BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018045
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GOY|A Chain A, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|B Chain B, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|C Chain C, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|D Chain D, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|E Chain E, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|F Chain F, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|G Chain G, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|H Chain H, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
Length = 275
Score = 284 bits (727), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 126/221 (57%), Positives = 168/221 (76%), Gaps = 3/221 (1%)
Query: 1 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
+ A E FG+++ I+FSGAEDV L++ A R +VFSLDTGRL+PETYRF D+V +H+
Sbjct: 46 LKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHY 105
Query: 61 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
GI I+ + PD ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+D
Sbjct: 106 GIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRD 165
Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
QSPGTRS++ V+++D F E L K+NP++++ ++W ++R +++P NSLH +G
Sbjct: 166 QSPGTRSQVAVLEIDGAFSTPE---KPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERG 222
Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 221
YISIGCEPCTRPVLP QHEREGRWWWE+A KECGLH GN+
Sbjct: 223 YISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL 263
>pdb|2OQ2|A Chain A, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|B Chain B, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|C Chain C, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|D Chain D, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
Length = 261
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 19/188 (10%)
Query: 40 LDTGRLNPETYRFFDEVEKHF----GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECC 95
+DT P+T +E+EK + I PD E +A SK +E +
Sbjct: 76 IDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYD 135
Query: 96 RVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 153
+ KV P RA K L A TG+RK Q RS++ ++++D + ++K NP
Sbjct: 136 YLAKVEPAHRAYKELHISAVFTGRRKSQGSA-RSQLSIIEIDEL--------NGILKINP 186
Query: 154 VANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK- 212
+ N + ++ +VP N L GY SIG T+PV G+ ER GRW KAK
Sbjct: 187 LINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRW---KGKAKT 243
Query: 213 ECGLHKGN 220
ECG+H+ +
Sbjct: 244 ECGIHEAS 251
>pdb|2O8V|A Chain A, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 252
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 13/169 (7%)
Query: 37 VFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCR 96
V DTG L PETYRF DE+ + ++ R L+ +G ++
Sbjct: 74 VILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYND 133
Query: 97 VRKVRPLRRALKGLRA--WITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 154
+ KV P+ RALK L A W G R++QS G+R+ +PV+ ++ GV ++ P+
Sbjct: 134 INKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVL-------AIQRGVFKVL---PI 182
Query: 155 ANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGR 203
+ I+ +L+ + + L +GY+S+G TR PG E E R
Sbjct: 183 IDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETR 231
>pdb|1SUR|A Chain A, Phospho-Adenylyl-Sulfate Reductase
Length = 215
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 37 VFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCR 96
V DTG L PETYRF DE+ + ++ R L+ +G ++
Sbjct: 73 VILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYND 132
Query: 97 VRKVRPLRRALKGLRA--WITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 154
+ KV P+ RALK L A W G R++QS G+R+ +PV+ ++ GV ++ P+
Sbjct: 133 INKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVL-------AIQRGVFKVL---PI 181
Query: 155 ANVKGNDIWNFLRTMDVPINSLHSQGYISIG 185
+ I+ +L+ + + L +GY+S+G
Sbjct: 182 IDWDNRTIYQYLQKHGLKYHPLWDEGYLSVG 212
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
L+ YAPWC C+ +E Y L K G V + D + + ++ FPTI F
Sbjct: 29 LIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLV-IAKMDATANDITNDQYKVEGFPTIYF 87
Query: 333 FPKHSSK-PIKYPSERRDVDSLMAFVD 358
P K PIK+ RD++ L F+D
Sbjct: 88 APSGDKKNPIKFEGGNRDLEHLSKFID 114
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
