Query 018045
Match_columns 361
No_of_seqs 452 out of 2992
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:40:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02309 5'-adenylylsulfate re 100.0 4E-90 8.8E-95 651.3 38.4 355 1-361 102-457 (457)
2 TIGR00424 APS_reduc 5'-adenyly 100.0 9.4E-90 2E-94 648.7 37.9 357 1-361 107-463 (463)
3 TIGR02057 PAPS_reductase phosp 100.0 2.4E-58 5.2E-63 402.6 20.8 204 1-217 17-226 (226)
4 TIGR00434 cysH phosophoadenyly 100.0 1.7E-56 3.6E-61 390.8 21.5 205 1-218 5-212 (212)
5 PRK02090 phosphoadenosine phos 100.0 1.4E-56 3E-61 397.4 21.1 207 1-220 32-239 (241)
6 KOG0189 Phosphoadenosine phosp 100.0 2.7E-57 5.9E-62 368.5 12.4 213 1-224 38-253 (261)
7 TIGR02055 APS_reductase thiore 100.0 2.7E-54 5.8E-59 368.8 19.5 189 19-216 3-191 (191)
8 COG0175 CysH 3'-phosphoadenosi 100.0 2.7E-53 5.8E-58 378.7 18.2 212 2-223 32-247 (261)
9 PRK12563 sulfate adenylyltrans 100.0 2.3E-44 4.9E-49 322.6 17.7 170 1-180 30-222 (312)
10 TIGR02039 CysD sulfate adenyly 100.0 3E-43 6.4E-48 314.8 16.7 186 1-196 12-253 (294)
11 PRK08557 hypothetical protein; 100.0 3.1E-42 6.7E-47 323.4 18.6 181 1-194 170-359 (417)
12 PF01507 PAPS_reduct: Phosphoa 100.0 8.9E-43 1.9E-47 295.8 12.0 170 11-192 1-174 (174)
13 PRK05253 sulfate adenylyltrans 100.0 7.5E-42 1.6E-46 308.8 18.0 186 1-196 20-260 (301)
14 PRK13794 hypothetical protein; 100.0 1.5E-41 3.3E-46 326.5 17.2 180 1-193 239-424 (479)
15 PRK13795 hypothetical protein; 100.0 1E-38 2.2E-43 317.5 17.1 181 1-193 235-420 (636)
16 PRK08576 hypothetical protein; 100.0 2.2E-35 4.7E-40 277.6 16.5 176 4-193 228-407 (438)
17 cd01713 PAPS_reductase This do 100.0 2.3E-34 4.9E-39 243.4 17.0 167 11-185 1-173 (173)
18 TIGR03183 DNA_S_dndC putative 100.0 2.6E-32 5.5E-37 257.1 14.4 189 2-192 6-248 (447)
19 PRK06850 hypothetical protein; 100.0 8.9E-32 1.9E-36 255.9 14.2 183 9-193 34-268 (507)
20 COG3969 Predicted phosphoadeno 99.9 2.5E-24 5.4E-29 189.4 8.4 201 1-204 20-264 (407)
21 cd03006 PDI_a_EFP1_N PDIa fami 99.9 5.8E-23 1.3E-27 159.8 12.8 107 247-357 7-113 (113)
22 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.9E-21 4.1E-26 149.6 12.5 99 250-356 2-100 (101)
23 KOG0910 Thioredoxin-like prote 99.9 1.4E-21 3.1E-26 154.7 10.4 104 250-360 44-147 (150)
24 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 3.9E-21 8.5E-26 148.6 12.3 102 250-357 2-104 (104)
25 cd02996 PDI_a_ERp44 PDIa famil 99.9 5.7E-21 1.2E-25 148.8 12.4 102 250-357 2-108 (108)
26 cd03065 PDI_b_Calsequestrin_N 99.9 9.4E-21 2E-25 148.4 12.0 104 249-360 9-118 (120)
27 cd02993 PDI_a_APS_reductase PD 99.8 2.1E-20 4.5E-25 145.7 12.5 108 250-357 2-109 (109)
28 PF00085 Thioredoxin: Thioredo 99.8 3.1E-20 6.7E-25 143.1 12.9 102 251-359 1-102 (103)
29 cd02994 PDI_a_TMX PDIa family, 99.8 3.6E-20 7.8E-25 142.4 12.7 100 250-359 2-101 (101)
30 cd02963 TRX_DnaJ TRX domain, D 99.8 3.3E-20 7.2E-25 144.9 11.3 105 252-360 7-111 (111)
31 COG3118 Thioredoxin domain-con 99.8 7.2E-20 1.6E-24 160.3 12.3 107 249-360 23-129 (304)
32 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.3E-19 2.8E-24 141.3 12.4 103 250-358 1-109 (109)
33 cd03001 PDI_a_P5 PDIa family, 99.8 4.8E-19 1E-23 136.5 13.1 102 250-357 1-102 (103)
34 PTZ00443 Thioredoxin domain-co 99.8 4.3E-19 9.4E-24 154.1 13.4 107 248-359 29-137 (224)
35 PHA02278 thioredoxin-like prot 99.8 3.2E-19 6.9E-24 136.5 10.8 94 256-356 4-100 (103)
36 cd03005 PDI_a_ERp46 PDIa famil 99.8 4.3E-19 9.4E-24 136.5 11.7 100 250-357 1-102 (102)
37 cd02954 DIM1 Dim1 family; Dim1 99.8 1.9E-19 4.1E-24 138.8 9.3 79 256-338 2-80 (114)
38 PRK10996 thioredoxin 2; Provis 99.8 2.8E-18 6.1E-23 139.4 16.2 104 250-361 36-139 (139)
39 cd02999 PDI_a_ERp44_like PDIa 99.8 4.8E-19 1.1E-23 135.5 10.7 92 258-357 8-100 (100)
40 cd02948 TRX_NDPK TRX domain, T 99.8 8.2E-19 1.8E-23 135.0 11.4 98 254-360 5-102 (102)
41 cd02956 ybbN ybbN protein fami 99.8 1.1E-18 2.4E-23 132.8 11.9 96 257-358 1-96 (96)
42 PRK09381 trxA thioredoxin; Pro 99.8 2E-18 4.3E-23 134.6 13.5 106 248-360 2-107 (109)
43 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2.6E-18 5.7E-23 132.6 12.1 102 250-357 1-104 (104)
44 cd02997 PDI_a_PDIR PDIa family 99.8 3.2E-18 6.9E-23 132.1 12.0 101 250-357 1-104 (104)
45 cd02985 TRX_CDSP32 TRX family, 99.8 3.1E-18 6.7E-23 132.0 11.8 98 255-359 2-101 (103)
46 cd02998 PDI_a_ERp38 PDIa famil 99.8 3.6E-18 7.8E-23 132.0 11.9 102 251-357 2-105 (105)
47 cd02962 TMX2 TMX2 family; comp 99.8 3.5E-18 7.6E-23 139.7 12.2 87 249-338 28-120 (152)
48 KOG0907 Thioredoxin [Posttrans 99.8 2.6E-18 5.6E-23 131.5 10.4 86 268-360 20-105 (106)
49 TIGR01126 pdi_dom protein disu 99.8 5.8E-18 1.3E-22 130.1 12.3 100 254-360 1-101 (102)
50 cd03007 PDI_a_ERp29_N PDIa fam 99.8 3.7E-18 8E-23 132.0 11.0 101 250-360 2-115 (116)
51 cd02965 HyaE HyaE family; HyaE 99.8 2.9E-18 6.4E-23 131.2 10.3 99 248-354 9-109 (111)
52 KOG0190 Protein disulfide isom 99.8 1.8E-18 3.8E-23 163.4 10.6 106 247-359 23-130 (493)
53 cd03000 PDI_a_TMX3 PDIa family 99.8 1E-17 2.3E-22 129.4 11.9 95 257-360 7-103 (104)
54 cd02989 Phd_like_TxnDC9 Phosdu 99.8 1.3E-17 2.7E-22 130.5 11.7 102 249-357 4-112 (113)
55 PLN00410 U5 snRNP protein, DIM 99.7 1.5E-17 3.3E-22 133.2 12.1 101 255-360 10-119 (142)
56 cd02986 DLP Dim1 family, Dim1- 99.7 2.7E-17 5.9E-22 125.6 12.1 100 257-360 3-110 (114)
57 KOG0190 Protein disulfide isom 99.7 6.7E-18 1.4E-22 159.5 10.6 123 230-359 347-471 (493)
58 cd02957 Phd_like Phosducin (Ph 99.7 2.3E-17 5E-22 129.4 10.8 103 249-357 4-112 (113)
59 cd02992 PDI_a_QSOX PDIa family 99.7 6.8E-17 1.5E-21 126.7 12.6 103 250-356 2-111 (114)
60 TIGR01068 thioredoxin thioredo 99.7 9.2E-17 2E-21 123.0 12.6 100 254-360 1-100 (101)
61 cd02961 PDI_a_family Protein D 99.7 5.5E-17 1.2E-21 123.9 11.2 99 253-357 2-101 (101)
62 cd02953 DsbDgamma DsbD gamma f 99.7 1.1E-16 2.4E-21 123.6 10.6 95 257-358 2-104 (104)
63 cd02984 TRX_PICOT TRX domain, 99.7 1.5E-16 3.1E-21 121.3 10.6 95 256-357 2-96 (97)
64 cd02987 Phd_like_Phd Phosducin 99.7 1.7E-16 3.7E-21 133.6 11.2 107 249-360 62-174 (175)
65 cd02950 TxlA TRX-like protein 99.7 3.5E-16 7.6E-21 127.4 12.7 98 256-360 10-109 (142)
66 cd01992 PP-ATPase N-terminal d 99.7 1.7E-16 3.6E-21 135.8 10.2 154 11-177 1-167 (185)
67 cd02949 TRX_NTR TRX domain, no 99.7 1E-15 2.2E-20 116.6 11.0 87 267-358 11-97 (97)
68 PTZ00051 thioredoxin; Provisio 99.7 6.9E-16 1.5E-20 117.7 10.0 94 251-354 2-96 (98)
69 TIGR01130 ER_PDI_fam protein d 99.7 1.1E-15 2.3E-20 149.3 13.5 105 250-360 2-108 (462)
70 PTZ00102 disulphide isomerase; 99.6 1.8E-15 4E-20 148.4 14.6 108 248-360 356-464 (477)
71 PTZ00102 disulphide isomerase; 99.6 1.4E-15 3E-20 149.2 13.7 104 249-360 32-137 (477)
72 KOG0912 Thiol-disulfide isomer 99.6 4.1E-16 8.9E-21 135.8 8.7 101 254-360 1-105 (375)
73 TIGR01295 PedC_BrcD bacterioci 99.6 2.1E-15 4.6E-20 119.3 11.6 101 250-358 7-121 (122)
74 cd02975 PfPDO_like_N Pyrococcu 99.6 2.1E-15 4.5E-20 118.0 10.8 88 268-360 21-109 (113)
75 TIGR02432 lysidine_TilS_N tRNA 99.6 1.9E-15 4.1E-20 129.8 11.1 157 11-177 1-171 (189)
76 cd01993 Alpha_ANH_like_II This 99.6 1.5E-15 3.2E-20 129.9 9.8 160 11-176 1-177 (185)
77 cd02988 Phd_like_VIAF Phosduci 99.6 2.6E-15 5.7E-20 128.0 10.4 104 249-359 82-190 (192)
78 KOG4277 Uncharacterized conser 99.6 1.4E-15 3E-20 132.2 7.3 89 267-360 41-131 (468)
79 KOG0908 Thioredoxin-like prote 99.6 3.4E-15 7.3E-20 126.8 9.4 102 251-360 3-105 (288)
80 cd02951 SoxW SoxW family; SoxW 99.6 1.3E-14 2.7E-19 116.0 11.5 91 267-360 11-118 (125)
81 cd02952 TRP14_like Human TRX-r 99.6 9.9E-15 2.1E-19 114.0 10.0 96 256-357 9-118 (119)
82 cd02947 TRX_family TRX family; 99.6 2.5E-14 5.4E-19 107.1 10.8 92 258-358 2-93 (93)
83 cd02982 PDI_b'_family Protein 99.6 3.3E-14 7.1E-19 109.5 10.9 88 268-360 11-102 (103)
84 TIGR01130 ER_PDI_fam protein d 99.5 7.2E-14 1.6E-18 136.4 13.4 106 248-360 345-453 (462)
85 PRK10696 tRNA 2-thiocytidine b 99.5 1.9E-13 4.2E-18 122.8 12.0 163 3-174 18-198 (258)
86 COG1606 ATP-utilizing enzymes 99.5 2.1E-13 4.7E-18 116.9 10.4 147 3-174 12-167 (269)
87 PF01171 ATP_bind_3: PP-loop f 99.5 5.8E-14 1.3E-18 119.6 6.7 152 11-175 1-165 (182)
88 TIGR00411 redox_disulf_1 small 99.5 5.2E-13 1.1E-17 98.2 10.3 80 272-360 2-81 (82)
89 cd02959 ERp19 Endoplasmic reti 99.4 2.7E-13 5.9E-18 106.5 7.7 98 258-358 7-110 (117)
90 TIGR00268 conserved hypothetic 99.4 1.6E-12 3.4E-17 116.4 13.2 148 2-174 6-161 (252)
91 cd01990 Alpha_ANH_like_I This 99.4 1.1E-12 2.5E-17 113.7 11.3 142 12-173 1-148 (202)
92 PTZ00062 glutaredoxin; Provisi 99.4 1.4E-12 3.1E-17 111.5 10.3 89 255-360 5-93 (204)
93 COG0037 MesJ tRNA(Ile)-lysidin 99.4 6.5E-13 1.4E-17 122.3 8.6 154 10-173 22-188 (298)
94 TIGR02187 GlrX_arch Glutaredox 99.4 7.5E-13 1.6E-17 115.8 8.2 89 269-360 19-110 (215)
95 KOG0191 Thioredoxin/protein di 99.4 2.7E-12 5.8E-17 122.2 10.6 101 252-359 32-132 (383)
96 cd02955 SSP411 TRX domain, SSP 99.4 3.6E-12 7.8E-17 100.7 9.5 99 255-360 4-118 (124)
97 cd01997 GMP_synthase_C The C-t 99.4 1.1E-11 2.3E-16 112.5 13.5 167 11-183 1-176 (295)
98 PRK00293 dipZ thiol:disulfide 99.3 5.8E-12 1.3E-16 125.1 11.8 103 255-361 459-570 (571)
99 PRK03147 thiol-disulfide oxido 99.3 1.9E-11 4.2E-16 103.2 12.9 92 268-361 60-172 (173)
100 TIGR00412 redox_disulf_2 small 99.3 6.4E-12 1.4E-16 90.8 8.2 74 273-357 2-75 (76)
101 cd01712 ThiI ThiI is required 99.3 1.5E-11 3.3E-16 104.3 11.7 149 11-173 1-158 (177)
102 cd01995 ExsB ExsB is a transcr 99.3 4.7E-11 1E-15 100.5 14.3 140 11-179 1-146 (169)
103 KOG0191 Thioredoxin/protein di 99.3 7.3E-12 1.6E-16 119.2 10.6 106 250-360 145-251 (383)
104 PRK00143 mnmA tRNA-specific 2- 99.3 3.8E-11 8.3E-16 112.1 14.9 157 11-174 2-183 (346)
105 TIGR02187 GlrX_arch Glutaredox 99.3 1.3E-11 2.8E-16 108.0 10.4 95 253-359 119-214 (215)
106 KOG2644 3'-phosphoadenosine 5' 99.3 1.4E-12 3E-17 113.8 4.1 152 11-193 84-248 (282)
107 PHA02125 thioredoxin-like prot 99.3 1.5E-11 3.3E-16 88.7 8.7 72 273-357 2-73 (75)
108 KOG1731 FAD-dependent sulfhydr 99.3 3.6E-12 7.7E-17 120.7 6.5 107 248-358 38-150 (606)
109 PRK00074 guaA GMP synthase; Re 99.3 3.1E-11 6.8E-16 118.2 13.0 167 10-183 216-391 (511)
110 PRK14018 trifunctional thiored 99.3 2.2E-11 4.7E-16 117.8 11.6 88 268-359 55-171 (521)
111 TIGR00884 guaA_Cterm GMP synth 99.3 5.9E-11 1.3E-15 108.7 13.9 167 10-182 17-190 (311)
112 PRK00919 GMP synthase subunit 99.3 5.2E-11 1.1E-15 108.4 13.2 163 10-182 22-188 (307)
113 TIGR02738 TrbB type-F conjugat 99.3 5.1E-11 1.1E-15 97.8 11.1 89 268-360 49-152 (153)
114 TIGR02740 TraF-like TraF-like 99.3 3.9E-11 8.5E-16 108.0 11.1 88 268-360 165-263 (271)
115 PRK14561 hypothetical protein; 99.3 9.8E-11 2.1E-15 100.4 13.0 139 11-169 2-146 (194)
116 TIGR00420 trmU tRNA (5-methyla 99.2 9.5E-11 2.1E-15 109.4 13.3 161 11-175 2-188 (352)
117 cd03008 TryX_like_RdCVF Trypar 99.2 5.7E-11 1.2E-15 96.4 9.8 75 268-345 24-130 (146)
118 PF13098 Thioredoxin_2: Thiore 99.2 2.8E-11 6E-16 94.5 6.5 87 267-357 3-112 (112)
119 cd01998 tRNA_Me_trans tRNA met 99.2 3.8E-10 8.3E-15 105.6 15.2 159 11-173 1-183 (349)
120 PRK10660 tilS tRNA(Ile)-lysidi 99.2 5.8E-11 1.3E-15 114.2 9.7 154 9-176 15-180 (436)
121 cd02973 TRX_GRX_like Thioredox 99.2 7.7E-11 1.7E-15 83.0 7.1 56 273-332 3-58 (67)
122 cd03009 TryX_like_TryX_NRX Try 99.2 1.7E-10 3.8E-15 92.7 10.0 69 268-337 17-111 (131)
123 PRK14665 mnmA tRNA-specific 2- 99.2 5.4E-10 1.2E-14 104.3 14.6 171 10-190 6-196 (360)
124 cd02964 TryX_like_family Trypa 99.2 1.7E-10 3.6E-15 93.0 9.6 76 268-345 16-117 (132)
125 PRK15412 thiol:disulfide inter 99.2 2.8E-10 6.1E-15 97.1 11.3 86 268-360 67-175 (185)
126 PRK08349 hypothetical protein; 99.2 2.1E-10 4.7E-15 98.9 10.0 149 11-172 2-159 (198)
127 PF13905 Thioredoxin_8: Thiore 99.1 3.4E-10 7.3E-15 85.6 9.6 68 269-337 1-93 (95)
128 cd03010 TlpA_like_DsbE TlpA-li 99.1 3.7E-10 7.9E-15 90.3 9.7 79 268-353 24-126 (127)
129 PRK11509 hydrogenase-1 operon 99.1 1.1E-09 2.4E-14 86.5 11.3 104 250-360 18-123 (132)
130 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 5.4E-10 1.2E-14 88.7 9.7 93 253-355 7-120 (123)
131 TIGR00385 dsbE periplasmic pro 99.1 6E-10 1.3E-14 94.1 10.1 85 268-360 62-170 (173)
132 cd02958 UAS UAS family; UAS is 99.1 1.6E-09 3.4E-14 85.0 11.0 101 257-360 4-110 (114)
133 PRK08384 thiamine biosynthesis 99.1 1.3E-09 2.9E-14 102.2 11.7 158 10-190 181-352 (381)
134 TIGR00552 nadE NAD+ synthetase 99.1 2.4E-09 5.3E-14 95.8 12.6 148 10-173 23-177 (250)
135 TIGR00364 exsB protein. This p 99.0 4E-09 8.7E-14 91.3 13.4 162 12-179 1-184 (201)
136 PRK11106 queuosine biosynthesi 99.0 3.5E-09 7.6E-14 92.7 12.7 177 10-190 2-201 (231)
137 PLN02347 GMP synthetase 99.0 1.8E-09 3.9E-14 105.8 11.9 164 10-183 230-415 (536)
138 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 1.4E-09 3E-14 80.9 8.6 76 269-354 12-87 (89)
139 cd01996 Alpha_ANH_like_III Thi 99.0 1.8E-09 3.8E-14 89.4 10.0 110 11-123 3-116 (154)
140 TIGR00032 argG argininosuccina 99.0 2.6E-09 5.6E-14 100.7 11.9 148 11-174 1-163 (394)
141 PRK13728 conjugal transfer pro 99.0 5.1E-09 1.1E-13 87.6 12.0 83 273-360 73-170 (181)
142 cd02966 TlpA_like_family TlpA- 99.0 2.2E-09 4.8E-14 83.4 9.3 69 268-337 18-108 (116)
143 PRK14664 tRNA-specific 2-thiou 99.0 2.6E-09 5.7E-14 99.5 11.3 157 10-173 6-177 (362)
144 PLN02919 haloacid dehalogenase 99.0 1.7E-09 3.7E-14 114.6 11.3 89 268-360 419-535 (1057)
145 PRK13820 argininosuccinate syn 99.0 4.2E-09 9.2E-14 98.9 12.3 149 10-174 3-164 (394)
146 KOG0914 Thioredoxin-like prote 99.0 6.6E-10 1.4E-14 92.8 6.0 88 248-338 123-217 (265)
147 PRK00509 argininosuccinate syn 99.0 4.1E-09 8.9E-14 99.0 11.9 150 10-174 3-167 (399)
148 cd02967 mauD Methylamine utili 99.0 2.7E-09 5.8E-14 83.5 9.0 68 268-337 20-106 (114)
149 cd00553 NAD_synthase NAD+ synt 99.0 7.2E-09 1.6E-13 92.7 12.6 148 10-173 24-179 (248)
150 cd01999 Argininosuccinate_Synt 99.0 4.5E-09 9.7E-14 98.8 11.6 153 12-176 1-166 (385)
151 TIGR00342 thiazole biosynthesi 99.0 4.9E-09 1.1E-13 99.0 11.4 143 10-171 173-328 (371)
152 KOG0913 Thiol-disulfide isomer 99.0 1.9E-10 4.1E-15 97.4 1.6 101 249-359 24-124 (248)
153 COG4232 Thiol:disulfide interc 99.0 2.6E-09 5.7E-14 102.6 9.5 104 253-360 458-567 (569)
154 cd03012 TlpA_like_DipZ_like Tl 99.0 4.1E-09 8.8E-14 84.1 9.0 75 268-343 22-122 (126)
155 PLN00200 argininosuccinate syn 98.9 5.9E-09 1.3E-13 98.1 11.3 148 10-174 6-171 (404)
156 TIGR02661 MauD methylamine deh 98.9 9.9E-09 2.1E-13 87.9 11.3 87 268-360 73-178 (189)
157 smart00594 UAS UAS domain. 98.9 1.3E-08 2.7E-13 80.8 10.8 100 256-357 13-121 (122)
158 cd02960 AGR Anterior Gradient 98.9 1E-08 2.2E-13 81.0 10.1 77 258-338 11-91 (130)
159 PRK04527 argininosuccinate syn 98.9 9.9E-09 2.1E-13 96.1 11.7 147 10-174 3-169 (400)
160 PF13899 Thioredoxin_7: Thiore 98.9 3.7E-09 7.9E-14 77.6 6.6 64 267-334 15-81 (82)
161 PRK13980 NAD synthetase; Provi 98.9 1.7E-08 3.6E-13 91.1 12.2 152 3-172 23-180 (265)
162 PF08534 Redoxin: Redoxin; In 98.9 1.6E-08 3.5E-13 82.8 10.3 77 268-345 27-133 (146)
163 PRK01565 thiamine biosynthesis 98.8 1.9E-08 4.1E-13 95.8 10.9 143 10-171 177-332 (394)
164 PLN02399 phospholipid hydroper 98.8 4.8E-08 1E-12 85.8 12.0 92 268-360 98-233 (236)
165 PTZ00056 glutathione peroxidas 98.8 3.1E-08 6.6E-13 85.4 10.2 44 268-311 38-81 (199)
166 PF02114 Phosducin: Phosducin; 98.8 2.1E-08 4.6E-13 89.6 8.3 106 249-359 125-236 (265)
167 TIGR03573 WbuX N-acetyl sugar 98.8 4.2E-08 9E-13 91.8 10.6 109 11-121 61-172 (343)
168 PLN02412 probable glutathione 98.7 1E-07 2.3E-12 79.9 10.8 91 268-360 28-163 (167)
169 TIGR02540 gpx7 putative glutat 98.7 9.7E-08 2.1E-12 78.9 10.2 92 268-360 21-152 (153)
170 PF06508 QueC: Queuosine biosy 98.7 2.9E-08 6.2E-13 86.0 7.1 179 11-190 1-197 (209)
171 cd02969 PRX_like1 Peroxiredoxi 98.7 1.6E-07 3.4E-12 79.1 11.0 90 268-360 24-151 (171)
172 COG2117 Predicted subunit of t 98.7 4.6E-08 1E-12 78.1 6.8 139 11-166 2-145 (198)
173 PRK01269 tRNA s(4)U8 sulfurtra 98.7 1.1E-07 2.4E-12 92.9 10.3 144 10-171 178-333 (482)
174 cd01994 Alpha_ANH_like_IV This 98.7 8.5E-08 1.8E-12 82.1 8.2 131 11-172 1-139 (194)
175 TIGR01626 ytfJ_HI0045 conserve 98.7 1.1E-07 2.3E-12 80.2 8.5 85 268-358 58-177 (184)
176 PF03054 tRNA_Me_trans: tRNA m 98.6 1.4E-07 2.9E-12 87.8 9.2 159 11-173 2-187 (356)
177 TIGR02196 GlrX_YruB Glutaredox 98.6 1.7E-07 3.8E-12 66.7 7.5 69 273-358 2-74 (74)
178 cd00340 GSH_Peroxidase Glutath 98.6 1.8E-07 3.9E-12 77.2 8.1 43 268-311 21-63 (152)
179 PF01216 Calsequestrin: Calseq 98.6 3.4E-07 7.4E-12 82.3 10.2 103 249-360 34-143 (383)
180 COG0526 TrxA Thiol-disulfide i 98.6 2.7E-07 5.9E-12 71.4 8.7 67 269-338 32-101 (127)
181 KOG2501 Thioredoxin, nucleored 98.6 1.2E-07 2.7E-12 76.4 6.6 69 268-337 32-126 (157)
182 COG2143 Thioredoxin-related pr 98.6 1.2E-06 2.5E-11 69.9 11.7 92 264-358 37-146 (182)
183 PF13728 TraF: F plasmid trans 98.5 8.3E-07 1.8E-11 77.2 11.1 85 268-357 119-214 (215)
184 cd01659 TRX_superfamily Thiore 98.5 4.6E-07 9.9E-12 61.9 7.5 61 273-336 1-63 (69)
185 COG0482 TrmU Predicted tRNA(5- 98.5 1.7E-06 3.6E-11 79.5 12.6 167 10-178 4-190 (356)
186 COG0603 Predicted PP-loop supe 98.5 6.4E-07 1.4E-11 76.8 9.1 170 10-190 3-199 (222)
187 cd01986 Alpha_ANH_like Adenine 98.5 4.6E-07 9.9E-12 69.5 7.3 44 12-55 1-47 (103)
188 cd03017 PRX_BCP Peroxiredoxin 98.5 9.8E-07 2.1E-11 71.5 9.1 88 268-357 22-139 (140)
189 TIGR02200 GlrX_actino Glutared 98.4 1.1E-06 2.5E-11 63.2 8.0 70 273-358 2-76 (77)
190 PF00578 AhpC-TSA: AhpC/TSA fa 98.4 1.4E-06 3E-11 69.0 8.5 69 268-337 24-119 (124)
191 PF06110 DUF953: Eukaryotic pr 98.4 1.7E-06 3.6E-11 67.4 8.4 97 257-358 6-118 (119)
192 TIGR03137 AhpC peroxiredoxin. 98.4 2.5E-06 5.3E-11 72.9 10.1 92 268-360 30-155 (187)
193 PF13848 Thioredoxin_6: Thiore 98.4 6.7E-06 1.5E-10 69.8 12.5 104 249-359 77-184 (184)
194 KOG3425 Uncharacterized conser 98.4 1.8E-06 4E-11 65.6 7.7 78 257-336 13-105 (128)
195 PTZ00256 glutathione peroxidas 98.4 3.4E-06 7.4E-11 71.8 10.3 44 268-311 39-83 (183)
196 PF03190 Thioredox_DsbH: Prote 98.4 1.1E-06 2.4E-11 72.0 6.7 79 253-337 24-113 (163)
197 KOG1672 ATP binding protein [P 98.3 9.2E-07 2E-11 73.1 5.4 82 250-338 67-149 (211)
198 cd02991 UAS_ETEA UAS family, E 98.3 5.5E-06 1.2E-10 64.7 9.5 100 258-360 5-112 (116)
199 cd03015 PRX_Typ2cys Peroxiredo 98.3 5.3E-06 1.2E-10 69.9 10.2 92 268-360 28-156 (173)
200 PF02568 ThiI: Thiamine biosyn 98.3 2.9E-06 6.3E-11 72.3 8.1 145 10-171 4-161 (197)
201 PRK10382 alkyl hydroperoxide r 98.3 1E-05 2.2E-10 68.9 11.5 93 268-361 30-156 (187)
202 PTZ00323 NAD+ synthase; Provis 98.3 1.3E-05 2.7E-10 72.9 12.5 150 10-172 47-211 (294)
203 PF07912 ERp29_N: ERp29, N-ter 98.3 3.3E-05 7.2E-10 59.4 12.7 104 249-359 4-117 (126)
204 TIGR03679 arCOG00187 arCOG0018 98.3 3.3E-06 7.1E-11 73.8 8.4 129 13-172 1-137 (218)
205 PRK09437 bcp thioredoxin-depen 98.3 9E-06 1.9E-10 67.1 10.2 89 268-358 29-150 (154)
206 TIGR02739 TraF type-F conjugat 98.3 8.6E-06 1.9E-10 72.2 10.5 87 269-359 150-246 (256)
207 PF02540 NAD_synthase: NAD syn 98.2 1.4E-06 3.1E-11 77.2 5.5 155 4-176 12-173 (242)
208 cd02970 PRX_like2 Peroxiredoxi 98.2 9.4E-06 2E-10 66.4 9.5 45 269-313 23-68 (149)
209 KOG2805 tRNA (5-methylaminomet 98.2 4.4E-05 9.4E-10 67.9 13.8 162 10-173 6-193 (377)
210 TIGR02180 GRX_euk Glutaredoxin 98.2 3.5E-06 7.6E-11 61.7 6.0 59 273-337 1-63 (84)
211 KOG2603 Oligosaccharyltransfer 98.2 1.5E-05 3.2E-10 71.0 10.5 110 248-359 39-164 (331)
212 PRK00522 tpx lipid hydroperoxi 98.2 1.2E-05 2.6E-10 67.4 9.4 88 268-358 43-166 (167)
213 PRK13703 conjugal pilus assemb 98.2 1.8E-05 3.9E-10 69.8 10.8 87 269-359 143-239 (248)
214 PF13192 Thioredoxin_3: Thiore 98.2 1.6E-05 3.5E-10 57.2 8.8 74 274-358 3-76 (76)
215 cd03018 PRX_AhpE_like Peroxire 98.2 1.3E-05 2.8E-10 65.7 9.1 88 269-358 28-148 (149)
216 PF14595 Thioredoxin_9: Thiore 98.2 7.1E-06 1.5E-10 65.4 7.1 86 268-360 40-128 (129)
217 PRK13190 putative peroxiredoxi 98.1 1.8E-05 3.9E-10 68.5 9.8 92 269-361 27-154 (202)
218 KOG3414 Component of the U4/U6 98.1 5.2E-05 1.1E-09 58.2 11.0 99 257-359 12-118 (142)
219 PRK00876 nadE NAD synthetase; 98.1 4.8E-05 1E-09 70.1 12.8 61 10-70 34-97 (326)
220 cd03072 PDI_b'_ERp44 PDIb' fam 98.1 3.8E-05 8.3E-10 59.6 10.4 101 251-360 1-107 (111)
221 cd03014 PRX_Atyp2cys Peroxired 98.1 1.2E-05 2.5E-10 65.5 7.4 67 268-337 25-121 (143)
222 PRK15000 peroxidase; Provision 98.1 2.6E-05 5.6E-10 67.3 9.8 92 268-361 33-162 (200)
223 PRK05370 argininosuccinate syn 98.1 4.8E-05 1E-09 71.8 11.7 159 4-174 4-184 (447)
224 PTZ00137 2-Cys peroxiredoxin; 98.0 7.7E-05 1.7E-09 66.6 10.9 93 268-361 97-225 (261)
225 PF02966 DIM1: Mitosis protein 98.0 0.00018 4E-09 56.1 11.5 99 256-359 8-115 (133)
226 cd03016 PRX_1cys Peroxiredoxin 97.9 6.9E-05 1.5E-09 64.9 9.8 90 271-361 28-154 (203)
227 PRK10606 btuE putative glutath 97.9 4.4E-05 9.6E-10 64.6 8.3 43 268-311 24-66 (183)
228 cd02983 P5_C P5 family, C-term 97.9 0.00028 6.1E-09 56.4 12.4 105 250-360 3-114 (130)
229 PRK02628 nadE NAD synthetase; 97.9 0.00012 2.6E-09 74.8 12.3 145 10-170 362-522 (679)
230 PRK11200 grxA glutaredoxin 1; 97.9 4.5E-05 9.7E-10 56.2 6.5 75 272-359 2-81 (85)
