Query 018042
Match_columns 361
No_of_seqs 297 out of 2738
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 08:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2E-36 6.8E-41 280.4 24.8 321 20-359 5-348 (491)
2 3o7q_A L-fucose-proton symport 100.0 9.8E-31 3.4E-35 238.6 15.4 275 28-359 27-331 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 6.4E-31 2.2E-35 240.7 11.5 292 22-358 23-325 (451)
4 2gfp_A EMRD, multidrug resista 99.9 8.8E-27 3E-31 208.2 8.8 241 70-353 23-265 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 5.4E-23 1.8E-27 190.2 19.4 275 74-357 46-353 (491)
6 2xut_A Proton/peptide symporte 99.8 5.1E-19 1.7E-23 164.9 17.3 141 79-222 51-196 (524)
7 2cfq_A Lactose permease; trans 99.8 5.9E-20 2E-24 166.3 1.0 250 74-359 35-295 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 8.6E-12 2.9E-16 113.6 16.1 148 74-224 280-433 (451)
9 2cfq_A Lactose permease; trans 99.3 6E-12 2E-16 113.6 10.4 146 80-228 257-404 (417)
10 4gc0_A D-xylose-proton symport 99.3 1.5E-11 5.1E-16 113.4 12.6 152 77-228 307-467 (491)
11 3o7q_A L-fucose-proton symport 99.2 1.1E-10 3.9E-15 105.7 13.3 145 75-224 288-432 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.2 7.6E-11 2.6E-15 108.6 12.3 145 78-226 315-474 (491)
13 2gfp_A EMRD, multidrug resista 98.7 2.3E-09 8E-14 95.0 2.5 128 77-210 230-362 (375)
14 2xut_A Proton/peptide symporte 98.6 4.9E-08 1.7E-12 90.6 8.0 139 84-223 337-501 (524)
15 2g9p_A Antimicrobial peptide l 63.3 4.9 0.00017 18.5 1.7 14 101-114 2-15 (26)
16 4dve_A Biotin transporter BIOY 33.2 1.1E+02 0.0037 23.7 6.1 24 89-112 100-123 (198)
17 3arc_T Photosystem II reaction 24.4 64 0.0022 16.5 2.2 9 221-229 20-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2e-36 Score=280.41 Aligned_cols=321 Identities=22% Similarity=0.356 Sum_probs=252.8
Q ss_pred cchHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHH
Q 018042 20 KITAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVAS 99 (361)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (361)
..+++.+.++++++++.+++|||.++++.+ ++...+.+..+. ..+.+.+..+.+++.+++.+|..+|+
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~ 72 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGG 72 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888999999999999998775 344444332211 11113356778999999999999999
Q ss_pred HhhHHHHHhhchhHHHHHHHHHHHHHHHHhh------------------hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 018042 100 FVASSVTRAFGRKPSVLMGGAAFLAGSALGG------------------AAVNVYMLIFGRLLLGVGVGFANQSVPLYLS 161 (361)
Q Consensus 100 ~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~ 161 (361)
+++|+++||+|||++++++.+++.+++++++ +++|+++++++|++.|++.|...+..+.+++
T Consensus 73 ~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~ 152 (491)
T 4gc0_A 73 ALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIA 152 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 4789999999999999999999999999999
Q ss_pred hcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccC-----CCcchHHHHHhhHHHHHHHHHhcccccCChhHHHhhCC
Q 018042 162 EMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK-----GGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKS 236 (361)
Q Consensus 162 e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~ 236 (361)
|+.|+++|++..++.+.+..+|.++++.++....... ...+||+.+.+..++.++..+..++.||||+|+..+++
T Consensus 153 E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~ 232 (491)
T 4gc0_A 153 ELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK 232 (491)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred hhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence 9999999999999999999999999988877665432 23579999999988888888888899999999999988
Q ss_pred CHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHhc
Q 018042 237 DHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTI 316 (361)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (361)
.|++++..++...+++.+++..+.++..+++++.. ..... ..+++..+......+.++.+.+.+.+|.|.+.+..