WLV YAPWC CQ + + + A L + VKVG AD Q + +Q FPTI
Sbjct: 38 WLVEFYAPWCGHCQRLTPEWKKAATALK-DVVKVGAVNADKHQSLGGQYGVQ--GFPTIK 94
Query: 332 FFPKHSSKPIKYPSERRDVDSLMAFVDALR 361
F + +KP Y R + A + ALR
Sbjct: 95 IFGANKNKPEDYQGGRTGEAIVDAALSALR 124
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 244 DIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGV 303
+IF +Q+ G + ++ ++ LV+ YAPWC C+ + +Y ELAD A
Sbjct: 351 EIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATS 410
Query: 304 KVGKFRADGDQKEYAKQKLQLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFV 357
V A D E + + + +PTI+ +P S+ + Y R +DSL F+
Sbjct: 411 DV--LIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRS-LDSLFDFI 462
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
L +APWC C+ M YV+ A+ L + + + +Q + + FP++
Sbjct: 35 LAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIP--GFPSLKI 92
Query: 333 F 333
F
Sbjct: 93 F 93
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV YAPWC C+A+ Y + A KL G ++ + D ++ Q+ + +PTI F
Sbjct: 28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKF 87
Query: 333 FPKHSSKPIKYPSERRDVDSLM 354
F + K + R+ D ++
Sbjct: 88 FRNGDTASPKEYTAGREADDIV 109
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 265 LDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQ 323
+++ + L+ YAPWC C+ +E Y EL +KL+ + + + K A + +
Sbjct: 366 VNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND---VPSPYE 422
Query: 324 LGSFPTILFFPKHSS-KPIKYPSERRDVD 351
+ FPTI F P + P KY R D
Sbjct: 423 VRGFPTIYFSPANKKLNPKKYEGGRELSD 451
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 265 LDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQ 323
+++ + L+ YAPWC C+ +E Y EL +KL+ + + + K A + +
Sbjct: 41 VNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND---VPSPYE 97
Query: 324 LGSFPTILFFPKHSS-KPIKY 343
+ FPTI F P + P KY
Sbjct: 98 VRGFPTIYFSPANKKLNPKKY 118
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADK----LAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
+ YAPWC C+ + ++ EL+ K LA GVK+ + ++ +K ++ +P
Sbjct: 27 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLA--GVKIAEVDCTAERNICSKYSVR--GYP 82
Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFV 357
T+L F K + S RD+DSL FV
Sbjct: 83 TLLLF--RGGKKVSEHSGGRDLDSLHRFV 109
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADK----LAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
+ YAPWC C+ + ++ EL+ K LA GVK+ + ++ +K ++ +P
Sbjct: 25 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLA--GVKIAEVDCTAERNICSKYSVR--GYP 80
Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFV 357
T+L F K + S RD+DSL FV
Sbjct: 81 TLLLF--RGGKKVSEHSGGRDLDSLHRFV 107
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 240 EAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA 299
E + D+ N ++V+L + L + E W+V Y+PW Q + + +A L
Sbjct: 535 EFIEDLRNP-SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT 593
Query: 300 GNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE---RRDVDSLMAF 356
G + VG G + Q+ + +P I F+P+ SSK +Y S RD SL ++
Sbjct: 594 G-LINVGSVDC-GQYHSFCTQE-NVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSW 650
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
+EPWLV +APW +A+ + + L G +KVG D E + ++P
Sbjct: 455 KEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ-LKVGTL--DCTIHEGLCNMYNIQAYP 511
Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 361
T + F + S I + ++ F++ LR
Sbjct: 512 TTVVFNQSS---IHEYEGHHSAEQILEFIEDLR 541
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADK----LAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
+ YAPWC C+ + ++ EL+ K LA GVK+ + ++ +K ++ +P
Sbjct: 20 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLA--GVKIAEVDCTAERNICSKYSVR--GYP 75
Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFV 357
T+L F K + S RD+DSL FV
Sbjct: 76 TLLLF--RGGKKVSEHSGGRDLDSLHRFV 102
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV YAPWC C+ + ++ + A +L G V+V D ++ + K + FPT++
Sbjct: 39 LVEFYAPWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCDLNKNKALCAKYDVNGFPTLMV 97
Query: 333 F--PKHS-SKPI 341
F PK SKPI
Sbjct: 98 FRPPKIDLSKPI 109
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 250 NLVTLNRTGMEN--LARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 307
L+T G++ LAR + P LV +APWC C+ M + A LAG V++ K
Sbjct: 43 GLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAK 101