231 cd02971 PRX_family Peroxiredox 97.9 8.1E-05 1.8E-09 60.1 8.6 45 268-312 21-66 (140)
232 cd02981 PDI_b_family Protein D 97.9 0.00019 4E-09 54.1 10.0 88 258-359 9-96 (97)
233 cd02976 NrdH NrdH-redoxin (Nrd 97.9 8.3E-05 1.8E-09 52.5 7.4 68 273-357 2-73 (73)
234 cd03073 PDI_b'_ERp72_ERp57 PDI 97.8 0.00022 4.8E-09 55.2 10.0 100 252-360 2-110 (111)
235 cd02968 SCO SCO (an acronym fo 97.8 7.8E-05 1.7E-09 60.4 7.7 45 268-312 21-69 (142)
236 KOG0911 Glutaredoxin-related p 97.8 1.9E-05 4.1E-10 67.2 4.0 67 268-338 16-82 (227)
237 PRK13599 putative peroxiredoxi 97.8 0.00013 2.8E-09 63.6 9.4 92 269-361 28-156 (215)
238 PRK13189 peroxiredoxin; Provis 97.8 0.00014 3E-09 63.8 9.5 93 268-361 34-163 (222)
239 cd01991 Asn_Synthase_B_C The C 97.8 7.6E-05 1.6E-09 67.5 8.1 106 10-122 16-129 (269)
240 PF00764 Arginosuc_synth: Argi 97.8 3.8E-05 8.3E-10 71.9 5.3 149 13-176 1-164 (388)
241 PRK13191 putative peroxiredoxi 97.7 0.00023 5E-09 62.1 9.8 93 268-361 32-161 (215)
242 COG0519 GuaA GMP synthase, PP- 97.7 0.00023 5E-09 62.5 9.4 171 5-185 16-197 (315)
243 TIGR00290 MJ0570_dom MJ0570-re 97.7 0.00016 3.4E-09 63.0 8.4 126 11-172 2-136 (223)
244 PRK13981 NAD synthetase; Provi 97.7 0.0004 8.6E-09 69.4 12.4 66 3-68 273-342 (540)
245 KOG3170 Conserved phosducin-li 97.7 0.00038 8.2E-09 58.1 9.2 104 249-359 91-199 (240)
246 PRK15317 alkyl hydroperoxide r 97.7 0.00031 6.8E-09 69.7 10.5 97 251-359 100-196 (517)
247 KOG2840 Uncharacterized conser 97.6 1.7E-05 3.6E-10 71.0 0.9 159 9-171 51-231 (347)
248 PRK10877 protein disulfide iso 97.6 0.00044 9.6E-09 61.0 9.7 81 268-360 106-230 (232)
249 TIGR03143 AhpF_homolog putativ 97.6 0.00034 7.4E-09 70.0 10.1 95 250-357 459-554 (555)
250 PTZ00253 tryparedoxin peroxida 97.6 0.00055 1.2E-08 59.1 9.8 92 268-360 35-163 (199)
251 COG0137 ArgG Argininosuccinate 97.6 0.002 4.3E-08 59.5 13.6 148 10-176 5-171 (403)
252 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00076 1.7E-08 49.9 8.6 96 256-359 9-110 (112)
253 KOG3171 Conserved phosducin-li 97.5 0.00025 5.3E-09 59.7 6.7 105 250-359 139-249 (273)
254 PF00462 Glutaredoxin: Glutare 97.5 0.00037 8.1E-09 47.4 6.6 52 273-332 1-55 (60)
255 TIGR02183 GRXA Glutaredoxin, G 97.5 0.00025 5.4E-09 52.3 5.8 74 273-359 2-80 (86)
256 PF05768 DUF836: Glutaredoxin- 97.5 0.00027 5.8E-09 51.5 5.5 80 273-358 2-81 (81)
257 COG0301 ThiI Thiamine biosynth 97.5 0.001 2.2E-08 62.2 10.2 144 10-171 176-332 (383)
258 PF11009 DUF2847: Protein of u 97.5 0.00083 1.8E-08 50.9 7.9 80 255-338 6-90 (105)
259 cd03419 GRX_GRXh_1_2_like Glut 97.4 0.0004 8.7E-09 50.4 6.1 57 273-337 2-62 (82)
260 TIGR00289 conserved hypothetic 97.4 0.00075 1.6E-08 58.8 7.7 120 11-166 2-130 (222)
261 TIGR03140 AhpF alkyl hydropero 97.3 0.0015 3.1E-08 65.0 10.6 95 252-358 102-196 (515)
262 PRK00768 nadE NAD synthetase; 97.3 0.0017 3.7E-08 58.2 9.2 148 10-172 39-200 (268)
263 cd03020 DsbA_DsbC_DsbG DsbA fa 97.3 0.0011 2.4E-08 57.1 7.7 77 268-357 76-197 (197)
264 cd01984 AANH_like Adenine nucl 97.3 0.0011 2.3E-08 48.8 6.6 53 12-70 1-57 (86)
265 PF07449 HyaE: Hydrogenase-1 e 97.3 0.00064 1.4E-08 51.8 5.3 89 248-344 8-98 (107)
266 PRK10329 glutaredoxin-like pro 97.2 0.0037 8.1E-08 45.4 9.0 70 273-358 3-74 (81)
267 TIGR02194 GlrX_NrdH Glutaredox 97.2 0.00098 2.1E-08 47.2 5.6 67 273-355 1-70 (72)
268 cd02066 GRX_family Glutaredoxi 97.2 0.0014 3.1E-08 45.7 6.5 55 273-337 2-59 (72)
269 PF00837 T4_deiodinase: Iodoth 97.2 0.0023 5E-08 55.6 8.6 108 248-361 81-237 (237)
270 TIGR02190 GlrX-dom Glutaredoxi 97.1 0.0017 3.7E-08 46.9 6.5 71 269-357 6-78 (79)
271 PF00733 Asn_synthase: Asparag 97.1 0.0023 5E-08 57.0 8.6 109 10-123 18-134 (255)
272 TIGR01536 asn_synth_AEB aspara 97.1 0.0022 4.8E-08 62.9 8.9 106 10-123 254-370 (467)
273 TIGR02189 GlrX-like_plant Glut 97.0 0.002 4.4E-08 48.8 5.9 55 273-337 10-70 (99)
274 cd03027 GRX_DEP Glutaredoxin ( 97.0 0.003 6.6E-08 44.8 6.4 50 273-331 3-56 (73)
275 TIGR02181 GRX_bact Glutaredoxi 97.0 0.0018 4E-08 46.7 5.3 55 273-337 1-58 (79)
276 COG0171 NadE NAD synthase [Coe 97.0 0.0077 1.7E-07 53.9 10.1 151 10-173 26-186 (268)
277 cd03418 GRX_GRXb_1_3_like Glut 97.0 0.003 6.5E-08 44.9 6.2 55 273-337 2-60 (75)
278 PHA03050 glutaredoxin; Provisi 96.9 0.0027 5.9E-08 48.8 6.2 55 273-332 15-75 (108)
279 PRK11657 dsbG disulfide isomer 96.9 0.0059 1.3E-07 54.6 9.2 84 268-358 116-249 (251)
280 COG2102 Predicted ATPases of P 96.9 0.0038 8.2E-08 53.6 7.1 127 11-173 2-138 (223)
281 PF13848 Thioredoxin_6: Thiore 96.8 0.011 2.4E-07 49.8 10.0 68 286-360 7-74 (184)
282 cd03029 GRX_hybridPRX5 Glutare 96.7 0.0061 1.3E-07 43.0 6.4 67 273-357 3-71 (72)
283 KOG1622 GMP synthase [Nucleoti 96.7 0.0069 1.5E-07 56.8 8.2 71 1-71 221-295 (552)
284 COG1365 Predicted ATPase (PP-l 96.7 0.0041 8.8E-08 52.6 5.9 137 10-173 61-204 (255)
285 cd02972 DsbA_family DsbA famil 96.7 0.0066 1.4E-07 45.0 6.5 60 273-334 1-91 (98)
286 TIGR03143 AhpF_homolog putativ 96.6 0.016 3.4E-07 58.2 10.3 87 269-360 366-453 (555)
287 PF01902 ATP_bind_4: ATP-bindi 96.5 0.0023 5E-08 55.7 3.6 125 11-171 2-135 (218)
288 COG0695 GrxC Glutaredoxin and 96.4 0.012 2.7E-07 42.5 6.4 52 273-332 3-59 (80)
289 TIGR00365 monothiol glutaredox 96.4 0.018 3.9E-07 43.4 7.5 56 269-332 11-73 (97)
290 cd03028 GRX_PICOT_like Glutare 96.4 0.015 3.2E-07 43.1 6.8 58 269-337 7-72 (90)
291 PRK10638 glutaredoxin 3; Provi 96.3 0.015 3.3E-07 42.3 6.3 54 273-337 4-61 (83)
292 cd03069 PDI_b_ERp57 PDIb famil 96.1 0.093 2E-06 40.0 10.1 90 255-359 7-102 (104)
293 KOG2640 Thioredoxin [Function 95.6 0.0058 1.3E-07 54.8 1.8 87 268-360 75-161 (319)
294 cd03023 DsbA_Com1_like DsbA fa 95.6 0.03 6.5E-07 45.5 5.7 39 268-308 4-42 (154)
295 COG1331 Highly conserved prote 95.5 0.026 5.6E-07 56.2 5.9 80 252-337 29-120 (667)
296 COG1225 Bcp Peroxiredoxin [Pos 95.3 0.27 5.9E-06 40.3 10.3 92 268-360 29-155 (157)
297 PRK10824 glutaredoxin-4; Provi 95.2 0.075 1.6E-06 41.3 6.4 56 269-332 14-76 (115)
298 cd03066 PDI_b_Calsequestrin_mi 95.0 0.55 1.2E-05 35.5 10.8 97 251-360 2-100 (102)
299 KOG1752 Glutaredoxin and relat 95.0 0.07 1.5E-06 40.6 5.7 58 273-337 16-76 (104)
300 KOG1706 Argininosuccinate synt 94.5 0.42 9.2E-06 43.0 10.0 56 10-67 6-62 (412)
301 PRK12759 bifunctional gluaredo 94.5 0.089 1.9E-06 50.6 6.5 51 273-332 4-66 (410)
302 TIGR03108 eps_aminotran_1 exos 94.5 0.13 2.9E-06 52.4 8.1 107 10-123 259-371 (628)
303 PF13462 Thioredoxin_4: Thiore 94.5 0.13 2.8E-06 42.2 6.7 42 268-310 11-54 (162)
304 PTZ00062 glutaredoxin; Provisi 94.3 0.18 4E-06 43.4 7.2 47 278-332 125-174 (204)
305 cd03013 PRX5_like Peroxiredoxi 94.1 0.14 3E-06 42.2 5.9 44 269-312 29-75 (155)
306 cd03019 DsbA_DsbA DsbA family, 94.0 0.097 2.1E-06 43.8 5.0 38 268-306 14-51 (178)
307 COG0367 AsnB Asparagine syntha 93.5 0.3 6.5E-06 48.7 8.1 103 10-123 231-346 (542)
308 PLN02549 asparagine synthase ( 93.3 0.21 4.6E-06 50.2 6.7 58 10-70 226-295 (578)
309 TIGR03104 trio_amidotrans aspa 93.2 0.51 1.1E-05 47.8 9.3 106 10-123 261-377 (589)
310 PLN02339 NAD+ synthase (glutam 92.4 0.58 1.2E-05 48.3 8.6 60 10-69 349-447 (700)
311 PTZ00077 asparagine synthetase 92.4 0.37 7.9E-06 48.6 6.9 107 10-123 238-363 (586)
312 cd03031 GRX_GRX_like Glutaredo 91.9 0.61 1.3E-05 37.9 6.5 51 273-332 2-66 (147)
313 PRK10954 periplasmic protein d 91.7 0.23 5.1E-06 43.0 4.2 40 269-309 37-79 (207)
314 cd03068 PDI_b_ERp72 PDIb famil 91.6 2.9 6.3E-05 31.9 9.7 95 252-359 3-106 (107)
315 PRK09431 asnB asparagine synth 90.8 0.74 1.6E-05 46.2 7.2 107 10-123 228-355 (554)
316 cd02978 KaiB_like KaiB-like fa 89.7 1.5 3.3E-05 30.8 5.9 61 272-334 3-63 (72)
317 KOG0573 Asparagine synthase [A 89.0 0.87 1.9E-05 43.3 5.5 51 10-62 251-317 (520)
318 KOG2507 Ubiquitin regulatory p 88.8 3.6 7.7E-05 38.9 9.3 99 258-360 7-110 (506)
319 PHA03075 glutaredoxin-like pro 86.8 1.1 2.4E-05 34.3 4.0 29 270-298 2-30 (123)
320 cd03060 GST_N_Omega_like GST_N 86.7 3 6.4E-05 28.9 6.1 53 274-332 2-54 (71)
321 PF10281 Ish1: Putative stress 86.6 0.78 1.7E-05 27.8 2.6 22 156-177 3-24 (38)
322 cd03074 PDI_b'_Calsequestrin_C 85.5 14 0.00031 28.1 10.8 107 252-360 4-119 (120)
323 cd03040 GST_N_mPGES2 GST_N fam 84.6 10 0.00022 26.4 8.2 73 273-360 2-75 (77)
324 cd03041 GST_N_2GST_N GST_N fam 84.2 8.6 0.00019 27.1 7.6 71 273-359 2-75 (77)
325 TIGR02654 circ_KaiB circadian 84.2 3.8 8.3E-05 29.9 5.6 65 270-336 3-67 (87)
326 KOG2792 Putative cytochrome C 83.9 7.7 0.00017 34.3 8.3 89 268-359 138-273 (280)
327 COG0386 BtuE Glutathione perox 83.5 17 0.00036 29.7 9.4 44 268-312 24-67 (162)
328 cd02977 ArsC_family Arsenate R 83.1 1.6 3.5E-05 33.1 3.6 78 273-359 1-85 (105)
329 cd02974 AhpF_NTD_N Alkyl hydro 83.1 16 0.00034 27.2 8.8 75 269-360 18-93 (94)
330 cd02990 UAS_FAF1 UAS family, F 82.2 24 0.00052 28.2 10.9 91 267-359 19-131 (136)
331 PRK09301 circadian clock prote 81.7 9.1 0.0002 28.9 6.9 67 268-336 4-70 (103)
332 PRK15317 alkyl hydroperoxide r 81.0 9.9 0.00022 37.8 9.3 77 268-360 17-93 (517)
333 TIGR03140 AhpF alkyl hydropero 78.7 12 0.00027 37.2 9.1 78 268-360 17-94 (515)
334 PF09673 TrbC_Ftype: Type-F co 77.1 18 0.00038 28.0 7.6 72 255-335 9-80 (113)
335 KOG2594 Uncharacterized conser 76.5 11 0.00023 35.0 7.1 78 94-173 179-265 (396)
336 TIGR00269 conserved hypothetic 76.0 2.6 5.6E-05 32.1 2.7 25 150-174 3-27 (104)
337 cd03036 ArsC_like Arsenate Red 75.9 4 8.8E-05 31.3 3.8 54 274-335 2-58 (111)
338 PF13743 Thioredoxin_5: Thiore 75.0 5.8 0.00013 33.3 4.8 31 275-306 2-32 (176)
339 PRK01655 spxA transcriptional 74.5 5.1 0.00011 31.9 4.1 34 273-313 2-35 (131)
340 KOG4277 Uncharacterized conser 74.2 13 0.00027 33.8 6.8 89 267-359 248-349 (468)
341 cd03059 GST_N_SspA GST_N famil 74.0 7.7 0.00017 26.7 4.6 70 274-359 2-71 (73)
342 PF13417 GST_N_3: Glutathione 73.8 22 0.00047 24.7 6.9 70 275-360 1-70 (75)
343 TIGR01617 arsC_related transcr 73.8 6.1 0.00013 30.6 4.3 33 274-313 2-34 (117)
344 cd03035 ArsC_Yffb Arsenate Red 73.5 4.9 0.00011 30.6 3.7 34 273-313 1-34 (105)
345 COG4545 Glutaredoxin-related p 72.8 6.9 0.00015 27.5 3.8 55 274-337 5-74 (85)
346 cd03051 GST_N_GTT2_like GST_N 72.7 6.9 0.00015 26.8 4.1 53 274-332 2-57 (74)
347 PF07796 DUF1638: Protein of u 72.6 11 0.00024 31.3 5.9 43 36-78 120-163 (166)
348 cd00570 GST_N_family Glutathio 72.0 17 0.00037 24.0 6.0 53 274-332 2-55 (71)
349 COG2761 FrnE Predicted dithiol 71.9 8.1 0.00017 33.7 4.9 39 315-360 174-212 (225)
350 PF13462 Thioredoxin_4: Thiore 69.5 5.1 0.00011 32.6 3.2 37 315-359 126-162 (162)
351 PF02677 DUF208: Uncharacteriz 69.1 59 0.0013 27.3 9.3 95 19-115 8-110 (176)
352 cd03032 ArsC_Spx Arsenate Redu 67.6 11 0.00023 29.1 4.5 34 273-313 2-35 (115)
353 PRK12559 transcriptional regul 67.3 9.8 0.00021 30.2 4.3 34 273-313 2-35 (131)
354 PF09822 ABC_transp_aux: ABC-t 67.2 94 0.002 27.8 11.6 75 247-326 5-88 (271)
355 cd03037 GST_N_GRX2 GST_N famil 67.2 18 0.0004 24.7 5.3 68 274-358 2-70 (71)
356 COG3531 Predicted protein-disu 66.7 9.4 0.0002 32.4 4.1 44 315-359 164-207 (212)
357 TIGR02742 TrbC_Ftype type-F co 66.6 28 0.00061 27.6 6.6 22 315-337 61-82 (130)
358 PF07689 KaiB: KaiB domain; I 66.2 2.8 6E-05 30.4 0.8 55 276-332 3-57 (82)
359 PF02630 SCO1-SenC: SCO1/SenC; 63.3 21 0.00045 29.9 5.7 46 268-313 51-99 (174)
360 PF13743 Thioredoxin_5: Thiore 63.1 6.1 0.00013 33.1 2.5 19 315-334 137-155 (176)
361 PF06053 DUF929: Domain of unk 61.6 20 0.00044 31.9 5.5 59 267-335 56-114 (249)
362 cd03055 GST_N_Omega GST_N fami 61.5 52 0.0011 23.7 7.0 54 273-332 19-72 (89)
363 COG3634 AhpF Alkyl hydroperoxi 61.3 38 0.00082 31.8 7.2 94 253-358 102-195 (520)
364 PRK06702 O-acetylhomoserine am 60.8 80 0.0017 30.7 10.0 107 3-111 68-177 (432)
365 PF04592 SelP_N: Selenoprotein 60.8 16 0.00035 31.9 4.6 46 268-313 25-73 (238)
366 COG0450 AhpC Peroxiredoxin [Po 60.5 68 0.0015 27.3 8.1 92 269-361 33-161 (194)
367 cd03045 GST_N_Delta_Epsilon GS 60.1 14 0.0003 25.5 3.5 52 274-331 2-56 (74)
368 COG3019 Predicted metal-bindin 60.0 23 0.0005 28.3 4.9 73 270-358 25-101 (149)
369 PF01323 DSBA: DSBA-like thior 58.6 17 0.00037 30.4 4.5 37 315-358 157-193 (193)
370 PF00255 GSHPx: Glutathione pe 57.2 26 0.00056 26.8 4.8 82 268-358 20-108 (108)
371 PRK13344 spxA transcriptional 55.9 22 0.00048 28.2 4.4 34 273-313 2-35 (132)
372 cd03025 DsbA_FrnE_like DsbA fa 51.3 21 0.00047 29.9 4.0 28 273-300 3-30 (193)
373 PF08423 Rad51: Rad51; InterP 51.2 44 0.00096 29.9 6.1 47 14-62 44-98 (256)
374 PF10686 DUF2493: Protein of u 51.0 37 0.00079 23.8 4.4 59 11-72 3-68 (71)
375 PF08821 CGGC: CGGC domain; I 50.5 50 0.0011 25.2 5.4 63 4-66 29-104 (107)
376 PF01323 DSBA: DSBA-like thior 50.3 31 0.00067 28.8 4.8 39 272-310 1-39 (193)
377 cd03030 GRX_SH3BGR Glutaredoxi 50.0 62 0.0013 23.9 5.7 41 276-317 4-44 (92)
378 cd03023 DsbA_Com1_like DsbA fa 48.4 26 0.00055 27.9 3.8 35 315-357 119-153 (154)
379 COG1751 Uncharacterized conser 46.8 35 0.00076 27.8 4.1 100 10-122 29-137 (186)
380 COG1999 Uncharacterized protei 46.8 77 0.0017 27.3 6.7 45 268-312 66-114 (207)
381 PRK09028 cystathionine beta-ly 46.8 1.5E+02 0.0033 28.4 9.3 57 12-70 78-134 (394)
382 PRK08133 O-succinylhomoserine 46.6 2E+02 0.0043 27.4 10.2 61 8-70 74-134 (390)
383 PF13778 DUF4174: Domain of un 46.4 1.4E+02 0.003 23.1 9.6 79 279-360 20-111 (118)
384 KOG3425 Uncharacterized conser 46.3 37 0.00081 26.4 4.0 42 3-44 17-75 (128)
385 COG0468 RecA RecA/RadA recombi 46.1 76 0.0017 28.8 6.7 59 12-72 65-124 (279)
386 cd05565 PTS_IIB_lactose PTS_II 45.9 68 0.0015 24.1 5.4 27 11-37 2-33 (99)
387 TIGR01324 cysta_beta_ly_B cyst 45.8 1.8E+02 0.0039 27.6 9.7 66 3-70 57-123 (377)
388 cd03024 DsbA_FrnE DsbA family, 45.8 22 0.00047 30.1 3.2 36 315-357 165-200 (201)
389 cd03146 GAT1_Peptidase_E Type 45.6 88 0.0019 27.0 6.9 106 13-118 2-121 (212)
390 COG1636 Uncharacterized protei 45.0 1.9E+02 0.0042 24.5 8.9 100 11-112 5-113 (204)
391 KOG0912 Thiol-disulfide isomer 43.3 89 0.0019 28.7 6.5 97 249-360 210-318 (375)
392 KOG3125 Thymidine kinase [Nucl 43.0 41 0.00089 28.7 4.1 37 32-68 102-138 (234)
393 cd03056 GST_N_4 GST_N family, 42.6 89 0.0019 21.0 5.4 53 274-332 2-57 (73)
394 COG1651 DsbG Protein-disulfide 42.5 56 0.0012 28.7 5.3 32 269-300 84-115 (244)
395 PRK08574 cystathionine gamma-s 42.2 2E+02 0.0044 27.4 9.4 68 8-78 66-133 (385)
396 cd03026 AhpF_NTD_C TRX-GRX-lik 42.0 1.3E+02 0.0029 21.8 6.4 59 26-86 5-66 (89)
397 KOG2316 Predicted ATPase (PP-l 41.7 34 0.00073 29.7 3.5 27 11-37 2-29 (277)
398 PF01216 Calsequestrin: Calseq 41.5 3.1E+02 0.0067 25.8 11.1 100 249-360 146-246 (383)
399 COG0626 MetC Cystathionine bet 40.9 2.2E+02 0.0048 27.3 9.3 61 10-72 78-138 (396)
400 PRK07050 cystathionine beta-ly 40.3 2.2E+02 0.0048 27.2 9.4 60 9-70 79-138 (394)
401 KOG0571 Asparagine synthase (g 40.1 67 0.0015 30.9 5.5 109 10-123 226-347 (543)
402 KOG2244 Highly conserved prote 40.1 52 0.0011 32.6 4.8 79 252-335 98-186 (786)
403 PRK10490 sensor protein KdpD; 40.0 1.5E+02 0.0033 31.9 8.9 104 10-117 251-374 (895)
404 TIGR00853 pts-lac PTS system, 39.6 1.4E+02 0.003 22.1 6.2 32 10-41 4-40 (95)
405 KOG1651 Glutathione peroxidase 37.8 1.6E+02 0.0035 24.4 6.7 45 268-312 33-77 (171)
406 cd03033 ArsC_15kD Arsenate Red 36.8 45 0.00097 25.7 3.3 34 273-313 2-35 (113)
407 cd03019 DsbA_DsbA DsbA family, 36.4 59 0.0013 26.6 4.3 20 315-337 133-152 (178)
408 PF01053 Cys_Met_Meta_PP: Cys/ 36.4 2.9E+02 0.0063 26.4 9.4 67 10-78 70-137 (386)
409 KOG1422 Intracellular Cl- chan 35.7 2.1E+02 0.0045 24.8 7.3 64 280-359 20-83 (221)
410 PRK08114 cystathionine beta-ly 35.6 2.6E+02 0.0056 26.9 8.9 59 10-70 77-135 (395)
411 COG2205 KdpD Osmosensitive K+ 34.1 1.3E+02 0.0029 31.6 6.9 61 10-70 249-320 (890)
412 PRK08134 O-acetylhomoserine am 34.0 3.6E+02 0.0078 26.2 9.8 60 9-70 78-137 (433)
413 PF11287 DUF3088: Protein of u 33.1 74 0.0016 24.4 3.8 53 281-336 24-78 (112)
414 PRK08248 O-acetylhomoserine am 32.0 2.3E+02 0.0049 27.5 8.1 61 8-70 77-137 (431)
415 PF09547 Spore_IV_A: Stage IV 31.7 1.5E+02 0.0032 28.9 6.3 42 26-67 174-215 (492)
416 PF05988 DUF899: Bacterial pro 31.2 3.3E+02 0.0071 23.6 7.9 83 268-351 67-180 (211)
417 PRK10954 periplasmic protein d 31.1 88 0.0019 26.8 4.6 20 315-337 157-176 (207)
418 cd08539 SAM_PNT-ESE-3-like Ste 30.9 29 0.00063 24.5 1.2 38 155-192 6-47 (74)
419 PF00448 SRP54: SRP54-type pro 30.6 1.8E+02 0.0039 24.8 6.4 55 12-68 5-63 (196)
420 PRK05967 cystathionine beta-ly 30.6 3.9E+02 0.0085 25.6 9.3 58 11-70 80-137 (395)
421 COG1651 DsbG Protein-disulfide 30.6 51 0.0011 28.9 3.1 38 315-360 205-242 (244)
422 PF04134 DUF393: Protein of un 30.5 67 0.0015 24.3 3.4 57 276-337 2-61 (114)
423 PF09140 MipZ: ATPase MipZ; I 30.0 1.5E+02 0.0033 26.5 5.8 53 12-64 3-62 (261)
424 cd03061 GST_N_CLIC GST_N famil 29.7 2.3E+02 0.005 20.8 7.2 66 279-360 20-85 (91)
425 KOG0053 Cystathionine beta-lya 29.3 5E+02 0.011 25.1 9.5 56 11-71 93-151 (409)
426 PF08806 Sep15_SelM: Sep15/Sel 29.3 60 0.0013 23.2 2.7 33 326-359 41-74 (78)
427 cd03049 GST_N_3 GST_N family, 28.7 1.3E+02 0.0028 20.3 4.4 55 274-332 2-56 (73)
428 COG4634 Uncharacterized protei 28.7 1.7E+02 0.0037 22.4 5.0 44 3-50 41-84 (113)
429 PRK13730 conjugal transfer pil 28.6 2.3E+02 0.005 24.4 6.4 20 315-335 152-171 (212)
430 PF10087 DUF2325: Uncharacteri 28.4 1.6E+02 0.0034 21.7 5.0 41 34-76 50-91 (97)
431 TIGR01326 OAH_OAS_sulfhy OAH/O 28.4 4.1E+02 0.0089 25.6 9.2 60 8-69 70-129 (418)
432 KOG0373 Serine/threonine speci 28.3 1.8E+02 0.0039 25.4 5.7 73 39-115 82-163 (306)
433 cd01987 USP_OKCHK USP domain i 27.9 2.6E+02 0.0057 21.0 7.2 34 11-44 1-39 (124)
434 PRK06372 translation initiatio 26.9 3.3E+02 0.0072 24.3 7.5 60 4-67 81-140 (253)
435 cd03052 GST_N_GDAP1 GST_N fami 26.4 2.2E+02 0.0047 19.5 6.1 52 274-331 2-56 (73)
436 TIGR02826 RNR_activ_nrdG3 anae 26.4 89 0.0019 25.3 3.6 46 13-67 64-115 (147)
437 cd03053 GST_N_Phi GST_N family 26.3 1.2E+02 0.0025 20.7 3.8 71 273-359 2-75 (76)
438 KOG1364 Predicted ubiquitin re 25.8 5.6E+02 0.012 24.0 9.5 50 307-358 137-186 (356)
439 PLN02720 complex II 25.8 44 0.00095 26.2 1.5 20 150-169 33-52 (140)
440 PRK07582 cystathionine gamma-l 25.7 2.9E+02 0.0063 26.0 7.5 57 12-70 67-123 (366)
441 cd03034 ArsC_ArsC Arsenate Red 25.5 73 0.0016 24.3 2.8 34 273-313 1-34 (112)
442 PRK06234 methionine gamma-lyas 25.4 3.4E+02 0.0073 25.9 8.0 61 8-70 77-137 (400)
443 cd08757 SAM_PNT_ESE Sterile al 25.2 59 0.0013 22.5 2.0 37 155-191 3-43 (68)
444 COG1393 ArsC Arsenate reductas 25.0 90 0.0019 24.2 3.2 22 273-294 3-24 (117)
445 TIGR00014 arsC arsenate reduct 24.8 76 0.0016 24.3 2.8 33 274-313 2-34 (114)
446 PRK07810 O-succinylhomoserine 24.6 3.9E+02 0.0084 25.6 8.2 60 9-70 84-143 (403)
447 TIGR00411 redox_disulf_1 small 24.5 2.1E+02 0.0046 19.6 5.0 29 36-64 4-32 (82)
448 PF12105 SpoU_methylas_C: SpoU 24.4 16 0.00034 24.4 -1.0 27 154-180 23-49 (57)
449 PF15608 PELOTA_1: PELOTA RNA 24.3 1.3E+02 0.0029 22.6 3.8 24 47-70 19-43 (100)
450 PF00809 Pterin_bind: Pterin b 24.0 66 0.0014 27.8 2.5 39 2-41 86-125 (210)
451 PHA02641 hypothetical protein; 23.5 51 0.0011 26.7 1.6 27 17-43 23-50 (188)
452 PRK05939 hypothetical protein; 23.4 5.8E+02 0.013 24.4 9.1 59 9-70 61-119 (397)
453 PRK06434 cystathionine gamma-l 23.3 4.8E+02 0.01 24.9 8.5 60 9-70 78-137 (384)
454 PRK05968 hypothetical protein; 23.2 5.6E+02 0.012 24.3 9.0 61 8-70 76-136 (389)
455 cd03025 DsbA_FrnE_like DsbA fa 23.1 72 0.0016 26.6 2.6 22 315-337 159-180 (193)
456 PRK05994 O-acetylhomoserine am 23.1 6.9E+02 0.015 24.1 9.9 61 8-70 76-136 (427)
457 cd00293 USP_Like Usp: Universa 23.1 3.1E+02 0.0067 20.1 7.6 35 11-45 1-40 (130)
458 cd06130 DNA_pol_III_epsilon_li 23.1 93 0.002 24.9 3.2 38 6-43 73-112 (156)
459 PF10561 UPF0565: Uncharacteri 22.9 1.1E+02 0.0023 28.2 3.7 53 11-66 195-270 (303)
460 PF02201 SWIB: SWIB/MDM2 domai 22.3 57 0.0012 23.0 1.5 12 160-171 27-38 (76)
461 TIGR01325 O_suc_HS_sulf O-succ 22.3 4.8E+02 0.01 24.6 8.3 60 8-69 67-126 (380)
462 COG2516 Biotin synthase-relate 22.3 59 0.0013 30.0 1.9 33 171-203 274-307 (339)
463 PRK07812 O-acetylhomoserine am 22.0 4.1E+02 0.0088 25.9 7.8 59 8-68 82-140 (436)
464 PF02670 DXP_reductoisom: 1-de 21.4 3.8E+02 0.0081 21.2 6.1 23 22-44 12-34 (129)
465 PF00205 TPP_enzyme_M: Thiamin 21.1 1.6E+02 0.0036 23.0 4.2 83 26-122 6-91 (137)
466 KOG0324 Uncharacterized conser 21.0 79 0.0017 27.2 2.3 46 284-330 87-132 (214)
467 PRK08045 cystathionine gamma-s 21.0 5.9E+02 0.013 24.2 8.6 58 9-68 66-123 (386)
468 TIGR01328 met_gam_lyase methio 20.6 7.4E+02 0.016 23.5 9.8 61 8-70 72-132 (391)
469 TIGR03439 methyl_EasF probable 20.4 3.5E+02 0.0076 25.1 6.7 86 269-360 76-182 (319)
470 PHA02053 hypothetical protein 20.1 1.4E+02 0.003 22.2 3.1 24 3-28 75-99 (115)
471 PRK08247 cystathionine gamma-s 20.1 7E+02 0.015 23.4 8.9 58 9-69 66-123 (366)
No 1
>PLN02309 5'-adenylylsulfate reductase
Probab=100.00 E-value=4e-90 Score=651.28 Aligned_cols=355 Identities=85% Similarity=1.448 Sum_probs=322.5
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 80 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~ 80 (361)
|+|+++.|++++++++|||+||+++||+.+.+++++|+|+|||++|||||+|+++++++||++|+++.|+....+++...