T Consensus 233 -~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (491)
T 4gc0_A 233 -QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL 307 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc
Confidence 77777777766655443333333322222222111 11111 22345566667777888888899999999999888
Q ss_pred CCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042 317 GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT 359 (361)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~ 359 (361)
+.+............+..+++.+++++ +.||+|||+.++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~dr~Grr~~~~~~ 348 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIM--TVDKFGRKPLQIIG 348 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCSHHHHHHH
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHH--HHHhhcCcchhccc
Confidence 888888888888888888999999998 69999999876543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=9.8e-31 Score=238.61 Aligned_cols=275 Identities=11% Similarity=0.091 Sum_probs=211.3
Q ss_pred HHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 018042 28 SCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR 107 (361)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 107 (361)
...++++..+..+++....++. .|.+++++|++..+.+++.+.+.++..++.++.|+++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d 86 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDIL--------------------LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK 86 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH--------------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344445556677766655444 45567788999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHH
Q 018042 108 AFGRKPSVLMGGAAFLAGSALG---GAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGA 184 (361)
Q Consensus 108 ~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~ 184 (361)
|+|||++++.+.++.+++.++. +++++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.
T Consensus 87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 8889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc-ccCCC----------------------cchHHHHHhhHHHHHHHHHhccc--ccCChhHHHhhCCCHH
Q 018042 185 LAANFINYGTE-QIKGG----------------------WGWRVSLALAAVPASILTLGALF--LPETPNSLIQRKSDHQ 239 (361)
Q Consensus 185 ~~~~~~~~~~~-~~~~~----------------------~~wr~~~~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~ 239 (361)
++++.++..+. ...+. .+||+.|++.+++.++..+..++ .||+++.. ++ +
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~-~- 241 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS-D- 241 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC-C-
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc-c-
Confidence 99999988776 43321 01999998777666655544433 46654210 00 0
Q ss_pred HHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHH-HHhc-C
Q 018042 240 KAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLL-FRTI-G 317 (361)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g 317 (361)
+++++.+.++++.++++..+.. .+..+...........+.|.+ +++. |
T Consensus 242 --------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g 291 (438)
T 3o7q_A 242 --------------------------AKQGSFSASLSRLARIRHWRWA----VLAQFCYVGAQTACWSYLIRYAVEEIPG 291 (438)
T ss_dssp --------------------------SSTTSHHHHHHHHTTCSHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred --------------------------ccccchhhhHHHHHhChHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 0011112244555555433322 233333334456677888988 8776 9
Q ss_pred CCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042 318 LGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT 359 (361)
Q Consensus 318 ~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~ 359 (361)
.+..+++.......++.+++.++.++ ++||+|||+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~r~~~~~~~~~~ 331 (438)
T 3o7q_A 292 MTAGFAANYLTGTMVCFFIGRFTGTW--LISRFAPHKVLAAY 331 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHH
Confidence 99999999999999999999999999 69999999876543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=6.4e-31 Score=240.69 Aligned_cols=292 Identities=14% Similarity=0.057 Sum_probs=221.1
Q ss_pred hHHHHHHHHHHHHhhhhccccccccccccCChHHHHhhchhhhhcccccccccccccCCchhHHHHHHHHHHHHHHHHHh
Q 018042 22 TAFVILSCMMAGMGGVIFGYDIGISGGVTSMEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFV 101 (361)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (361)
++.++......+++.+..+++....++. .|.+.+++ .+..+.+++.+++.++..+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~ 81 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALA--------------------MPYLVEQG-FSRGDLGFALSGISIAYGFSKFI 81 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHH--------------------HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777777777777665554 55667888 89999999999999999999999
Q ss_pred hHHHHHhhchhHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhcCCcccccchhhHHH
Q 018042 102 ASSVTRAFGRKPSVLMGGAAFLAGSALGGA----AVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQ 177 (361)
Q Consensus 102 ~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~ 177 (361)
.|+++||+|||++++++.++.+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+
T Consensus 82 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 161 (451)
T 1pw4_A 82 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 161 (451)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcc-hHHHHHhhHHHHHHHHHhc-ccccCChhHHHhhCCCHHHHHHHHHHhhCCcchH
Q 018042 178 FSIGIGALAANFINYGTEQIKGGWG-WRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVE 255 (361)
Q Consensus 178 ~~~~~g~~~~~~~~~~~~~~~~~~~-wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (361)
.+..+|.++++.++..+... .+ ||+.|++.+++.++..+.. +++||+|+....++. +++ +++.+
T Consensus 162 ~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~ 227 (451)