Query: 308 FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
+ ++Q P + F H + + + R L+ FV
Sbjct: 102 IDTQAHPAVAGRHRIQ--GIPAFILF--HKGRELARAAGARPASELVGFV 147
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 246 FNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVK- 304
S+ VT+ N LD ++ L+ YAPWC C+A+ Y EL A + K
Sbjct: 3 LGSEGPVTVVVAKNYNEIVLDDTKD-VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 305 -VGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS-SKPIKYPSERRDVDSLMAFV 357
V + D + ++ FPTI +P + +P+ Y S R V+ L+ F+
Sbjct: 62 RVVIAKVDATANDVPD---EIQGFPTIKLYPAGAKGQPVTY-SGSRTVEDLIKFI 112
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG---NGVKVGKFRA 310
+ EN+ + + + LV YA WC+F Q + + E +D + N +V R
Sbjct: 7 ITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARV 66
Query: 311 DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 361
D DQ Q+ ++ +PT+ F +Y +R S+ A D +R
Sbjct: 67 DCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQR----SVKALADYIR 113
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 311
VTL+ T +N + + + LV YAPWC C+ + Y + A +L+ + + D
Sbjct: 8 VTLSLT-KDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 66
Query: 312 GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 347
++ ++ + +PT+ F K +P Y R
Sbjct: 67 ATEQTDLAKRFDVSGYPTLKIFRK--GRPFDYNGPR 100
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-DGDQKEYAKQKLQLGSF 327
++ W+V YAPWC C+ +E + A ++ K A D + + + F
Sbjct: 25 EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF 84
Query: 328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
PTI F K S P+ Y R D + +D
Sbjct: 85 PTIKIFQKGES-PVDYDGGRTRSDIVSRALD 114
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
P +V +APWC C+ + ELA + +G K+ ++ + D+ + + S PT+
Sbjct: 19 PVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNIRSIPTV 75
Query: 331 LFFPKHSSK 339
LFF K
Sbjct: 76 LFFKNGERK 84
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
P +V +APWC C+ + ELA + +G K+ ++ + D+ + + S PT+
Sbjct: 20 PVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNIRSIPTV 76
Query: 331 LFFPKHSSK 339
LFF K
Sbjct: 77 LFFKNGERK 85
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 25/63 (39%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
L+ YAPWC C+ Y ++A L N + + D K + +PTI
Sbjct: 38 LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKI 97
Query: 333 FPK 335
K
Sbjct: 98 LKK 100
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
V YAPWC C+ + + +L + + + + K + ++ E K + SFPT+
Sbjct: 271 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVK----VHSFPTLK 326
Query: 332 FFPKHSSKPIKYPSERRDVDSLMAFVDA 359
FFP + + + + R +D F+++
Sbjct: 327 FFPASADRTVIDYNGERTLDGFKKFLES 354
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
++ +A WC C+ + + +++D AG+ KVG ++ D D++ Q++ + + PT +F
Sbjct: 37 VIDFWATWCGPCKMIGPVFEKISDTPAGD--KVGFYKVDVDEQSQIAQEVGIRAMPTFVF 94
Query: 333 F 333
F
Sbjct: 95 F 95
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 311
VTL T EN + + + LV YAPWC C+ + Y + A +L+ + + D
Sbjct: 131 VTLVLT-KENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 189
Query: 312 GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLM 354
+ ++ + +PT+ F K P E+ + M
Sbjct: 190 ATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYM 232
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 239 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 298
SE ++ ++ LN +N ++ L+ YAPWC C+ Y ++A+ L
Sbjct: 5 SEDDLEVKEENGVLVLNDANFDNFV---ADKDTVLLEFYAPWCGHCKQFAPEYEKIANIL 61
Query: 299 AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 335
+ + D + + +PTI K
Sbjct: 62 KDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKK 98
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
V YAPWC C+ + + +L + + + + K + ++ E K + SFPT+
Sbjct: 29 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVK----VHSFPTLK 84
Query: 332 FFPKHSSKPIKYPSERRDVDSLMAFVD 358
FFP + + + + R +D F++
Sbjct: 85 FFPASADRTVIDYNGERTLDGFKKFLE 111
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
E W V Y+P C C + ++ E A ++ G +++G GD + + K + S+P+
Sbjct: 115 ELWFVNFYSPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNC-GDDRMLCRMK-GVNSYPS 171
Query: 330 ILFFPKHSSKPIKYPSERRDVDSLMAFV 357
+ F + +KY +R +SL+AF
Sbjct: 172 LFIF-RSGMAAVKYNGDRSK-ESLVAFA 197