T Consensus 102 l~~a~~~~~~~ia~~~SG~ed~vll~l~~~~~~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~P~~~~~~~~~~~ 181 (457)
T PLN02309 102 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFPDAVEVQALVRN 181 (457)
T ss_pred HHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCCcchHHHHHHh
Confidence 57899999888999999999999999999999999999999999999999999999999999999999998777777888
Q ss_pred cCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHH
Q 018045 81 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~ 160 (361)
+|.+.++..++++||.++|++||+++++++++||||+|++||.+.|+.++++++|+.+++..++.++++|++||++||.+
T Consensus 182 ~g~~~~~~~~~~~Cc~irKVePL~raL~~~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~~~~~~~~lKvnPl~~Wt~~ 261 (457)
T PLN02309 182 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFEGLDGGPGSLVKWNPLANVTGN 261 (457)
T ss_pred cCccccccCChHHhhhhHhHHHHHHHHhhCCEEEEeeccccCccccccCCeeeecccccccccCCCCeeEEcccccCCHH
Confidence 89888877788999999999999999999999999999999943799999999998776555455679999999999999
Q ss_pred HHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCCCccccccccCCCCCCCCCCc
Q 018045 161 DIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 240 (361)
Q Consensus 161 dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 240 (361)
|||.||++|+|||||||++||.||||++||+|+.+|+++|+|||||++..|+|||||..+++... +......+++
T Consensus 262 dVw~Yi~~~~lP~npL~~~GY~SIGC~pCT~pv~~g~~~RaGRw~w~~~~k~ECGlH~~~~~~~~-----~~~~~~~~~~ 336 (457)
T PLN02309 262 EVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEED-----NGAANDNGNA 336 (457)
T ss_pred HHHHHHHHcCCCCCcchhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCcccccCCCCCccccc-----cccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999987655433 3333455667
Q ss_pred ccccccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCchHHHH
Q 018045 241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAK 319 (361)
Q Consensus 241 ~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~ 319 (361)
...+++++..|++|+.++|++++...+.++++||+||||||++|+.|.|.|+++++.+.+.++.|++||++ .+ .+++.
T Consensus 337 ~~~dl~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~-~~la~ 415 (457)
T PLN02309 337 AVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ-KEFAK 415 (457)
T ss_pred ccccccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc-hHHHH
Confidence 77899999999999999999998766789999999999999999999999999999998756999999999 66 88882
Q ss_pred HcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045 320 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 361 (361)
Q Consensus 320 ~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~ 361 (361)
++|+|.++||+++|++|...++.|.++.++.++|+.||++++
T Consensus 416 ~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~~ 457 (457)
T PLN02309 416 QELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSLR 457 (457)
T ss_pred hhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHhC
Confidence 369999999999999988778899876899999999999875
No 2
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=100.00 E-value=9.4e-90 Score=648.72 Aligned_cols=357 Identities=87% Similarity=1.457 Sum_probs=318.3
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 80 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~ 80 (361)
|+|+++.|++++++++|||+||++|||+.+.+++++|+|+|||++|||||+|+++++++||++++++.|+....+++...
T Consensus 107 l~~a~~~f~~~iavasSG~edsvLlhl~~~~~~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~~p~~~~~~~~~~~ 186 (463)
T TIGR00424 107 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMFPDAVEVQALVRS 186 (463)
T ss_pred HHHHHHhcCCCEEEEeccHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCCcchHHHHHHh
Confidence 57899999889999999999999999999999999999999999999999999999999999999999987666777778
Q ss_pred cCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHH
Q 018045 81 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~ 160 (361)
+|.+.++..++++||.++|++||+++++++++||||+|++||+++|+.++++++|+.+++..++.+++++++||++||.+
T Consensus 187 ~G~~~~~~~~~~~CC~irKVePL~raL~~~~awitG~Rr~Qs~~tRa~~~~ve~d~~~~~~~~~~~~~iKvnPLa~Wt~~ 266 (463)
T TIGR00424 187 KGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVANVEGK 266 (463)
T ss_pred cCcccCCcCChHHHhhHHhHHHHHHHHHhCCcEEeeeccccCccccccCCcccccccccccccCCCceEEEeecccCCHH
Confidence 88888877788999999999999999999999999999999944799999999997665444344569999999999999
Q ss_pred HHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCCCccccccccCCCCCCCCCCc
Q 018045 161 DIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 240 (361)
Q Consensus 161 dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 240 (361)
|||.||.+|+|||||||++||.||||++||+|+.+|+++|+|||||++..|+|||||..+++... .+.+....++.
T Consensus 267 dVw~Yi~~~~LP~npL~~~GY~SIGC~pCT~pv~~ged~RaGRW~w~~~~k~ECGlH~~~~~~~~----~~~~~~~~~~~ 342 (463)
T TIGR00424 267 DVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEET----LDGAVNGNGSD 342 (463)
T ss_pred HHHHHHHHcCCCCCchhhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCccccc----cchhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999987544322 22333345777
Q ss_pred ccccccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHH
Q 018045 241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQ 320 (361)
Q Consensus 241 ~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~ 320 (361)
.+.+++++..|.+|+.+||+++++..+.++++||.||||||++|+.|.|.|+++++.+++.++.|++||++.+...++.+
T Consensus 343 ~~~dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~ 422 (463)
T TIGR00424 343 AVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQ 422 (463)
T ss_pred ccccccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHH
Confidence 88999999999999999999998656789999999999999999999999999999998745899999999762344426
Q ss_pred cCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045 321 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 361 (361)
Q Consensus 321 ~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~ 361 (361)
+|+|.++||+++|++|+..++.|.++.++.+.|..||+.++
T Consensus 423 ~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~~ 463 (463)
T TIGR00424 423 ELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLLR 463 (463)
T ss_pred HcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhhC
Confidence 89999999999999997668889866899999999999875
No 3
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=100.00 E-value=2.4e-58 Score=402.60 Aligned_cols=204 Identities=27% Similarity=0.446 Sum_probs=178.0
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcC-CCceEEEccCCCCcHHHHHHHHHHHHHhC--CcEEEEcCChHHHHH
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFG--IRIEYMFPDAVEVQA 76 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g--~~i~~~~p~~~~~~~ 76 (361)
|+|+++.|+++++++|||||||+|| ||+.++. ++++|||+|||.+||||++|+++++++|| +++.++.|... ...
T Consensus 17 l~~~~~~~~~~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~~~~-~~~ 95 (226)
T TIGR02057 17 IAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGCES-EAD 95 (226)
T ss_pred HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCCchh-HHH
Confidence 4788999988899999999999766 9999987 89999999999999999999999999999 55555555543 233
Q ss_pred HHHhcCCCCCCccchhchhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeC
Q 018045 77 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 154 (361)
Q Consensus 77 ~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi 154 (361)
+....|.+.+ ..+...||.++|++|++++++++ ++||+|+|++||. .|+.++.++.+.. ++.++++||
T Consensus 96 ~~~~~G~~~~-~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~-~Ra~~~~~~~d~~--------~~~~kv~Pi 165 (226)
T TIGR02057 96 FEAKYGKLLW-QKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGS-ARANLPVIEIDEQ--------NGILKVNPL 165 (226)
T ss_pred HHHhcCCCcc-ccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCc-cccCCccccccCC--------CCeEEEeeh
Confidence 4445565433 44678899999999999999974 5899999999996 9999999887642 468999999
Q ss_pred ccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCC
Q 018045 155 ANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 217 (361)
Q Consensus 155 ~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~ 217 (361)
++||..|||.||.+++|||||||++||+||||++||.|+.+|+++|+|||+ +..|+|||||
T Consensus 166 ~~Wt~~dVw~Yi~~~~lP~npLY~~GY~siGc~~cT~~v~~~~~~R~gRw~--~~~~~eCglh 226 (226)
T TIGR02057 166 IDWTFEQVYQYLDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK--GKLKTECGIH 226 (226)
T ss_pred hhCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCcCCCCCCCCCccCccCC--CCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999985 5568999998
No 4
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=100.00 E-value=1.7e-56 Score=390.80 Aligned_cols=205 Identities=33% Similarity=0.559 Sum_probs=181.5
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR 79 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~ 79 (361)
|++++++|+++++|+|||||||+|| ||+.+..++++|+|+|||.+||||++|+++++++||+++++++|.... .....
T Consensus 5 l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~~~~~-~~~~~ 83 (212)
T TIGR00434 5 IAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPDLSL-AEQAA 83 (212)
T ss_pred HHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCchhH-HHHHH
Confidence 5789999988999999999999877 999999999999999999999999999999999999999999987553 33344
Q ss_pred hcCCCCCCccchhchhhccccHHHHHHHccCC--EEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045 80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 157 (361)
Q Consensus 80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W 157 (361)
..|... +..++++||.++|+.|+++++++.. +|++|+|++||+ +|+++...+.+.. .+.++++||++|
T Consensus 84 ~~g~~~-~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~-~R~~~~~~~~~~~--------~~~~~v~PI~dW 153 (212)
T TIGR00434 84 KYGDKL-WEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGP-SRANLSILNIDEK--------FGILKVLPLIDW 153 (212)
T ss_pred hcCCCc-cccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCc-cccCCceeeecCC--------CCcEEEeehhhC
Confidence 555332 3446789999999999999999765 999999999997 9999887765532 367899999999
Q ss_pred cHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCC
Q 018045 158 KGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK 218 (361)
Q Consensus 158 ~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~ 218 (361)
++.|||+||.+++|||||||++||+|+||++||.|+.+|+++|+|||+ +..|+|||||.
T Consensus 154 t~~dVw~Yi~~~~lp~npLY~~Gy~siGc~~ct~~~~~~~~~r~gr~~--~~~~~ecg~~~ 212 (212)
T TIGR00434 154 TWKDVYQYIDAHNLPYNPLHDQGYPSIGDYHSTRPVKEGEDERAGRWK--GKAKTECGLHE 212 (212)
T ss_pred CHHHHHHHHHHcCCCCCchhhcCCCCcCCCCCCCCCCCCCCccCccCC--CCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999984 66789999994
No 5
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=100.00 E-value=1.4e-56 Score=397.35 Aligned_cols=207 Identities=46% Similarity=0.850 Sum_probs=183.3
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR 79 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~ 79 (361)
|++++++|+++++|+|||||||++| ||+.+.+++++++|+|||.+||||++|+++++++||+++++++|..........
T Consensus 32 i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~~~~~~~~~ 111 (241)
T PRK02090 32 LAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPDASAAEQEAR 111 (241)
T ss_pred HHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHH
Confidence 5789999998899999999999877 999999999999999999999999999999999999999999998655444433
Q ss_pred hcCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcH
Q 018045 80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG 159 (361)
Q Consensus 80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~ 159 (361)
..+.+.....+.++||..+|+.||++++++.++|++|+|++||. .|+.++..+.+. +..+++||++|++
T Consensus 112 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~itG~R~~es~-~R~~~~~~~~~~----------~~~rv~Pi~~Wt~ 180 (241)
T PRK02090 112 YGGLWEQSVEDRDECCRIRKVEPLNRALAGLDAWITGLRREQSG-TRANLPVLEIDG----------GRFKINPLADWTN 180 (241)
T ss_pred cCCCccccccCHHHHHHHHhhHHHHHHHhcCCCeEEEechhhCc-hhccCceeeecC----------CeEEEeehhhCCH
Confidence 33443322256789999999999999999888899999999996 999888776542 5789999999999
Q ss_pred HHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCC
Q 018045 160 NDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN 220 (361)
Q Consensus 160 ~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~~ 220 (361)
+|||.|+..++||+||||++||+|+||++||.|+.+|+++|+|||| +..|+|||||..+
T Consensus 181 ~dV~~Yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~gr~~--~~~~~ecg~~~~~ 239 (241)
T PRK02090 181 EDVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGRWW--GGLKKECGLHEGN 239 (241)
T ss_pred HHHHHHHHHcCCCCChHHHcCCCCcCCCCCCCCCCCCCCccccCCC--CCCCccCCCCCCC
Confidence 9999999999999999999999999999999999999999999997 5568999999754
No 6
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-57 Score=368.47 Aligned_cols=213 Identities=60% Similarity=0.932 Sum_probs=202.6
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhC-CcEEEEcCChHHHHHHHH
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-IRIEYMFPDAVEVQALVR 79 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g-~~i~~~~p~~~~~~~~~~ 79 (361)
|.|++.+|+..+.++|||..|-++++++.+.+.+++++|+|||.+||||+.+.+.+.++|| +.|+++.|+.-..+..++
T Consensus 38 m~~al~tf~~~~q~a~~G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~VekkY~~i~I~~~~pd~~e~ea~~~ 117 (261)
T KOG0189|consen 38 MDWALETFPNLFQTAASGLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKKYGNIRIHVYFPDAVEVEALFA 117 (261)
T ss_pred HHHHHHHhhhHHHHHhccccchHHHHHHHHcCCCceeEEeeccccChHHHHHHHHHHHhcCceEEEEEcchhHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999998 899999999988888999
Q ss_pred hcCCCCCCccchhchhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045 80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 157 (361)
Q Consensus 80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W 157 (361)
.+|...+|.++...||+++|++|++|++++. .+|+||.|+++| +.|..+++++.|+-+ +++++|||++|
T Consensus 118 ~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~-gtRselpiVqvD~~f--------ellK~NPlaN~ 188 (261)
T KOG0189|consen 118 SKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQG-GTRSELPIVQVDPVF--------ELLKINPLANW 188 (261)
T ss_pred hccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccCC-CcccccceEEecCcc--------ceeeecccccc
Confidence 9999999999999999999999999999988 699999999999 699999999999765 58999999999
Q ss_pred cHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCCCccc
Q 018045 158 KGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQE 224 (361)
Q Consensus 158 ~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~~i~~~ 224 (361)
+..|||.||..+++|||.|.++||+||||++||+|+++|+++|+|||||+ +++|||||..+++..
T Consensus 189 ~~~dV~nyi~t~nVP~NeL~~~GY~SIG~~~~TqpV~~Ge~ERaGRW~~~--~~tECGlHkg~~s~~ 253 (261)
T KOG0189|consen 189 EFNDVWNYIRTNNVPYNELLAAGYRSIGDEHSTQPVLEGEDERAGRWWGE--KKTECGLHKGNQSKF 253 (261)
T ss_pred cHHHHHHHHHhcCCcHHHHHhcCCeeccCccccCcCCCCcccccccccch--hchhccccCcchhhh
Confidence 99999999999999999999999999999999999999999999999998 779999998876653
No 7
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=100.00 E-value=2.7e-54 Score=368.83 Aligned_cols=189 Identities=50% Similarity=0.979 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhchhhcc
Q 018045 19 AEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVR 98 (361)
Q Consensus 19 GKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~cc~~~ 98 (361)
..|+|+|||+.++.++++|+|+|||++||||++|+++++++||++++++.|......+.....|.+.++...+++||..+
T Consensus 3 ~~s~Vll~L~~~~~~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~cc~~~ 82 (191)
T TIGR02055 3 AEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPHECCGIR 82 (191)
T ss_pred hHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchHHHHHHH
Confidence 34445669999999999999999999999999999999999999999998876556666677888776655589999999
Q ss_pred ccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCcccc
Q 018045 99 KVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHS 178 (361)
Q Consensus 99 K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~ 178 (361)
|++|+++++++.++||+|+|++||. .|+.++.++.+..+ +.++++||++||..|||+||++++||+||||+
T Consensus 83 K~~Pl~~~l~~~~~~i~G~Rr~Es~-~R~~~~~~~~~~~~--------~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~npLY~ 153 (191)
T TIGR02055 83 KVEPLKRALAGVSAWITGLRRDQSP-TRAQAPFLEIDEAF--------GLVKINPLADWTSEDVWEYIADNELPYNPLHD 153 (191)
T ss_pred hHHHHHHHHhcCCEEEEEeccccCc-hhcCCceeeecCCC--------CeEEEEecccCCHHHHHHHHHHcCCCCChHHH
Confidence 9999999999999999999999996 99999988877532 47899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccC
Q 018045 179 QGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGL 216 (361)
Q Consensus 179 ~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~ 216 (361)
+||+|+||++||.|+.+|+++|+|||||.+..|+||||
T Consensus 154 ~Gy~siGC~~Ct~~~~~~~~~r~gRw~~~~~~~~ecg~ 191 (191)
T TIGR02055 154 RGYPSIGCEPCTRPVAPGEDPRAGRWWWEEAAKKECGL 191 (191)
T ss_pred cCCCCCCCcCCCCCCCCCCCccCcCcCCCCCCCCCCCC
Confidence 99999999999999999999999999999888999997
No 8
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.7e-53 Score=378.74 Aligned_cols=212 Identities=40% Similarity=0.722 Sum_probs=186.8
Q ss_pred HHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045 2 DRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 80 (361)
Q Consensus 2 ~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~ 80 (361)
+|+++++++.++++|||||||+|+ ||+.+...+++++|+|||++||||++|+++++++||++++++.|+....+. ..
T Consensus 32 ~~~~~~~~~~~~~~~S~Gkds~V~l~L~~k~~~~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~~~~~~~~~--~~ 109 (261)
T COG0175 32 RWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRPDDEVAEG--EK 109 (261)
T ss_pred HHHHHHcCCCeEEEecCchhHHHHHHHHHHhcCCCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEecCccchhhh--hh
Confidence 568889987889999999999877 999999989999999999999999999999999999999999998765444 33
Q ss_pred cCCCCCCccchhchhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCc
Q 018045 81 KGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVK 158 (361)
Q Consensus 81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~ 158 (361)
++...+..+..+|||.++|++||+++++++ ++|++|+|++||. .|+++++++.+..+ ++.++++||++||
T Consensus 110 ~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~-~Rak~~~~~~~~~~-------~~~~rv~Pl~~Wt 181 (261)
T COG0175 110 YGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESP-TRAKLPVVSFDSEF-------GESIRVNPLADWT 181 (261)
T ss_pred cccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEeccccccc-ccccCceeccccCc-------CCeEEEcchhcCC
Confidence 333333323456899999999999999987 7999999999996 99999999988643 3689999999999
Q ss_pred HHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCC-CCCCcCCCCCCCCCCcccccCCCCCCcc
Q 018045 159 GNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP-GQHEREGRWWWEDAKAKECGLHKGNIKQ 223 (361)
Q Consensus 159 ~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~-~~~~~~gr~~~~~~~~~~~g~~~~~i~~ 223 (361)
..|||.||..++|||||||++||+|+||++||.++.+ ++++|+||||+....++|||+|......
T Consensus 182 ~~dVw~Yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~~~~~~r~~rw~~~~~~~~E~g~~~~~~~~ 247 (261)
T COG0175 182 ELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKTECGLHRADDPD 247 (261)
T ss_pred HHHHHHHHHHhCCCCCcHHhccCCccCcccCCCcCccccccHHHHhhccccchhhhhccccccccc
Confidence 9999999999999999999999999999999999998 8999999999887779999999765433
No 9
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=2.3e-44 Score=322.60 Aligned_cols=170 Identities=21% Similarity=0.355 Sum_probs=142.0
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ 75 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~ 75 (361)
|++++++|+ +++++|||||||+|| ||+.++ .++++++|+|||++||||++|+++++++||++++++.|... +
T Consensus 30 lrea~~~f~-~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~~~~-~- 106 (312)
T PRK12563 30 LREVVAECS-KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHNPDG-I- 106 (312)
T ss_pred HHHHHHhcC-CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecChHH-H-
Confidence 578888884 789999999999877 999986 67899999999999999999999999999999999887532 1
Q ss_pred HHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCcee-------cCCCCc-------
Q 018045 76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFE------- 139 (361)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~~~~~~------- 139 (361)
..|... +..+...||..+|++||++++. ++++||+|+|++|+. .|++..+++ ||+++.
T Consensus 107 ----~~G~~~-~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~-sRak~~ifs~r~~~~~wD~~~qrPelw~~ 180 (312)
T PRK12563 107 ----ARGIVP-FRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEK-SRAKERIFSFRSAFHRWDPKAQRPELWSL 180 (312)
T ss_pred ----HhCCCc-ccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhh-hhccCceecccccccccCccccChhhhhh
Confidence 124332 3456789999999999999997 678999999999996 999998887 554321
Q ss_pred --CCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCccccCC
Q 018045 140 --GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180 (361)
Q Consensus 140 --~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g 180 (361)
.+ ...+..++++||++||+.|||.||..++|||||||+.+
T Consensus 181 ~n~~-~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~ 222 (312)
T PRK12563 181 YNAR-LRRGESLRVFPLSNWTELDVWQYIAREKIPLVPLYFAK 222 (312)
T ss_pred cccc-ccCCceEEEecchhCCHHHHHHHHHHcCCCCCcchhcC
Confidence 11 01235899999999999999999999999999999875
No 10
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=100.00 E-value=3e-43 Score=314.80 Aligned_cols=186 Identities=24% Similarity=0.409 Sum_probs=154.8
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ 75 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~ 75 (361)
|++++++|+ +++++|||||||+|| ||+.++ +++++++|+|||++||||++|+++++++||+++++++++..
T Consensus 12 lRe~~~~f~-~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~v~~~~~~--- 87 (294)
T TIGR02039 12 IREVAAEFE-RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLIVHSNEEG--- 87 (294)
T ss_pred HHHHHHhcC-CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEEechhh---
Confidence 578889995 678999999999877 999986 56799999999999999999999999999999999988632
Q ss_pred HHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCcee-------cCCCCc-------
Q 018045 76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFE------- 139 (361)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~~~~~~------- 139 (361)
...|...+ ..+...||..+|+.||++++. ++++|++|+|+||+. .|++..+++ ||++..
T Consensus 88 ---~~~g~~~~-~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~-sRake~i~s~r~~~~~wD~~~q~Pelw~~ 162 (294)
T TIGR02039 88 ---IADGINPF-TEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEK-SRAKERIFSFRNAFHQWDPKKQRPELWNL 162 (294)
T ss_pred ---hhcCcccc-ccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhh-HhhcCceeeccccccccCccccCchhhhc
Confidence 23454433 345677999999999999997 678999999999995 999877764 443311
Q ss_pred --CCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCccccC---------------------------------CCCCC
Q 018045 140 --GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQ---------------------------------GYISI 184 (361)
Q Consensus 140 --~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~---------------------------------g~~~~ 184 (361)
++. ..+..++++||++||+.|||.||..++|||||||.. +|+++
T Consensus 163 ~~~~~-~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~r~rt~ 241 (294)
T TIGR02039 163 YNGRI-SKGESVRVFPLSNWTELDIWRYIAAENIPIVPLYFAAKRPVVQRDGMLIMVDDVRMPLAPGEVVKERMVRFRTL 241 (294)
T ss_pred ccccc-ccCCcEEEechhhCCHHHHHHHHHHcCCCCCcCeecCccceeeccCeEEecCccccCCCCCCcccccceeeccc
Confidence 111 123578999999999999999999999999999953 89999
Q ss_pred CCCCCCCCCCCC
Q 018045 185 GCEPCTRPVLPG 196 (361)
Q Consensus 185 GC~~Ct~~~~~~ 196 (361)
||++||.++.+.
T Consensus 242 g~~~~t~~~~s~ 253 (294)
T TIGR02039 242 GCYPLTGAIESD 253 (294)
T ss_pred CcccCCCcccCC
Confidence 999999999865
No 11
>PRK08557 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=323.36 Aligned_cols=181 Identities=24% Similarity=0.381 Sum_probs=154.6
Q ss_pred CHHHHhHhC---CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH
Q 018045 1 MDRALEKFG---NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA 76 (361)
Q Consensus 1 i~~~~~~~~---~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~ 76 (361)
|++++++|+ ..+++||||||||+++ +|+.+..++++++|+|||.+||||++|+++++++||++++++.+. .+..
T Consensus 170 i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~--~f~~ 247 (417)
T PRK08557 170 LKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD--NFWE 247 (417)
T ss_pred HHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech--HHHH
Confidence 467778885 3588999999999877 888888889999999999999999999999999999999998765 3444
Q ss_pred HHHhcCCCCCCccchhchhhccccHHHHHHHcc---C--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEE
Q 018045 77 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG---L--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKW 151 (361)
Q Consensus 77 ~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~---~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (361)
.+...|.| ..+.+|||..+|+.|+++++++ . .++++|+|++||. .|++++..+.+.. .++.+++
T Consensus 248 ~~~~~G~P---s~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~-~Ra~~~~~~~~~~-------~~~~~~i 316 (417)
T PRK08557 248 NLEKEGIP---TKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESF-TRANLDYERKSGF-------IDFQTNV 316 (417)
T ss_pred HHhhccCC---cccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccch-hhccCceeccccc-------ccCceeE
Confidence 45566654 4578999999999999999975 2 4899999999996 9999876544321 1346789
Q ss_pred eeCccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCC
Q 018045 152 NPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL 194 (361)
Q Consensus 152 ~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~ 194 (361)
+||++||..|||.||..+++|+||||++||+|+||++||.+..
T Consensus 317 ~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~ 359 (417)
T PRK08557 317 FPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLCPSALN 359 (417)
T ss_pred EecccCCHHHHHHHHHHcCCCCCchhhCCCCCCCccCCCCccH
Confidence 9999999999999999999999999999999999999998764
No 12
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=100.00 E-value=8.9e-43 Score=295.77 Aligned_cols=170 Identities=37% Similarity=0.716 Sum_probs=127.6
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 89 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~ 89 (361)
+++|+|||||||++| ||+.+...+++++|+|||.+||+|++|+++++++||++++++.+.......... .+. +..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~---~~~ 76 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPPETFEQRFIL-YGW---PSK 76 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETTSHHHHHHHH-HHH---STT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccccchhhcccc-ccc---cch
Confidence 589999999999877 999998888999999999999999999999999999999998888664433332 221 111
Q ss_pred chh-chhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHHHH
Q 018045 90 GHQ-ECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFL 166 (361)
Q Consensus 90 ~~~-~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi 166 (361)
..+ +||..+|+.|+++++++. .++++|+|++||. +|++....+.+..+ ++.++++||++|+++|||+||
T Consensus 77 ~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~-~R~~~~~~~~~~~~-------~~~~~~~Pi~~wt~~dV~~yi 148 (174)
T PF01507_consen 77 LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESP-RRAKLPMFEFDEDN-------PKIIRVYPIADWTEEDVWDYI 148 (174)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTT-GCCGSSSEEEETTT-------TSEEEE-TTTT--HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh-hhhhchhhhccccc-------CCEEEEEehhhCCHHHHHHHH
Confidence 222 699999999999999866 4999999999996 99988887776543 347899999999999999999
Q ss_pred HhCCCCCCccccCCCCCCCCCCCCCC
Q 018045 167 RTMDVPINSLHSQGYISIGCEPCTRP 192 (361)
Q Consensus 167 ~~~~lp~~~lY~~g~~~~GC~~Ct~~ 192 (361)
+.++||+||||++||.|+||++||.|
T Consensus 149 ~~~~l~~~~lY~~g~~r~GC~~C~~~ 174 (174)
T PF01507_consen 149 KANGLPYNPLYDKGYSRVGCWPCTRP 174 (174)
T ss_dssp HHHT--B-HHHHCT-SS--BTTTB--
T ss_pred HHhcCCCcHHHHCcCCCcCCccCCCC
Confidence 99999999999999999999999975
No 13
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=7.5e-42 Score=308.80 Aligned_cols=186 Identities=25% Similarity=0.478 Sum_probs=153.7
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ 75 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~ 75 (361)
|++++++| ++++|+|||||||++| ||+.+. +.+++++|+|||.+||||++|+++++++||++++++.+...
T Consensus 20 Lrea~~~f-~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~~~--- 95 (301)
T PRK05253 20 LREVAAEF-ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNPEG--- 95 (301)
T ss_pred HHHHHHhC-CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeChHH---
Confidence 57888988 5999999999999877 999885 45789999999999999999999999999999999876521
Q ss_pred HHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCcee-------cCCC---------
Q 018045 76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPV--------- 137 (361)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~~~~--------- 137 (361)
...|... +..+.++||..+|+.||+++++ ++++|++|+|+||+. .|++..+++ |+++
T Consensus 96 ---i~~g~~~-~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~-~Ra~e~~fs~r~~~~~wd~~~q~Pelw~~ 170 (301)
T PRK05253 96 ---IARGINP-FRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEK-SRAKERIFSFRDEFGQWDPKNQRPELWNL 170 (301)
T ss_pred ---HhcCCCC-CCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhh-hhccCccccccccccccCccccChhhhhh
Confidence 1234433 3345689999999999999997 568999999999995 999877664 3332
Q ss_pred CcCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCcccc---------CC-----------------------CCCCC
Q 018045 138 FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHS---------QG-----------------------YISIG 185 (361)
Q Consensus 138 ~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~---------~g-----------------------~~~~G 185 (361)
|+++. ..+..++++||++|++.|||+||..++|||||||. .| |+++|
T Consensus 171 ~~~~~-~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~r~~g 249 (301)
T PRK05253 171 YNGRI-NKGEHIRVFPLSNWTELDIWQYIERENIPIVPLYFAHERPVVERDGMLIMVDDRMPLRPGEVVEERMVRFRTLG 249 (301)
T ss_pred ccccc-cCCCeEEEeehhhCCHHHHHHHHHHcCCCCCcccccCCCceEeECCeEEecccccCCCCCCcceeeeeeeeccC
Confidence 11111 12358999999999999999999999999999998 44 99999
Q ss_pred CCCCCCCCCCC
Q 018045 186 CEPCTRPVLPG 196 (361)
Q Consensus 186 C~~Ct~~~~~~ 196 (361)
|++||.++.+.
T Consensus 250 ~~~~t~~~~s~ 260 (301)
T PRK05253 250 CYPCTGAVESE 260 (301)
T ss_pred CccCCCcccCC
Confidence 99999998765
No 14
>PRK13794 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=326.53 Aligned_cols=180 Identities=28% Similarity=0.403 Sum_probs=156.5
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHH
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALV 78 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~ 78 (361)
|+++++.++++++|||||||||+++ +|+.+. +.++.++|+|||.+||||++|+++++++||++++++.++ .++...