T 1pw4_A 162 CAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEY----------KNDYP 227 (451)
T ss_dssp HHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTT----------CCC--
T ss_pred HHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hhh----------ccccc
Confidence 99999999999998765533 36 9999999888777665554 558888764321111 000 00000
Q ss_pred HHHHHHHHHHhhhhhcccc--hhhhcccCchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHhhhhhh
Q 018042 256 AEFDDLLKASSTAKTINHP--FKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIEC 332 (361)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~ 332 (361)
++. +++ ++++...++ .++.+++ +.++...+..+........+..+.|.++++ .|++..+.+.......+
T Consensus 228 ~~~---~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 228 DDY---NEK-AEQELTAKQIFMQYVLPN----KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299 (451)
T ss_dssp ---------------CCTHHHHHHTSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred ccc---hhh-hhcccccccchHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 000 000 000111111 2333333 444444444555555667788899999977 69999999999999999
Q ss_pred cccccccchhhHHHHhhh--ccceeecc
Q 018042 333 GGSIGFGRNMWVKWMNRV--RWRKLDIY 358 (361)
Q Consensus 333 ~~~~g~~~~~~~~l~dr~--grr~~~~~ 358 (361)
+.+++.++.++ +.||+ +||+.+..
T Consensus 300 ~~~~~~~~~g~--l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 300 AGIPGTLLCGW--MSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHH--HHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHhcCCchhHHH
Confidence 99999999999 69999 98877543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=8.8e-27 Score=208.17 Aligned_cols=241 Identities=15% Similarity=0.189 Sum_probs=195.9
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 018042 70 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV 149 (361)
Q Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 149 (361)
.|.+.+++|.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45557888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042 150 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP 228 (361)
Q Consensus 150 ~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~ 228 (361)
+...+....++.|++|+++|++++++.+.+..+|..+++.++..+.+ +.+||+.|++.++..++..+.. +++||++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT---MWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 99999999999999999999999999999999999999999877664 3489999998888877766644 5588876
Q ss_pred hHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhHHc
Q 018042 229 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY 308 (361)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (361)
+.. ++ +++.++++++.+++ +.++...+..+...........+
T Consensus 180 ~~~---~~-------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T 2gfp_A 180 PVD---AP-------------------------------RTRLLTSYKTLFGN----SGFNCYLLMLIGGLAGIAAFEAC 221 (375)
T ss_dssp TTT---CC-------------------------------CCCTTTCSTHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---cc-------------------------------cccHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHHHH
Confidence 421 00 01112334445444 22333333344444455667778
Q ss_pred HHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccc
Q 018042 309 APLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR 353 (361)
Q Consensus 309 ~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr 353 (361)
.|.++++ .|.+..+.+.......++.+++.++.++ +.||.+++
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~--l~~r~~~~ 265 (375)
T 2gfp_A 222 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR--PNKRFSTL 265 (375)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT--TTTHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 8888765 6889899999999999999999999998 59998873
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.90 E-value=5.4e-23 Score=190.22 Aligned_cols=275 Identities=15% Similarity=0.113 Sum_probs=181.4
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHh-hchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhh
Q 018042 74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA 152 (361)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~ 152 (361)
++|+|++..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.+++++++|++.++++|++.|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 56689999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCccc--ccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc-cCChh
Q 018042 153 NQSVPLYLSEMAPARY--RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL-PETPN 229 (361)
Q Consensus 153 ~~~~~~~~~e~~~~~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-~es~~ 229 (361)
.+...++++|++|+++ |+.+.++++.+..+|..++|.+++.+.+. .+||+.|++.++..++..+..++. |+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999998 77788889999999999999998877653 479999999877666555444332 22110
Q ss_pred H---HHhhCCCHHHHHHHHHH----------------hhCCcchHHHHHH---HH--HH----Hhhhhhcccchhhhccc
Q 018042 230 S---LIQRKSDHQKAKLMLQR----------------VRGTNDVEAEFDD---LL--KA----SSTAKTINHPFKKIIQR 281 (361)
Q Consensus 230 ~---~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---~~--~~----~~~~~~~~~~~~~~~~~ 281 (361)
. ..+++.++++.++..+. ..+..+.++.... .. .. ....++.+....+ ++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 280 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTE--HL 280 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHH--HH
Confidence 0 00111112333222221 1111111100000 00 00 0000000000000 11
Q ss_pred CchhHHHHHHHHHHHHHhcchhhhHHcHHHHHHh-cCCCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeec
Q 018042 282 KYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI 357 (361)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~ 357 (361)
+. .......+..+...........+.|.+.++ .+.+....+.......++.+++..+.++ +.||++||+...
