BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018041
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 159/272 (58%), Gaps = 12/272 (4%)
Query: 37 EIPVISLAGIDDVGGKRAEIC-KKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFAL 95
++P I L I+ K E C +++ +A DWG+ +++HG+ A L+ + + EFF+L
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 96 PPEEKLKF--DMSGGKKGGF--IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPE 151
EEK K+ D + GK G+ ++++ G++ +W + + ++P++ RD S WP P
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQL--EWEDYFFHLAYPEEKRDLSIWPKTPS 163
Query: 152 GWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQP 208
++E T EY+ L +A K+ + LS +GLE + L K +++ ++ +NYYPKCPQP
Sbjct: 164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 223
Query: 209 DLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGDHGHYLSNG 268
+L LG++ HTD +T +L + V GLQ + GK W+T + + + V+++GD LSNG
Sbjct: 224 ELALGVEAHTDVSALTFILHNMVPGLQLFYE-GK-WVTAKCVPDSIVMHIGDTLEILSNG 281
Query: 269 RFKNADHQAVVNSNSSRLSIATFQNPAPEATV 300
++K+ H+ +VN R+S A F P + V
Sbjct: 282 KYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 159/272 (58%), Gaps = 12/272 (4%)
Query: 37 EIPVISLAGIDDVGGKRAEIC-KKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFAL 95
++P I L I+ K E C +++ +A DWG+ +++HG+ A L+ + + EFF+L
Sbjct: 45 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 104
Query: 96 PPEEKLKF--DMSGGKKGGF--IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPE 151
EEK K+ D + GK G+ ++++ G++ +W + + ++P++ RD S WP P
Sbjct: 105 SVEEKEKYANDQATGKIQGYGSKLANNASGQL--EWEDYFFHLAYPEEKRDLSIWPKTPS 162
Query: 152 GWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQP 208
++E T EY+ L +A K+ + LS +GLE + L K +++ ++ +NYYPKCPQP
Sbjct: 163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 222
Query: 209 DLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGDHGHYLSNG 268
+L LG++ HTD +T +L + V GLQ + GK W+T + + + V+++GD LSNG
Sbjct: 223 ELALGVEAHTDVSALTFILHNMVPGLQLFYE-GK-WVTAKCVPDSIVMHIGDTLEILSNG 280
Query: 269 RFKNADHQAVVNSNSSRLSIATFQNPAPEATV 300
++K+ H+ +VN R+S A F P + V
Sbjct: 281 KYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 312
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 157/272 (57%), Gaps = 12/272 (4%)
Query: 37 EIPVISLAGIDDVGGKRAEIC-KKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFAL 95
++P I L I+ K E C +++ +A DWG+ +++HG+ A L + + EFF+L
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSL 105
Query: 96 PPEEKLKF--DMSGGKKGGF--IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPE 151
EEK K+ D + GK G+ ++++ G++ +W + + ++P++ RD S WP P
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQL--EWEDYFFHLAYPEEKRDLSIWPKTPS 163
Query: 152 GWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQP 208
++E T EY+ L +A K+ + LS +GLE + L K +++ ++ +NYYPKCPQP
Sbjct: 164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQP 223
Query: 209 DLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGDHGHYLSNG 268
+L LG++ HTD +T +L + V GLQ + GK W+T + + + V ++GD LSNG
Sbjct: 224 ELALGVEAHTDVSALTFILHNXVPGLQLFYE-GK-WVTAKCVPDSIVXHIGDTLEILSNG 281
Query: 269 RFKNADHQAVVNSNSSRLSIATFQNPAPEATV 300
++K+ H+ +VN R+S A F P + V
Sbjct: 282 KYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 146/270 (54%), Gaps = 17/270 (6%)
Query: 38 IPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPP 97
P+ISL ++ G +RA + I +ACE+WG F++V+HG+ ++ + + +
Sbjct: 4 FPIISLDKVN--GVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 98 EEKLKFDMSGGKKGGFIVSSHLQGEVV-KDWREIVTYFSFPKQSRDYSRWPDKPEGWMEV 156
E++ K ++ G +Q EV DW T+F + S PD E + EV
Sbjct: 62 EQRFKELVASKALEG------VQAEVTDXDWES--TFFLKHLPISNISEVPDLDEEYREV 113
Query: 157 TKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVNYYPKCPQPDLTLG 213
++++ +L +A +LL++L E +GLEK L A + V+ YP CP+PDL G
Sbjct: 114 XRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKG 173
