Query 018040
Match_columns 362
No_of_seqs 519 out of 2662
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:57:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2.8E-70 9.4E-75 608.2 32.6 303 48-354 1012-1318(1321)
2 4f4c_A Multidrug resistance pr 100.0 6.4E-67 2.2E-71 581.2 42.5 309 42-353 344-654 (1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 3.3E-66 1.1E-70 534.5 40.4 308 43-354 272-580 (587)
4 3b5x_A Lipid A export ATP-bind 100.0 1.6E-65 5.3E-70 529.3 42.8 338 9-352 239-579 (582)
5 3b60_A Lipid A export ATP-bind 100.0 1E-65 3.6E-70 530.6 40.5 339 8-352 238-579 (582)
6 4a82_A Cystic fibrosis transme 100.0 6.2E-66 2.1E-70 531.8 38.6 303 44-350 271-574 (578)
7 2yl4_A ATP-binding cassette SU 100.0 3E-65 1E-69 528.4 40.2 308 43-353 271-584 (595)
8 3nh6_A ATP-binding cassette SU 100.0 8.8E-67 3E-71 497.0 26.0 276 74-354 15-291 (306)
9 3qf4_B Uncharacterized ABC tra 100.0 2.6E-66 8.9E-71 536.5 29.9 307 42-354 285-592 (598)
10 3g5u_A MCG1178, multidrug resi 100.0 2.2E-61 7.4E-66 535.6 32.8 305 45-352 319-625 (1284)
11 2ff7_A Alpha-hemolysin translo 100.0 5.1E-60 1.7E-64 438.5 30.7 238 114-351 6-244 (247)
12 3g5u_A MCG1178, multidrug resi 100.0 1.9E-60 6.6E-65 528.1 31.8 308 45-355 962-1273(1284)
13 3gd7_A Fusion complex of cysti 100.0 1.6E-58 5.4E-63 453.3 26.2 238 109-347 13-250 (390)
14 2ghi_A Transport protein; mult 100.0 5.4E-58 1.9E-62 427.9 28.4 237 114-352 16-254 (260)
15 1mv5_A LMRA, multidrug resista 100.0 5.6E-59 1.9E-63 430.6 21.4 233 116-350 2-236 (243)
16 2ixe_A Antigen peptide transpo 100.0 5.7E-58 2E-62 430.2 26.7 238 114-352 15-257 (271)
17 2pze_A Cystic fibrosis transme 100.0 1.1E-55 3.9E-60 404.9 26.1 221 114-348 5-226 (229)
18 3tui_C Methionine import ATP-b 100.0 7.1E-56 2.4E-60 429.6 25.3 226 113-349 22-263 (366)
19 2cbz_A Multidrug resistance-as 100.0 9.5E-56 3.3E-60 407.4 23.7 224 115-352 3-229 (237)
20 3gfo_A Cobalt import ATP-bindi 100.0 1.6E-55 5.6E-60 413.9 22.3 214 115-340 7-234 (275)
21 3tif_A Uncharacterized ABC tra 100.0 5E-55 1.7E-59 402.1 22.0 213 116-338 2-233 (235)
22 3fvq_A Fe(3+) IONS import ATP- 100.0 3E-54 1E-58 417.8 26.9 221 115-348 4-237 (359)
23 2olj_A Amino acid ABC transpor 100.0 3E-54 1E-58 402.9 25.5 218 115-345 24-254 (263)
24 1ji0_A ABC transporter; ATP bi 100.0 3.6E-54 1.2E-58 397.7 25.4 214 115-340 6-229 (240)
25 3rlf_A Maltose/maltodextrin im 100.0 3.1E-54 1.1E-58 420.5 25.1 219 115-348 3-232 (381)
26 4g1u_C Hemin import ATP-bindin 100.0 3.7E-54 1.3E-58 403.2 24.2 214 114-340 10-238 (266)
27 1b0u_A Histidine permease; ABC 100.0 4.9E-54 1.7E-58 401.6 24.4 218 115-345 6-248 (262)
28 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-53 5.1E-58 396.9 25.9 214 113-340 13-236 (256)
29 2yyz_A Sugar ABC transporter, 100.0 2.9E-53 1E-57 411.7 26.9 217 115-346 3-230 (359)
30 1g6h_A High-affinity branched- 100.0 1.2E-53 4E-58 398.1 22.9 209 115-336 7-239 (257)
31 1z47_A CYSA, putative ABC-tran 100.0 2.6E-53 8.9E-58 411.3 24.7 217 114-345 13-241 (355)
32 2pcj_A ABC transporter, lipopr 100.0 1.9E-53 6.5E-58 388.9 21.7 206 115-333 4-222 (224)
33 1oxx_K GLCV, glucose, ABC tran 100.0 2.9E-53 1E-57 411.6 23.4 219 115-346 3-237 (353)
34 2it1_A 362AA long hypothetical 100.0 3.3E-53 1.1E-57 411.8 23.8 217 115-346 3-230 (362)
35 1v43_A Sugar-binding transport 100.0 8E-53 2.7E-57 410.5 25.7 217 115-346 11-238 (372)
36 2yz2_A Putative ABC transporte 100.0 8.9E-53 3E-57 394.0 24.9 213 115-341 2-229 (266)
37 3d31_A Sulfate/molybdate ABC t 100.0 9.3E-53 3.2E-57 406.9 25.3 214 116-345 2-223 (348)
38 2onk_A Molybdate/tungstate ABC 100.0 5.6E-53 1.9E-57 389.5 22.2 208 116-341 2-218 (240)
39 2ihy_A ABC transporter, ATP-bi 100.0 4.4E-53 1.5E-57 398.4 20.6 214 114-340 20-253 (279)
40 1g29_1 MALK, maltose transport 100.0 1.1E-52 3.8E-57 410.0 23.9 216 115-345 3-235 (372)
41 2qi9_C Vitamin B12 import ATP- 100.0 6.6E-52 2.3E-56 384.3 22.2 207 115-339 4-222 (249)
42 2d2e_A SUFC protein; ABC-ATPas 100.0 4.8E-52 1.6E-56 385.6 19.1 209 115-336 3-230 (250)
43 2bbs_A Cystic fibrosis transme 100.0 1.3E-51 4.3E-56 390.3 22.2 209 114-340 39-248 (290)
44 2zu0_C Probable ATP-dependent 100.0 4.5E-51 1.5E-55 382.6 22.1 213 114-338 19-253 (267)
45 2pjz_A Hypothetical protein ST 100.0 6E-51 2.1E-55 380.6 21.2 206 116-340 2-216 (263)
46 2nq2_C Hypothetical ABC transp 100.0 1.1E-50 3.7E-55 377.1 21.3 200 115-340 4-218 (253)
47 1sgw_A Putative ABC transporte 100.0 1.6E-49 5.5E-54 360.2 15.2 194 114-328 9-210 (214)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 9.7E-42 3.3E-46 348.2 16.3 199 114-339 286-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 1.4E-41 4.9E-46 350.7 17.7 199 114-339 356-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 8.7E-41 3E-45 340.7 16.9 199 114-338 268-476 (538)
51 2iw3_A Elongation factor 3A; a 100.0 9.1E-40 3.1E-44 349.2 18.1 197 115-333 671-981 (986)
52 3bk7_A ABC transporter ATP-bin 100.0 6.7E-40 2.3E-44 338.3 11.0 197 115-326 83-304 (607)
53 3j16_B RLI1P; ribosome recycli 100.0 3.3E-39 1.1E-43 332.7 15.1 197 119-340 350-560 (608)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 7.4E-40 2.5E-44 334.2 9.9 196 116-326 21-234 (538)
55 3ux8_A Excinuclease ABC, A sub 100.0 6.1E-39 2.1E-43 335.9 15.9 201 131-345 32-304 (670)
56 2iw3_A Elongation factor 3A; a 100.0 2.3E-37 8E-42 330.6 25.5 196 114-339 434-635 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.5E-38 5.2E-43 332.9 13.6 209 130-349 335-650 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 2.1E-37 7E-42 319.4 11.7 196 120-328 82-299 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-37 4.1E-42 317.5 7.1 192 120-327 4-214 (538)
60 3pih_A Uvrabc system protein A 100.0 1E-35 3.4E-40 317.5 18.6 203 131-343 598-906 (916)
61 4aby_A DNA repair protein RECN 100.0 3.9E-35 1.3E-39 289.8 15.3 200 132-332 50-381 (415)
62 2v9p_A Replication protein E1; 100.0 6.6E-40 2.2E-44 311.3 -21.7 216 65-350 56-273 (305)
63 2vf7_A UVRA2, excinuclease ABC 100.0 3.6E-34 1.2E-38 303.2 18.3 212 114-342 501-830 (842)
64 2r6f_A Excinuclease ABC subuni 100.0 3.8E-34 1.3E-38 303.9 17.0 212 114-342 628-945 (972)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 5.2E-38 1.8E-42 314.4 -14.5 190 115-339 118-338 (460)
66 2ygr_A Uvrabc system protein A 100.0 1.7E-33 5.7E-38 300.0 15.9 211 114-342 646-963 (993)
67 1e69_A Chromosome segregation 100.0 2.7E-30 9.2E-35 247.7 12.9 201 135-336 17-310 (322)
68 3b85_A Phosphate starvation-in 100.0 1.1E-32 3.9E-37 248.5 -5.6 157 131-327 14-171 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 1.2E-28 4.1E-33 240.2 18.0 84 247-330 274-364 (365)
70 1ye8_A Protein THEP1, hypothet 99.9 1.7E-29 5.8E-34 222.4 2.7 147 145-330 2-159 (178)
71 4gp7_A Metallophosphoesterase; 99.9 5.2E-29 1.8E-33 217.4 4.6 149 135-320 1-168 (171)
72 1tq4_A IIGP1, interferon-induc 99.9 9.6E-30 3.3E-34 250.8 -7.6 173 131-327 37-255 (413)
73 1z6g_A Guanylate kinase; struc 99.9 1.9E-29 6.5E-34 228.8 -11.6 169 131-325 11-193 (218)
74 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.2E-27 4E-32 230.2 -2.3 132 132-328 160-292 (330)
75 3b9q_A Chloroplast SRP recepto 99.9 2.2E-27 7.5E-32 225.6 -2.7 175 133-328 90-284 (302)
76 1znw_A Guanylate kinase, GMP k 99.9 2.6E-28 8.9E-33 219.1 -8.6 172 130-324 9-202 (207)
77 2dpy_A FLII, flagellum-specifi 99.9 3E-28 1E-32 242.4 -10.3 195 114-339 130-344 (438)
78 3sop_A Neuronal-specific septi 99.9 6.3E-27 2.2E-31 219.1 -2.8 145 145-314 4-153 (270)
79 2o5v_A DNA replication and rep 99.9 1.9E-24 6.6E-29 209.7 11.6 81 252-337 265-354 (359)
80 2og2_A Putative signal recogni 99.9 3.4E-26 1.2E-30 221.8 -2.1 173 134-328 148-341 (359)
81 3aez_A Pantothenate kinase; tr 99.9 8.2E-27 2.8E-31 222.6 -9.4 175 113-327 41-246 (312)
82 2obl_A ESCN; ATPase, hydrolase 99.9 1.5E-25 5E-30 216.8 -3.3 195 114-338 44-254 (347)
83 4ad8_A DNA repair protein RECN 99.9 9.9E-24 3.4E-28 214.4 9.1 77 250-326 394-473 (517)
84 2o8b_B DNA mismatch repair pro 99.9 9E-24 3.1E-28 228.8 8.0 170 114-334 749-937 (1022)
85 3qkt_A DNA double-strand break 99.9 2.4E-22 8.4E-27 193.7 16.9 78 247-324 243-327 (339)
86 1tf7_A KAIC; homohexamer, hexa 99.9 2.1E-25 7.2E-30 227.2 -6.1 166 130-325 25-209 (525)
87 3pih_A Uvrabc system protein A 99.9 2.6E-23 8.9E-28 222.0 4.3 170 159-342 384-563 (916)
88 1cr0_A DNA primase/helicase; R 99.9 3.1E-23 1.1E-27 195.7 3.8 181 131-328 23-237 (296)
89 2eyu_A Twitching motility prot 99.9 1.1E-23 3.9E-28 196.0 0.6 130 131-323 15-145 (261)
90 1tf7_A KAIC; homohexamer, hexa 99.9 3.8E-22 1.3E-26 203.1 10.2 153 137-327 275-444 (525)
91 2i3b_A HCR-ntpase, human cance 99.9 1.7E-24 5.7E-29 192.2 -6.3 159 143-332 1-169 (189)
92 1w1w_A Structural maintenance 99.8 1.8E-21 6.2E-26 193.4 11.4 73 252-324 333-410 (430)
93 2ehv_A Hypothetical protein PH 99.8 1.1E-22 3.7E-27 186.0 1.8 180 116-324 7-206 (251)
94 2jeo_A Uridine-cytidine kinase 99.8 6.8E-23 2.3E-27 188.5 -1.2 165 130-339 12-187 (245)
95 3thx_A DNA mismatch repair pro 99.8 2.1E-21 7.1E-26 208.1 8.0 165 115-337 631-811 (934)
96 2vf7_A UVRA2, excinuclease ABC 99.8 1.3E-21 4.3E-26 207.5 6.0 180 151-344 270-480 (842)
97 4a74_A DNA repair and recombin 99.8 1E-21 3.5E-26 177.3 4.3 147 139-326 21-200 (231)
98 1ewq_A DNA mismatch repair pro 99.8 1.3E-21 4.5E-26 206.1 4.2 145 114-317 549-704 (765)
99 2r6f_A Excinuclease ABC subuni 99.8 5E-21 1.7E-25 203.7 7.9 96 246-341 498-602 (972)
100 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.6E-20 8.8E-25 158.7 10.6 81 247-327 52-141 (148)
101 3szr_A Interferon-induced GTP- 99.8 3.9E-23 1.3E-27 213.7 -9.3 189 115-337 10-235 (608)
102 2f1r_A Molybdopterin-guanine d 99.8 7.5E-23 2.6E-27 178.7 -8.0 111 144-274 3-125 (171)
103 2qnr_A Septin-2, protein NEDD5 99.8 1.4E-21 4.7E-26 185.5 -0.1 161 119-312 2-168 (301)
104 1pzn_A RAD51, DNA repair and r 99.8 4.7E-21 1.6E-25 185.5 2.8 165 132-337 119-313 (349)
105 1pui_A ENGB, probable GTP-bind 99.8 5.5E-22 1.9E-26 176.6 -3.9 170 115-299 3-197 (210)
106 2ewv_A Twitching motility prot 99.8 1.8E-23 6.3E-28 204.1 -15.1 175 131-313 126-353 (372)
107 2ygr_A Uvrabc system protein A 99.8 1.4E-19 4.7E-24 193.3 12.9 98 246-343 515-621 (993)
108 3jvv_A Twitching mobility prot 99.8 8.2E-21 2.8E-25 184.1 2.7 146 119-325 92-245 (356)
109 3asz_A Uridine kinase; cytidin 99.8 9.7E-23 3.3E-27 182.5 -10.6 139 140-311 3-161 (211)
110 3thx_B DNA mismatch repair pro 99.8 2.1E-20 7.2E-25 199.9 5.1 157 115-319 640-804 (918)
111 1lw7_A Transcriptional regulat 99.8 2.9E-23 9.8E-28 202.1 -16.4 175 132-339 157-355 (365)
112 1rj9_A FTSY, signal recognitio 99.8 2.6E-20 8.9E-25 176.9 4.0 163 142-327 101-284 (304)
113 2w0m_A SSO2452; RECA, SSPF, un 99.8 2.4E-20 8.4E-25 168.0 2.1 164 131-326 10-192 (235)
114 2qag_C Septin-7; cell cycle, c 99.8 2.4E-20 8.2E-25 184.2 0.4 166 114-314 10-180 (418)
115 1lvg_A Guanylate kinase, GMP k 99.8 2.7E-22 9.4E-27 178.9 -12.8 158 141-325 2-173 (198)
116 1s96_A Guanylate kinase, GMP k 99.7 1.5E-19 5E-24 163.9 2.0 144 137-339 10-160 (219)
117 3kta_B Chromosome segregation 99.7 4.6E-18 1.6E-22 148.5 10.2 79 249-327 61-145 (173)
118 1wb9_A DNA mismatch repair pro 99.7 4.1E-19 1.4E-23 188.1 2.7 150 130-330 595-749 (800)
119 2gza_A Type IV secretion syste 99.7 3.5E-20 1.2E-24 180.1 -5.5 153 117-327 137-303 (361)
120 2qag_B Septin-6, protein NEDD5 99.7 8.2E-19 2.8E-23 173.0 0.7 178 115-310 16-218 (427)
121 1nlf_A Regulatory protein REPA 99.7 1E-17 3.6E-22 156.6 6.2 151 139-314 26-184 (279)
122 2cvh_A DNA repair and recombin 99.7 2E-16 6.8E-21 141.5 13.4 148 132-326 8-185 (220)
123 1zp6_A Hypothetical protein AT 99.7 7.9E-19 2.7E-23 154.2 -2.6 150 139-309 5-158 (191)
124 1nij_A Hypothetical protein YJ 99.7 1.7E-18 5.8E-23 165.4 -2.1 152 144-312 5-190 (318)
125 1n0w_A DNA repair protein RAD5 99.6 1.6E-16 5.3E-21 144.3 6.9 146 139-326 20-209 (243)
126 2bdt_A BH3686; alpha-beta prot 99.6 4.9E-20 1.7E-24 162.2 -17.2 169 143-337 2-182 (189)
127 2qm8_A GTPase/ATPase; G protei 99.6 3.6E-19 1.2E-23 171.5 -14.4 176 117-298 31-258 (337)
128 1odf_A YGR205W, hypothetical 3 99.6 3.5E-17 1.2E-21 154.3 -2.7 121 142-287 30-169 (290)
129 2yhs_A FTSY, cell division pro 99.6 5.6E-17 1.9E-21 162.1 -3.7 156 133-309 283-447 (503)
130 1sxj_E Activator 1 40 kDa subu 99.6 4.4E-15 1.5E-19 142.6 9.1 137 146-314 39-177 (354)
131 3c8u_A Fructokinase; YP_612366 99.6 2.9E-17 1E-21 147.0 -6.1 154 140-339 19-181 (208)
132 3auy_A DNA double-strand break 99.6 7.4E-15 2.5E-19 143.0 10.3 75 250-324 278-359 (371)
133 2bbw_A Adenylate kinase 4, AK4 99.6 4.7E-17 1.6E-21 149.3 -5.8 147 142-299 26-197 (246)
134 1htw_A HI0065; nucleotide-bind 99.6 8.5E-17 2.9E-21 138.4 -3.8 86 119-212 11-96 (158)
135 3e70_C DPA, signal recognition 99.5 1.2E-16 4E-21 153.2 -3.7 163 140-329 126-307 (328)
136 3lda_A DNA repair protein RAD5 99.5 6.2E-15 2.1E-19 144.8 7.6 147 139-327 174-364 (400)
137 2rcn_A Probable GTPase ENGC; Y 99.5 2E-15 6.7E-20 145.9 2.4 121 132-267 205-328 (358)
138 1p9r_A General secretion pathw 99.5 1.3E-17 4.4E-22 164.8 -13.8 127 132-275 158-314 (418)
139 2oap_1 GSPE-2, type II secreti 99.5 1.9E-17 6.6E-22 167.5 -13.4 173 131-318 248-458 (511)
140 3ec2_A DNA replication protein 99.5 3.4E-15 1.2E-19 130.1 0.5 111 137-312 32-144 (180)
141 2yv5_A YJEQ protein; hydrolase 99.5 1.1E-14 3.8E-19 138.0 3.7 113 139-265 161-300 (302)
142 2kjq_A DNAA-related protein; s 99.5 2.9E-14 1E-18 121.2 5.8 91 132-310 30-124 (149)
143 2x8a_A Nuclear valosin-contain 99.5 2E-16 6.9E-21 147.9 -9.6 144 131-296 34-191 (274)
144 1udx_A The GTP-binding protein 99.4 5.1E-14 1.8E-18 138.9 3.1 153 133-309 147-306 (416)
145 1u0l_A Probable GTPase ENGC; p 99.4 1.7E-13 5.9E-18 129.6 6.1 103 139-242 165-292 (301)
146 1sq5_A Pantothenate kinase; P- 99.4 1.7E-15 5.9E-20 143.9 -10.4 139 114-285 36-199 (308)
147 3lnc_A Guanylate kinase, GMP k 99.3 7.4E-16 2.5E-20 139.9 -14.4 178 132-327 16-212 (231)
148 3tr0_A Guanylate kinase, GMP k 99.3 5.1E-13 1.8E-17 118.1 1.6 72 137-212 1-73 (205)
149 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 3.5E-15 1.2E-19 146.0 -14.2 167 139-334 16-208 (392)
150 1t9h_A YLOQ, probable GTPase E 99.3 5.2E-13 1.8E-17 126.5 1.0 96 138-235 168-289 (307)
151 1ls1_A Signal recognition part 99.2 1.4E-11 4.8E-16 116.2 9.5 143 116-309 77-220 (295)
152 2px0_A Flagellar biosynthesis 99.2 5E-12 1.7E-16 119.4 6.2 139 141-331 103-247 (296)
153 3euj_A Chromosome partition pr 99.2 3.1E-12 1.1E-16 128.0 4.5 53 132-185 19-71 (483)
154 1vma_A Cell division protein F 99.2 3.3E-12 1.1E-16 121.1 4.1 98 136-281 97-197 (306)
155 1oix_A RAS-related protein RAB 99.2 7.8E-13 2.7E-17 116.1 -2.2 139 145-297 31-188 (191)
156 1in4_A RUVB, holliday junction 99.2 1.6E-15 5.3E-20 145.7 -22.6 170 116-316 19-207 (334)
157 2dr3_A UPF0273 protein PH0284; 99.2 2.4E-10 8.1E-15 103.4 12.9 166 132-325 11-196 (247)
158 1qhl_A Protein (cell division 99.1 1.3E-12 4.3E-17 118.8 -4.5 75 115-199 9-91 (227)
159 1iy2_A ATP-dependent metallopr 99.1 4.6E-14 1.6E-18 131.6 -14.5 137 116-280 50-195 (278)
160 2zr9_A Protein RECA, recombina 99.1 1.6E-10 5.4E-15 111.5 8.2 142 139-332 57-236 (349)
161 2ius_A DNA translocase FTSK; n 99.1 5.7E-12 2E-16 126.9 -2.5 161 135-312 159-343 (512)
162 1ixz_A ATP-dependent metallopr 99.1 9.5E-14 3.3E-18 127.5 -14.9 138 116-281 26-172 (254)
163 4e22_A Cytidylate kinase; P-lo 99.0 2.6E-11 8.8E-16 111.6 0.6 91 141-237 25-133 (252)
164 1cke_A CK, MSSA, protein (cyti 99.0 1.7E-12 5.9E-17 116.6 -7.8 127 143-280 5-150 (227)
165 3a00_A Guanylate kinase, GMP k 99.0 5.8E-11 2E-15 104.0 0.5 26 143-168 1-26 (186)
166 2dy1_A Elongation factor G; tr 99.0 3.8E-10 1.3E-14 117.7 6.1 132 137-313 3-138 (665)
167 2r6a_A DNAB helicase, replicat 98.9 4E-10 1.4E-14 112.4 5.1 174 131-328 191-401 (454)
168 3k1j_A LON protease, ATP-depen 98.9 2.7E-11 9.3E-16 125.0 -3.6 155 131-297 48-227 (604)
169 2f9l_A RAB11B, member RAS onco 98.9 3E-10 1E-14 99.9 2.4 35 261-297 130-164 (199)
170 1svm_A Large T antigen; AAA+ f 98.9 4.2E-12 1.4E-16 123.6 -12.8 136 131-281 157-312 (377)
171 3ney_A 55 kDa erythrocyte memb 98.7 1.9E-09 6.5E-14 95.6 0.9 83 138-228 14-109 (197)
172 1kgd_A CASK, peripheral plasma 98.7 1.1E-09 3.8E-14 95.3 -0.8 35 142-176 4-39 (180)
173 2j41_A Guanylate kinase; GMP, 98.7 5.6E-09 1.9E-13 91.9 3.6 63 138-203 1-63 (207)
174 4eun_A Thermoresistant glucoki 98.7 9.4E-10 3.2E-14 97.2 -1.7 61 137-202 23-83 (200)
175 2ce7_A Cell division protein F 98.7 1.5E-08 5.2E-13 101.4 6.5 60 255-314 93-167 (476)
176 3hr8_A Protein RECA; alpha and 98.7 7.3E-09 2.5E-13 100.0 3.8 59 139-200 57-116 (356)
177 2dhr_A FTSH; AAA+ protein, hex 98.7 2.6E-10 8.8E-15 114.9 -7.0 138 117-282 42-188 (499)
178 3nwj_A ATSK2; P loop, shikimat 98.7 1.2E-09 4E-14 100.6 -2.2 52 115-167 17-72 (250)
179 2qtf_A Protein HFLX, GTP-bindi 98.6 7.8E-09 2.7E-13 100.2 2.0 137 145-298 181-351 (364)
180 3kta_A Chromosome segregation 98.6 4.1E-09 1.4E-13 91.3 -0.1 99 134-233 18-137 (182)
181 1zu4_A FTSY; GTPase, signal re 98.6 5.9E-09 2E-13 99.3 0.2 69 133-201 95-173 (320)
182 1jjv_A Dephospho-COA kinase; P 98.6 1.9E-08 6.4E-13 88.9 3.2 126 145-325 4-132 (206)
183 2xau_A PRE-mRNA-splicing facto 98.6 1.2E-08 4.2E-13 108.0 2.3 67 252-318 190-260 (773)
184 2e87_A Hypothetical protein PH 98.6 1.5E-07 5E-12 90.8 9.0 61 251-312 230-293 (357)
185 3uie_A Adenylyl-sulfate kinase 98.6 1.8E-09 6.2E-14 95.4 -4.2 59 120-181 4-64 (200)
186 2qt1_A Nicotinamide riboside k 98.5 2.6E-08 9.1E-13 88.1 1.3 45 138-205 16-60 (207)
187 3t34_A Dynamin-related protein 98.4 2.8E-07 9.5E-12 88.8 7.0 45 131-178 25-71 (360)
188 3vaa_A Shikimate kinase, SK; s 98.4 1.1E-07 3.7E-12 83.8 3.5 38 130-167 12-49 (199)
189 3tqc_A Pantothenate kinase; bi 98.4 3.5E-09 1.2E-13 100.8 -6.9 45 132-176 75-127 (321)
190 3tau_A Guanylate kinase, GMP k 98.4 4.4E-08 1.5E-12 87.1 0.4 34 141-174 6-40 (208)
191 4a1f_A DNAB helicase, replicat 98.4 8.9E-07 3E-11 84.7 8.6 105 132-284 35-141 (338)
192 1rz3_A Hypothetical protein rb 98.3 1.2E-07 4.2E-12 83.6 1.2 46 140-185 19-64 (201)
193 2vp4_A Deoxynucleoside kinase; 98.3 1.8E-07 6.1E-12 84.5 2.2 62 139-204 16-87 (230)
194 2z43_A DNA repair and recombin 98.3 4.7E-07 1.6E-11 86.0 4.8 28 139-166 103-130 (324)
195 3kl4_A SRP54, signal recogniti 98.3 2.5E-06 8.5E-11 84.2 9.6 40 142-181 96-135 (433)
196 1knq_A Gluconate kinase; ALFA/ 98.2 4.7E-07 1.6E-11 77.6 1.8 38 141-182 6-43 (175)
197 2ffh_A Protein (FFH); SRP54, s 98.1 1.5E-06 5.1E-11 85.7 5.0 61 117-183 78-138 (425)
198 3cr8_A Sulfate adenylyltranfer 98.1 4.6E-07 1.6E-11 92.3 1.3 61 139-199 365-437 (552)
199 1ega_A Protein (GTP-binding pr 98.1 6.3E-07 2.2E-11 84.4 2.1 147 142-316 7-164 (301)
200 1fnn_A CDC6P, cell division co 98.1 9.2E-06 3.1E-10 77.9 10.3 44 269-313 124-171 (389)
201 3ice_A Transcription terminati 98.1 3.7E-07 1.3E-11 88.4 -0.9 54 113-167 131-198 (422)
202 1v5w_A DMC1, meiotic recombina 98.1 1.9E-06 6.6E-11 82.5 4.1 28 139-166 118-145 (343)
203 3lxx_A GTPase IMAP family memb 98.0 3.3E-05 1.1E-09 69.5 11.1 28 145-172 31-58 (239)
204 2z4s_A Chromosomal replication 98.0 1.3E-06 4.5E-11 86.5 1.8 67 269-335 193-264 (440)
205 3b9p_A CG5977-PA, isoform A; A 98.0 2.7E-05 9.2E-10 72.2 10.4 71 254-324 97-187 (297)
206 3m6a_A ATP-dependent protease 98.0 7.1E-07 2.4E-11 90.9 -0.8 49 131-180 97-145 (543)
207 1sxj_C Activator 1 40 kDa subu 98.0 6.7E-07 2.3E-11 85.3 -1.3 42 131-172 32-75 (340)
208 1mky_A Probable GTP-binding pr 97.9 4.4E-06 1.5E-10 82.6 4.1 61 144-204 181-253 (439)
209 2p67_A LAO/AO transport system 97.9 6.1E-07 2.1E-11 86.0 -2.1 52 131-182 44-95 (341)
210 1kag_A SKI, shikimate kinase I 97.9 3.8E-06 1.3E-10 71.5 2.8 33 142-178 3-35 (173)
211 1ypw_A Transitional endoplasmi 97.9 1.1E-06 3.9E-11 93.3 -1.2 32 138-169 233-264 (806)
212 2pez_A Bifunctional 3'-phospho 97.9 1.9E-06 6.4E-11 74.2 0.3 40 141-181 3-44 (179)
213 2www_A Methylmalonic aciduria 97.9 2.7E-06 9.2E-11 81.8 1.2 41 142-182 73-113 (349)
214 3bh0_A DNAB-like replicative h 97.9 3.4E-05 1.2E-09 72.9 8.4 34 132-165 57-90 (315)
215 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 8.7E-06 3E-10 68.5 3.4 31 134-165 15-45 (149)
216 4eaq_A DTMP kinase, thymidylat 97.8 4.7E-06 1.6E-10 75.3 1.4 44 133-177 13-59 (229)
217 2qby_A CDC6 homolog 1, cell di 97.8 5.8E-06 2E-10 78.9 2.0 30 141-170 43-72 (386)
218 1f6b_A SAR1; gtpases, N-termin 97.8 3.8E-06 1.3E-10 73.5 0.1 56 122-179 6-69 (198)
219 1m2o_B GTP-binding protein SAR 97.7 2.2E-05 7.5E-10 68.0 4.4 33 132-165 13-45 (190)
220 2gj8_A MNME, tRNA modification 97.7 2.5E-05 8.6E-10 66.6 4.5 27 141-167 2-28 (172)
221 1m7g_A Adenylylsulfate kinase; 97.7 6.4E-06 2.2E-10 72.9 0.6 43 138-180 20-64 (211)
222 3cf0_A Transitional endoplasmi 97.7 0.00016 5.3E-09 67.7 9.7 30 139-168 45-74 (301)
223 1u94_A RECA protein, recombina 97.7 0.00019 6.5E-09 69.0 10.3 28 140-167 60-87 (356)
224 2qor_A Guanylate kinase; phosp 97.6 5.9E-06 2E-10 72.8 -0.7 30 139-168 8-37 (204)
225 2w58_A DNAI, primosome compone 97.6 2.3E-05 7.8E-10 68.5 2.5 26 144-169 55-80 (202)
226 3r20_A Cytidylate kinase; stru 97.6 1.6E-05 5.4E-10 72.1 1.4 55 143-197 9-75 (233)
227 3llm_A ATP-dependent RNA helic 97.6 1.3E-05 4.5E-10 72.2 0.7 24 141-164 74-97 (235)
228 3qks_A DNA double-strand break 97.5 5.2E-05 1.8E-09 67.0 3.4 30 134-164 15-44 (203)
229 1l8q_A Chromosomal replication 97.5 8.5E-05 2.9E-09 69.9 5.1 27 143-169 37-63 (324)
230 1j8m_F SRP54, signal recogniti 97.5 8.7E-06 3E-10 76.5 -1.8 61 118-183 77-138 (297)
231 3h4m_A Proteasome-activating n 97.5 0.0002 6.8E-09 65.8 7.3 27 141-167 49-75 (285)
232 2wji_A Ferrous iron transport 97.5 0.00012 4E-09 61.7 5.2 24 145-168 5-28 (165)
233 2yvu_A Probable adenylyl-sulfa 97.5 3.3E-05 1.1E-09 66.7 1.8 39 140-178 10-49 (186)
234 4fcw_A Chaperone protein CLPB; 97.5 0.00014 4.7E-09 67.6 6.2 32 143-174 47-78 (311)
235 1sxj_D Activator 1 41 kDa subu 97.5 3.5E-05 1.2E-09 72.9 2.1 44 270-314 133-176 (353)
236 1njg_A DNA polymerase III subu 97.5 8.5E-05 2.9E-09 65.3 4.4 45 269-314 125-169 (250)
237 1y63_A LMAJ004144AAA protein; 97.4 5.3E-05 1.8E-09 65.5 2.8 32 135-166 2-33 (184)
238 2wjg_A FEOB, ferrous iron tran 97.4 7.8E-05 2.7E-09 63.7 3.7 22 145-166 9-30 (188)
239 2qag_A Septin-2, protein NEDD5 97.4 8.4E-06 2.9E-10 78.6 -2.8 57 114-178 16-72 (361)
240 2ohf_A Protein OLA1, GTP-bindi 97.4 6.5E-05 2.2E-09 73.2 3.3 41 139-179 18-69 (396)
241 2i1q_A DNA repair and recombin 97.4 0.00044 1.5E-08 65.1 8.7 27 139-165 94-120 (322)
242 3bos_A Putative DNA replicatio 97.4 5.3E-05 1.8E-09 67.2 1.9 27 142-168 51-77 (242)
243 4dcu_A GTP-binding protein ENG 97.3 0.00023 7.7E-09 70.6 6.3 56 256-314 88-144 (456)
244 3lxw_A GTPase IMAP family memb 97.3 0.00036 1.2E-08 63.3 7.0 24 145-168 23-46 (247)
245 2if2_A Dephospho-COA kinase; a 97.3 9.9E-05 3.4E-09 64.5 3.0 21 145-165 3-23 (204)
246 1np6_A Molybdopterin-guanine d 97.3 8.7E-05 3E-09 64.1 2.3 38 143-180 6-46 (174)
247 3n70_A Transport activator; si 97.3 0.00099 3.4E-08 55.1 8.6 40 270-310 76-115 (145)
248 2ewv_A Twitching motility prot 97.3 9.3E-05 3.2E-09 71.6 2.4 55 260-320 199-253 (372)
249 2zej_A Dardarin, leucine-rich 97.2 0.00014 4.9E-09 62.2 3.3 26 145-170 4-29 (184)
250 3t61_A Gluconokinase; PSI-biol 97.2 5.7E-05 1.9E-09 66.1 0.7 34 143-180 18-51 (202)
251 2p5t_B PEZT; postsegregational 97.1 0.00017 6E-09 65.6 2.6 39 141-181 30-68 (253)
252 2q6t_A DNAB replication FORK h 97.1 0.0014 4.8E-08 64.7 9.3 36 132-167 189-224 (444)
253 1lv7_A FTSH; alpha/beta domain 97.1 0.00018 6.1E-09 65.3 2.6 43 134-180 38-80 (257)
254 4ag6_A VIRB4 ATPase, type IV s 97.1 0.00018 6.1E-09 69.7 2.7 57 270-326 262-335 (392)
255 3cm0_A Adenylate kinase; ATP-b 97.1 0.00024 8.2E-09 60.9 3.1 26 141-166 2-27 (186)
256 2ga8_A Hypothetical 39.9 kDa p 97.0 7.1E-05 2.4E-09 71.8 -1.3 36 132-167 11-48 (359)
257 3ihw_A Centg3; RAS, centaurin, 97.0 0.00078 2.7E-08 57.8 5.3 35 145-179 22-65 (184)
258 1qhx_A CPT, protein (chloramph 97.0 0.00045 1.5E-08 58.7 3.7 26 143-168 3-28 (178)
259 1q3t_A Cytidylate kinase; nucl 97.0 0.00038 1.3E-08 62.5 3.4 27 140-166 13-39 (236)
260 2v1u_A Cell division control p 96.9 0.00076 2.6E-08 64.1 5.5 28 141-168 42-69 (387)
261 2eyu_A Twitching motility prot 96.9 3.6E-07 1.2E-11 84.4 -17.2 73 238-312 158-241 (261)
262 3dm5_A SRP54, signal recogniti 96.9 0.005 1.7E-07 60.7 11.4 35 142-176 99-133 (443)
263 3kb2_A SPBC2 prophage-derived 96.9 0.00048 1.6E-08 57.9 3.3 23 145-167 3-25 (173)
264 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0039 1.3E-07 56.1 9.6 25 143-167 39-63 (262)
265 3auy_A DNA double-strand break 96.9 0.00056 1.9E-08 65.9 4.2 31 133-164 16-46 (371)
266 1jal_A YCHF protein; nucleotid 96.9 0.00075 2.6E-08 65.0 5.0 36 143-178 2-48 (363)
267 3syl_A Protein CBBX; photosynt 96.9 0.0046 1.6E-07 57.1 10.2 25 143-167 67-91 (309)
268 1xp8_A RECA protein, recombina 96.9 0.0044 1.5E-07 59.7 10.1 26 140-165 71-96 (366)
269 1gtv_A TMK, thymidylate kinase 96.9 0.00015 5.1E-09 63.6 -0.3 26 145-170 2-27 (214)
270 3d8b_A Fidgetin-like protein 1 96.8 0.0038 1.3E-07 59.6 9.5 27 141-167 115-141 (357)
271 2jaq_A Deoxyguanosine kinase; 96.8 0.00052 1.8E-08 59.4 3.1 23 145-167 2-24 (205)
272 1kht_A Adenylate kinase; phosp 96.8 0.00063 2.2E-08 58.2 3.5 26 142-167 2-27 (192)
273 1uf9_A TT1252 protein; P-loop, 96.8 0.00054 1.8E-08 59.3 3.0 31 143-178 8-38 (203)
274 2b8t_A Thymidine kinase; deoxy 96.8 0.0012 4E-08 59.3 5.0 51 270-324 89-150 (223)
275 1fzq_A ADP-ribosylation factor 96.8 0.00057 2E-08 58.3 2.8 23 144-166 17-39 (181)
276 3lw7_A Adenylate kinase relate 96.8 0.00068 2.3E-08 56.7 3.2 19 145-163 3-21 (179)
277 1vht_A Dephospho-COA kinase; s 96.8 0.00076 2.6E-08 59.5 3.5 24 142-165 3-26 (218)
278 1gvn_B Zeta; postsegregational 96.7 0.00074 2.5E-08 62.8 3.5 34 143-178 33-66 (287)
279 2chg_A Replication factor C sm 96.7 0.0029 1E-07 54.6 7.2 44 269-313 101-144 (226)
280 2rhm_A Putative kinase; P-loop 96.7 0.00062 2.1E-08 58.4 2.7 27 141-167 3-29 (193)
281 1ex7_A Guanylate kinase; subst 96.7 0.00072 2.5E-08 58.9 3.1 22 146-167 4-25 (186)
282 3trf_A Shikimate kinase, SK; a 96.7 0.00088 3E-08 57.3 3.5 26 142-167 4-29 (185)
283 2ze6_A Isopentenyl transferase 96.7 0.00076 2.6E-08 61.4 3.2 24 144-167 2-25 (253)
284 3cmw_A Protein RECA, recombina 96.6 0.0052 1.8E-07 69.6 9.9 39 140-178 729-768 (1706)
285 2v54_A DTMP kinase, thymidylat 96.6 0.0012 4.1E-08 57.2 3.8 26 142-167 3-28 (204)
286 3bgw_A DNAB-like replicative h 96.6 0.0035 1.2E-07 61.9 7.6 33 133-165 187-219 (444)
287 3iij_A Coilin-interacting nucl 96.6 0.001 3.4E-08 56.8 3.0 27 141-167 9-35 (180)
288 1via_A Shikimate kinase; struc 96.6 0.00094 3.2E-08 56.7 2.6 23 145-167 6-28 (175)
289 2plr_A DTMP kinase, probable t 96.6 0.0013 4.4E-08 57.2 3.6 28 142-169 3-30 (213)
290 1ly1_A Polynucleotide kinase; 96.5 0.0012 4.3E-08 55.7 3.3 31 144-177 3-33 (181)
291 1ko7_A HPR kinase/phosphatase; 96.5 0.0019 6.5E-08 60.8 4.8 45 131-176 133-181 (314)
292 3k53_A Ferrous iron transport 96.5 0.0011 3.9E-08 60.7 3.1 24 145-168 5-28 (271)
293 2wwf_A Thymidilate kinase, put 96.5 0.0013 4.6E-08 57.2 3.3 26 141-166 8-33 (212)
294 1nn5_A Similar to deoxythymidy 96.5 0.0013 4.6E-08 57.3 3.3 28 140-167 6-33 (215)
295 2c95_A Adenylate kinase 1; tra 96.5 0.0014 4.9E-08 56.2 3.4 27 141-167 7-33 (196)
296 1xjc_A MOBB protein homolog; s 96.5 0.00082 2.8E-08 57.7 1.8 26 144-169 5-30 (169)
297 3zvl_A Bifunctional polynucleo 96.5 0.011 3.6E-07 57.9 9.8 26 141-166 256-281 (416)
298 2erx_A GTP-binding protein DI- 96.5 0.0028 9.7E-08 52.5 4.9 22 145-166 5-26 (172)
299 1tev_A UMP-CMP kinase; ploop, 96.5 0.0016 5.4E-08 55.7 3.4 25 142-166 2-26 (196)
300 1z2a_A RAS-related protein RAB 96.4 0.0015 5.1E-08 54.1 3.1 22 145-166 7-28 (168)
301 2ged_A SR-beta, signal recogni 96.4 0.0015 5.1E-08 55.8 3.2 24 144-167 49-72 (193)
302 3q72_A GTP-binding protein RAD 96.4 0.0014 5E-08 54.2 2.7 23 145-167 4-26 (166)
303 2dyk_A GTP-binding protein; GT 96.4 0.0018 6.1E-08 53.3 3.2 23 145-167 3-25 (161)
304 1kao_A RAP2A; GTP-binding prot 96.4 0.0018 6.1E-08 53.4 3.2 22 145-166 5-26 (167)
305 2nzj_A GTP-binding protein REM 96.4 0.0019 6.5E-08 53.9 3.4 23 145-167 6-28 (175)
306 2ce2_X GTPase HRAS; signaling 96.4 0.0016 5.6E-08 53.4 2.9 22 145-166 5-26 (166)
307 1nks_A Adenylate kinase; therm 96.4 0.0018 6E-08 55.3 3.1 24 145-168 3-26 (194)
308 3q85_A GTP-binding protein REM 96.3 0.002 6.8E-08 53.5 3.3 23 145-167 4-26 (169)
309 1u8z_A RAS-related protein RAL 96.3 0.0019 6.5E-08 53.2 3.1 22 145-166 6-27 (168)
310 3cbq_A GTP-binding protein REM 96.3 0.0016 5.5E-08 56.3 2.8 22 145-166 25-46 (195)
311 1z0j_A RAB-22, RAS-related pro 96.3 0.002 6.7E-08 53.4 3.2 23 145-167 8-30 (170)
312 1z08_A RAS-related protein RAB 96.3 0.002 7E-08 53.4 3.2 22 145-166 8-29 (170)
313 1c1y_A RAS-related protein RAP 96.3 0.002 7E-08 53.2 3.1 22 145-166 5-26 (167)
314 1ek0_A Protein (GTP-binding pr 96.3 0.002 7E-08 53.2 3.1 23 145-167 5-27 (170)
315 1g16_A RAS-related protein SEC 96.3 0.0019 6.5E-08 53.5 2.9 23 145-167 5-27 (170)
316 2vli_A Antibiotic resistance p 96.3 0.0015 5.3E-08 55.5 2.4 26 142-167 4-29 (183)
317 1ky3_A GTP-binding protein YPT 96.3 0.0021 7.3E-08 53.9 3.2 23 145-167 10-32 (182)
318 3tw8_B RAS-related protein RAB 96.3 0.002 6.8E-08 54.0 3.0 22 145-166 11-32 (181)
319 1svi_A GTP-binding protein YSX 96.3 0.0019 6.5E-08 55.2 2.9 23 144-166 24-46 (195)
320 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0022 7.6E-08 53.7 3.2 22 145-166 9-30 (177)
321 3ake_A Cytidylate kinase; CMP 96.3 0.0021 7.2E-08 55.7 3.1 23 145-167 4-26 (208)
322 2fn4_A P23, RAS-related protei 96.3 0.0021 7.1E-08 53.9 3.0 22 145-166 11-32 (181)
323 3pqc_A Probable GTP-binding pr 96.2 0.002 6.8E-08 54.8 2.9 23 145-167 25-47 (195)
324 2lkc_A Translation initiation 96.2 0.0027 9.2E-08 53.2 3.6 25 142-166 7-31 (178)
325 2bwj_A Adenylate kinase 5; pho 96.2 0.0023 7.9E-08 55.0 3.3 27 141-167 10-36 (199)
326 1jr3_A DNA polymerase III subu 96.2 0.0077 2.6E-07 57.0 7.2 43 270-313 119-161 (373)
327 2z0h_A DTMP kinase, thymidylat 96.2 0.0024 8.1E-08 54.9 3.3 23 145-167 2-24 (197)
328 1aky_A Adenylate kinase; ATP:A 96.2 0.0027 9.1E-08 56.0 3.7 27 141-167 2-28 (220)
329 3b1v_A Ferrous iron uptake tra 96.2 0.0024 8.2E-08 58.9 3.4 23 145-167 5-27 (272)
330 1r2q_A RAS-related protein RAB 96.2 0.0025 8.4E-08 52.7 3.1 22 145-166 8-29 (170)
331 3clv_A RAB5 protein, putative; 96.2 0.0025 8.4E-08 54.3 3.2 22 145-166 9-30 (208)
332 4dsu_A GTPase KRAS, isoform 2B 96.2 0.0025 8.6E-08 53.8 3.2 22 145-166 6-27 (189)
333 1zd8_A GTP:AMP phosphotransfer 96.2 0.0026 8.9E-08 56.4 3.3 27 141-167 5-31 (227)
334 2cxx_A Probable GTP-binding pr 96.2 0.0024 8.1E-08 54.1 2.9 23 145-167 3-25 (190)
335 2oil_A CATX-8, RAS-related pro 96.2 0.0027 9.1E-08 54.3 3.2 22 145-166 27-48 (193)
336 3fb4_A Adenylate kinase; psych 96.1 0.0027 9.4E-08 55.6 3.3 23 145-167 2-24 (216)
337 3t5d_A Septin-7; GTP-binding p 96.1 0.0022 7.6E-08 58.8 2.7 23 145-167 10-32 (274)
338 1upt_A ARL1, ADP-ribosylation 96.1 0.0028 9.5E-08 52.6 3.1 22 144-165 8-29 (171)
339 3bc1_A RAS-related protein RAB 96.1 0.0028 9.4E-08 53.7 3.1 22 145-166 13-34 (195)
340 2hxs_A RAB-26, RAS-related pro 96.1 0.0031 1.1E-07 52.8 3.4 22 145-166 8-29 (178)
341 1r8s_A ADP-ribosylation factor 96.1 0.0029 9.9E-08 52.2 3.1 21 145-165 2-22 (164)
342 3t1o_A Gliding protein MGLA; G 96.1 0.003 1E-07 53.7 3.3 25 145-169 16-40 (198)
343 2y8e_A RAB-protein 6, GH09086P 96.1 0.0027 9.3E-08 53.0 2.9 22 145-166 16-37 (179)
344 2cdn_A Adenylate kinase; phosp 96.1 0.0034 1.2E-07 54.5 3.6 25 143-167 20-44 (201)
345 1z0f_A RAB14, member RAS oncog 96.1 0.0031 1.1E-07 52.6 3.1 23 145-167 17-39 (179)
346 3con_A GTPase NRAS; structural 96.1 0.0031 1.1E-07 53.7 3.1 22 145-166 23-44 (190)
347 2g6b_A RAS-related protein RAB 96.1 0.0031 1.1E-07 52.9 3.1 23 145-167 12-34 (180)
348 1moz_A ARL1, ADP-ribosylation 96.1 0.0019 6.4E-08 54.5 1.7 22 144-165 19-40 (183)
349 2a9k_A RAS-related protein RAL 96.1 0.0031 1.1E-07 53.0 3.1 22 145-166 20-41 (187)
350 2pbr_A DTMP kinase, thymidylat 96.1 0.0033 1.1E-07 53.7 3.3 23 145-167 2-24 (195)
351 1wf3_A GTP-binding protein; GT 96.1 0.0031 1E-07 59.0 3.3 22 145-166 9-30 (301)
352 2pt5_A Shikimate kinase, SK; a 96.0 0.0035 1.2E-07 52.5 3.3 23 145-167 2-24 (168)
353 1e6c_A Shikimate kinase; phosp 96.0 0.0029 9.8E-08 53.2 2.7 24 144-167 3-26 (173)
354 3dl0_A Adenylate kinase; phosp 96.0 0.0033 1.1E-07 55.1 3.3 23 145-167 2-24 (216)
355 2efe_B Small GTP-binding prote 96.0 0.0034 1.2E-07 52.7 3.2 22 145-166 14-35 (181)
356 1zuh_A Shikimate kinase; alpha 96.0 0.0037 1.3E-07 52.5 3.4 23 144-166 8-30 (168)
357 1ukz_A Uridylate kinase; trans 96.0 0.0034 1.2E-07 54.4 3.2 25 143-167 15-39 (203)
358 2xtp_A GTPase IMAP family memb 96.0 0.0033 1.1E-07 56.9 3.1 23 145-167 24-46 (260)
359 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0038 1.3E-07 56.9 3.6 25 142-166 3-27 (260)
360 4dhe_A Probable GTP-binding pr 96.0 0.0022 7.6E-08 56.1 1.9 24 144-167 30-53 (223)
361 2iyv_A Shikimate kinase, SK; t 96.0 0.003 1E-07 53.9 2.7 24 144-167 3-26 (184)
362 1qf9_A UMP/CMP kinase, protein 96.0 0.0036 1.2E-07 53.3 3.2 25 143-167 6-30 (194)
363 1zak_A Adenylate kinase; ATP:A 96.0 0.0029 1E-07 55.8 2.7 26 142-167 4-29 (222)
364 2bme_A RAB4A, RAS-related prot 96.0 0.0034 1.1E-07 53.1 2.9 22 145-166 12-33 (186)
365 1vg8_A RAS-related protein RAB 96.0 0.0038 1.3E-07 53.8 3.2 23 145-167 10-32 (207)
366 3kkq_A RAS-related protein M-R 95.9 0.0038 1.3E-07 52.6 3.1 22 145-166 20-41 (183)
367 2bov_A RAla, RAS-related prote 95.9 0.0038 1.3E-07 53.7 3.1 22 145-166 16-37 (206)
368 3iev_A GTP-binding protein ERA 95.9 0.0037 1.3E-07 58.5 3.3 23 144-166 11-33 (308)
369 3iby_A Ferrous iron transport 95.9 0.0035 1.2E-07 57.1 3.1 23 145-167 3-25 (256)
370 2gf9_A RAS-related protein RAB 95.9 0.0039 1.3E-07 53.1 3.1 23 145-167 24-46 (189)
