332 5678887654
No 475
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.54 E-value=1.1e-07 Score=93.11 Aligned_cols=88 Identities=26% Similarity=0.245 Sum_probs=57.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC--Ccc-EEEECCEeCCCCCHHHHhcCcEEEcCCCC-----CCcccHHhhcC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAG-LIAIDGIDISSIGLHDLRSRLSIIPQDPT-----MFEGSVHNNLD 212 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----l~~~tv~enl~ 212 (362)
++|..++|+|||||||||++++|++.+.+ ..+ .|.....++ ++..+.++...++++|... -|...++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999843 334 565544444 4555555555788888642 34556777765
Q ss_pred cCC------CC-CHHHHHHHHHHc
Q 018040 213 PLE------EY-ADEEIWEALDKC 229 (362)
Q Consensus 213 ~~~------~~-~~~~~~~~l~~~ 229 (362)
... +. +.+.+..+++.+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAA 234 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHH
Confidence 322 22 334455566663
No 476
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.51 E-value=6.7e-08 Score=88.58 Aligned_cols=58 Identities=10% Similarity=0.207 Sum_probs=38.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEeCCCCCHHHH---hcCcEEEcCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAGLIAIDGIDISSIGLHDL---RSRLSIIPQDP 200 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~~---r~~i~~v~Q~~ 200 (362)
-+++|+.+.|.|++|||||||...++ ....+..+.+++.... +.+++ .+.+++.+|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~----~~~~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE----SRESIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHhCCCHHHH
Confidence 47889999999999999999987654 2334455567776532 22332 23466666643
No 477
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.51 E-value=6.7e-07 Score=88.00 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=111.8
Q ss_pred EEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCC
Q 018040 121 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD 199 (362)
Q Consensus 121 l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 199 (362)
+++..++.. .+.+ +-|++| ++.|+|.+=-||||||++|- |.|+--.| ||... |--+
T Consensus 227 ve~~LP~~g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~--------------VVT~ 283 (448)
T PF09818_consen 227 VEIELPNGG--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREF--------------VVTD 283 (448)
T ss_pred EEEECCCCC--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceE--------------EEEC
Confidence 556665543 3444 468999 99999999999999999997 77764434 34221 1111
Q ss_pred CCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 200 PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 200 ~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
+... .+| . +--+.+..+.+..|+..+|.|.||.-. .-.+=||-.-|=..|..||=..+++||+||=
T Consensus 284 ~~av--kir--------A---EDGR~V~~vDISpFI~~LP~g~dT~~F-sT~~ASGSTSqAAnI~EAlE~Ga~~LLiDED 349 (448)
T PF09818_consen 284 PDAV--KIR--------A---EDGRSVEGVDISPFINNLPGGKDTTCF-STENASGSTSQAANIMEALEAGARLLLIDED 349 (448)
T ss_pred CCce--EEE--------e---cCCceEeCccchHHHhhCCCCCCCCcc-cccCCCchHHHHHHHHHHHHcCCCEEEEcCc
Confidence 1000 010 0 001234556788899999999987732 2345699999999999999999999999999
Q ss_pred CCCCCH-----HHHHHH----------HHHHHhh--cCCceEEEEecChh-hhhhcCeEEEEeCCEE
Q 018040 280 TASVDT-----ATDNLI----------QHTLGQH--FSDCTVITIAHRIT-SVIDSDMVLLLSYGLI 328 (362)
Q Consensus 280 ts~LD~-----~~~~~i----------~~~l~~~--~~~~tvi~itH~l~-~~~~~Dri~vl~~G~i 328 (362)
||+--- .-++.+ .+.++++ ..|.+.|+|+--.. .+..||+|++|++=+.