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 35.8 bits (81), Expect = 0.037, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 264 RLDHRQ--EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK 321
+L+ RQ +P +++ WCQ C+ M+ ++ E+A ++ G+ ++ A+ +K A +
Sbjct: 10 QLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGD-IRFAYMDAEDAEKTMA--E 66
Query: 322 LQLGSFPTILFF 333
L + + P++ F
Sbjct: 67 LNIRTLPSLALF 78
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 260 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 319
E L +L P ++ +APWC C++ + E A + AG KV + + + +
Sbjct: 46 ETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAG---KVRFVKVNTEAEPALS 102
Query: 320 QKLQLGSFPTILFF 333
+ ++ S PTI +
Sbjct: 103 TRFRIRSIPTIXLY 116
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
W++ YAPWC CQ ++ + A+ G ++V + D ++ + + + PTI
Sbjct: 25 WMIEFYAPWCPACQNLQPEWESFAE--WGEDLEVNIAKVDVTEQPGLSGRFIINALPTIY 82
Query: 332 FFPKHSSKPIKYPSERRDVDSLMA 355
+ + P ++D + ++
Sbjct: 83 HCKDGEFRRYQGPRTKKDFINFIS 106
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 35.0 bits (79), Expect = 0.073, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 260 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 319
EN + + LV +A WC C E Y ++A+K G V G+ D +QK
Sbjct: 12 ENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAV-FGRLNVDENQK--IA 68
Query: 320 QKLQLGSFPTILFF 333
K + + PT L F
Sbjct: 69 DKYSVLNIPTTLIF 82
>pdb|1ZUN|A Chain A, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 325
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 26/183 (14%)
Query: 13 AIAFSGAEDVALIEYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPD 70
+I A + L A G+ PF V +DT E YRF D+ + G+ I ++ PD
Sbjct: 54 SIGKDSAVXLHLARKAFFPGKLPFPVXHVDTRWKFQEXYRFRDQXVEEXGLDLITHINPD 113
Query: 71 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSPGTRSE 128
V ++G+ F G + + K L++AL G A G R+D+ E
Sbjct: 114 GV-------AQGINPFTH-GSAKHTDIXKTEGLKQALDKHGFDAAFGGARRDEEKSRAKE 165
Query: 129 ------------IPVVQVDPVFEGLEGGV--GSLVKWNPVANVKGNDIWNFLRTMDVPIN 174
P Q ++ G V G ++ P++N DIW ++ +PI
Sbjct: 166 RVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIV 225
Query: 175 SLH 177
L+
Sbjct: 226 PLY 228
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 34.7 bits (78), Expect = 0.092, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
P +V +APWC + + ELA + +G K+ ++ + D+ + + S PT+
Sbjct: 20 PVMVDFWAPWCGPSKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNIRSIPTV 76
Query: 331 LFFPKHSSK 339
LFF K
Sbjct: 77 LFFKNGERK 85
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
W+V YAPWC CQ + LA + G V+ GK D QK + ++P++
Sbjct: 24 WVVDFYAPWCGPCQNFAPEFELLARMIKGK-VRAGK--VDCQAYPQTCQKAGIKAYPSVK 80
Query: 332 FFPKHSSKPIKYPSE--RRDVDSLMAFV 357
+ +K + + RD ++ A +
Sbjct: 81 LYQYERAKKSIWEEQINSRDAKTIAALI 108
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
LVVL +A WC C+ + VEL+ + A N V + + D D+ E + + S PT
Sbjct: 27 LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVL---KVDVDECEDIAMEYNISSMPTF 83
Query: 331 LFF 333
+F
Sbjct: 84 VFL 86
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
LVVL +A WC C+ + VEL+ + A N V + + D D+ E + + S PT
Sbjct: 22 LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVL---KVDVDECEDIAMEYNISSMPTF 78
Query: 331 LFF 333
+F
Sbjct: 79 VFL 81
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 273 LVVLY--APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
++VLY A WCQ C M+ + ++ K G + + + D D+ E +K + S PTI
Sbjct: 44 VIVLYFFAKWCQAC-TMQSTEMDKLQKYYGKRIYL--LKVDLDKNESLARKFSVKSLPTI 100
Query: 331 LFF 333
+
Sbjct: 101 ILL 103
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 260 ENLARLDHRQEPWLVV-LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA 318
E L RL + + LVV +APW C M ELA +L V K A+G +
Sbjct: 24 EELLRL--KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPE--V 77
Query: 319 KQKLQLGSFPTILFFPKHSSK 339
+K ++ S PT LFF K+S K
Sbjct: 78 SEKYEISSVPTFLFF-KNSQK 97
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
+P +V YA WC C+ + EL+ + AG K+ ++ + D++ + + S PT
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQSIPT 108
Query: 330 ILFFP 334
I F P
Sbjct: 109 IWFVP 113
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 260 ENLARLDHRQEPWLVV-LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA 318
E L RL + LVV +APW C M ELA +L V K A+G +
Sbjct: 30 EELLRLKAKS--LLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPE--V 83