371 3tkl_A RAS-related protein RAB 95.9 0.004 1.4E-07 53.1 3.1 23 145-167 18-40 (196)
372 2fg5_A RAB-22B, RAS-related pr 95.9 0.0037 1.3E-07 53.5 3.0 22 145-166 25-46 (192)
373 3cmu_A Protein RECA, recombina 95.9 0.031 1E-06 64.3 11.1 28 140-167 380-407 (2050)
374 2gf0_A GTP-binding protein DI- 95.9 0.0038 1.3E-07 53.4 3.0 21 145-165 10-30 (199)
375 1ksh_A ARF-like protein 2; sma 95.9 0.004 1.4E-07 52.8 3.1 25 142-166 17-41 (186)
376 1nrj_B SR-beta, signal recogni 95.9 0.0039 1.3E-07 54.4 3.1 23 145-167 14-36 (218)
377 2grj_A Dephospho-COA kinase; T 95.9 0.0042 1.4E-07 54.2 3.3 23 144-166 13-35 (192)
378 4b4t_L 26S protease subunit RP 95.9 0.025 8.5E-07 55.7 9.1 29 140-168 212-240 (437)
379 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0039 1.3E-07 52.9 2.9 22 145-166 9-30 (184)
380 1z06_A RAS-related protein RAB 95.9 0.0043 1.5E-07 52.8 3.2 22 145-166 22-43 (189)
381 1mh1_A RAC1; GTP-binding, GTPa 95.9 0.0043 1.5E-07 52.2 3.1 21 145-165 7-27 (186)
382 1uj2_A Uridine-cytidine kinase 95.9 0.0042 1.4E-07 56.1 3.3 24 144-167 23-46 (252)
383 3oes_A GTPase rhebl1; small GT 95.8 0.004 1.4E-07 53.7 2.9 23 145-167 26-48 (201)
384 1zbd_A Rabphilin-3A; G protein 95.8 0.0047 1.6E-07 53.2 3.3 23 145-167 10-32 (203)
385 2qmh_A HPR kinase/phosphorylas 95.8 0.0065 2.2E-07 53.5 4.2 35 132-167 24-58 (205)
386 3a8t_A Adenylate isopentenyltr 95.8 0.0053 1.8E-07 58.4 3.8 27 142-168 39-65 (339)
387 3t5g_A GTP-binding protein RHE 95.8 0.0043 1.5E-07 52.2 2.9 21 145-165 8-28 (181)
388 1jwy_B Dynamin A GTPase domain 95.8 0.0042 1.4E-07 57.7 3.1 23 145-167 26-48 (315)
389 2cjw_A GTP-binding protein GEM 95.8 0.0046 1.6E-07 53.2 3.1 22 145-166 8-29 (192)
390 2il1_A RAB12; G-protein, GDP, 95.8 0.0043 1.5E-07 53.2 2.9 22 145-166 28-49 (192)
391 2a5j_A RAS-related protein RAB 95.8 0.0047 1.6E-07 52.7 3.2 22 145-166 23-44 (191)
392 2dby_A GTP-binding protein; GD 95.8 0.004 1.4E-07 60.0 3.0 22 145-166 3-24 (368)
393 3dz8_A RAS-related protein RAB 95.8 0.0044 1.5E-07 53.0 2.9 23 145-167 25-47 (191)
394 3pxi_A Negative regulator of g 95.8 0.016 5.6E-07 60.8 7.9 23 145-167 523-545 (758)
395 2qu8_A Putative nucleolar GTP- 95.8 0.0046 1.6E-07 54.7 3.1 23 144-166 30-52 (228)
396 3tlx_A Adenylate kinase 2; str 95.8 0.005 1.7E-07 55.5 3.4 26 142-167 28-53 (243)
397 3i8s_A Ferrous iron transport 95.8 0.0046 1.6E-07 56.8 3.1 23 145-167 5-27 (274)
398 2o52_A RAS-related protein RAB 95.8 0.0049 1.7E-07 53.3 3.1 22 145-166 27-48 (200)
399 1zj6_A ADP-ribosylation factor 95.7 0.005 1.7E-07 52.3 3.1 22 144-165 17-38 (187)
400 1x3s_A RAS-related protein RAB 95.7 0.0052 1.8E-07 52.2 3.1 22 145-166 17-38 (195)
401 2h57_A ADP-ribosylation factor 95.7 0.0038 1.3E-07 53.3 2.2 23 145-167 23-45 (190)
402 2p5s_A RAS and EF-hand domain 95.7 0.0052 1.8E-07 52.9 3.2 24 144-167 29-52 (199)
403 3reg_A RHO-like small GTPase; 95.7 0.0052 1.8E-07 52.5 3.1 22 145-166 25-46 (194)
404 4bas_A ADP-ribosylation factor 95.7 0.005 1.7E-07 52.6 3.0 23 144-166 18-40 (199)
405 1zd9_A ADP-ribosylation factor 95.7 0.0053 1.8E-07 52.4 3.1 22 145-166 24-45 (188)
406 2ew1_A RAS-related protein RAB 95.7 0.0048 1.6E-07 53.7 2.9 22 145-166 28-49 (201)
407 2bcg_Y Protein YP2, GTP-bindin 95.7 0.0048 1.7E-07 53.3 2.9 22 145-166 10-31 (206)
408 3cph_A RAS-related protein SEC 95.7 0.0053 1.8E-07 53.1 3.1 23 144-166 21-43 (213)
409 2iwr_A Centaurin gamma 1; ANK 95.7 0.0046 1.6E-07 51.9 2.7 22 145-166 9-30 (178)
410 2atv_A RERG, RAS-like estrogen 95.7 0.0054 1.9E-07 52.6 3.2 23 144-166 29-51 (196)
411 3a1s_A Iron(II) transport prot 95.7 0.0054 1.9E-07 55.9 3.3 23 145-167 7-29 (258)
412 2h17_A ADP-ribosylation factor 95.7 0.0045 1.5E-07 52.4 2.6 22 145-166 23-44 (181)
413 2wsm_A Hydrogenase expression/ 95.7 0.005 1.7E-07 53.9 3.0 23 145-167 32-54 (221)
414 1a7j_A Phosphoribulokinase; tr 95.7 0.0029 9.7E-08 58.9 1.3 26 142-167 4-29 (290)
415 3def_A T7I23.11 protein; chlor 95.7 0.0053 1.8E-07 55.9 3.1 23 145-167 38-60 (262)
416 2f6r_A COA synthase, bifunctio 95.7 0.0052 1.8E-07 56.8 3.1 23 143-165 75-97 (281)
417 3bwd_D RAC-like GTP-binding pr 95.7 0.0065 2.2E-07 51.0 3.5 23 144-166 9-31 (182)
418 2fv8_A H6, RHO-related GTP-bin 95.7 0.0053 1.8E-07 53.3 3.0 22 145-166 27-48 (207)
419 3cnl_A YLQF, putative uncharac 95.7 0.0061 2.1E-07 55.8 3.5 30 144-173 100-129 (262)
420 3llu_A RAS-related GTP-binding 95.7 0.0062 2.1E-07 52.3 3.3 25 145-169 22-46 (196)
421 2f7s_A C25KG, RAS-related prot 95.6 0.0063 2.2E-07 53.0 3.4 23 145-167 27-49 (217)
422 2xb4_A Adenylate kinase; ATP-b 95.6 0.0062 2.1E-07 54.0 3.3 23 145-167 2-24 (223)
423 1h65_A Chloroplast outer envel 95.6 0.0056 1.9E-07 55.9 3.1 23 145-167 41-63 (270)
424 2aka_B Dynamin-1; fusion prote 95.6 0.0052 1.8E-07 56.5 2.9 23 145-167 28-50 (299)
425 2q3h_A RAS homolog gene family 95.6 0.0065 2.2E-07 52.2 3.3 23 144-166 21-43 (201)
426 3c5c_A RAS-like protein 12; GD 95.6 0.0063 2.2E-07 51.9 3.2 22 145-166 23-44 (187)
427 3cmw_A Protein RECA, recombina 95.6 0.08 2.7E-06 60.1 12.8 27 140-166 380-406 (1706)
428 2j1l_A RHO-related GTP-binding 95.6 0.0061 2.1E-07 53.3 3.1 21 145-165 36-56 (214)
429 3d3q_A TRNA delta(2)-isopenten 95.6 0.0062 2.1E-07 58.0 3.3 25 144-168 8-32 (340)
430 3exa_A TRNA delta(2)-isopenten 95.6 0.007 2.4E-07 57.0 3.6 25 143-167 3-27 (322)
431 1gwn_A RHO-related GTP-binding 95.6 0.006 2E-07 53.2 2.9 22 145-166 30-51 (205)
432 1jbk_A CLPB protein; beta barr 95.6 0.0074 2.5E-07 50.7 3.4 26 142-167 42-67 (195)
433 2fh5_B SR-beta, signal recogni 95.6 0.0065 2.2E-07 52.8 3.1 24 144-167 8-31 (214)
434 1e4v_A Adenylate kinase; trans 95.5 0.0064 2.2E-07 53.4 3.0 23 145-167 2-24 (214)
435 3be4_A Adenylate kinase; malar 95.5 0.0069 2.4E-07 53.4 3.2 26 142-167 4-29 (217)
436 2gco_A H9, RHO-related GTP-bin 95.5 0.0064 2.2E-07 52.5 2.9 22 145-166 27-48 (201)
437 2fu5_C RAS-related protein RAB 95.5 0.0044 1.5E-07 52.3 1.8 22 145-166 10-31 (183)
438 3u61_B DNA polymerase accessor 95.5 0.038 1.3E-06 51.4 8.5 44 270-314 105-149 (324)
439 1sxj_B Activator 1 37 kDa subu 95.5 0.017 5.9E-07 53.2 6.0 43 270-313 107-149 (323)
440 1ypw_A Transitional endoplasmi 95.5 0.00046 1.6E-08 73.3 -5.5 45 136-182 504-548 (806)
441 2b6h_A ADP-ribosylation factor 95.4 0.0064 2.2E-07 52.2 2.7 23 143-165 29-51 (192)
442 2atx_A Small GTP binding prote 95.4 0.0074 2.5E-07 51.5 3.0 22 145-166 20-41 (194)
443 1qvr_A CLPB protein; coiled co 95.4 0.02 6.8E-07 61.1 6.9 34 144-177 589-623 (854)
444 3v9p_A DTMP kinase, thymidylat 95.4 0.0064 2.2E-07 54.6 2.6 29 140-168 22-50 (227)
445 4edh_A DTMP kinase, thymidylat 95.4 0.0092 3.1E-07 52.9 3.5 29 141-169 4-32 (213)
446 2g3y_A GTP-binding protein GEM 95.4 0.009 3.1E-07 52.7 3.4 22 145-166 39-60 (211)
447 1ak2_A Adenylate kinase isoenz 95.3 0.0097 3.3E-07 53.0 3.6 26 142-167 15-40 (233)
448 1sky_E F1-ATPase, F1-ATP synth 95.3 0.01 3.5E-07 58.8 4.0 36 132-168 141-176 (473)
449 1ltq_A Polynucleotide kinase; 95.3 0.0089 3.1E-07 55.1 3.3 22 144-165 3-24 (301)
450 3lv8_A DTMP kinase, thymidylat 95.3 0.0098 3.3E-07 53.7 3.4 27 142-168 26-52 (236)
451 4djt_A GTP-binding nuclear pro 95.3 0.004 1.4E-07 54.3 0.8 22 145-166 13-34 (218)
452 2h92_A Cytidylate kinase; ross 95.3 0.0071 2.4E-07 53.0 2.4 25 143-167 3-27 (219)
453 2hf9_A Probable hydrogenase ni 95.3 0.0086 2.9E-07 52.6 2.9 23 145-167 40-62 (226)
454 3crm_A TRNA delta(2)-isopenten 95.3 0.0095 3.2E-07 56.3 3.3 25 144-168 6-30 (323)
455 2zts_A Putative uncharacterize 95.2 0.013 4.4E-07 52.0 4.1 24 140-163 27-50 (251)
456 2hup_A RAS-related protein RAB 95.2 0.0091 3.1E-07 51.6 3.0 22 145-166 31-52 (201)
457 4gzl_A RAS-related C3 botulinu 95.2 0.0092 3.1E-07 51.7 2.9 22 144-165 31-52 (204)
458 2x77_A ADP-ribosylation factor 95.2 0.0061 2.1E-07 51.8 1.7 22 144-165 23-44 (189)
459 3euj_A Chromosome partition pr 95.2 0.03 1E-06 55.8 6.8 74 246-324 373-464 (483)
460 3cpj_B GTP-binding protein YPT 95.2 0.01 3.6E-07 52.1 3.2 23 145-167 15-37 (223)
461 2p65_A Hypothetical protein PF 95.2 0.0097 3.3E-07 49.9 2.9 27 142-168 42-68 (187)
462 4tmk_A Protein (thymidylate ki 95.2 0.011 3.9E-07 52.3 3.4 27 142-168 2-28 (213)
463 2yc2_C IFT27, small RAB-relate 95.2 0.0045 1.6E-07 53.2 0.8 22 145-166 22-43 (208)
464 2ocp_A DGK, deoxyguanosine kin 95.2 0.011 3.8E-07 52.9 3.3 27 142-168 1-27 (241)
465 3tqf_A HPR(Ser) kinase; transf 95.1 0.018 6.2E-07 49.5 4.4 33 132-165 6-38 (181)
466 3foz_A TRNA delta(2)-isopenten 95.1 0.012 4E-07 55.4 3.5 25 143-167 10-34 (316)
467 3q3j_B RHO-related GTP-binding 95.1 0.011 3.9E-07 51.6 3.1 22 145-166 29-50 (214)
468 3ld9_A DTMP kinase, thymidylat 95.1 0.013 4.3E-07 52.5 3.4 28 141-168 19-46 (223)
469 3tmk_A Thymidylate kinase; pho 95.0 0.013 4.4E-07 52.1 3.3 29 141-169 3-31 (216)
470 1lw7_A Transcriptional regulat 95.0 0.0083 2.8E-07 57.4 2.1 33 248-280 292-329 (365)
471 3cmu_A Protein RECA, recombina 94.9 0.092 3.2E-06 60.5 10.7 34 131-164 1067-1102(2050)
472 2j0v_A RAC-like GTP-binding pr 94.9 0.012 4.2E-07 50.9 2.9 22 145-166 11-32 (212)
473 1a5t_A Delta prime, HOLB; zinc 94.9 0.12 4.1E-06 48.5 10.0 43 270-313 108-150 (334)
474 1p5z_B DCK, deoxycytidine kina 94.9 0.0095 3.2E-07 54.1 2.1 28 141-168 22-49 (263)
475 3umf_A Adenylate kinase; rossm 94.8 0.016 5.5E-07 51.5 3.3 28 140-167 26-53 (217)
476 1puj_A YLQF, conserved hypothe 94.7 0.019 6.6E-07 53.0 3.8 26 144-169 121-146 (282)
477 3eph_A TRNA isopentenyltransfe 94.7 0.016 5.5E-07 56.4 3.3 24 144-167 3-26 (409)
478 3r7w_A Gtpase1, GTP-binding pr 94.7 0.018 6E-07 53.8 3.5 25 143-167 3-27 (307)
479 3ec1_A YQEH GTPase; atnos1, at 94.6 0.015 5.2E-07 55.9 2.9 25 142-166 161-185 (369)
480 2r62_A Cell division protease 94.5 0.0041 1.4E-07 56.4 -1.3 27 139-167 42-68 (268)
481 3h2y_A GTPase family protein; 94.5 0.015 5.1E-07 55.9 2.4 25 142-166 159-183 (368)
482 2hjg_A GTP-binding protein ENG 94.4 0.017 5.8E-07 56.7 2.8 22 145-166 5-26 (436)
483 1wxq_A GTP-binding protein; st 94.4 0.019 6.5E-07 55.8 3.1 23 145-167 2-24 (397)
484 2orw_A Thymidine kinase; TMTK, 94.4 0.023 8E-07 48.9 3.4 52 270-325 76-138 (184)
485 3gj0_A GTP-binding nuclear pro 94.4 0.014 4.7E-07 51.1 1.9 22 145-166 17-39 (221)
486 2x2e_A Dynamin-1; nitration, h 94.4 0.013 4.4E-07 55.8 1.8 23 145-167 33-55 (353)
487 3th5_A RAS-related C3 botulinu 93.4 0.0073 2.5E-07 52.1 0.0 22 144-165 31-52 (204)
488 2v3c_C SRP54, signal recogniti 94.3 0.0062 2.1E-07 59.9 -0.6 37 144-180 100-136 (432)
489 3p32_A Probable GTPase RV1496/ 94.2 0.018 6.2E-07 54.9 2.5 25 144-168 80-104 (355)
490 3sr0_A Adenylate kinase; phosp 94.2 0.026 9E-07 49.6 3.3 23 145-167 2-24 (206)
491 1lnz_A SPO0B-associated GTP-bi 94.1 0.029 9.9E-07 53.4 3.6 33 134-166 149-181 (342)
492 4hlc_A DTMP kinase, thymidylat 94.1 0.031 1E-06 49.1 3.4 26 143-168 2-27 (205)
493 2qpt_A EH domain-containing pr 94.1 0.023 7.7E-07 57.7 2.9 23 145-167 67-89 (550)
494 3geh_A MNME, tRNA modification 94.1 0.025 8.5E-07 56.1 3.1 25 142-166 223-247 (462)
495 3l0i_B RAS-related protein RAB 94.0 0.005 1.7E-07 53.0 -1.8 22 145-166 35-56 (199)
496 3uk6_A RUVB-like 2; hexameric 94.0 0.026 8.9E-07 53.4 3.0 38 141-178 68-105 (368)
497 2j69_A Bacterial dynamin-like 93.9 0.029 1E-06 58.5 3.4 26 142-167 68-93 (695)
498 2orv_A Thymidine kinase; TP4A 93.8 0.13 4.6E-06 46.1 7.2 51 269-324 89-150 (234)
499 1f5n_A Interferon-induced guan 93.8 0.025 8.4E-07 57.8 2.6 25 143-167 38-62 (592)
500 2vhj_A Ntpase P4, P4; non- hyd 93.8 0.037 1.3E-06 52.3 3.6 28 138-165 118-145 (331)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.8e-70 Score=608.18 Aligned_cols=303 Identities=25% Similarity=0.335 Sum_probs=257.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCC
Q 018040 48 VDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAP 127 (362)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~ 127 (362)
+.+..+..++.+......++..+...+..++..+.+++|+.++++.+++.+. ...+...||..+.|+|+||+|+|++
T Consensus 1012 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~ 1088 (1321)
T 4f4c_A 1012 MQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPE 1088 (1321)
T ss_dssp SCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCC---ccCCCCCCCCCCeEEEEEEEEeCCC
Confidence 3444333333333222334445566778899999999999999987655321 1223345677889999999999975
Q ss_pred C-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCccc
Q 018040 128 H-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGS 206 (362)
Q Consensus 128 ~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t 206 (362)
+ ..+||+|+||+|++||++|||||||||||||+++|+|+++|++|+|.|||+|+++++.+++|++|+||||+|.+|++|
T Consensus 1089 ~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gT 1168 (1321)
T 4f4c_A 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCS 1168 (1321)
T ss_dssp SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEE
T ss_pred CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCcc
Confidence 4 336999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcC---CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 018040 207 VHNNLDPL---EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 283 (362)
Q Consensus 207 v~enl~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~L 283 (362)
++|||.++ .++++++++++++.+++++++..+|+||||.++|+|.+||||||||+||||||+++|+|||||||||+|
T Consensus 1169 IreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaL 1248 (1321)
T 4f4c_A 1169 IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248 (1321)
T ss_dssp HHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCST
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccC
Confidence 99999765 357899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 284 DTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
|+++++.|++.|++..+++|+|+||||++++.+||||+||++|+|+|+|+|+||+++ ++.|++|++.+..
T Consensus 1249 D~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1249 DTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMT 1318 (1321)
T ss_dssp TSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C------------
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHHh
Confidence 999999999999998899999999999999999999999999999999999999997 6789999986643
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.4e-67 Score=581.20 Aligned_cols=309 Identities=23% Similarity=0.352 Sum_probs=280.2
Q ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEE
Q 018040 42 SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGL 121 (362)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 121 (362)
.+..|.++++.+..++.|...+..++..+...+..++++.++++|+.++++.+++.+... .......+..+.|+++||
T Consensus 344 ~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~I~~~nv 421 (1321)
T 4f4c_A 344 WVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSS--KAGRKDMKIKGDITVENV 421 (1321)
T ss_dssp HHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSS--SCCCCCCCCCCCEEEEEE
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc--cccccCCCCCCcEEEEEe
Confidence 346788999988888888888888888888999999999999999999998765432111 111222344678999999
Q ss_pred EEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 122 QVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 122 ~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
+|+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+.+|++||||+|+|
T Consensus 422 sF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~ 501 (1321)
T 4f4c_A 422 HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501 (1321)
T ss_dssp EECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred eeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcc
Confidence 9999753 357999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCC
Q 018040 201 TMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 279 (362)
Q Consensus 201 ~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEP 279 (362)
++|++|++|||.++. ..++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||++++|+|||||||
T Consensus 502 ~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~ 581 (1321)
T 4f4c_A 502 ALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA 581 (1321)
T ss_dssp CCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred eeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecc
Confidence 999999999999875 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 280 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
||+||+++++.+++.|.+..+++|+|+||||++++..||+|+||++|+|+|.|+|+||+++ ++.|++++..+.
T Consensus 582 tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 582 TSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 9999999999999999998899999999999999999999999999999999999999987 678999887543
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-66 Score=534.53 Aligned_cols=308 Identities=27% Similarity=0.412 Sum_probs=275.1
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQ 122 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 122 (362)
+..+.++++.+..++.|...+..++..+...+..++++..+++|+.++++.+++... .......++..+.|+++||+
T Consensus 272 v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~v~ 348 (587)
T 3qf4_A 272 VRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEE---ADNALALPNVEGSVSFENVE 348 (587)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC---CTTCBCCSCCCCCEEEEEEE
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC---CCCccccCCCCCcEEEEEEE
Confidence 346778888888888888888888888888899999999999999999986654221 11111112345679999999
Q ss_pred EEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 123 VRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 123 ~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++|+||||+|.+
T Consensus 349 ~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 428 (587)
T 3qf4_A 349 FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428 (587)
T ss_dssp ECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC
T ss_pred EEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC
Confidence 99976556799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC
Q 018040 203 FEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 203 ~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts 281 (362)
|++|++||+.+.. ..++++++++++.+++.+++..+|.|+++.++++|.+||||||||++|||||+++|++||||||||
T Consensus 429 f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts 508 (587)
T 3qf4_A 429 FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTS 508 (587)
T ss_dssp CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCT
T ss_pred cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999999998764 467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 282 SVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 282 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
+||+++++.+++.+++..+++|+|+||||++.+..||||++|++|+|++.|+|+|++++ ++.|++++..+..
T Consensus 509 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~-~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 509 SVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPYREIYESQFG 580 (587)
T ss_dssp TSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH-CHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHhc
Confidence 99999999999999988789999999999999988999999999999999999999987 5678888876643
No 4
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.6e-65 Score=529.29 Aligned_cols=338 Identities=26% Similarity=0.387 Sum_probs=288.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 9 RPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERI 87 (362)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl 87 (362)
+..+.......|.....+++..+..++++++. ..+..|.++++.+..++.+...+..++..+...+..++++..+++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri 318 (582)
T 3b5x_A 239 QQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTL 318 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555554433333322 23346788989888888888888999999999999999999999999
Q ss_pred HHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 88 LQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++.+++.+. .. ...++..+.++++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|++
T Consensus 319 ~~~l~~~~~~~~----~~-~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 319 FGLMDLETERDN----GK-YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred HHHHcCCCcCCC----CC-CCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999986554211 10 1112234679999999999753346999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchhh
Q 018040 168 EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESR 245 (362)
Q Consensus 168 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~ 245 (362)
+|++|+|.+||+++.+.+.+++|++++||||+|.+|++|++||+.+.. ..++++++++++.++++++++++|+|++|.
T Consensus 394 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~ 473 (582)
T 3b5x_A 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTV 473 (582)
T ss_pred CCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccch
Confidence 999999999999999888888999999999999999999999998754 466888999999999999999999999999
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
++++|.+||||||||++|||||+++|++||||||||+||+.+++.+.+.+++..+++|+|+||||++.+..||||++|++
T Consensus 474 ~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 553 (582)
T 3b5x_A 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDE 553 (582)
T ss_pred hcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999987778999999999999988999999999
Q ss_pred CEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 326 GLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 326 G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
|++++.|++++++++ .+.|++++..+
T Consensus 554 G~i~~~g~~~~l~~~-~~~~~~~~~~q 579 (582)
T 3b5x_A 554 GEIIERGRHADLLAQ-DGAYAQLHRIQ 579 (582)
T ss_pred CEEEEECCHHHHHhC-CcHHHHHHHHh
Confidence 999999999999876 56788888765
No 5
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1e-65 Score=530.60 Aligned_cols=339 Identities=24% Similarity=0.357 Sum_probs=289.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018040 8 SRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFII-SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVER 86 (362)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~R 86 (362)
.+..+.......|.....+++..+..++++++.. .+..|.++++.+..++.|...+..++..+...+..++++..+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 317 (582)
T 3b60_A 238 RLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556665666655544433333322 234577888888888888888888999999999999999999999
Q ss_pred HHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 87 ILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.++++.+++.+. . ....++..+.++++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 318 i~~~l~~~~~~~~----~-~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 318 LFAILDSEQEKDE----G-KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp HHHHHHSCCSCCC----C-CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred HHHHHcCCCCccC----C-CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 9999987654221 1 0111223467999999999975324699999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC--CCCHHHHHHHHHHcCCChHHHhccccchh
Q 018040 167 VEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLES 244 (362)
Q Consensus 167 ~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~ 244 (362)
++|++|+|.+||+++.+.+.+++|++++||||+|.+|++|++||+.+.. ..++++++++++.++++++++++|+|++|
T Consensus 393 ~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 393 YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp TCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred cCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccc
Confidence 9999999999999999988889999999999999999999999998754 46788899999999999999999999999
Q ss_pred hhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEe
Q 018040 245 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 245 ~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
.++++|.+||||||||++|||||+++|+++|||||||+||+.+++.+.+.+++..+++|+|+||||++.+..||||++|+
T Consensus 473 ~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 552 (582)
T 3b60_A 473 IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 552 (582)
T ss_dssp BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEE
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999998777999999999999998899999999
Q ss_pred CCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 325 YGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 325 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
+|++++.|++++++++ ++.|++++..+
T Consensus 553 ~G~i~~~g~~~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 553 DGIIVERGTHSELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp TTEEEEEECHHHHHHH-TSSHHHHHHHT
T ss_pred CCEEEEecCHHHHHHc-CCHHHHHHHHh
Confidence 9999999999999886 56788887654
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.2e-66 Score=531.82 Aligned_cols=303 Identities=25% Similarity=0.368 Sum_probs=272.6
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEE
Q 018040 44 PEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQV 123 (362)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 123 (362)
..+.++++.+..++.|...+..++..+...+..++++..+++|+.++++.+++... .......++..+.++++||+|
T Consensus 271 ~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~v~~ 347 (578)
T 4a82_A 271 ISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKN---GVGAQPIEIKQGRIDIDHVSF 347 (578)
T ss_dssp HHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCC---CTTCCCCCCCSCCEEEEEEEE
T ss_pred HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCccccCCCCCeEEEEEEEE
Confidence 45778888888888888888888888999999999999999999999987654321 111111123456799999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 124 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 124 ~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.+++|+++|||||+|.+|
T Consensus 348 ~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 427 (578)
T 4a82_A 348 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF 427 (578)
T ss_dssp CSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC
T ss_pred EcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccC
Confidence 99865557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
++|++||+.+.. ..++++++++++.+++.++++.+|.|++|.++++|.+||||||||++|||||+++|+++|||||||+
T Consensus 428 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~ 507 (578)
T 4a82_A 428 SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507 (578)
T ss_dssp SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 999999998754 4567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
||+.+++.+.+.+++..+++|+|+||||++.+..||||++|++|++++.|+|+|++++ ++.|++++.
T Consensus 508 LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~-~~~~~~~~~ 574 (578)
T 4a82_A 508 LDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYS 574 (578)
T ss_dssp CCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 9999999999999988788999999999999988999999999999999999999987 567877764
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3e-65 Score=528.38 Aligned_cols=308 Identities=25% Similarity=0.381 Sum_probs=261.7
Q ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCccc-EEEEEE
Q 018040 43 VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGE-VDIHGL 121 (362)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~l 121 (362)
+..|.++++.+..++.|...+..++..+...+..++++..+++|+.++++.+++.+.. ... ....+..+. |+++||
T Consensus 271 v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~-~~~~~~~~~~i~~~~v 347 (595)
T 2yl4_A 271 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN--EGV-ILNEKSFQGALEFKNV 347 (595)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS--CSB-CCCTTTCCCCEEEEEE
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC--CCC-CCCcCCCCCeEEEEEE
Confidence 3467889888888888888888889999999999999999999999999866542211 111 111123456 999999
Q ss_pred EEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 122 QVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 122 ~~~y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
+|+|++. ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.+++|++++||||+|
T Consensus 348 ~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~ 427 (595)
T 2yl4_A 348 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427 (595)
T ss_dssp EEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSC
T ss_pred EEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCC
Confidence 9999753 246999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred CCCcccHHhhcCcCCC----CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEE
Q 018040 201 TMFEGSVHNNLDPLEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVL 276 (362)
Q Consensus 201 ~l~~~tv~enl~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illL 276 (362)
.+|++|++||+.+... .++++++++++.++++++++++|+++++.++++|.+||||||||++|||||+++|++|||
T Consensus 428 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illl 507 (595)
T 2yl4_A 428 ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLL 507 (595)
T ss_dssp CCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999977533 567889999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHh
Q 018040 277 DEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 353 (362)
Q Consensus 277 DEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 353 (362)
|||||+||+.+++.+.+.+++..+++|+|+||||++.+..||||++|++|++++.|+++|+++++++.|++++..+.
T Consensus 508 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 508 DEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp ECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C----------
T ss_pred ECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhh
Confidence 99999999999999999999877789999999999999889999999999999999999998755678888877554
No 8
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=8.8e-67 Score=497.03 Aligned_cols=276 Identities=26% Similarity=0.427 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCC
Q 018040 74 LCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTG 153 (362)
Q Consensus 74 ~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nG 153 (362)
+..++.++++++|++++++.+++.... ......++..+.|+++||+|+|++. .++|+||||+|++||++||+||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDL---PGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCC---TTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSC
T ss_pred chhHHHHHHHHHHHHHHHhCCcccccc---ccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCC
Confidence 446777888999999998654332110 0011112234679999999999754 469999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCC
Q 018040 154 SGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLG 232 (362)
Q Consensus 154 sGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~ 232 (362)
||||||+++|+|+++|++|+|.++|+++..++...+|++||||||++.+|++||+||+.+.. ...+++++++++.+++.
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999998764 35678899999999999
Q ss_pred hHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChh
Q 018040 233 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 312 (362)
Q Consensus 233 ~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 312 (362)
+++..+|.++++.++++|.+|||||||||+|||||+++|+|||||||||+||+.+++.+++.|++..+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877899999999999
Q ss_pred hhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 313 SVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 313 ~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
.+..||||++|++|+|++.|+++++++. .+.|.+++..+..
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 9999999999999999999999999987 5789998876654
No 9
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-66 Score=536.48 Aligned_cols=307 Identities=28% Similarity=0.420 Sum_probs=275.8
Q ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEE
Q 018040 42 SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGL 121 (362)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 121 (362)
.+..+.++++.+..++.|...+..++..+...+..++++..+++|+.++++.+++.+. ......++..+.|+++||
T Consensus 285 l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~~~~~~~i~~~~v 360 (598)
T 3qf4_B 285 LALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREVRGEIEFKNV 360 (598)
T ss_dssp HGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCCCSCCCCEEEEEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCCCCCCCeEEEEEE
Confidence 3456778888888888888888888888999999999999999999999987654321 111112344568999999
Q ss_pred EEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 122 QVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 122 ~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++++||||+|.
T Consensus 361 ~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~ 439 (598)
T 3qf4_B 361 WFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI 439 (598)
T ss_dssp ECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC
T ss_pred EEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc
Confidence 9999754 359999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 202 MFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 202 l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
+|++|++||+.+.. ..++++++++++.++++++++.+|.|++|.++++|.+||||||||++|||||+++|++|||||||
T Consensus 440 lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt 519 (598)
T 3qf4_B 440 LFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519 (598)
T ss_dssp CCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99999999998754 35677889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhh
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQ 354 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 354 (362)
|+||+.+++.+.+.+++..+++|+|+||||++.+..||||++|++|+|++.|+|+|++++ ++.|++++..+..