T Consensus 350 tsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 350 TSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred ccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 998743 223333 2223332 23655555555554 4555999999998764
No 478
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.50 E-value=2.3e-07 Score=103.82 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=36.8
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-CCCccEEEECCE
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV-EPTAGLIAIDGI 179 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-~p~~G~I~i~g~ 179 (362)
+++..+.+++++|+|++|+|||||++++.+-+ ...+|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 56778889999999999999999999996544 556899998763
No 479
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.50 E-value=2.1e-06 Score=92.76 Aligned_cols=49 Identities=24% Similarity=0.179 Sum_probs=41.5
Q ss_pred HhcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHhhc-CCceEEEEecChhhh
Q 018040 266 VLLKKSKVLVLDEATASVD-TATDNLIQHTLGQHF-SDCTVITIAHRITSV 314 (362)
Q Consensus 266 al~~~p~illLDEPts~LD-~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~ 314 (362)
.+..+|.++++|||...|| +...+.+.+.++... .+..++++||+++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4556899999999999999 788888988888754 578999999998764
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.48 E-value=1.2e-07 Score=83.70 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=40.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc-CcEEEcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS-RLSIIPQDP 200 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~-~i~~v~Q~~ 200 (362)
+||+++|+|+||||||||+++|++++.+ +.++|.++... ...|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence 5999999999999999999999999887 68899877432 22222 355666654
No 481
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.47 E-value=1.4e-07 Score=94.25 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=66.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECC---EeCCCCCHHHHh---cCcEEE-----cC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDG---IDISSIGLHDLR---SRLSII-----PQ 198 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g---~~i~~~~~~~~r---~~i~~v-----~Q 198 (362)
.+++++ |++.+||+++|+|+||+|||||+++|+|+.++ +.|.|.+.| .++.+...+.++ .+.+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 378887 99999999999999999999999999999854 446666644 555444333333 235666 89
Q ss_pred CCCC------CcccHHhhcCcCC-C-----CCHHHHHHHHHHcCC
Q 018040 199 DPTM------FEGSVHNNLDPLE-E-----YADEEIWEALDKCQL 231 (362)
Q Consensus 199 ~~~l------~~~tv~enl~~~~-~-----~~~~~~~~~l~~~~l 231 (362)
+|.. ...++.|.+.... . .+..+..++++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 8742 1125666654221 1 123456667777766
No 482
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.45 E-value=7.6e-07 Score=96.38 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHHhcC--CCCEEEEeCC---CCCCCHHH-HHHHHHHHHhhcCCceEEEEecChhhhhhcC
Q 018040 254 SMGQRQLVCLARVLLK--KSKVLVLDEA---TASVDTAT-DNLIQHTLGQHFSDCTVITIAHRITSVIDSD 318 (362)
Q Consensus 254 SgGqrQRv~iAral~~--~p~illLDEP---ts~LD~~~-~~~i~~~l~~~~~~~tvi~itH~l~~~~~~D 318 (362)
|-=+.....++++|-. ++.++||||| |+.+|... ...+.+.+.+. .+++++++||..+....++
T Consensus 668 STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 668 STFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEE 737 (854)
T ss_pred ccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhh
Confidence 5555666666666654 8999999999 88888543 22233333321 2589999999965544444
No 483
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.44 E-value=9.8e-08 Score=86.33 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=27.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
++|++++|+|+||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 484
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.42 E-value=4.7e-07 Score=79.68 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=43.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-----------CCEeCCCCCHHHH-----hcCcEEEcCCCCCCcc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-----------DGIDISSIGLHDL-----RSRLSIIPQDPTMFEG 205 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i-----------~g~~i~~~~~~~~-----r~~i~~v~Q~~~l~~~ 205 (362)
|++++|+||||||||||++.|++.+.+. |.+.+ +|.+....+.+++ .+.++.++|.+.++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 55544 5555544444443 2347777777655543
No 485
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.36 E-value=1.6e-06 Score=90.77 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=68.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--------EEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCc
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--------LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDP 213 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--------~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~ 213 (362)
..+.++|+||+|+|||||++++.++..+..| -|.++|..+. .+...+. .+ ++. .+.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~--------~~-llg-~~~~~--- 239 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT--------NP-LLG-SVHDP--- 239 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh--------HH-hcC-CccHH---
Confidence 4567999999999999999999999865444 4777776542 2221111 01 111 11110