Query: 319 KQKLQLGSFPTILFFPKHSSK 339
+K ++ S PT LFF K+S K
Sbjct: 84 SEKYEISSVPTFLFF-KNSQK 103
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 245 IFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVK 304
+ +S+ T+ T + +P LV +A WC C+ + E+A + A + +
Sbjct: 6 MTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD-LT 64
Query: 305 VGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIK 342
V K D D + Q+ S PT++ F +P+K
Sbjct: 65 VAKL--DVDTNPETARNFQVVSIPTLILF--KDGQPVK 98
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 33.1 bits (74), Expect = 0.23, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 246 FNSQ-----NLVTLNRTG-MENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA 299
F SQ L+ L + G +E+L H+ + +V +A WC C+ + + EL++K
Sbjct: 5 FTSQLVIMSELIELKQDGDLESLLE-QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD 63
Query: 300 GNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
VKV D D+ E +K + + PT +
Sbjct: 64 AIFVKV-----DVDKLEETARKYNISAMPTFI 90
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 33.1 bits (74), Expect = 0.23, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 251 LVTLNRTG-MENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 309
L+ L + G +E+L H+ + +V +A WC C+ + + EL++K VKV
Sbjct: 6 LIELKQDGDLESLLE-QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKV---- 60
Query: 310 ADGDQKEYAKQKLQLGSFPTIL 331
D D+ E +K + + PT +
Sbjct: 61 -DVDKLEETARKYNISAMPTFI 81
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 261 NLARLDHRQEPWLVVLYAPWCQFCQAMEG---SYVELADKLAGNGVKVGKFRADGDQKEY 317
N A ++ + +P ++ LYA WC C+ E S ++ LA + A+ Q
Sbjct: 20 NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVA 79
Query: 318 AKQKLQLGSFPTILFF 333
+ L + PTILFF
Sbjct: 80 LLKHLNVLGLPTILFF 95
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 261 NLARLDHRQEPWLVVLYAPWCQFCQAMEG---SYVELADKLAGNGVKVGKFRADGDQKEY 317
N A ++ + +P ++ LYA WC C+ E S ++ LA + A+ Q
Sbjct: 23 NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVA 82
Query: 318 AKQKLQLGSFPTILFF 333
+ L + PTILFF
Sbjct: 83 LLKHLNVLGLPTILFF 98
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
+P +V YA WC C+ + ELA + G V ++ D ++++ + S P+
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIV---IYKVDTEKEQELAGAFGIRSIPS 95
Query: 330 ILFFP 334
ILF P
Sbjct: 96 ILFIP 100
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
+P +V YA WC C+ + EL+ + AG K+ ++ + D++ + + PT
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQGIPT 108
Query: 330 ILFFP 334
I F P
Sbjct: 109 IWFVP 113
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 266 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 325
D R + LV L+A WC C+ + EL KL+G +V D E K L+
Sbjct: 57 DFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEA 116
Query: 326 SFPTILFFPKHSSK 339
+ + +F +K
Sbjct: 117 NLTRLGYFNDQKAK 130
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 31.2 bits (69), Expect = 0.91, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
+P LV +A WC C+ + E+A + A + + V K D D + Q+ S PT
Sbjct: 26 KPVLVDFWATWCGPCKMVAPVLEEIATERATD-LTVAKL--DVDTNPETARNFQVVSIPT 82
Query: 330 ILFFPKHSSKPIK 342
++ F +P+K
Sbjct: 83 LILF--KDGQPVK 93
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 264 RLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ 323
+++ ++P +V Y+P C +C+A E + E A + + V G R + + +K
Sbjct: 19 QVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAV-FG--RINIATNPWTAEKYG 75
Query: 324 LGSFPTILFF 333
+ PT FF
Sbjct: 76 VQGTPTFKFF 85
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
+V +A WC C+ + + +K A ++ D D+ QK ++ S PT++F
Sbjct: 23 VVDFFATWCGPCKMI----APMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIF 78
Query: 333 F 333
+
Sbjct: 79 Y 79
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
+V +A WC C+ + + +K A ++ D D+ QK ++ S PT++F
Sbjct: 30 VVDFFATWCGPCKMI----APMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIF 85
Query: 333 F 333
+
Sbjct: 86 Y 86
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ 323
++P LV +A WC CQ M + LA + +KV K D + K K++
Sbjct: 25 EQPVLVYFWASWCGPCQLMS-PLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVE 78
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + S PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRSIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC +C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCVWCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + ELA G K + D D+ K ++ S PT++