T Consensus 520 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhh
Confidence 999999999999999988789999999999999988999999999999999999999986 5789898877654
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.2e-61 Score=535.64 Aligned_cols=305 Identities=23% Similarity=0.347 Sum_probs=264.2
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVR 124 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 124 (362)
.+.++++.+..++.+...+..++..+...+..++.+..+++|+.++++.+++.+...... ....+..+.|+++||+|+
T Consensus 319 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~i~~~~v~~~ 396 (1284)
T 3g5u_A 319 SKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSG--HKPDNIQGNLEFKNIHFS 396 (1284)
T ss_dssp HSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSC--CCCTTCCCCEEEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccC--CCCCCCCCeEEEEEEEEE
Confidence 455565555444444445555666777788899999999999999998655422111111 111233568999999999
Q ss_pred eCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 125 YAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 125 y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+++..++.+++|++||||||+|++|
T Consensus 397 y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 476 (1284)
T 3g5u_A 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476 (1284)
T ss_dssp CSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCC
T ss_pred cCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccC
Confidence 9754 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 204 EGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 204 ~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
++|++||+.+.. ..++++++++++.+++.+++..+|.+++|.++++|.+|||||||||+|||||+++|+|||||||||+
T Consensus 477 ~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~ 556 (1284)
T 3g5u_A 477 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556 (1284)
T ss_dssp SSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCS
T ss_pred CccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 999999998754 4678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHH
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 352 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 352 (362)
||+++++.+++.++...+++|+|+||||++++..||+|++|++|+|++.|+|++++++ .+.|.+++...
T Consensus 557 LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 625 (1284)
T 3g5u_A 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQ 625 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHh
Confidence 9999999999999887789999999999999999999999999999999999999987 56777776543
No 11
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.1e-60 Score=438.48 Aligned_cols=238 Identities=29% Similarity=0.455 Sum_probs=217.8
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++||+++|++...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 46999999999942224699999999999999999999999999999999999999999999999999888777788889
Q ss_pred EEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 194 SIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
+||||++.+|+.|++||+.+.. ...++++.++++.+++.++++++|.++++.+++++.+|||||||||+|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999889999998753 345677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 273 VLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 273 illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
+|||||||++||+.+++.+.+.|++..+++|||+|||+++.+..||||++|++|++++.|+++++++.+.+.|.+++..
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 9999999999999999999999988766899999999999987799999999999999999999987756778777654
No 12
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.9e-60 Score=528.06 Aligned_cols=308 Identities=25% Similarity=0.382 Sum_probs=263.0
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcccEEEEEEEEE
Q 018040 45 EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVR 124 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 124 (362)
.+.++.+.+..++.+......++..+...+..+..+..+++|+.++++.+++..... ......++..+.++++||+|+
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~ 1039 (1284)
T 3g5u_A 962 QQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYS--TQGLKPNMLEGNVQFSGVVFN 1039 (1284)
T ss_dssp SSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCC--SSCCCTTTTSCCEEEEEEEBC
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc--cccccccCCCCcEEEEEEEEE
Confidence 445555444444444444444455555555567888999999999998665432111 111122344578999999999
Q ss_pred eCCC-CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 125 YAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 125 y~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..++.+.+|++|+||||+|.+|
T Consensus 1040 y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 1119 (1284)
T 3g5u_A 1040 YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119 (1284)
T ss_dssp CSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC
T ss_pred CCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccc
Confidence 9753 236999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhcCcCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 204 EGSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 204 ~~tv~enl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
++|++||+.+.. ..++++++++++.+++++++.++|.+++|.++++|.+|||||||||+|||||+++|+||||||||
T Consensus 1120 ~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpT 1199 (1284)
T 3g5u_A 1120 DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1199 (1284)
T ss_dssp SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCS
T ss_pred cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 999999998653 35788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHHHhhc
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQR 355 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 355 (362)
|+||+.+++.+++.+++..+++|+|+||||++++..||||+||++|+|++.|+|++++++ ++.|++++..+...
T Consensus 1200 s~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGA 1273 (1284)
T ss_dssp SSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC--
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhhc
Confidence 999999999999999887789999999999999988999999999999999999999987 67899999876543
No 13
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-58 Score=453.30 Aligned_cols=238 Identities=36% Similarity=0.646 Sum_probs=221.8
Q ss_pred CCCCcccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH
Q 018040 109 SWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD 188 (362)
Q Consensus 109 ~~~~~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~ 188 (362)
.|+..+.|+++||+|+|++...++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+...
T Consensus 13 ~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 13 IWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 466677899999999996444569999999999999999999999999999999999998 8999999999999999888
Q ss_pred HhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 189 LRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
+|++|+||||++.+|+.|+++|+.+.....+++++++++.+++.+..++.|.++++.+++.+.+|||||||||+|||||+
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999876666788899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHH
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 347 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 347 (362)
++|++||||||||+||+.++..+.+.|++...++|+|+|||+++.+..||||++|++|+|++.|+++++++++...|..
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 9999999999999999999999999998877789999999999888779999999999999999999999987766644
No 14
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.4e-58 Score=427.95 Aligned_cols=237 Identities=29% Similarity=0.460 Sum_probs=214.9
Q ss_pred ccEEEEEEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 114 GEVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 3599999999997532 3599999999999999999999999999999999999987 8999999999987777778889
Q ss_pred cEEEcCCCCCCcccHHhhcCcCC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
|+||||++.+|+.|++||+.+.. ...++++.++++.+++.+.+..++.++++.+++++.+|||||||||+|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999889999997643 23466778889999999988889999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
++|||||||++||+.+++.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999987678999999999999877999999999999999999999876 4567777665
Q ss_pred H
Q 018040 352 Y 352 (362)
Q Consensus 352 ~ 352 (362)
.
T Consensus 254 ~ 254 (260)
T 2ghi_A 254 Q 254 (260)
T ss_dssp H
T ss_pred h
Confidence 4
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-59 Score=430.56 Aligned_cols=233 Identities=31% Similarity=0.530 Sum_probs=211.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|+++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999532 359999999999999999999999999999999999999999999999999987666667888999
Q ss_pred EcCCCCCCcccHHhhcCcC--CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 196 IPQDPTMFEGSVHNNLDPL--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
|||++.+|+.|++||+.+. ....++++.++++.+++.+.++++|.++++.+++++.+|||||||||+|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999989999999875 23456778899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 274 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
|||||||++||+.+++.+.+.|++..+++|||++||+++.+..||||++|++|++++.|+++++++. ...|.+++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 9999999999999999999999886678999999999998877999999999999999999999875 345555553
No 16
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.7e-58 Score=430.20 Aligned_cols=238 Identities=28% Similarity=0.400 Sum_probs=211.9
Q ss_pred ccEEEEEEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 114 GEVDIHGLQVRYAP-HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
+.|+++||+++|++ ...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975 12359999999999999999999999999999999999999999999999999987777777888
Q ss_pred cEEEcCCCCCCcccHHhhcCcCCC-CCH-HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 193 LSIIPQDPTMFEGSVHNNLDPLEE-YAD-EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 193 i~~v~Q~~~l~~~tv~enl~~~~~-~~~-~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
|+||||++.+|+.|++||+.+... ... +++.++++..++.+.+..++.++++.+++++.+|||||||||+|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998899999976432 222 556667777888888888888899999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
|++|||||||++||+.+++.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|+++++++. ...|.++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 253 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSM 253 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHHH
Confidence 999999999999999999999999988753 7999999999999878999999999999999999999876 4678777
Q ss_pred HHHH
Q 018040 349 VAEY 352 (362)
Q Consensus 349 ~~~~ 352 (362)
+...
T Consensus 254 ~~~~ 257 (271)
T 2ixe_A 254 VEAL 257 (271)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 6544
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.1e-55 Score=404.89 Aligned_cols=221 Identities=23% Similarity=0.331 Sum_probs=195.0
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.++++|++++|++...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999964334699999999999999999999999999999999999999999999998 49
Q ss_pred EEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 194 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
+|+||++.+|+.|++||+.+..........++++.+++.+.++.++.+.++.+++++.+||||||||++|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999998999999987544444456667788888888888888888889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHH
Q 018040 274 LVLDEATASVDTATDNLIQHTL-GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 348 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 348 (362)
|||||||++||+.+++.+.+.+ .+..+++|||++||+++.+..||+|++|++|++++.|+++++.+.. ..|.++
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~-~~~~~~ 226 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQ-PDFSSK 226 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHH
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcC-hHHHHH
Confidence 9999999999999999999974 5555578999999999988779999999999999999999997652 345443
No 18
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.1e-56 Score=429.61 Aligned_cols=226 Identities=25% Similarity=0.374 Sum_probs=195.0
Q ss_pred cccEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH--
Q 018040 113 QGEVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-- 188 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-- 188 (362)
...|+++||+++|+.+. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..+
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 34699999999996432 35899999999999999999999999999999999999999999999999998887654
Q ss_pred -HhcCcEEEcCCCCCCcc-cHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 -LRSRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 -~r~~i~~v~Q~~~l~~~-tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+|++||||||++.+|+. ||+||+.+. .... .+++.++++.+++.+. .+.++.+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG-----------TTCCTTTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHH
Confidence 47789999999998875 999999652 1122 3456677888776543 34456678999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~ 336 (362)
||+|||||+.+|++||||||||+||+.+++.+++.|+++. .|+|||+|||+++.+.. ||||++|++|+|++.|++++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999998864 38999999999999987 99999999999999999999
Q ss_pred HhhcCCcHHHHHH
Q 018040 337 LLENKSSSFAQLV 349 (362)
Q Consensus 337 l~~~~~~~~~~~~ 349 (362)
++.++...+.+.+
T Consensus 251 v~~~p~~~~~~~~ 263 (366)
T 3tui_C 251 VFSHPKTPLAQKF 263 (366)
T ss_dssp HHSSCCSHHHHHH
T ss_pred HHhCCCcHHHHHH
Confidence 9988766665443
No 19
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=9.5e-56 Score=407.43 Aligned_cols=224 Identities=24% Similarity=0.392 Sum_probs=197.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|++...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 4899999999974334699999999999999999999999999999999999999999999998 399
Q ss_pred EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 195 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 195 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
||||++.++..|++||+.+......+...++++.+++.+.+...+.++++.+++++.+|||||||||+|||||+++|++|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999999875443344556677778887777777777888889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH---hhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHHH
Q 018040 275 VLDEATASVDTATDNLIQHTLG---QHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 351 (362)
Q Consensus 275 lLDEPts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 351 (362)
||||||++||+.+++.+.+.+. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. ...|.+++..
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 228 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRT 228 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHHH
Confidence 9999999999999999999984 33457999999999998877999999999999999999999876 4567776654
Q ss_pred H
Q 018040 352 Y 352 (362)
Q Consensus 352 ~ 352 (362)
+
T Consensus 229 ~ 229 (237)
T 2cbz_A 229 Y 229 (237)
T ss_dssp T
T ss_pred H
Confidence 3
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.6e-55 Score=413.92 Aligned_cols=214 Identities=28% Similarity=0.392 Sum_probs=184.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~ 192 (362)
.|+++||+++|++. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 59999999999754 359999999999999999999999999999999999999999999999999842 223457889
Q ss_pred cEEEcCCC--CCCcccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 193 LSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 193 i~~v~Q~~--~l~~~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
||||||+| .+|..||++|+.+.. ... .+++.++++.+++.+..+ +.+.+|||||||||+|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHHHH
Confidence 99999997 467789999996521 122 345667788887755433 3445689999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
||||+.+|++|||||||++||+.+++.+.+.++++. +++|||+|||+++.+.. ||||++|++|++++.|++++++.+
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 38999999999999987 999999999999999999999765
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5e-55 Score=402.12 Aligned_cols=213 Identities=22% Similarity=0.311 Sum_probs=179.7
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----
Q 018040 116 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL---- 189 (362)
Q Consensus 116 i~~~~l~~~y~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~---- 189 (362)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 358999999999999999999999999999999999999999999999999988876543
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCcC---C---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHH
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDPL---E---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 258 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~~---~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqr 258 (362)
|++||||||++.+|+. |++||+.+. . ... .+++.++++.+++.+.. .++.+.+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 3469999999999876 999998541 1 122 23456677777765421 2344567899999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhhcCeEEEEeCCEEEEecChhH
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTR 336 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~ 336 (362)
|||+|||||+++|++|||||||++||+.++..+.+.+++.. + ++|||+|||+++.+..||||++|++|++++.+++++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 99999999999999999999999999999999999998864 3 899999999999765599999999999999998877
Q ss_pred Hh
Q 018040 337 LL 338 (362)
Q Consensus 337 l~ 338 (362)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 22
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3e-54 Score=417.85 Aligned_cols=221 Identities=23% Similarity=0.291 Sum_probs=188.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC--CHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI--GLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~--~~~~~r~~ 192 (362)
.|+++|++++|++. ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .....+++
T Consensus 4 ~l~i~~ls~~y~~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECCE--EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 58999999999753 599999999999999999999999999999999999999999999999998321 12234678
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCCC---C----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLEE---Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
||||||++.+|+. ||+||+.+... . ..+++.++++.+++.+..++ ++.+|||||||||+||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR-----------YPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTS-----------CGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999999965 99999976421 1 13456778888877654443 4456799999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhh--cCCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||+.+|++||||||||+||+..+..+.+.+.+. ..+.|+|+||||++++.. ||||++|++|+|++.|++++++.++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 9999999999999999999999999999877654 358999999999999987 9999999999999999999999887
Q ss_pred CcHHHHH
Q 018040 342 SSSFAQL 348 (362)
Q Consensus 342 ~~~~~~~ 348 (362)
...|...
T Consensus 231 ~~~~~a~ 237 (359)
T 3fvq_A 231 ADLDAAL 237 (359)
T ss_dssp SCHHHHH
T ss_pred ccHHHHH
Confidence 6555443
No 23
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3e-54 Score=402.94 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=187.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~~ 192 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ......+|++
T Consensus 24 ~l~i~~l~~~y~~~--~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECCE--EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 59999999999653 5999999999999999999999999999999999999999999999999985 2334556778
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcC----CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
|+||||++.+|+. |++||+.+. .... .+++.++++.+++.+.. ++.+.+|||||||||+|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-----------HAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHHH
Confidence 9999999998876 999999652 1122 23466778887775443 33455689999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++++++
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999998864 48999999999999987 9999999999999999999998765
Q ss_pred CcHH
Q 018040 342 SSSF 345 (362)
Q Consensus 342 ~~~~ 345 (362)
...+
T Consensus 251 ~~~~ 254 (263)
T 2olj_A 251 QHER 254 (263)
T ss_dssp CSHH
T ss_pred ccHH
Confidence 4433
No 24
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-54 Score=397.66 Aligned_cols=214 Identities=20% Similarity=0.356 Sum_probs=183.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 193 (362)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ ++++
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 5999999999975 359999999999999999999999999999999999999999999999999987766554 4569
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCC--CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLE--EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
+|+||++.+|+. |++||+.+.. ... .+.+.++++.++ +++...++++.+||||||||++||||
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP----------RLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCH----------HHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcc----------cHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 999999999876 9999997532 111 122333444331 24445667788899999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|+++|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999998864 58999999999998876 999999999999999999998753
No 25
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.1e-54 Score=420.46 Aligned_cols=219 Identities=20% Similarity=0.290 Sum_probs=191.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.||
T Consensus 3 ~l~~~~l~~~yg~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECCE--EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 48999999999754 599999999999999999999999999999999999999999999999999877654 46799
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+. ||+||+.+.. ... .+++.++++.+++.+..+ +++.+|||||||||+||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------CCGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhHCCHHHHHHHHHHHH
Confidence 99999999975 9999997631 122 345677788887755433 4445679999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++||||||||+||+..+..+.+.|+++. + +.|+|+||||++++.. ||||++|++|+|++.|++++++..+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCcc
Confidence 999999999999999999999999999998864 3 8999999999999987 999999999999999999999988776
Q ss_pred HHHHH
Q 018040 344 SFAQL 348 (362)
Q Consensus 344 ~~~~~ 348 (362)
.|...
T Consensus 228 ~~v~~ 232 (381)
T 3rlf_A 228 RFVAG 232 (381)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66443
No 26
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.7e-54 Score=403.16 Aligned_cols=214 Identities=21% Similarity=0.265 Sum_probs=189.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++. ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 10 ~~l~~~~l~~~~~~~--~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQ--ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred ceEEEEeEEEEeCCe--eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 369999999999754 699999999999999999999999999999999999999999999999999988888888889
Q ss_pred EEEcCCCCCC-cccHHhhcCcCC-----CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 194 SIIPQDPTMF-EGSVHNNLDPLE-----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 194 ~~v~Q~~~l~-~~tv~enl~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+|++|++.++ +.|++||+.+.. ....+++.++++.+++.+..++ .+.+|||||||||+|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-----------DYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-----------BGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 9999999874 569999996532 1234567788888887654333 3345899999999999999
Q ss_pred cC------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 268 LK------KSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 268 ~~------~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
++ +|++|||||||+|||+.++..+.+.|+++. + ++|||+||||++.+.. ||||++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 999999999999999999999999998864 3 5799999999999987 9999999999999999999987
Q ss_pred hc
Q 018040 339 EN 340 (362)
Q Consensus 339 ~~ 340 (362)
+.
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 27
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-54 Score=401.61 Aligned_cols=218 Identities=27% Similarity=0.382 Sum_probs=187.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----------C
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----------I 184 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----------~ 184 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 6 ~l~i~~l~~~y~~~--~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCE--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 59999999999753 59999999999999999999999999999999999999999999999999851 3
Q ss_pred CH---HHHhcCcEEEcCCCCCCcc-cHHhhcCcC----CCCC----HHHHHHHHHHcCCChH-HHhccccchhhhccCCC
Q 018040 185 GL---HDLRSRLSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNE-VRKNEGKLESRVTENGE 251 (362)
Q Consensus 185 ~~---~~~r~~i~~v~Q~~~l~~~-tv~enl~~~----~~~~----~~~~~~~l~~~~l~~~-~~~~~~~l~~~~~~~g~ 251 (362)
+. ..+|+++|||||++.+|+. |++||+.+. .... .+++.++++.+++.+. .++ .+.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-----------YPV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS-----------CGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC-----------Ccc
Confidence 33 3456789999999988876 999999652 1122 2456778888888665 443 344
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEE
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIE 329 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~ 329 (362)
+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 579999999999999999999999999999999999999999998764 48999999999999986 9999999999999
Q ss_pred EecChhHHhhcCCcHH
Q 018040 330 EFDSPTRLLENKSSSF 345 (362)
Q Consensus 330 ~~g~~~~l~~~~~~~~ 345 (362)
+.|+++++++++...+
T Consensus 233 ~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 233 EEGDPEQVFGNPQSPR 248 (262)
T ss_dssp EEECHHHHHHSCCSHH
T ss_pred EeCCHHHHHhCcchHH
Confidence 9999999987654443
No 28
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-53 Score=396.89 Aligned_cols=214 Identities=22% Similarity=0.403 Sum_probs=186.2
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.+.|+++||+++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++
T Consensus 13 ~~~l~i~~l~~~y~~~--~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp -CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCeEEEEEEEEEECCE--EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 4579999999999643 69999999999999999999999999999999999999999999999999865 44567888
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
|||+||++.+|+. |++||+.+.. ... .+++.++++.+++.+..+ +++.+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999998876 9999996531 112 235667788887755433 33456899999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhc
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||+++|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. |||+++|++|++++.|+++++.+.
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999998864 57999999999999987 999999999999999999998754
No 29
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-53 Score=411.74 Aligned_cols=217 Identities=20% Similarity=0.347 Sum_probs=189.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 48999999999753 599999999999999999999999999999999999999999999999999876643 57899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+. |++||+.+... .. ++++.++++.+++.+..++ .+.+|||||||||+||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----------KPTQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999875 99999976422 11 2457778888887654444 345679999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++||||||||+||+.+++.+.+.|++.. .+.|+|+||||++.+.. ||||++|++|+|++.|+++++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 227 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN 227 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 999999999999999999999999999998764 37899999999999876 999999999999999999999987665
Q ss_pred HHH
Q 018040 344 SFA 346 (362)
Q Consensus 344 ~~~ 346 (362)
.|.
T Consensus 228 ~~~ 230 (359)
T 2yyz_A 228 MFV 230 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 30
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-53 Score=398.07 Aligned_cols=209 Identities=23% Similarity=0.259 Sum_probs=181.2
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcCc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRL 193 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i 193 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+.+
T Consensus 7 ~l~i~~l~~~y~~~--~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECCE--eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 59999999999753 599999999999999999999999999999999999999999999999999776543 356789
Q ss_pred EEEcCCCCCCc-ccHHhhcCcCC-----C-----------CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCC
Q 018040 194 SIIPQDPTMFE-GSVHNNLDPLE-----E-----------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 252 (362)
Q Consensus 194 ~~v~Q~~~l~~-~tv~enl~~~~-----~-----------~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~ 252 (362)
+||||++.+|+ .|++||+.+.. . .. .+++.++++.+++.+. .++.+.+
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~ 153 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKAGE 153 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGGG
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-----------hCCCchh
Confidence 99999998886 59999996531 1 11 2345666777766443 3444566
Q ss_pred CChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 018040 253 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 253 LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
|||||||||+|||||+++|++|||||||++||+.+++.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999998864 48999999999999876 99999999999999
Q ss_pred ecChhH
Q 018040 331 FDSPTR 336 (362)
Q Consensus 331 ~g~~~~ 336 (362)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999998
No 31
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.6e-53 Score=411.29 Aligned_cols=217 Identities=25% Similarity=0.399 Sum_probs=188.8
Q ss_pred ccEEEEEEEEEe-CCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 114 GEVDIHGLQVRY-APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 114 ~~i~~~~l~~~y-~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
..|+++|++++| ++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++
T Consensus 13 ~~l~~~~l~~~y~g~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGA--RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTTST--TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcCCC--EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 469999999999 543 59999999999999999999999999999999999999999999999999976553 4678
Q ss_pred cEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH
Q 018040 193 LSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 264 (362)
Q Consensus 193 i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA 264 (362)
||||||++.+|+. ||+||+.+.. ... ++++.++++.+++.+..++ .+.+|||||||||+||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANR-----------FPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHH
Confidence 9999999999875 9999997531 112 3456778888887654443 3456799999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 265 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 265 ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
|||+.+|++||||||||+||+.+++.+.+.|++.. .+.|+|+||||++.+.. ||||++|++|+|++.|+++++++++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999998764 27999999999999887 9999999999999999999999876
Q ss_pred CcHH
Q 018040 342 SSSF 345 (362)
Q Consensus 342 ~~~~ 345 (362)
...|
T Consensus 238 ~~~~ 241 (355)
T 1z47_A 238 GTLF 241 (355)
T ss_dssp SSHH
T ss_pred cchH
Confidence 5554
No 32
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.9e-53 Score=388.89 Aligned_cols=206 Identities=20% Similarity=0.245 Sum_probs=177.4
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh-
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR- 190 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r- 190 (362)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..+ +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 5899999999975 36999999999999999999999999999999999999999999999999998766543 33
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
++|+||||++.+|+. |++||+.+.. ... .+++.++++.+++.+.. +..+.+|||||||||+
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 679999999988864 9999996521 111 34566777877765433 3344568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
|||||+.+|++|||||||++||+.+++.+.+.+++.. +++|||++||+++.+..||+|++|++|++++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998864 5899999999999885599999999999999885
No 33
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.9e-53 Score=411.56 Aligned_cols=219 Identities=19% Similarity=0.285 Sum_probs=188.3
Q ss_pred cEEEEEEEEEeCCCCCc--eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHH
Q 018040 115 EVDIHGLQVRYAPHLPL--VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~--vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~ 189 (362)
.|+++|++++|++. + +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....
T Consensus 3 ~l~i~~l~~~y~~~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECCE--eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 48999999999653 5 999999999999999999999999999999999999999999999999986511 2234
Q ss_pred hcCcEEEcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 190 RSRLSIIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+++||||||++.+|+. ||+||+.+... .. .+++.++++.+++.+..++ .+.+|||||||||
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHH
Confidence 6789999999999975 99999976321 22 3456778888887654443 3456799999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 338 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~ 338 (362)
+|||||+.+|++||||||||+||+.++..+.+.|++.. .++|+|+||||++.+.. ||||++|++|+|++.|++++++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998764 37999999999999887 9999999999999999999999
Q ss_pred hcCCcHHH
Q 018040 339 ENKSSSFA 346 (362)
Q Consensus 339 ~~~~~~~~ 346 (362)
+++...|.
T Consensus 230 ~~p~~~~~ 237 (353)
T 1oxx_K 230 DNPVSIQV 237 (353)
T ss_dssp HSCSSHHH
T ss_pred hCcccHHH
Confidence 87655543
No 34
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.3e-53 Score=411.79 Aligned_cols=217 Identities=22% Similarity=0.337 Sum_probs=188.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGNF--TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSSS--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECCE--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 48999999999653 599999999999999999999999999999999999999999999999999876643 56899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+. ||+||+.+.. ... .+++.++++.+++.+..++ .+.+|||||||||+||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-----------YPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999975 9999997531 122 3456778888887654433 345679999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++||||||||+||+.++..+.+.|++.. .+.|+|+||||++.+.. ||||++|++|+|++.|+++++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~ 227 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 999999999999999999999999999998864 27999999999999876 999999999999999999999987665
Q ss_pred HHH
Q 018040 344 SFA 346 (362)
Q Consensus 344 ~~~ 346 (362)
.|.
T Consensus 228 ~~~ 230 (362)
T 2it1_A 228 KFV 230 (362)
T ss_dssp HHH
T ss_pred hHH
Confidence 553
No 35
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=8e-53 Score=410.50 Aligned_cols=217 Identities=22% Similarity=0.336 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||
T Consensus 11 ~l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 59999999999753 599999999999999999999999999999999999999999999999999876643 57899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC---CC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
||||++.+|+. ||+||+.+... .. .+++.++++.+++.+. .++++.+|||||||||+||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHH
Confidence 99999999865 99999976422 22 2356677887776543 344556789999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCc
Q 018040 267 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 267 l~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~ 343 (362)
|+.+|++||||||||+||+.+++.+.+.|+++. + +.|+|+||||++.+.. ||||++|++|+|++.|++++++.++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 999999999999999999999999999998764 2 7899999999999876 999999999999999999999987665
Q ss_pred HHH
Q 018040 344 SFA 346 (362)
Q Consensus 344 ~~~ 346 (362)
.|.
T Consensus 236 ~~~ 238 (372)
T 1v43_A 236 VFV 238 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 36
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8.9e-53 Score=393.98 Aligned_cols=213 Identities=23% Similarity=0.292 Sum_probs=184.8
Q ss_pred cEEEEEEEEEeC-CCC--CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 018040 115 EVDIHGLQVRYA-PHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~-~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 191 (362)
.++++|++++|+ ++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 389999999997 221 3599999999999999999999999999999999999999999999999988532 5678
Q ss_pred CcEEEcCCC--CCCcccHHhhcCcCC------CCCHHHHHHHHHHcCCC--hHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 192 RLSIIPQDP--TMFEGSVHNNLDPLE------EYADEEIWEALDKCQLG--NEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 192 ~i~~v~Q~~--~l~~~tv~enl~~~~------~~~~~~~~~~l~~~~l~--~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+|+||||++ .++..|++||+.+.. ....+++.++++.+++. +..++. +.+|||||||||
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~~~LSgGq~qRv 147 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV-----------PFFLSGGEKRRV 147 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCC-----------GGGSCHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCC-----------hhhCCHHHHHHH
Confidence 899999996 456679999996532 12246678889999887 554443 345799999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+|||||+++|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++++
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998864 58999999999999987 99999999999999999999976
Q ss_pred cC
Q 018040 340 NK 341 (362)
Q Consensus 340 ~~ 341 (362)
.+
T Consensus 228 ~~ 229 (266)
T 2yz2_A 228 KY 229 (266)
T ss_dssp HS
T ss_pred Cc
Confidence 53
No 37
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=9.3e-53 Score=406.89 Aligned_cols=214 Identities=22% Similarity=0.341 Sum_probs=187.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++ . +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++|||
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999964 3 9999999999999999999999999999999999999999999999999976553 4678999
Q ss_pred EcCCCCCCcc-cHHhhcCcCC----CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 196 IPQDPTMFEG-SVHNNLDPLE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
|||++.+|+. ||+||+.+.. ...++++.++++.+++.+..++ .+.+|||||||||+|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999975 9999997531 1122677888888887654443 3456799999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcCCcHH
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
|++||||||||+||+.+++.+.+.|++.. .+.|+|+||||++.+.. ||||++|++|++++.|+++++++++...|
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 99999999999999999999999998864 37999999999999877 99999999999999999999998765545
No 38
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-53 Score=389.50 Aligned_cols=208 Identities=25% Similarity=0.328 Sum_probs=180.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
++++|++++|++ +|+|+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++|||
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999963 69999999999 999999999999999999999999999999999999986533 34678999
Q ss_pred EcCCCCCCcc-cHHhhcCcCCCC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 196 IPQDPTMFEG-SVHNNLDPLEEY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 196 v~Q~~~l~~~-tv~enl~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+||++.+|+. |++||+.+.... ..+++.++++.+++.+.. ++.+.+||||||||++|||||++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 9999998876 999999764321 134566677777765433 33445689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhhcC
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~~~ 341 (362)
+|++|||||||++||+.+++.+.+.+++.. .++|||++||+++.+.. ||||++|++|++++.|+++++++++
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999998864 37999999999999876 9999999999999999999998764
No 39
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.4e-53 Score=398.42 Aligned_cols=214 Identities=20% Similarity=0.234 Sum_probs=183.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRS 191 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~ 191 (362)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 20 ~~l~~~~l~~~y~~~--~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred ceEEEEeEEEEECCE--EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 359999999999753 5999999999999999999999999999999999999999999999999987 666677888
Q ss_pred CcEEEcCCCCC-Ccc--cHHhhcCcCCC--------CC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 192 RLSIIPQDPTM-FEG--SVHNNLDPLEE--------YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 192 ~i~~v~Q~~~l-~~~--tv~enl~~~~~--------~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
+|+||||++.+ +.. |++||+.+... .. .+++.++++.+++.+.. ++++.+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHH
Confidence 99999999864 443 99999975321 11 23456677777765433 33455689999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceE--EEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 018040 258 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTV--ITIAHRITSVID-SDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 258 rQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tv--i~itH~l~~~~~-~Dri~vl~~G~i~~~g~ 333 (362)
||||+|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|| |+|||+++.+.. ||||++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999998764 37899 999999999876 99999999999999999
Q ss_pred hhHHhhc
Q 018040 334 PTRLLEN 340 (362)
Q Consensus 334 ~~~l~~~ 340 (362)
++++.++
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998653
No 40
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-52 Score=409.95 Aligned_cols=216 Identities=19% Similarity=0.318 Sum_probs=187.0
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC------CCHHH
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS------IGLHD 188 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~------~~~~~ 188 (362)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+.
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 48999999999653 59999999999999999999999999999999999999999999999999865 443
Q ss_pred HhcCcEEEcCCCCCCc-ccHHhhcCcCC---CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 189 LRSRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 189 ~r~~i~~v~Q~~~l~~-~tv~enl~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
.+++||||||++.+|+ .|++||+.+.. ... .+++.++++.+++.+..+ +.+.+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CCcccCCHHHHHH
Confidence 3578999999999986 49999997631 122 245667788887755443 3445689999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
|+|||||+.+|++||||||||+||+.+++.+.+.|++.. .+.|+|+||||++.+.. ||||++|++|++++.|+++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998764 37899999999999887 999999999999999999999
Q ss_pred hhcCCcHH
Q 018040 338 LENKSSSF 345 (362)
Q Consensus 338 ~~~~~~~~ 345 (362)
++++...|
T Consensus 228 ~~~p~~~~ 235 (372)
T 1g29_1 228 YDKPANTF 235 (372)
T ss_dssp HHSCSBHH
T ss_pred HhCcccHH
Confidence 98766555
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.6e-52 Score=384.29 Aligned_cols=207 Identities=20% Similarity=0.248 Sum_probs=184.3
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+...++++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 4899999986 3899999999999999999999999999999999999999 99999999998777777888899
Q ss_pred EEcCCCCCCcc-cHHhhcCcCCC--CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 195 IIPQDPTMFEG-SVHNNLDPLEE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 195 ~v~Q~~~l~~~-tv~enl~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
|+||++.+|.. |++||+.+... ...+++.++++.+++.+..+ +.+.+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999988865 99999976421 13667788888888765433 344568999999999999999999
Q ss_pred C-------EEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 272 K-------VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 272 ~-------illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
+ +|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999998864 58999999999999976 99999999999999999999865
No 42
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.8e-52 Score=385.64 Aligned_cols=209 Identities=20% Similarity=0.238 Sum_probs=173.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHH-hc
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-RS 191 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-r~ 191 (362)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 4899999999975 3699999999999999999999999999999999999 88999999999999987776554 45
Q ss_pred CcEEEcCCCCCCcc-cHHhhcCcCC----C--CC----HHHHHHHHHHcCCC-hHHHhccccchhhhccCCCC-CChhHH
Q 018040 192 RLSIIPQDPTMFEG-SVHNNLDPLE----E--YA----DEEIWEALDKCQLG-NEVRKNEGKLESRVTENGEN-WSMGQR 258 (362)
Q Consensus 192 ~i~~v~Q~~~l~~~-tv~enl~~~~----~--~~----~~~~~~~l~~~~l~-~~~~~~~~~l~~~~~~~g~~-LSgGqr 258 (362)
.++|+||++.+|+. |+++|+.+.. . .. .+++.++++.+++. +. ......+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY-----------LSRYLNEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG-----------GGSBTTCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH-----------hcCCcccCCCHHHH
Confidence 69999999998875 9999986421 1 11 23456677777663 22 2333455 899999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEecChh
Q 018040 259 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDSPT 335 (362)
Q Consensus 259 QRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~g~~~ 335 (362)
||++|||||+++|++|||||||++||+.+++.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999998874 47999999999999886 4999999999999999987
Q ss_pred H
Q 018040 336 R 336 (362)
Q Consensus 336 ~ 336 (362)
.
T Consensus 230 ~ 230 (250)
T 2d2e_A 230 L 230 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.3e-51 Score=390.27 Aligned_cols=209 Identities=22% Similarity=0.351 Sum_probs=174.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.++++|+++.+ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 469999999864 2599999999999999999999999999999999999999999999988 49
Q ss_pred EEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE
Q 018040 194 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 273 (362)
Q Consensus 194 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i 273 (362)
+|+||++.+|+.|++||+. ..........++++.+++.+.+..++.++++.+++++.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999899999997 323334455667788898888888888888889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhc
Q 018040 274 LVLDEATASVDTATDNLIQHTL-GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 274 llLDEPts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~ 340 (362)
|||||||++||+.++..+.+.+ ++..+++|||++||+++.+..||+|++|++|++++.|++++++..
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 9999999999999999999874 444468999999999998877999999999999999999998753
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4.5e-51 Score=382.57 Aligned_cols=213 Identities=22% Similarity=0.250 Sum_probs=178.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHH-h
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-R 190 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-r 190 (362)
..++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +
T Consensus 19 ~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 19 HMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp -CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred ceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 36999999999964 3699999999999999999999999999999999999 47899999999999977765554 4
Q ss_pred cCcEEEcCCCCCCcc-cHHhhcCcCC----------CCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCC-CCC
Q 018040 191 SRLSIIPQDPTMFEG-SVHNNLDPLE----------EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE-NWS 254 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~-tv~enl~~~~----------~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~-~LS 254 (362)
+.++|+||++.+|+. |+.+|+.+.. ... .+++.++++.+++.+. ....... +||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~~LS 166 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED----------LLTRSVNVGFS 166 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT----------TTTSBTTTTCC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh----------HhcCCcccCCC
Confidence 469999999998875 8998875311 111 2345566777766421 1223333 499
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh--cCeEEEEeCCEEEEe
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEF 331 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~Dri~vl~~G~i~~~ 331 (362)
|||||||+|||||+++|++|||||||++||+.+++.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998864 47999999999999875 899999999999999
Q ss_pred cChhHHh
Q 018040 332 DSPTRLL 338 (362)
Q Consensus 332 g~~~~l~ 338 (362)
|+++++.
T Consensus 247 g~~~~~~ 253 (267)
T 2zu0_C 247 GDFTLVK 253 (267)
T ss_dssp ECTTHHH
T ss_pred cCHHHHh
Confidence 9998874
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6e-51 Score=380.64 Aligned_cols=206 Identities=22% Similarity=0.305 Sum_probs=180.2
Q ss_pred EEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
++++|++++|++. ..++|+++||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1359999999999 9999999999999999999999999 9999999999998654 23 6789
Q ss_pred E-EEcCCCCCCcccHHhhcCcCC---CCCHHHHHHHHHHcCCC-hHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 194 S-IIPQDPTMFEGSVHNNLDPLE---EYADEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 194 ~-~v~Q~~~l~~~tv~enl~~~~---~~~~~~~~~~l~~~~l~-~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
+ |+||++.+ ..|++||+.+.. ....+++.++++.+++. +. .++++.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999988 889999997532 33466778888888775 43 33445568999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cC-eEEEEeCCEEEEecChhHHhhc
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SD-MVLLLSYGLIEEFDSPTRLLEN 340 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~D-ri~vl~~G~i~~~g~~~~l~~~ 340 (362)
++|++|||||||++||+.+++.+.+.|++..+ |+|++||+++.+.. || ++++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999988754 99999999999876 99 9999999999999999998753
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-50 Score=377.13 Aligned_cols=200 Identities=25% Similarity=0.334 Sum_probs=172.8
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 48999999999722 3699999999999999999999999999999999999999999998 246799
Q ss_pred EEcCCCCCC-cccHHhhcCcCCC--------CC---HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHH
Q 018040 195 IIPQDPTMF-EGSVHNNLDPLEE--------YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 262 (362)
Q Consensus 195 ~v~Q~~~l~-~~tv~enl~~~~~--------~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~ 262 (362)
|+||++.++ ..|++||+.+... .. .+++.++++.+++.+..+ +.+.+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHH
Confidence 999999887 4599999975321 11 245677888887755433 334568999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 263 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 263 iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|||||+++|++|||||||++||+.+++.+.+.|++.. + ++|||++||+++.+.. ||||++|++|+ ++.|+++++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999999999999998864 3 7999999999999976 99999999999 99999999864
Q ss_pred c
Q 018040 340 N 340 (362)
Q Consensus 340 ~ 340 (362)
.
T Consensus 218 ~ 218 (253)
T 2nq2_C 218 S 218 (253)
T ss_dssp H
T ss_pred c
Confidence 3
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-49 Score=360.21 Aligned_cols=194 Identities=23% Similarity=0.348 Sum_probs=166.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..|+++|++++|++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 36999999999964 5999999999999999999999999999999999999999999999999875 357789
Q ss_pred EEEcCCCCCCcc-cHHhhcCcC----C-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPL----E-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~----~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+|+||++.+|+. |++||+.+. . ....+++.++++.+++.+. ++.+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHHH
Confidence 999999998876 999999652 1 2235667788888877543 334556899999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 268 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 268 ~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
+++|++|||||||++||+.+++.+.+.+++.. +++|||++||+++.+.. ||+|++ ..|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 99999999999999999999999999998764 47899999999999988 777764 45665
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.7e-42 Score=348.15 Aligned_cols=199 Identities=23% Similarity=0.267 Sum_probs=166.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+|
T Consensus 286 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred eEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 35999999999964 3799999999999999999999999999999999999999999975 2369
Q ss_pred EEEcCCCCCC-cccHHhhcCcC--CC-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDPTMF-EGSVHNNLDPL--EE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~~l~-~~tv~enl~~~--~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|+||++..+ ..|+.+++... .. ...+.+.++++.+++. ....+.+.+|||||||||+|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-----------DLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-----------GGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 9999998764 56998887532 01 1223344455545443 33445556789999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLLE 339 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~--G~i~~~g~~~~l~~ 339 (362)
+|++|||||||++||+.++..+.+.|+++. .+.|||+||||++.+.. ||||++|++ |+++..|+|++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998864 48999999999999987 999999996 78889999998875
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.4e-41 Score=350.74 Aligned_cols=199 Identities=24% Similarity=0.282 Sum_probs=168.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+ +.++
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 35999999999965 3799999999999999999999999999999999999999999975 2369
Q ss_pred EEEcCCCCCC-cccHHhhcCcC-C-C-CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDPTMF-EGSVHNNLDPL-E-E-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~~l~-~~tv~enl~~~-~-~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|+||++.++ ..|+.+|+... . . ...+.+.++++.+++.+. ..+...+|||||||||+|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-----------YDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHh
Confidence 9999998764 56999987542 1 1 123445566777766433 233445689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLLE 339 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~--G~i~~~g~~~~l~~ 339 (362)
+|++|||||||++||+.++..+.+.|+++. .++|||+||||++.+.. ||||++|++ |++...|+|++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999998863 58999999999999987 999999996 88888999998875
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.7e-41 Score=340.67 Aligned_cols=199 Identities=19% Similarity=0.226 Sum_probs=164.9
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..++++|++++|++ ..|+.+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 35899999999975 368899999999999999999999999999999999999999999765 358
Q ss_pred EEEcCCCCC-CcccHHhhcCcCC-C---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc
Q 018040 194 SIIPQDPTM-FEGSVHNNLDPLE-E---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 268 (362)
Q Consensus 194 ~~v~Q~~~l-~~~tv~enl~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~ 268 (362)
+|+||+... +..|+++|+.... . .....+.++++.+++. ....+.+.+|||||||||+|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-----------RLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-----------GCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999764 3569999985421 1 1223344555555543 3344556678999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHh
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLL 338 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~--G~i~~~g~~~~l~ 338 (362)
++|++|||||||++||+.++..+.+.|+++. .++|||+||||++.+.. ||||++|++ |.+...+++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999998864 47899999999999987 999999996 5666777776654
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.1e-40 Score=349.16 Aligned_cols=197 Identities=21% Similarity=0.257 Sum_probs=151.9
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcE
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 194 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 194 (362)
.++++|++|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|. .+++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 59999999999754346899999999999999999999999999999999999999999999862 1355
Q ss_pred EEcCCCCC-----Ccc----------------------------------------------------------------
Q 018040 195 IIPQDPTM-----FEG---------------------------------------------------------------- 205 (362)
Q Consensus 195 ~v~Q~~~l-----~~~---------------------------------------------------------------- 205 (362)
|++|++.. ...