T Consensus 239 i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~--~f~~~~ 316 (479)
T PRK13794 239 IRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE--EFWEKL 316 (479)
T ss_pred HHHHHHhcCCCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEchH--HHHHHH
Confidence 4667777888999999999999876 888887 788999999999999999999999999999999998876 344445
Q ss_pred HhcCCCCCCccchhchhhccccHHHHHHHcc----CCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeC
Q 018045 79 RSKGLFSFYEDGHQECCRVRKVRPLRRALKG----LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 154 (361)
Q Consensus 79 ~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~----~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi 154 (361)
...|. |..+.+|||..+|+.|+++++++ ..++++|+|++||. .|+..+..+.+... ++.++++||
T Consensus 317 ~~~G~---P~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~-~Ra~~~~~~~~~~~-------~~~~~~~PI 385 (479)
T PRK13794 317 EEYGP---PARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESF-NRSKKPRIWRNPYI-------KKQILAAPI 385 (479)
T ss_pred HhcCC---CCCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccH-hHhcCcccccccCc-------CCcEEEech
Confidence 55655 44578999999999999999975 35899999999996 99999877655322 467899999
Q ss_pred ccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCC
Q 018045 155 ANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 193 (361)
Q Consensus 155 ~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~ 193 (361)
++||..|||.||..++|||||||++||.|+||++||...
T Consensus 386 ~~Wt~~dVw~Yi~~~~lp~npLY~~G~~riGC~~Cp~~~ 424 (479)
T PRK13794 386 LHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMCPAME 424 (479)
T ss_pred HhCCHHHHHHHHHHcCCCCChHHHCCCCCCccccCcCcC
Confidence 999999999999999999999999999999999999764
No 15
>PRK13795 hypothetical protein; Provisional
Probab=100.00 E-value=1e-38 Score=317.52 Aligned_cols=181 Identities=27% Similarity=0.422 Sum_probs=156.1
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR 79 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~ 79 (361)
|++++++++++++|||||||||+++ ||+.+...++.++|+|||.+||||++|+++++++||++++++.+... +.....
T Consensus 235 Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~~-f~~~~~ 313 (636)
T PRK13795 235 IRGVAEKYNLPVSVSFSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGDA-FWRAVE 313 (636)
T ss_pred HHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccHh-HHHhhh
Confidence 4667777777899999999999877 99999888899999999999999999999999999999999988633 333344
Q ss_pred hcCCCCCCccchhchhhccccHHHHHHHccC----CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045 80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGL----RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA 155 (361)
Q Consensus 80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~----~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~ 155 (361)
..| +|..+.+|||..+|+.|++++++.. .++++|+|++||. .|++.+..+.+.. .++.++++||+
T Consensus 314 ~~g---~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~-~R~~~~~~~~~~~-------~~~~~~~~PI~ 382 (636)
T PRK13795 314 KFG---PPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESF-SRAKSPRVWRNPW-------VPNQIGASPIQ 382 (636)
T ss_pred ccC---CCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchH-HHhhCcccccCCC-------CCCcEEEechH
Confidence 444 3456789999999999999999854 3789999999996 9999887665432 24678999999
Q ss_pred cCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCC
Q 018045 156 NVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 193 (361)
Q Consensus 156 ~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~ 193 (361)
+||..|||.||..++|||||||++||.|+||++||.+.
T Consensus 383 ~Wt~~dVw~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~ 420 (636)
T PRK13795 383 DWTALEVWLYIFWRKLPYNPLYERGFDRIGCWLCPSSS 420 (636)
T ss_pred hCCHHHHHHHHHHhCCCCChHHHCCCCCCCccCCCCCC
Confidence 99999999999999999999999999999999999865
No 16
>PRK08576 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=277.58 Aligned_cols=176 Identities=21% Similarity=0.310 Sum_probs=142.3
Q ss_pred HHhHhC-CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 018045 4 ALEKFG-NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK 81 (361)
Q Consensus 4 ~~~~~~-~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~ 81 (361)
++++++ .+++|+|||||||+++ +|+.+...++.++|+|||.++|+|+++++++++++|+++++...+ ......+.
T Consensus 228 ~Lr~~~~~rVvVafSGGKDStvLL~La~k~~~~V~aV~iDTG~e~pet~e~~~~lae~LGI~lii~~v~---~~~~~~~~ 304 (438)
T PRK08576 228 FLRKFEEWTVIVPWSGGKDSTAALLLAKKAFGDVTAVYVDTGYEMPLTDEYVEKVAEKLGVDLIRAGVD---VPMPIEKY 304 (438)
T ss_pred HHHHcCCCCEEEEEcChHHHHHHHHHHHHhCCCCEEEEeCCCCCChHHHHHHHHHHHHcCCCEEEcccC---HHHHhhhc
Confidence 456665 4899999999999876 888887667999999999999999999999999999999772211 22223344
Q ss_pred CCCCCCccchhchhhccccHHHHHHHcc--CCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcH
Q 018045 82 GLFSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG 159 (361)
Q Consensus 82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~~--~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~ 159 (361)
+.+. ....||..+|+.|+++++++ .+++++|+|++||. .|...+....+.. +.++..+++||++|++
T Consensus 305 g~p~----~~~rcCt~lK~~pL~raake~g~~~iatG~R~dES~-~R~~~p~v~~~~~------~~~~v~rI~PL~~Wte 373 (438)
T PRK08576 305 GMPT----HSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGESA-RRRLRPPVVERKT------NFGKILVVMPIKFWSG 373 (438)
T ss_pred CCCC----cccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHHhH-HhhcCCccccccc------CCCCeEEEeChhhCCH
Confidence 4322 23457778999999999985 46899999999995 8887765543321 1246889999999999
Q ss_pred HHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCC
Q 018045 160 NDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 193 (361)
Q Consensus 160 ~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~ 193 (361)
.|||.|+..++||+||||++||.|+||++||...
T Consensus 374 ~DV~~YI~~~gLP~npLY~~Gy~rIGC~~Cp~~~ 407 (438)
T PRK08576 374 AMVQLYILMNGLELNPLYYKGFYRLGCYICPSLR 407 (438)
T ss_pred HHHHHHHHHhCCCCCcHHhCCCCccCCcCCcchH
Confidence 9999999999999999999999999999999754
No 17
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=100.00 E-value=2.3e-34 Score=243.45 Aligned_cols=167 Identities=39% Similarity=0.680 Sum_probs=137.8
Q ss_pred cEEEEecchHHHHHH-HHHHHcCC---CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGR---PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 86 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~---~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~ 86 (361)
+++|+|||||||++| ||+.+... ++.++|+|||.++|+|+++++++++.+|++++++.+................+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGFPL 80 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhhhccCC
Confidence 589999999999877 89888766 89999999999999999999999999999999988775432211111112234
Q ss_pred CccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHH
Q 018045 87 YEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 164 (361)
Q Consensus 87 ~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~ 164 (361)
+....++||..+|..|+.++++ +.+++++|+|+||+. .|..+....... ..++..+++||++|+.+|||+
T Consensus 81 ~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~-~r~~~~~~~~~~-------~~~~~~~~~Pl~~w~~~di~~ 152 (173)
T cd01713 81 PSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESA-RRALLPVVWTDD-------GKGGILKVNPLLDWTYEDVWA 152 (173)
T ss_pred ccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccch-hhhhCccccccC-------CCCCcEEEcchhcCCHHHHHH
Confidence 5567899999999999999998 567999999999995 888766541111 124678999999999999999
Q ss_pred HHHhCCCCCCccccCCCCCCC
Q 018045 165 FLRTMDVPINSLHSQGYISIG 185 (361)
Q Consensus 165 yi~~~~lp~~~lY~~g~~~~G 185 (361)
|++.++||+||||++||+|+|
T Consensus 153 ~~~~~~l~~~~ly~~g~~~~g 173 (173)
T cd01713 153 YLARHGLPYNPLYDQGYRSIG 173 (173)
T ss_pred HHHHcCCCCCHHHHcCCCCCC
Confidence 999999999999999999987
No 18
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=99.98 E-value=2.6e-32 Score=257.09 Aligned_cols=189 Identities=17% Similarity=0.248 Sum_probs=137.7
Q ss_pred HHHHhHhCCcEEEEecchHHHHHH-HHHHHc---------CCCceEEEccCCCCcHHHHHHHHHHH-------HHhCCcE
Q 018045 2 DRALEKFGNDIAIAFSGAEDVALI-EYAHLT---------GRPFRVFSLDTGRLNPETYRFFDEVE-------KHFGIRI 64 (361)
Q Consensus 2 ~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~---------~~~i~v~~~dtg~~~pet~~~v~~~~-------~~~g~~i 64 (361)
++++...+.+++|+|||||||+++ +|+.++ .+.+.|+|.|||.|||+|++|++++. +++|+++
T Consensus 6 ~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi 85 (447)
T TIGR03183 6 QELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPI 85 (447)
T ss_pred HHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 344544445689999999999876 776653 14688999999999999999997643 5667666
Q ss_pred E--EEcCCh-HHHHHHHHhcCCCCCCccchhchhhccccHHHHHHHcc------CCEEEEeeeccCCccCccCCCc-eec
Q 018045 65 E--YMFPDA-VEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG------LRAWITGQRKDQSPGTRSEIPV-VQV 134 (361)
Q Consensus 65 ~--~~~p~~-~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~------~~~~i~G~R~~Es~~~R~~~~~-~~~ 134 (361)
. ++.|.. ..++..+.++|.|. |....+|||..+|+.|+++++++ ..++++|+|++||. .|++... .+.
T Consensus 86 ~~~~v~P~~~~~Fwv~liGrG~P~-P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~-~RA~~m~k~e~ 163 (447)
T TIGR03183 86 EPHRLTPEIKDTFWVNLIGKGYPA-PRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQ-ARAAVMEKHES 163 (447)
T ss_pred EEEecCCCcchHHHHHHhcCCCCC-CCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHH-HHHhhhhhhcc
Confidence 4 566763 33444445566543 45678999999999999999874 25899999999996 8988521 111
Q ss_pred CC--CCcCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCC-------cccc------------------CCCCCCCCC
Q 018045 135 DP--VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPIN-------SLHS------------------QGYISIGCE 187 (361)
Q Consensus 135 ~~--~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~-------~lY~------------------~g~~~~GC~ 187 (361)
.. ....+....++.+.++||.+|+.+|||.||..+++|+. .||. +|..|.|||
T Consensus 164 ~~~r~~l~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g~~~~~l~~lY~~a~~~~eCp~v~d~~~~sCG~sRfGCw 243 (447)
T TIGR03183 164 GSLRDRLSRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWGIDNKDLFGMYQGATADGECPLVVDTSTPSCGDSRFGCW 243 (447)
T ss_pred ccccccccccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhcccCCCCceeeCCCCCCCCCCCCCee
Confidence 10 00112223457889999999999999999999988773 3453 388999999
Q ss_pred CCCCC
Q 018045 188 PCTRP 192 (361)
Q Consensus 188 ~Ct~~ 192 (361)
.||..
T Consensus 244 ~Ct~v 248 (447)
T TIGR03183 244 VCTMV 248 (447)
T ss_pred eCcCc
Confidence 99964
No 19
>PRK06850 hypothetical protein; Provisional
Probab=99.97 E-value=8.9e-32 Score=255.89 Aligned_cols=183 Identities=20% Similarity=0.305 Sum_probs=136.7
Q ss_pred CCcEEEEecchHHHHHH-HHHHHc---------CCCceEEEccCCCCcHHHHHHHHHHH-------HHhCCcEE--EEcC
Q 018045 9 GNDIAIAFSGAEDVALI-EYAHLT---------GRPFRVFSLDTGRLNPETYRFFDEVE-------KHFGIRIE--YMFP 69 (361)
Q Consensus 9 ~~~i~vs~SGGKDS~~l-~l~~~~---------~~~i~v~~~dtg~~~pet~~~v~~~~-------~~~g~~i~--~~~p 69 (361)
+..++|+|||||||+++ +|+.+. .+++.|+|.|||.|+|+|++|++++. +++|+++. ++.|
T Consensus 34 ~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~glpi~~~~v~P 113 (507)
T PRK06850 34 NRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQGLPITPHKLTP 113 (507)
T ss_pred CCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHcCCceEEEeeCC
Confidence 34689999999999866 776552 12578999999999999999987764 46688774 4667
Q ss_pred Ch-HHHHHHHHhcCCCCCCccchhchhhccccHHHHHHHcc------CCEEEEeeeccCCccCccCC-CceecCCCCcCC
Q 018045 70 DA-VEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG------LRAWITGQRKDQSPGTRSEI-PVVQVDPVFEGL 141 (361)
Q Consensus 70 ~~-~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~------~~~~i~G~R~~Es~~~R~~~-~~~~~~~~~~~~ 141 (361)
.. ..++..+.++|.|. |....+|||..+|+.|+++++++ ..++++|+|++||. .|++. ...+.+.....+
T Consensus 114 ~~~~sFwv~liGrG~P~-Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~-~RA~~m~~~~~~~~rl~~ 191 (507)
T PRK06850 114 KINDTFWVNLIGKGYPA-PRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA-ARAQVMAKHEIEGSRLSR 191 (507)
T ss_pred CcchhHHHHHhcCCCCC-CCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH-HHHhhhhhhcccCcceee
Confidence 64 33444455666653 55688999999999999999963 24899999999996 88875 333332111122
Q ss_pred cCCCCCeEEEeeCccCcHHHHHHHHHhCCCCC-------Ccccc------------------CCCCCCCCCCCCCCC
Q 018045 142 EGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI-------NSLHS------------------QGYISIGCEPCTRPV 193 (361)
Q Consensus 142 ~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~-------~~lY~------------------~g~~~~GC~~Ct~~~ 193 (361)
+...++.+.++||.+|+.+|||.||..+++|+ ..||. +|-.|.|||.||...
T Consensus 192 ~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g~~~~~L~~lY~~a~~~~eCp~v~d~~~~sCG~sRfGCwvCt~v~ 268 (507)
T PRK06850 192 HTTLPNAFVYTPIEDWSNDDVWKYLLQWENPWGGSNRDLFTLYRGASADGECPLVVDTSTPSCGNSRFGCWVCTVVT 268 (507)
T ss_pred ccCCCCcEEEeChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhccCCCCCCeeeCCCCCCCCCCCCCcccccccc
Confidence 22335778999999999999999999998887 45564 366899999999643
No 20
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=99.90 E-value=2.5e-24 Score=189.41 Aligned_cols=201 Identities=19% Similarity=0.244 Sum_probs=125.8
Q ss_pred CHHHHhHhCCcEEEEecchHHHHHH-HHHHH----cCC-CceEEEccCCCCcHHHHHHHHHHHHHh-CC-c--EEEEcCC
Q 018045 1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHL----TGR-PFRVFSLDTGRLNPETYRFFDEVEKHF-GI-R--IEYMFPD 70 (361)
Q Consensus 1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~----~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~-g~-~--i~~~~p~ 70 (361)
|++++++| ++|+|||||||||.|| ||+.+ .++ +|.|+|+|-+..|.+|.+||+++.+.+ ++ + ..+.-|-
T Consensus 20 l~~if~~f-~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~TidyV~em~~~~~dv~~~~yWvcLPl 98 (407)
T COG3969 20 LEWIFNTF-PRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTIDYVQEMRESYHDVIETFYWVCLPL 98 (407)
T ss_pred HHHHHhcC-CeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHHHHHHHHHhcccCccccceEEEeeh
Confidence 57888999 5999999999999766 77655 455 699999999999999999999999975 32 1 1111121
Q ss_pred h-----HHHHHHH--HhcC-----CCCCCc----cchhchh-hcccc------HHHHHHHcc---CCEEEEeeeccCCcc
Q 018045 71 A-----VEVQALV--RSKG-----LFSFYE----DGHQECC-RVRKV------RPLRRALKG---LRAWITGQRKDQSPG 124 (361)
Q Consensus 71 ~-----~~~~~~~--~~~~-----~~~~~~----~~~~~cc-~~~K~------~pl~~~~~~---~~~~i~G~R~~Es~~ 124 (361)
. +..+..+ -+.| ...+|. .++...+ ...++ .-+.+.+.+ ..++++|+|+|||.
T Consensus 99 ~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~~~~~ta~LvGiRadESl- 177 (407)
T COG3969 99 TTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQKRPATAVLVGIRADESL- 177 (407)
T ss_pred hcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHHHhccCCceEEEEeecchhhH-
Confidence 0 0000000 0000 000111 1222222 22222 112222222 25899999999997
Q ss_pred CccCCCce----ec--CCCCcCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCC--C
Q 018045 125 TRSEIPVV----QV--DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP--G 196 (361)
Q Consensus 125 ~R~~~~~~----~~--~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~--~ 196 (361)
+|...-.. .. +..+..+....+.++.++||+||..+|||.+..+++.+||||||+.|+- |-.+--+.++. |
T Consensus 178 NRf~ai~~~~k~~~~~~~pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~yN~LYDlmYqA-Gvp~~~MRVc~Pfg 256 (407)
T COG3969 178 NRFNAIARKEKLRFADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAYNPLYDLMYQA-GVPLRQMRVCEPFG 256 (407)
T ss_pred HHHHHHHHhhhcccCCCCCceeeecCCCceEEEEecccchHHHHHHHHHhcCCcccHHHHHHHHc-CCChhhccccCCCC
Confidence 88542211 11 1224444444566899999999999999999999999999999998875 64444333332 4
Q ss_pred CCCcCCCC
Q 018045 197 QHEREGRW 204 (361)
Q Consensus 197 ~~~~~gr~ 204 (361)
...|.|.|
T Consensus 257 d~qr~gL~ 264 (407)
T COG3969 257 DEQRKGLW 264 (407)
T ss_pred hhhhcccc
Confidence 56677765
No 21
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.90 E-value=5.8e-23 Score=159.80 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=95.4
Q ss_pred CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045 247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 326 (361)
Q Consensus 247 ~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~ 326 (361)
..+.|.+|++++|++++...+.+++++|.||||||++|+.+.|.++++++.+++ .+.|++|||+.+ .++|.++|+|.+
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~-~~l~~~~~~I~~ 84 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWP-QGKCRKQKHFFY 84 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCC-hHHHHHhcCCcc
Confidence 447899999999999855556899999999999999999999999999999987 799999999999 888833899999
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
+||+++|++|+. +..|.| .++.+.|..|+
T Consensus 85 ~PTl~lf~~g~~-~~~y~G-~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRG-PIEYKG-PMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCcc-ceEEeC-CCCHHHHHhhC
Confidence 999999998875 677887 79999998873
No 22
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.87 E-value=1.9e-21 Score=149.57 Aligned_cols=99 Identities=27% Similarity=0.640 Sum_probs=90.8
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
.|++|+.++|++.+. ++++++|.|||+||++|+.+.|.|+++++.+++ .+.|++|||+++ +.++ ++++|+++||
T Consensus 2 ~~~~l~~~~f~~~v~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~Pt 75 (101)
T cd03003 2 EIVTLDRGDFDAAVN---SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-RMLC-RSQGVNSYPS 75 (101)
T ss_pred CeEEcCHhhHHHHhc---CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-HHHH-HHcCCCccCE
Confidence 578999999999886 679999999999999999999999999999987 799999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHH
Q 018045 330 ILFFPKHSSKPIKYPSERRDVDSLMAF 356 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~ 356 (361)
+++|++|+. ...|.| .++.++|.+|
T Consensus 76 ~~~~~~g~~-~~~~~G-~~~~~~l~~f 100 (101)
T cd03003 76 LYVFPSGMN-PEKYYG-DRSKESLVKF 100 (101)
T ss_pred EEEEcCCCC-cccCCC-CCCHHHHHhh
Confidence 999999875 566776 7999999887
No 23
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.4e-21 Score=154.74 Aligned_cols=104 Identities=20% Similarity=0.362 Sum_probs=93.1
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
.+..++..+|++.+. +++.||+|+|||+||+||+.+.|.++++++.|.+ .+.|++||+|++ .+++ .+|+|..+||
T Consensus 44 ~~~~~s~~~~~~~Vi--~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~-~ela-~~Y~I~avPt 118 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI--NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEH-PELA-EDYEISAVPT 118 (150)
T ss_pred cccccCHHHHHHHHH--ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccc-cchH-hhcceeeeeE
Confidence 456678889988653 6899999999999999999999999999999988 899999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+++|++|++ ...+.| ..+.+.|.++|+++
T Consensus 119 vlvfknGe~-~d~~vG-~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 119 VLVFKNGEK-VDRFVG-AVPKEQLRSLIKKF 147 (150)
T ss_pred EEEEECCEE-eeeecc-cCCHHHHHHHHHHH
Confidence 999999984 334444 79999999999986
No 24
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.86 E-value=3.9e-21 Score=148.63 Aligned_cols=102 Identities=34% Similarity=0.661 Sum_probs=91.4
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
.|.+++.++|++.+. +++++++|.|||+||++|+.+.|.|+++++.+.+ .+.|++||++++ .+++ ++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~i~~~Pt 76 (104)
T cd03004 2 SVITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKY-ESLC-QQANIRAYPT 76 (104)
T ss_pred cceEcCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCch-HHHH-HHcCCCcccE
Confidence 578899999999875 3577999999999999999999999999999987 799999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCC-HHHHHHHH
Q 018045 330 ILFFPKHSSKPIKYPSERRD-VDSLMAFV 357 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~-~~~l~~~i 357 (361)
+++|++|++....|.| ..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~~G-~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNG-WHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccC-CCCCHHHHHhhC
Confidence 9999998555788887 565 99999885
No 25
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.86 E-value=5.7e-21 Score=148.78 Aligned_cols=102 Identities=27% Similarity=0.544 Sum_probs=91.7
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-----CCeEEEEEEcCCCchHHHHHcCCC
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-----NGVKVGKFRADGDQKEYAKQKLQL 324 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-----~~v~~~~vd~~~~~~~l~~~~~~v 324 (361)
.|.++++++|++.++ .+++++|.||||||++|+.+.|.|+++++.+++ ..+.|++|||+.+ .+++ ++|+|
T Consensus 2 ~v~~l~~~~f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~-~~~~v 76 (108)
T cd02996 2 EIVSLTSGNIDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIA-DRYRI 76 (108)
T ss_pred ceEEcCHhhHHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHH-HhCCC
Confidence 588999999999876 788999999999999999999999999988753 1589999999999 9999 99999
Q ss_pred CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 325 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 325 ~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
+++||+++|++|+.....|.| .++.++|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g-~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRG-QRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCcceecCC-CCCHHHHHhhC
Confidence 999999999999854577777 79999999986
No 26
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.85 E-value=9.4e-21 Score=148.36 Aligned_cols=104 Identities=22% Similarity=0.295 Sum_probs=93.5
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChh--HH--hhHHHHHHHHHHh--cCCCeEEEEEEcCCCchHHHHHcC
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQF--CQ--AMEGSYVELADKL--AGNGVKVGKFRADGDQKEYAKQKL 322 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~--C~--~~~p~~~~la~~~--~~~~v~~~~vd~~~~~~~l~~~~~ 322 (361)
..|..||++||++.+. +++.++|++||++||++ |+ .+.|.+.++++++ ++ ++.|++||++++ ++++ ++|
T Consensus 9 ~~v~~lt~~nF~~~v~--~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~-~~La-~~~ 83 (120)
T cd03065 9 DRVIDLNEKNYKQVLK--KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKD-AKVA-KKL 83 (120)
T ss_pred cceeeCChhhHHHHHH--hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCC-HHHH-HHc
Confidence 5789999999999875 46678899999999987 99 8999999999998 66 799999999999 9999 999
Q ss_pred CCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 323 QLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 323 ~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+|.++||+++|++|+ .+.+.| .++.+.|.+||+++
T Consensus 84 ~I~~iPTl~lfk~G~--~v~~~G-~~~~~~l~~~l~~~ 118 (120)
T cd03065 84 GLDEEDSIYVFKDDE--VIEYDG-EFAADTLVEFLLDL 118 (120)
T ss_pred CCccccEEEEEECCE--EEEeeC-CCCHHHHHHHHHHH
Confidence 999999999999998 556777 78999999999986
No 27
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.84 E-value=2.1e-20 Score=145.74 Aligned_cols=108 Identities=68% Similarity=1.119 Sum_probs=94.1
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
.|++++.++|++++...+++++++|.||++||++|+.+.|.|+++++.+++.++.++.||++.++..++.+.++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 58899999999998655678999999999999999999999999999998646999999999832778823599999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 330 ILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
+++|++|......|.|..++.++|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999888766889998558999999885
No 28
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.84 E-value=3.1e-20 Score=143.06 Aligned_cols=102 Identities=30% Similarity=0.618 Sum_probs=93.8
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045 251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330 (361)
Q Consensus 251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~ 330 (361)
|..+|+++|++.+. +++++++|.||++||++|+.+.|.|+++++.+++ ++.|+.||++++ ..++ ++|+|.++||+
T Consensus 1 v~~lt~~~f~~~i~--~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFIN--ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELC-KKYGVKSVPTI 75 (103)
T ss_dssp SEEESTTTHHHHHT--TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHH-HHTTCSSSSEE
T ss_pred CEECCHHHHHHHHH--ccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhh-hccCCCCCCEE
Confidence 57899999999887 2489999999999999999999999999999997 899999999999 9999 99999999999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 331 LFFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
++|++|+. ...+.| .++.++|.+||++
T Consensus 76 ~~~~~g~~-~~~~~g-~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 76 IFFKNGKE-VKRYNG-PRNAESLIEFIEK 102 (103)
T ss_dssp EEEETTEE-EEEEES-SSSHHHHHHHHHH
T ss_pred EEEECCcE-EEEEEC-CCCHHHHHHHHHc
Confidence 99999985 447776 6899999999986
No 29
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.84 E-value=3.6e-20 Score=142.42 Aligned_cols=100 Identities=26% Similarity=0.557 Sum_probs=89.3
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
.|.+|+.++|+++++ +. ++|+|||+||++|+.+.|.|+++++.+++.++.|++||++.+ +.++ ++|+|.++||
T Consensus 2 ~v~~l~~~~f~~~~~----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~-~~~~i~~~Pt 74 (101)
T cd02994 2 NVVELTDSNWTLVLE----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLS-GRFFVTALPT 74 (101)
T ss_pred ceEEcChhhHHHHhC----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHH-HHcCCcccCE
Confidence 588999999998764 33 899999999999999999999999988654699999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
+++|++|+ ...+.| .++.++|.+||++
T Consensus 75 ~~~~~~g~--~~~~~G-~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGV--FRRYQG-PRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCC--EEEecC-CCCHHHHHHHHhC
Confidence 99999887 567777 7999999999874
No 30
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.83 E-value=3.3e-20 Score=144.93 Aligned_cols=105 Identities=23% Similarity=0.355 Sum_probs=89.5
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE
Q 018045 252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331 (361)
Q Consensus 252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~ 331 (361)
..++.++|++.+...+.+++++|+||||||++|+.+.|.++++++.+++.++.|++||++.+ +.++ ++++|.++||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~-~~~~V~~~Pt~~ 84 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLA-RKLGAHSVPAIV 84 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHH-HHcCCccCCEEE
Confidence 34677888765432346899999999999999999999999999999864699999999999 9999 999999999999
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 332 FFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 332 ~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+|++|+ ...+..|..+.+.|.+||+++
T Consensus 85 i~~~g~--~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 85 GIINGQ--VTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEECCE--EEEEecCCCCHHHHHHHHhcC
Confidence 999887 454444478999999999875
No 31
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.2e-20 Score=160.27 Aligned_cols=107 Identities=22% Similarity=0.427 Sum_probs=98.2
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
..|.++|..||++.+...+..+||+|+||+|||++|+.+.|.+++++..++| .+.+++||||.+ +.++ .+|+|+++|
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~-p~vA-aqfgiqsIP 99 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAE-PMVA-AQFGVQSIP 99 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcc-hhHH-HHhCcCcCC
Confidence 3499999999999887677788999999999999999999999999999999 999999999999 9999 999999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
|++.|++|+. ...|.| ....+.+.+||+++
T Consensus 100 tV~af~dGqp-VdgF~G-~qPesqlr~~ld~~ 129 (304)
T COG3118 100 TVYAFKDGQP-VDGFQG-AQPESQLRQFLDKV 129 (304)
T ss_pred eEEEeeCCcC-ccccCC-CCcHHHHHHHHHHh
Confidence 9999999994 556665 78889999999875
No 32
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.82 E-value=1.3e-19 Score=141.28 Aligned_cols=103 Identities=25% Similarity=0.497 Sum_probs=91.9
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC--CchHHHHHcCCCCCC
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--DQKEYAKQKLQLGSF 327 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~--~~~~l~~~~~~v~~~ 327 (361)
.|.+|++++|++.+. +.+++++|.|||+||++|+.+.|.++++++.+.+ .+.|+.||++. + .+++ ++|+|+++
T Consensus 1 ~v~~l~~~~~~~~i~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~-~~~~-~~~~i~~~ 75 (109)
T cd03002 1 PVYELTPKNFDKVVH--NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKN-KPLC-GKYGVQGF 75 (109)
T ss_pred CeEEcchhhHHHHHh--cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcccc-HHHH-HHcCCCcC
Confidence 367899999999875 4577899999999999999999999999999987 79999999998 7 8999 99999999
Q ss_pred CeEEEEeCCC----CCeeecCCCCCCHHHHHHHHH
Q 018045 328 PTILFFPKHS----SKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 328 Pt~~~~~~g~----~~~~~~~~~~~~~~~l~~~i~ 358 (361)
||+++|++|+ .....|.| .++.++|.+||.
T Consensus 76 Pt~~~~~~~~~~~~~~~~~~~G-~~~~~~l~~fi~ 109 (109)
T cd03002 76 PTLKVFRPPKKASKHAVEDYNG-ERSAKAIVDFVL 109 (109)
T ss_pred CEEEEEeCCCcccccccccccC-ccCHHHHHHHhC
Confidence 9999999886 23677877 799999999983
No 33
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.81 E-value=4.8e-19 Score=136.54 Aligned_cols=102 Identities=29% Similarity=0.593 Sum_probs=92.0
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
.|.++++++|++.+. +.+++++|.||++||++|+.+.|.|.++++.+.+ .+.|+.+|++++ .+++ ++|+|+++|+
T Consensus 1 ~v~~l~~~~~~~~i~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~-~~~~-~~~~i~~~P~ 75 (103)
T cd03001 1 DVVELTDSNFDKKVL--NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH-QSLA-QQYGVRGFPT 75 (103)
T ss_pred CeEEcCHHhHHHHHh--cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch-HHHH-HHCCCCccCE
Confidence 367899999999875 3566799999999999999999999999999987 799999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 330 ILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
+++|++|+.....|.| ..+.++|.+|+
T Consensus 76 ~~~~~~~~~~~~~~~g-~~~~~~l~~~~ 102 (103)
T cd03001 76 IKVFGAGKNSPQDYQG-GRTAKAIVSAA 102 (103)
T ss_pred EEEECCCCcceeecCC-CCCHHHHHHHh
Confidence 9999999655788888 69999999986
No 34
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.81 E-value=4.3e-19 Score=154.06 Aligned_cols=107 Identities=32% Similarity=0.643 Sum_probs=95.5
Q ss_pred CCCceecCcccHHHHHhhc--CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC
Q 018045 248 SQNLVTLNRTGMENLARLD--HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 325 (361)
Q Consensus 248 ~~~v~~l~~~~f~~~~~~~--~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~ 325 (361)
.+.|.++++++|++++... ..+++++|+|||+||++|+.+.|.|+++++.+++ .+.|+.||++++ .+++ ++|+|.