Query: 214 LKRHTDPGTITLLLQD-QVGGLQATKDNGKTWITVQPIEGAFVVNLGDHGHYLSNGRFKN 272
L+ HTD G I LL QD +V GLQ KD WI V P + VVNLGD ++NG++K+
Sbjct: 174 LRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPXRHSIVVNLGDQLEVITNGKYKS 231
Query: 273 ADHQAVVNSNSSRLSIATFQNPAPEATVYP 302
H+ + + +R S+A+F NP +A +YP
Sbjct: 232 VXHRVIAQKDGARXSLASFYNPGSDAVIYP 261
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 12/248 (4%)
Query: 56 ICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFI- 114
+++ + E +G + D+ +D I A FFALP E K ++ G G+I
Sbjct: 22 FAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIP 81
Query: 115 --------VSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMG 166
+ E R++ F D + WP + + + L G
Sbjct: 82 FGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXAD-NVWPAEIPAFKHDVSWLYNSLDG 140
Query: 167 VACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLL 226
K+LE ++ + LE++ D + + + +YP P+ + H D TITLL
Sbjct: 141 XGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLL 200
Query: 227 LQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNSSRL 286
L + GGL+ +G+ W+ + P G V+N+GD L+N + H+ VVN R
Sbjct: 201 LGAEEGGLEVLDRDGQ-WLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERR 258
Query: 287 SIATFQNP 294
+ + P
Sbjct: 259 GVPRYSTP 266
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 48/319 (15%)
Query: 37 EIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEF-FAL 95
+I V L G D R + ++I A D G F V+HG++ + +S T+ EF ++
Sbjct: 11 KIDVSPLFGDDQAAKMR--VAQQIDAASRDTGFFYAVNHGINVQRLSQKTK---EFHMSI 65
Query: 96 PPEEKLKFDMSGGKK-------GGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSR--- 145
PEEK + K G+ +S + V E Y + P + D+ R
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAV-----ESFCYLN-PNFTPDHPRIQA 119
Query: 146 ---------WPD--KPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACV--D 192
WPD K G+ + ++Y + G++ LL+ + A+G E+ + D
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 193 MDQKIVVNYYPKC-PQPDLT---------LGLKRHTDPGTITLLLQDQVGGLQATKDNGK 242
+V+ YP P P+ L + H D IT+L Q V LQ G
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG- 238
Query: 243 TWITVQPIEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPEATVYP 302
+ ++ + +++N G + +L+N +K H+ V N+ R S+ F N ++ + P
Sbjct: 239 -YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVIDP 296
Query: 303 LKIREGEKPVLEEPIPFSE 321
RE EP+ + +
Sbjct: 297 FDPREPNGKSDREPLSYGD 315
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 48/319 (15%)
Query: 37 EIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEF-FAL 95
+I V L G D R + ++I A D G F V+HG++ + +S T+ EF ++
Sbjct: 11 KIDVSPLFGDDQAAKMR--VAQQIDAASRDTGFFYAVNHGINVQRLSQKTK---EFHMSI 65
Query: 96 PPEEKLKFDMSGGKK-------GGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSR--- 145
PEEK + K G+ +S + V E Y + P + D+ R
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAV-----ESFCYLN-PNFTPDHPRIQA 119
Query: 146 ---------WPD--KPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACV--D 192
WPD K G+ + ++Y + G++ LL+ + A+G E+ + D
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 193 MDQKIVVNYYPKC-PQPDLT---------LGLKRHTDPGTITLLLQDQVGGLQATKDNGK 242
+V+ YP P P+ L + H D IT+L Q V LQ G
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG- 238
Query: 243 TWITVQPIEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPEATVYP 302
+ ++ + +++N G + +L+N +K H+ V N+ R S+ F N ++ + P
Sbjct: 239 -YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDSVIDP 296
Query: 303 LKIREGEKPVLEEPIPFSE 321
RE EP+ + +
Sbjct: 297 FDPREPNGKSDREPLSYGD 315
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 34/273 (12%)
Query: 46 IDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFAL-PPEEKLKFD 104
++ + + A+ K+ VE+ + G + +H +D +L+ R+ TE+ A E K +F
Sbjct: 4 LETIDYRAADSAKRFVESLRETGFGVLSNHPIDKELVE---RIYTEWQAFFNSEAKNEFX 60