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 55554310 001
Q ss_pred --cHHhhcCcC------------------------------------------CCCCHHHHHHHHHHcCCChHHHhcccc
Q 018040 206 --SVHNNLDPL------------------------------------------EEYADEEIWEALDKCQLGNEVRKNEGK 241 (362)
Q Consensus 206 --tv~enl~~~------------------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 241 (362)
|++||+.+. .....+++.+.++.+++.....
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~----- 894 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV----- 894 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH-----
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh-----
Confidence 122222210 0112344556666666643210
Q ss_pred chhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeE
Q 018040 242 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 320 (362)
Q Consensus 242 l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri 320 (362)
.+..+.+|||||||||+|||||+++|++|||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||||
T Consensus 895 ----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 895 ----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp ----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEE
T ss_pred ----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEE
Confidence 13344568999999999999999999999999999999999999999999765 5699999999999987 9999
Q ss_pred EEEeCCEEEEecC
Q 018040 321 LLLSYGLIEEFDS 333 (362)
Q Consensus 321 ~vl~~G~i~~~g~ 333 (362)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987664
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.7e-40 Score=338.28 Aligned_cols=197 Identities=22% Similarity=0.287 Sum_probs=158.2
Q ss_pred cEEE--------EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE---------EEC
Q 018040 115 EVDI--------HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI---------AID 177 (362)
Q Consensus 115 ~i~~--------~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I---------~i~ 177 (362)
.|++ +|++++|++.. .+|+++| ++++||+++|+||||||||||+++|+|+++|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCCC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 4888 89999997542 4899999 999999999999999999999999999999999995 345
Q ss_pred CEeCCCCCHH--HHhcCcEEEcCCCC----CCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCC
Q 018040 178 GIDISSIGLH--DLRSRLSIIPQDPT----MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 251 (362)
Q Consensus 178 g~~i~~~~~~--~~r~~i~~v~Q~~~----l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~ 251 (362)
|.++...... ..+..+++++|... ++.+|+.+|+.... ..+++.++++.+++.+..++ ...
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~~~~-----------~~~ 227 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLDR-----------ELH 227 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTGGGS-----------BGG
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCchhCC-----------Chh
Confidence 6443221111 11345889999753 33458999885421 12346778888887654333 334
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
+|||||||||+|||||+++|++|||||||++||+.++..+.+.|+++. +++|||+||||++.+.. ||||++|+++
T Consensus 228 ~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 589999999999999999999999999999999999999999998764 48999999999999887 9999999865
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-39 Score=332.74 Aligned_cols=197 Identities=18% Similarity=0.233 Sum_probs=164.3
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 119 HGLQVRYAPHLPLVLRGLTCTFLGG-----MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl~i~~G-----e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
++++++|++.. .+++++||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~~-~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSLK-KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCEE-EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCcc-cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 56788887532 4799999999999 7899999999999999999999999999962 11 2469
Q ss_pred EEEcCCCCC-CcccHHhhcCc--CC-CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDPTM-FEGSVHNNLDP--LE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~~l-~~~tv~enl~~--~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|+||+... |+.|+++|+.. .. ....+...++++.+++.+ .....+.+|||||||||+|||||++
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-----------IIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-----------TSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999754 56799998742 11 123445566777776643 3344567799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHhhc
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLLEN 340 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~--G~i~~~g~~~~l~~~ 340 (362)
+|++|||||||++||+.++..+.+.|+++. .++|||+||||++.+.. ||||++|++ |+++..|+|+++++.
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999998763 48999999999999987 999999997 899999999999875
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.4e-40 Score=334.25 Aligned_cols=196 Identities=22% Similarity=0.262 Sum_probs=153.4
Q ss_pred EEE-EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE---------EECCEeCCCCC
Q 018040 116 VDI-HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI---------AIDGIDISSIG 185 (362)
Q Consensus 116 i~~-~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I---------~i~g~~i~~~~ 185 (362)
.++ +|++++|++. ..+|+++| +|++||+++|+||||||||||+++|+|+++|++|++ .++|.++....
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 455 5899999754 24899999 999999999999999999999999999999999995 34554432111
Q ss_pred HHH--HhcCcEEEcCCCCCC----cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 186 LHD--LRSRLSIIPQDPTMF----EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 186 ~~~--~r~~i~~v~Q~~~l~----~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
... .+..+++++|....+ .+|+.+|+.... ..+++.++++.+++.+..+ ....+|||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~-----------~~~~~LSgGekQ 165 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVLE-----------REIQHLSGGELQ 165 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTT-----------SBGGGCCHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhh-----------CChhhCCHHHHH
Confidence 111 124589999976443 348888874311 1234667888888754332 234458999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCC
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYG 326 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G 326 (362)
||+|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|||+||||++.+.. ||||++|++|
T Consensus 166 Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999998764 58999999999999987 9999999865
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=6.1e-39 Score=335.92 Aligned_cols=201 Identities=21% Similarity=0.259 Sum_probs=137.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHHcCCCCC-------ccEEEECCEeCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLI---------------------QTLFRIVEPT-------AGLIAIDGIDIS 182 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl---------------------~~l~gl~~p~-------~G~I~i~g~~i~ 182 (362)
.+|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 589999999999999999999999999998 8999999998 455666665543
Q ss_pred CCCHHHHhcCcEEEcCCCCCC--------------------cccHHhhcCcCCCCC--H--HHH-----------HHHHH
Q 018040 183 SIGLHDLRSRLSIIPQDPTMF--------------------EGSVHNNLDPLEEYA--D--EEI-----------WEALD 227 (362)
Q Consensus 183 ~~~~~~~r~~i~~v~Q~~~l~--------------------~~tv~enl~~~~~~~--~--~~~-----------~~~l~ 227 (362)
.. .++.+++|+|.+.++ ..|++||+.+..... . .+. .+.++
T Consensus 112 ~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 112 RN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred cc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 21 244566666654322 348889986532110 0 000 01133
Q ss_pred HcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceE
Q 018040 228 KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASVDTATDNLIQHTLGQHF-SDCTV 304 (362)
Q Consensus 228 ~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~LD~~~~~~i~~~l~~~~-~~~tv 304 (362)
.+++.+. ..++.+.+|||||||||+|||||+++|+ +|||||||++||+.+...+.+.|+++. ++.||
T Consensus 188 ~~gL~~~----------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tv 257 (670)
T 3ux8_A 188 NVGLDYL----------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 257 (670)
T ss_dssp HTTCTTC----------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEE
T ss_pred HcCCchh----------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 3333211 1344566799999999999999999998 999999999999999999999998764 57999
Q ss_pred EEEecChhhhhhcCeEEEE------eCCEEEEecChhHHhhcCCcHH
Q 018040 305 ITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKSSSF 345 (362)
Q Consensus 305 i~itH~l~~~~~~Dri~vl------~~G~i~~~g~~~~l~~~~~~~~ 345 (362)
|+||||++.+..||||++| ++|++++.|+++++.+.+...+
T Consensus 258 i~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~ 304 (670)
T 3ux8_A 258 IVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLT 304 (670)
T ss_dssp EEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHH
T ss_pred EEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHH
Confidence 9999999988779999999 8999999999999987654333
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.3e-37 Score=330.60 Aligned_cols=196 Identities=21% Similarity=0.261 Sum_probs=162.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
..+...|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+| |+| +|.+... +.++
T Consensus 434 ~~L~~~~ls~~yg~~--~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECCE--EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 358888999999753 59999999999999999999999999999999996 554 4543311 1247
Q ss_pred EEEcCCC-CCC-cccHHhhcCcC-CCCCHHHHHHHHHHcCCC-hHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 194 SIIPQDP-TMF-EGSVHNNLDPL-EEYADEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 194 ~~v~Q~~-~l~-~~tv~enl~~~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
+|++|++ .++ ..|+.+|+.+. ... .+++.++++.+++. +..++. ..+||||||||++|||||+.
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHHHT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHHhc
Confidence 8999985 444 45999998641 112 67788899999885 333333 34579999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLLE 339 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~-~~g~~~~l~~ 339 (362)
+|++|||||||++||+.+++.+.+.|++ .++|+|+||||++.+.. ||||++|++|+++ ..|+++++..
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999988 58999999999999987 9999999999997 5899998865
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.5e-38 Score=332.92 Aligned_cols=209 Identities=23% Similarity=0.286 Sum_probs=151.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------------cCCCCCccEEEECCEeCCCCCHH
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF----------------------RIVEPTAGLIAIDGIDISSIGLH 187 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----------------------gl~~p~~G~I~i~g~~i~~~~~~ 187 (362)
..+|+||||+|++||+++|+||||||||||+++|+ |+.. ..|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998764 3333 356899999887543311
Q ss_pred HHh-----------------------------------------cCcEEEcCCCCCC-----------------------
Q 018040 188 DLR-----------------------------------------SRLSIIPQDPTMF----------------------- 203 (362)
Q Consensus 188 ~~r-----------------------------------------~~i~~v~Q~~~l~----------------------- 203 (362)
... ...|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 100 0123333333222
Q ss_pred ----------cccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC-
Q 018040 204 ----------EGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS- 271 (362)
Q Consensus 204 ----------~~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p- 271 (362)
..|+.+|+.+..... .++..+.+..+++.. ...++.+.+|||||||||+|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 236666765543221 123344555555421 1235566789999999999999999887
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCCEEEEecChhHHhhcCC
Q 018040 272 --KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 272 --~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G~i~~~g~~~~l~~~~~ 342 (362)
++|||||||++||+.+...+.+.|+++. +++|||+||||++.+..||||++| ++|+|++.|+++++.+.+.
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~ 643 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 643 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCc
Confidence 5999999999999999999999998764 589999999999988779999999 8999999999999987644
Q ss_pred cHHHHHH
Q 018040 343 SSFAQLV 349 (362)
Q Consensus 343 ~~~~~~~ 349 (362)
.....++
T Consensus 644 ~~~~~~~ 650 (670)
T 3ux8_A 644 SHTGRYL 650 (670)
T ss_dssp CHHHHHH
T ss_pred cHHHHHH
Confidence 4333333
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=319.40 Aligned_cols=196 Identities=22% Similarity=0.240 Sum_probs=146.3
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEeCCCCCHHH
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-----------IDGIDISSIGLHD 188 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~~~ 188 (362)
|++++|+... ..|++++ ++++||++||+||||||||||+++|+|+++|++|+|. +.|.++.......
T Consensus 82 ~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 4578897653 4778777 6899999999999999999999999999999999982 3332221111111
Q ss_pred HhcCc--EEEcCCCCCC----c---ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 189 LRSRL--SIIPQDPTMF----E---GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 189 ~r~~i--~~v~Q~~~l~----~---~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
+.+.+ .+.+|....+ . .++.+++........+++.++++.+++.+. ..+...+|||||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGe~Q 228 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV-----------LKRDIEKLSGGELQ 228 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGG-----------GGSCTTTCCHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcch-----------hCCChHHCCHHHHH
Confidence 22222 3344432211 1 134444432223345677788888876543 34445678999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhh-cCeEEEEeCCEE
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~Dri~vl~~G~i 328 (362)
||+|||||+++|++||||||||+||+.+...+.+.++++. +++|||+||||++.+.. ||||++|++|..
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 9999999999999999999999999999999999999865 47999999999999988 999999998753
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-37 Score=317.48 Aligned_cols=192 Identities=16% Similarity=0.223 Sum_probs=146.1
Q ss_pred EEEEEeCCCCCceeeeeeEE-EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-----------EECCEeCCCCCHH
Q 018040 120 GLQVRYAPHLPLVLRGLTCT-FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-----------AIDGIDISSIGLH 187 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~-i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-----------~i~g~~i~~~~~~ 187 (362)
+.+.+|+.+. ++-..+. .++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 4 ~~~~~~~~~~---f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 4 EVIHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CEEEESSTTS---CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCceecCCCc---eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 4678898663 4444444 45999999999999999999999999999999998 5677655322111
Q ss_pred HHhc--CcEE----EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 188 DLRS--RLSI----IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 188 ~~r~--~i~~----v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
.... .+.. ++|.+.++.+++++++.... ..+++.++++.+++....+ ....+|||||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWN-----------KDANILSGGGLQRL 147 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 1111 2333 34444455668887764211 1234567778887754332 33456899999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 262 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 262 ~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
+|||||+++|++||||||||+||+.+...+.+.|+++.+++|||+||||++.+.. ||+|++|++|.
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999987778999999999999988 99999998754
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-35 Score=317.47 Aligned_cols=203 Identities=23% Similarity=0.317 Sum_probs=149.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHHcCCCCC------cc------EEEECCEeCCCCCH---
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLI---------QTLFRIVEPT------AG------LIAIDGIDISSIGL--- 186 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl---------~~l~gl~~p~------~G------~I~i~g~~i~~~~~--- 186 (362)
..|+||||+|++|++++|+|+||||||||+ +.+.+...+. +| .+.++..++...+.
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 3444443332 22 35556555532211
Q ss_pred H-------HH-------------------------------hcCcEEEcCCCCCCcc-----------------------
Q 018040 187 H-------DL-------------------------------RSRLSIIPQDPTMFEG----------------------- 205 (362)
Q Consensus 187 ~-------~~-------------------------------r~~i~~v~Q~~~l~~~----------------------- 205 (362)
. .+ .+..|+++|+..+++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00 1235777777655432
Q ss_pred ----------cHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC---
Q 018040 206 ----------SVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS--- 271 (362)
Q Consensus 206 ----------tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p--- 271 (362)
|+.+++.++.... ..+..++++.+++. ...+++.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~----------~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLG----------YVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGG----------GSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCc----------hhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 3333333322211 12333445555442 12467788999999999999999999875
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCCEEEEecChhHHhhcCCc
Q 018040 272 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 272 ~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G~i~~~g~~~~l~~~~~~ 343 (362)
+||||||||+|||+.+.+.+++.|+++. +|+|||+||||++.+..||+|++| ++|+|++.|+|+++++++++
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~s 906 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHS 906 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCch
Confidence 7999999999999999999999998764 589999999999999889999999 89999999999999987643
No 61
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=3.9e-35 Score=289.79 Aligned_cols=200 Identities=19% Similarity=0.172 Sum_probs=146.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCccE
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--------------------------------------PTAGL 173 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--------------------------------------p~~G~ 173 (362)
++++++|++.+| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999977764 44789
Q ss_pred EEECCEeCCCCCHHHHhcC-cEEEcCCCCCCcccHHhhcCcCCCCCH---------------------------------
Q 018040 174 IAIDGIDISSIGLHDLRSR-LSIIPQDPTMFEGSVHNNLDPLEEYAD--------------------------------- 219 (362)
Q Consensus 174 I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~tv~enl~~~~~~~~--------------------------------- 219 (362)
+++||++++..+..++.+. +++++|+..++..+..++..+......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999875555666655 899999987765544333222111110
Q ss_pred ----------------------------------HHHHHHHHHcCCChHHH--hc-------cccch---hhhccCCCC-
Q 018040 220 ----------------------------------EEIWEALDKCQLGNEVR--KN-------EGKLE---SRVTENGEN- 252 (362)
Q Consensus 220 ----------------------------------~~~~~~l~~~~l~~~~~--~~-------~~~l~---~~~~~~g~~- 252 (362)
..+.+.++.+++..... .. ..+++ ..+..++.+
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 01111111121111000 00 00111 123333333
Q ss_pred -------CChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEE
Q 018040 253 -------WSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 253 -------LSgGqrQRv~iAral~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|++..+++|||+|||+++.+..|||+++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 7999999999999999999 9999999999999999999999999887789999999999887779999999
Q ss_pred ----eCCEEEEec
Q 018040 324 ----SYGLIEEFD 332 (362)
Q Consensus 324 ----~~G~i~~~g 332 (362)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
No 62
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=6.6e-40 Score=311.28 Aligned_cols=216 Identities=15% Similarity=0.159 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCC-cccEEEEEEEEEeCCCCCceeeeeeEEEeCC
Q 018040 65 MLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS-QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGG 143 (362)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~s~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~l~~~y~~~~~~vL~~isl~i~~G 143 (362)
.++..+...+..++.+..+.+|+.++++.+++.. . ....|+. .+.|+++||+|+|+ .++|+++||+|++|
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~-----~-~~~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~G 126 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLA-----T-GEGSWKSILTFFNYQNIELITF---INALKLWLKGIPKK 126 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHC-----C-SSCCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----C-CCCcccccCCeEEEEEEEEEcC---hhhhccceEEecCC
Confidence 4455667778888999999999999987543211 0 1111222 23589999999997 35999999999999
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh-hcCcCCCCCHHHH
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN-NLDPLEEYADEEI 222 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e-nl~~~~~~~~~~~ 222 (362)
++++|+||||||||||+++|+|++ +|+| ++|++|++.+|.+|+++ |+.+....++ .+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~-~~ 184 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH-AC 184 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH-HH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH-HH
Confidence 999999999999999999999999 7988 35689999999999997 8877543333 33
Q ss_pred HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCc
Q 018040 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC 302 (362)
Q Consensus 223 ~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~ 302 (362)
++.++.+ ++.+++ |.+|||||||| |||++++|+||| ||+||+.+++.+..
T Consensus 185 ~~~i~~~--------L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 185 WRYFDTY--------LRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp HHHHHHT--------TTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred HHHHHHH--------hHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 3333321 455665 78999999999 999999999999 99999999888752
Q ss_pred eEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhhcCCcHHHHHHH
Q 018040 303 TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 350 (362)
Q Consensus 303 tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 350 (362)
+||+++.+..||+| +|++|++++.|+++++ .+.|.+++.
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~ 273 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWG 273 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTT
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHH
Confidence 29999998889999 9999999999999998 245666654
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=3.6e-34 Score=303.23 Aligned_cols=212 Identities=25% Similarity=0.321 Sum_probs=155.6
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHH-HHcCC-------CC----------------
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQT-LFRIV-------EP---------------- 169 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~-l~gl~-------~p---------------- 169 (362)
..++++|+++ .+|+||||+|++||++||+|+||||||||++. |+|++ +|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 4599999975 16999999999999999999999999999996 66553 22
Q ss_pred --Ccc-------EEEECCEeCCCCCH----------HHHhc---------CcEEEcCCC---------------------
Q 018040 170 --TAG-------LIAIDGIDISSIGL----------HDLRS---------RLSIIPQDP--------------------- 200 (362)
Q Consensus 170 --~~G-------~I~i~g~~i~~~~~----------~~~r~---------~i~~v~Q~~--------------------- 200 (362)
.+| .|.++|.++...+. +.+|. .+||.++..
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68899988754332 12222 123322211
Q ss_pred -CCC------------------------c-ccHHhhcC--------cCCCCC-HHHHHHHHHHcCCChHHHhccccchhh
Q 018040 201 -TMF------------------------E-GSVHNNLD--------PLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESR 245 (362)
Q Consensus 201 -~l~------------------------~-~tv~enl~--------~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~ 245 (362)
.++ . .++.||+. ++.... .++..++++.+++... .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~----------~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYL----------R 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTS----------B
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcc----------c
Confidence 111 1 13444432 221111 1234455555554321 2
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEE
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKK---SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVL 321 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~---p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~ 321 (362)
+++.+.+|||||||||+|||+|+++ |++|||||||+|||+.+.+.+.+.|+++. +|.|||+|||+++.+..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 4566678999999999999999996 79999999999999999999999998764 6899999999999996699999
Q ss_pred EE------eCCEEEEecChhHHhhcCC
Q 018040 322 LL------SYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 322 vl------~~G~i~~~g~~~~l~~~~~ 342 (362)
+| ++|+|++.|+++++++.+.
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 99 7999999999999987643
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=3.8e-34 Score=303.93 Aligned_cols=212 Identities=23% Similarity=0.293 Sum_probs=155.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC-------CCCcc-------------
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-RIV-------EPTAG------------- 172 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~-------~p~~G------------- 172 (362)
..+++++++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 3588988852 2699999999999999999999999999999864 221 12233
Q ss_pred EEEECCEeCCCCC---HH-------HH---------hcCcEEEcCCCCCC------------------------------
Q 018040 173 LIAIDGIDISSIG---LH-------DL---------RSRLSIIPQDPTMF------------------------------ 203 (362)
Q Consensus 173 ~I~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~l~------------------------------ 203 (362)
.|.++|.++...+ +. .. .+.+||++|.+.+.
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4788888874321 11 11 13468888864321
Q ss_pred -------------------------cccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH
Q 018040 204 -------------------------EGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 257 (362)
Q Consensus 204 -------------------------~~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq 257 (362)
..|+.+|+.++.... ..+..++++.+++.. ..+++.+.+|||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~----------~~l~~~~~~LSGGe 850 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGE 850 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSS----------SBTTCCGGGCCHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCc----------ccccCchhhCCHHH
Confidence 013333333322211 112334455554432 13456677899999
Q ss_pred HHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCCE
Q 018040 258 RQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGL 327 (362)
Q Consensus 258 rQRv~iAral~~~p---~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G~ 327 (362)
||||+|||||+++| ++|||||||+|||+.+.+.+.+.|+++. +|.|||+|||+++.+..||||++| ++|+
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~ 930 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 930 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCE
Confidence 99999999999875 9999999999999999999999998764 589999999999998779999999 7899
Q ss_pred EEEecChhHHhhcCC
Q 018040 328 IEEFDSPTRLLENKS 342 (362)
Q Consensus 328 i~~~g~~~~l~~~~~ 342 (362)
|++.|+++++.+.+.
T Consensus 931 Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 931 IVAVGTPEEVAEVKE 945 (972)
T ss_dssp EEEEESHHHHHTCTT
T ss_pred EEEecCHHHHHhCch
Confidence 999999999987644
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-38 Score=314.44 Aligned_cols=190 Identities=11% Similarity=0.051 Sum_probs=150.1
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-E-EEECCEeCCCCCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-L-IAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~-I~i~g~~i~~~~~~~~r~~ 192 (362)
.++++|++++|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |++|| + .++.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 456666666663 68999999999999999999999999999999999999 9 99998 1 3678
Q ss_pred cEEEcCCCCCCc----ccHHhhcCcCCCC-----CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 193 LSIIPQDPTMFE----GSVHNNLDPLEEY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 193 i~~v~Q~~~l~~----~tv~enl~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
++|+||++.+|. .|+++|+ +.... ..+++.++++.+++. .... +.+|||||||||+|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~-----------~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLE-----------RINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSS-----------SGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCC-----------cccc--hhhhhHHHHHHHHH
Confidence 999999986542 4889888 43221 111222233333332 2222 55789999999999
Q ss_pred HHH--hcCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHhhcCCceEEEEecChh------hhhh-cCe-----EEEEe
Q 018040 264 ARV--LLKKSKV----LVLDE-ATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT------SVID-SDM-----VLLLS 324 (362)
Q Consensus 264 Ara--l~~~p~i----llLDE-Pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~------~~~~-~Dr-----i~vl~ 324 (362)
||| |+.+|++ ||||| ||++||+. .+.+.+.+++. +.|+|+|||+.+ .+.. ||| |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 66777777654 679999999987 6655 999 99999
Q ss_pred -CCEEEEecChhHHhh
Q 018040 325 -YGLIEEFDSPTRLLE 339 (362)
Q Consensus 325 -~G~i~~~g~~~~l~~ 339 (362)
+|+++ .|+++++.+
T Consensus 324 k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 324 KLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCTTCC-CCCHHHHHH
T ss_pred CCCcEE-ECCHHHHhh
Confidence 99999 999988743
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.7e-33 Score=299.97 Aligned_cols=211 Identities=24% Similarity=0.291 Sum_probs=151.9
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-c----CCC---CCccE------------
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-R----IVE---PTAGL------------ 173 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-g----l~~---p~~G~------------ 173 (362)
..+++++++. .+|+||||+|++||++||+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 3589999852 2699999999999999999999999999999853 2 222 23343
Q ss_pred -EEECCEeCCCCC---HH-------HH---------hcCcEEEcCCCCCC----------------------c-------
Q 018040 174 -IAIDGIDISSIG---LH-------DL---------RSRLSIIPQDPTMF----------------------E------- 204 (362)
Q Consensus 174 -I~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~l~----------------------~------- 204 (362)
|.+++.++...+ +. .+ .+.+||++|.+.+. +
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 455665553211 11 11 23468888864321 0
Q ss_pred --------------------------ccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchh-hhccCCCCCChh
Q 018040 205 --------------------------GSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLES-RVTENGENWSMG 256 (362)
Q Consensus 205 --------------------------~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~g~~LSgG 256 (362)
.|+.+++.++.... ..+..++++.++ +.. .+++.+.+||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~lg-----------L~~~~l~~~~~~LSGG 867 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVG-----------LGYVRLGQPAPTLSGG 867 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHTT-----------GGGSBTTCCGGGSCHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHHHHHHHcC-----------CCcccccCccccCCHH
Confidence 12222222221111 011223344443 333 456677889999
Q ss_pred HHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCC
Q 018040 257 QRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYG 326 (362)
Q Consensus 257 qrQRv~iAral~~~p---~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G 326 (362)
|||||+|||||+++| ++|||||||+|||+.+.+.+.+.|+++. .|.|||+|||+++.+..||||++| ++|
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G 947 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGG 947 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCC
Confidence 999999999999875 9999999999999999999999998764 589999999999998779999999 689
Q ss_pred EEEEecChhHHhhcCC
Q 018040 327 LIEEFDSPTRLLENKS 342 (362)
Q Consensus 327 ~i~~~g~~~~l~~~~~ 342 (362)
+|++.|+++++.+.+.
T Consensus 948 ~Iv~~G~~~el~~~~~ 963 (993)
T 2ygr_A 948 TVVAQGTPEDVAAVPA 963 (993)
T ss_dssp EEEEEECHHHHHHCTT
T ss_pred EEEEecCHHHHHhCCH
Confidence 9999999999987644
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=2.7e-30 Score=247.71 Aligned_cols=201 Identities=18% Similarity=0.217 Sum_probs=136.8
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----------------------------------------------
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV----------------------------------------------- 167 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~----------------------------------------------- 167 (362)
++++++.+| +++|+||||||||||+.+|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578889999 99999999999999999999554
Q ss_pred ---CCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC-cccHHhhcCcCCC--------C--------CHHHHHHHHH
Q 018040 168 ---EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-EGSVHNNLDPLEE--------Y--------ADEEIWEALD 227 (362)
Q Consensus 168 ---~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~--------~--------~~~~~~~~l~ 227 (362)
.+.+|.+++||.++...+...+...+++.||+..++ .+++.+++..... . ..+++.+.+.
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 234578899998874334445566788888887665 5677776643111 0 0011111111
Q ss_pred Hc------------CCChH-HHhccccchhh------hccCCCCCChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCC
Q 018040 228 KC------------QLGNE-VRKNEGKLESR------VTENGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVD 284 (362)
Q Consensus 228 ~~------------~l~~~-~~~~~~~l~~~------~~~~g~~LSgGqrQRv~iAral~----~~p~illLDEPts~LD 284 (362)
.+ .+... ...++.+++.. ....+.+||||||||++|||||+ .+|+++||||||++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 10 00000 01111223221 22345689999999999999996 6899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeE--EEEeCCEE-EEecChhH
Q 018040 285 TATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMV--LLLSYGLI-EEFDSPTR 336 (362)
Q Consensus 285 ~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri--~vl~~G~i-~~~g~~~~ 336 (362)
+...+.+.+.+++..+++|+|++||+.+.+..||++ ++|.+|+. +.....++
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 999999999998876678999999998766669987 88888854 33344443
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=1.1e-32 Score=248.51 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=101.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+++++||+||++ ++|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 588886 89999999999999999999999999 99999994 333321 1223567899999987 556
Q ss_pred c-CcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q 018040 211 L-DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289 (362)
Q Consensus 211 l-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~ 289 (362)
+ .+... ....+....-. ...+..+.. .| |||||++|||||+.+|++|||||||++ ++.
T Consensus 79 l~~~~~~-----~~~~~~~~~~~-------~~~~~~l~~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRP-----LHDALRDMVEP-------EVIPKLMEA---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHH-----HHHHHTTTSCT-------THHHHHHHT---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHH-----HHHHHHHhccH-------HHHHHHHHh---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 5 22110 00001000000 011222222 12 999999999999999999999999999 888
Q ss_pred HHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 290 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 290 ~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
.+.+.|++..+++||| +||+++.+.. +...++|.
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 8999998774578999 9999987654 34456664
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=1.2e-28 Score=240.24 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=76.4
Q ss_pred ccCCCCCChhHHHHHHHHHHhc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCe
Q 018040 247 TENGENWSMGQRQLVCLARVLL------KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDM 319 (362)
Q Consensus 247 ~~~g~~LSgGqrQRv~iAral~------~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dr 319 (362)
++.+.+||||||||++|||||+ .+|++|||||||++||+.+...+.+.+++.. .++|||+|||+++.+..||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 3566789999999999999999 7999999999999999999999999998864 57999999999998766999
Q ss_pred EEEEeCCEEEE
Q 018040 320 VLLLSYGLIEE 330 (362)
Q Consensus 320 i~vl~~G~i~~ 330 (362)
|++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999975
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.95 E-value=1.7e-29 Score=222.37 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=107.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWE 224 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 224 (362)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~--~~------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFS--SK------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEE--ET-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHH--hh-------
Confidence 689999999999999999999985 556666543222113567899999986 33344310 00
Q ss_pred HHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH-----hcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHh
Q 018040 225 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV-----LLKKSKVLVLDE--ATASVDTATDNLIQHTLGQ 297 (362)
Q Consensus 225 ~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra-----l~~~p~illLDE--Pts~LD~~~~~~i~~~l~~ 297 (362)
+.. .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+.+
T Consensus 63 -----~~~---------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 63 -----FFT---------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp -----TCC---------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred -----cCC---------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 000 0123455567899999999999996 999999999999 9999999999999999876
Q ss_pred hcCCceEEEEec---Chhhhhh-cCeEEEEeCCEEEE
Q 018040 298 HFSDCTVITIAH---RITSVID-SDMVLLLSYGLIEE 330 (362)
Q Consensus 298 ~~~~~tvi~itH---~l~~~~~-~Dri~vl~~G~i~~ 330 (362)
.+.|+|+++| +.+.+.. ||| .+|++++
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4667888885 7788877 887 5677766
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.95 E-value=5.2e-29 Score=217.41 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=103.6
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC--CcccHHhhcC
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM--FEGSVHNNLD 212 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l--~~~tv~enl~ 212 (362)
|+||++++||+++|+||||||||||++++.+ |...++ .+.++ ++++|++.- +.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 222221 22233 677887631 1222222210
Q ss_pred cCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH------
Q 018040 213 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA------ 286 (362)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~------ 286 (362)
......... ++...+. .....|||||||++||||++.+|++++|||||++||+.
T Consensus 64 --------~~~~~~~~~-----------g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 64 --------YIVSKRLQL-----------GKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp --------HHHHHHHHT-----------TCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred --------HHHHHHHhC-----------CCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 001111111 2222222 23346999999999999999999999999999999999
Q ss_pred ----------HHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeE
Q 018040 287 ----------TDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMV 320 (362)
Q Consensus 287 ----------~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri 320 (362)
....+.+.+++.. +|.|+|++||+++.+..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 4477788876643 489999999999999887664
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.94 E-value=9.6e-30 Score=250.81 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=136.2
Q ss_pred ceeeeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 018040 131 LVLRGLTCTFLGGM--------------------KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 131 ~vL~~isl~i~~Ge--------------------~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 190 (362)
.+|++|||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999997652 1
Q ss_pred cCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh--HHHHHHHHHHhc
Q 018040 191 SRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG--QRQLVCLARVLL 268 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG--qrQRv~iAral~ 268 (362)
.++++|++.....|+.||+.+... ...+.+.++.+++.+. +..+ . ||+| |+||++|||||+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHHHHH
Confidence 278999975445689998865422 2346677777775432 1111 1 6999 999999999999
Q ss_pred C----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhc------C----CceEEEEecChhh--hhh-cCeEE-EEe
Q 018040 269 K----------KSKVLVLDEATASVDTATDNLIQHTLGQHF------S----DCTVITIAHRITS--VID-SDMVL-LLS 324 (362)
Q Consensus 269 ~----------~p~illLDEPts~LD~~~~~~i~~~l~~~~------~----~~tvi~itH~l~~--~~~-~Dri~-vl~ 324 (362)
+ +|++++|||||++||+.+++.+.+.+++.. . ..+++++||.++. +.. ||+|. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 999999999999999999998888887642 1 2578889999886 776 88875 455
Q ss_pred CCE
Q 018040 325 YGL 327 (362)
Q Consensus 325 ~G~ 327 (362)
.|+
T Consensus 253 eg~ 255 (413)
T 1tq4_A 253 IYK 255 (413)
T ss_dssp GGG
T ss_pred cch
Confidence 543
No 73
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=1.9e-29 Score=228.80 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=114.6
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcCcEEEcCCCCCCcc-c-H
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRLSIIPQDPTMFEG-S-V 207 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i~~v~Q~~~l~~~-t-v 207 (362)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|+||++.+|+. + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 5 99999 877644322 2345689999999877643 2 1
Q ss_pred HhhcC---cCC---CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH-----HHHhcCCCCEEEE
Q 018040 208 HNNLD---PLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL-----ARVLLKKSKVLVL 276 (362)
Q Consensus 208 ~enl~---~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i-----Aral~~~p~illL 276 (362)
.+++. +.. .....++.++++..... .+. .+|||||+||++| ||+++.+|++++|
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~------------il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNKIC------------LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEE------------EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCCcE------------EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 22221 111 12244556666543211 111 4689999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 277 DEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 277 DEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
||||+++|..++..+.+.+....++.| ++| +..||.|+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999988876554545 455 344777666543
No 74
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=1.2e-27 Score=230.19 Aligned_cols=132 Identities=18% Similarity=0.182 Sum_probs=108.2
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
+++++|+.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +.....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999999999999999998642 21111233344432
Q ss_pred CcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHH
Q 018040 212 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 291 (362)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i 291 (362)
+ |||+||++|||||.++|++++|||||+. .+
T Consensus 224 --------------------------------------g----gg~~~r~~la~aL~~~p~ilildE~~~~-------e~ 254 (330)
T 2pt7_A 224 --------------------------------------G----GNITSADCLKSCLRMRPDRIILGELRSS-------EA 254 (330)
T ss_dssp --------------------------------------B----TTBCHHHHHHHHTTSCCSEEEECCCCST-------HH
T ss_pred --------------------------------------C----CChhHHHHHHHHhhhCCCEEEEcCCChH-------HH
Confidence 0 8999999999999999999999999982 24
Q ss_pred HHHHHhhcCC-ceEEEEecChhhhhhcCeEEEEeCCEE
Q 018040 292 QHTLGQHFSD-CTVITIAHRITSVIDSDMVLLLSYGLI 328 (362)
Q Consensus 292 ~~~l~~~~~~-~tvi~itH~l~~~~~~Dri~vl~~G~i 328 (362)
.+.++....+ .|+|+++|+++....|||+++|.+|+.
T Consensus 255 ~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 255 YDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 5566655555 489999999996666999999998853
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.92 E-value=2.2e-27 Score=225.55 Aligned_cols=175 Identities=15% Similarity=0.125 Sum_probs=125.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHH--hcCcEEEcCCCC-CCcc
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDL--RSRLSIIPQDPT-MFEG 205 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-l~~~ 205 (362)
+.++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688899999999999999999999999999999999999999999876532 1233 357999999987 7654
Q ss_pred -cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCC
Q 018040 206 -SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATAS 282 (362)
Q Consensus 206 -tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~ 282 (362)
|+++|+.+....... ...++.+++.+..+ ..+ .+|| |||++||||++.+|+ +|+|| ||++
T Consensus 170 ~~v~e~l~~~~~~~~d--~~lldt~gl~~~~~-------~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD--VVLCDTSGRLHTNY-------SLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCSSCCH-------HHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcCCc--chHHhcCCCCcchh-------HHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 899988532100000 01222333322211 122 2368 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEec---------Chhhhhh-cCeEEEEeCCEE
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAH---------RITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH---------~l~~~~~-~Dri~vl~~G~i 328 (362)
+|+..+. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 233 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9997542 22221 24789999999 3334444 689999999965
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.92 E-value=2.6e-28 Score=219.13 Aligned_cols=172 Identities=13% Similarity=0.052 Sum_probs=111.1
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHH
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVH 208 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~ 208 (362)
.++++| .+|++||+++|+||||||||||+++|+|+++. |.+++......+....++.++|+||++.+|+. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 357888 79999999999999999999999999999863 44444222111112235679999999887754 677
Q ss_pred hhcCcC----C-----CCCHHHHHHHHHHcC-----CChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 209 NNLDPL----E-----EYADEEIWEALDKCQ-----LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 209 enl~~~----~-----~~~~~~~~~~l~~~~-----l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
+|+.+. . .....+..+.++... +.. .++.......+..|| ||+.+|+++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~------~gl~~~~~~~~~~lS-----------~l~~~p~~~ 145 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDL------AGARAIKKTMPEAVT-----------VFLAPPSWQ 145 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCH------HHHHHHHHHCTTSEE-----------EEEECSCHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCH------HHHHHHHHhcCCcEE-----------EEEECCCHH
Confidence 766321 1 112333333333320 110 112222233344556 899999999
Q ss_pred EEeCCCCCC----CHHHHHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEe
Q 018040 275 VLDEATASV----DTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLS 324 (362)
Q Consensus 275 lLDEPts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~ 324 (362)
+|||||+++ |+..++.+.+.+++.. .+.|+|+|||+++.+.. ||||++|.
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999998 6778889999888764 47899999999999987 99999985
No 77
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.92 E-value=3e-28 Score=242.43 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=151.3
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---eCCCC-----C
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI---DISSI-----G 185 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~---~i~~~-----~ 185 (362)
..++++++++.|+.+ ..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.++|+ ++.+. .
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468899999999633 3599999 999999999999999999999999999999999999999998 44322 1
Q ss_pred HHHHhcCcEEEcCC-CCCC-cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 186 LHDLRSRLSIIPQD-PTMF-EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 186 ~~~~r~~i~~v~Q~-~~l~-~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
...+++.++|++|+ ..++ ..++.+|+.+.. +. ....+ ..+... + +...+||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-----e~---~~~~~--~~v~~~---l-----d~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA-----ED---FRDRG--QHVLLI---M-----DSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-----HH---HHTTT--CEEEEE---E-----ECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHH-----HH---HHhCC--CCHHHH---H-----HhHHHHHHHH-HHHHH
Confidence 23467789999995 3333 347888875321 11 11101 000000 1 1234579999 99999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcC-----Cc-----eEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-----DC-----TVITIAHRITSVIDSDMVLLLSYGLIEEFDS 333 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~ 333 (362)
| +.+|++ |+|||+.+...+.+.+.+..+ |+ ||+++|||++ ...||++++|.+|+|+..++
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 889988 999999999999999987643 54 9999999999 45599999999999999999
Q ss_pred hhHHhh
Q 018040 334 PTRLLE 339 (362)
Q Consensus 334 ~~~l~~ 339 (362)
+.++..
T Consensus 339 ~~~~~~ 344 (438)
T 2dpy_A 339 LAEAGH 344 (438)
T ss_dssp HHHTTC
T ss_pred HHHccC
Confidence 888754
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.91 E-value=6.3e-27 Score=219.05 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=92.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHhhcCcCCCCC----H
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEYA----D 219 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~~~~----~ 219 (362)
.++|+||||||||||+++|+|+..|++|+|.++|.++... ..++.++|++|++.++.. |+.||+.+..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 5899999999999999999999999999999999887432 345679999999988765 9999998754322 1
Q ss_pred HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc
Q 018040 220 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299 (362)
Q Consensus 220 ~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~ 299 (362)
+.+.+.+. ..+.+.++ .+||||||||+++|||++. +++||||+++||+... .+++.+.+
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~-- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK-- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT--
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh--
Confidence 22333322 12222222 2379999999999999886 9999999999999763 33333332
Q ss_pred CCceEEEEecChhhh
Q 018040 300 SDCTVITIAHRITSV 314 (362)
Q Consensus 300 ~~~tvi~itH~l~~~ 314 (362)
..++|+|.|..+.+
T Consensus 140 -~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 -VVNIIPVIAKADTM 153 (270)
T ss_dssp -TSEEEEEETTGGGS
T ss_pred -cCcEEEEEeccccC
Confidence 37999999987755
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.91 E-value=1.9e-24 Score=209.66 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=75.3
Q ss_pred CCChhHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEE
Q 018040 252 NWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~---------~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~v 322 (362)
.||||||||++|||+|+ .+|+|||||||||+||+..+..+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998764 79999999 444 8999999
Q ss_pred EeCCEEEEecChhHH
Q 018040 323 LSYGLIEEFDSPTRL 337 (362)
Q Consensus 323 l~~G~i~~~g~~~~l 337 (362)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999886
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.90 E-value=3.4e-26 Score=221.79 Aligned_cols=173 Identities=16% Similarity=0.131 Sum_probs=126.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHH--hcCcEEEcCCCC-CCc-c
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDL--RSRLSIIPQDPT-MFE-G 205 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-l~~-~ 205 (362)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999875432 1223 457999999987 665 4
Q ss_pred cHHhhcCcCCCC-CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCC
Q 018040 206 SVHNNLDPLEEY-ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATAS 282 (362)
Q Consensus 206 tv~enl~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~ 282 (362)
|+++|+.+.... .+ ...++.+|+.+..+ ..+ .+|| |||++||||++.+|+ +|+|| ||+|
T Consensus 228 tv~e~l~~~~~~~~d---~~lldt~Gl~~~~~-------~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD---VVLCDTSGRLHTNY-------SLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS---EEEEECCCCSSCCH-------HHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH---HHHHHhcCCChhhh-------hHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 889988532100 00 01122333322211 122 2368 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHhhcCCceEEEEecC---------hhhhhh-cCeEEEEeCCEE
Q 018040 283 VDTATDNLIQHTLGQHFSDCTVITIAHR---------ITSVID-SDMVLLLSYGLI 328 (362)
Q Consensus 283 LD~~~~~~i~~~l~~~~~~~tvi~itH~---------l~~~~~-~Dri~vl~~G~i 328 (362)
+|+..+. +.+.+ ..+.|+|++||. ++.+.. .+.|.++..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998653 12221 247899999992 344444 689999999964
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=8.2e-27 Score=222.57 Aligned_cols=175 Identities=13% Similarity=0.175 Sum_probs=130.8
Q ss_pred cccEEEEEEEEEeCCCCCceeeeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLRGLTCT-----------------------FLGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~~isl~-----------------------i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.+.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34699999999994 477777765 899999999999999999999999999999
Q ss_pred CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC------CCCHHHHHHHHHHcCCChHHHhccccch
Q 018040 170 TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE------EYADEEIWEALDKCQLGNEVRKNEGKLE 243 (362)
Q Consensus 170 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~ 243 (362)
+.|. +++++|+|++.+++.|+++|+.+.. ....+.+.+.++.++ . +..