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~-~~l~-~~~~I~ 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA-LNLA-KRFAIK 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc-HHHH-HHcCCC
Confidence 3579999999999987522 1368999999999999999999999999999987 799999999999 9999 999999
Q ss_pred CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
++||+++|++|+ ...+.+|.++.++|.+|+.+
T Consensus 106 ~~PTl~~f~~G~--~v~~~~G~~s~e~L~~fi~~ 137 (224)
T PTZ00443 106 GYPTLLLFDKGK--MYQYEGGDRSTEKLAAFALG 137 (224)
T ss_pred cCCEEEEEECCE--EEEeeCCCCCHHHHHHHHHH
Confidence 999999999987 67776668999999999875
No 35
>PHA02278 thioredoxin-like protein
Probab=99.80 E-value=3.2e-19 Score=136.54 Aligned_cols=94 Identities=10% Similarity=0.159 Sum_probs=78.5
Q ss_pred cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEE
Q 018045 256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~ 332 (361)
.++|++.+. ++++++|+|||+||++|+.|.|.++++++.+.. .+.|++||++.++ .+++ ++|+|.++||+++
T Consensus 4 ~~~~~~~i~---~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~-~~~~I~~iPT~i~ 78 (103)
T PHA02278 4 LVDLNTAIR---QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAV-KLFDIMSTPVLIG 78 (103)
T ss_pred HHHHHHHHh---CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHH-HHCCCccccEEEE
Confidence 456777775 899999999999999999999999999988655 5789999999762 5799 9999999999999
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHH
Q 018045 333 FPKHSSKPIKYPSERRDVDSLMAF 356 (361)
Q Consensus 333 ~~~g~~~~~~~~~~~~~~~~l~~~ 356 (361)
|++|+ .+....|..+.+.|.++
T Consensus 79 fk~G~--~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQ--LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECCE--EEEEEeCCCCHHHHHhh
Confidence 99998 44444336788887765
No 36
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.80 E-value=4.3e-19 Score=136.55 Aligned_cols=100 Identities=28% Similarity=0.595 Sum_probs=88.5
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSF 327 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~~ 327 (361)
++.+|++++|++.+. + +.++|.|||+||++|+.+.|.++++++.+++ ..+.|+.||++.+ ..++ ++|+|.++
T Consensus 1 ~~~~l~~~~f~~~~~---~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~v~~~ 74 (102)
T cd03005 1 GVLELTEDNFDHHIA---E-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELC-SEFQVRGY 74 (102)
T ss_pred CeeECCHHHHHHHhh---c-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhH-hhcCCCcC
Confidence 367899999999885 3 3599999999999999999999999999975 3699999999999 9999 99999999
Q ss_pred CeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 328 PTILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
||+++|++|+. ...+.| ..+.++|.+||
T Consensus 75 Pt~~~~~~g~~-~~~~~G-~~~~~~l~~~i 102 (102)
T cd03005 75 PTLLLFKDGEK-VDKYKG-TRDLDSLKEFV 102 (102)
T ss_pred CEEEEEeCCCe-eeEeeC-CCCHHHHHhhC
Confidence 99999998874 566777 78999998875
No 37
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.80 E-value=1.9e-19 Score=138.77 Aligned_cols=79 Identities=13% Similarity=0.260 Sum_probs=71.4
Q ss_pred cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeC
Q 018045 256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 335 (361)
Q Consensus 256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~ 335 (361)
.++|++.+. .+.+++++|.|||+||++|+.|.|.++++++++++ .+.|++||++++ ++++ ++|+|.++||+++|++
T Consensus 2 ~~~~~~~i~-~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~-~~la-~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 2 GWAVDQAIL-SEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEV-PDFN-KMYELYDPPTVMFFFR 77 (114)
T ss_pred HHHHHHHHh-ccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCC-HHHH-HHcCCCCCCEEEEEEC
Confidence 456777764 23588999999999999999999999999999987 689999999999 9999 9999999999999999
Q ss_pred CCC
Q 018045 336 HSS 338 (361)
Q Consensus 336 g~~ 338 (361)
|+.
T Consensus 78 G~~ 80 (114)
T cd02954 78 NKH 80 (114)
T ss_pred CEE
Confidence 985
No 38
>PRK10996 thioredoxin 2; Provisional
Probab=99.80 E-value=2.8e-18 Score=139.39 Aligned_cols=104 Identities=16% Similarity=0.412 Sum_probs=92.8
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
.+.+++..+|+++++ ++++++|+||++||++|+.+.|.|+++++.+.+ ++.|++||++.+ ++++ ++|+|.++||
T Consensus 36 ~~i~~~~~~~~~~i~---~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~-~~l~-~~~~V~~~Pt 109 (139)
T PRK10996 36 EVINATGETLDKLLQ---DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAE-RELS-ARFRIRSIPT 109 (139)
T ss_pred CCEEcCHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCC-HHHH-HhcCCCccCE
Confidence 466789999999876 789999999999999999999999999999887 799999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045 330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 361 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~ 361 (361)
+++|++|+. ...+.| ..+.+.|.+||+++.
T Consensus 110 lii~~~G~~-v~~~~G-~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 110 IMIFKNGQV-VDMLNG-AVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEECCEE-EEEEcC-CCCHHHHHHHHHHhC
Confidence 999998873 334455 789999999999863
No 39
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.80 E-value=4.8e-19 Score=135.50 Aligned_cols=92 Identities=24% Similarity=0.440 Sum_probs=80.6
Q ss_pred cHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCchHHHHHcCCCCCCCeEEEEeCC
Q 018045 258 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQLGSFPTILFFPKH 336 (361)
Q Consensus 258 ~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~~~~~v~~~Pt~~~~~~g 336 (361)
++.+++. ..++++++|.|||+||++|+.+.|.|+++++.+++ +.++.||.+ .+ ++++ ++|+|.++||+++|++|
T Consensus 8 ~~~~~~~-~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~-~~l~-~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 8 IALDLMA-FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIK-PSLL-SRYGVVGFPTILLFNST 82 (100)
T ss_pred HHHHHHH-hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCC-HHHH-HhcCCeecCEEEEEcCC
Confidence 4444443 35789999999999999999999999999999975 889999999 67 8999 99999999999999988
Q ss_pred CCCeeecCCCCCCHHHHHHHH
Q 018045 337 SSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~i 357 (361)
. ...+.| .++.++|.+||
T Consensus 83 -~-~~~~~G-~~~~~~l~~f~ 100 (100)
T cd02999 83 -P-RVRYNG-TRTLDSLAAFY 100 (100)
T ss_pred -c-eeEecC-CCCHHHHHhhC
Confidence 3 778887 69999999985
No 40
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.79 E-value=8.2e-19 Score=134.98 Aligned_cols=98 Identities=18% Similarity=0.309 Sum_probs=84.8
Q ss_pred cCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEE
Q 018045 254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 333 (361)
Q Consensus 254 l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~ 333 (361)
-+.++|++++. ++++++|+|||+||++|+.+.|.++++++.+++..+.|+.+|++ + .+++ ++|+|+++||+++|
T Consensus 5 ~~~~~~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~~~-~~~~v~~~Pt~~~~ 78 (102)
T cd02948 5 NNQEEWEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-IDTL-KRYRGKCEPTFLFY 78 (102)
T ss_pred cCHHHHHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HHHH-HHcCCCcCcEEEEE
Confidence 36788888776 79999999999999999999999999999997545899999999 6 7889 99999999999999
Q ss_pred eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 334 PKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 334 ~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
++|+ ......| .+.+.|.++|+++
T Consensus 79 ~~g~--~~~~~~G-~~~~~~~~~i~~~ 102 (102)
T cd02948 79 KNGE--LVAVIRG-ANAPLLNKTITEL 102 (102)
T ss_pred ECCE--EEEEEec-CChHHHHHHHhhC
Confidence 9988 4444443 5889999999875
No 41
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.79 E-value=1.1e-18 Score=132.83 Aligned_cols=96 Identities=18% Similarity=0.327 Sum_probs=83.0
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045 257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 336 (361)
Q Consensus 257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g 336 (361)
++|++.+. .+.+++++|+|||+||++|+.+.|.++++++.+.+ .+.+++||++.+ ..++ ++|+|.++||+++|++|
T Consensus 1 ~~f~~~i~-~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-~~l~-~~~~i~~~Pt~~~~~~g 76 (96)
T cd02956 1 QNFQQVLQ-ESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQ-PQIA-QQFGVQALPTVYLFAAG 76 (96)
T ss_pred CChHHHHH-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCC-HHHH-HHcCCCCCCEEEEEeCC
Confidence 35777664 23478999999999999999999999999999987 799999999999 9999 99999999999999988
Q ss_pred CCCeeecCCCCCCHHHHHHHHH
Q 018045 337 SSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
+. ...+.| ..+.++|.+||+
T Consensus 77 ~~-~~~~~g-~~~~~~l~~~l~ 96 (96)
T cd02956 77 QP-VDGFQG-AQPEEQLRQMLD 96 (96)
T ss_pred EE-eeeecC-CCCHHHHHHHhC
Confidence 73 345665 789999999874
No 42
>PRK09381 trxA thioredoxin; Provisional
Probab=99.79 E-value=2e-18 Score=134.61 Aligned_cols=106 Identities=24% Similarity=0.397 Sum_probs=92.6
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 327 (361)
Q Consensus 248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~ 327 (361)
+..|.++++++|++.+. +.+++++|+||++||++|+.+.|.++++++.+.+ ++.|+.||++.+ ..++ ++|+|.++
T Consensus 2 ~~~v~~~~~~~~~~~v~--~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~ 76 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-PGTA-PKYGIRGI 76 (109)
T ss_pred CCcceeeChhhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC-hhHH-HhCCCCcC
Confidence 45689999999997553 3688999999999999999999999999999987 799999999999 9999 99999999
Q ss_pred CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
||+++|++|+. ...+.| ..+.++|.++|++.
T Consensus 77 Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~i~~~ 107 (109)
T PRK09381 77 PTLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN 107 (109)
T ss_pred CEEEEEeCCeE-EEEecC-CCCHHHHHHHHHHh
Confidence 99999998873 334445 68899999999764
No 43
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.78 E-value=2.6e-18 Score=132.55 Aligned_cols=102 Identities=34% Similarity=0.716 Sum_probs=89.4
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
+|.+|+.++|++.+. +.+++++|+||++||++|+.+.|.++++++.+++ .++.|+++|++.+ +++ ..+++.++|
T Consensus 1 ~v~~l~~~~f~~~i~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~-~~~~~~~~P 75 (104)
T cd02995 1 PVKVVVGKNFDEVVL--DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVP-SEFVVDGFP 75 (104)
T ss_pred CeEEEchhhhHHHHh--CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhh-hhccCCCCC
Confidence 378899999999875 3568999999999999999999999999999976 4699999999987 577 789999999
Q ss_pred eEEEEeCCC-CCeeecCCCCCCHHHHHHHH
Q 018045 329 TILFFPKHS-SKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 329 t~~~~~~g~-~~~~~~~~~~~~~~~l~~~i 357 (361)
|+++|++|+ .....|.| ..+.++|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g-~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEG-DRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccC-CcCHHHHHhhC
Confidence 999999887 33677887 79999999886
No 44
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.78 E-value=3.2e-18 Score=132.14 Aligned_cols=101 Identities=21% Similarity=0.511 Sum_probs=89.2
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCC--CchHHHHHcCCCCC
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG--DQKEYAKQKLQLGS 326 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~--~~~~l~~~~~~v~~ 326 (361)
+|.++++.+|++.++ .+++++|+||++||++|+.+.|.++++++.+++ ..+.++.+|++. + ..++ ++|+|++
T Consensus 1 ~~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~-~~~~i~~ 75 (104)
T cd02997 1 DVVHLTDEDFRKFLK---KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-DALK-EEYNVKG 75 (104)
T ss_pred CeEEechHhHHHHHh---hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-HHHH-HhCCCcc
Confidence 367889999999887 777999999999999999999999999999973 368999999998 7 8999 9999999
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
+||+++|++|+. ...+.| ..+.+.|.+||
T Consensus 76 ~Pt~~~~~~g~~-~~~~~g-~~~~~~l~~~l 104 (104)
T cd02997 76 FPTFKYFENGKF-VEKYEG-ERTAEDIIEFM 104 (104)
T ss_pred ccEEEEEeCCCe-eEEeCC-CCCHHHHHhhC
Confidence 999999998874 566766 68999998885
No 45
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.78 E-value=3.1e-18 Score=131.96 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=81.6
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--hHHHHHcCCCCCCCeEEE
Q 018045 255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~v~~~Pt~~~ 332 (361)
+.++|++.+. ...+++++|+|||+||++|+.+.|.++++++.+ . ++.|++||++++. .+++ ++|+|.++||+++
T Consensus 2 ~~~~~~~~i~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~-~v~~~~vd~d~~~~~~~l~-~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALK-KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N-DVVFLLVNGDENDSTMELC-RREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHH-HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C-CCEEEEEECCCChHHHHHH-HHcCCCcCCEEEE
Confidence 4567888775 234899999999999999999999999999999 3 6999999999872 3789 8999999999999
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 333 FPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 333 ~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
|++|+. ...+.| ...++|.+.+..
T Consensus 78 ~~~G~~-v~~~~G--~~~~~l~~~~~~ 101 (103)
T cd02985 78 YKDGEK-IHEEEG--IGPDELIGDVLY 101 (103)
T ss_pred EeCCeE-EEEEeC--CCHHHHHHHHHh
Confidence 999874 556665 667888877654
No 46
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.77 E-value=3.6e-18 Score=131.98 Aligned_cols=102 Identities=36% Similarity=0.743 Sum_probs=90.3
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCC-CchHHHHHcCCCCCCC
Q 018045 251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG-DQKEYAKQKLQLGSFP 328 (361)
Q Consensus 251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~-~~~~l~~~~~~v~~~P 328 (361)
|.++++++|++.+. +.+++++|.||++||++|+.+.|.++++++.++. .++.++.+|++. + .+++ ++|+|.++|
T Consensus 2 ~~~l~~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~-~~~~i~~~P 77 (105)
T cd02998 2 VVELTDSNFDKVVG--DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-KDLA-KKYGVSGFP 77 (105)
T ss_pred eEEcchhcHHHHhc--CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-hhhH-HhCCCCCcC
Confidence 67889999999765 3466999999999999999999999999999973 369999999999 8 9999 999999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 329 TILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
++++|++|+.....+.| .++.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~g-~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEG-GRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCC-ccCHHHHHhhC
Confidence 99999888655777877 69999999885
No 47
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.77 E-value=3.5e-18 Score=139.66 Aligned_cols=87 Identities=22% Similarity=0.466 Sum_probs=78.4
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC--
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS-- 326 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~-- 326 (361)
..+.+++.++|++.+. .+.+++++|+|||+||++|+.+.|.++++++.+++.++.|++||++++ ++++ ++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~-~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la-~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELE-RDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVA-EKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHH-HHcCceecC
Confidence 5788999999999775 234679999999999999999999999999999754699999999999 9999 9999988
Q ss_pred ----CCeEEEEeCCCC
Q 018045 327 ----FPTILFFPKHSS 338 (361)
Q Consensus 327 ----~Pt~~~~~~g~~ 338 (361)
+||+++|++|+.
T Consensus 105 ~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 105 LSKQLPTIILFQGGKE 120 (152)
T ss_pred CcCCCCEEEEEECCEE
Confidence 999999999985
No 48
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.6e-18 Score=131.53 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=76.8
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 347 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~ 347 (361)
.+++++|+|||+||+||+.+.|.+.+++.+|++ +.|++||+|+. .+++ ++++|..+||+++|++|++ ...+.|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~-~~~~-~~~~V~~~PTf~f~k~g~~-~~~~vG-- 92 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDEL-EEVA-KEFNVKAMPTFVFYKGGEE-VDEVVG-- 92 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccC-HhHH-HhcCceEeeEEEEEECCEE-EEEEec--
Confidence 469999999999999999999999999999986 99999999996 9999 9999999999999999985 555555
Q ss_pred CCHHHHHHHHHHh
Q 018045 348 RDVDSLMAFVDAL 360 (361)
Q Consensus 348 ~~~~~l~~~i~~~ 360 (361)
.+.++|.+.|.+.
T Consensus 93 a~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 93 ANKAELEKKIAKH 105 (106)
T ss_pred CCHHHHHHHHHhc
Confidence 5667888888764
No 49
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.77 E-value=5.8e-18 Score=130.08 Aligned_cols=100 Identities=32% Similarity=0.735 Sum_probs=91.2
Q ss_pred cCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC-CeEEEEEEcCCCchHHHHHcCCCCCCCeEEE
Q 018045 254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 254 l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~-~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~ 332 (361)
|++++|++.+. ++++++|+||++||++|+.+.|.++++++.+++. ++.++.+|++++ ..++ ++|+|.++|++++
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-~~~~i~~~P~~~~ 75 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-KDLA-SRFGVSGFPTIKF 75 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-HHHH-HhCCCCcCCEEEE
Confidence 57789999886 8999999999999999999999999999999863 599999999999 9999 9999999999999
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 333 FPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 333 ~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
|++|+. ...|.| ..+.++|..||++.
T Consensus 76 ~~~~~~-~~~~~g-~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKK-PVDYEG-GRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCc-ceeecC-CCCHHHHHHHHHhc
Confidence 998886 778887 78999999999874
No 50
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.77 E-value=3.7e-18 Score=132.03 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=85.3
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEEC--CCCh---hHHhhHHHHHHHHHHhcCCCeEEEEEEcC-----CCchHHHH
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYA--PWCQ---FCQAMEGSYVELADKLAGNGVKVGKFRAD-----GDQKEYAK 319 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a--~wC~---~C~~~~p~~~~la~~~~~~~v~~~~vd~~-----~~~~~l~~ 319 (361)
.++.|+++||++.+. +++.+||.||| |||+ +|+.+.|++.+.+. .|.+++|||+ .+ .+||
T Consensus 2 g~v~L~~~nF~~~v~---~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~-~~L~- 71 (116)
T cd03007 2 GCVDLDTVTFYKVIP---KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLN-MELG- 71 (116)
T ss_pred CeeECChhhHHHHHh---cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhh-HHHH-
Confidence 478899999999987 89999999999 8888 77777777666553 4899999994 45 8999
Q ss_pred HcCCCC--CCCeEEEEeCCC-CCeeecCCCCCCHHHHHHHHHHh
Q 018045 320 QKLQLG--SFPTILFFPKHS-SKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 320 ~~~~v~--~~Pt~~~~~~g~-~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
++|+|+ ++||+.+|++|. ..++.|.|+.++.+.|++||++.
T Consensus 72 ~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 72 ERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999 999999999984 33688998349999999999863
No 51
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.77 E-value=2.9e-18 Score=131.19 Aligned_cols=99 Identities=12% Similarity=0.143 Sum_probs=87.3
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCC--ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC
Q 018045 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPW--CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 325 (361)
Q Consensus 248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~w--C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~ 325 (361)
.....+++..||++.+. .+..++|.||++| |++|+.+.|.|+++++++++ .+.|++||++++ +.++ .+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~-~~la-~~f~V~ 82 (111)
T cd02965 9 RHGWPRVDAATLDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADE-QALA-ARFGVL 82 (111)
T ss_pred hcCCcccccccHHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCC-HHHH-HHcCCC
Confidence 35678899999999886 8999999999997 99999999999999999987 789999999999 9999 999999
Q ss_pred CCCeEEEEeCCCCCeeecCCCCCCHHHHH
Q 018045 326 SFPTILFFPKHSSKPIKYPSERRDVDSLM 354 (361)
Q Consensus 326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~ 354 (361)
++||+++|++|+. .....| ..+.+++.
T Consensus 83 sIPTli~fkdGk~-v~~~~G-~~~~~e~~ 109 (111)
T cd02965 83 RTPALLFFRDGRY-VGVLAG-IRDWDEYV 109 (111)
T ss_pred cCCEEEEEECCEE-EEEEeC-ccCHHHHh
Confidence 9999999999983 334444 67777764
No 52
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-18 Score=163.41 Aligned_cols=106 Identities=25% Similarity=0.542 Sum_probs=99.5
Q ss_pred CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCC
Q 018045 247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQL 324 (361)
Q Consensus 247 ~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v 324 (361)
.+..|..|+.+||++.+. .+..++|.||||||++|+.+.|.+++.|+.++. ..+..++|||+.+ .++| .+|.|
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~---~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~-~~y~v 97 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETIN---GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLA-SKYEV 97 (493)
T ss_pred cccceEEEecccHHHHhc---cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhH-hhhcC
Confidence 346799999999999998 899999999999999999999999999999987 3899999999999 9999 99999
Q ss_pred CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 325 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 325 ~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
++|||+.+|++|.. ...|.| .++++.++.|+++
T Consensus 98 ~gyPTlkiFrnG~~-~~~Y~G-~r~adgIv~wl~k 130 (493)
T KOG0190|consen 98 RGYPTLKIFRNGRS-AQDYNG-PREADGIVKWLKK 130 (493)
T ss_pred CCCCeEEEEecCCc-ceeccC-cccHHHHHHHHHh
Confidence 99999999999996 699998 7999999999986
No 53
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.76 E-value=1e-17 Score=129.35 Aligned_cols=95 Identities=26% Similarity=0.621 Sum_probs=83.6
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045 257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 334 (361)
Q Consensus 257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~ 334 (361)
++|+++. .+++++|.|||+||++|+.+.|.|+++++.+++ .++.++.+|++.. .+++ ++|+|.++||+++|+
T Consensus 7 ~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 7 DSFKDVR----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIA-SEFGVRGYPTIKLLK 80 (104)
T ss_pred hhhhhhc----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHH-hhcCCccccEEEEEc
Confidence 6777743 578999999999999999999999999999864 2599999999999 9999 999999999999997
Q ss_pred CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 335 KHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 335 ~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+|. ...+.| ..+.++|.+|++++
T Consensus 81 ~~~--~~~~~G-~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GDL--AYNYRG-PRTKDDIVEFANRV 103 (104)
T ss_pred CCC--ceeecC-CCCHHHHHHHHHhh
Confidence 764 566777 78999999999976
No 54
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.75 E-value=1.3e-17 Score=130.50 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045 249 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 327 (361)
Q Consensus 249 ~~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~ 327 (361)
+.+.++++ ++|.+.+. ++++++|+||++||++|+.+.|.++++++.+.+ +.|++||++++ .+++ ++|+|.++
T Consensus 4 g~v~~i~~~~~~~~~i~---~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~~-~~l~-~~~~v~~v 76 (113)
T cd02989 4 GKYREVSDEKEFFEIVK---SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEKA-PFLV-EKLNIKVL 76 (113)
T ss_pred CCeEEeCCHHHHHHHHh---CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcccC-HHHH-HHCCCccC
Confidence 35777777 88888876 789999999999999999999999999999865 89999999999 9999 99999999
Q ss_pred CeEEEEeCCCCCe-----eecCC-CCCCHHHHHHHH
Q 018045 328 PTILFFPKHSSKP-----IKYPS-ERRDVDSLMAFV 357 (361)
Q Consensus 328 Pt~~~~~~g~~~~-----~~~~~-~~~~~~~l~~~i 357 (361)
||+++|++|+... ....+ +..+.+++..||
T Consensus 77 Pt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 77 PTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999999997421 12222 457788888776
No 55
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.75 E-value=1.5e-17 Score=133.18 Aligned_cols=101 Identities=11% Similarity=0.192 Sum_probs=84.0
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE-EE
Q 018045 255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL-FF 333 (361)
Q Consensus 255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~-~~ 333 (361)
+..+|++.+. ...+++++|.|||+||++|+.+.|.++++++.+++ .+.|++||+|++ ++++ +.|+|++.|+++ +|
T Consensus 10 s~~e~d~~I~-~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~-~dla-~~y~I~~~~t~~~ff 85 (142)
T PLN00410 10 SGWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEV-PDFN-TMYELYDPCTVMFFF 85 (142)
T ss_pred CHHHHHHHHH-hcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCC-HHHH-HHcCccCCCcEEEEE
Confidence 4577888774 23688999999999999999999999999999987 688899999999 9999 999999887666 88
Q ss_pred eCCCCCeeecCCC--------CCCHHHHHHHHHHh
Q 018045 334 PKHSSKPIKYPSE--------RRDVDSLMAFVDAL 360 (361)
Q Consensus 334 ~~g~~~~~~~~~~--------~~~~~~l~~~i~~~ 360 (361)
++|+. .+.+..| ..+.++|++.++.+
T Consensus 86 k~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 86 RNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred ECCeE-EEEEecccccccccccCCHHHHHHHHHHH
Confidence 98875 4444444 46888888888754
No 56
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.74 E-value=2.7e-17 Score=125.65 Aligned_cols=100 Identities=10% Similarity=0.218 Sum_probs=83.1
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045 257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 336 (361)
Q Consensus 257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g 336 (361)
++|++.+.. ..+++|+|.|+|+||++|+.|.|.++++++++++ .+.|++||+|+. ++++ ++|+|...||+++|++|
T Consensus 3 ~~~d~~i~~-~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev-~dva-~~y~I~amPtfvffkng 78 (114)
T cd02986 3 KEVDQAIKS-TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKV-PVYT-QYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHh-cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEecccc-HHHH-HhcCceeCcEEEEEECC
Confidence 456666642 2689999999999999999999999999999975 499999999999 9999 99999999999999999
Q ss_pred CCCeeecCCCC--------CCHHHHHHHHHHh
Q 018045 337 SSKPIKYPSER--------RDVDSLMAFVDAL 360 (361)
Q Consensus 337 ~~~~~~~~~~~--------~~~~~l~~~i~~~ 360 (361)
+.....+..|. .+.++|++.++.+
T Consensus 79 kh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 79 QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred cEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 86555555432 3557777777643
No 57
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.7e-18 Score=159.50 Aligned_cols=123 Identities=26% Similarity=0.530 Sum_probs=106.9
Q ss_pred CCCCCCCCCCcccccccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEE
Q 018045 230 GNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKF 308 (361)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~v 308 (361)
.....+.-.|++.++-.+..+|..|..+||++++. +++|.|||.||||||+||+++.|+|++|++.+++ .++.+++|
T Consensus 347 ~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~--de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKm 424 (493)
T KOG0190|consen 347 DGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVL--DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKM 424 (493)
T ss_pred cCccccccccCCCCcccccCCeEEEeecCHHHHhh--ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence 34456667778888777778899999999999885 7899999999999999999999999999999998 48999999
Q ss_pred EcCCCchHHHHHcCCCCCCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHH
Q 018045 309 RADGDQKEYAKQKLQLGSFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 309 d~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~ 359 (361)
|.+.| ++. ...+.++||+++|+.|.+. ++.|.| .++.++|..||++
T Consensus 425 DaTaN--d~~--~~~~~~fPTI~~~pag~k~~pv~y~g-~R~le~~~~fi~~ 471 (493)
T KOG0190|consen 425 DATAN--DVP--SLKVDGFPTILFFPAGHKSNPVIYNG-DRTLEDLKKFIKK 471 (493)
T ss_pred ccccc--cCc--cccccccceEEEecCCCCCCCcccCC-CcchHHHHhhhcc
Confidence 99999 544 5678889999999888754 888987 7999999999974
No 58
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.73 E-value=2.3e-17 Score=129.37 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=84.2
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
+.+.++++++|.+.+...+.+++++|+||+|||++|+.+.|.++++++.+.+ +.|++||++++ .++ ++|+|.++|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~~--~l~-~~~~i~~~P 78 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEKA--FLV-NYLDIKVLP 78 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchhh--HHH-HhcCCCcCC
Confidence 4578899999998886222348999999999999999999999999999965 89999999976 889 999999999
Q ss_pred eEEEEeCCCCCeeecCC------CCCCHHHHHHHH
Q 018045 329 TILFFPKHSSKPIKYPS------ERRDVDSLMAFV 357 (361)
Q Consensus 329 t~~~~~~g~~~~~~~~~------~~~~~~~l~~~i 357 (361)
|+++|++|+.. ....| ...+.+.|.+++
T Consensus 79 t~~~f~~G~~v-~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 79 TLLVYKNGELI-DNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEEECCEEE-EEEecHHHhCCCCCCHHHHHHHh
Confidence 99999999852 22222 345667776665
No 59
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.73 E-value=6.8e-17 Score=126.70 Aligned_cols=103 Identities=24% Similarity=0.522 Sum_probs=85.0
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCC--CchHHHHHcCCCC
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADG--DQKEYAKQKLQLG 325 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~--~~~~l~~~~~~v~ 325 (361)
.+.+++.++|++.++ +.+++++|+||++||++|+.+.|.|+++++.+++ +.+.|+.|||+. + .+++ ++|+|+
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~-~~~~-~~~~i~ 77 (114)
T cd02992 2 PVIVLDAASFNSALL--GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN-VALC-RDFGVT 77 (114)
T ss_pred CeEECCHHhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh-HHHH-HhCCCC
Confidence 578999999999886 3457999999999999999999999999999864 258999999864 4 7899 999999
Q ss_pred CCCeEEEEeCCCCC---eeecCCCCCCHHHHHHH
Q 018045 326 SFPTILFFPKHSSK---PIKYPSERRDVDSLMAF 356 (361)
Q Consensus 326 ~~Pt~~~~~~g~~~---~~~~~~~~~~~~~l~~~ 356 (361)
++||+++|++|... ...+.|..+..+++.+.
T Consensus 78 ~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02992 78 GYPTLRYFPPFSKEATDGLKQEGPERDVNELREA 111 (114)
T ss_pred CCCEEEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence 99999999888742 24666655666666543
No 60
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.72 E-value=9.2e-17 Score=123.04 Aligned_cols=100 Identities=25% Similarity=0.432 Sum_probs=86.5
Q ss_pred cCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEE
Q 018045 254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 333 (361)
Q Consensus 254 l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~ 333 (361)
++.++|++.++ +.+++++|.||++||++|+.+.|.++++++.+.+ ++.|+.||++.+ ..++ ++|+|.++|++++|
T Consensus 1 i~~~~~~~~~~--~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~P~~~~~ 75 (101)
T TIGR01068 1 LTDANFDETIA--SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDEN-PDIA-AKYGIRSIPTLLLF 75 (101)
T ss_pred CCHHHHHHHHh--hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCC-HHHH-HHcCCCcCCEEEEE
Confidence 45678888765 3467999999999999999999999999999986 799999999999 9999 99999999999999
Q ss_pred eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 334 PKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 334 ~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
++|+. ...+.| ..+.++|.+||++.
T Consensus 76 ~~g~~-~~~~~g-~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 76 KNGKE-VDRSVG-ALPKAALKQLINKN 100 (101)
T ss_pred eCCcE-eeeecC-CCCHHHHHHHHHhh
Confidence 98873 334444 78899999999875
No 61
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.72 E-value=5.5e-17 Score=123.94 Aligned_cols=99 Identities=31% Similarity=0.677 Sum_probs=87.2
Q ss_pred ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE
Q 018045 253 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331 (361)
Q Consensus 253 ~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~ 331 (361)
+|+.++|.+.+. ++++++|.||++||++|+.+.|.++++++.++ +.++.|+.||++.+ ..++ ++|+|.++||++
T Consensus 2 ~l~~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~-~~~~i~~~Pt~~ 76 (101)
T cd02961 2 ELTDDNFDELVK---DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-NDLC-SEYGVRGYPTIK 76 (101)
T ss_pred cccHHHHHHHHh---CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-HHHH-HhCCCCCCCEEE
Confidence 578889999887 66699999999999999999999999999994 23799999999998 9999 999999999999
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 332 FFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 332 ~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
+|++++.....+.| ..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~g-~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEG-PRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCC-CcCHHHHHhhC
Confidence 99888444777777 57899998875
No 62
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.70 E-value=1.1e-16 Score=123.60 Aligned_cols=95 Identities=18% Similarity=0.336 Sum_probs=80.0
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCC---chHHHHHcCCCCCCCeE
Q 018045 257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTI 330 (361)
Q Consensus 257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~---~~~l~~~~~~v~~~Pt~ 330 (361)
++|++.++ ++++++|.||++||++|+.+.|.+ .++++.+++ ++.++.||++.+ ..+++ ++|+|.++||+
T Consensus 2 ~~~~~~~~---~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~-~~~~i~~~Pti 76 (104)
T cd02953 2 AALAQALA---QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALL-KRFGVFGPPTY 76 (104)
T ss_pred HHHHHHHH---cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHH-HHcCCCCCCEE
Confidence 45777776 899999999999999999999998 688888886 799999999873 16888 89999999999
Q ss_pred EEEeC--CCCCeeecCCCCCCHHHHHHHHH
Q 018045 331 LFFPK--HSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 331 ~~~~~--g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
++|++ |+. ...+.| ..+.++|.++|+
T Consensus 77 ~~~~~~~g~~-~~~~~G-~~~~~~l~~~l~ 104 (104)
T cd02953 77 LFYGPGGEPE-PLRLPG-FLTADEFLEALE 104 (104)
T ss_pred EEECCCCCCC-Cccccc-ccCHHHHHHHhC
Confidence 99984 552 555555 799999998874
No 63
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.70 E-value=1.5e-16 Score=121.26 Aligned_cols=95 Identities=24% Similarity=0.399 Sum_probs=79.9
Q ss_pred cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeC
Q 018045 256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 335 (361)
Q Consensus 256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~ 335 (361)
.++|++++... .+++++|+||++||++|+.+.|.++++++.+.. ++.+++||+++. .+++ ++|+|.++||+++|++
T Consensus 2 ~~~~~~~~~~~-~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~-~~~~-~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 2 EEEFEELLKSD-ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEEL-PEIS-EKFEITAVPTFVFFRN 77 (97)
T ss_pred HHHHHHHHhhC-CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccC-HHHH-HhcCCccccEEEEEEC
Confidence 46788877622 259999999999999999999999999999754 799999999999 9999 9999999999999998
Q ss_pred CCCCeeecCCCCCCHHHHHHHH
Q 018045 336 HSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 336 g~~~~~~~~~~~~~~~~l~~~i 357 (361)
|+ .+....| .+.+.|.+.|
T Consensus 78 g~--~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 78 GT--IVDRVSG-ADPKELAKKV 96 (97)
T ss_pred CE--EEEEEeC-CCHHHHHHhh
Confidence 87 4444332 6788887765
No 64
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.69 E-value=1.7e-16 Score=133.55 Aligned_cols=107 Identities=19% Similarity=0.270 Sum_probs=88.8
Q ss_pred CCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045 249 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 327 (361)
Q Consensus 249 ~~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~ 327 (361)
..|.+++. ++|.+.+...+.+.+|||+||++||++|+.|.|.|+++++.+.. +.|++||++.. .++ .+|+|.++
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d~~--~l~-~~f~v~~v 136 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRASAT--GAS-DEFDTDAL 136 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEeccch--hhH-HhCCCCCC
Confidence 56888988 99999886333446999999999999999999999999999964 99999999976 788 89999999
Q ss_pred CeEEEEeCCCCC--e---eecCCCCCCHHHHHHHHHHh
Q 018045 328 PTILFFPKHSSK--P---IKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 328 Pt~~~~~~g~~~--~---~~~~~~~~~~~~l~~~i~~~ 360 (361)
||+++|++|+.. . ....|...+.++|..+|.+.