Q ss_pred CCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 018040 214 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 293 (362)
Q Consensus 214 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~ 293 (362)
......+.+...++.+.... ....+||| +|+||| +..||+..+..+.+
T Consensus 240 ----~~~~a~~~l~~~gl~~~~~g-----------~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 240 ----IYQGARRDLAETGVPEPKTG-----------LVTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred ----HHHHHHHHHHHcCCCchhcC-----------chhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 01122334555555432222 22346888 999999 79999999999999
Q ss_pred HHHh
Q 018040 294 TLGQ 297 (362)
Q Consensus 294 ~l~~ 297 (362)
.+++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 9865
No 486
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.36 E-value=3.7e-06 Score=69.67 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc------CCceEEEEecChh
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF------SDCTVITIAHRIT 312 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~l~ 312 (362)
.+......+...++.++++||.-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4555566677788999999998765 5556667777776643 4678888888654
No 487
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.34 E-value=1.3e-06 Score=88.14 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=33.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE-EEECCEe
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL-IAIDGID 180 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~-I~i~g~~ 180 (362)
=+.+|+.+.|.|++|+|||||+..++.......+. +++.+++
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 48899999999999999999999887765544445 4666653
No 488
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.34 E-value=3.9e-07 Score=92.57 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=56.9
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 018040 118 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 182 (362)
++|++..|+.. .+++++++.+..|+.++++||||+|||||++.|.|+++|.+|++.+++..|.
T Consensus 187 ~~d~~~v~Gq~--~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE--QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH--HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45888888754 4899999999999999999999999999999999999999999999887663
No 489
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.33 E-value=5.1e-07 Score=89.91 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=55.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
.++.++++..+..+ ..+++++ +++.+||+++|+|+||+|||||+++|+|...++.|.+.+.|..
T Consensus 129 ~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47777888877543 3599999 9999999999999999999999999999999999988777754
No 490
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.33 E-value=1.1e-06 Score=78.26 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhh--hhh-cCeEEEEeCC
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS--VID-SDMVLLLSYG 326 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~-~Dri~vl~~G 326 (362)
.|+-+|..||.++..+|+.+..+| +-+||...+.+.+.+.+.. .+.+|++.+|.+.. +.. ||++++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 478899999999999999988887 7899999999999887764 34799999998854 444 9999999876
No 491
>PLN02796 D-glycerate 3-kinase
Probab=98.33 E-value=1.7e-07 Score=90.50 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=49.4
Q ss_pred ceeeeeeEEE---eCCcE-----EEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHHhc
Q 018040 131 LVLRGLTCTF---LGGMK-----TGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 131 ~vL~~isl~i---~~Ge~-----~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~ 191 (362)
.+++++++++ ++|+. +||+|++|||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 4778888887 67776 9999999999999999999999874 588999998876544444443
No 492
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.31 E-value=4e-07 Score=65.98 Aligned_cols=39 Identities=36% Similarity=0.444 Sum_probs=30.8
Q ss_pred eeeeeEEEeC-CcEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 018040 133 LRGLTCTFLG-GMKTGIVGRTGSGKSTLIQTLFRIVEPTA 171 (362)
Q Consensus 133 L~~isl~i~~-Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~ 171 (362)
+++-++++.+ |+.+.|.||||||||||+.++.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3445667775 57999999999999999999987666543
No 493
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.31 E-value=4.1e-07 Score=87.66 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=48.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC------HHHHhcCcEEEcCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG------LHDLRSRLSIIPQDPT 201 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~------~~~~r~~i~~v~Q~~~ 201 (362)
++|++++++|||||||||++..|++.+.+..|+|.+.+.|..... ....+..+.+++|...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~ 178 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEG 178 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCC
Confidence 568999999999999999999999999988899999887764321 1123456888888643
No 494
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.30 E-value=4.5e-06 Score=81.09 Aligned_cols=160 Identities=15% Similarity=0.205 Sum_probs=102.8
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE 215 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~ 215 (362)
-+-|++| ++.|+|+|=-|||||+.+|.. .+.---| ||... +|... .+-... .+|.