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~--------~~~ 170 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-S--------GSD 170 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-T--------TCS
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-C--------Ccc
Confidence 7663 4699999999988889999986532 122345555555543 1 111
Q ss_pred hhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhh-h-cCeEE
Q 018040 244 SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI-D-SDMVL 321 (362)
Q Consensus 244 ~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~-~Dri~ 321 (362)
......|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.. + .+|+|+|+.+... + .+|.+
T Consensus 171 ---~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~ 240 (312)
T 3aez_A 171 ---YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFL 240 (312)
T ss_dssp ---CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHH
T ss_pred ---cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHH
Confidence 11223589999999999999999999999999999998622 1122221 2 5688888887654 3 77777
Q ss_pred EEeCCE
Q 018040 322 LLSYGL 327 (362)
Q Consensus 322 vl~~G~ 327 (362)
.+.+|+
T Consensus 241 ~~rd~~ 246 (312)
T 3aez_A 241 AMRTTA 246 (312)
T ss_dssp HHTTTG
T ss_pred HHHhcc
Confidence 776654
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.89 E-value=1.5e-25 Score=216.80 Aligned_cols=195 Identities=15% Similarity=0.096 Sum_probs=140.5
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC-------CCH
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS-------IGL 186 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~-------~~~ 186 (362)
..++.+++++.|+.+ ..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ...
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 358899999999733 3599999 9999999999999999999999999999999999999998865211 111
Q ss_pred HHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchh-hhccCCCCCChhHHHHHHHHH
Q 018040 187 HDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLES-RVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 187 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~g~~LSgGqrQRv~iAr 265 (362)
..+++.+.+++|... +. .+++..++..+.+.+..... +.+. .+-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----~~-----------~~r~~~~~~~~~~ae~~~~~--~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----PA-----------LERMKAAFTATTIAEYFRDQ--GKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTTS----CH-----------HHHHHHHHHHHHHHHHHHTT--TCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCCC----CH-----------HHHHHHHHHHHHHHHHHHhc--cccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 223344666665421 11 12222222222222221110 1000 0113345689999 999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc---CCc-----eEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF---SDC-----TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l 337 (362)
+.+|++ |+|+|+.....+.+.+.+.. .|. ||+++|||++ ...||++++|.+|+|+..++++++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688887 99999999999999998764 366 8999999999 334999999999999999988776
Q ss_pred h
Q 018040 338 L 338 (362)
Q Consensus 338 ~ 338 (362)
.
T Consensus 254 ~ 254 (347)
T 2obl_A 254 N 254 (347)
T ss_dssp T
T ss_pred C
Confidence 4
No 83
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.89 E-value=9.9e-24 Score=214.44 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=71.1
Q ss_pred CCCC-ChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCC
Q 018040 250 GENW-SMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYG 326 (362)
Q Consensus 250 g~~L-SgGqrQRv~iAral~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G 326 (362)
..+| ||||||||+|||||+.+| ++|||||||+|||+.+...+.+.|+++.+++|||+|||+++.+..|||+++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4456 999999999999999999 9999999999999999999999998876689999999999988889999999654
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.89 E-value=9e-24 Score=228.77 Aligned_cols=170 Identities=11% Similarity=0.143 Sum_probs=120.8
Q ss_pred ccEEEEE-----EEEEeCCCCCceeeeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 018040 114 GEVDIHG-----LQVRYAPHLPLVLRGLTCTFLG-------GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181 (362)
Q Consensus 114 ~~i~~~~-----l~~~y~~~~~~vL~~isl~i~~-------Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 181 (362)
+.|+++| |++.|.++ ..+++|++|++++ |++++|+||||||||||+|++ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 4699999 99999433 3699999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhcCcE-EEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHH
Q 018040 182 SSIGLHDLRSRLS-IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 260 (362)
Q Consensus 182 ~~~~~~~~r~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQR 260 (362)
..++| ||||++. ..++.+++.. .+++.+.+.. + ...+|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~--------------rig~~d~~~~---~--------~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFT--------------RLGASDRIMS---G--------ESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEE--------------ECC--------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHH--------------HcCCHHHHhh---c--------hhhhHHHHHH-
Confidence 23455 9999873 4467777632 1122211111 1 1235777765
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHhhc-C-CceEEEEecChhhhhh-cCeEEEEeCCEEE--EecCh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATD-NLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIE--EFDSP 334 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~-~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~Dri~vl~~G~i~--~~g~~ 334 (362)
+++|++++.+|+++||||||+|+|+... ..+...++.+. + ++++|++||+++.+.. ||++.++ +|++. +.|++
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 9999999999999999999999999874 55677777653 3 7899999999999987 9998887 58877 44544
No 85
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.89 E-value=2.4e-22 Score=193.70 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=68.4
Q ss_pred ccCCCCCChhHHH------HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCe
Q 018040 247 TENGENWSMGQRQ------LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDM 319 (362)
Q Consensus 247 ~~~g~~LSgGqrQ------Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dr 319 (362)
......||||||| |+++|||++.+|++|||||||++||+.....+.+.|++.. .++|+|+|||+.+....||+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence 3456789999999 6788899999999999999999999999999999998754 46899999999776555999
Q ss_pred EEEEe
Q 018040 320 VLLLS 324 (362)
Q Consensus 320 i~vl~ 324 (362)
|++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.88 E-value=2.1e-25 Score=227.15 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=117.1
Q ss_pred CceeeeeeE-EEeCCcEEEEEcCCCccHHHHHHH--HHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCccc
Q 018040 130 PLVLRGLTC-TFLGGMKTGIVGRTGSGKSTLIQT--LFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGS 206 (362)
Q Consensus 130 ~~vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~--l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t 206 (362)
.++|+++|+ .|++||+++|+||||||||||+++ +.|+++|++|.|+++|.+. .......++.+||++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 358999999 999999999999999999999999 6899999999999999773 112234457799999987521
Q ss_pred HHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC----
Q 018040 207 VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS---- 282 (362)
Q Consensus 207 v~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~---- 282 (362)
+|+........++..++++.+++.+..++. ...|||| +|++++|||||+.
T Consensus 101 --~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 101 --GKLFILDASPDPEGQEVVGGFDLSALIERI-----------NYAIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp --TSEEEEECCCCSSCCSCCSSHHHHHHHHHH-----------HHHHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred --CcEEEEecCcccchhhhhcccCHHHHHHHH-----------HHHHHHc-------------CCCEEEECCHHHHHHhc
Confidence 112110000000000111111111111111 1224666 4789999999984
Q ss_pred -CCHHHHHHHHHHHHhhc-CCceEEEEecChhhh---------hh-cCeEEEEeC
Q 018040 283 -VDTATDNLIQHTLGQHF-SDCTVITIAHRITSV---------ID-SDMVLLLSY 325 (362)
Q Consensus 283 -LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~---------~~-~Dri~vl~~ 325 (362)
+|+..++.+.+.++.+. .|+|+|++||+++.+ .. ||+|++|++
T Consensus 155 ~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 68999999999998764 489999999999884 55 999999998
No 87
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=2.6e-23 Score=222.01 Aligned_cols=170 Identities=19% Similarity=0.126 Sum_probs=119.2
Q ss_pred HHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC-CCHHHHHHHHHHcCCChHHHh
Q 018040 159 LIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRK 237 (362)
Q Consensus 159 Ll~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~~~~ 237 (362)
...|..+.+.|..|+|.++|+++.++....+.+.++|+.+-. .+..++...... ....+..+.+..+++...
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l--- 456 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTEREREIVGELLKEIEKRLEFLVDVGLEYL--- 456 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTTTHHHHHHHHHHHHHHHHTTTCTTC---
T ss_pred chhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHHHHHhhHHHHHHHHHHHHHcCCccc---
Confidence 345556678899999999999885432222233333322210 011111100000 000112233444444211
Q ss_pred ccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhh
Q 018040 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSV 314 (362)
Q Consensus 238 ~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~ 314 (362)
.+++...+|||||||||+|||||+++|+ +|||||||++||+...+.+.+.|+++. .|.|||+||||++.+
T Consensus 457 -------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~ 529 (916)
T 3pih_A 457 -------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI 529 (916)
T ss_dssp -------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHH
T ss_pred -------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1345566799999999999999999887 999999999999999999999999875 479999999999998
Q ss_pred hhcCeEEEE------eCCEEEEecChhHHhhcCC
Q 018040 315 IDSDMVLLL------SYGLIEEFDSPTRLLENKS 342 (362)
Q Consensus 315 ~~~Dri~vl------~~G~i~~~g~~~~l~~~~~ 342 (362)
..||+|++| ++|++++.|+++++++.+.
T Consensus 530 ~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~ 563 (916)
T 3pih_A 530 RNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPD 563 (916)
T ss_dssp HTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred HhCCEEEEEcCCcccCCCEEEEeechhhhhcCch
Confidence 889999999 8999999999999987654
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.87 E-value=3.1e-23 Score=195.70 Aligned_cols=181 Identities=12% Similarity=0.110 Sum_probs=118.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
++|+++++.+++|++++|+||||||||||++.|+|.+.|.+| .|.+.+.+ .+..++++++..++|...+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 379999999999999999999999999999999999999878 77654433 3455565555555554322 1112
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH-HHHHHHHHHhcCCCCEEEEeCCCC---C---
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ-RQLVCLARVLLKKSKVLVLDEATA---S--- 282 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq-rQRv~iAral~~~p~illLDEPts---~--- 282 (362)
++... ....++..+..+.+ +... .+ .+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~-~~~~~~~~~~~~~~-----l~~~--~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQWFDEL-----FGND--TF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH-HHHHTHHHHHHHHH-----HSSS--CE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC-CCCHHHHHHHHHHH-----hccC--CE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 22110 01111222222111 0000 11 1223335679999 67777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHhhc--CCceEEEEecCh--h--------------------hhhh-cCeEEEEeCCEE
Q 018040 283 VDT-ATDNLIQHTLGQHF--SDCTVITIAHRI--T--------------------SVID-SDMVLLLSYGLI 328 (362)
Q Consensus 283 LD~-~~~~~i~~~l~~~~--~~~tvi~itH~l--~--------------------~~~~-~Dri~vl~~G~i 328 (362)
+|. .....+.+.|+++. .++|||++||+. + .+.. ||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 55567778887653 379999999995 4 5665 999999999875
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.87 E-value=1.1e-23 Score=195.96 Aligned_cols=130 Identities=19% Similarity=0.142 Sum_probs=97.2
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 4899999 9999999999999999999999999999998 999999987653211 1112222221
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~ 289 (362)
.++ ++. ..| |++|||||.++|+++++|||| |+++..
T Consensus 79 ------------------~~g-----------l~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 ------------------EVG-----------EDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp ------------------EBT-----------TTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred ------------------HhC-----------CCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 011 110 112 899999999999999999999 988765
Q ss_pred HHHHHHHhhcCCceEEEEecChhhhhhcCeEEEE
Q 018040 290 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 323 (362)
Q Consensus 290 ~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl 323 (362)
.+.+ ....+.+|++++|+.+....|||+++|
T Consensus 115 ~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l 145 (261)
T 2eyu_A 115 TALR---AAETGHLVFGTLHTNTAIDTIHRIVDI 145 (261)
T ss_dssp HHHH---HHHTTCEEEEEECCSSHHHHHHHHHHT
T ss_pred HHHH---HHccCCEEEEEeCcchHHHHHHHHhhh
Confidence 4443 334588999999998855557876544
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.86 E-value=3.8e-22 Score=203.13 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=113.1
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE 216 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~ 216 (362)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.|++|++. ..+..+.... .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~-g 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSW-G 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTT-S
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHc-C
Confidence 3489999999999999999999999999998874 53 01345556541 1222222111 0
Q ss_pred CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH-----HHHHH
Q 018040 217 YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA-----TDNLI 291 (362)
Q Consensus 217 ~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~-----~~~~i 291 (362)
.+.+ + +...++ .......+.+|||||+||+++||++..+|+++|+| ||++||.. .++.+
T Consensus 333 ~~~~---~-~~~~g~-----------~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i 396 (525)
T 1tf7_A 333 MDFE---E-MERQNL-----------LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV 396 (525)
T ss_dssp CCHH---H-HHHTTS-----------EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH
T ss_pred CCHH---H-HHhCCC-----------EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH
Confidence 1111 1 112222 22233445678999999999999999999999999 99999998 88888
Q ss_pred HHHHHhhc-CCceEEEEecCh----------hhhhh-cCeEEEEeCCE
Q 018040 292 QHTLGQHF-SDCTVITIAHRI----------TSVID-SDMVLLLSYGL 327 (362)
Q Consensus 292 ~~~l~~~~-~~~tvi~itH~l----------~~~~~-~Dri~vl~~G~ 327 (362)
.++++... .+.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 397 ~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 397 IGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 88887654 589999999999 67776 99999999886
No 91
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.86 E-value=1.7e-24 Score=192.21 Aligned_cols=159 Identities=17% Similarity=0.182 Sum_probs=117.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHH
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEI 222 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 222 (362)
|++++|+||||||||||+++|+|+++ ++| |.++|.++.++ ..+++++||++|+. .++ ++++.....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~------ 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGL------ 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCC------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccc------
Confidence 78999999999999999999999999 999 99999887543 34678899999986 222 233321100
Q ss_pred HHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH-HHHH---HhcCCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 018040 223 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV-CLAR---VLLKKSKVLVLDE--ATASVDTATDNLIQHTLG 296 (362)
Q Consensus 223 ~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv-~iAr---al~~~p~illLDE--Pts~LD~~~~~~i~~~l~ 296 (362)
... ....+..+++.+..+|+|||+++ ++++ |++.+|+++|||| |+..+|+...+.+.+.++
T Consensus 67 -------~~~------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 67 -------EPP------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp -------CCC------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred -------cCC------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 000 00122356777778999999998 5565 6899999999999 899999988878877776
Q ss_pred hhcCCceEE----EEecChhhhhhcCeEEEEeCCEEEEec
Q 018040 297 QHFSDCTVI----TIAHRITSVIDSDMVLLLSYGLIEEFD 332 (362)
Q Consensus 297 ~~~~~~tvi----~itH~l~~~~~~Dri~vl~~G~i~~~g 332 (362)
. ..++| .++|+.+ ...+|||..+++|+|++..
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 3 23444 3449875 3447788888899998754
No 92
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.85 E-value=1.8e-21 Score=193.36 Aligned_cols=73 Identities=26% Similarity=0.301 Sum_probs=66.9
Q ss_pred CCChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEEe
Q 018040 252 NWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLS 324 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~----~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl~ 324 (362)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.+.+.. ++.++|++||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 6899999999999999999999999998865 3689999999987777799999986
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.85 E-value=1.1e-22 Score=186.02 Aligned_cols=180 Identities=12% Similarity=0.078 Sum_probs=109.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF--RIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~--gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+++++++..++.-. .++.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+++++.+... .....++.+
T Consensus 7 ~~~~~i~tg~~~lD-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (251)
T 2ehv_A 7 QPVRRVKSGIPGFD-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASF 81 (251)
T ss_dssp -CCCEECCSCTTTG-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTT
T ss_pred cccceeecCCHhHH-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHc
Confidence 44555555553211 13322 68999999999999999999999999 7756777888887754211 112334568
Q ss_pred EEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 194 SIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 194 ~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
++.+|+...+.. ++.++..........+.... + ...+.++.+....+..-..+|+
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~--------~~~~~~~~~~~~~~~l~~~~p~ 137 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVL----------------E--------DRFNVDNFLRYIYRVVKAINAK 137 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTTCS
T ss_pred CCChHHHhhcCCEEEEEccccccccccccceec----------------c--------CcccHHHHHHHHHHHHHhhCCC
Confidence 888887543321 33333211100000000000 0 0113344444444444467999
Q ss_pred EEEEeCCCCCCC-----HHHHHHHHHHHHhhc-CCceEEEEecChhhh---------hh-c-CeEEEEe
Q 018040 273 VLVLDEATASVD-----TATDNLIQHTLGQHF-SDCTVITIAHRITSV---------ID-S-DMVLLLS 324 (362)
Q Consensus 273 illLDEPts~LD-----~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~---------~~-~-Dri~vl~ 324 (362)
++++||||+++| +..++.+.+.++... .++|||++||+++.+ .. | |+|++|+
T Consensus 138 ~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 138 RLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp EEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred EEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 999999999997 566666888887654 489999999999887 44 7 9999996
No 94
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.84 E-value=6.8e-23 Score=188.54 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=103.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+......|+.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 35899999999999999999999999999999999976 555444 3567899999996333348877
Q ss_pred hcCcCC---------CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 210 NLDPLE---------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 210 nl~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
|+.+.. ....+.+.+.++.+ .... ......||+||+||+++ ++++.+|+++|||||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l---------~~~~----~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKNI---------VEGK----TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHHH---------HTTC----CEEECCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHHH---------HCCC----CeecccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 753210 11223333443321 1111 12235689999999988 6889999999999998
Q ss_pred CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh-hh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 281 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV-ID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 281 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~-~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
...|.. +.+. .+.||+++||+...+ .. ++++ ++|+ +++++.+
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 887764 2222 378999999974444 33 4444 6674 5666654
No 95
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.83 E-value=2.1e-21 Score=208.15 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=115.4
Q ss_pred cEEEEEEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------HcCCCCCccEEEECCEeCCC
Q 018040 115 EVDIHGLQVRYAP---HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL--------FRIVEPTAGLIAIDGIDISS 183 (362)
Q Consensus 115 ~i~~~~l~~~y~~---~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l--------~gl~~p~~G~I~i~g~~i~~ 183 (362)
.+.+++...-+-. +...+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 4777765433311 124689999999999999999999999999999999 55554443221
Q ss_pred CCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 184 IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 184 ~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
++++ +.+ +..+++.+.+ ...+|+|++++..+
T Consensus 702 ---------~~~~------------d~i--------------~~~ig~~d~l--------------~~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 ---------VSIV------------DCI--------------LARVGAGDSQ--------------LKGVSTFMAEMLET 732 (934)
T ss_dssp ---------EECC------------SEE--------------EEECC-----------------------CHHHHHHHHH
T ss_pred ---------chHH------------HHH--------------HHhcCchhhH--------------HHhHhhhHHHHHHH
Confidence 0000 000 0001111110 11258888888888
Q ss_pred HHHh--cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 018040 264 ARVL--LKKSKVLVLDEATASVDTATDNLI-QHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 264 Aral--~~~p~illLDEPts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l 337 (362)
|+++ +.+|+++||||||+|+|+.....+ ...++.+. .++|+|++||+.+....||++..+++|++...++++++
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 8888 999999999999999999887776 55555543 37999999999887777999999999999877665554
No 96
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.83 E-value=1.3e-21 Score=207.45 Aligned_cols=180 Identities=18% Similarity=0.174 Sum_probs=128.4
Q ss_pred CCCccHHHHHHHHHcC---------CCCCccEEEECCEeCCC---CCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCC-
Q 018040 151 RTGSGKSTLIQTLFRI---------VEPTAGLIAIDGIDISS---IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEY- 217 (362)
Q Consensus 151 ~nGsGKSTLl~~l~gl---------~~p~~G~I~i~g~~i~~---~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~- 217 (362)
.+..||+++.+.+... +.|..|+|.++|++|.+ .+..++...+.-+||++.... + +...+....
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 346 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRPEQA 346 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCSSHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcchhhH
Confidence 3567899998887763 34567999999998876 344444444444455443221 1 111111110
Q ss_pred --C---HHHHHH---HHHHcCCChHHHhccccchhh-hccCCCCCChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHH
Q 018040 218 --A---DEEIWE---ALDKCQLGNEVRKNEGKLESR-VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTA 286 (362)
Q Consensus 218 --~---~~~~~~---~l~~~~l~~~~~~~~~~l~~~-~~~~g~~LSgGqrQRv~iAral~~~p--~illLDEPts~LD~~ 286 (362)
. .+++.+ .+..+|+ +.. +++...+|||||||||+||+||.++| .+|||||||++||+.
T Consensus 347 ~i~~~i~~ei~~rl~~L~~vGL-----------~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~ 415 (842)
T 2vf7_A 347 IALQRMAADLVKRLDVLLHLGL-----------GYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPA 415 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-----------TTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-----------CcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHH
Confidence 0 011111 2333333 322 45556779999999999999999999 599999999999999
Q ss_pred HHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEEE------eCCEEEEecChhHHhhcCCcH
Q 018040 287 TDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKSSS 344 (362)
Q Consensus 287 ~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~vl------~~G~i~~~g~~~~l~~~~~~~ 344 (362)
..+.+.+.++.+. .|.|||+|+||++.+..||+|++| ++|+++..|+++++.+.+...
T Consensus 416 ~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~~ 480 (842)
T 2vf7_A 416 DTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQ 480 (842)
T ss_dssp GHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTCH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhchHHH
Confidence 9999999998765 589999999999988779999999 799999999999998754433
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.83 E-value=1e-21 Score=177.26 Aligned_cols=147 Identities=20% Similarity=0.211 Sum_probs=99.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-------TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
-|++||+++|+||||||||||+++|+|++.| ..|.+++++.+. .. ++++++++|+..+++.++.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 5899999999999999999999999996555 445788887542 11 2346777887777766888887
Q ss_pred CcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh-------cCCCCEEEEeCCCCCCC
Q 018040 212 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL-------LKKSKVLVLDEATASVD 284 (362)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral-------~~~p~illLDEPts~LD 284 (362)
.+........ +++.+..++++ ..+|+++++||||+.+|
T Consensus 95 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 6533222111 11222222222 35899999999999999
Q ss_pred HH-------HH-----HHHHHHHHhhc--CCceEEEEecChh----hhhh-cCeEEEEeCC
Q 018040 285 TA-------TD-----NLIQHTLGQHF--SDCTVITIAHRIT----SVID-SDMVLLLSYG 326 (362)
Q Consensus 285 ~~-------~~-----~~i~~~l~~~~--~~~tvi~itH~l~----~~~~-~Dri~vl~~G 326 (362)
+. .+ ..+.+.+.+.. .++|||++||... .+.. ||++++|++|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 84 21 24555555432 3799999999554 4777 9999999976
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.83 E-value=1.3e-21 Score=206.12 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=109.9
Q ss_pred ccEEEEEEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEeCCCCCHHHH
Q 018040 114 GEVDIHGLQVRYAP---HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 114 ~~i~~~~l~~~y~~---~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~~~~ 189 (362)
+.+++++. +++- ...++++|+||+ |++++|+||||||||||+|+|+|+.. +..|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--hh
Confidence 45888877 4443 234689999999 99999999999999999999999874 6777652 1 11
Q ss_pred hcCcEEEcCCCCCCc-ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh-
Q 018040 190 RSRLSIIPQDPTMFE-GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL- 267 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral- 267 (362)
+..+++++| +|. .++.+|+.. .+|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence 345777776 343 255554321 1499999999999999
Q ss_pred -cCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHhhcCCceEEEEecChhhhhhc
Q 018040 268 -LKKSKVLVLDEA---TASVDTATD-NLIQHTLGQHFSDCTVITIAHRITSVIDS 317 (362)
Q Consensus 268 -~~~p~illLDEP---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~l~~~~~~ 317 (362)
+.+|+++||||| |++||+.+. ..+.+.+.+ .++|+|++||+.+....+
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 568888876 578999999998876544
No 99
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.82 E-value=5e-21 Score=203.66 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=87.1
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEE
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~p--~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~v 322 (362)
+++...+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|+++. .|.|||+|+||++++..||||++
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 577 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID 577 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE
Confidence 45556779999999999999999985 9999999999999999999999998865 58999999999999888999999
Q ss_pred E------eCCEEEEecChhHHhhcC
Q 018040 323 L------SYGLIEEFDSPTRLLENK 341 (362)
Q Consensus 323 l------~~G~i~~~g~~~~l~~~~ 341 (362)
| ++|++++.|+++++.+.+
T Consensus 578 LgpgaG~~gG~iv~~G~~~e~~~~~ 602 (972)
T 2r6f_A 578 IGPGAGIHGGEVVAAGTPEEVMNDP 602 (972)
T ss_dssp ECSSSGGGCCSEEEEECTTTTTTCT
T ss_pred eCCCccCCCCEEEEecCHHHHHhhh
Confidence 9 799999999999987653
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.82 E-value=2.6e-20 Score=158.74 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=71.2
Q ss_pred ccCCCCCChhHHHHHHHH------HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCe
Q 018040 247 TENGENWSMGQRQLVCLA------RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDM 319 (362)
Q Consensus 247 ~~~g~~LSgGqrQRv~iA------ral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dr 319 (362)
...+.+||||||||++|| |||+.+|+++||||||++||+.+...+.+.+.+.. +++|||++||+++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 456788999999999876 99999999999999999999999999999998864 47899999999965445999
Q ss_pred EEEE--eCCE
Q 018040 320 VLLL--SYGL 327 (362)
Q Consensus 320 i~vl--~~G~ 327 (362)
+++| ++|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 5664
No 101
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.82 E-value=3.9e-23 Score=213.74 Aligned_cols=189 Identities=11% Similarity=0.191 Sum_probs=119.3
Q ss_pred cEEEEEEEEEeCCCCCceeeee----------eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCCC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGL----------TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISS 183 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~i----------sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~ 183 (362)
.++++|+++.|+....++|+.+ +++++. ++|+||||||||||+++|+|++.| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5889999999975433344444 366664 999999999999999999999988 79999999998621
Q ss_pred --C-CHHHHhcCcEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHH
Q 018040 184 --I-GLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 259 (362)
Q Consensus 184 --~-~~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQ 259 (362)
. ....+++.++|+||++.+++. |+++|+... ....+. .+..+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~~~~~~-----------------~~~~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------QNAIAG-----------------EGMGIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------HHHHHC-----------------SSSCCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------HHHhcC-----------------Cccccc---hH
Confidence 1 123567889999999988764 898887421 111100 000112 23
Q ss_pred HHHHHHHhcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHhh-c--CCceEEEEecChhhh--------hh-----c
Q 018040 260 LVCLARVLLKKSKVLVLDEA------TASVDTATDNLIQHTLGQH-F--SDCTVITIAHRITSV--------ID-----S 317 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEP------ts~LD~~~~~~i~~~l~~~-~--~~~tvi~itH~l~~~--------~~-----~ 317 (362)
++.++.+....|+++|+||| |++||+..+..+.+++++. . .+.++++++|+++.. .. .
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 44455555678999999999 9999999999999999884 2 246889999998633 11 3
Q ss_pred CeEEEEeCCEEEEecChhHH
Q 018040 318 DMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 318 Dri~vl~~G~i~~~g~~~~l 337 (362)
..|+|+.++.+++.|+.+++
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCC
T ss_pred ceEEEecchhhcCcccHHHH
Confidence 56899999988888876543
No 102
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.81 E-value=7.5e-23 Score=178.66 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=85.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCC---HHHHh-cCcE----EEcCCCCCCcccHHhhcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIG---LHDLR-SRLS----IIPQDPTMFEGSVHNNLD 212 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~l~~~tv~enl~ 212 (362)
++++|+|+||||||||+++|+|+++|+ .|.|.+||.++.+++ .+.+| +.++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999977665 55677 4688 899998876 221
Q ss_pred cCCCCCHHHHHHHHHHcCCChHHHh-ccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEE
Q 018040 213 PLEEYADEEIWEALDKCQLGNEVRK-NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 274 (362)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~il 274 (362)
... +. .+++.+++.. ++ ++|+.++|+ ||||||||++||||++++|++.
T Consensus 77 ----~~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSE-EE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCH-HH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CCh-hh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 111 11 5677888888 78 899999995 9999999999999999999873
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.81 E-value=1.4e-21 Score=185.52 Aligned_cols=161 Identities=15% Similarity=0.095 Sum_probs=79.7
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCEeCCCCCHHHHhcCcEEEc
Q 018040 119 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI-VEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 197 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 197 (362)
+||+++|++. .++++++|+| +|+||||||||||++.|+|. ..|++| |.++|.++.. .. -++.+++++
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEEe
Confidence 4788899754 5999999998 99999999999999999998 889999 8888877643 11 135689999
Q ss_pred CCCCCC-cccHHhhcCcCCCCCH-HHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 198 QDPTMF-EGSVHNNLDPLEEYAD-EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 198 Q~~~l~-~~tv~enl~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
|+..++ ..|+.|+..+...... +......+. +.+. .+.. ..++|||||||+.+|||++ +++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~~----~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FERY----LHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp C---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHHH----HHHHTSSCCTTCCCCCCCE----EEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHHH----HHHhCHHhhhhhhhhhhhh----eee
Confidence 987665 3488888765322111 111111111 0011 1111 2236999999999999986 999
Q ss_pred EeCCCCC-CCHHHHHHHHHHHHhhc--CCceEEEEecChh
Q 018040 276 LDEATAS-VDTATDNLIQHTLGQHF--SDCTVITIAHRIT 312 (362)
Q Consensus 276 LDEPts~-LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~ 312 (362)
+||||++ ||+... +.++... .+.++|+.+||+.
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999985 999864 3333332 3578899999984
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.81 E-value=4.7e-21 Score=185.50 Aligned_cols=165 Identities=22% Similarity=0.141 Sum_probs=112.1
Q ss_pred eeeee-eEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCc----cE-EEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 132 VLRGL-TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTA----GL-IAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 132 vL~~i-sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~----G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |+ |++++.+.. .++++++++|.+.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6666 68 899987641 135688899998887
Q ss_pred cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc-------CCCCEEEE
Q 018040 204 EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL-------KKSKVLVL 276 (362)
Q Consensus 204 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~-------~~p~illL 276 (362)
..++.+|+.+..... |.+|+|++.++++++ .+|+++|+
T Consensus 193 ~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 193 PDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 778888886543222 334555555555555 78999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHhhc--CCceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 277 DEATASVDTAT------------DNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 277 DEPts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
||||+++|+.. ...+...|.... .++|||+++|....... ++...+...|++++.+....+
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 99999999862 234444444432 47899999998765543 344566667777666554443
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=5.5e-22 Score=176.61 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=100.5
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEE-------CCEeCC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV-----EPTAGLIAI-------DGIDIS 182 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-----~p~~G~I~i-------~g~~i~ 182 (362)
.++++|++|+|+. +++++ |.+++|++++|+|+||||||||++.|+|.. .|+.|.+.+ ++..+.
T Consensus 3 ~l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp --------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred chhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 3789999999962 47888 889999999999999999999999999998 788887754 222221
Q ss_pred CCC-----------HHHHhcCcEEEcCCCCCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCC
Q 018040 183 SIG-----------LHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 250 (362)
Q Consensus 183 ~~~-----------~~~~r~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g 250 (362)
+.+ .+.+++.+++++|+...++. .+..++.......+.++.+.+...++.. -.+..+.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----------~~v~nK~ 147 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV----------LVLLTKA 147 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE----------EEEEECG
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCe----------EEEEecc
Confidence 111 12233334444543322222 2222222211111223444444333221 1123344
Q ss_pred CCCChhHHHH-HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc
Q 018040 251 ENWSMGQRQL-VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 299 (362)
Q Consensus 251 ~~LSgGqrQR-v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~ 299 (362)
..+|+||+|| +..+++++.+|+++++|||||++|......+.+.+.+..
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 4589999999 899999999999999999999999999999999887653
No 106
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.80 E-value=1.8e-23 Score=204.05 Aligned_cols=175 Identities=18% Similarity=0.112 Sum_probs=136.6
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcCcEEEcC-----CCCCCc
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQ-----DPTMFE 204 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-----~~~l~~ 204 (362)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..+++++| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3566665 7899999999999999999999999999998 899987775553 2 24678999999 788888
Q ss_pred ccHHhhcCcCCCC-------CHHHHHHHHHHcCCChH-------------HH----------------hccccchhhhcc
Q 018040 205 GSVHNNLDPLEEY-------ADEEIWEALDKCQLGNE-------------VR----------------KNEGKLESRVTE 248 (362)
Q Consensus 205 ~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~-------------~~----------------~~~~~l~~~~~~ 248 (362)
.+++.|+....+. +.+.++.+++.++.... ++ .++..+++.+++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 8999999764333 56666666766543111 11 134567778888
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHhhcCCceEEEEecChhh
Q 018040 249 NGENWSMGQRQLVCLARVLLKKSKV--LVLDEATASVDTA----T-----DNLIQHTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~~~p~i--llLDEPts~LD~~----~-----~~~i~~~l~~~~~~~tvi~itH~l~~ 313 (362)
++..+|+| ||+++|++++.+|++ +|+||+|++||.. + +...++.+....+|+|.+.++|++..
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 88888999 999999999999999 9999999999965 2 23466777767789999999999863
No 107
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.80 E-value=1.4e-19 Score=193.25 Aligned_cols=98 Identities=22% Similarity=0.251 Sum_probs=88.7
Q ss_pred hccCCCCCChhHHHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEEEecChhhhhhcCeEEE
Q 018040 246 VTENGENWSMGQRQLVCLARVLLKK--SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAral~~~--p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~Dri~v 322 (362)
+++...+|||||||||+||+||..+ |++|||||||++||+...+.+.+.|+++. .|.|||+|+||++++..||||++
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 594 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVD 594 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEE
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEE
Confidence 4566778999999999999999998 59999999999999999999999998764 58999999999999888999999
Q ss_pred E------eCCEEEEecChhHHhhcCCc
Q 018040 323 L------SYGLIEEFDSPTRLLENKSS 343 (362)
Q Consensus 323 l------~~G~i~~~g~~~~l~~~~~~ 343 (362)
| ++|+++..|+++++.+.+..
T Consensus 595 Lgp~aG~~gG~iv~~G~~~e~~~~~~~ 621 (993)
T 2ygr_A 595 IGPGAGEHGGRIVHSGPYDELLRNKDS 621 (993)
T ss_dssp ECSSSGGGCCSCCEEECHHHHHHCTTC
T ss_pred ecCccccCCCEEEEeeCHHHhhhhhHH
Confidence 9 79999999999999876433
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.80 E-value=8.2e-21 Score=184.09 Aligned_cols=146 Identities=19% Similarity=0.168 Sum_probs=103.7
Q ss_pred EEEEEEeCCCCCceeeeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHh
Q 018040 119 HGLQVRYAPHLPLVLRGLTC-------TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLR 190 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl-------~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r 190 (362)
..++++|.+...+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 46777775555567777776 77899999999999999999999999999987 56665433332 221 22
Q ss_pred cCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC
Q 018040 191 SRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 270 (362)
Q Consensus 191 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~ 270 (362)
...++++|...... . ++-.+ +|||||.++
T Consensus 168 ~~~~~v~q~~~~~~-----~------------------------------------------~~~~~----~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----T------------------------------------------LGFSE----ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTT-----B------------------------------------------SCHHH----HHHHHTTSC
T ss_pred ccccceeeeeeccc-----c------------------------------------------CCHHH----HHHHHhhhC
Confidence 33455555432110 0 01111 999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
|+++++|||| |.++.+.+.+. ...|+|+++++|+.+.+..+||+++|..
T Consensus 197 PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred cCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 9999999999 77765554443 3358999999999998866899887743
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.80 E-value=9.7e-23 Score=182.52 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=107.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc---cHHhhcCcC--
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG---SVHNNLDPL-- 214 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~---tv~enl~~~-- 214 (362)
.++|++++|+||||||||||+++|+|++.| +++|++|++.+++. ++.++..+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 48999999987742 676664321
Q ss_pred --CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhH----HHHHHHHHHhcCCCCEEEEeCCCCC------
Q 018040 215 --EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ----RQLVCLARVLLKKSKVLVLDEATAS------ 282 (362)
Q Consensus 215 --~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGq----rQRv~iAral~~~p~illLDEPts~------ 282 (362)
.....+.+.+.++.+++.+.+ ...+.++|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 123456667777666543322 22345678886 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHhh--cCCceEEEEecCh
Q 018040 283 -VDTATDNLIQHTLGQH--FSDCTVITIAHRI 311 (362)
Q Consensus 283 -LD~~~~~~i~~~l~~~--~~~~tvi~itH~l 311 (362)
||+..+..+.+.+.+. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999888888888754 3588999999984
No 110
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.79 E-value=2.1e-20 Score=199.87 Aligned_cols=157 Identities=13% Similarity=0.068 Sum_probs=102.4
Q ss_pred cEEEEEEEEEe-----CCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH
Q 018040 115 EVDIHGLQVRY-----APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 189 (362)
Q Consensus 115 ~i~~~~l~~~y-----~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~ 189 (362)
.+.+++...-. +.+...+++|+||++++|++++|+||||||||||+++++++.-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 57776653221 11234689999999999999999999999999999999764211
Q ss_pred hcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 190 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 190 r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
.+.-.++|++...+ .+.+++. ..+++.+. +......+|+||+|++.|+++ +.
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i~--------------~~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGIF--------------TRMGAADN-----------IYKGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEEE--------------EEC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhhhh--hHHHHHH--------------HhCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-cc
Confidence 01112333322100 0001110 01111111 111224579999999999999 89
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHHhh-c-CCceEEEEecChhhhhhcCe
Q 018040 270 KSKVLVLDEATASVDTATDNLIQ-HTLGQH-F-SDCTVITIAHRITSVIDSDM 319 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~-~~l~~~-~-~~~tvi~itH~l~~~~~~Dr 319 (362)
+|+++||||||+|+|+.....+. ..++.+ . .++|+|++||+++.+..||+
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 99999999999999999887776 555554 2 48999999999887765543
No 111
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.79 E-value=2.9e-23 Score=202.09 Aligned_cols=175 Identities=12% Similarity=0.104 Sum_probs=125.5
Q ss_pred eeeeeeEEEeC--CcEEEEEcCCCccHHHHHHHHHcCCCCCc----cEEEEC----CEeCCCCCHHHHhcCcEEEcCCCC
Q 018040 132 VLRGLTCTFLG--GMKTGIVGRTGSGKSTLIQTLFRIVEPTA----GLIAID----GIDISSIGLHDLRSRLSIIPQDPT 201 (362)
Q Consensus 132 vL~~isl~i~~--Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~----G~I~i~----g~~i~~~~~~~~r~~i~~v~Q~~~ 201 (362)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|+++ |.++ ..+..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 998873 5554 3444445 45999999988
Q ss_pred CCcccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc-CCCCEEEEeC-
Q 018040 202 MFEGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL-KKSKVLVLDE- 278 (362)
Q Consensus 202 l~~~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~-~~p~illLDE- 278 (362)
+|..|+++|+.+..... +.... .+|+|++|+..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 88889999987643211 11000 12566678888888774 6899999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHhhcC--CceEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 279 --AT------ASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 279 --Pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
|+ +++|+..+..+.+.+.+..+ +.++++++|. +.... +|++.++++ +++.+++++|.+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 65 58899988889888876533 7899999975 33333 676666654 455666666643
No 112
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.79 E-value=2.6e-20 Score=176.91 Aligned_cols=163 Identities=15% Similarity=0.075 Sum_probs=107.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHH--hcCcEEEcCCCCCCcc-cHHhhcCcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDL--RSRLSIIPQDPTMFEG-SVHNNLDPL 214 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~l~~~-tv~enl~~~ 214 (362)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|+..... ..+ |..++|++|++.+++. ++++|+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999865431 222 4569999999987764 788887421
Q ss_pred CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHH
Q 018040 215 EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASVDTATDNLIQ 292 (362)
Q Consensus 215 ~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~LD~~~~~~i~ 292 (362)
.. .+....+-..++.++ .....++..++||++||||++.+|+ ++.|| |+++. .+.
T Consensus 181 -----------~~-~~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~ 237 (304)
T 1rj9_A 181 -----------KA-RGYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGL 237 (304)
T ss_dssp -----------HH-HTCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHH
T ss_pred -----------Hh-CCCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHH
Confidence 00 011100000011010 0001135566999999999999999 44555 44443 344
Q ss_pred HHHHhhc--CCceEEEEecChhhhhh----------cCeEEEEeCCE
Q 018040 293 HTLGQHF--SDCTVITIAHRITSVID----------SDMVLLLSYGL 327 (362)
Q Consensus 293 ~~l~~~~--~~~tvi~itH~l~~~~~----------~Dri~vl~~G~ 327 (362)
+.++... .+.|+|++||+...... --.|.++-.|+
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 4444332 27899999998554321 13567777775
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.78 E-value=2.4e-20 Score=168.03 Aligned_cols=164 Identities=12% Similarity=0.048 Sum_probs=112.7
Q ss_pred ceeeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc---CcEEEcCCCCCCccc
Q 018040 131 LVLRGLTC-TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS---RLSIIPQDPTMFEGS 206 (362)
Q Consensus 131 ~vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~---~i~~v~Q~~~l~~~t 206 (362)
+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+. +...++. .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 46888887 8999999999999999999999999998888888888765443 2333222 24444443211
Q ss_pred HHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC--EEEEeCCCCCC-
Q 018040 207 VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASV- 283 (362)
Q Consensus 207 v~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~--illLDEPts~L- 283 (362)
+++......... .+ + .... ...|.++.++...+.+...+|+ ++++||||+.+
T Consensus 83 --~~~~~~~~~~~~--------~~--------~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 83 --KKLIIIDALMKE--------KE--------D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp --TTEEEEECCC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred --CCEEEEeccccc--------cC--------c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 111111111000 00 0 0000 1238899998888888778999 99999999888
Q ss_pred -CHHHHHHHHHHHHhhc--CCceEEEEecCh--------hhhhh-cCeEEEEeCC
Q 018040 284 -DTATDNLIQHTLGQHF--SDCTVITIAHRI--------TSVID-SDMVLLLSYG 326 (362)
Q Consensus 284 -D~~~~~~i~~~l~~~~--~~~tvi~itH~l--------~~~~~-~Dri~vl~~G 326 (362)
|+.....+.+.+++.. .+.|+|+++|+. ..+.. ||+|++|+..