T Consensus 137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999999852 1 11223467899999998763
No 65
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.69 E-value=3.5e-16 Score=127.42 Aligned_cols=98 Identities=22% Similarity=0.345 Sum_probs=81.1
Q ss_pred cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEEEEe
Q 018045 256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFP 334 (361)
Q Consensus 256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~~~~ 334 (361)
...|++.+. .++++||+|||+||++|+.+.|.++++++.+.+ .+.|+.||++... ..++ ++|+|.++||+++|+
T Consensus 10 ~~~~~~a~~---~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~-~~~~V~~iPt~v~~~ 84 (142)
T cd02950 10 STPPEVALS---NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEI-DRYRVDGIPHFVFLD 84 (142)
T ss_pred cCCHHHHHh---CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHH-HHcCCCCCCEEEEEC
Confidence 356777665 899999999999999999999999999999987 6888888887651 4788 899999999999995
Q ss_pred -CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 335 -KHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 335 -~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+|+. ...+.| ..+.++|.++|+++
T Consensus 85 ~~G~~-v~~~~G-~~~~~~l~~~l~~l 109 (142)
T cd02950 85 REGNE-EGQSIG-LQPKQVLAQNLDAL 109 (142)
T ss_pred CCCCE-EEEEeC-CCCHHHHHHHHHHH
Confidence 5652 334444 78889999999875
No 66
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.68 E-value=1.7e-16 Score=135.84 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=110.3
Q ss_pred cEEEEecchHHHHHH-HHHHHcC----CCceEEEccCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTG----RPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 83 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~----~~i~v~~~dtg~~~--pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~ 83 (361)
+++|++|||+||+++ +++.+.. .++.++|+|+|..+ +++.++++++++.+|++++++..... .+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~- 71 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALA--------PK- 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccc--------cC-
Confidence 589999999999877 8877754 37999999999776 48999999999999999988722100 00
Q ss_pred CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCC--CCcC--CcCCCCCeEEEeeCccC
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEG--LEGGVGSLVKWNPVANV 157 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~--~~~~--~~~~~~~~~~~~Pi~~W 157 (361)
.......+|...+...+.++.. +.+.+++|++++|.. .+..+.+..... .... ......+...++||.+|
T Consensus 72 ---~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~-e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~ 147 (185)
T cd01992 72 ---PGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQA-ETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGI 147 (185)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHH-HHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCC
Confidence 1123445788888888888776 668999999999974 543322221110 0000 00112456789999999
Q ss_pred cHHHHHHHHHhCCCCCCccc
Q 018045 158 KGNDIWNFLRTMDVPINSLH 177 (361)
Q Consensus 158 ~~~dv~~yi~~~~lp~~~lY 177 (361)
++.||++|.++++||+.+-+
T Consensus 148 ~k~eI~~~~~~~~l~~~~~~ 167 (185)
T cd01992 148 TRAEIEAYLRENGLPWWEDP 167 (185)
T ss_pred CHHHHHHHHHHcCCCeEECC
Confidence 99999999999999986655
No 67
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.66 E-value=1e-15 Score=116.63 Aligned_cols=87 Identities=20% Similarity=0.342 Sum_probs=77.9
Q ss_pred CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCC
Q 018045 267 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE 346 (361)
Q Consensus 267 ~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~ 346 (361)
+.+++++|+||++||+.|+.+.|.++++++.+.+ ++.++.+|++++ ++++ ++++|.++|++++|++|+. ...+.|
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~-~~l~-~~~~v~~vPt~~i~~~g~~-v~~~~g- 85 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDED-QEIA-EAAGIMGTPTVQFFKDKEL-VKEISG- 85 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC-HHHH-HHCCCeeccEEEEEECCeE-EEEEeC-
Confidence 4789999999999999999999999999999986 799999999999 9999 9999999999999998863 445555
Q ss_pred CCCHHHHHHHHH
Q 018045 347 RRDVDSLMAFVD 358 (361)
Q Consensus 347 ~~~~~~l~~~i~ 358 (361)
..+.++|.++|+
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 788899998874
No 68
>PTZ00051 thioredoxin; Provisional
Probab=99.66 E-value=6.9e-16 Score=117.74 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=78.4
Q ss_pred ceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 251 LVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 251 v~~l~-~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
|.+++ .++|++++. .+++++|+||++||++|+.+.|.++++++.+.+ +.|+.||++++ ..++ ++|+|.++||
T Consensus 2 v~~i~~~~~~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~-~~~~-~~~~v~~~Pt 74 (98)
T PTZ00051 2 VHIVTSQAEFESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDEL-SEVA-EKENITSMPT 74 (98)
T ss_pred eEEecCHHHHHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcch-HHHH-HHCCCceeeE
Confidence 34454 456777775 889999999999999999999999999998764 99999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHH
Q 018045 330 ILFFPKHSSKPIKYPSERRDVDSLM 354 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~l~ 354 (361)
+++|++|+. ...+.| ...++|.
T Consensus 75 ~~~~~~g~~-~~~~~G--~~~~~~~ 96 (98)
T PTZ00051 75 FKVFKNGSV-VDTLLG--ANDEALK 96 (98)
T ss_pred EEEEeCCeE-EEEEeC--CCHHHhh
Confidence 999999874 344554 4566654
No 69
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.65 E-value=1.1e-15 Score=149.31 Aligned_cols=105 Identities=27% Similarity=0.589 Sum_probs=94.5
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQKEYAKQKLQLGSF 327 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~--~v~~~~vd~~~~~~~l~~~~~~v~~~ 327 (361)
.|.+|+.++|+++++ ++++++|+|||+||++|+.+.|.+.++++.+.+. ++.|+.|||+.+ .++| ++|+|.++
T Consensus 2 ~v~~l~~~~~~~~i~---~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~-~~~~i~~~ 76 (462)
T TIGR01130 2 DVLVLTKDNFDDFIK---SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLA-QKYGVSGY 76 (462)
T ss_pred CceECCHHHHHHHHh---cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHH-HhCCCccc
Confidence 578999999999887 7889999999999999999999999999998752 599999999999 9999 99999999
Q ss_pred CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
||+++|++|+.....|.| .++.++|.+|++++
T Consensus 77 Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNG-PRDADGIVKYMKKQ 108 (462)
T ss_pred cEEEEEeCCccceeEecC-CCCHHHHHHHHHHh
Confidence 999999988842467777 68999999999864
No 70
>PTZ00102 disulphide isomerase; Provisional
Probab=99.65 E-value=1.8e-15 Score=148.36 Aligned_cols=108 Identities=26% Similarity=0.544 Sum_probs=96.4
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGS 326 (361)
Q Consensus 248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v~~ 326 (361)
...|..|+.++|++.+. +++++++|.|||+||++|+.+.|.|+++++.+++ ..+.++.+|++.+ ..++ +++++++
T Consensus 356 ~~~v~~l~~~~f~~~v~--~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-~~~~-~~~~v~~ 431 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVF--KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-ETPL-EEFSWSA 431 (477)
T ss_pred CCCeEEecccchHHHHh--cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-ccch-hcCCCcc
Confidence 45799999999999753 4789999999999999999999999999999876 3699999999999 8888 8999999
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+||+++|++|++.+..+.| .++.++|.+||++.
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G-~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEG-ERTVEGFKEFVNKH 464 (477)
T ss_pred cCeEEEEECCCcceeEecC-cCCHHHHHHHHHHc
Confidence 9999999998865678887 79999999999864
No 71
>PTZ00102 disulphide isomerase; Provisional
Probab=99.65 E-value=1.4e-15 Score=149.20 Aligned_cols=104 Identities=27% Similarity=0.597 Sum_probs=94.7
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGS 326 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~ 326 (361)
..+..|+.++|+++++ +++.++|.|||+||++|+.+.|.|+++++.++. .++.|+.|||+.+ .++| ++|+|.+
T Consensus 32 ~~v~~l~~~~f~~~i~---~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~-~~~~i~~ 106 (477)
T PTZ00102 32 EHVTVLTDSTFDKFIT---ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELA-QEFGVRG 106 (477)
T ss_pred CCcEEcchhhHHHHHh---cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHH-HhcCCCc
Confidence 4689999999999887 788999999999999999999999999988864 3699999999999 9999 9999999
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+||+++|++|+ .+.|.| .++.+.|.+|++++
T Consensus 107 ~Pt~~~~~~g~--~~~y~g-~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 107 YPTIKFFNKGN--PVNYSG-GRTADGIVSWIKKL 137 (477)
T ss_pred ccEEEEEECCc--eEEecC-CCCHHHHHHHHHHh
Confidence 99999999997 458887 69999999999875
No 72
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.65 E-value=4.1e-16 Score=135.79 Aligned_cols=101 Identities=26% Similarity=0.523 Sum_probs=91.9
Q ss_pred cCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC----CCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG----NGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 254 l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~----~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
++..|++.++. .+..|+|.|||+||+.++.++|+|++.|+.++. ..+.+++|||+++ .+++ .+|.|..|||
T Consensus 1 lt~~N~~~il~---s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia-~ky~I~KyPT 75 (375)
T KOG0912|consen 1 LTSENIDSILD---SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIA-DKYHINKYPT 75 (375)
T ss_pred CccccHHHhhc---cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHh-hhhccccCce
Confidence 46678888887 899999999999999999999999999998865 3799999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+.+|.+|......|.| .++++.|.+||++.
T Consensus 76 lKvfrnG~~~~rEYRg-~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 76 LKVFRNGEMMKREYRG-QRSVEALIEFIEKQ 105 (375)
T ss_pred eeeeeccchhhhhhcc-chhHHHHHHHHHHH
Confidence 9999999976668888 79999999999864
No 73
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.64 E-value=2.1e-15 Score=119.33 Aligned_cols=101 Identities=8% Similarity=0.148 Sum_probs=79.7
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------hHHHH
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------KEYAK 319 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------~~l~~ 319 (361)
.+..++.++|.+.++ +++.++|+|+++|||+|+.+.|.++++++.. ++.|..||++.+. .++.
T Consensus 7 ~~~~it~~~~~~~i~---~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~- 79 (122)
T TIGR01295 7 GLEVTTVVRALEALD---KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR- 79 (122)
T ss_pred cceecCHHHHHHHHH---cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-
Confidence 456778788888776 8889999999999999999999999999983 4678888888541 2455
Q ss_pred HcCC----CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045 320 QKLQ----LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 320 ~~~~----v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
++|+ |.++||+++|++|+. .....|+..+.++|.+|+.
T Consensus 80 ~~~~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 80 SRFGIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHcCCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHhh
Confidence 5555 556999999999985 3344454678999999874
No 74
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.64 E-value=2.1e-15 Score=118.03 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=76.7
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCC-eeecCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSK-PIKYPSE 346 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~-~~~~~~~ 346 (361)
.+..++|.||++||++|+.+.|.++++++.+ + .+.|..||++++ ++++ ++|+|.++||+++|++|+.. .+.+.|
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~~-~~l~-~~~~v~~vPt~~i~~~g~~~~~~~~~G- 95 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDED-KEKA-EKYGVERVPTTIFLQDGGKDGGIRYYG- 95 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCcC-HHHH-HHcCCCcCCEEEEEeCCeecceEEEEe-
Confidence 6778999999999999999999999999887 4 599999999999 9999 99999999999999886532 345666
Q ss_pred CCCHHHHHHHHHHh
Q 018045 347 RRDVDSLMAFVDAL 360 (361)
Q Consensus 347 ~~~~~~l~~~i~~~ 360 (361)
..+..+|.+||+.+
T Consensus 96 ~~~~~el~~~i~~i 109 (113)
T cd02975 96 LPAGYEFASLIEDI 109 (113)
T ss_pred cCchHHHHHHHHHH
Confidence 67788999999875
No 75
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.63 E-value=1.9e-15 Score=129.76 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=107.4
Q ss_pred cEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 83 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~~--pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~ 83 (361)
+|+|++|||+||+++ +++.+. +.++.++++|+|... ++..+.++++++.+|+++.++.-...... ...+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~- 76 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALA---KGKK- 76 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhc---cccC-
Confidence 589999999999877 777663 557899999999753 66789999999999999887754322110 1111
Q ss_pred CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCC-----CCcCCcCCCCCeEEEeeCcc
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP-----VFEGLEGGVGSLVKWNPVAN 156 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~-----~~~~~~~~~~~~~~~~Pi~~ 156 (361)
......|...+..-+.++.+ +++.+++|++++|.. .+..+....... .........++...++||.+
T Consensus 77 -----~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~-e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~ 150 (189)
T TIGR02432 77 -----KNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQA-ETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLG 150 (189)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHH-HHHHHHHHcCCCcccccCCccccccCCCCEEECCCCC
Confidence 12334467777777777766 577999999999974 432222111110 00000000114668999999
Q ss_pred CcHHHHHHHHHhCCCCCCccc
Q 018045 157 VKGNDIWNFLRTMDVPINSLH 177 (361)
Q Consensus 157 W~~~dv~~yi~~~~lp~~~lY 177 (361)
|+++||++|++.++||+..-+
T Consensus 151 ~~k~ei~~~~~~~~lp~~~~~ 171 (189)
T TIGR02432 151 ISKSEIEEYLKENGLPWFEDE 171 (189)
T ss_pred CCHHHHHHHHHHcCCCeeeCC
Confidence 999999999999999987665
No 76
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.63 E-value=1.5e-15 Score=129.89 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=105.2
Q ss_pred cEEEEecchHHHHHH-HHHHHc------CCCceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 018045 11 DIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK 81 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~------~~~i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~ 81 (361)
+|+|++|||+||+++ +++.+. +.++.++|+|+|.. .++..++++++++++|++++++...... ......
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~ 78 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEY--TDDIEV 78 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhc--chhhhh
Confidence 589999999999877 777664 33678899999975 3788999999999999999887654211 000000
Q ss_pred CCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceec------CCCCcCCcCCCCCeEEEee
Q 018045 82 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV------DPVFEGLEGGVGSLVKWNP 153 (361)
Q Consensus 82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~------~~~~~~~~~~~~~~~~~~P 153 (361)
.. .........|...+...+.+..+ +.+++++|++++|.. ....+..... .+... .....++...++|
T Consensus 79 ~~--~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~-et~l~~~~~g~~~~~~~~~~~-~~~~~~~~~iirP 154 (185)
T cd01993 79 KK--RGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEA-ETLLMNLLRGGILRLMRPGPI-LYLDEGDVTRIRP 154 (185)
T ss_pred hc--cCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHH-HHHHHHHHhcCHHHHcCCCCc-cccCCCCceEEee
Confidence 00 01112334466666667766665 567999999999964 3221111100 00000 0001134567899
Q ss_pred CccCcHHHHHHHHHhCCCCCCcc
Q 018045 154 VANVKGNDIWNFLRTMDVPINSL 176 (361)
Q Consensus 154 i~~W~~~dv~~yi~~~~lp~~~l 176 (361)
|.+|++.||++|++.++||+.+-
T Consensus 155 L~~~~k~eI~~~~~~~~l~~~~d 177 (185)
T cd01993 155 LVYVREKEIVLYAELNGLPFVEE 177 (185)
T ss_pred cccCCHHHHHHHHHHcCCCcccC
Confidence 99999999999999999988554
No 77
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.62 E-value=2.6e-15 Score=127.96 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=85.1
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
+.|.+++..+|...+...+.+.+|||+||++||++|+.|.|.|+++|+.|.. +.|++||++.. . .+|+|.++|
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad~~----~-~~~~i~~lP 154 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIISTQC----I-PNYPDKNLP 154 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhHHh----H-hhCCCCCCC
Confidence 5689999999987665333456899999999999999999999999999965 99999999754 5 689999999
Q ss_pred eEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHH
Q 018045 329 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 329 t~~~~~~g~~~-----~~~~~~~~~~~~~l~~~i~~ 359 (361)
|+++|++|+.. .....|...+.++|..+|.+
T Consensus 155 Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 155 TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999852 11222336789999988865
No 78
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.60 E-value=1.4e-15 Score=132.23 Aligned_cols=89 Identities=30% Similarity=0.651 Sum_probs=82.0
Q ss_pred CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecC
Q 018045 267 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYP 344 (361)
Q Consensus 267 ~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~ 344 (361)
+.+..|+|.||||||.+|+++.|+|.++.-.+++ ..++++++||+.. +.++ .+|+|++|||+.+|+++. .+.|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-~aiA-nefgiqGYPTIk~~kgd~--a~dYR 116 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-PAIA-NEFGIQGYPTIKFFKGDH--AIDYR 116 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-hhhH-hhhccCCCceEEEecCCe--eeecC
Confidence 3688999999999999999999999999998887 3799999999999 9999 999999999999999988 89999
Q ss_pred CCCCCHHHHHHHHHHh
Q 018045 345 SERRDVDSLMAFVDAL 360 (361)
Q Consensus 345 ~~~~~~~~l~~~i~~~ 360 (361)
| .++.+.|++|..+.
T Consensus 117 G-~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 117 G-GREKDAIIEFAHRC 131 (468)
T ss_pred C-CccHHHHHHHHHhc
Confidence 8 59999999998653
No 79
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.4e-15 Score=126.77 Aligned_cols=102 Identities=20% Similarity=0.313 Sum_probs=85.6
Q ss_pred ceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 251 LVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 251 v~~l~-~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
|+.++ +.+|+.-+. ....+.++|+|+|+||+||+...|.|+.++.+|++ ..|++||+|+. +..+ ..++|...||
T Consensus 3 Vi~v~~d~df~~~ls-~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~c-~~ta-a~~gV~amPT 77 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELS-AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDEC-RGTA-ATNGVNAMPT 77 (288)
T ss_pred eEEecCcHHHHHhhh-ccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHHh-hchh-hhcCcccCce
Confidence 45554 456777554 33467999999999999999999999999999976 89999999999 8989 8999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+++|.+|.+ ...+.| .++.-|++.+.++
T Consensus 78 Fiff~ng~k-id~~qG--Ad~~gLe~kv~~~ 105 (288)
T KOG0908|consen 78 FIFFRNGVK-IDQIQG--ADASGLEEKVAKY 105 (288)
T ss_pred EEEEecCeE-eeeecC--CCHHHHHHHHHHH
Confidence 999999985 555665 6788888887654
No 80
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.59 E-value=1.3e-14 Score=115.99 Aligned_cols=91 Identities=22% Similarity=0.487 Sum_probs=74.8
Q ss_pred CCC-CcEEEEEECCCChhHHhhHHHHH---HHHHHhcCCCeEEEEEEcCCC------------chHHHHHcCCCCCCCeE
Q 018045 267 HRQ-EPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGD------------QKEYAKQKLQLGSFPTI 330 (361)
Q Consensus 267 ~~~-~~vlv~F~a~wC~~C~~~~p~~~---~la~~~~~~~v~~~~vd~~~~------------~~~l~~~~~~v~~~Pt~ 330 (361)
+++ ++++|.|||+||++|+.+.|.+. .+.+.+++ ++.++.||++.+ ..+++ .+|+|.++||+
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~-~~~~v~~~Pt~ 88 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELA-RKYRVRFTPTV 88 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHH-HHcCCccccEE
Confidence 378 99999999999999999999885 67677765 789999999863 26888 89999999999
Q ss_pred EEEeCC-CCCeeecCCCCCCHHHHHHHHHHh
Q 018045 331 LFFPKH-SSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 331 ~~~~~g-~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
++|+++ ++......| ..+.+.+.++|+.+
T Consensus 89 ~~~~~~gg~~~~~~~G-~~~~~~~~~~l~~~ 118 (125)
T cd02951 89 IFLDPEGGKEIARLPG-YLPPDEFLAYLEYV 118 (125)
T ss_pred EEEcCCCCceeEEecC-CCCHHHHHHHHHHH
Confidence 999875 443445555 78889999998875
No 81
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.59 E-value=9.9e-15 Score=113.97 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=75.7
Q ss_pred cccHHHHHhhcCCCCcEEEEEEC-------CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------chHHHHHcC
Q 018045 256 RTGMENLARLDHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQKL 322 (361)
Q Consensus 256 ~~~f~~~~~~~~~~~~vlv~F~a-------~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------~~~l~~~~~ 322 (361)
.++|.+.+. ..++++++|.||| +||++|+.+.|.++++++.+++ ++.|++||+++. +.++. .++
T Consensus 9 ~~~f~~~i~-~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~-~~~ 85 (119)
T cd02952 9 YEEFLKLLK-SHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFR-TDP 85 (119)
T ss_pred HHHHHHHHH-hcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhH-hcc
Confidence 355666654 1237899999999 9999999999999999999986 699999999763 15888 899
Q ss_pred CCC-CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 323 QLG-SFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 323 ~v~-~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
+|. ++||+++|++|++ .+... =.+.+.+..|+
T Consensus 86 ~I~~~iPT~~~~~~~~~-l~~~~--c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQR-LVEDE--CLQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCce-ecchh--hcCHHHHHHhh
Confidence 998 9999999987763 33333 25677776665
No 82
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.57 E-value=2.5e-14 Score=107.09 Aligned_cols=92 Identities=29% Similarity=0.503 Sum_probs=79.2
Q ss_pred cHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCC
Q 018045 258 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 258 ~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
+|++.++ .+++++|.||++||++|+.+.+.++++++. .+ ++.|+.+|++.+ .+++ ++|++.++|++++|.+|+
T Consensus 2 ~~~~~~~---~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~-~~~~-~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 2 EFEELIK---SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDEN-PELA-EEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred chHHHHh---cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCC-hhHH-HhcCcccccEEEEEECCE
Confidence 5676665 569999999999999999999999999988 33 699999999998 8999 999999999999999887
Q ss_pred CCeeecCCCCCCHHHHHHHHH
Q 018045 338 SKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~i~ 358 (361)
. ...+.| ..+.++|.++|+
T Consensus 75 ~-~~~~~g-~~~~~~l~~~i~ 93 (93)
T cd02947 75 E-VDRVVG-ADPKEELEEFLE 93 (93)
T ss_pred E-EEEEec-CCCHHHHHHHhC
Confidence 4 445555 577899998873
No 83
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.56 E-value=3.3e-14 Score=109.46 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=79.3
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC--CCCeEEEEeC--CCCCeeec
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--SFPTILFFPK--HSSKPIKY 343 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~--~~Pt~~~~~~--g~~~~~~~ 343 (361)
.++++++.|+++||++|+.+.|.++++|+++++ .+.|+.||++++ ..++ +.|+|. ++|+++++++ |+ ...+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~-~~~~-~~~~i~~~~~P~~~~~~~~~~~--k~~~ 85 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDF-GRHL-EYFGLKEEDLPVIAIINLSDGK--KYLM 85 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhh-HHHH-HHcCCChhhCCEEEEEeccccc--ccCC
Confidence 368999999999999999999999999999998 899999999999 8999 999999 9999999988 54 4556
Q ss_pred CCCCCCHHHHHHHHHHh
Q 018045 344 PSERRDVDSLMAFVDAL 360 (361)
Q Consensus 344 ~~~~~~~~~l~~~i~~~ 360 (361)
.++..+.++|.+||+++
T Consensus 86 ~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 86 PEEELTAESLEEFVEDF 102 (103)
T ss_pred CccccCHHHHHHHHHhh
Confidence 55556999999999876
No 84
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.53 E-value=7.2e-14 Score=136.43 Aligned_cols=106 Identities=25% Similarity=0.562 Sum_probs=93.1
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-C-CeEEEEEEcCCCchHHHHHcCCCC
Q 018045 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-N-GVKVGKFRADGDQKEYAKQKLQLG 325 (361)
Q Consensus 248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~-~v~~~~vd~~~~~~~l~~~~~~v~ 325 (361)
...|..|+.++|++++. +.+++++|.|||+||++|+.+.|.++++++.+++ . .+.|+++|++.+ ++. . ++|.
T Consensus 345 ~~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~-~-~~i~ 418 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVL--DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVP-P-FEVE 418 (462)
T ss_pred CCccEEeeCcCHHHHhc--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccC-C-CCcc
Confidence 35788999999999874 4689999999999999999999999999999987 3 799999999987 566 5 9999
Q ss_pred CCCeEEEEeCCCC-CeeecCCCCCCHHHHHHHHHHh
Q 018045 326 SFPTILFFPKHSS-KPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 326 ~~Pt~~~~~~g~~-~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
++||+++|++|+. .+..+.| ..+.++|.+||++.
T Consensus 419 ~~Pt~~~~~~~~~~~~~~~~g-~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 419 GFPTIKFVPAGKKSEPVPYDG-DRTLEDFSKFIAKH 453 (462)
T ss_pred ccCEEEEEeCCCCcCceEecC-cCCHHHHHHHHHhc
Confidence 9999999998876 3678887 69999999999864
No 85
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.50 E-value=1.9e-13 Score=122.79 Aligned_cols=163 Identities=18% Similarity=0.246 Sum_probs=104.2
Q ss_pred HHHhHh-----CCcEEEEecchHHHHHH-HHHHHc------CCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcC
Q 018045 3 RALEKF-----GNDIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFP 69 (361)
Q Consensus 3 ~~~~~~-----~~~i~vs~SGGKDS~~l-~l~~~~------~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p 69 (361)
.++++| +++|+|++|||+||++| |++.+. +.++.++++|+|.. +++ ++++++++++|+++.++..
T Consensus 18 ~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~--~~~~~~~~~lgI~~~v~~~ 95 (258)
T PRK10696 18 QAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE--HVLPEYLESLGVPYHIEEQ 95 (258)
T ss_pred HHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH--HHHHHHHHHhCCCEEEEEe
Confidence 455555 47899999999999877 777552 23578899999953 333 4689999999999988764
Q ss_pred ChHHHHHHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCC--CCcCC-cCC
Q 018045 70 DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEGL-EGG 144 (361)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~--~~~~~-~~~ 144 (361)
+.... .... .+ .....+.-|...+...+.++.+ +.+.+++|+.+||.. ....+..+.... ..... ...
T Consensus 96 ~~~~~---~~~~-~~--~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~-Et~l~nl~rg~~l~~m~~~~~~~ 168 (258)
T PRK10696 96 DTYSI---VKEK-IP--EGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL-ETLFLNMFYGGKLKAMPPKLLSD 168 (258)
T ss_pred cchhh---hhhh-hc--cCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH-HHHHHHHHhCCcccccCCeeecC
Confidence 42211 0000 00 0012233367777777777766 678999999999964 321111110000 00000 001
Q ss_pred CCCeEEEeeCccCcHHHHHHHHHhCCCCCC
Q 018045 145 VGSLVKWNPVANVKGNDIWNFLRTMDVPIN 174 (361)
Q Consensus 145 ~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~ 174 (361)
.+++..++||++++++||..|...++||+.
T Consensus 169 ~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~ 198 (258)
T PRK10696 169 DGKHIVIRPLAYVAEKDIIKFAEAKEFPII 198 (258)
T ss_pred CCceeEEecCccCCHHHHHHHHHHcCCCEe
Confidence 134568999999999999999999999874
No 86
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.48 E-value=2.1e-13 Score=116.91 Aligned_cols=147 Identities=18% Similarity=0.299 Sum_probs=107.5
Q ss_pred HHHhHhCCcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045 3 RALEKFGNDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 80 (361)
Q Consensus 3 ~~~~~~~~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~ 80 (361)
.+++.. .+++||||||.||++| .++.+ +|.++.++++|+.+-++..++-+..+++++|++..++...... .++.
T Consensus 12 ~~ik~~-~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~-~~~~-- 87 (269)
T COG1606 12 KAIKEK-KKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD-PEFK-- 87 (269)
T ss_pred HHHhhc-CeEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc-hhhc--
Confidence 445554 4899999999999888 67755 6889999999999999989999999999999999887443221 1111
Q ss_pred cCCCCCCccchhchhhccccHHHH----HHHc-cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045 81 KGLFSFYEDGHQECCRVRKVRPLR----RALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA 155 (361)
Q Consensus 81 ~~~~~~~~~~~~~cc~~~K~~pl~----~~~~-~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~ 155 (361)
.++..-|+.+|...+. .+.+ |+++++.|++++|....|....+..... -..|++
T Consensus 88 --------~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RPG~rA~kE~g-------------i~sPl~ 146 (269)
T COG1606 88 --------ENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRPGLRALKELG-------------IRSPLA 146 (269)
T ss_pred --------cCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCcchhhHHhcC-------------CCChHH
Confidence 1222345555544333 2332 7999999999999976777666543321 245777
Q ss_pred c--CcHHHHHHHHHhCCCCCC
Q 018045 156 N--VKGNDIWNFLRTMDVPIN 174 (361)
Q Consensus 156 ~--W~~~dv~~yi~~~~lp~~ 174 (361)
+ .+.++|..+.+..|+++.
T Consensus 147 e~gitk~eIre~a~~lgl~~~ 167 (269)
T COG1606 147 EFGITKKEIREIAKSLGLPTW 167 (269)
T ss_pred HhCCcHHHHHHHHHHcCCCcc
Confidence 5 599999999999999887
No 87
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.48 E-value=5.8e-14 Score=119.62 Aligned_cols=152 Identities=18% Similarity=0.277 Sum_probs=94.6
Q ss_pred cEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 83 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~ 83 (361)
+|+||+||||||++| +++.+. +.++.++++|.|.. ..+-.++++++++.+|+++.+...+. ..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~-------~~--- 70 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDE-------DR--- 70 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--C-------HC---
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeee-------ee---
Confidence 589999999999877 777664 44788999999964 33566899999999999998875543 11
Q ss_pred CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCC--CcCC--cCCCCCeEEEeeCccC
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPV--FEGL--EGGVGSLVKWNPVANV 157 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~--~~~~--~~~~~~~~~~~Pi~~W 157 (361)
........||+..+..-+.+... +.+.+++|+.+||-. .-..+........ ..+. .....++..++||++.
T Consensus 71 --~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~-ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~~ 147 (182)
T PF01171_consen 71 --KKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQA-ETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLYV 147 (182)
T ss_dssp --CTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHH-HHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGCS
T ss_pred --cccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccH-HHHHHHHHHhccchhhccccccccccCcccCCcchhC
Confidence 11224556777777677777776 557999999999964 3332322221110 0000 0001346789999999
Q ss_pred cHHHHHHHHHhCCCCCCc
Q 018045 158 KGNDIWNFLRTMDVPINS 175 (361)
Q Consensus 158 ~~~dv~~yi~~~~lp~~~ 175 (361)
+++||..|...++||+..