T Consensus 281 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~r~~~r~~~~ 353 (491)
T 4aps_A 281 RV--VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAW--LWTAWKKNQPSS 353 (491)
T ss_dssp -C--TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHH--HHHHTTTC---C
T ss_pred HH--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHH--HHHHHhccCCCc
Confidence 11 111112222222222334455667777765 4777677788888888888888888898 699999986543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.81 E-value=5.1e-19 Score=164.89 Aligned_cols=141 Identities=15% Similarity=0.197 Sum_probs=126.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHhh-chhHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHhhhhhhhhHH
Q 018042 79 FDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAV-NVYMLIFGRLLLGVGVGFANQSV 156 (361)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~ 156 (361)
++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHhcCCcccccchhhH---HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcc
Q 018042 157 PLYLSEMAPARYRGAINNG---FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL 222 (361)
Q Consensus 157 ~~~~~e~~~~~~R~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~ 222 (361)
.+++.|++|+++|+++.+. ...+..+|.++++.+++.+... .+||+.|++.++..++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 8889999999999987766543 4799999988877666555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.76 E-value=5.9e-20 Score=166.26 Aligned_cols=250 Identities=10% Similarity=-0.012 Sum_probs=147.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHH---HHhhhhhhHH-HHHHHHHHHHhhh
Q 018042 74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGS---ALGGAAVNVY-MLIFGRLLLGVGV 149 (361)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~~~~~r~l~G~~~ 149 (361)
++++|++..+.+++.+.+.++..++++++|+++||+|||++++++..+..++. ....+++... .++..+++.|++.
T Consensus 35 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (417)
T 2cfq_A 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114 (417)
T ss_dssp HTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSST
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999998887765532 2122332221 2334555655554
Q ss_pred hhhhhHHHHHHHhcCCc--ccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccccc-C
Q 018042 150 GFANQSVPLYLSEMAPA--RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP-E 226 (361)
Q Consensus 150 ~~~~~~~~~~~~e~~~~--~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~-e 226 (361)
+...+.....+.++.++ ++|+...+....+..+|..++|.++..+.. .+||+.|++.++..++..+..++.+ |
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~ 190 (417)
T 2cfq_A 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred HHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCcc
Confidence 44443333334444332 355666777766777888888888776653 2699999887776555555555544 4
Q ss_pred ChhHHHhhCCCHHHHHHHHHHhhCCcchHHHHHHHHHHHhhhhhcccchhhhcccCchhHHHHHHHHHHHHHhcchhhhH
Q 018042 227 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIA 306 (361)
Q Consensus 227 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (361)
+++. .+ +++.+ ++ ++++...+++++.++++..+. ..+..+.....+....