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9988888888887653 479999999998 45766 9999999864
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=2.4e-20 Score=184.24 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=98.1
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 193 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 193 (362)
+.|.++|++++|++. .+++++||+| +|+|+||||||||+++|+|...|..| .+|.++...+ ...+..+
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTTT--TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECCE--EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeE
Confidence 458999999999754 5999999998 99999999999999999999886655 2333221111 1123468
Q ss_pred EEEcCCCCCC-cccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCC
Q 018040 194 SIIPQDPTMF-EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 272 (362)
Q Consensus 194 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ 272 (362)
++++|++.++ ..|+.||+.+.........++.+. +.+. . .++.+++||++||||++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~-----~~i~---~-----------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI-----DYID---S-----------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHHHH-----HHHH---H-----------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHHHH-----HHHH---H-----------HHHHHHHHHHHHHHHhccCCC
Confidence 9999988776 458999987643322111111110 1111 1 135677889999999999999
Q ss_pred ---EEEEeCCC-CCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 273 ---VLVLDEAT-ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 273 ---illLDEPt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
+|++|||| .+||+... .+++ .+..+.++|+|.|..+.+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~-~~lk---~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI-EFMK---RLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH-HHHH---HHTTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHH-HHHH---HHhccCcEEEEEEcccCc
Confidence 99999999 69998763 2333 333467888888876643
No 115
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.77 E-value=2.7e-22 Score=178.88 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=114.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccH
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE-------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSV 207 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv 207 (362)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+.+++..++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999886 78887 588887777777787765 78999998899
Q ss_pred HhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH-HhcCCCCEEEEeCCCCCCCHH
Q 018040 208 HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR-VLLKKSKVLVLDEATASVDTA 286 (362)
Q Consensus 208 ~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr-al~~~p~illLDEPts~LD~~ 286 (362)
.+|+ +. .++++++++++.....- .+..+.++++.... ++ .|| +++.+|++++|||||+++|.+
T Consensus 77 ~~n~-~g--~~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNL-YG--TSKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEE-EE--EEHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCcc-CC--CCHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 9998 32 25667777776422111 01123344433211 12 567 889999999999999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeC
Q 018040 287 TDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 325 (362)
Q Consensus 287 ~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~ 325 (362)
+++.|.+.|....++ +.++| +. ..+|+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999988765433 24566 33 56999988864
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.75 E-value=1.5e-19 Score=163.94 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=102.6
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cH----Hh
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SV----HN 209 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv----~e 209 (362)
.-..++|++++|+||||||||||+++|+|+++| ..|+|.+.+.+... ..++.++|+||++..|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346889999999999999999999999999986 68999988866432 235679999999877754 44 45
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~ 289 (362)
|+.+.... .|-.+++ ++.++..++++||| ||+.+..
T Consensus 86 ~~~~~~~~------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 86 HAEVFGNY------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEEETTEE------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHHhcc------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 54332110 0000111 23344457999999 9999999
Q ss_pred HHHHHHHhhcCCceEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHhh
Q 018040 290 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 290 ~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
.+.+.+. ++.||+++||+++.+.. |+ +..| .++++++..
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9998875 57899999999998876 43 6667 577777754
No 117
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.74 E-value=4.6e-18 Score=148.50 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=69.9
Q ss_pred CCCCCChhHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEEE-
Q 018040 249 NGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL- 323 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~----~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~vl- 323 (362)
+...||||||||++|||+++ ++|+++||||||++||+.+...+.+.+++..++.++|+|||+......||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 34569999999999999996 5579999999999999999999999999887778999999999887779999855
Q ss_pred -eCCE
Q 018040 324 -SYGL 327 (362)
Q Consensus 324 -~~G~ 327 (362)
++|.
T Consensus 141 ~~~g~ 145 (173)
T 3kta_B 141 MRDGV 145 (173)
T ss_dssp EETTE
T ss_pred ecCCE
Confidence 5674
No 118
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.73 E-value=4.1e-19 Score=188.13 Aligned_cols=150 Identities=11% Similarity=0.058 Sum_probs=98.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccH
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSV 207 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv 207 (362)
..+++|++|+ ++|++++|+||||||||||+|+|+|+..+ ..|. .+ +. -+..+++++| +|. .++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~v---pa--~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YV---PA--QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CB---SS--SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------cc---ch--hcccceeHHH---HHhhCCH
Confidence 4689999999 99999999999999999999999997432 1221 11 00 0123444444 222 133
Q ss_pred HhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHH
Q 018040 208 HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 287 (362)
Q Consensus 208 ~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~ 287 (362)
.+|+.. ++ ..+|+++++ ++.+...+.+|+++|||||++|+|+..
T Consensus 660 ~d~l~~---------------------------~~--------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d 703 (800)
T 1wb9_A 660 ADDLAS---------------------------GR--------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD 703 (800)
T ss_dssp ---------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred HHHHHh---------------------------hh--------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence 333210 01 234777765 444445689999999999999999865
Q ss_pred HHHH-HHHHHhhc--CCceEEEEecChhhhhhcCeEEEEeCCEEEE
Q 018040 288 DNLI-QHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEE 330 (362)
Q Consensus 288 ~~~i-~~~l~~~~--~~~tvi~itH~l~~~~~~Dri~vl~~G~i~~ 330 (362)
...+ ...++.+. .++|+|++||+.+....||++..+++|++..
T Consensus 704 ~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 704 GLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 5544 55665543 3789999999998776688776666666543
No 119
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.73 E-value=3.5e-20 Score=180.14 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=112.8
Q ss_pred EEEEEEEE---eCCCCCcee---------eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC
Q 018040 117 DIHGLQVR---YAPHLPLVL---------RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 184 (362)
Q Consensus 117 ~~~~l~~~---y~~~~~~vL---------~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~ 184 (362)
+|++++|+ |++..+++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.. ++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 78888888 753222355 99999999999999999999999999999999999999999999852 33
Q ss_pred CHHHHhcCcEEEc-CCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHH
Q 018040 185 GLHDLRSRLSIIP-QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 263 (362)
Q Consensus 185 ~~~~~r~~i~~v~-Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~i 263 (362)
.....++.+++++ |++.+ + ++++..+|-.|
T Consensus 215 ~~~~~~~~v~~v~~q~~~~--------------------------------------~-----------~~~~~t~~~~i 245 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKE--------------------------------------E-----------ENAPVTAATLL 245 (361)
T ss_dssp CCTTCSSEEEEECC-----------------------------------------------------------CCHHHHH
T ss_pred CccccCCEEEEeecCcccc--------------------------------------c-----------cccccCHHHHH
Confidence 3334566789998 65431 0 12344578888
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCC-ceEEEEecChhhhhhcCeEEEEeCCE
Q 018040 264 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD-CTVITIAHRITSVIDSDMVLLLSYGL 327 (362)
Q Consensus 264 Aral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~l~~~~~~Dri~vl~~G~ 327 (362)
++++..+|+.+++|||.. ..+.+.+.....| .|++..+|..+....+||+..|..|.
T Consensus 246 ~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 246 RSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp HHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999999986 2334455554444 57899999977555588888887763
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=8.2e-19 Score=172.96 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=111.7
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcC
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMK--TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 192 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 192 (362)
.+++++ +++|++. + |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++........++.
T Consensus 16 ~l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 355666 7888653 4 9999999999999 9999999999999999999984 34444433322334567
Q ss_pred cEEEcCCCCCCc-ccHHhhcCcCCCCCHH------------HHHHHHHHc-CCChHHHhccccchhh-------hccCCC
Q 018040 193 LSIIPQDPTMFE-GSVHNNLDPLEEYADE------------EIWEALDKC-QLGNEVRKNEGKLESR-------VTENGE 251 (362)
Q Consensus 193 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~------------~~~~~l~~~-~l~~~~~~~~~~l~~~-------~~~~g~ 251 (362)
++|++|++.++. .|+.+|+.+....... ...+.+... ++.. .++...++. +...+.
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r---~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRR---VLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCC---CCCCSCC--CCEEEEEECCCC-
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhh---hhcccccccccEEEEEEeCCCC
Confidence 999999998874 5999999876543321 122222222 1110 000001111 122334
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-hc-CCceEEEEecC
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ-HF-SDCTVITIAHR 310 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~ 310 (362)
.|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +. .|.+|+.++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 566665 7999999999999999999999998877788888875 43 57888888864
No 121
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.69 E-value=1e-17 Score=156.63 Aligned_cols=151 Identities=13% Similarity=0.154 Sum_probs=97.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcC-cCCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD-PLEEY 217 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~-~~~~~ 217 (362)
.+++|++++|+||||||||||++.+++.+. .|.+. .|.+... ...+.|+..+... ..+..++. .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 378999999999999999999999998654 56663 3543211 2356777655422 11211111 11112
Q ss_pred CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC--CCCHHHH---HHHH
Q 018040 218 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA--SVDTATD---NLIQ 292 (362)
Q Consensus 218 ~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts--~LD~~~~---~~i~ 292 (362)
......++++.+.+. ...+.....||+||+|++ ++++.+|+++|+||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAVADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHHHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ChhhhhhccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 233333344444322 223455677999998865 68889999999999999 9997544 6677
Q ss_pred HHHHhhc--CCceEEEEecChhhh
Q 018040 293 HTLGQHF--SDCTVITIAHRITSV 314 (362)
Q Consensus 293 ~~l~~~~--~~~tvi~itH~l~~~ 314 (362)
+.|.... .++|||+++|+....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 7776653 489999999987654
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.69 E-value=2e-16 Score=141.50 Aligned_cols=148 Identities=18% Similarity=0.084 Sum_probs=93.9
Q ss_pred eeeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 132 VLRGLTC-TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 132 vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
.|+.+.. -+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+...+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~--------------------- 62 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERL--------------------- 62 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHH---------------------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHH---------------------
Confidence 4555554 588999999999999999999999999 3333444443321 0111111
Q ss_pred cCcCCCCCHHHHHHHHHHcCCCh--HHHhccccchhhhccCCCCCChh--HHHHHHHHHHhcCC-CCEEEEeCCCCCCCH
Q 018040 211 LDPLEEYADEEIWEALDKCQLGN--EVRKNEGKLESRVTENGENWSMG--QRQLVCLARVLLKK-SKVLVLDEATASVDT 285 (362)
Q Consensus 211 l~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~l~~~~~~~g~~LSgG--qrQRv~iAral~~~-p~illLDEPts~LD~ 285 (362)
.+.++..++.. ..+.. .+ ..+|++ ++|+++.+|+++.+ |+++|+||||+.+|+
T Consensus 63 ------------~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 63 ------------VQMAETRGLNPEEALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp ------------HHHHHTTTCCHHHHHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred ------------HHHHHhcCCChHHHhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 11111111110 00110 00 123455 36789999999986 999999999999997
Q ss_pred HHH--------HHHHHHHHhhc--CCceEEEEecChh-------------hhhh-cCeEEEEeCC
Q 018040 286 ATD--------NLIQHTLGQHF--SDCTVITIAHRIT-------------SVID-SDMVLLLSYG 326 (362)
Q Consensus 286 ~~~--------~~i~~~l~~~~--~~~tvi~itH~l~-------------~~~~-~Dri~vl~~G 326 (362)
... ..+.+.|++.. .++|+|+++|... .+.. ||+|++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 432 33444455543 3789999999865 3555 9999999864
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.69 E-value=7.9e-19 Score=154.23 Aligned_cols=150 Identities=14% Similarity=0.025 Sum_probs=92.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA 218 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 218 (362)
.+++|++++|+||||||||||+++|+|. |..|.|.++|.++.... ..++.++|++|++. ...++.+|+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 67899999987652211 01234677777654 2346777763210
Q ss_pred HHHHHHHHHHcCCChHHHhcc--ccchhhh--ccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 018040 219 DEEIWEALDKCQLGNEVRKNE--GKLESRV--TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT 294 (362)
Q Consensus 219 ~~~~~~~l~~~~l~~~~~~~~--~~l~~~~--~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~ 294 (362)
.... ..+....++... ..++... +..+..+|+|++||+++||++.++|+++ +|+...+.+.+.
T Consensus 77 ----~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 77 ----GRYA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp ----HHHH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred ----HHHh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 0011 111100000000 0111111 2334568999999999999999999876 588777777776
Q ss_pred HHhhcCCceEEEEec
Q 018040 295 LGQHFSDCTVITIAH 309 (362)
Q Consensus 295 l~~~~~~~tvi~itH 309 (362)
+........+++.|+
T Consensus 144 ~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 144 FADLGAFEHHVLPVS 158 (191)
T ss_dssp TTCCGGGGGGEEECT
T ss_pred HhccCcccccEEECC
Confidence 654432123344444
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.67 E-value=1.7e-18 Score=165.45 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=105.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC--------CCCccEEEECCEeCCCCC---------------HHHHhcCcEEE---c
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV--------EPTAGLIAIDGIDISSIG---------------LHDLRSRLSII---P 197 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~--------~p~~G~I~i~g~~i~~~~---------------~~~~r~~i~~v---~ 197 (362)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 789999999999987653 23566678888 6
Q ss_pred CCCCC-CcccHHhhcCcCCCCCHHHHHHHH-------HHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC
Q 018040 198 QDPTM-FEGSVHNNLDPLEEYADEEIWEAL-------DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 269 (362)
Q Consensus 198 Q~~~l-~~~tv~enl~~~~~~~~~~~~~~l-------~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~ 269 (362)
|++.+ ++.++.||..+... ..+.+.+ ....+...+.. . ++.....+ ..+||+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~~~l~~~l~~-v-d~~~~~~~-~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQRYLLDGVIAL-V-DAVHADEQ-MNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHHEEEEEEEEE-E-ETTTHHHH-HHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCeEEECCEEEE-E-EHHHHHHH-HhhchHHHHHHHhCCEEEEE
Confidence 87764 46689999865421 1111111 11111110000 0 00000000 11589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 312 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 312 (362)
+|+++ ||| +.+.+.+++..++.||+++||+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 998 667777777667899999999643
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.64 E-value=1.6e-16 Score=144.34 Aligned_cols=146 Identities=19% Similarity=0.204 Sum_probs=86.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc--CCCC-----CccEEEECCEeCCCC-CHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEP-----TAGLIAIDGIDISSI-GLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p-----~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
-+++|++++|+||||||||||++.|++ +.+| ..|.+++++.+.... ....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 488999999999999999999999999 5665 578888887652110 112233345554432 3344
Q ss_pred cCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc--CCCCEEEEeCCCCCCCHH--
Q 018040 211 LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASVDTA-- 286 (362)
Q Consensus 211 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~--~~p~illLDEPts~LD~~-- 286 (362)
+.+....+.++..+ .+.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQ-----------------------------------LLYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHH-----------------------------------HHHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 43222222111111 111122222 589999999999999975
Q ss_pred -----HH-----HHHHHHHHhhc--CCceEEEEecChhh-------------------hh-hcCeEEEEeCC
Q 018040 287 -----TD-----NLIQHTLGQHF--SDCTVITIAHRITS-------------------VI-DSDMVLLLSYG 326 (362)
Q Consensus 287 -----~~-----~~i~~~l~~~~--~~~tvi~itH~l~~-------------------~~-~~Dri~vl~~G 326 (362)
.+ ..+...+.+.. .++|||+++|.... +. .||++++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23334444332 37899999996543 23 38999999975
No 126
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.63 E-value=4.9e-20 Score=162.17 Aligned_cols=169 Identities=15% Similarity=-0.007 Sum_probs=105.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC-cccHHhhcCcCCCCCHHH
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-EGSVHNNLDPLEEYADEE 221 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~ 221 (362)
|++++|+||||||||||+++|++ |.+|++.++|.++.. ...+++++|....+ ..++++|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH------MVVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT------TCCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh------hhccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999998 678999998865422 12466777765332 23666665321
Q ss_pred HHHHHHHcCCChHHHhccccchhhhccCCCCC--ChhHHHHHHHHH------HhcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 018040 222 IWEALDKCQLGNEVRKNEGKLESRVTENGENW--SMGQRQLVCLAR------VLLKKSKVLVLDEATASVDTATDNLIQH 293 (362)
Q Consensus 222 ~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~L--SgGqrQRv~iAr------al~~~p~illLDEPts~LD~~~~~~i~~ 293 (362)
...... .+....++.. .. .... +....+ |+||+|++.++. +++.+|+...+|+ ++|+...+. .+
T Consensus 66 ~~~~~~-~~~~~ild~~-~~-~~~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 66 TVNFLL-AQNDVVLDYI-AF-PDEA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp HHHHHH-TTCEEEEESC-CC-HHHH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred HHHHHh-cCCcEEEeec-cC-HHHH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 111111 1100000000 00 0000 000123 888888888888 8888888888884 899987777 77
Q ss_pred HHHhhc-CCceEEEEecC-hhhhhh-cCeEEEEeCCEEEEecChhHH
Q 018040 294 TLGQHF-SDCTVITIAHR-ITSVID-SDMVLLLSYGLIEEFDSPTRL 337 (362)
Q Consensus 294 ~l~~~~-~~~tvi~itH~-l~~~~~-~Dri~vl~~G~i~~~g~~~~l 337 (362)
.+.... .+.++|.+||. ++.++. ||+|+ ++|+++..|+++-+
T Consensus 138 ~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 138 EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 776654 35799999999 999988 99998 99999999988765
No 127
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.61 E-value=3.6e-19 Score=171.51 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=112.5
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHHhcC
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDLRSR 192 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~~ 192 (362)
++++++++|+.. .+|+++||++++|++++|+||||||||||+++|+|++.|++|+|.+.|.++.... ....+++
T Consensus 31 e~~~~~~~~~~~--~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 31 ESRRADHRAAVR--DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp TCSSHHHHHHHH--HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred eeCCcccccChH--HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 334455566432 4899999999999999999999999999999999999999999999998875322 1234677
Q ss_pred cEEEcCCCCCCcc----------c---HHhhc--------C------cCCCCCHHHHHHHHH-------------HcCCC
Q 018040 193 LSIIPQDPTMFEG----------S---VHNNL--------D------PLEEYADEEIWEALD-------------KCQLG 232 (362)
Q Consensus 193 i~~v~Q~~~l~~~----------t---v~enl--------~------~~~~~~~~~~~~~l~-------------~~~l~ 232 (362)
+++++|++.+|.. + +++.+ . .+-...+..+.+.++ .-.+.
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 9999999987741 1 11111 0 000001111100000 00011
Q ss_pred hHHHhccccch-hhhcc-CCCCCChhHHHHHHHHHHhcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 018040 233 NEVRKNEGKLE-SRVTE-NGENWSMGQRQLVCLARVLLK------KSKVLVLDEATASVDTATDNLIQHTLGQH 298 (362)
Q Consensus 233 ~~~~~~~~~l~-~~~~~-~g~~LSgGqrQRv~iAral~~------~p~illLDEPts~LD~~~~~~i~~~l~~~ 298 (362)
..+...+.-+- +.... ....+|+|++|++..|++++. +|+++. +|++|......+.+.+.+.
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 11111111000 11110 113468999999999999998 688876 9999999999888888764
No 128
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.59 E-value=3.5e-17 Score=154.34 Aligned_cols=121 Identities=10% Similarity=0.009 Sum_probs=86.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcC-------
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL------- 214 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~------- 214 (362)
++.+++|+|++|||||||.+.|.+++.+. | . . ++.+.+|+||.++++.+.++|+.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46799999999999999999999999763 2 0 1 3445666999999998988887421
Q ss_pred ------CCCCHHHHHHHHHHcCCChHHHhccccchh------hhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 018040 215 ------EEYADEEIWEALDKCQLGNEVRKNEGKLES------RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 282 (362)
Q Consensus 215 ------~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~------~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~ 282 (362)
...+.+.+.+ ++..++.+++| .+...+.++||||+||+++|++..-+|+|+|+|||+++
T Consensus 94 ~~~g~p~a~d~~~l~~---------~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ 164 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQE---------VLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLG 164 (290)
T ss_dssp SSSCSTTSBCHHHHHH---------HHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTT
T ss_pred hhccCcchhHHHHHHH---------HHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCcccc
Confidence 1122333333 34444555443 24556788999999999998333339999999999999
Q ss_pred CCHHH
Q 018040 283 VDTAT 287 (362)
Q Consensus 283 LD~~~ 287 (362)
+|+..
T Consensus 165 ld~~~ 169 (290)
T 1odf_A 165 FNPIL 169 (290)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 99853
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.57 E-value=5.6e-17 Score=162.05 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=100.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHH--HhcCcEEEcCCCCCCc-c
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHD--LRSRLSIIPQDPTMFE-G 205 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~l~~-~ 205 (362)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ... .|++++|++|++.+++ .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36789999999999999999999999999999999999999999887764321 122 3667999999987664 4
Q ss_pred cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcC-CC-CEEEEeCCCCCC
Q 018040 206 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK-KS-KVLVLDEATASV 283 (362)
Q Consensus 206 tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~-~p-~illLDEPts~L 283 (362)
++++|+.+......+ .-.++.+|....-. +|-.-.+|++.++|++.. .| .++|..+|+++.
T Consensus 363 tV~e~l~~a~~~~~D--vVLIDTaGrl~~~~---------------~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKARNID--VLIADTAGRLQNKS---------------HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHHTTCS--EEEECCCCSCCCHH---------------HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHhcCCC--EEEEeCCCccchhh---------------hHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 888887532100000 00011112111000 011123588999998754 46 355555588886
Q ss_pred CHHHHHHHHHHHHhhcCCceEEEEec
Q 018040 284 DTATDNLIQHTLGQHFSDCTVITIAH 309 (362)
Q Consensus 284 D~~~~~~i~~~l~~~~~~~tvi~itH 309 (362)
|.... .+.+.+ .-+.|.+++||
T Consensus 426 ~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 426 NAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp HHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred HHHHH---HHHHHh-hcCCCEEEEEc
Confidence 54421 222222 23679999999
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=4.4e-15 Score=142.59 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=79.7
Q ss_pred EEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC-cccHHhhcCcCCCCCHHHHH
Q 018040 146 TGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-EGSVHNNLDPLEEYADEEIW 223 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~ 223 (362)
+.|+||+|+||||+++++++ ++.|+.|++.++|.+..... ..+..+++++|.+.+. ..+- ........+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 110 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD------MGNNDRIVIQ 110 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh------cCCcchHHHH
Confidence 89999999999999999999 89999999999998764322 2256789999987542 1110 0011111233
Q ss_pred HHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCce
Q 018040 224 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCT 303 (362)
Q Consensus 224 ~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~t 303 (362)
+.++.+.... .++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+.+..++++
T Consensus 111 ~~i~~~~~~~-------~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 111 ELLKEVAQME-------QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp HHHHHHTTTT-------C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred HHHHHHHHhc-------cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 3333321110 111111 3566 778999999999999 999999999999988767889
Q ss_pred EEEEecChhhh
Q 018040 304 VITIAHRITSV 314 (362)
Q Consensus 304 vi~itH~l~~~ 314 (362)
+|++||+++.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 99999998654
No 131
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.56 E-value=2.9e-17 Score=146.99 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=98.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcC-----
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL----- 214 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~----- 214 (362)
.++|++++|+||||||||||+++|+|+++|. | ..+++|+++...+..+..+|+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4689999999999999999999999999875 3 135666666655555544444211
Q ss_pred -CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH-HHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 018040 215 -EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA-RVLLKKSKVLVLDEATASVDTATDNLIQ 292 (362)
Q Consensus 215 -~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA-ral~~~p~illLDEPts~LD~~~~~~i~ 292 (362)
.......+.+.+..... ...++....+++..+|+||+||+++| ++++.++.++++|||.-
T Consensus 80 ~~~~~~~~~~~~l~~l~~-------~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~----------- 141 (208)
T 3c8u_A 80 PETFDFEGFQRLCHALKH-------QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW----------- 141 (208)
T ss_dssp GGGBCHHHHHHHHHHHHH-------CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------
T ss_pred CchhhHHHHHHHHHHHhc-------CCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------
Confidence 01222333333322110 12355566778888999999999998 88888888888888831
Q ss_pred HHHHhhcCCceEEEEecChhh-hhh-cCeEEEEeCCEEEEecChhHHhh
Q 018040 293 HTLGQHFSDCTVITIAHRITS-VID-SDMVLLLSYGLIEEFDSPTRLLE 339 (362)
Q Consensus 293 ~~l~~~~~~~tvi~itH~l~~-~~~-~Dri~vl~~G~i~~~g~~~~l~~ 339 (362)
..+... -..++++.+..+. +.+ +.|. ++.|. +.+++..
T Consensus 142 ~~l~~~--~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~ 181 (208)
T 3c8u_A 142 RDLTAI--WDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVA 181 (208)
T ss_dssp GGGGGT--CSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHH
T ss_pred HHHHHh--cCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHH
Confidence 111121 1377888888776 333 5552 34454 4555543
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.56 E-value=7.4e-15 Score=143.01 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=67.0
Q ss_pred CCCCChhHHHHH------HHHHHhcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeEEE
Q 018040 250 GENWSMGQRQLV------CLARVLLKK-SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 322 (362)
Q Consensus 250 g~~LSgGqrQRv------~iAral~~~-p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri~v 322 (362)
...|||||+||+ ++|||++.+ |+++||||||++||+.+...+.+.+.+...+.+||++||+++....||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 358999999988 667999999 9999999999999999999999999886556799999999875445999999
Q ss_pred Ee
Q 018040 323 LS 324 (362)
Q Consensus 323 l~ 324 (362)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.55 E-value=4.7e-17 Score=149.31 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=95.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHhhcCc----
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDP---- 213 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~enl~~---- 213 (362)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.+++. ++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988775431 1233446667777766654 77776632
Q ss_pred -------CCC--CCHHHHHHHHHHcCCC--hHHHhcccc-chhhhccCCCCCChhHHHHHHHHHHh-cCCCCEEEEe---
Q 018040 214 -------LEE--YADEEIWEALDKCQLG--NEVRKNEGK-LESRVTENGENWSMGQRQLVCLARVL-LKKSKVLVLD--- 277 (362)
Q Consensus 214 -------~~~--~~~~~~~~~l~~~~l~--~~~~~~~~~-l~~~~~~~g~~LSgGqrQRv~iAral-~~~p~illLD--- 277 (362)
... ....+........... -+++..+.. ++....++...||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 001 1122221111101110 000000000 12223445567898 66 788 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHhhc
Q 018040 278 -EATASVDTATDNLIQHTLGQHF 299 (362)
Q Consensus 278 -EPts~LD~~~~~~i~~~l~~~~ 299 (362)
|||+++|+.+++.+.+.+....
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999988887653
No 134
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.55 E-value=8.5e-17 Score=138.42 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=70.2
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcC
Q 018040 119 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQ 198 (362)
Q Consensus 119 ~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 198 (362)
++++++|++. .+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++... ...+ .+++|
T Consensus 11 ~~~~~~~g~~--~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGKK--FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHHH--HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHHHH--HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 3456677542 5899999999999999999999999999999999999 9999999999876421 1111 28999
Q ss_pred CCCCCcccHHhhcC
Q 018040 199 DPTMFEGSVHNNLD 212 (362)
Q Consensus 199 ~~~l~~~tv~enl~ 212 (362)
++.+|..|+.+|+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99888668888874
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.55 E-value=1.2e-16 Score=153.20 Aligned_cols=163 Identities=15% Similarity=0.067 Sum_probs=106.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH----HHhc--CcEEEcCCCCCCcc-cHHhhcC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH----DLRS--RLSIIPQDPTMFEG-SVHNNLD 212 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~----~~r~--~i~~v~Q~~~l~~~-tv~enl~ 212 (362)
.++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .+++ .+.+++|+..+++. ++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 368999999999999999999999999999999999999998765532 2333 35699999888764 8888874
Q ss_pred cCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 018040 213 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292 (362)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~ 292 (362)
.. ... +.+.. -+|+. +.. ..-..=..+.-.++|++..++++++||.++. .| +.
T Consensus 206 ~~-----------~~~-~~d~v------liDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~------~~ 258 (328)
T 3e70_C 206 HA-----------KAR-GIDVV------LIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA------IV 258 (328)
T ss_dssp HH-----------HHH-TCSEE------EEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH------HH
T ss_pred HH-----------Hhc-cchhh------HHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH------HH
Confidence 21 000 00000 01110 000 0001123455569999999999999996665 32 22
Q ss_pred HHHHhh--cCCceEEEEecChhh---------hhh-cCeEEEEeCCEEE
Q 018040 293 HTLGQH--FSDCTVITIAHRITS---------VID-SDMVLLLSYGLIE 329 (362)
Q Consensus 293 ~~l~~~--~~~~tvi~itH~l~~---------~~~-~Dri~vl~~G~i~ 329 (362)
+.++.. ..+.|+|++||--.. +.. .-.|.++..|+-+
T Consensus 259 ~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 259 EQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 333322 237899999994332 122 4578888888754
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.54 E-value=6.2e-15 Score=144.81 Aligned_cols=147 Identities=19% Similarity=0.196 Sum_probs=91.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHH--HHHcCCCCCcc-----EEEECCEeCCC-CCHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQ--TLFRIVEPTAG-----LIAIDGIDISS-IGLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~--~l~gl~~p~~G-----~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
-|++|++++|+||||||||||++ ++.++.+++.| .+++++.+... .....+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 48899999999999999999999 44677776544 78888865311 111223344555443 45555
Q ss_pred cCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHH
Q 018040 211 LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL--LKKSKVLVLDEATASVDTATD 288 (362)
Q Consensus 211 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral--~~~p~illLDEPts~LD~~~~ 288 (362)
+.+......+. +.+.+.-++.+ -.+|+++++|||++.+|+...
T Consensus 247 i~~~~~~~~~~-----------------------------------~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADH-----------------------------------QLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHH-----------------------------------HHHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHH-----------------------------------HHHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 54332222111 11222222222 247999999999999997432
Q ss_pred ------------HHHHHHHHhhc--CCceEEEEecCh-------------------hhhhh-cCeEEEEeCCE
Q 018040 289 ------------NLIQHTLGQHF--SDCTVITIAHRI-------------------TSVID-SDMVLLLSYGL 327 (362)
Q Consensus 289 ------------~~i~~~l~~~~--~~~tvi~itH~l-------------------~~~~~-~Dri~vl~~G~ 327 (362)
..+.+.|+++. .+.|||+++|.. ..+.+ +|.+++|+.++
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 44556665543 379999999982 22355 89999999763
No 137
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.52 E-value=2e-15 Score=145.95 Aligned_cols=121 Identities=16% Similarity=0.088 Sum_probs=77.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEEC-CEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHH
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAID-GIDISSIGLHDLRSRLSIIPQDPTMFEG-SVH 208 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~ 208 (362)
-++++++. .+|++++|+||||||||||+++|+|+.+ |..|+|.++ |.+.. ...++.++++||++.+++. +++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46666664 4799999999999999999999999999 999999987 75542 1234579999999988765 888
Q ss_pred hhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 209 enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
++... ....+++.+. ..+.+.. .++....+....+|| ||+||++||+++
T Consensus 280 e~~l~--~l~~~e~~~~-----~~e~l~~--~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGLW--HLEPEQITQG-----FVEFHDY--LGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCCC--CCCHHHHHHT-----SGGGGGG--TTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhhc--CCCHHHHHHH-----HHHHHHH--cCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 86322 2333333221 1111111 123344455667789 999999999986
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.51 E-value=1.3e-17 Score=164.78 Aligned_cols=127 Identities=18% Similarity=0.081 Sum_probs=89.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHHHhcCcEEEc---------C
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHDLRSRLSIIP---------Q 198 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~v~---------Q 198 (362)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 378999999999999999999999999999999999988776321 1112344566655 8
Q ss_pred CCCCC--c-----ccHHhhcCcC----------CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH
Q 018040 199 DPTMF--E-----GSVHNNLDPL----------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 261 (362)
Q Consensus 199 ~~~l~--~-----~tv~enl~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv 261 (362)
+|.++ . .|+.+++... ...+.....+.+..+++.... . ..+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~-----------~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--I-----------SSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--H-----------HHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--H-----------HHHHHHHHHHH-
Confidence 88753 2 3777776431 011122334456667765432 1 23479999999
Q ss_pred HHHHHhcCCCCEEE
Q 018040 262 CLARVLLKKSKVLV 275 (362)
Q Consensus 262 ~iAral~~~p~ill 275 (362)
|||+|+.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999976
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.51 E-value=1.9e-17 Score=167.51 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=109.6
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHN 209 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~e 209 (362)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+. ...++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46789999999999999999999999999999999999999999998865222211 234667776544111 14444
Q ss_pred hcCc----------CCCCCHHHHHHHHHHcCCC-------------hHHHhcc---ccchhhh----c---cCCCCCChh
Q 018040 210 NLDP----------LEEYADEEIWEALDKCQLG-------------NEVRKNE---GKLESRV----T---ENGENWSMG 256 (362)
Q Consensus 210 nl~~----------~~~~~~~~~~~~l~~~~l~-------------~~~~~~~---~~l~~~~----~---~~g~~LSgG 256 (362)
++.. ..+....+...+++.+.-. +.+.++. .++...+ . .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 3311 1122233344444433110 1111111 1111111 1 123357999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-CCceEEE--EecChhhhhh-cC
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVIT--IAHRITSVID-SD 318 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~--itH~l~~~~~-~D 318 (362)
|+||.++|. + | |+|||+...+.+.+.+.++. .++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 99999988776666666554 4688875 8999998876 64
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.48 E-value=3.4e-15 Score=130.08 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=74.2
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE 216 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~ 216 (362)
+|.+++|+.++|+||||+|||||++++++.+.|.+|.. +.|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHHH-----
Confidence 45667899999999999999999999999987666521 0110 111110
Q ss_pred CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 018040 217 YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA-SVDTATDNLIQHTL 295 (362)
Q Consensus 217 ~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts-~LD~~~~~~i~~~l 295 (362)
+.+......... . -....+.+|++|+||||++ ++|+.....+.+.+
T Consensus 80 ---~~~~~~~~~~~~----------------------~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 80 ---FRLKHLMDEGKD----------------------T--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ---HHHHHHHHHTCC----------------------S--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ---HHHHHHhcCchH----------------------H--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 011111110000 0 0112234899999999995 89999999999998
Q ss_pred Hhhc-CCceEEEEecChh
Q 018040 296 GQHF-SDCTVITIAHRIT 312 (362)
Q Consensus 296 ~~~~-~~~tvi~itH~l~ 312 (362)
.... +++++|++||...
T Consensus 127 ~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTTCEEEEECCCCS
T ss_pred HHHHHcCCCEEEEcCCCh
Confidence 7654 6899999999764
No 141
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.48 E-value=1.1e-14 Score=137.97 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=78.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHh-cCcEEEcCCCCCC------cccHH
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI---DGIDISSIGLHDLR-SRLSIIPQDPTMF------EGSVH 208 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~l~------~~tv~ 208 (362)
++.+|++++|+||||||||||+++|+ +.+|++|+|.+ +|++++... ...+ +.+||++|+|.+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 34569999999999999999999999 99999999999 998876543 2222 3699999999653 3477
Q ss_pred hhc--CcC---------CC-----CCHHHHHHHHHHcCCCh-HHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 209 NNL--DPL---------EE-----YADEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 209 enl--~~~---------~~-----~~~~~~~~~l~~~~l~~-~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+|+ .+. .. .....+.++++.+++.+ ..+..+.. |||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~-----------ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKI-----------IKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHH-----------TTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHH-----------HHHHHHHHHHHhc
Confidence 777 221 11 12346788899998875 44444332 6998888999987
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.47 E-value=2.9e-14 Score=121.23 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=68.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHh
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 209 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 209 (362)
+|+++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999876 46 555544322100
Q ss_pred hcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q 018040 210 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 289 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~ 289 (362)
+++.+|++|++|||++ +|...++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2356799999999998 6665588
Q ss_pred HHHHHHHhhc-CCce-EEEEecC
Q 018040 290 LIQHTLGQHF-SDCT-VITIAHR 310 (362)
Q Consensus 290 ~i~~~l~~~~-~~~t-vi~itH~ 310 (362)
.+.+.+.... ++++ +|++||.
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 8888887654 4677 8888884
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.46 E-value=2e-16 Score=147.93 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=102.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCC-CCCc-ccHH
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP-TMFE-GSVH 208 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~~-~tv~ 208 (362)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++......+.++.+++++|.+ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3789999999999 999999999999999999999887 79999998886655555567789999986 3343 3677
Q ss_pred hhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCC-------
Q 018040 209 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA------- 281 (362)
Q Consensus 209 enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts------- 281 (362)
|++.......... + .. ........+. .+|||||+||+.|++|+.++|++| |||+.
T Consensus 110 Deid~~~~~r~~~--~-~~--~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDR--E-TG--ASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC--------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCC--c-ch--HHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 8886532211110 0 00 1111222222 236999999999999999999985 99974
Q ss_pred -----CCCHHHHHHHHHHHH
Q 018040 282 -----SVDTATDNLIQHTLG 296 (362)
Q Consensus 282 -----~LD~~~~~~i~~~l~ 296 (362)
--|...+..|++.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 235666677766553
No 144
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.41 E-value=5.1e-14 Score=138.87 Aligned_cols=153 Identities=14% Similarity=0.184 Sum_probs=92.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcC
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 212 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~ 212 (362)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+... +...+++++++.. ...++.++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 579999999999999999999999999999999843 344444332 2335677776541 1112222221
Q ss_pred cC------CCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Q 018040 213 PL------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 286 (362)
Q Consensus 213 ~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~ 286 (362)
+. ...... ..+.++.+. . +..-++-. .+...+||+||+||+++|++|+.+|.++++ +.+|+.
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~----lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--V----LLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--E----EEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--h----hhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 11 011111 111111111 0 01111111 222345899999999999999999999999 999987
Q ss_pred HHHHHHHHHHhhc-CCceEEEEec
Q 018040 287 TDNLIQHTLGQHF-SDCTVITIAH 309 (362)
Q Consensus 287 ~~~~i~~~l~~~~-~~~tvi~itH 309 (362)
....+.+...... .+.+++++|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 6533333333332 3567777664
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.40 E-value=1.7e-13 Score=129.65 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=69.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHhcCcEEEcCCCC--------------
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI---DGIDISSIGLHDLRSRLSIIPQDPT-------------- 201 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~-------------- 201 (362)
++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.+++........+.++||+|+|.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 45579999999999999999999999999999999999 9988865442111236999999985
Q ss_pred --CCc-ccHHhhcCcCC----CCCHHHHHHHHHHcCCC-hHHHhccccc
Q 018040 202 --MFE-GSVHNNLDPLE----EYADEEIWEALDKCQLG-NEVRKNEGKL 242 (362)
Q Consensus 202 --l~~-~tv~enl~~~~----~~~~~~~~~~l~~~~l~-~~~~~~~~~l 242 (362)
+|+ .|+ +|+.+.. .....++.++++.+++. +..++.|..|
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 292 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMF 292 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344 377 8887632 22345688999999995 5666666544
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.36 E-value=1.7e-15 Score=143.85 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=94.4
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHHcCCC--CCcc
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTF-------------------LGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTAG 172 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i-------------------~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p~~G 172 (362)
+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4588999999993 5899999988 8999999999999999999999999998 9999
Q ss_pred EEEE---CCEeCCCCCHHHHhcCcEEEcCCCCCCc-ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhcc
Q 018040 173 LIAI---DGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 248 (362)
Q Consensus 173 ~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 248 (362)
+|.+ ||... +. ..++.++++ |+..++. .++.+|+.+. .....-...+ ..| .++
T Consensus 112 ~i~vi~~d~~~~---~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~-----------~~l~~~~~~i-~~P-~~~----- 168 (308)
T 1sq5_A 112 RVELITTDGFLH---PN-QVLKERGLM-KKKGFPESYDMHRLVKFV-----------SDLKSGVPNV-TAP-VYS----- 168 (308)
T ss_dssp CEEEEEGGGGBC---CH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH-----------HHHTTTCSCE-EEC-CEE-----
T ss_pred eEEEEecCCccC---cH-HHHHhCCEe-ecCCCCCCccHHHHHHHH-----------HHHhCCCCce-ecc-ccc-----
Confidence 9999 88764 22 345568888 7665543 3666655321 0001100000 011 111
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 249 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 249 ~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
.+.+ +|+..+.+.+.+++++|+|.|....+.
T Consensus 169 ----~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 ----HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ----TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ----cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 1222 333333355678999999999988774
No 147
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.33 E-value=7.4e-16 Score=139.89 Aligned_cols=178 Identities=9% Similarity=0.064 Sum_probs=71.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEeCCCCCHH-HHhcCcEEEcCCCCCCcc-cHH
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAGLIAIDGIDISSIGLH-DLRSRLSIIPQDPTMFEG-SVH 208 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i~~v~Q~~~l~~~-tv~ 208 (362)
..+++||++++|++++|+||||||||||+++|+ |++++. .++.++...++. ..+..+.|.++++..|.. +..