T Consensus 148 ~k~ei~~~~~~~~i~~~~ 165 (182)
T PF01171_consen 148 SKDEIRAYAKENGIPYVE 165 (182)
T ss_dssp -HHHHHHHHHHTT-SSBS
T ss_pred CHHHHHHHHHHCCCcEEE
Confidence 999999999999999854
No 88
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.47 E-value=5.2e-13 Score=98.17 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=70.3
Q ss_pred EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHH
Q 018045 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD 351 (361)
Q Consensus 272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~ 351 (361)
.+..||++||++|+.+.|.++++++.++. .+.+..||++++ ++++ ++|++.++||+++ +|+ ..+.| ..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~vPt~~~--~g~---~~~~G-~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN-PQKA-MEYGIMAVPAIVI--NGD---VEFIG-APTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC-HHHH-HHcCCccCCEEEE--CCE---EEEec-CCCHH
Confidence 47799999999999999999999999976 699999999999 9999 8999999999986 565 35556 67899
Q ss_pred HHHHHHHHh
Q 018045 352 SLMAFVDAL 360 (361)
Q Consensus 352 ~l~~~i~~~ 360 (361)
+|.++|+++
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999999875
No 89
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.44 E-value=2.7e-13 Score=106.55 Aligned_cols=98 Identities=14% Similarity=0.323 Sum_probs=67.3
Q ss_pred cHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC--CCeEEEEe
Q 018045 258 GMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS--FPTILFFP 334 (361)
Q Consensus 258 ~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~--~Pt~~~~~ 334 (361)
++++.++. ..+++++||.|||+||++|+.|.|.+.+....... ...|+.||++.+...+. ..|++.+ +||+++|+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~-~~~~~~g~~vPt~~f~~ 84 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKD-EEFSPDGGYIPRILFLD 84 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchh-hhcccCCCccceEEEEC
Confidence 34444432 23689999999999999999999999998776544 45666677776622455 6889986 99999996
Q ss_pred -CCCCCe--eecCCCCCCHHHHHHHHH
Q 018045 335 -KHSSKP--IKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 335 -~g~~~~--~~~~~~~~~~~~l~~~i~ 358 (361)
+|+... ....| ..+.+.+..+|+
T Consensus 85 ~~Gk~~~~~~~~~~-~~~~~~f~~~~~ 110 (117)
T cd02959 85 PSGDVHPEIINKKG-NPNYKYFYSSAA 110 (117)
T ss_pred CCCCCchhhccCCC-CccccccCCCHH
Confidence 776432 23333 355555544444
No 90
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.44 E-value=1.6e-12 Score=116.41 Aligned_cols=148 Identities=18% Similarity=0.294 Sum_probs=102.0
Q ss_pred HHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045 2 DRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 80 (361)
Q Consensus 2 ~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~ 80 (361)
+..++.+ ++++|+||||.||+++ +++.+.+.++.++++|.+...++..+.++++++++|++++++.-+.. ... ...
T Consensus 6 ~~~l~~~-~~vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~-~~~-~~~ 82 (252)
T TIGR00268 6 RNFLKEF-KKVLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDKM-INP-FRA 82 (252)
T ss_pred HHHHHhc-CCEEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHH-HHH-HHh
Confidence 4455665 5899999999999877 88888888899999999877778889999999999999988754321 111 111
Q ss_pred cCCCCCCccchhchhhccccHHH---HHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045 81 KGLFSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA 155 (361)
Q Consensus 81 ~~~~~~~~~~~~~cc~~~K~~pl---~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~ 155 (361)
. .. .-|..+|...+ .+..+ +.+++++|+.++|-...|..+...... + -.+|+.
T Consensus 83 n--------~~-~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~~~-----------~--~~~PL~ 140 (252)
T TIGR00268 83 N--------VE-ERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVKEF-----------N--GVSPWA 140 (252)
T ss_pred C--------CC-cccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHHHHHHc-----------C--CCCcch
Confidence 1 11 12444444333 33333 567999999999864344333222111 1 138997
Q ss_pred c--CcHHHHHHHHHhCCCCCC
Q 018045 156 N--VKGNDIWNFLRTMDVPIN 174 (361)
Q Consensus 156 ~--W~~~dv~~yi~~~~lp~~ 174 (361)
+ ++.+||.+|.++.|||+.
T Consensus 141 ~~~l~K~eIr~la~~~gl~~~ 161 (252)
T TIGR00268 141 EFGITKKEIREIAKSLGISFP 161 (252)
T ss_pred hcCCCHHHHHHHHHHcCCCcc
Confidence 6 799999999999999864
No 91
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.43 E-value=1.1e-12 Score=113.67 Aligned_cols=142 Identities=19% Similarity=0.257 Sum_probs=100.3
Q ss_pred EEEEecchHHHHHH-HHHHHcCC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 018045 12 IAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 89 (361)
Q Consensus 12 i~vs~SGGKDS~~l-~l~~~~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~ 89 (361)
|+|++|||+||+++ +++.+.+. ++.++++|+|...++..++++++++++|++++++..+.... ....... .
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~-~~~~~~~------~ 73 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELDD-PEFAKNP------P 73 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccc-HHHhcCC------C
Confidence 58999999999877 88877543 78899999998788999999999999999998876542111 1111111 1
Q ss_pred chhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc--cCcHHHHHHH
Q 018045 90 GHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA--NVKGNDIWNF 165 (361)
Q Consensus 90 ~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~--~W~~~dv~~y 165 (361)
.....|.......+.+..+ +.+++++|+..+|....|..+... . ...-++||. .++..||.+|
T Consensus 74 ~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~~~~~~--~-----------~~~iirPL~~~~~~K~ei~~~ 140 (202)
T cd01990 74 DRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRPGLKAL--R-----------ELGVRSPLAEAGLGKAEIREL 140 (202)
T ss_pred CccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccChHHHHH--H-----------HcCCcCchhhcCCCHHHHHHH
Confidence 2223355555666666555 567999999999864222221110 0 122589999 5999999999
Q ss_pred HHhCCCCC
Q 018045 166 LRTMDVPI 173 (361)
Q Consensus 166 i~~~~lp~ 173 (361)
.++.|||+
T Consensus 141 a~~~gl~~ 148 (202)
T cd01990 141 ARELGLPT 148 (202)
T ss_pred HHHcCCCC
Confidence 99999988
No 92
>PTZ00062 glutaredoxin; Provisional
Probab=99.41 E-value=1.4e-12 Score=111.54 Aligned_cols=89 Identities=6% Similarity=0.087 Sum_probs=73.2
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045 255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 334 (361)
Q Consensus 255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~ 334 (361)
+.++|+++++ ...+.++++|+|+||++|+.|.|.+.++++++++ +.|+.||.+ |+|.++||+++|+
T Consensus 5 ~~ee~~~~i~--~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d----------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 5 KKEEKDKLIE--SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA----------DANNEYGVFEFYQ 70 (204)
T ss_pred CHHHHHHHHh--cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc----------cCcccceEEEEEE
Confidence 4567777765 1248899999999999999999999999999965 999999855 7899999999999
Q ss_pred CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 335 KHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 335 ~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+|+. .-.+.| .++.+|..+++++
T Consensus 71 ~g~~-i~r~~G--~~~~~~~~~~~~~ 93 (204)
T PTZ00062 71 NSQL-INSLEG--CNTSTLVSFIRGW 93 (204)
T ss_pred CCEE-EeeeeC--CCHHHHHHHHHHH
Confidence 9984 334444 6788888888764
No 93
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=6.5e-13 Score=122.28 Aligned_cols=154 Identities=15% Similarity=0.165 Sum_probs=108.3
Q ss_pred CcEEEEecchHHHHHH-HHHHHcC--CCceEEEccCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLF 84 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~--~~i~v~~~dtg~~~--pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~ 84 (361)
++|+||+||||||++| +++.+.. .++.++++|.|..- ..-.++++.+++.+|+++++.+-....... ..
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~- 95 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTDDLGRE-----TL- 95 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEEEEeecccc-----cc-
Confidence 6999999999999877 8888876 47889999999654 677889999999999977765433221100 00
Q ss_pred CCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCC-----CcCCcCCCCCe-EEEeeCcc
Q 018045 85 SFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPV-----FEGLEGGVGSL-VKWNPVAN 156 (361)
Q Consensus 85 ~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~-----~~~~~~~~~~~-~~~~Pi~~ 156 (361)
+..+.+.-|...+..-+.+... |.+.++||+.+||.. .-..++....+.. ..... ...+. ..++||+.
T Consensus 96 --~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~-et~lm~l~~g~~~~~l~~~~~~~-~~~~~~~~iRPL~~ 171 (298)
T COG0037 96 --DGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA-ETFLMNLLRGSGLRGLRGMPPKR-PFEGGLLIIRPLLY 171 (298)
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH-HHHHHHHHcCcHhhHHhhCCccc-ccCCCCeeeeeccc
Confidence 0113444588888888888887 568999999999975 3333333322210 00000 11222 68999999
Q ss_pred CcHHHHHHHHHhCCCCC
Q 018045 157 VKGNDIWNFLRTMDVPI 173 (361)
Q Consensus 157 W~~~dv~~yi~~~~lp~ 173 (361)
+++.+|..|...++||+
T Consensus 172 ~~~~ei~~~~~~~~l~~ 188 (298)
T COG0037 172 VREKEIELYAKEKGLPY 188 (298)
T ss_pred CCHHHHHHHHHHcCCCE
Confidence 99999999999999976
No 94
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.40 E-value=7.5e-13 Score=115.79 Aligned_cols=89 Identities=21% Similarity=0.332 Sum_probs=72.3
Q ss_pred CCcEEEEEEC---CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCC
Q 018045 269 QEPWLVVLYA---PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS 345 (361)
Q Consensus 269 ~~~vlv~F~a---~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~ 345 (361)
+...++.|++ +||++|+.+.|.++++++.+.+-.+.++.+|.+++ ++++ ++|+|.++||+++|++|+.....+.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-~~l~-~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-KEEA-EKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-HHHH-HHcCCCccCEEEEEeCCeeeEEEEee
Confidence 4455666888 99999999999999999998542355677777788 9999 99999999999999999852246666
Q ss_pred CCCCHHHHHHHHHHh
Q 018045 346 ERRDVDSLMAFVDAL 360 (361)
Q Consensus 346 ~~~~~~~l~~~i~~~ 360 (361)
..+.++|.+||+.+
T Consensus 97 -~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 97 -IPAGYEFAALIEDI 110 (215)
T ss_pred -cCCHHHHHHHHHHH
Confidence 67888999998764
No 95
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.7e-12 Score=122.17 Aligned_cols=101 Identities=34% Similarity=0.691 Sum_probs=87.5
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE
Q 018045 252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331 (361)
Q Consensus 252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~ 331 (361)
..++..+|..... ..+++++|.||+|||++|+.+.|.|.+++..+++ .+.++.|||+.+ .++| ++|+|.++||+.
T Consensus 32 ~~~~~~~~~~~~~--~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~-~~~~-~~y~i~gfPtl~ 106 (383)
T KOG0191|consen 32 SELTLDSFFDFLL--KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEH-KDLC-EKYGIQGFPTLK 106 (383)
T ss_pred hhhhccccHHHhh--ccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhh-HHHH-HhcCCccCcEEE
Confidence 3344444444332 3789999999999999999999999999999998 899999999999 9999 999999999999
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 332 FFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 332 ~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
+|.+| ..++.+.+ ..+.+.+.+|+.+
T Consensus 107 ~f~~~-~~~~~~~~-~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 107 VFRPG-KKPIDYSG-PRNAESLAEFLIK 132 (383)
T ss_pred EEcCC-CceeeccC-cccHHHHHHHHHH
Confidence 99999 44899988 7999999999864
No 96
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.37 E-value=3.6e-12 Score=100.68 Aligned_cols=99 Identities=16% Similarity=0.266 Sum_probs=71.9
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCchHHHHH--------cCC
Q 018045 255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQ--------KLQ 323 (361)
Q Consensus 255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~--------~~~ 323 (361)
+++.+++..+ ++|+++|+|+|+||++|+.|.+.. .++++.+.. ++.+++||.++. +++. + .|+
T Consensus 4 ~~eal~~Ak~---~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~-~~~~-~~~~~~~~~~~~ 77 (124)
T cd02955 4 GEEAFEKARR---EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREER-PDVD-KIYMNAAQAMTG 77 (124)
T ss_pred CHHHHHHHHH---cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcC-cHHH-HHHHHHHHHhcC
Confidence 4556666665 899999999999999999998743 467777765 699999999987 7665 3 368
Q ss_pred CCCCCeEEEEeCCCCCeeecCCC-----CCCHHHHHHHHHHh
Q 018045 324 LGSFPTILFFPKHSSKPIKYPSE-----RRDVDSLMAFVDAL 360 (361)
Q Consensus 324 v~~~Pt~~~~~~g~~~~~~~~~~-----~~~~~~l~~~i~~~ 360 (361)
+.++|++++++..++ ++...++ ..+...+.++++++
T Consensus 78 ~~G~Pt~vfl~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 78 QGGWPLNVFLTPDLK-PFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCCEEEEECCCCC-EEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 999999999955443 3322221 13445666666654
No 97
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.36 E-value=1.1e-11 Score=112.54 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=106.0
Q ss_pred cEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFY 87 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~~~~~~~~~~~~ 87 (361)
+++|++|||+||+++ +|+.+ .+.++.++|+|+|....+-.+.++++++++|. +++++..+...... ..+... +
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~fl~~---l~~v~n-p 76 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASERFLSA---LKGVTD-P 76 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHHHHHH---hcCCCC-H
Confidence 589999999999877 78877 57789999999998666667889999999886 98887554321211 122211 1
Q ss_pred ccchhchhhccccHHHHHHHc--c-CCEEEEeeeccCCccCccCCC---ceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045 88 EDGHQECCRVRKVRPLRRALK--G-LRAWITGQRKDQSPGTRSEIP---VVQVDPVFEGLEGGVGSLVKWNPVANVKGND 161 (361)
Q Consensus 88 ~~~~~~cc~~~K~~pl~~~~~--~-~~~~i~G~R~~Es~~~R~~~~---~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d 161 (361)
...+..|......-+.+..+ + .+.+++|+.++|-...|.... .+.......+.. .....-.+.||.+++++|
T Consensus 77 -e~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~-a~~~~~vi~PL~~l~K~E 154 (295)
T cd01997 77 -EEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLP-EDMKLKLIEPLRDLFKDE 154 (295)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccccccccccccccccc-hHhhCCcccccccCcHHH
Confidence 11222233344455555554 5 778999999988532232100 000000000000 001223589999999999
Q ss_pred HHHHHHhCCCCCCccccCCCCC
Q 018045 162 IWNFLRTMDVPINSLHSQGYIS 183 (361)
Q Consensus 162 v~~yi~~~~lp~~~lY~~g~~~ 183 (361)
|.++.++.|||..-++++-|+.
T Consensus 155 VR~lar~lGLp~~~~~~~Pfp~ 176 (295)
T cd01997 155 VRELGRELGLPEEIVERHPFPG 176 (295)
T ss_pred HHHHHHHcCCCchhhCCCCCCC
Confidence 9999999999987777775554
No 98
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.35 E-value=5.8e-12 Score=125.06 Aligned_cols=103 Identities=18% Similarity=0.335 Sum_probs=81.8
Q ss_pred CcccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCC
Q 018045 255 NRTGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSF 327 (361)
Q Consensus 255 ~~~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~ 327 (361)
+.+++++.++.. .++|+++|+|||+||++|+.+++.. .++.+.+++ +.++++|+++++ .++. ++|+|.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~--~~~v~vDvt~~~~~~~~l~-~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD--TVLLQADVTANNAEDVALL-KHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC--CEEEEEECCCCChhhHHHH-HHcCCCCC
Confidence 456777766532 3578999999999999999999975 678888854 899999998642 5788 89999999
Q ss_pred CeEEEEe-CCCCC-eeecCCCCCCHHHHHHHHHHhC
Q 018045 328 PTILFFP-KHSSK-PIKYPSERRDVDSLMAFVDALR 361 (361)
Q Consensus 328 Pt~~~~~-~g~~~-~~~~~~~~~~~~~l~~~i~~~~ 361 (361)
||+++|+ +|+.. ...+.| ..+.+++.++|++++
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G-~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTG-FMDAAAFAAHLRQLQ 570 (571)
T ss_pred CEEEEECCCCCCcccccccC-CCCHHHHHHHHHHhc
Confidence 9999996 56632 234455 789999999999864
No 99
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.34 E-value=1.9e-11 Score=103.17 Aligned_cols=92 Identities=15% Similarity=0.339 Sum_probs=76.2
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------chHHHHHcCCCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------QKEYAKQKLQLGS 326 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------~~~l~~~~~~v~~ 326 (361)
.+++++|+||++||++|+...+.+.++++++++.++.++.|+++.. +..++ +.|+|..
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~~ 138 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVI-DAYGVGP 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHH-HHcCCCC
Confidence 5789999999999999999999999999999875688999987643 15677 8999999
Q ss_pred CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045 327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 361 (361)
Q Consensus 327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~ 361 (361)
+|+++++++++.....+.| ..+.+++.+++++++
T Consensus 139 ~P~~~lid~~g~i~~~~~g-~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITG-EMTEEQLEEYLEKIK 172 (173)
T ss_pred cCeEEEECCCCcEEEEEeC-CCCHHHHHHHHHHhc
Confidence 9999999655543445555 789999999999875
No 100
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.33 E-value=6.4e-12 Score=90.84 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=59.1
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 352 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~ 352 (361)
.|.||++||++|+.+.|.++++++++.. .+.|+.|| + .+.+ .+|++.++||+++ +|+ .. +.|...+.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~---~-~~~a-~~~~v~~vPti~i--~G~--~~-~~G~~~~~~~ 70 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT---D-MNEI-LEAGVTATPGVAV--DGE--LV-IMGKIPSKEE 70 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC---C-HHHH-HHcCCCcCCEEEE--CCE--EE-EEeccCCHHH
Confidence 3789999999999999999999999976 68887777 2 4446 7899999999999 776 33 5552345678
Q ss_pred HHHHH
Q 018045 353 LMAFV 357 (361)
Q Consensus 353 l~~~i 357 (361)
|.++|
T Consensus 71 l~~~l 75 (76)
T TIGR00412 71 IKEIL 75 (76)
T ss_pred HHHHh
Confidence 87776
No 101
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.33 E-value=1.5e-11 Score=104.31 Aligned_cols=149 Identities=12% Similarity=0.106 Sum_probs=89.6
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHH-H---HHHHHHHHHHhCCcE--EEEcCChHHHHHHHHhcCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPE-T---YRFFDEVEKHFGIRI--EYMFPDAVEVQALVRSKGL 83 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pe-t---~~~v~~~~~~~g~~i--~~~~p~~~~~~~~~~~~~~ 83 (361)
+++|+||||+||+++ +++.+.+.++.++|+|+|....+ . ...+.+....++.++ .++........... ..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~ 79 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFFVQKEIY-GYGK 79 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHHHHHHHH-HhCC
Confidence 479999999999877 78888888899999999975443 1 222223335566544 45544321111111 1221
Q ss_pred CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 161 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d 161 (361)
+ . ++..-|......-+..+.. +.+.+++|+..+|-. .-.......... ..++..++|++++++.|
T Consensus 80 ~---~-~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~-~~~~~~l~~~~~--------~~~~~i~rPl~~~~K~e 146 (177)
T cd01712 80 E---K-YRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVA-SQTLENLLVISS--------GTDLPILRPLIGFDKEE 146 (177)
T ss_pred C---c-cHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccch-HHHHHhhhhccc--------CCCCeEECCCCCCCHHH
Confidence 1 1 2222243333333333333 668999999998853 212122211111 12466799999999999
Q ss_pred HHHHHHhCCCCC
Q 018045 162 IWNFLRTMDVPI 173 (361)
Q Consensus 162 v~~yi~~~~lp~ 173 (361)
|+.|.+++||+.
T Consensus 147 I~~~a~~~gl~~ 158 (177)
T cd01712 147 IIGIARRIGTYD 158 (177)
T ss_pred HHHHHHHcCCcc
Confidence 999999999855
No 102
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.32 E-value=4.7e-11 Score=100.52 Aligned_cols=140 Identities=15% Similarity=0.232 Sum_probs=91.9
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 89 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~ 89 (361)
+++|++|||+||+++ +++.+.+.++.++++|.|....+-.++++++++.+| +...+...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~------------------- 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPAR------------------- 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcCCcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCc-------------------
Confidence 578999999999877 888888888999999998664445589999999999 32222110
Q ss_pred chhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCC-C-cee-cCCCCcCCcCCCCCeEEEeeCccCcHHHHHH
Q 018045 90 GHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEI-P-VVQ-VDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 164 (361)
Q Consensus 90 ~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~-~-~~~-~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~ 164 (361)
......-+.++.. +.+.+++|+..+|.. ..... + .++ .+... . .....++--++||++|++.||..
T Consensus 61 ------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~~v~~PL~~~~K~ei~~ 131 (169)
T cd01995 61 ------NLIFLSIAAAYAEALGAEAIIIGVNAEDYS-GYPDCRPEFIEAMNKAL-N-LGTENGIKIHAPLIDLSKAEIVR 131 (169)
T ss_pred ------CHHHHHHHHHHHHHCCCCEEEEeeccCccC-CCCCCCHHHHHHHHHHH-H-hhcCCCeEEEeCcccCCHHHHHH
Confidence 0011122233322 678899999999852 21110 0 000 00000 0 00112455689999999999999
Q ss_pred HHHhCCCCCCccccC
Q 018045 165 FLRTMDVPINSLHSQ 179 (361)
Q Consensus 165 yi~~~~lp~~~lY~~ 179 (361)
++++.|+|+..-|.+
T Consensus 132 ~~~~~g~~~~~s~sC 146 (169)
T cd01995 132 LGGELGVPLELTWSC 146 (169)
T ss_pred HHhHcCCChhheeec
Confidence 999999999888865
No 103
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.3e-12 Score=119.17 Aligned_cols=106 Identities=31% Similarity=0.656 Sum_probs=93.7
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
.|..++..+|...+. +.+..++|.||+|||++|+.+.|.|++++..++. ..+.++.+|++.. ..++ ++++|.++|
T Consensus 145 ~v~~l~~~~~~~~~~--~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~-~~~~-~~~~v~~~P 220 (383)
T KOG0191|consen 145 EVFELTKDNFDETVK--DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH-KSLA-SRLEVRGYP 220 (383)
T ss_pred ceEEccccchhhhhh--ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH-HHHh-hhhcccCCc
Confidence 588999999998765 4688999999999999999999999999999973 4899999999977 8999 999999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
|+.+|++|.+ ...+..+.++.+.+.+|+++.
T Consensus 221 t~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 221 TLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred eEEEecCCCc-ccccccccccHHHHHHHHHhh
Confidence 9999999885 455555689999999999864
No 104
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.32 E-value=3.8e-11 Score=112.07 Aligned_cols=157 Identities=12% Similarity=0.092 Sum_probs=105.1
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC----------cHHHHHHHHHHHHHhCCcEEEEcCChHHH----H
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL----------NPETYRFFDEVEKHFGIRIEYMFPDAVEV----Q 75 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~----------~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~ 75 (361)
+|+|++|||+||+++ +|+.+.+.++..+|++++.. .++-.++++++++++|++++++.-..... .
T Consensus 2 kVlValSGGvDSsvla~lL~~~G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~ 81 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVID 81 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcCCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHH
Confidence 689999999999877 88888888899999998642 35678899999999999998875433211 1
Q ss_pred HHHHh--cCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceec-CC----CCcCCcCCCC
Q 018045 76 ALVRS--KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV-DP----VFEGLEGGVG 146 (361)
Q Consensus 76 ~~~~~--~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~-~~----~~~~~~~~~~ 146 (361)
.++.. .|..+ .....|....|..-+.++++ +.+.++||+.+++.. .+ .+... +. .|.-..-...
T Consensus 82 ~~~~~~~~g~tp---npc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~-~~---~L~rg~d~~kDqsy~l~~l~~~ 154 (346)
T PRK00143 82 YFLDEYKAGRTP---NPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD-GR---ELLRGVDPNKDQSYFLYQLTQE 154 (346)
T ss_pred HHHHHHHcCCCC---CcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc-cc---eEEEccCCCcChhhhhccCCHH
Confidence 12222 22211 12334455577777777776 678999999999863 22 22221 10 0100000000
Q ss_pred -CeEEEeeCccCcHHHHHHHHHhCCCCCC
Q 018045 147 -SLVKWNPVANVKGNDIWNFLRTMDVPIN 174 (361)
Q Consensus 147 -~~~~~~Pi~~W~~~dv~~yi~~~~lp~~ 174 (361)
-.-.++||.+++++||.+|.++++||+.
T Consensus 155 ~l~~~i~PL~~~~K~eVr~~A~~~gl~~~ 183 (346)
T PRK00143 155 QLAKLLFPLGELTKPEVREIAEEAGLPVA 183 (346)
T ss_pred HhcceeccCccCCHHHHHHHHHHcCCCcC
Confidence 1136899999999999999999999863
No 105
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.31 E-value=1.3e-11 Score=108.02 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=76.2
Q ss_pred ecCcccHHHHHhhcCCCCc-EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE
Q 018045 253 TLNRTGMENLARLDHRQEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331 (361)
Q Consensus 253 ~l~~~~f~~~~~~~~~~~~-vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~ 331 (361)
.|+.+..+.+.. .+++ +++.||++||++|+.+.|.+++++.... ++.+..||.+.+ ++++ ++|+|.++||++
T Consensus 119 ~L~~~~~~~l~~---~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~-~~~~-~~~~V~~vPtl~ 191 (215)
T TIGR02187 119 GLSEKTVELLQS---LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANEN-PDLA-EKYGVMSVPKIV 191 (215)
T ss_pred CCCHHHHHHHHh---cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCC-HHHH-HHhCCccCCEEE
Confidence 355555555443 3444 4555999999999999999999998853 599999999999 9999 999999999999
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 332 FFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 332 ~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
++++|. . +.| ..+.++|.++|++
T Consensus 192 i~~~~~--~--~~G-~~~~~~l~~~l~~ 214 (215)
T TIGR02187 192 INKGVE--E--FVG-AYPEEQFLEYILS 214 (215)
T ss_pred EecCCE--E--EEC-CCCHHHHHHHHHh
Confidence 997765 2 555 6788999999875
No 106
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.31 E-value=1.4e-12 Score=113.80 Aligned_cols=152 Identities=20% Similarity=0.325 Sum_probs=108.8
Q ss_pred cEEEEecchHHHHHH-HHHHHc-----------C-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH
Q 018045 11 DIAIAFSGAEDVALI-EYAHLT-----------G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL 77 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~-----------~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~ 77 (361)
.+..||.||||.+++ +++.+. + -.++.+|+|.+..||+..+|+.....+|.+.+..+.-... .
T Consensus 84 ~~a~SFnggkdc~vll~ll~~~l~~~~~~~~~~p~~~i~~~~~~~~~~fp~~~~fv~~~~~~y~~~l~~~~~~~~-l--- 159 (282)
T KOG2644|consen 84 EMALSFNGGKDCTVLLLLLMRYLRDEYAEKLDQPSTAIPAVYIDVEDSFPELEDFVSVCVFKYRPQLSRLSGAGR-L--- 159 (282)
T ss_pred HHHHhhCCCCChHHHHHHHHHHhcchhhhhccCCCccccceeecCCCCcccccchHHHHHHhhccchhhccCcch-H---
Confidence 467889999998766 665551 1 1477899999999999999999999999877652211100 0
Q ss_pred HHhcCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045 78 VRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 157 (361)
Q Consensus 78 ~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W 157 (361)
...-+...|+.| ....++.|+|..+.. .-+.+++.-.|. .++++++..||++|
T Consensus 160 -------------k~~~~~~~~~~~------~~k~i~vg~r~~dp~-g~~~~~~~~td~-------~wp~~~r~~pll~w 212 (282)
T KOG2644|consen 160 -------------KKALSLFKKVDP------ESKAILVGIRNTDPV-GEALAPFERTDS-------LWPQFMRLLPLLEW 212 (282)
T ss_pred -------------HHHHHHhhhhhh------hhhhHhhhhhhCCCc-cceecceeeccC-------Cchhhhhhcccccc
Confidence 001112222222 344678899999974 433343333332 45788999999999
Q ss_pred cHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCC
Q 018045 158 KGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 193 (361)
Q Consensus 158 ~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~ 193 (361)
+..|||++++..++|+|.||++||+|+|-..-|.+.
T Consensus 213 s~t~vw~~l~~~~~p~c~ly~qg~TslG~~~~t~pn 248 (282)
T KOG2644|consen 213 SYTDVWDLLREGNLPYCGLYDQGYTSLGGRSNTSPN 248 (282)
T ss_pred hHHHHHHHHhcCCCceeeeecccccccccccCCCCC
Confidence 999999999999999999999999999987776643
No 107
>PHA02125 thioredoxin-like protein
Probab=99.30 E-value=1.5e-11 Score=88.71 Aligned_cols=72 Identities=19% Similarity=0.374 Sum_probs=56.5
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 352 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~ 352 (361)
+++|||+||++|+.+.|.|+++. +.++.||++.+ .+++ ++|+|.++||++ +|+. ...+.|...+..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~-~~l~-~~~~v~~~PT~~---~g~~-~~~~~G~~~~~~~ 68 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEG-VELT-AKHHIRSLPTLV---NTST-LDRFTGVPRNVAE 68 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCC-HHHH-HHcCCceeCeEE---CCEE-EEEEeCCCCcHHH
Confidence 78999999999999999997652 56899999998 9999 999999999988 4542 2345553455566
Q ss_pred HHHHH
Q 018045 353 LMAFV 357 (361)
Q Consensus 353 l~~~i 357 (361)
|.+-|
T Consensus 69 l~~~~ 73 (75)
T PHA02125 69 LKEKL 73 (75)
T ss_pred HHHHh
Confidence 66543
No 108
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=3.6e-12 Score=120.66 Aligned_cols=107 Identities=16% Similarity=0.360 Sum_probs=84.4
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCC-chHHHHHcCCC
Q 018045 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGD-QKEYAKQKLQL 324 (361)
Q Consensus 248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~-~~~l~~~~~~v 324 (361)
+.+|.+|+.++|+..+. .+.+-.+|.||++||++|+.+.|.|+++|+.+.. .-+.++.|||-.. +..+| ++|+|
T Consensus 38 ~D~ii~Ld~~tf~~~v~--~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC-Ref~V 114 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVF--GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC-REFSV 114 (606)
T ss_pred CCCeEEeehhhhHHHhc--ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH-hhcCC
Confidence 47899999999999876 3557899999999999999999999999999876 3688999999543 27899 99999
Q ss_pred CCCCeEEEEeCCCCC---eeecCCCCCCHHHHHHHHH
Q 018045 325 GSFPTILFFPKHSSK---PIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 325 ~~~Pt~~~~~~g~~~---~~~~~~~~~~~~~l~~~i~ 358 (361)
.++|++.+|+.+... -..+.| .....++.+.+.
T Consensus 115 ~~~Ptlryf~~~~~~~~~G~~~~~-~~~~~ei~~~l~ 150 (606)
T KOG1731|consen 115 SGYPTLRYFPPDSQNKTDGSDVSG-PVIPSEIRDQLI 150 (606)
T ss_pred CCCceeeecCCccccCcCCCcccC-CcchhhHHHHHH
Confidence 999999999776421 122232 344555555554
No 109
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.29 E-value=3.1e-11 Score=118.20 Aligned_cols=167 Identities=14% Similarity=0.215 Sum_probs=106.7
Q ss_pred CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 86 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~ 86 (361)
++++|++|||+||+++ +++.+. +.++.++|+|+|.. -+|..+.++.+++++|++++++..+..... ...|. .-
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f~~---~l~g~-~~ 291 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRFLS---ALAGV-TD 291 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHHHH---hccCC-CC
Confidence 6899999999999877 777665 77899999999964 457777777788999999988754422111 11232 11
Q ss_pred CccchhchhhccccHHHHHHHc---cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCC---CCeEEEeeCccCcHH
Q 018045 87 YEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGV---GSLVKWNPVANVKGN 160 (361)
Q Consensus 87 ~~~~~~~cc~~~K~~pl~~~~~---~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~---~~~~~~~Pi~~W~~~ 160 (361)
+......||..+ ..-+.+..+ +.+.+++|+..+|....|...+.-... +..+ ..+. ...-.+.||.+++++
T Consensus 292 ~~~~r~~~~~~~-~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~~~~~ik-~~~~-l~Gl~~~~~~~ii~PL~~l~K~ 368 (511)
T PRK00074 292 PEEKRKIIGREF-IEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTKKAATIK-SHHN-VGGLPEDMKLKLVEPLRELFKD 368 (511)
T ss_pred cHHhhhhhhHHH-HHHHHHHHHHccCCCEEEECCCcchhhhhcCCCCccccc-cccC-ccCcChhHhcccccchhhcCHH
Confidence 222223344433 245555553 557899999988874233111000000 0000 0011 113468999999999
Q ss_pred HHHHHHHhCCCCCCccccCCCCC
Q 018045 161 DIWNFLRTMDVPINSLHSQGYIS 183 (361)
Q Consensus 161 dv~~yi~~~~lp~~~lY~~g~~~ 183 (361)
||.+|.+++|||+.-.+++-|+.