T Consensus 237 gmgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipG----DGRE~-------------vVTd~-~lakae-ae~g---- 292 (554)
T COG3044 237 GMGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPG----DGRER-------------VVTDV-KLAKAE-AEEG---- 292 (554)
T ss_pred ccCCCcc-eEEEecCCccchhHHHHHHHhcccccCCC----CCceE-------------EEehh-hhhhhh-cccc----
Confidence 3568899 999999999999999999963 3322112 23211 01000 000000 0111
Q ss_pred CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH-----
Q 018040 216 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL----- 290 (362)
Q Consensus 216 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~----- 290 (362)
..+....+..+++++|.+-+|.-.-.| .=||-+.|--.|=||+=...+++++||=+|+...-....
T Consensus 293 --------r~vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~ 363 (554)
T COG3044 293 --------RCVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKES 363 (554)
T ss_pred --------eeeeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHh
Confidence 112233456688888877666654443 349999999999999999999999999999875432221
Q ss_pred --------HHHHHHhhcC-CceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 291 --------IQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 291 --------i~~~l~~~~~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
+.+.+.+... +.++|.||--+..+.. +||+++|++-+-.
T Consensus 364 eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 364 EGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred cCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 2222333322 2688888888877665 9999999997754
No 495
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.29 E-value=9.1e-07 Score=85.23 Aligned_cols=49 Identities=33% Similarity=0.428 Sum_probs=45.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
.+++++ +.+.+||+++|+|+||+|||||+++|+|...|+.|.+..-|++
T Consensus 58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 589999 9999999999999999999999999999999998888776644
No 496
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=3.1e-06 Score=83.02 Aligned_cols=37 Identities=27% Similarity=0.252 Sum_probs=33.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++++.++.+++|++++++||||+||||++..|++.+
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3677788889999999999999999999999998865
No 497
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.28 E-value=7.8e-07 Score=81.76 Aligned_cols=32 Identities=34% Similarity=0.463 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 174 (362)
..++||.||||||||||++.|.+++++.+|.+
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 57999999999999999999999999999983
No 498
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.24 E-value=6.2e-06 Score=75.65 Aligned_cols=41 Identities=32% Similarity=0.338 Sum_probs=33.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC-CCC------CccEEEECCEe
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRI-VEP------TAGLIAIDGID 180 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p------~~G~I~i~g~~ 180 (362)
+++|+++.|.||+|||||||+..++.. ..| ..+.+++++.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 678999999999999999999888633 333 36788888765
No 499
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.23 E-value=1.2e-05 Score=86.97 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=47.2
Q ss_pred HhcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHhh-cCCceEEEEecChhhhh----------hcCeEEEEeCC
Q 018040 266 VLLKKSKVLVLDEATASVD-TATDNLIQHTLGQH-FSDCTVITIAHRITSVI----------DSDMVLLLSYG 326 (362)
Q Consensus 266 al~~~p~illLDEPts~LD-~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~----------~~Dri~vl~~G 326 (362)
.+-.+|+++++|||+..|| +...+.+.+.++.. +.+.+++++||+++.+. .|+-.++|.+.
T Consensus 631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 3445899999999999999 67788888888775 45789999999987543 35656666554
No 500
>PTZ00035 Rad51 protein; Provisional
Probab=98.20 E-value=6.2e-06 Score=80.21 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=52.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC-C-----CccEE-EECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-P-----TAGLI-AIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p-----~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
=|++|+++.|.|++|||||||+..++.... | ..|.+ +||+... .+++. +..++|.+.+...++.+|+
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er----i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER----IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH----HHHHHHHhCCChHhHhhce
Confidence 378899999999999999999998886554 3 45666 7887653 23332 3444565555555777887
Q ss_pred CcCCCCCHHH
Q 018040 212 DPLEEYADEE 221 (362)
Q Consensus 212 ~~~~~~~~~~ 221 (362)
.+...++.+.
T Consensus 188 ~~~~~~~~e~ 197 (337)
T PTZ00035 188 AYARAYNHEH 197 (337)
T ss_pred EEEccCCHHH
Confidence 6654444433
Done!