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhhc
Confidence 578999999999999999999999999999999 998541 222222111110 011234566666554432 333
Q ss_pred hhcCc----CCC---CCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH-HHH-HHhcCCCCEEEEeCC
Q 018040 209 NNLDP----LEE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV-CLA-RVLLKKSKVLVLDEA 279 (362)
Q Consensus 209 enl~~----~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv-~iA-ral~~~p~illLDEP 279 (362)
+++.. ... ...+.+.+.++.... -. ++..+. -...-++++ .-+ ..++..|+..+++|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-vi-------ld~~~~-----g~~~~~~~~~~~~~~v~v~~~~~~~l~~R 157 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPRKNLEDNVDKGVS-TL-------LVIDWQ-----GAFKFMEMMREHVVSIFIMPPSMEELRRR 157 (231)
T ss_dssp TCEEEEEEETTEEEEEECTTHHHHHHHTCE-EE-------EECCHH-----HHHHHHHHSGGGEEEEEEECSCHHHHHHC
T ss_pred CceehhhhhccccCCCCHHHHHHHHHcCCe-EE-------EEcCHH-----HHHHHHHhcCCCeEEEEEECCcHHHHHHH
Confidence 33321 110 112233444433110 00 000000 011123333 222 234567788889999
Q ss_pred CCCCCHHHHHHHHHHHHhhc------CCceEEEEecChhhhhh-cCeEEEEeCCE
Q 018040 280 TASVDTATDNLIQHTLGQHF------SDCTVITIAHRITSVID-SDMVLLLSYGL 327 (362)
Q Consensus 280 ts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~l~~~~~-~Dri~vl~~G~ 327 (362)
+.+.|..+++.+.+.+.... ....++++.|+++.+.. .++++-...++
T Consensus 158 l~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 158 LCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp --------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 99999888777766654321 13466666776665544 55554333333
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.29 E-value=5.1e-13 Score=118.08 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=55.4
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc-cHHhhcC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLD 212 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-tv~enl~ 212 (362)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|+||++..|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974 588888777665544456779999999987754 6666653
No 149
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.28 E-value=3.5e-15 Score=146.03 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=110.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc------------CCCCCccEEEECCEeCCCCCHHHH---hcCc---EEEcCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFR------------IVEPTAGLIAIDGIDISSIGLHDL---RSRL---SIIPQDP 200 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g------------l~~p~~G~I~i~g~~i~~~~~~~~---r~~i---~~v~Q~~ 200 (362)
.+++|++++|+|+||||||||+++|+| ...|+.|.|.++|..+..+ .+. ++.+ .++.+.|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l--~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWL--CEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHH--HHHHCCSEEECEEEEEECTG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhh--hhhcccccccCcceEEEecc
Confidence 456899999999999999999999999 6679999999987432111 011 1122 3667777
Q ss_pred CCCcc-cHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCC--CEEEEe
Q 018040 201 TMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS--KVLVLD 277 (362)
Q Consensus 201 ~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p--~illLD 277 (362)
.+..+ +..+++. ......++.+.. +.. -++..-......+||+ .+| +++++|
T Consensus 94 Gl~~~~s~~e~L~-------~~fl~~ir~~d~---il~---Vvd~~~d~~i~~v~~~------------~dP~~di~ild 148 (392)
T 1ni3_A 94 GLTKGASTGVGLG-------NAFLSHVRAVDA---IYQ---VVRAFDDAEIIHVEGD------------VDPIRDLSIIV 148 (392)
T ss_dssp GGCCCCCSSSSSC-------HHHHHHHTTCSE---EEE---EEECCCTTCSSCCSSS------------SCHHHHHHHHH
T ss_pred ccccCCcHHHHHH-------HHHHHHHHHHHH---HHH---HHhccccceeeeeccc------------cCcchhhhhch
Confidence 76643 4444331 112222222211 000 0111111223335665 289 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhh-cC-CceEEEEecChhhhhh-cCeEE-EEeCC-EEEEecCh
Q 018040 278 EATASVDTATDNLIQHTLGQH-FS-DCTVITIAHRITSVID-SDMVL-LLSYG-LIEEFDSP 334 (362)
Q Consensus 278 EPts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~l~~~~~-~Dri~-vl~~G-~i~~~g~~ 334 (362)
||++.+|+...+...+.+... .+ +.|++ +|.+..+.. ||++. +|++| +++..|+.
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999988888888776 43 56653 999998887 99999 99999 88766654
No 150
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.27 E-value=5.2e-13 Score=126.54 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=56.5
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHhcCcEEEcCCCCCCc-----ccHHh
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI---DGIDISSIGLHDLRSRLSIIPQDPTMFE-----GSVHN 209 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-----~tv~e 209 (362)
+++.+|++++|+||||||||||+++|+|+.+|..|+|.+ +|+.++... ..++..++|++|.|.+.. .|+ +
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 345689999999999999999999999999999999999 888775432 112223899999997653 367 7
Q ss_pred hcC--cC-----------C-----CCCHHHHHHHHHHcCCChHH
Q 018040 210 NLD--PL-----------E-----EYADEEIWEALDKCQLGNEV 235 (362)
Q Consensus 210 nl~--~~-----------~-----~~~~~~~~~~l~~~~l~~~~ 235 (362)
|+. +. . ......+.++++..++.+..
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r 289 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYR 289 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHH
Confidence 772 11 0 11234578889999887643
No 151
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.25 E-value=1.4e-11 Score=116.23 Aligned_cols=143 Identities=13% Similarity=0.021 Sum_probs=99.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
+.++++++.|+.. . ++++|+ +|++++++|+||+||||++..|++++.+..|+|.+.+.|+......
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-------- 142 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------
Confidence 5566777778543 1 678888 9999999999999999999999999999899999987765321000
Q ss_pred EcCCCCCCcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 018040 196 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 275 (362)
Q Consensus 196 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~ill 275 (362)
+ .+....+..++.- .+.+ ..-+..+.+|.+|+++...+++++|
T Consensus 143 -------------~-----------ql~~~~~~~~l~~----~~~~---------~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 143 -------------E-----------QLRLLGEKVGVPV----LEVM---------DGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------H-----------HHHHHHHHHTCCE----EECC---------TTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------H-----------HHHHhcccCCeEE----EEcC---------CCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0 0001112222210 1100 0123445678999999889999999
Q ss_pred EeCC-CCCCCHHHHHHHHHHHHhhcCCceEEEEec
Q 018040 276 LDEA-TASVDTATDNLIQHTLGQHFSDCTVITIAH 309 (362)
Q Consensus 276 LDEP-ts~LD~~~~~~i~~~l~~~~~~~tvi~itH 309 (362)
+||| ++++|......+.+..+......+++++..
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~ 220 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 220 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeC
Confidence 9999 999999888888777766655666655543
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.25 E-value=5e-12 Score=119.38 Aligned_cols=139 Identities=13% Similarity=0.066 Sum_probs=89.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHH
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADE 220 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~ 220 (362)
++|++++++|+|||||||++..|++.+.+.+| +++.++.+|++ ..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence 46999999999999999999999999988778 13566666652 22222222
Q ss_pred HHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc-
Q 018040 221 EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF- 299 (362)
Q Consensus 221 ~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~- 299 (362)
....+..++. .... .+ +...+.+++++ .+|+++|+| |+|+|+.....+.++.+-..
T Consensus 154 --~~~~~~~gl~-----------~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 154 --KTYAELLQAP-----------LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp --HHHHTTTTCC-----------CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred --HHHHHhcCCC-----------eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 1111222221 0000 12 34456777764 899999999 99999876665555443322
Q ss_pred --CCceEEEE--ecChhhhhh-cCeEEEEeCCEEEEe
Q 018040 300 --SDCTVITI--AHRITSVID-SDMVLLLSYGLIEEF 331 (362)
Q Consensus 300 --~~~tvi~i--tH~l~~~~~-~Dri~vl~~G~i~~~ 331 (362)
...+++++ +|..+.+.. ++++..+..+.++..
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 22344454 899887776 787766777777653
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.24 E-value=3.1e-12 Score=127.99 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=50.1
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 185 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 185 (362)
+|+++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 79999999999 999999999999999999999999999999999999886543
No 154
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.23 E-value=3.3e-12 Score=121.12 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=72.7
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCC
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE 215 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~ 215 (362)
+++..++|++++|+|+|||||||+++.|++.+.+..|+|.+.+.|... .+ ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------~~------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------AA------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------HH------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------HH------------HH-------
Confidence 344567899999999999999999999999999988999987766421 00 01
Q ss_pred CCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH---HHHHHhcCCCCEEEEeCCCC
Q 018040 216 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV---CLARVLLKKSKVLVLDEATA 281 (362)
Q Consensus 216 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv---~iAral~~~p~illLDEPts 281 (362)
+.+...++..++. . ...+|+|+.|++ ++++|+..+|+++|+|||..
T Consensus 149 ----eqL~~~~~~~gl~-----------~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ----EQLKIWGERVGAT-----------V-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----HHHHHHHHHHTCE-----------E-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----HHHHHHHHHcCCc-----------E-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1222333333332 0 113589999999 99999999999999999975
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.19 E-value=7.8e-13 Score=116.12 Aligned_cols=139 Identities=17% Similarity=0.102 Sum_probs=75.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC-----------CccEEEECCEeCCC--CCHHHHhcCcEEEcCCCCCCc--ccHHh
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEP-----------TAGLIAIDGIDISS--IGLHDLRSRLSIIPQDPTMFE--GSVHN 209 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p-----------~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~l~~--~tv~e 209 (362)
+++|+|+||||||||++.++|...+ .+|+|.++|.++.- ++....++..++++|...-.. .++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976521 111111122233333211000 01222
Q ss_pred hcCcCCCCCHHHHHHHH---HH-cCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 018040 210 NLDPLEEYADEEIWEAL---DK-CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 285 (362)
Q Consensus 210 nl~~~~~~~~~~~~~~l---~~-~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~ 285 (362)
+... .+.+.+...+ .. ......+.......| |..-..+...+|++++.+|+++++| ||++|.
T Consensus 111 ~~~~---~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~D---------l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKH---LTYENVERWLKELRDHADSNIVIMLVGNKSD---------LRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCH---HHHHTHHHHHHHHHHHSCTTCEEEEEEECGG---------GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEECcc---------cccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 1110 0001111111 11 110000000111111 1111123467899999999999999 999999
Q ss_pred HHHHHHHHHHHh
Q 018040 286 ATDNLIQHTLGQ 297 (362)
Q Consensus 286 ~~~~~i~~~l~~ 297 (362)
.....+++.+.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999988888764
No 156
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.17 E-value=1.6e-15 Score=145.65 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=101.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCEeCCCC
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGG-------MKTGIVGRTGSGKSTLIQTLFRIV----EPTAGLIAIDGIDISSI 184 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~G-------e~~~ivG~nGsGKSTLl~~l~gl~----~p~~G~I~i~g~~i~~~ 184 (362)
++.++++..|+.. .+++++++.+++| +.++|+||||+|||||+++|+|.+ .+++|.+..++.++...
T Consensus 19 lr~~~l~~~~g~~--~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQE--NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSCH--HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCcH--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 3334455556543 4889999999877 899999999999999999999998 66777776665543211
Q ss_pred CHHHH-hcCcEEEcCCCCCCcccHHhhcCcC---CCCC----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChh
Q 018040 185 GLHDL-RSRLSIIPQDPTMFEGSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 256 (362)
Q Consensus 185 ~~~~~-r~~i~~v~Q~~~l~~~tv~enl~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgG 256 (362)
. ..+ +..|.+++|...++. ++.+++... .... .....+.++ ..+. +-++.. ...+...||+|
T Consensus 97 ~-~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~-----~~l~--~~~li~-at~~~~~Ls~~ 166 (334)
T 1in4_A 97 L-TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIR-----IDIQ--PFTLVG-ATTRSGLLSSP 166 (334)
T ss_dssp H-HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHH
T ss_pred H-HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccccccc-----ccCC--CeEEEE-ecCCcccCCHH
Confidence 0 112 356999999877665 666665311 0000 000000000 0000 011111 22334579999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhh
Q 018040 257 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID 316 (362)
Q Consensus 257 qrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~ 316 (362)
+|||++++ .+||+.+.+.+.+.+++..+.. -++|+.+.+..
T Consensus 167 l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~~~ 207 (334)
T 1in4_A 167 LRSRFGII----------------LELDFYTVKELKEIIKRAASLM---DVEIEDAAAEM 207 (334)
T ss_dssp HHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT---TCCBCHHHHHH
T ss_pred HHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHHHH
Confidence 99998655 6778877777877776543211 13566665544
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.16 E-value=2.4e-10 Score=103.43 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=87.4
Q ss_pred eeeee-eEEEeCCcEEEEEcCCCccHHHHHH-HHHcCCCCCccEEEECCEeCCCCCHHHH---hcCcEEEcCCCCCCccc
Q 018040 132 VLRGL-TCTFLGGMKTGIVGRTGSGKSTLIQ-TLFRIVEPTAGLIAIDGIDISSIGLHDL---RSRLSIIPQDPTMFEGS 206 (362)
Q Consensus 132 vL~~i-sl~i~~Ge~~~ivG~nGsGKSTLl~-~l~gl~~p~~G~I~i~g~~i~~~~~~~~---r~~i~~v~Q~~~l~~~t 206 (362)
.|+.+ .--+++|++++|+||||||||||+. ++.+..+...+.+++++.. +..++ ...+++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 45554 4568999999999999999999965 4455555444555555432 23332 2345555553210
Q ss_pred HHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc--CCCCEEEEeCCCCCC-
Q 018040 207 VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASV- 283 (362)
Q Consensus 207 v~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~--~~p~illLDEPts~L- 283 (362)
..++....... .. .+.. .. .+...... +....+....++.++ .+|+++++|+|++.+
T Consensus 83 -~~~l~~~~~~~-~~-------~~~~---~~----~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~ 142 (247)
T 2dr3_A 83 -KGMFAMVDAFT-AG-------IGKS---KE----YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI 142 (247)
T ss_dssp -HTSEEEEECST-TT-------TCC-----C----CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred -CCcEEEEecch-hh-------cccc---cc----cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence 01111100000 00 0000 00 00000000 112223333333333 479999999999988
Q ss_pred -CHHHHHHHHHHHHhh--cCCceEEEEecChhh--------hhh-cCeEEEEeC
Q 018040 284 -DTATDNLIQHTLGQH--FSDCTVITIAHRITS--------VID-SDMVLLLSY 325 (362)
Q Consensus 284 -D~~~~~~i~~~l~~~--~~~~tvi~itH~l~~--------~~~-~Dri~vl~~ 325 (362)
|+.....+...+.+. ..++|||+++|.... +.. ||.|+.|+.
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 143 NKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 553333333334332 347899999997754 344 999999974
No 158
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.12 E-value=1.3e-12 Score=118.79 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=51.6
Q ss_pred cEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH--------
Q 018040 115 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-------- 186 (362)
Q Consensus 115 ~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-------- 186 (362)
.|+++|+...|+. ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 4888888655521 566666 8999999999999999999999999999999999998743322
Q ss_pred HHHhcCcEEEcCC
Q 018040 187 HDLRSRLSIIPQD 199 (362)
Q Consensus 187 ~~~r~~i~~v~Q~ 199 (362)
...+..++|++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 1235679999985
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.12 E-value=4.6e-14 Score=131.60 Aligned_cols=137 Identities=13% Similarity=0.154 Sum_probs=92.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
-+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........++.+++
T Consensus 50 ~~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 50 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 345566666643 24899999999999 99999999999999999999886 7899999876543333334456778
Q ss_pred EcCCCC-CCc-ccHHhhcCcC-CCC-C-----HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 196 IPQDPT-MFE-GSVHNNLDPL-EEY-A-----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 196 v~Q~~~-l~~-~tv~enl~~~-~~~-~-----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
++|... .++ .++.|++... ... . .++..+.+ ..+ + ..|||||+||+.+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~---------~~l-------l----~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQL-------L----VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH---------HHH-------H----HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH---------HHH-------H----HHHhCCCCCCCEEEEE
Confidence 888753 333 2566666321 110 0 01111111 111 1 1259999999999999
Q ss_pred hcCCCCEEEEeCCC
Q 018040 267 LLKKSKVLVLDEAT 280 (362)
Q Consensus 267 l~~~p~illLDEPt 280 (362)
+..+|++ +|++.
T Consensus 184 ~t~~p~~--ld~~l 195 (278)
T 1iy2_A 184 ATNRPDI--LDPAL 195 (278)
T ss_dssp EESCTTS--SCHHH
T ss_pred ecCCchh--CCHhH
Confidence 9999987 67654
No 160
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.08 E-value=1.6e-10 Score=111.50 Aligned_cols=142 Identities=20% Similarity=0.197 Sum_probs=81.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-AIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEY 217 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~ 217 (362)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. .+.+++++-+++ +.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~----- 117 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LL----- 117 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CE-----
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eE-----
Confidence 478999999999999999999887775543333433 333321 0110 011111111111 00
Q ss_pred CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCC--CCEEEEeCCCCCC----------CH
Q 018040 218 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK--SKVLVLDEATASV----------DT 285 (362)
Q Consensus 218 ~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~--p~illLDEPts~L----------D~ 285 (362)
+.. . .+. .|-+.++++++++ |+++++||+++-+ |+
T Consensus 118 ----------------------------i~~-~--~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 118 ----------------------------VSQ-P--DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ----------------------------EEC-C--SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ----------------------------Eec-C--CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 000 0 122 2445678888765 9999999999998 32
Q ss_pred ---HHHHHHHHHHHhh-----cCCceEEEEecChh----------------hhhh-cCeEEEEeCCEEEEec
Q 018040 286 ---ATDNLIQHTLGQH-----FSDCTVITIAHRIT----------------SVID-SDMVLLLSYGLIEEFD 332 (362)
Q Consensus 286 ---~~~~~i~~~l~~~-----~~~~tvi~itH~l~----------------~~~~-~Dri~vl~~G~i~~~g 332 (362)
...+.+.+.++++ ..++|||+++|-.. .++. ||.++.++.++++..|
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 1112333333332 23789999999543 2445 9999999877655444
No 161
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.07 E-value=5.7e-12 Score=126.92 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=93.9
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc---ccH--
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE---GSV-- 207 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~---~tv-- 207 (362)
.+++++.++..+.|.|++||||||++++|.. ++.++.|++.+.+.|.+......+.. -|++.. ...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4778889999999999999999999999876 66777788888777765433222211 112211 001
Q ss_pred -HhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHH----------HHHHHhcCCCC-EEE
Q 018040 208 -HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV----------CLARVLLKKSK-VLV 275 (362)
Q Consensus 208 -~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv----------~iAral~~~p~-ill 275 (362)
.+.+.......+++ .+.+...++.+... ++... ...+|+||+|+. ++|+++...|. +++
T Consensus 232 a~~~L~~~~~EmerR-~~ll~~~Gv~~i~~-----yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 232 AANALRWCVNEMERR-YKLMSALGVRNLAG-----YNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTTCSSHHH-----HHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHH-HHHHHHcCCccHHH-----HHHHH---HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 11111000001111 23455555543211 11111 012588887752 46777888898 788
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---hhc--CCceEEEEecChh
Q 018040 276 LDEATASVDTATDNLIQHTLG---QHF--SDCTVITIAHRIT 312 (362)
Q Consensus 276 LDEPts~LD~~~~~~i~~~l~---~~~--~~~tvi~itH~l~ 312 (362)
+||+++-+|... ..+.+.+. +.. .|.++|++||+++
T Consensus 303 IDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999887432 23333333 222 3789999999987
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.06 E-value=9.5e-14 Score=127.50 Aligned_cols=138 Identities=13% Similarity=0.138 Sum_probs=92.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEE
Q 018040 116 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 195 (362)
Q Consensus 116 i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 195 (362)
.+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++........++.+++
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 445666666643 24899999999999 99999999999999999999886 7899998876543332333455777
Q ss_pred EcCCCC-CCc-ccHHhhcCcC-CCC------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHH
Q 018040 196 IPQDPT-MFE-GSVHNNLDPL-EEY------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 266 (362)
Q Consensus 196 v~Q~~~-l~~-~tv~enl~~~-~~~------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAra 266 (362)
++|... .++ .++.|++... ... ..++..+.+ ..+. ..|||||+||+.+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH---------HHHH-----------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEEE
Confidence 888753 233 2556666321 100 001111111 1111 1258999999999999
Q ss_pred hcCCCCEEEEeCCCC
Q 018040 267 LLKKSKVLVLDEATA 281 (362)
Q Consensus 267 l~~~p~illLDEPts 281 (362)
+..+|++ +|++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999987 687764
No 163
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.04 E-value=2.6e-11 Score=111.64 Aligned_cols=91 Identities=22% Similarity=0.200 Sum_probs=69.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEE--------ECCEeCC-CCCHHHHhcCcEEEcCCC------CC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIA--------IDGIDIS-SIGLHDLRSRLSIIPQDP------TM 202 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 202 (362)
++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++. ......+++.+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 689999999999999999999999 99999999999 9999884 345667889999999754 33
Q ss_pred CcccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHh
Q 018040 203 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRK 237 (362)
Q Consensus 203 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~ 237 (362)
+..++.+|+. ..++......+...+.+..
T Consensus 105 ~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~ 133 (252)
T 4e22_A 105 EGEDVSNEIR------TETVGNTASQAAAFPRVRE 133 (252)
T ss_dssp TTEECTTGGG------SHHHHHHHHHHTTSHHHHH
T ss_pred CCeehhHHHH------HHHHHHHHHHhcccHHHHH
Confidence 4446666653 2345555555555555544
No 164
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.02 E-value=1.7e-12 Score=116.62 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=89.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEE--------CCEeCCC-CCHHHHhcCcEEEcCCCC------CCc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV---EPTAGLIAI--------DGIDISS-IGLHDLRSRLSIIPQDPT------MFE 204 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~---~p~~G~I~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~~------l~~ 204 (362)
+.+++|+|++||||||+.++|++.+ .++.|.+.. +|.++.+ ....++++++++++|++. +..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999876 678899887 6776542 234467888999999762 233
Q ss_pred ccHHhhcCcCCCCCHHHHHHHHHHcCCChHHHhccccchhhh-ccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCC
Q 018040 205 GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRV-TENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 280 (362)
Q Consensus 205 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~-~~~g~~LSgGqrQRv~iAral~~~p~illLDEPt 280 (362)
.++.+++ .++++..++..+...+.+.....+..+.+ ..++.-++|+ .++++++.+++++|+.+++
T Consensus 85 ~~v~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEI------RTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHH------TSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhh------CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 3455544 24566777777888877766544443333 2345566776 4566778889999988764
No 165
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.98 E-value=5.8e-11 Score=103.95 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999998
No 166
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.97 E-value=3.8e-10 Score=117.67 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=91.7
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL 214 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~ 214 (362)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|..+.+....+.++.+++.+|...++..++..|+.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987665 67988 788888888888888889999998887766666666311
Q ss_pred CCCC--HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 018040 215 EEYA--DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQ 292 (362)
Q Consensus 215 ~~~~--~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~ 292 (362)
.... .......++ ..+.-++++| |+.++++.++..+.
T Consensus 82 pG~~~f~~~~~~~l~----------------------------------------~ad~~ilVvD-~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 82 PGYGDFVGEIRGALE----------------------------------------AADAALVAVS-AEAGVQVGTERAWT 120 (665)
T ss_dssp CCSGGGHHHHHHHHH----------------------------------------HCSEEEEEEE-TTTCSCHHHHHHHH
T ss_pred CCccchHHHHHHHHh----------------------------------------hcCcEEEEEc-CCcccchhHHHHHH
Confidence 1111 111111111 2456678888 88888887775443
Q ss_pred HHHHhhcCCceEEEEecChhh
Q 018040 293 HTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 293 ~~l~~~~~~~tvi~itH~l~~ 313 (362)
.+. . .+.++|++.|.++.
T Consensus 121 ~~~-~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 121 VAE-R--LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHH-H--TTCCEEEEEECGGG
T ss_pred HHH-H--ccCCEEEEecCCch
Confidence 332 2 35677788887764
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.95 E-value=4e-10 Score=112.36 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=104.8
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEeCCCCCHHHHhcCc-EEEcCCCCCCcccHH
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGIDISSIGLHDLRSRL-SIIPQDPTMFEGSVH 208 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~l~~~tv~ 208 (362)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+..++.+++ +....-+ ...++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~---~~~l~ 264 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN---AQNLR 264 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC---HHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC---HHHHh
Confidence 368888877999999999999999999999999987765445 56654432 3444443331 1111000 00111
Q ss_pred hhcCcCCCCCHHH---HHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhc--CCCCEEEEeCCCCCC
Q 018040 209 NNLDPLEEYADEE---IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASV 283 (362)
Q Consensus 209 enl~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~--~~p~illLDEPts~L 283 (362)
. ....+++ +.+++..++. .+ -.+. ....+|.+|.+ +.+|.+. .+|+++++|+++.-.
T Consensus 265 ~-----g~l~~~~~~~~~~a~~~l~~------~~----l~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 265 T-----GKLTPEDWGKLTMAMGSLSN------AG----IYID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp T-----SCCCHHHHHHHHHHHHHHHS------SC----EEEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred c-----CCCCHHHHHHHHHHHHHHhc------CC----EEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 1 1222332 2233332211 11 1111 23467999876 5667666 679999999999877
Q ss_pred CH--------HHHHHHHHHHHhhc--CCceEEEEec---------C--hh--------hhhh-cCeEEEEeCCEE
Q 018040 284 DT--------ATDNLIQHTLGQHF--SDCTVITIAH---------R--IT--------SVID-SDMVLLLSYGLI 328 (362)
Q Consensus 284 D~--------~~~~~i~~~l~~~~--~~~tvi~itH---------~--l~--------~~~~-~Dri~vl~~G~i 328 (362)
+. .....+...|+.+. .+++||+++| + +. .++. ||.|++|+.++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 12244555565543 3789999999 2 32 4555 999999987654
No 168
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.94 E-value=2.7e-11 Score=125.03 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=100.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEeCCCCCHHHHhcCcEEEcCCC---------
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-GLIAIDGIDISSIGLHDLRSRLSIIPQDP--------- 200 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--------- 200 (362)
.+++++++.+.+|+.++|+||||+|||||+++|++++++.. |.+.+++.+... ....++++|+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-----~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-----NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-----TSCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-----cCCcEEEEecchHHHHHHHHH
Confidence 58999999999999999999999999999999999999887 888888866543 234578887653
Q ss_pred -------------CCCc-ccHHhhcCcCCCCC-HHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHH
Q 018040 201 -------------TMFE-GSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 265 (362)
Q Consensus 201 -------------~l~~-~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAr 265 (362)
+.+. .++.+|+....... ...+ .. ........+...++... .....+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~---v~--~~~~~~~~L~G~~~~~~-~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPF---ID--ATGAHAGALLGDVRHDP-FQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCE---EE--CTTCCHHHHHCEECCCC-C----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCE---EE--cCCCCHHhcCceEEech-hhcCCccccccccccCce
Confidence 1111 13334432110000 0000 00 00000000111111111 112348999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 018040 266 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297 (362)
Q Consensus 266 al~~~p~illLDEPts~LD~~~~~~i~~~l~~ 297 (362)
....++.+|+|||... |++.....+.+.|.+
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 899999999999874
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.91 E-value=3e-10 Score=99.88 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 018040 261 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 297 (362)
Q Consensus 261 v~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~ 297 (362)
...|++++.+|++.++| ||++|......+++.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999988888777754
No 170
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.85 E-value=4.2e-12 Score=123.64 Aligned_cols=136 Identities=16% Similarity=0.101 Sum_probs=85.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhh
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 210 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 210 (362)
.+++++++.+++|++++|+||||||||||+++|+|. .+|++..-. . +...++..++++||.+.++ .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 478999999999999999999999999999999995 467776511 1 1112233477888886532 223
Q ss_pred cCcCCC-------CCH----HHHHHHHHH---cCCChHHHhccccch-----hhhccCCCCCChhHHHHHHHHHHhcCCC
Q 018040 211 LDPLEE-------YAD----EEIWEALDK---CQLGNEVRKNEGKLE-----SRVTENGENWSMGQRQLVCLARVLLKKS 271 (362)
Q Consensus 211 l~~~~~-------~~~----~~~~~~l~~---~~l~~~~~~~~~~l~-----~~~~~~g~~LSgGqrQRv~iAral~~~p 271 (362)
+..... ... ..+...+.- +.+. ...+..++ -.+..+...+++|++||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~---tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLE---KKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEEC---CSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeec---cCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 322111 011 112222210 0000 00000000 1234455678999999999998999999
Q ss_pred CEEE-EeCCCC
Q 018040 272 KVLV-LDEATA 281 (362)
Q Consensus 272 ~ill-LDEPts 281 (362)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9998 999987
No 171
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.72 E-value=1.9e-09 Score=95.60 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=62.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 204 (362)
+...+|++++|+||||||||||++.|++.++ |..|+ ++|++..-++...+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999886 67787 688887777777777655 57778888
Q ss_pred ccHHhhcCcCCCCCHHHHHHHHHH
Q 018040 205 GSVHNNLDPLEEYADEEIWEALDK 228 (362)
Q Consensus 205 ~tv~enl~~~~~~~~~~~~~~l~~ 228 (362)
+++.+|. ++ ...+.+.++++.
T Consensus 89 ~~~~~n~-YG--t~~~~v~~~l~~ 109 (197)
T 3ney_A 89 GSYQGNM-FG--TKFETVHQIHKQ 109 (197)
T ss_dssp EEETTEE-EE--EEHHHHHHHHHT
T ss_pred hhhhcee-cc--cchhhHHHHHhc
Confidence 8888885 32 234556666553
No 172
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.71 E-value=1.1e-09 Score=95.26 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEE
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAI 176 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i 176 (362)
+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6999999999999999999999999874 4565543
No 173
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.71 E-value=5.6e-09 Score=91.89 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=41.6
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCC
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 203 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 203 (362)
+++++|++++|+|||||||||++++|++++.|+.| +.+ +....... ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977655 212 22221111 11223488888876443
No 174
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.70 E-value=9.4e-10 Score=97.24 Aligned_cols=61 Identities=20% Similarity=0.086 Sum_probs=43.4
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC
Q 018040 137 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 202 (362)
Q Consensus 137 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 202 (362)
.++.++|++++|+||||||||||+++|++.+ |.+.++|.++... ....+..+++++|++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCccc
Confidence 4667889999999999999999999999987 8999998776421 11122346888887543
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.69 E-value=1.5e-08 Score=101.40 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEeCCC----------CCCCHHHHHHHHHHHHhh-----cCCceEEEEecChhhh
Q 018040 255 MGQRQLVCLARVLLKKSKVLVLDEAT----------ASVDTATDNLIQHTLGQH-----FSDCTVITIAHRITSV 314 (362)
Q Consensus 255 gGqrQRv~iAral~~~p~illLDEPt----------s~LD~~~~~~i~~~l~~~-----~~~~tvi~itH~l~~~ 314 (362)
+++++|-.+++|....|.+|++||+. ++.|....+.+.+++... ..+..||.+||+++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 67889999999999999999999993 466766666555555433 2356889999998654
No 176
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.68 E-value=7.3e-09 Score=99.96 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=43.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECCEeCCCCCHHHHhcCcEEEcCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-AIDGIDISSIGLHDLRSRLSIIPQDP 200 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~ 200 (362)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.... + ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhh
Confidence 378999999999999999999999999887777765 66664322 1 22445567666654
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.67 E-value=2.6e-10 Score=114.87 Aligned_cols=138 Identities=13% Similarity=0.159 Sum_probs=93.0
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEE
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 196 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 196 (362)
+++++...|.. +.+++++++++++| +.|+||+|+|||||+++|++... .|.+.++|.++.........+++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 34444444432 24788999999999 99999999999999999999875 68999999877554333344557778
Q ss_pred cCCCC-CCcc-cHHhhcCcCCC-C------CHHHHHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHh
Q 018040 197 PQDPT-MFEG-SVHNNLDPLEE-Y------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 267 (362)
Q Consensus 197 ~Q~~~-l~~~-tv~enl~~~~~-~------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral 267 (362)
+|... ..+. .+.|++..... . ..++..+.+.. + + ..||||++|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~---------L-------L----~~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ---------L-------L----VEMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH---------H-------H----HHGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH---------H-------H----HHhcccccCccEEEEEe
Confidence 88764 2333 45666643211 0 11222222211 1 1 12589999999999999
Q ss_pred cCCCCEEEEeCCCCC
Q 018040 268 LKKSKVLVLDEATAS 282 (362)
Q Consensus 268 ~~~p~illLDEPts~ 282 (362)
.++|++ ||||.-.
T Consensus 176 tn~p~~--LD~aLlr 188 (499)
T 2dhr_A 176 TNRPDI--LDPALLR 188 (499)
T ss_dssp CSCGGG--SCTTTSS
T ss_pred cCChhh--cCccccc
Confidence 999987 8998764
No 178
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.66 E-value=1.2e-09 Score=100.57 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=35.7
Q ss_pred cEEEEEE-EEEeCCCCCceeeeeeEEEeC---CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 115 EVDIHGL-QVRYAPHLPLVLRGLTCTFLG---GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 115 ~i~~~~l-~~~y~~~~~~vL~~isl~i~~---Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+ +|+|++. .++|+++||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5999999 9999332 4699999999999 9999999999999999999999865
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.62 E-value=7.8e-09 Score=100.20 Aligned_cols=137 Identities=20% Similarity=0.218 Sum_probs=80.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-----------CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCC----CcccHH-
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE-----------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM----FEGSVH- 208 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~-----------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----~~~tv~- 208 (362)
+++|+|++|||||||++.|+|... |..|.|.++|.++. +....|++.+.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999875 56799999987652 22345666654321 111221
Q ss_pred ----hhcCcCCCC--CH----HH---HHHHHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHH----HHh-cCC
Q 018040 209 ----NNLDPLEEY--AD----EE---IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA----RVL-LKK 270 (362)
Q Consensus 209 ----enl~~~~~~--~~----~~---~~~~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iA----ral-~~~ 270 (362)
+.+.+.-+. .. +. +.+.++..++.+ .| --.+..+...+|+|++||+.++ +++ ..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~----~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG----KP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS----CC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC----CC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 111111111 11 11 233444443321 11 0112333344688899988877 666 444
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q 018040 271 SKVLVLDEATASVDTATDNLIQHTLGQH 298 (362)
Q Consensus 271 p~illLDEPts~LD~~~~~~i~~~l~~~ 298 (362)
|++ +|+|++|......+.+.|.+.
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHH
Confidence 554 899999999888888877653
No 180
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.62 E-value=4.1e-09 Score=91.25 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=62.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE--eCCCCCH----HHHhcCcEEEcCCCCC-C--c
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI--DISSIGL----HDLRSRLSIIPQDPTM-F--E 204 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~--~i~~~~~----~~~r~~i~~v~Q~~~l-~--~ 204 (362)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-.... ...+..|.+++|++.- + .
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 99999999999999999999998887765432221 1100000 0123468999998631 1 1
Q ss_pred ---ccHHhhcCc---------CCCCCHHHHHHHHHHcCCCh
Q 018040 205 ---GSVHNNLDP---------LEEYADEEIWEALDKCQLGN 233 (362)
Q Consensus 205 ---~tv~enl~~---------~~~~~~~~~~~~l~~~~l~~ 233 (362)
.++...+.. .......++.+.++.+++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 123222210 11234667778888877753
No 181
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.59 E-value=5.9e-09 Score=99.31 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=55.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHH-----hcCcEEE-cCCCC
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDL-----RSRLSII-PQDPT 201 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~~~ 201 (362)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 467888889999999999999999999999999999999999998887754321 233 4568888 66543
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.58 E-value=1.9e-08 Score=88.91 Aligned_cols=126 Identities=12% Similarity=0.164 Sum_probs=73.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCCCCHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWE 224 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 224 (362)
+++|+|++||||||+.+.|+++ |...+|+- .+.+.+. + ++ ...+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d--------~~~~~~~---~-----~~-------------~~~~~~ 49 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD--------VVAREVV---A-----KD-------------SPLLSK 49 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH--------HHHHHTT---C-----SS-------------CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH--------HHHHHHc---c-----CC-------------hHHHHH
Confidence 6899999999999999999983 55555432 1211110 0 00 112223
Q ss_pred HHHHcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceE
Q 018040 225 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTV 304 (362)
Q Consensus 225 ~l~~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tv 304 (362)
..+..|.. .-.+.|+.+|..+++.+..+|+.+-.+ .+.++|...+.+.+.+... .+.++
T Consensus 50 i~~~~g~~------------------~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~v 108 (206)
T 1jjv_A 50 IVEHFGAQ------------------ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYT 108 (206)
T ss_dssp HHHHHCTT------------------CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEE
T ss_pred HHHHhCHH------------------HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEE
Confidence 33333321 012678999999999988887644332 3345666666666655443 35588
Q ss_pred EEEecChhhh--h-hcCeEEEEeC
Q 018040 305 ITIAHRITSV--I-DSDMVLLLSY 325 (362)
Q Consensus 305 i~itH~l~~~--~-~~Dri~vl~~ 325 (362)
|+.+|.+... . .||++++++.
T Consensus 109 v~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 109 LFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp EEECTTTTTTTCGGGCSEEEEEEC
T ss_pred EEEechhhhcCcHhhCCEEEEEEC
Confidence 8888987654 3 4999999864
No 183
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.58 E-value=1.2e-08 Score=108.00 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=52.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhcC-CceEEE-EecChhhhhh-cC
Q 018040 252 NWSMGQRQLVCLARVLLKKSKVLVLDEATA-SVDTATDNLIQHTLGQHFS-DCTVIT-IAHRITSVID-SD 318 (362)
Q Consensus 252 ~LSgGqrQRv~iAral~~~p~illLDEPts-~LD~~~~~~i~~~l~~~~~-~~tvi~-itH~l~~~~~-~D 318 (362)
-+|.|+.+|..++++++.+++++|+|||.. +||......+.+.+..... .+++++ +||+.+.+.. ++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 468999999999999999999999999997 8998766655555555443 467777 5898877665 44
No 184
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.56 E-value=1.5e-07 Score=90.78 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCCChhHHHHHHHHHHhcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHhhcCCceEEEEe--cChh
Q 018040 251 ENWSMGQRQLVCLARVLLKKSKVLVLD-EATASVDTATDNLIQHTLGQHFSDCTVITIA--HRIT 312 (362)
Q Consensus 251 ~~LSgGqrQRv~iAral~~~p~illLD-EPts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~l~ 312 (362)
..+|+|++|++. +.+...++-++++| ++++++|......+.+.+.....++.+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 346999999887 66666778889999 9999999988887777776654478888888 7774
No 185
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.55 E-value=1.8e-09 Score=95.37 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=44.9
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE--EECCEeC
Q 018040 120 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI--AIDGIDI 181 (362)
Q Consensus 120 ~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I--~i~g~~i 181 (362)
|++..++.- .+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 4 NIKWHECSV--EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp ------CCC--CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCccccccc--CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 445444332 36677888889999999999999999999999999987 67988 8887654
No 186
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.48 E-value=2.6e-08 Score=88.06 Aligned_cols=45 Identities=31% Similarity=0.280 Sum_probs=38.1
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcc
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG 205 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 205 (362)
-++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 3677899999999999999999999999874 36788888877654
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.42 E-value=2.8e-07 Score=88.84 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=34.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEPTAGLIAIDG 178 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g 178 (362)
.+|++++++++ .++|+|++|||||||++.|.| ++++.+|.+.-.+
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 37889999988 999999999999999999999 6777777765443
No 188
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=1.1e-07 Score=83.79 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=24.9
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 130 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 130 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999765
No 189
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.40 E-value=3.5e-09 Score=100.81 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=34.5
Q ss_pred eeeeeeEEEeCCc------EEEEEcCCCccHHHHHHHHHcCCC--CCccEEEE
Q 018040 132 VLRGLTCTFLGGM------KTGIVGRTGSGKSTLIQTLFRIVE--PTAGLIAI 176 (362)
Q Consensus 132 vL~~isl~i~~Ge------~~~ivG~nGsGKSTLl~~l~gl~~--p~~G~I~i 176 (362)
.|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+.+
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 4555555555555 899999999999999999999987 45555433
No 190
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.38 E-value=4.4e-08 Score=87.09 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=29.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEE
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLI 174 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I 174 (362)
++|++++|+||||||||||++.|++.+++ ..+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~ 40 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI 40 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEE
Confidence 57999999999999999999999999987 33333
No 191
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.35 E-value=8.9e-07 Score=84.73 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=65.3
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 211 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 211 (362)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.| .|+.=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEeC-------------
Confidence 4555554688999999999999999999988775433222222 22211
Q ss_pred CcCCCCCHHHHHH-HHH-HcCCChHHHhccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q 018040 212 DPLEEYADEEIWE-ALD-KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 284 (362)
Q Consensus 212 ~~~~~~~~~~~~~-~l~-~~~l~~~~~~~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~illLDEPts~LD 284 (362)
+.+.+++.. .+. ..++.. .+ + .. ..||.+++||++.|...+.+++++|.|+|...+|
T Consensus 83 ----Ems~~ql~~Rlls~~~~v~~--~~----l---~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ----EMSAEQLALRALSDLTSINM--HD----L---ES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ----SSCHHHHHHHHHHHHHCCCH--HH----H---HH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ----CCCHHHHHHHHHHHhhCCCH--HH----H---hc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 112222221 111 112211 00 1 00 1589999999999999999999999999876544
No 192
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.30 E-value=1.2e-07 Score=83.63 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=39.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 185 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 185 (362)
.++|++++|+|+|||||||+++.|.+++++..|.|.+.+.+....+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 4678999999999999999999999999888899988766654333
No 193
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.30 E-value=1.8e-07 Score=84.46 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=46.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC------CHHH----HhcCcEEEcCCCCCCc
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI------GLHD----LRSRLSIIPQDPTMFE 204 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~l~~ 204 (362)
+.++|++++|.|+|||||||++++|+|+ .|+|.+.+.+.... .... .++.+++++|.+.++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 4478999999999999999999999998 78999988765321 1111 1345788888765543
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.28 E-value=4.7e-07 Score=86.05 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=25.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999888764
No 195
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.26 E-value=2.5e-06 Score=84.23 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 181 (362)
++.+++++|++||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999988888888766654
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.16 E-value=4.7e-07 Score=77.60 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=33.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 182 (362)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88899886654
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.14 E-value=1.5e-06 Score=85.69 Aligned_cols=61 Identities=18% Similarity=0.039 Sum_probs=49.7
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC
Q 018040 117 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 183 (362)
Q Consensus 117 ~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 183 (362)
..+++++.|++.. ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+..