T Consensus 191 ~~~~----~~-~~~~~-------~~--------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 191 APSS----AT-VANAV-------GA--------------NHSAFSLKLALELFRQPKLWF----LSLYVIGVSCTYDVFD 240 (417)
T ss_dssp CSCS----SC-SSSSS-------SS--------------CCCCCCHHHHHHHTTCHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cccc----cc-ccccc-------cc--------------ccccccHHHHHHHhcCCchhh----HHHHHHHHHHHHHHHH
Confidence 4210 00 00000 00 000000112334444322221 2222222222233444
Q ss_pred HcHHHHHHhc-C---CCChhhHHHhhhhhhcccccccchhhHHHHhhhccceeeccc
Q 018042 307 FYAPLLFRTI-G---LGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT 359 (361)
Q Consensus 307 ~~~~~~~~~~-g---~s~~~~~~~~~~~~~~~~~g~~~~~~~~l~dr~grr~~~~~~ 359 (361)
.+.|.++.+. + .+....+.......++.+++.++.++ ++||+|||+++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~l~~~ 295 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL--IINRIGGKNALLLA 295 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcHHHHHHHH
Confidence 5577776543 2 22334456666667778888899999 69999999876543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.38 E-value=8.6e-12 Score=113.56 Aligned_cols=148 Identities=12% Similarity=0.055 Sum_probs=125.8
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhh--chhHHHHHHHHHHH-HHHHHhhhh--hhHHHHHHHHHHHHhh
Q 018042 74 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GRKPSVLMGGAAFL-AGSALGGAA--VNVYMLIFGRLLLGVG 148 (361)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~r~l~G~~ 148 (361)
++.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+.+..++.|++
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 359 (451)
T 1pw4_A 280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 359 (451)
T ss_dssp TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 344788999999999999999999999999999999 99999988877766 677776665 3677788888999999
Q ss_pred hhhhhhHHHHHHHhcCCcccccchhhHHHHHHHH-HHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042 149 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL 224 (361)
Q Consensus 149 ~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 224 (361)
.+...+....++.|.+|+++|+++.++.+....+ |..+++.+.+.+.+. .+|+..|++.++..++..+..++.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999 999999997776654 479999988887777666655444
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=6e-12 Score=113.64 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=119.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018042 80 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLY 159 (361)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 159 (361)
+....+...+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888999999999999999999999988888888888888888888888888888877777778899
Q ss_pred HHhcCCcccccchhhH-HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhc-ccccCCh
Q 018042 160 LSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP 228 (361)
Q Consensus 160 ~~e~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~ 228 (361)
++|.+|++.|+.+.+. ++....+|..++|.+++.+.+ +.+++..|.+.+++.++..+.. .+.||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH---HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999998888 477888999999999776654 2368888888777777666554 4466654
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.30 E-value=1.5e-11 Score=113.38 Aligned_cols=152 Identities=17% Similarity=0.087 Sum_probs=103.5
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHhhhhh
Q 018042 77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLLGVGVGF 151 (361)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~ 151 (361)
.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...++..-+..+.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 34556666667777788889999999999999999999999888888777665442 1222222222222222223
Q ss_pred hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhccc---CCCcchHHHHHhhHHHHHHHHHhc-ccccCC
Q 018042 152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI---KGGWGWRVSLALAAVPASILTLGA-LFLPET 227 (361)
Q Consensus 152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es 227 (361)
..+....+.+|.+|.+.|++++++......+|..+++.+...+... ....++.+.|++.++++++..+.. +++|||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 3456778999999999999999999988888888777664333221 111245566777777777666655 569998
Q ss_pred h
Q 018042 228 P 228 (361)
Q Consensus 228 ~ 228 (361)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 4
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.21 E-value=1.1e-10 Score=105.69 Aligned_cols=145 Identities=10% Similarity=-0.044 Sum_probs=116.0
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 018042 75 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ 154 (361)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~ 154 (361)
+.+|.+..+.+...+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.++.. ++.|++.+...+
T Consensus 288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 366 (438)
T 3o7q_A 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYP 366 (438)
T ss_dssp HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999888888887665544 888999999999
Q ss_pred HHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhcccc
Q 018042 155 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL 224 (361)
Q Consensus 155 ~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 224 (361)
....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+ +++..|++.++..++..+..++.