Query: 105 MSGGKKGGFI---VSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYS 161
+ GF +S +G VKD +E Y +P W P+ Y
Sbjct: 61 FNRETHDGFFPASISETAKGHTVKDIKEY--YHVYP--------WGRIPDSLRANILAYY 110
Query: 162 DKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKI---------VVNYYPKCPQPDL-T 211
+K +A +LLE + E +A K + + + I +++Y P +
Sbjct: 111 EKANTLASELLEWIETYSPDEIKA--KFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGA 168
Query: 212 LGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGDHGHYLSNGRFK 271
+ H D IT+L GLQ +G +W+ V G ++N+GD S+G F
Sbjct: 169 IRAAAHEDINLITVLPTANEPGLQVKAKDG-SWLDVPSDFGNIIINIGDXLQEASDGYFP 227
Query: 272 NADHQAV----VNSNSSRLSIATFQNPAPEATV 300
+ H+ + + SR+S+ F +P P +
Sbjct: 228 STSHRVINPEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|4A8H|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N-(Phosphonoacetyl)-Putrescine
pdb|4A8H|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N-(Phosphonoacetyl)-Putrescine
pdb|4A8P|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|C Chain C, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|D Chain D, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|E Chain E, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|F Chain F, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
Length = 355
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 209 DLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGDHGHYLSNG 268
DL+L +K G LL+++ G+ + + +T ++ + + LG HG YL+ G
Sbjct: 21 DLSLKIKEAIKNGYYPQLLKNKSLGMIFQQSSTRTRVSFETA----MEQLGGHGEYLAPG 76
Query: 269 RFKNADHQAVVNSNS--SRL 286
+ + H+ + +++ SRL
Sbjct: 77 QIQLGGHETIEDTSRVLSRL 96
>pdb|3TXX|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|C Chain C, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|D Chain D, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|E Chain E, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|F Chain F, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|G Chain G, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|H Chain H, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|I Chain I, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|J Chain J, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|K Chain K, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|L Chain L, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
Length = 359
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 209 DLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGDHGHYLSNG 268
DL+L +K G LL+++ G+ + + +T ++ + + LG HG YL+ G
Sbjct: 41 DLSLKIKEAIKNGYYPQLLKNKSLGMIFQQSSTRTRVSFETA----MEQLGGHGEYLAPG 96
Query: 269 RFKNADHQAVVNSNS--SRL 286
+ + H+ + +++ SRL
Sbjct: 97 QIQLGGHETIEDTSRVLSRL 116
>pdb|1VRM|A Chain A, Crystal Structure Of The Apbe Protein (Tm1553) From
Thermotoga Maritima Msb8 At 1.58 A Resolution
Length = 325
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 123 VVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKE-YSDKLMGVACKLLEVLSEAM 179
+++D + I FSF + + D P W+EV +E YS L+ AC E+ A
Sbjct: 48 ILEDXKRITYKFSFTDERSVVKKINDHPNEWVEVDEETYS--LIKAACAFAELTDGAF 103
>pdb|4A8T|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis Lacking Its C-Terminal Helix, With
Bound N5-(Phosphonoacetyl)-L-Ornithine
Length = 339
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 209 DLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGDHGHYLSNG 268
DL+L +K G LL+++ G+ + + +T ++ + + LG HG YL+ G
Sbjct: 43 DLSLKIKEAIKNGYYPQLLKNKSLGMIFQQSSTRTRVSFETA----MEQLGGHGEYLAPG 98
Query: 269 RFKNADHQAVVNSNS--SRL 286
+ + H+ + +++ SRL
Sbjct: 99 QIQLGGHETIEDTSRVLSRL 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,393,426
Number of Sequences: 62578
Number of extensions: 489449
Number of successful extensions: 1285
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 18
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)