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEG---KADILKLDVDENPSTAAKYEVMSIPTLIV 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +APWC C+ + ELA AG +KV K D A+ ++ S PT++
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGR-LKVVKVNVDEHPGLAARYGVR--SVPTLVL 110
Query: 333 F 333
F
Sbjct: 111 F 111
>pdb|3HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 328
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|1HGD|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
Length = 328
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|5HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|1HGF|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGI|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGJ|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1QFU|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1EO8|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1KEN|A Chain A, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|C Chain C, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|E Chain E, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|2YPG|A Chain A, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|C Chain C, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|E Chain E, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
Length = 328
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|2HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 328
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|3VUN|A Chain A, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|C Chain C, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|E Chain E, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group
Length = 329
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|3ZTJ|A Chain A, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|C Chain C, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|E Chain E, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin
Length = 329
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|3SDY|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
pdb|4FQY|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H3 Influenza Hemagglutinin
pdb|4FNK|A Chain A, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|C Chain C, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|E Chain E, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FQR|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|E Chain E, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|G Chain G, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|I Chain I, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|K Chain K, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|O Chain O, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|Q Chain Q, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|S Chain S, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|U Chain U, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|W Chain W, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 323
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 76 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 118
>pdb|2VIU|A Chain A, Influenza Virus Hemagglutinin
Length = 328
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
LVV+ YA WC C+ + EL+ ++ V + D D+ E Q Q+ PT
Sbjct: 22 LVVIDFYATWCGPCKMIAPKLEELSQSMS----DVVFLKVDVDECEDIAQDNQIACMPTF 77
Query: 331 LF 332
LF
Sbjct: 78 LF 79
>pdb|3EYM|A Chain A, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|C Chain C, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|E Chain E, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 321
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 74 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 116
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + ELA G K + D D+ K ++ S PT++
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEG---KADILKLDVDENPSTAAKYEVMSIPTLIV 79
Query: 333 F 333
F
Sbjct: 80 F 80
>pdb|4FP8|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|D Chain D, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
Length = 278
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 44 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 86
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +APWC C+ + Y A +L G V + D K + +PT+