T Consensus 367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999966 888877766 455888999998777665432 27777777655544444433333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.21 E-value=7.6e-11 Score=108.61 Aligned_cols=145 Identities=10% Similarity=-0.027 Sum_probs=110.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHH-----HHHHHHHHHHHHhhhhh---------hHHHHHHHHH
Q 018042 78 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVL-----MGGAAFLAGSALGGAAV---------NVYMLIFGRL 143 (361)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~r~ 143 (361)
+.+....+...+...++..++.++.+++.||+|||+... .+.++.+++.++..... +.+.+++.-+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 334355677777888888999999999999999986654 67777777776666543 6677888889
Q ss_pred HHHhhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhhHHHHHHHHHhccc
Q 018042 144 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF 223 (361)
Q Consensus 144 l~G~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~ 223 (361)
+.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+...+.+. ++.+.|.+.++..++..+..++
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998999999999999999999999999999999999999997666542 5666777766666665555443
Q ss_pred -ccC
Q 018042 224 -LPE 226 (361)
Q Consensus 224 -~~e 226 (361)
.++
T Consensus 471 ~~~~ 474 (491)
T 4aps_A 471 LSKR 474 (491)
T ss_dssp C---
T ss_pred HHHH
Confidence 444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.75 E-value=2.3e-09 Score=95.03 Aligned_cols=128 Identities=16% Similarity=0.068 Sum_probs=97.4
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHHhhchhHHHHHHHHH-HHHHHH--Hhhh--hhhHHHHHHHHHHHHhhhhh
Q 018042 77 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAA-FLAGSA--LGGA--AVNVYMLIFGRLLLGVGVGF 151 (361)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~r~l~G~~~~~ 151 (361)
+|.+..+.+.+.+...++..++.++.+++.||+|++. ..+... ...+.. .... .++.+.+++..++.|++.+.
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 307 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM 307 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999999998832 233322 222222 1122 24677777888999999999
Q ss_pred hhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHhh
Q 018042 152 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALA 210 (361)
Q Consensus 152 ~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~ 210 (361)
..+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+ +.+|+..+.+.
T Consensus 308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~~~~~~~~~~ 362 (375)
T 2gfp_A 308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ---TGQGSLGLLMT 362 (375)
T ss_dssp TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH---HHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccHHHHHH
Confidence 99999999999998 899999999999999999888887655542 23566666553
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.64 E-value=4.9e-08 Score=90.55 Aligned_cols=139 Identities=14% Similarity=0.051 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH----Hhhch----hHHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHH
Q 018042 84 LTSFTSSLYVAGLVASFVASSVT----RAFGR----KPSVLMGGAAFLAGSALGGAA---------VNVYMLIFGRLLLG 146 (361)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~l~----d~~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G 146 (361)
.+.+.+...++..++.++.+.+. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 45556666667777777777664 55543 356677888888887777664 36777888899999
Q ss_pred hhhhhhhhHHHHHHHhcCCcccccchhhHHHHHHHHHHHHHHHHHhhhcccCCCcch---------HHHHHhhHHHHHHH
Q 018042 147 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGW---------RVSLALAAVPASIL 217 (361)
Q Consensus 147 ~~~~~~~~~~~~~~~e~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w---------r~~~~~~~~~~~~~ 217 (361)
++.+...+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+... .+| +..|++.+.+.++.
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999776654210 123 33366666655555
Q ss_pred HHhccc
Q 018042 218 TLGALF 223 (361)
Q Consensus 218 ~~~~~~ 223 (361)
.+..++
T Consensus 496 ~~~~~~ 501 (524)
T 2xut_A 496 AIVFAL 501 (524)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 554443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=63.35 E-value=4.9 Score=18.52 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.3
Q ss_pred hhHHHHHhhchhHH
Q 018042 101 VASSVTRAFGRKPS 114 (361)
Q Consensus 101 ~~g~l~d~~Grr~~ 114 (361)
++|.+..++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788999999865
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=33.18 E-value=1.1e+02 Score=23.67 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhHHHHHhhchh
Q 018042 89 SSLYVAGLVASFVASSVTRAFGRK 112 (361)
Q Consensus 89 ~~~~~~~~~~~~~~g~l~d~~Grr 112 (361)
.-|.+|..++..+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 445667777778888888876543
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=24.41 E-value=64 Score=16.48 Aligned_cols=9 Identities=44% Similarity=0.921 Sum_probs=6.1
Q ss_pred cccccCChh
Q 018042 221 ALFLPETPN 229 (361)
Q Consensus 221 ~~~~~es~~ 229 (361)
..+++|+|+
T Consensus 20 AI~FRePPr 28 (32)
T 3arc_T 20 AIFFREPPR 28 (32)
T ss_dssp HHHTSCCCC
T ss_pred hhhhcCCCC
Confidence 355788875
Done!