T Consensus 78 v~~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 78 VYEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 3445666675431 567777 899999999999999999999999999999999998777643
No 198
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.13 E-value=4.6e-07 Score=92.28 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=47.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEE-ECCEeCCC-------CCHH---HHhcCcEEEcCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIA-IDGIDISS-------IGLH---DLRSRLSIIPQD 199 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~-i~g~~i~~-------~~~~---~~r~~i~~v~Q~ 199 (362)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. +||.++.. .+.. ..++++++++|+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~ 437 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE 437 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999887 784 89876521 1211 234557888776
No 199
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.13 E-value=6.3e-07 Score=84.36 Aligned_cols=147 Identities=20% Similarity=0.139 Sum_probs=74.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC-CEeCCCCCHHHHhcCcEEEcCCCCCCcccHHhhcCcCCC-CCH
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID-GIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YAD 219 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~ 219 (362)
++.+++|+|++|+|||||++.|+|.- +.+. +.+- . ...+..++++++..-+. +.|. ++.. ...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~--t---Tr~~~~gi~~~~~~~i~--~iDT--pG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQ--T---TRHRIVGIHTEGAYQAI--YVDT--PGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSS--C---CSSCEEEEEEETTEEEE--EESS--SSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCC--c---ceeeEEEEEEECCeeEE--EEEC--cCCCccch
Confidence 34589999999999999999999863 2221 1110 0 11234677776542111 1110 1110 001
Q ss_pred HHHHHHHHHcCCChHHHhccccchh--hhccCCCCCChhHHHHHHHHHHhc--CCCCEEEEeCCCCCCCHHH-HHHHHHH
Q 018040 220 EEIWEALDKCQLGNEVRKNEGKLES--RVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASVDTAT-DNLIQHT 294 (362)
Q Consensus 220 ~~~~~~l~~~~l~~~~~~~~~~l~~--~~~~~g~~LSgGqrQRv~iAral~--~~p~illLDEPts~LD~~~-~~~i~~~ 294 (362)
..+.+.+ .... .......|. .+-+... +|+|++ .+++++. ..|.++++ +.+|... +..+.+.
T Consensus 72 ~~l~~~~--~~~~---~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~ 138 (301)
T 1ega_A 72 RAINRLM--NKAA---SSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPH 138 (301)
T ss_dssp HHHHHHH--TCCT---TSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHH
T ss_pred hhHHHHH--HHHH---HHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHH
Confidence 1111111 0100 000111111 1112222 898886 4566665 67889988 7888765 5556666
Q ss_pred HHhhcC--C--ceEEEEecChhhhhh
Q 018040 295 LGQHFS--D--CTVITIAHRITSVID 316 (362)
Q Consensus 295 l~~~~~--~--~tvi~itH~l~~~~~ 316 (362)
+.+..+ + ..+.+++|+-..+..
T Consensus 139 l~~l~~~~~~~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 139 LQFLASQMNFLDIVPISAETGLNVDT 164 (301)
T ss_dssp HHHHHTTSCCSEEEECCTTTTTTHHH
T ss_pred HHHHHHhcCcCceEEEECCCCCCHHH
Confidence 654432 3 356667776655543
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.13 E-value=9.2e-06 Score=77.87 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=33.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhc----CCceEEEEecChhh
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHF----SDCTVITIAHRITS 313 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~ 313 (362)
.+|.++++||+... |......+...+.... .+.++|++||+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45889999999876 8877777777775433 36789999998854
No 201
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.07 E-value=3.7e-07 Score=88.39 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=48.7
Q ss_pred cccEEEEEEEEEeCCCCCceee--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 113 QGEVDIHGLQVRYAPHLPLVLR--------------GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 113 ~~~i~~~~l~~~y~~~~~~vL~--------------~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.+.|+|+++.|+... ..|+ |+++.+.+|++++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~er-~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSR-LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSB-CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCc-cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 35689999999998754 5888 899999999999999999999999999999876
No 202
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.06 E-value=1.9e-06 Score=82.54 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=25.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
No 203
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.01 E-value=3.3e-05 Score=69.55 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPTAG 172 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G 172 (362)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997766555
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.01 E-value=1.3e-06 Score=86.52 Aligned_cols=67 Identities=18% Similarity=0.392 Sum_probs=44.4
Q ss_pred CCCCEEEEeCCCCCCCH-HHHHHHHHHHHhhc-CCceEEEEecCh-hhhhh-cCeEEE-EeCCEEEEecChh
Q 018040 269 KKSKVLVLDEATASVDT-ATDNLIQHTLGQHF-SDCTVITIAHRI-TSVID-SDMVLL-LSYGLIEEFDSPT 335 (362)
Q Consensus 269 ~~p~illLDEPts~LD~-~~~~~i~~~l~~~~-~~~tvi~itH~l-~~~~~-~Dri~v-l~~G~i~~~g~~~ 335 (362)
.+|++|++||+..-.+. .++..+...+.... .++.+|++||+. ..+.. .+++.- +..|.+++..+|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 66777888887643 568899999974 33222 222222 4456666666553
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.00 E-value=2.7e-05 Score=72.25 Aligned_cols=71 Identities=8% Similarity=0.025 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH----------HHHHHHHHHHhhc-----CCceEEEEecChhhh----
Q 018040 254 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTA----------TDNLIQHTLGQHF-----SDCTVITIAHRITSV---- 314 (362)
Q Consensus 254 SgGqrQRv~iAral~~~p~illLDEPts~LD~~----------~~~~i~~~l~~~~-----~~~tvi~itH~l~~~---- 314 (362)
++++++|..++++...+|.+|++||+.+-++.. ....+...+.... .+..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777788888888899999999998776532 2223444444332 124577788876432
Q ss_pred -hhcCeEEEEe
Q 018040 315 -IDSDMVLLLS 324 (362)
Q Consensus 315 -~~~Dri~vl~ 324 (362)
.++++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 2367665554
No 206
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.98 E-value=7.1e-07 Score=90.85 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=42.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
.+++++++++ +|+.++|+||||+|||||+++|++.+.+..|+|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3677788888 899999999999999999999999999988999887743
No 207
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=6.7e-07 Score=85.26 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=37.4
Q ss_pred ceeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCcc
Q 018040 131 LVLRGLTCTFLGGMK--TGIVGRTGSGKSTLIQTLFRIVEPTAG 172 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~~p~~G 172 (362)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 478889999999998 999999999999999999998766544
No 208
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.94 E-value=4.4e-06 Score=82.65 Aligned_cols=61 Identities=28% Similarity=0.452 Sum_probs=38.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCEeCCCCCHHHHhcCcEEEcCCCCCCc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 204 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 204 (362)
-.++|+|++|+|||||++.|+|... +.+|.+.++|.++.-++....++..++.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 3799999999999999999999853 678999999987643333334444555556555443
No 209
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.94 E-value=6.1e-07 Score=85.98 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=45.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 182 (362)
.+++++++++.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 3788889999999999999999999999999999999888888887666553
No 210
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.92 E-value=3.8e-06 Score=71.51 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
.|++++|+|++||||||++++|++.+.+ +.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 55554
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.89 E-value=1.1e-06 Score=93.35 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=29.1
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
+.+++|+.+.|+||+|||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 36889999999999999999999999998754
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.89 E-value=1.9e-06 Score=74.22 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=32.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEeC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--LIAIDGIDI 181 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~i 181 (362)
++|++++|+|++||||||+.+.|.+.+++ .| .|.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 46999999999999999999999998766 56 666676443
No 213
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.87 E-value=2.7e-06 Score=81.78 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 182 (362)
++.+++|+|++|||||||++.|+|.+.+..|+|.+.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 46799999999999999999999998888888888776554
No 214
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.85 E-value=3.4e-05 Score=72.91 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=28.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.|+.+.--+++|+.+.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4666654589999999999999999999877764
No 215
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.83 E-value=8.7e-06 Score=68.49 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=25.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455566554 999999999999999999873
No 216
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.80 E-value=4.7e-06 Score=75.27 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=32.5
Q ss_pred eeeeeEEEe---CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 018040 133 LRGLTCTFL---GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177 (362)
Q Consensus 133 L~~isl~i~---~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~ 177 (362)
|.++|+++. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 666677666 8999999999999999999999999887 6666543
No 217
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.79 E-value=5.8e-06 Score=78.89 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 170 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~ 170 (362)
.++..+.|.||+|+|||||++.+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877553
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.76 E-value=3.8e-06 Score=73.45 Aligned_cols=56 Identities=29% Similarity=0.319 Sum_probs=37.4
Q ss_pred EEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--------CCCCccEEEECCE
Q 018040 122 QVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--------VEPTAGLIAIDGI 179 (362)
Q Consensus 122 ~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--------~~p~~G~I~i~g~ 179 (362)
+++|++.. .+++++|+..+++ .++++|++|+|||||++.+.+- ..++.+.+.++|.
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 45566543 5889999988877 5899999999999999999862 2234456666654
No 219
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.72 E-value=2.2e-05 Score=68.00 Aligned_cols=33 Identities=33% Similarity=0.340 Sum_probs=20.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++++++..++. .++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 788999988877 789999999999999999997
No 220
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.71 E-value=2.5e-05 Score=66.56 Aligned_cols=27 Identities=41% Similarity=0.523 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++|.+++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.70 E-value=6.4e-06 Score=72.95 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=37.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEe
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--LIAIDGID 180 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~ 180 (362)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34568999999999999999999999999987788 88887543
No 222
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.67 E-value=0.00016 Score=67.66 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.++++..+.|.||+|+|||||++++++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 456788999999999999999999998763
No 223
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.66 E-value=0.00019 Score=69.02 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+++.|.|++|+|||||...++.-.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997777543
No 224
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.63 E-value=5.9e-06 Score=72.76 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+..+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998764
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.58 E-value=2.3e-05 Score=68.48 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
..+.|.||+|+|||||+++++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999976543
No 226
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.58 E-value=1.6e-05 Score=72.08 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEE--------ECCEeCCCCC-HHHHhcCcEEEc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIA--------IDGIDISSIG-LHDLRSRLSIIP 197 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~--------i~g~~i~~~~-~~~~r~~i~~v~ 197 (362)
.-+++|.||+||||||+.+.|+ |+...+.|.++ -.|.++.+.. ..++...+.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~ 75 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGV 75 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEE
Confidence 4589999999999999999998 55555666662 3455543321 233445555655
No 227
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.56 E-value=1.3e-05 Score=72.18 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHH
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
..|+.++++|||||||||++.+++
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 468999999999999999887664
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.48 E-value=5.2e-05 Score=66.99 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=24.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
.+.++++.+ .+.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 345556655 499999999999999999885
No 229
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.48 E-value=8.5e-05 Score=69.94 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
+..+.|.||+|+|||||++++++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467899999999999999999986643
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.48 E-value=8.7e-06 Score=76.48 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=47.9
Q ss_pred EEEEEEEeCCCCCceeee-eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC
Q 018040 118 IHGLQVRYAPHLPLVLRG-LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 183 (362)
Q Consensus 118 ~~~l~~~y~~~~~~vL~~-isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 183 (362)
.+++...|++.. ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 77 ~~~l~~~~~~~~----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 77 YDELSNLFGGDK----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHTTCSC----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHhcccc----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 444555565431 45 777766 99999999999999999999999999888999987777643
No 231
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.46 E-value=0.0002 Score=65.82 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++.-+.|.||+|+|||||+++++..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456779999999999999999998864
No 232
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.46 E-value=0.00012 Score=61.66 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998653
No 233
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.46 E-value=3.3e-05 Score=66.69 Aligned_cols=39 Identities=26% Similarity=0.435 Sum_probs=32.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-AIDG 178 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g 178 (362)
..+|.++.|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34689999999999999999999999887766766 3443
No 234
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.46 E-value=0.00014 Score=67.64 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 174 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 174 (362)
...+.|+||+|+||||++++|++.+.+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999887766644
No 235
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=3.5e-05 Score=72.95 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=34.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
++.++++|| ...+++.....+.+.+.+......+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 67888888888888887765556677788776543
No 236
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.45 E-value=8.5e-05 Score=65.32 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=34.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
.+|.++++||+-. +|+.....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999765 78887778877776554567888888876644
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.44 E-value=5.3e-05 Score=65.48 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=26.5
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 135 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 135 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 238
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.42 E-value=7.8e-05 Score=63.67 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 239
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.42 E-value=8.4e-06 Score=78.64 Aligned_cols=57 Identities=32% Similarity=0.376 Sum_probs=36.4
Q ss_pred ccEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 114 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 114 ~~i~~~~l~~~y~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
+.+.+++++..|+.. .++++++|+| +|+|++|+|||||++.|++...+..|.+..++
T Consensus 16 ~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -----CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 468889998888643 4788999876 99999999999999999987665555544333
No 240
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.40 E-value=6.5e-05 Score=73.18 Aligned_cols=41 Identities=29% Similarity=0.479 Sum_probs=33.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC-----------CCCCccEEEECCE
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRI-----------VEPTAGLIAIDGI 179 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-----------~~p~~G~I~i~g~ 179 (362)
.+..|..++|||++|+|||||+++|+|. ..|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456889999999999999999999998 6788888887663
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.38 E-value=0.00044 Score=65.12 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=24.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
-+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
No 242
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.36 E-value=5.3e-05 Score=67.21 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
No 243
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.33 E-value=0.00023 Score=70.62 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 256 GQRQLVCLARVLLKKSKVLVLDEATA-SVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 256 GqrQRv~iAral~~~p~illLDEPts-~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
.|.+....+...+.+++++|+..... ++... ...+.+.+++ .++.+|++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 47777778888888898888765544 34443 4556666654 467888888877654
No 244
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.32 E-value=0.00036 Score=63.32 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.++|+|++|+|||||++.|+|--.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999998643
No 245
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.30 E-value=9.9e-05 Score=64.46 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 246
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.28 E-value=8.7e-05 Score=64.11 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEe
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGID 180 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~ 180 (362)
-.+++|+|++|||||||++.|++.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 3677776644
No 247
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.26 E-value=0.00099 Score=55.11 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecC
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 310 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 310 (362)
+..+|++||.- .|++..+..+.+.+.....+..+|.+|+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 34689999984 67888888888888544445566666653
No 248
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.25 E-value=9.3e-05 Score=71.61 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhhhhhcCeE
Q 018040 260 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMV 320 (362)
Q Consensus 260 Rv~iAral~~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~Dri 320 (362)
+.+|+++|..+|+++++|||+ |+++.. ..++....|.+++.++|..+....+||+
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl 253 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRI 253 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHH
Confidence 569999999999999999999 776533 3444444578999999987643336664
No 249
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.24 E-value=0.00014 Score=62.25 Aligned_cols=26 Identities=50% Similarity=0.704 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPT 170 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~ 170 (362)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=5.7e-05 Score=66.07 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
..+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 4689999999999999999998865 455565533
No 251
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.12 E-value=0.00017 Score=65.60 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=31.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 181 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 181 (362)
+++.++.|+|++||||||+.+.|...+. .|.+.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 4567899999999999999999998765 35677777543
No 252
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.11 E-value=0.0014 Score=64.68 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=29.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 466665458999999999999999999998777644
No 253
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.11 E-value=0.00018 Score=65.32 Aligned_cols=43 Identities=26% Similarity=0.391 Sum_probs=28.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
+++++.+++| +.|+||+|+|||||+++|++.+... -+.+++.+
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 3344444444 8999999999999999999876422 35555533
No 254
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.10 E-value=0.00018 Score=69.73 Aligned_cols=57 Identities=26% Similarity=0.361 Sum_probs=43.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHhhc-CCceEEEEecChhhhh-------------hcCeEEEEeCC
Q 018040 270 KSKVLVLDEATASVD---TATDNLIQHTLGQHF-SDCTVITIAHRITSVI-------------DSDMVLLLSYG 326 (362)
Q Consensus 270 ~p~illLDEPts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-------------~~Dri~vl~~G 326 (362)
.|.++++||.-.-++ +.....+.+.+++.+ .+..++++||+++.+. .|+..+++...
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 588999999998885 667778888887754 4789999999987553 26667776643
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.08 E-value=0.00024 Score=60.86 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 256
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.99 E-value=7.1e-05 Score=71.77 Aligned_cols=36 Identities=36% Similarity=0.506 Sum_probs=32.4
Q ss_pred eeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCC
Q 018040 132 VLRGLTCTFLGGMK--TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 132 vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 67788888899999 9999999999999999999864
No 257
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.97 E-value=0.00078 Score=57.75 Aligned_cols=35 Identities=43% Similarity=0.705 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc-C----CCCCcc----EEEECCE
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR-I----VEPTAG----LIAIDGI 179 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g-l----~~p~~G----~I~i~g~ 179 (362)
+++|+|++|+|||||++.+.+ . +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 689999999999999976654 3 455655 4555553
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.96 E-value=0.00045 Score=58.70 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998664
No 259
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.96 E-value=0.00038 Score=62.47 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999863
No 260
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.00076 Score=64.10 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
No 261
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.95 E-value=3.6e-07 Score=84.39 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=62.2
Q ss_pred ccccchhhhccCCCCCChhHHHHHHHHHHhcCCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHhhcCCceEEE
Q 018040 238 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV--LVLDEATASVDTAT---------DNLIQHTLGQHFSDCTVIT 306 (362)
Q Consensus 238 ~~~~l~~~~~~~g~~LSgGqrQRv~iAral~~~p~i--llLDEPts~LD~~~---------~~~i~~~l~~~~~~~tvi~ 306 (362)
++..+++.+++++..+|+| ||++++++++.+|++ +|+||+|+++|... +...++.+....+|+|.+.
T Consensus 158 l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~ 235 (261)
T 2eyu_A 158 LSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLE 235 (261)
T ss_dssp HHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHH
T ss_pred HHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHH
Confidence 4557888999999999999 999999999999999 99999999999863 3356777777778999998
Q ss_pred EecChh
Q 018040 307 IAHRIT 312 (362)
Q Consensus 307 itH~l~ 312 (362)
++|++.
T Consensus 236 ~a~r~~ 241 (261)
T 2eyu_A 236 DAMEAS 241 (261)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 888875
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.94 E-value=0.005 Score=60.72 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 176 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 176 (362)
++.+++++|++||||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999999877654344544
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.91 E-value=0.00048 Score=57.88 Aligned_cols=23 Identities=22% Similarity=0.062 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 264
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.90 E-value=0.0039 Score=56.08 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..-+.|.||+|+||||++++++..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998754
No 265
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.90 E-value=0.00056 Score=65.90 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=26.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
+++..+++.+ .+.+|+|+|||||||++.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4677778777 499999999999999999886
No 266
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.90 E-value=0.00075 Score=64.96 Aligned_cols=36 Identities=42% Similarity=0.765 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc-----------CCCCCccEEEECC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFR-----------IVEPTAGLIAIDG 178 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~g-----------l~~p~~G~I~i~g 178 (362)
|-.++|||.+|+|||||++.|++ -..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3467778887765
No 267
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.88 E-value=0.0046 Score=57.14 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.-+.|.||+|+||||+.+.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888765
No 268
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.86 E-value=0.0044 Score=59.66 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
+++|+++.|.||.|+|||||...++.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999999976654
No 269
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.86 E-value=0.00015 Score=63.56 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEPT 170 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p~ 170 (362)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887643
No 270
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.84 E-value=0.0038 Score=59.62 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+..-+.|.||+|+|||||+++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346679999999999999999998764
No 271
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.84 E-value=0.00052 Score=59.36 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 272
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.83 E-value=0.00063 Score=58.17 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+|.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998644
No 273
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.82 E-value=0.00054 Score=59.35 Aligned_cols=31 Identities=39% Similarity=0.473 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
..+++|+|++||||||+.+.|+.. |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 357999999999999999999985 6666654
No 274
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.79 E-value=0.0012 Score=59.31 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecCh-----------hhhhhcCeEEEEe
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRI-----------TSVIDSDMVLLLS 324 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l-----------~~~~~~Dri~vl~ 324 (362)
+++++++||.-- |+...-+.+ ..+.. .+.+||++-|+. ..+..||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665433333 22322 378999999932 2233499998754
No 275
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.78 E-value=0.00057 Score=58.31 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.77 E-value=0.00068 Score=56.74 Aligned_cols=19 Identities=42% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 018040 145 KTGIVGRTGSGKSTLIQTL 163 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l 163 (362)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 277
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.75 E-value=0.00076 Score=59.49 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHc
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.+-+++|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
No 278
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.74 E-value=0.00074 Score=62.81 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
|..+.|+||+||||||+.+.|+.-++ .|.+.+++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 56899999999999999999987543 35677765
No 279
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.0029 Score=54.60 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=31.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhh
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 313 (362)
.++.++++||. ..+++.....+...+.....+..+|++|+....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 36889999996 446777777777777765556677777776654
No 280
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.73 E-value=0.00062 Score=58.42 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999997643
No 281
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.73 E-value=0.00072 Score=58.94 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 018040 146 TGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 146 ~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.|+||||||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987543
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.71 E-value=0.00088 Score=57.28 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997644
No 283
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.70 E-value=0.00076 Score=61.44 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+++|+||+|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 284
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.64 E-value=0.0052 Score=69.64 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=30.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-AIDG 178 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g 178 (362)
+++|+.+.|.||+|+|||||+..++.......|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999998877654433443 3344
No 285
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.62 E-value=0.0012 Score=57.21 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+|.+++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 286
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.62 E-value=0.0035 Score=61.92 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=26.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 133 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 133 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 444433479999999999999999999866654
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.59 E-value=0.001 Score=56.78 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++..+.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998543
No 288
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.56 E-value=0.00094 Score=56.74 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 289
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.55 E-value=0.0013 Score=57.16 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
+|.+++|.|+.||||||+.+.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999876553
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.55 E-value=0.0012 Score=55.72 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=24.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 177 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~ 177 (362)
.++.|+|++||||||+.+.|... ..|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 47899999999999999999872 12555554
No 291
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.53 E-value=0.0019 Score=60.83 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=34.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc----CCCCCccEEEE
Q 018040 131 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR----IVEPTAGLIAI 176 (362)
Q Consensus 131 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g----l~~p~~G~I~i 176 (362)
..+++..+.+ .|.-++|.|+||+||||+...+.+ ++..+...|..
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 3678887777 789999999999999999999987 44444444443
No 292
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.53 E-value=0.0011 Score=60.68 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
No 293
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.50 E-value=0.0013 Score=57.25 Aligned_cols=26 Identities=31% Similarity=0.189 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+|.+++|.|+.||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 294
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.50 E-value=0.0013 Score=57.31 Aligned_cols=28 Identities=25% Similarity=0.219 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|.+++|.|+.||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999998543
No 295
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.49 E-value=0.0014 Score=56.23 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998644
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.49 E-value=0.00082 Score=57.68 Aligned_cols=26 Identities=27% Similarity=0.274 Sum_probs=22.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999987653
No 297
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.46 E-value=0.011 Score=57.87 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.+..++.|+|++||||||+.+.|+.-
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998764
No 298
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0028 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 299
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.46 E-value=0.0016 Score=55.71 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
No 300
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.45 E-value=0.0015 Score=54.05 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0015 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
=.++++|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999864
No 302
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.39 E-value=0.0014 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998754
No 303
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.38 E-value=0.0018 Score=53.28 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 304
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.38 E-value=0.0018 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998853
No 305
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.37 E-value=0.0019 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998753
No 306
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.37 E-value=0.0016 Score=53.42 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.35 E-value=0.0018 Score=55.33 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987553
No 308
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.34 E-value=0.002 Score=53.53 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998754
No 309
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.34 E-value=0.0019 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 310
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.33 E-value=0.0016 Score=56.34 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999754
No 311
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.33 E-value=0.002 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.31 E-value=0.002 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 313
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.31 E-value=0.002 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 314
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.30 E-value=0.002 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 315
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.30 E-value=0.0019 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+--
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 316
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.29 E-value=0.0015 Score=55.45 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.++.|.|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998544
No 317
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.29 E-value=0.0021 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999988643
No 318
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.002 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 319
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.27 E-value=0.0019 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 320
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.27 E-value=0.0022 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 321
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.26 E-value=0.0021 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 322
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.26 E-value=0.0021 Score=53.89 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 323
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.25 E-value=0.002 Score=54.78 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998764
No 324
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.24 E-value=0.0027 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.-.++++|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 325
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.24 E-value=0.0023 Score=55.03 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++.+++|+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998654
No 326
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.23 E-value=0.0077 Score=57.01 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 313 (362)
++.++++||.- .++......+.+.+.+...+..+|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999963 46777777788877665455678888887654
No 327
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.23 E-value=0.0024 Score=54.87 Aligned_cols=23 Identities=43% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 328
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.23 E-value=0.0027 Score=56.04 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++|-++.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998654
No 329
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.21 E-value=0.0024 Score=58.89 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|++|+|||||++.+.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 330
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.21 E-value=0.0025 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 331
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.20 E-value=0.0025 Score=54.32 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999986
No 332
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.19 E-value=0.0025 Score=53.84 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.17 E-value=0.0026 Score=56.44 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++.++.|+|+.||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 334
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.16 E-value=0.0024 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 335
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.15 E-value=0.0027 Score=54.30 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 336
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.14 E-value=0.0027 Score=55.61 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|+.||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999996543
No 337
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.14 E-value=0.0022 Score=58.84 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|++|+|||||++.|++--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 338
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.14 E-value=0.0028 Score=52.63 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|+.|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999975
No 339
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.13 E-value=0.0028 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.12 E-value=0.0031 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 341
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.12 E-value=0.0029 Score=52.23 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999975
No 342
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.11 E-value=0.003 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.++|+|+.|+|||||++.+.|-...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999987653
No 343
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.10 E-value=0.0027 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.09 E-value=0.0034 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+-+++|+|+.||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998643
No 345
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.07 E-value=0.0031 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 346
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.07 E-value=0.0031 Score=53.66 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 347
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0031 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
No 348
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.06 E-value=0.0019 Score=54.55 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998863
No 349
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.06 E-value=0.0031 Score=53.03 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 350
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.06 E-value=0.0033 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 351
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.05 E-value=0.0031 Score=59.01 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.++|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 352
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.05 E-value=0.0035 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 353
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.04 E-value=0.0029 Score=53.23 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+++|.|+.||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.03 E-value=0.0033 Score=55.13 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|+.||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997544
No 355
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.03 E-value=0.0034 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 356
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.02 E-value=0.0037 Score=52.50 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
No 357
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.01 E-value=0.0034 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..+++|.|+.||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998544
No 358
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.00 E-value=0.0033 Score=56.91 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|++|||||||++.|+|--
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 359
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.99 E-value=0.0038 Score=56.85 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++.++.|+|++||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 360
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.98 E-value=0.0022 Score=56.14 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
-.++|+|++|+|||||++.++|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999863
No 361
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.98 E-value=0.003 Score=53.86 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
No 362
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.98 E-value=0.0036 Score=53.34 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..+++|+|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997643
No 363
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.98 E-value=0.0029 Score=55.84 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.++.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998654
No 364
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.97 E-value=0.0034 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 365
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.95 E-value=0.0038 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 366
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.94 E-value=0.0038 Score=52.62 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999854
No 367
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.94 E-value=0.0038 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 368
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.94 E-value=0.0037 Score=58.52 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-+++|+|+.|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999985
No 369
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.93 E-value=0.0035 Score=57.11 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999873
No 370
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.93 E-value=0.0039 Score=53.13 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 371
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.92 E-value=0.004 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 372
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0037 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 373
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.91 E-value=0.031 Score=64.34 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+++.|.||+|+|||||+..++.-.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999987776543
No 374
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0038 Score=53.38 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 689999999999999999987
No 375
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.90 E-value=0.004 Score=52.77 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.=.++++|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999864
No 376
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.90 E-value=0.0039 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 377
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.90 E-value=0.0042 Score=54.19 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-+++|+|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999865
No 378
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.025 Score=55.66 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+++-.=+.+.||.|+|||+|.+++++...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 55667799999999999999999998643
No 379
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.88 E-value=0.0039 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 380
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.88 E-value=0.0043 Score=52.83 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 381
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.87 E-value=0.0043 Score=52.20 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 382
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.87 E-value=0.0042 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 383
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.85 E-value=0.004 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 78999999999999999998753
No 384
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.84 E-value=0.0047 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 385
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.84 E-value=0.0065 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=27.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++..-+.+ .|..+.|+||+|||||||...|+.-.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 456555554 58899999999999999999887643
No 386
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.83 E-value=0.0053 Score=58.39 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
++..+.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 467899999999999999999998663
No 387
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.82 E-value=0.0043 Score=52.23 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 388
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.82 E-value=0.0042 Score=57.72 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
No 389
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.81 E-value=0.0046 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 390
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.81 E-value=0.0043 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 391
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.80 E-value=0.0047 Score=52.75 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 392
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.80 E-value=0.004 Score=59.99 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|||++|+|||||+++|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
No 393
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.80 E-value=0.0044 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 394
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.79 E-value=0.016 Score=60.82 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+.++||+|+|||++.++|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 395
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.78 E-value=0.0046 Score=54.68 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999874
No 396
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.78 E-value=0.005 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++-+++|.|+.||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997543
No 397
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.76 E-value=0.0046 Score=56.81 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 398
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.75 E-value=0.0049 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 399
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.005 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
No 400
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0052 Score=52.20 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 401
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.73 E-value=0.0038 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998653
No 402
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.73 E-value=0.0052 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
=.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 478999999999999999998653
No 403
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.73 E-value=0.0052 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 404
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.73 E-value=0.005 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
-.++|+|+.|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 405
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.73 E-value=0.0053 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 406
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0048 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 407
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.72 E-value=0.0048 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 408
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.0053 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 409
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.72 E-value=0.0046 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998863
No 410
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0054 Score=52.59 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 411
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.71 E-value=0.0054 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|+.|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 412
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.71 E-value=0.0045 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 413
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.71 E-value=0.005 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|||||||++.+++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988753
No 414
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.68 E-value=0.0029 Score=58.93 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998744
No 415
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.68 E-value=0.0053 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|+|||||++.++|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999843
No 416
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.68 E-value=0.0052 Score=56.76 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.-+++|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 417
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.67 E-value=0.0065 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++++|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 418
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0053 Score=53.30 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 419
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.67 E-value=0.0061 Score=55.83 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 173 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~ 173 (362)
-.++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999876544443
No 420
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.65 E-value=0.0062 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.++++|++|+|||||++.+.+-..+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 6999999999999999999885443
No 421
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.64 E-value=0.0063 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 422
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.63 E-value=0.0062 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997543
No 423
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.63 E-value=0.0056 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++++|++|+|||||++.|+|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 424
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.62 E-value=0.0052 Score=56.53 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.|+|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 425
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.62 E-value=0.0065 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl 166 (362)
=.++++|+.|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 426
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.61 E-value=0.0063 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888753
No 427
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.60 E-value=0.08 Score=60.12 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|.++.|.||+|+|||||..-++.-
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999998766543
No 428
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.60 E-value=0.0061 Score=53.29 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 018040 145 KTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++++|+.|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 429
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.58 E-value=0.0062 Score=57.97 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997664
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.57 E-value=0.007 Score=56.98 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+.+++|+||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 431
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.56 E-value=0.006 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 432
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.56 E-value=0.0074 Score=50.68 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998765
No 433
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.56 E-value=0.0065 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
=.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998643
No 434
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.55 E-value=0.0064 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999997643
No 435
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.54 E-value=0.0069 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+|-++.|+|+.||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999997654
No 436
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.52 E-value=0.0064 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 437
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.52 E-value=0.0044 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=9.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 438
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.51 E-value=0.038 Score=51.37 Aligned_cols=44 Identities=23% Similarity=0.439 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHhhcCCceEEEEecChhhh
Q 018040 270 KSKVLVLDEATASVD-TATDNLIQHTLGQHFSDCTVITIAHRITSV 314 (362)
Q Consensus 270 ~p~illLDEPts~LD-~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 314 (362)
+++++++||.-. +. ......+...+.....+..+|++|++...+
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 789999999843 44 556667777776655567888888876643
No 439
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.48 E-value=0.017 Score=53.20 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 313 (362)
++.++++||.- .++......+.+.+.+...+..+|++|++...
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 48899999963 35556666677777665556678888877654
No 440
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.47 E-value=0.00046 Score=73.34 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=36.6
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 018040 136 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 182 (362)
Q Consensus 136 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 182 (362)
.++.+.+++.+.|+||+|+|||||.++|++.+. .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 356778999999999999999999999999875 345666666553
No 441
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.45 E-value=0.0064 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHc
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.=.++|+|+.|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999865
No 442
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.43 E-value=0.0074 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 443
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.42 E-value=0.02 Score=61.06 Aligned_cols=34 Identities=35% Similarity=0.386 Sum_probs=26.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEEC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAID 177 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~ 177 (362)
..+.|+||+|+|||++.++|...+....+ -|.+|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 47899999999999999999988754333 24444
No 444
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.42 E-value=0.0064 Score=54.58 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=22.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
..+|.++.|.|+.||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987654
No 445
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.38 E-value=0.0092 Score=52.89 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.+|.++.|.|+.||||||+++.|..-+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999876643
No 446
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.36 E-value=0.009 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 447
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.34 E-value=0.0097 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+..+.|+|+.||||||+.+.|+.-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 448
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.32 E-value=0.01 Score=58.80 Aligned_cols=36 Identities=36% Similarity=0.618 Sum_probs=29.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+++.+ +.+-+|++++|+|++|+|||||++.|++-..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 44444 5678899999999999999999999887544
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.31 E-value=0.0089 Score=55.14 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.28 E-value=0.0098 Score=53.67 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987654
No 451
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.28 E-value=0.004 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988854
No 452
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.26 E-value=0.0071 Score=53.01 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 453
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.26 E-value=0.0086 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++|+|+.|+|||||++.+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999998888643
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.25 E-value=0.0095 Score=56.31 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 455
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.25 E-value=0.013 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHH
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTL 163 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l 163 (362)
+++|+.+.|.|++|+|||||+.-+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999998544
No 456
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.24 E-value=0.0091 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999764
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.21 E-value=0.0092 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4789999999999999988874
No 458
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.20 E-value=0.0061 Score=51.79 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999854
No 459
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.19 E-value=0.03 Score=55.81 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=53.5
Q ss_pred hccCCCCCChhHHHHHHHHH--HhcC---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEe
Q 018040 246 VTENGENWSMGQRQLVCLAR--VLLK---------------KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIA 308 (362)
Q Consensus 246 ~~~~g~~LSgGqrQRv~iAr--al~~---------------~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~it 308 (362)
.......+||||+|-.-+|. |+++ .-.+++|||+ +-+|.+..+..++.++++ |.=+|++|
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliiat 449 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIAA 449 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEEC
Confidence 33345568999999544433 3222 1258999999 999999999999999866 66777888
Q ss_pred cChhhhh-hcCeEEEEe
Q 018040 309 HRITSVI-DSDMVLLLS 324 (362)
Q Consensus 309 H~l~~~~-~~Dri~vl~ 324 (362)
=. .+. .+|.++.+-
T Consensus 450 P~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE--NISPERGTTYKLV 464 (483)
T ss_dssp SS--SCCCSSSEEEECC
T ss_pred cc--hhhhccCceEEEE
Confidence 77 444 488888765
No 460
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.01 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 461
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.18 E-value=0.0097 Score=49.92 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999987654
No 462
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.18 E-value=0.011 Score=52.33 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+|.++.+-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 463
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.16 E-value=0.0045 Score=53.16 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=4.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.16 E-value=0.011 Score=52.87 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+|.+++|.|+.||||||+.+.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997664
No 465
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.13 E-value=0.018 Score=49.51 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=25.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 132 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 132 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
.++..-+ --.|.-+.|.|+||+|||||...+..
T Consensus 6 ~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3444443 34588999999999999999988765
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.13 E-value=0.012 Score=55.38 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
...+.|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998765
No 467
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.08 E-value=0.011 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 468
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.07 E-value=0.013 Score=52.46 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
.+|.++.+.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999987654
No 469
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.03 E-value=0.013 Score=52.14 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
.+|.++.+-|+.||||||+++.|..-+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987765
No 470
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.97 E-value=0.0083 Score=57.41 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=22.8
Q ss_pred cCCCCCChhHHHHHHHHHHh---cC--CCCEEEEeCCC
Q 018040 248 ENGENWSMGQRQLVCLARVL---LK--KSKVLVLDEAT 280 (362)
Q Consensus 248 ~~g~~LSgGqrQRv~iAral---~~--~p~illLDEPt 280 (362)
+.|.++|+||+||.+++|+| ++ +++++++|||+
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 55677999999999999999 77 89999999997
No 471
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.93 E-value=0.092 Score=60.48 Aligned_cols=34 Identities=29% Similarity=0.240 Sum_probs=29.9
Q ss_pred ceeeeee--EEEeCCcEEEEEcCCCccHHHHHHHHH
Q 018040 131 LVLRGLT--CTFLGGMKTGIVGRTGSGKSTLIQTLF 164 (362)
Q Consensus 131 ~vL~~is--l~i~~Ge~~~ivG~nGsGKSTLl~~l~ 164 (362)
+.|+++. .-+++|+.+.++||+|+|||||...+.
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4677776 469999999999999999999998876
No 472
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.93 E-value=0.012 Score=50.89 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 473
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.91 E-value=0.12 Score=48.54 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChhh
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 313 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 313 (362)
+.+++|+||+- .|.......+.+.+.+-..+..+|++|++.+.
T Consensus 108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPER 150 (334)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 57899999974 35566666677777554445677888888753
No 474
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.87 E-value=0.0095 Score=54.09 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
+++.+++|.|+.||||||+.+.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
No 475
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.77 E-value=0.016 Score=51.55 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 140 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 140 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+++..++.|+||.||||+|..+.|+--+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998544
No 476
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.72 E-value=0.019 Score=53.03 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEP 169 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p 169 (362)
-.++++|.+|+|||||++.|.|-...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCcee
Confidence 47899999999999999999987543
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.71 E-value=0.016 Score=56.36 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.+++|+||+|||||||...|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999988654
No 478
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.71 E-value=0.018 Score=53.80 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
+-+++++|+.|+|||||++.+.+-.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999988753
No 479
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.64 E-value=0.015 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4678999999999999999999986
No 480
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.51 E-value=0.0041 Score=56.40 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=22.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 139 TFLGGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 139 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
..++| +.|.||+|+|||||+++++...
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33444 7899999999999999999743
No 481
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.46 E-value=0.015 Score=55.89 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
++..++++|++|+|||||++.|.|-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5788999999999999999999986
No 482
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.44 E-value=0.017 Score=56.67 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999884
No 483
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.43 E-value=0.019 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|++++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 484
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.42 E-value=0.023 Score=48.93 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=32.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecChh-----------hhhhcCeEEEEeC
Q 018040 270 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT-----------SVIDSDMVLLLSY 325 (362)
Q Consensus 270 ~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~-----------~~~~~Dri~vl~~ 325 (362)
+++++++||.-- +++.....+..... .+..|++..++.+ .+..||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999854 55443333322222 3778888888554 3345999987764
No 485
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.41 E-value=0.014 Score=51.06 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHH-HHcC
Q 018040 145 KTGIVGRTGSGKSTLIQT-LFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~-l~gl 166 (362)
.++++|+.|+|||||++. +.|-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999998 5554
No 486
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.40 E-value=0.013 Score=55.81 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 487
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.40 E-value=0.0073 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHc
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~g 165 (362)
=.++++|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3689999999999999988764
No 488
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.34 E-value=0.0062 Score=59.94 Aligned_cols=37 Identities=30% Similarity=0.261 Sum_probs=28.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID 180 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 180 (362)
.+++++|++|+||||++..|++.+.....+|.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5899999999999999999999876444456553333
No 489
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.24 E-value=0.018 Score=54.91 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 144 MKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 144 e~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
-+++|+|+.|+|||||++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987653
No 490
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.19 E-value=0.026 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++.|+||.||||+|..+.|+.-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
No 491
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.09 E-value=0.029 Score=53.38 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=26.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 134 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 134 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
+.+.++++---.++|+|.++||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 455566665557999999999999999998864
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.07 E-value=0.031 Score=49.13 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIVE 168 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 168 (362)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999987664
No 493
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.06 E-value=0.023 Score=57.66 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
.++|+|+.|+|||||++.|+|--
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999864
No 494
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.05 E-value=0.025 Score=56.11 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.|=.++|+|++|+|||||++.|+|-
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3556999999999999999999874
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.02 E-value=0.005 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 018040 145 KTGIVGRTGSGKSTLIQTLFRI 166 (362)
Q Consensus 145 ~~~ivG~nGsGKSTLl~~l~gl 166 (362)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.97 E-value=0.026 Score=53.38 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=29.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 018040 141 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 178 (362)
Q Consensus 141 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 178 (362)
.+|..+.|.||+|+||||+++.++..+......+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 34678999999999999999999988764434445444
No 497
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=93.87 E-value=0.029 Score=58.46 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 142 GGMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 142 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
++=.++|+|+.|+|||||+++|+|--
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45579999999999999999999853
No 498
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.84 E-value=0.13 Score=46.06 Aligned_cols=51 Identities=22% Similarity=0.128 Sum_probs=37.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhhcCCceEEEEecC-----------hhhhhhcCeEEEEe
Q 018040 269 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR-----------ITSVIDSDMVLLLS 324 (362)
Q Consensus 269 ~~p~illLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----------l~~~~~~Dri~vl~ 324 (362)
.+.+++++||.--..| ...+.+.+.+ .+..||+..++ ...+..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988765 4445555544 57899999999 23445599998765
No 499
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.83 E-value=0.025 Score=57.82 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 018040 143 GMKTGIVGRTGSGKSTLIQTLFRIV 167 (362)
Q Consensus 143 Ge~~~ivG~nGsGKSTLl~~l~gl~ 167 (362)
--+++|+|+.|+|||||++.|+|--
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3578999999999999999999864
No 500
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.80 E-value=0.037 Score=52.29 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 018040 138 CTFLGGMKTGIVGRTGSGKSTLIQTLFR 165 (362)
Q Consensus 138 l~i~~Ge~~~ivG~nGsGKSTLl~~l~g 165 (362)
--+++|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999998875
Done!