Sbjct: 25 LVEFFAPWCGHCKRLAPEYEAAATRLKG---IVPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Query: 333 F 333
F
Sbjct: 82 F 82
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGHCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2VIS|C Chain C, Influenza Virus Hemagglutinin, (Escape) Mutant With Thr
131 Replaced By Ile, Complexed With A Neutralizing
Antibody
Length = 282
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 55 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 97
>pdb|2VIT|C Chain C, Influenza Virus Hemagglutinin, Mutant With Thr 155
Replaced By Ile, Complexed With A Neutralizing Antibody
Length = 282
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 55 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 97
>pdb|2VIR|C Chain C, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 282
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 55 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 97
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 307
++T E L R ++ W+V +A W CQ+ Y +L+ K G+ GK
Sbjct: 14 DKTIDEELER--DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGK 64
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPT 329
P LV +APWC C+ + + D++AG K+ + + D+ + + S PT
Sbjct: 21 PVLVDFWAPWCGPCRII----APVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPT 76
Query: 330 ILFF 333
I+ F
Sbjct: 77 IMVF 80
>pdb|4HCN|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Ubiquitin
pdb|4HCP|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Nedd8
Length = 255
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 138 FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPIN 174
++ L GG PVA + N+I+ + DVPI+
Sbjct: 66 YKELTGGADPFALMTPVAGLSANNIFKLMTEKDVPID 102
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKLIASILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
+P LV +APWC C+ + ELA + G KV + + D+ + + S PT
Sbjct: 20 KPVLVDFWAPWCGPCRMIAPIIEELAKEYEG---KVKVVKVNVDENPNTAAQYGIRSIPT 76
Query: 330 ILFF 333
+L F
Sbjct: 77 LLLF 80
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 48 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 90
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 74 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 116
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 307
S +V N T L R+ LV +A WC CQ + ++ +A V
Sbjct: 2 SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLG----QILPSIAEANKDVTF 57
Query: 308 FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIK 342
+ D D+ A + S P LFF K IK
Sbjct: 58 IKVDVDKNGNAADAYGVSSIPA-LFFVKKEGNEIK 91
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILEEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCEMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 80
Query: 333 F 333
F
Sbjct: 81 F 81
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 28.1 bits (61), Expect = 7.0, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 261 NLARLDHRQEPWLVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA 318
+L +L + + L+V+ +A WC C+ + LA ++ +V + D DQ E A
Sbjct: 9 DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP----EVEFAKVDVDQNEEA 64
Query: 319 KQKLQLGSFPTILF 332
K + + PT +F
Sbjct: 65 AAKYSVTAMPTFVF 78
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
LV +A WC C+ + E+AD+ G K+ + + DQ K + PT+L
Sbjct: 34 LVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTLLL 90
Query: 333 F 333
F
Sbjct: 91 F 91
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 269 QEPWLVV-LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 327
Q P ++V +A WC C+ + E+A + G K+ + D D+ + ++ S
Sbjct: 18 QHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG---KLLVAKLDVDENPKTAXRYRVXSI 74
Query: 328 PTILFF 333
PT++ F
Sbjct: 75 PTVILF 80
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 269 QEPWLVV-LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 327
Q P ++V +A WC C+ + E+A + G K+ + D D+ + ++ S
Sbjct: 17 QHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG---KLLVAKLDVDENPKTAXRYRVXSI 73
Query: 328 PTILFF 333
PT++ F
Sbjct: 74 PTVILF 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,738,833
Number of Sequences: 62578
Number of extensions: 446585
Number of successful extensions: 1079
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 107
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)