T Consensus 369 EIr~~a~~~gLp~~~~~~~p~p~ 391 (511)
T PRK00074 369 EVRKLGLELGLPEEIVYRHPFPG 391 (511)
T ss_pred HHHHHHHHcCCCHHHhCCCCCCC
Confidence 99999999999988888775443
No 110
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.29 E-value=2.2e-11 Score=117.85 Aligned_cols=88 Identities=16% Similarity=0.313 Sum_probs=71.0
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE----------------------------cCCCchHHHH
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR----------------------------ADGDQKEYAK 319 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd----------------------------~~~~~~~l~~ 319 (361)
+++++||+|||+||++|+.++|.++++++.++.+++.|+.|. +|.+ ..++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~-~~la- 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG-GTLA- 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc-HHHH-
Confidence 689999999999999999999999999999875456666553 3344 6788
Q ss_pred HcCCCCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 320 QKLQLGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 320 ~~~~v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
+.|+|.++||++++ ++|+ ....+.| ..+.++|.++|+.
T Consensus 133 k~fgV~giPTt~IIDkdGk-IV~~~~G-~~~~eeL~a~Ie~ 171 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGD-VQRIVKG-SISEAQALALIRN 171 (521)
T ss_pred HHcCCCCcCeEEEEcCCCe-EEEEEeC-CCCHHHHHHHHHH
Confidence 89999999999877 4565 2344455 7999999999984
No 111
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.28 E-value=5.9e-11 Score=108.73 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=102.3
Q ss_pred CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCCcH-HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNP-ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 86 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~~p-et~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~ 86 (361)
++++|++|||+||+++ +|+.+ .+.++.++|+|+|.... |..+..+.+++++|++++++......... ..+...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~fl~~---l~~v~~- 92 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERFLSA---LKGVTD- 92 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHHHhh---hcCCCC-
Confidence 6899999999999877 77766 47789999999997544 44444455567899999888554321111 112211
Q ss_pred CccchhchhhccccHHHHHHHc--c-CCEEEEeeeccCCccCccCC-CceecCCCCcCCcCCCCCeEEEeeCccCcHHHH
Q 018045 87 YEDGHQECCRVRKVRPLRRALK--G-LRAWITGQRKDQSPGTRSEI-PVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDI 162 (361)
Q Consensus 87 ~~~~~~~cc~~~K~~pl~~~~~--~-~~~~i~G~R~~Es~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv 162 (361)
+. ..+..|......-+....+ + .+.+++|+..+|-...|... ..+.......+.. .....-.+.||.+.+++||
T Consensus 93 p~-~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~-~~~~~~ii~PL~~l~K~EV 170 (311)
T TIGR00884 93 PE-EKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLP-EDMKLKLVEPLRELFKDEV 170 (311)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhccChhHhhhccCccccCC-hhhcCceEEEcccCcHHHH
Confidence 11 1122233333445555544 4 67899999998753233210 0000000000000 0012336899999999999
Q ss_pred HHHHHhCCCCCCccccCCCC
Q 018045 163 WNFLRTMDVPINSLHSQGYI 182 (361)
Q Consensus 163 ~~yi~~~~lp~~~lY~~g~~ 182 (361)
..|.+..|||.+-.+++-|.
T Consensus 171 r~la~~lgLp~~~~~~~Pf~ 190 (311)
T TIGR00884 171 RKLGKELGLPEEIVWRHPFP 190 (311)
T ss_pred HHHHHHcCCCHHHhhCCCCC
Confidence 99999999998777777554
No 112
>PRK00919 GMP synthase subunit B; Validated
Probab=99.28 E-value=5.2e-11 Score=108.36 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=104.1
Q ss_pred CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFY 87 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~ 87 (361)
++++|+||||.||+++ .++.+ .+.++.++|+|+|.....-.+.+.++++++ +++.++.........+ .+. .-+
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~fl~~L---~~v-~np 96 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDRFLDAL---KGV-TDP 96 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHHHHHhc---cCC-CCh
Confidence 7899999999999877 77767 577899999999987777788888888887 8887775443211111 122 111
Q ss_pred ccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHHH
Q 018045 88 EDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNF 165 (361)
Q Consensus 88 ~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~y 165 (361)
.. .+.-|......-+.+..+ +.+.+++|+..+|....|..+... . ...+.. .....-.+.||.+++.+||.+|
T Consensus 97 e~-rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r~~iks~--~-nv~gl~-~~~~~~Ii~PL~~l~K~EVr~l 171 (307)
T PRK00919 97 EE-KRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESEGGIKSH--H-NVGGLP-EGMVLKIVEPLRDLYKDEVREV 171 (307)
T ss_pred HH-hhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhccCccccc--c-cccccC-hhhcCCcccCchhCcHHHHHHH
Confidence 11 111133333444444443 667899999998864333322110 0 000000 0012336899999999999999
Q ss_pred HHhCCCCCCccccCCCC
Q 018045 166 LRTMDVPINSLHSQGYI 182 (361)
Q Consensus 166 i~~~~lp~~~lY~~g~~ 182 (361)
.++.|||+.-++..-+.
T Consensus 172 a~~lGLp~~~~~r~p~~ 188 (307)
T PRK00919 172 ARALGLPEEISERMPFP 188 (307)
T ss_pred HHHcCCChhhhCCCCCC
Confidence 99999998666655444
No 113
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.26 E-value=5.1e-11 Score=97.80 Aligned_cols=89 Identities=17% Similarity=0.301 Sum_probs=65.4
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-----------hHHHHHcC---CCCCCCeEEEE
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-----------KEYAKQKL---QLGSFPTILFF 333 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-----------~~l~~~~~---~v~~~Pt~~~~ 333 (361)
..+..+|+|||+||++|+.+.|.+++++++++ +.++.|+.+... .......| ++.++||++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 45667999999999999999999999999983 556666665420 22321345 78999999999
Q ss_pred eCCCCCee-ecCCCCCCHHHHHHHHHHh
Q 018045 334 PKHSSKPI-KYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 334 ~~g~~~~~-~~~~~~~~~~~l~~~i~~~ 360 (361)
+..+.... ...| ..+.++|.+.|+++
T Consensus 126 D~~G~~i~~~~~G-~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQG-AVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeec-ccCHHHHHHHHHHh
Confidence 65432223 3445 78999999998876
No 114
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.26 E-value=3.9e-11 Score=108.03 Aligned_cols=88 Identities=15% Similarity=0.254 Sum_probs=70.0
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------chHHHHHcCCCCCCCeEEEEeC-C
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPK-H 336 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------~~~l~~~~~~v~~~Pt~~~~~~-g 336 (361)
.++++||+||++||++|+.+.|.+++++++++ +.++.|++|.. +..++ ++|+|.++|+++++++ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVFLADPDP 240 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEEEEECCC
Confidence 47899999999999999999999999999984 56666776652 14688 8999999999999987 5
Q ss_pred CCCeeecCCCCCCHHHHHHHHHHh
Q 018045 337 SSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+. ......|..+.++|.+.|..+
T Consensus 241 ~~-v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 241 NQ-FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred CE-EEEEEeCCCCHHHHHHHHHHH
Confidence 53 332232478999999888654
No 115
>PRK14561 hypothetical protein; Provisional
Probab=99.26 E-value=9.8e-11 Score=100.41 Aligned_cols=139 Identities=16% Similarity=0.226 Sum_probs=94.1
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH---HHhcCCCCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL---VRSKGLFSF 86 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~---~~~~~~~~~ 86 (361)
+++|++|||+||+++ +++.+. .++.+++++.|.. .-.++++.+++.+|++++++..+....... ....+.|
T Consensus 2 kV~ValSGG~DSslll~~l~~~-~~v~a~t~~~g~~--~e~~~a~~~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~~P-- 76 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-YDVELVTVNFGVL--DSWKHAREAAKALGFPHRVLELDREILEKAVDMIIEDGYP-- 76 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-CCeEEEEEecCch--hHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 689999999999877 777666 5677889999862 347899999999999998886654322222 2222211
Q ss_pred CccchhchhhccccHHHHHHHccCCEEEEeeeccCCcc--CccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHH
Q 018045 87 YEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPG--TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 164 (361)
Q Consensus 87 ~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~ 164 (361)
... |..+...-+..+..+++++++|+++||... .|..+..++ ...++.-++||+.+++.||..
T Consensus 77 ----~~~-~~~l~~~~l~~~a~g~~~Ia~G~n~DD~~et~~r~~~~a~~----------~~~gi~iirPL~~~~K~eI~~ 141 (194)
T PRK14561 77 ----NNA-IQYVHEHALEALAEEYDVIADGTRRDDRVPKLSRSEIQSLE----------DRKGVQYIRPLLGFGRKTIDR 141 (194)
T ss_pred ----Cch-hHHHHHHHHHHHHcCCCEEEEEecCCCcchhccHHHHhhhh----------cCCCcEEEeeCCCCCHHHHHH
Confidence 112 334444555555578899999999999630 233222211 112455689999999999999
Q ss_pred HHHhC
Q 018045 165 FLRTM 169 (361)
Q Consensus 165 yi~~~ 169 (361)
+.+..
T Consensus 142 la~~l 146 (194)
T PRK14561 142 LVERL 146 (194)
T ss_pred HHHhh
Confidence 98854
No 116
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.25 E-value=9.5e-11 Score=109.42 Aligned_cols=161 Identities=11% Similarity=0.102 Sum_probs=100.4
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCC-----C-----CcHHHHHHHHHHHHHhCCcEEEEcCChHHH----H
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-----R-----LNPETYRFFDEVEKHFGIRIEYMFPDAVEV----Q 75 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg-----~-----~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~ 75 (361)
+++|++|||+||+++ +|+.+.+.++..+|+++. . ..++-.+.++++++.+|++++++.-..... .
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~ 81 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFE 81 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcCCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHH
Confidence 689999999999877 888888888988988532 1 235677889999999999998875433211 1
Q ss_pred HHHHhc--CCCCCCccchhchhhccccHHHHHHHc---cCCEEEEeeec---cCCccCccCCCceecCC--CCcC-CcCC
Q 018045 76 ALVRSK--GLFSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRK---DQSPGTRSEIPVVQVDP--VFEG-LEGG 144 (361)
Q Consensus 76 ~~~~~~--~~~~~~~~~~~~cc~~~K~~pl~~~~~---~~~~~i~G~R~---~Es~~~R~~~~~~~~~~--~~~~-~~~~ 144 (361)
.+...+ |.. + ...-.|...+|...+.++++ +.+.++||+.+ ++. +....+.....+. .|.- ....
T Consensus 82 ~~~~~y~~g~t--p-npC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~-~~~~l~~~~d~~kDqsy~L~~l~~ 157 (352)
T TIGR00420 82 PFIQEYKEGRT--P-NPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIE-GKSLLLRALDKNKDQSYFLYHLSH 157 (352)
T ss_pred HHHHHHHcCCC--C-CcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCC-CcEEEEEccCCCcCcceecccCCH
Confidence 122221 221 1 12334446667667665553 66899999987 333 1222222221111 1100 0000
Q ss_pred CCCeEEEeeCccCcHHHHHHHHHhCCCCCCc
Q 018045 145 VGSLVKWNPVANVKGNDIWNFLRTMDVPINS 175 (361)
Q Consensus 145 ~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~ 175 (361)
..-.-.++||.+|+++||.+|++++|||+..
T Consensus 158 ~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~ 188 (352)
T TIGR00420 158 EQLAKLLFPLGELLKPEVRQIAKNAGLPTAE 188 (352)
T ss_pred HHhhhhcccCCCCCHHHHHHHHHHcCCCCCC
Confidence 0002258999999999999999999998644
No 117
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.24 E-value=5.7e-11 Score=96.41 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=60.3
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-------CCeEEEEEEcCCCc------------------------hH
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-------NGVKVGKFRADGDQ------------------------KE 316 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-------~~v~~~~vd~~~~~------------------------~~ 316 (361)
++++++|+|||+||++|+.+.|.+.++.+.+++ .++.++.|+.+.+. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 579999999999999999999999999887653 25899999887541 24
Q ss_pred HHHHcCCCCCCCeEEEEe-CCCCCeeecCC
Q 018045 317 YAKQKLQLGSFPTILFFP-KHSSKPIKYPS 345 (361)
Q Consensus 317 l~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~ 345 (361)
++ +.|+|.++|++++++ +|+ .+...+
T Consensus 104 l~-~~y~v~~iPt~vlId~~G~--Vv~~~~ 130 (146)
T cd03008 104 LE-AQFSVEELPTVVVLKPDGD--VLAANA 130 (146)
T ss_pred HH-HHcCCCCCCEEEEECCCCc--EEeeCh
Confidence 66 789999999999996 444 555544
No 118
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.21 E-value=2.8e-11 Score=94.55 Aligned_cols=87 Identities=25% Similarity=0.481 Sum_probs=62.8
Q ss_pred CCCCcEEEEEECCCChhHHhhHHHHHHHHH---HhcCCCeEEEEEEcCCCc-------------------hHHHHHcCCC
Q 018045 267 HRQEPWLVVLYAPWCQFCQAMEGSYVELAD---KLAGNGVKVGKFRADGDQ-------------------KEYAKQKLQL 324 (361)
Q Consensus 267 ~~~~~vlv~F~a~wC~~C~~~~p~~~~la~---~~~~~~v~~~~vd~~~~~-------------------~~l~~~~~~v 324 (361)
.+++++++.|+++||++|+.+.+.+....+ .++. ++.++.++++... .++. +.|+|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELA-QRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHH-HHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHH-HHcCC
Confidence 478999999999999999999999986544 3443 6888888887541 3578 89999
Q ss_pred CCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHH
Q 018045 325 GSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 325 ~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
.++||+++++ +|+. ...+.| ..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~-v~~~~G-~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKI-VYRIPG-YLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCE-EEEEES-S--HHHHHHHH
T ss_pred CccCEEEEEcCCCCE-EEEecC-CCCHHHHHhhC
Confidence 9999999996 5662 334555 78999998875
No 119
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.21 E-value=3.8e-10 Score=105.57 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=103.8
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC--------cHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HH
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--------NPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----AL 77 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~--------~pet~~~v~~~~~~~g~~i~~~~p~~~~~~----~~ 77 (361)
+|+|++|||+||+++ +|+.+.+.++..+|++++.. .++-.++++++++.+|+++.++.-...... .+
T Consensus 1 kVlValSGGvDSsvla~lL~~~g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~ 80 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPF 80 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHH
Confidence 589999999999877 88888888888999988732 346678999999999999988765432211 12
Q ss_pred HHh--cCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCc-cCCCceec-C----CCCcCCcCCC-C
Q 018045 78 VRS--KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTR-SEIPVVQV-D----PVFEGLEGGV-G 146 (361)
Q Consensus 78 ~~~--~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R-~~~~~~~~-~----~~~~~~~~~~-~ 146 (361)
+.. .|.. + .....|...+|...+.++.. +.+.++||+.+++.. .- ........ + ..|.-..... .
T Consensus 81 i~~~~~g~t--p-npc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~-~~~~~~~l~rg~d~~kdqsy~L~~~~~~~ 156 (349)
T cd01998 81 LEEYKKGRT--P-NPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE-DNNGRYRLLRGVDPNKDQSYFLSQLSQEQ 156 (349)
T ss_pred HHHHHcCCC--C-CchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee-cCCCceEEeecCCCCCCcceEeccCCHHH
Confidence 222 2221 1 12334555578777776665 678999999988753 22 11111111 1 0010000000 0
Q ss_pred CeEEEeeCccCcHHHHHHHHHhCCCCC
Q 018045 147 SLVKWNPVANVKGNDIWNFLRTMDVPI 173 (361)
Q Consensus 147 ~~~~~~Pi~~W~~~dv~~yi~~~~lp~ 173 (361)
....+.||.+++++||.+|.++++||.
T Consensus 157 l~~ii~PL~~~~K~eVr~~A~~~gl~~ 183 (349)
T cd01998 157 LSRLIFPLGDLTKPEVREIAKELGLPV 183 (349)
T ss_pred HhheeecCCCCCHHHHHHHHHHcCCCC
Confidence 123689999999999999999999984
No 120
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.20 E-value=5.8e-11 Score=114.20 Aligned_cols=154 Identities=12% Similarity=0.149 Sum_probs=99.0
Q ss_pred CCcEEEEecchHHHHHH-HHHHH-----cCCCceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045 9 GNDIAIAFSGAEDVALI-EYAHL-----TGRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 80 (361)
Q Consensus 9 ~~~i~vs~SGGKDS~~l-~l~~~-----~~~~i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~ 80 (361)
+++++|++|||+||++| |++.+ .+.++.++|+|.|.. ..+..++++++++.+|+++++.+-+.. .
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~~-------~ 87 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLD-------Q 87 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEecc-------C
Confidence 37899999999999877 77754 245788999999964 334468999999999999887643211 0
Q ss_pred cCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCC--CcCC--cCCCCCeEEEeeCcc
Q 018045 81 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPV--FEGL--EGGVGSLVKWNPVAN 156 (361)
Q Consensus 81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~--~~~~--~~~~~~~~~~~Pi~~ 156 (361)
.+ .....+.+..+-.-+.......+++++|+..||.. .-..+.......- ..+. ....++...++||++
T Consensus 88 ~~------~~~e~~AR~~Ry~~~~~~~~~~~~l~~aHh~DDq~-ET~L~~L~rG~g~~gL~gm~~~~~~~~~~liRPLL~ 160 (436)
T PRK10660 88 RG------LGIEAAARQARYQAFARTLLPGEVLVTAQHLDDQC-ETFLLALKRGSGPAGLSAMAEVSPFAGTRLIRPLLA 160 (436)
T ss_pred CC------CCHHHHHHHHHHHHHHHHHHhCCEEEEcCchHHHH-HHHHHHHHcCCChhhccccceecccCCCcEeCCCcc
Confidence 00 01222333333344444445557899999999863 3222222221100 0000 000123457899999
Q ss_pred CcHHHHHHHHHhCCCCCCcc
Q 018045 157 VKGNDIWNFLRTMDVPINSL 176 (361)
Q Consensus 157 W~~~dv~~yi~~~~lp~~~l 176 (361)
.+.+||..|...++||+.+-
T Consensus 161 ~~k~ei~~ya~~~~l~~~~D 180 (436)
T PRK10660 161 RSREELEQYAQAHGLRWIED 180 (436)
T ss_pred CCHHHHHHHHHHcCCCEEEC
Confidence 99999999999999998543
No 121
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.18 E-value=7.7e-11 Score=83.03 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=51.3
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEE
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~ 332 (361)
++.|+++||++|+.+++.++++++... ++.|..+|++++ ++++ +++++.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~-~~l~-~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEF-PDLA-DEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccC-HhHH-HHcCCcccCEEEE
Confidence 789999999999999999999987653 599999999999 9999 9999999999866
No 122
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.18 E-value=1.7e-10 Score=92.73 Aligned_cols=69 Identities=19% Similarity=0.398 Sum_probs=57.4
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCc-----------------------hHHHHHcC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQ-----------------------KEYAKQKL 322 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~-----------------------~~l~~~~~ 322 (361)
.++++||+||++||++|+.+.|.+.++.+.+.+ .++.++.|+++... ..++ +.|
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN-RTF 95 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH-HHc
Confidence 578999999999999999999999999998865 25778878776541 2466 789
Q ss_pred CCCCCCeEEEEe-CCC
Q 018045 323 QLGSFPTILFFP-KHS 337 (361)
Q Consensus 323 ~v~~~Pt~~~~~-~g~ 337 (361)
+|.++|++++++ +|+
T Consensus 96 ~v~~~P~~~lid~~G~ 111 (131)
T cd03009 96 KIEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCCEEEEECCCCC
Confidence 999999999996 554
No 123
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.18 E-value=5.4e-10 Score=104.30 Aligned_cols=171 Identities=12% Similarity=0.061 Sum_probs=109.4
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH----HHhc-
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL----VRSK- 81 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~----~~~~- 81 (361)
++++|++|||+||+++ +|+.+.+.++..+|++.+.. -++..+.++++++++|++++++.......... ...+
T Consensus 6 ~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~ 85 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYM 85 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHh
Confidence 6899999999999877 88888888899999987532 35668889999999999998875432211111 1111
Q ss_pred -CCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCC-cee-cCC----CC-cCCcCCCCCe--E
Q 018045 82 -GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIP-VVQ-VDP----VF-EGLEGGVGSL--V 149 (361)
Q Consensus 82 -~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~-~~~-~~~----~~-~~~~~~~~~~--~ 149 (361)
|.. ......|...+|..-+.++.+ +.+.++||+.+.-.. . .... ... .|. .| -... .... -
T Consensus 86 ~g~t---pnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~-~-~~~~~l~~g~D~~kDQSyfL~~l--~~~~l~~ 158 (360)
T PRK14665 86 SGHT---PVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQW-I-DGNYYITPAEDVDKDQSFFLWGL--RQEILQR 158 (360)
T ss_pred ccCC---CCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceec-c-CCcEEEEeecCCCCCceEEecCC--CHHHHhh
Confidence 211 113345666688777776665 678999998874321 1 1111 111 111 00 0000 0001 1
Q ss_pred EEeeCccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCC
Q 018045 150 KWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCT 190 (361)
Q Consensus 150 ~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct 190 (361)
.++||.+++++||.++.++.|++. .. .--.|-|+++|+
T Consensus 159 ~ifPLg~~~K~eVr~~A~~~gl~~--~a-~k~eSq~iCF~~ 196 (360)
T PRK14665 159 MLLPMGGMTKSEARAYAAERGFEK--VA-KKRDSLGVCFCP 196 (360)
T ss_pred eeccCcCCCHHHHHHHHHHCCCCc--cC-cCCCCCccccCC
Confidence 389999999999999999999732 22 235677888886
No 124
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.17 E-value=1.7e-10 Score=93.02 Aligned_cols=76 Identities=16% Similarity=0.344 Sum_probs=60.0
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCc------------------------hHHHHHc
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQ------------------------KEYAKQK 321 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~--~v~~~~vd~~~~~------------------------~~l~~~~ 321 (361)
+++.++|+||++||++|+.+.|.++++++.+++. ++.++.|+++... ..+. +.
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~ 94 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE-KQ 94 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH-HH
Confidence 5799999999999999999999999999998763 5788888877541 2455 67
Q ss_pred CCCCCCCeEEEEeCCCCCeeecCC
Q 018045 322 LQLGSFPTILFFPKHSSKPIKYPS 345 (361)
Q Consensus 322 ~~v~~~Pt~~~~~~g~~~~~~~~~ 345 (361)
|+|.++|++++++.+++ .+...+
T Consensus 95 ~~v~~iPt~~lid~~G~-iv~~~~ 117 (132)
T cd02964 95 FKVEGIPTLVVLKPDGD-VVTTNA 117 (132)
T ss_pred cCCCCCCEEEEECCCCC-EEchhH
Confidence 99999999999964332 454443
No 125
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.17 E-value=2.8e-10 Score=97.13 Aligned_cols=86 Identities=16% Similarity=0.300 Sum_probs=66.3
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------------------hHHHHHcCCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------------------KEYAKQKLQLG 325 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~~v~ 325 (361)
.+++++|+||++||++|+.+.|.+.++.+. ++.++.|+.+.+. ..+. ..|+|.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLG-LDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHH-HhcCCC
Confidence 588999999999999999999999988652 5788888865431 1244 578999
Q ss_pred CCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 326 SFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 326 ~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
++|+.++++ +|+ ....+.| ..+.+++.+.|+.+
T Consensus 142 ~~P~t~vid~~G~-i~~~~~G-~~~~~~l~~~i~~~ 175 (185)
T PRK15412 142 GAPETFLIDGNGI-IRYRHAG-DLNPRVWESEIKPL 175 (185)
T ss_pred cCCeEEEECCCce-EEEEEec-CCCHHHHHHHHHHH
Confidence 999888885 554 3455555 78999998888764
No 126
>PRK08349 hypothetical protein; Validated
Probab=99.15 E-value=2.1e-10 Score=98.94 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=88.5
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcE---EEEcCChH--HHHHHHHhcCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRI---EYMFPDAV--EVQALVRSKGL 83 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i---~~~~p~~~--~~~~~~~~~~~ 83 (361)
++++++|||+||+++ +++.+.+.++..+|+|++.. .....+.++++.+.+|+++ .++..... .........+.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g~~v~av~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 81 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRGVEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLRELKK 81 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHhhCC
Confidence 679999999999877 88888888999999998521 1223334444444445764 33322111 11111111111
Q ss_pred CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 161 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d 161 (361)
......-|..+...-+.++.. +.+.+++|++.+|.. .-...+....+. ..++..++|+++++++|
T Consensus 82 ----~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a-~~~l~nl~~~~~--------~~~i~i~rPL~~~~K~e 148 (198)
T PRK08349 82 ----EKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVA-SQTLDNLMVIST--------ATDLPVLRPLIGLDKEE 148 (198)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHH-HHHHHHHhcccc--------ccCCeEEcCCCCCCHHH
Confidence 012222255555566666554 668999999888852 222222222211 02345789999999999
Q ss_pred HHHHHHhCCCC
Q 018045 162 IWNFLRTMDVP 172 (361)
Q Consensus 162 v~~yi~~~~lp 172 (361)
|..|.++.|++
T Consensus 149 I~~~a~~~g~~ 159 (198)
T PRK08349 149 IVKIAKEIGTF 159 (198)
T ss_pred HHHHHHHcCCh
Confidence 99999999953
No 127
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.14 E-value=3.4e-10 Score=85.60 Aligned_cols=68 Identities=24% Similarity=0.448 Sum_probs=56.2
Q ss_pred CCcEEEEEECCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCc------------------------hHHHHHcCC
Q 018045 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQ------------------------KEYAKQKLQ 323 (361)
Q Consensus 269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~------------------------~~l~~~~~~ 323 (361)
+|+++|+|||+||++|+.+.|.+.++.+.++ +.++.|+.|..|... ..+. +.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL-KKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH-HHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH-HHCC
Confidence 5899999999999999999999999999999 348999999988651 3466 7899
Q ss_pred CCCCCeEEEEeCCC
Q 018045 324 LGSFPTILFFPKHS 337 (361)
Q Consensus 324 v~~~Pt~~~~~~g~ 337 (361)
|.++|++++++..+
T Consensus 80 i~~iP~~~lld~~G 93 (95)
T PF13905_consen 80 INGIPTLVLLDPDG 93 (95)
T ss_dssp -TSSSEEEEEETTS
T ss_pred CCcCCEEEEECCCC
Confidence 99999999997654
No 128
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.13 E-value=3.7e-10 Score=90.31 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=60.1
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-----------------------CCCchHHHHHcCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-----------------------DGDQKEYAKQKLQL 324 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~-----------------------~~~~~~l~~~~~~v 324 (361)
.+++++|+||++||++|+.+.|.++++++.+ ++.++.|+. |.. ..++ +.|++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~-~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-GRVG-IDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc-chHH-HhcCC
Confidence 5789999999999999999999999998775 266666653 344 5778 78999
Q ss_pred CCCCeEEEEe-CCCCCeeecCCCCCCHHHH
Q 018045 325 GSFPTILFFP-KHSSKPIKYPSERRDVDSL 353 (361)
Q Consensus 325 ~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l 353 (361)
.++|+.+++. +|+ ....+.| ..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~-v~~~~~G-~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGI-IRYKHVG-PLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCce-EEEEEec-cCChHhc
Confidence 9999777775 665 2445555 5666654
No 129
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.11 E-value=1.1e-09 Score=86.49 Aligned_cols=104 Identities=11% Similarity=0.093 Sum_probs=85.6
Q ss_pred CceecCcccHHHHHhhcCCCCcEEEEEECC--CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAP--WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 327 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~--wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~ 327 (361)
....++..+++.++. .....+|+|-.+ -++.+....=+++++++.|.+.++.|++||+|.+ ++++ .+|+|.++
T Consensus 18 g~~~~~~~~~~~~~~---~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-~~LA-~~fgV~si 92 (132)
T PRK11509 18 GWTPVSESRLDDWLT---QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-EAIG-DRFGVFRF 92 (132)
T ss_pred CCCccccccHHHHHh---CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-HHHH-HHcCCccC
Confidence 345567788888886 566666666543 4788889999999999999753599999999999 9999 99999999
Q ss_pred CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
||+++|++|+ .+....|..+.+++.++|+++
T Consensus 93 PTLl~FkdGk--~v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 93 PATLVFTGGN--YRGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred CEEEEEECCE--EEEEEeCcCCHHHHHHHHHHH
Confidence 9999999999 454444478999999999875
No 130
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.11 E-value=5.4e-10 Score=88.73 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=68.1
Q ss_pred ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE---------------------cC
Q 018045 253 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR---------------------AD 311 (361)
Q Consensus 253 ~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd---------------------~~ 311 (361)
.++.+.+..... .+++++|+||++||++|+.+.|.+.++++.+. +..+.+| .+
T Consensus 7 ~~~g~~~~~~~~---~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 7 TLDGEQFDLESL---SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVIND 80 (123)
T ss_pred cCCCCEeeHHHh---CCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence 344444444333 56899999999999999999999999987742 2222222 13
Q ss_pred CCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHH
Q 018045 312 GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMA 355 (361)
Q Consensus 312 ~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~ 355 (361)
.+ ..++ ++|+|.++|+++++++++ ....+.| ..+.+.|.+
T Consensus 81 ~~-~~~~-~~~~i~~~P~~~vid~~g-i~~~~~g-~~~~~~~~~ 120 (123)
T cd03011 81 PD-GVIS-ARWGVSVTPAIVIVDPGG-IVFVTTG-VTSEWGLRL 120 (123)
T ss_pred CC-cHHH-HhCCCCcccEEEEEcCCC-eEEEEec-cCCHHHHHh
Confidence 34 6788 899999999999998777 4555665 678888765
No 131
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.10 E-value=6e-10 Score=94.08 Aligned_cols=85 Identities=15% Similarity=0.226 Sum_probs=65.1
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----------------------CchHHHHHcCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----------------------DQKEYAKQKLQL 324 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----------------------~~~~l~~~~~~v 324 (361)
.+++++|+||++||++|+.+.|.++++++. ++.++.|+.+. + ..+. +.|++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~-~~~~-~~~~v 135 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPN-GKLG-LDLGV 135 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCC-CchH-HhcCC
Confidence 589999999999999999999999988753 36666666432 2 3556 67899
Q ss_pred CCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 325 GSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 325 ~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
.++|+.++++ +|+ ....+.| ..+.+++.++|+++
T Consensus 136 ~~~P~~~~id~~G~-i~~~~~G-~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 136 YGAPETFLVDGNGV-ILYRHAG-PLNNEVWTEGFLPA 170 (173)
T ss_pred eeCCeEEEEcCCce-EEEEEec-cCCHHHHHHHHHHH
Confidence 9999877774 565 2444455 78999999998865
No 132
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.08 E-value=1.6e-09 Score=84.97 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=76.5
Q ss_pred ccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHH-H--HHHHHHhcCCCeEEEEEEcCCC-chHHHHHcCCCCCCCeEE
Q 018045 257 TGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLGSFPTIL 331 (361)
Q Consensus 257 ~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~vd~~~~-~~~l~~~~~~v~~~Pt~~ 331 (361)
.+|++.++.. +++|+++|+|+++||++|+.|... | .++.+.++. ++.+..+|.+.. ...++ ..|++.++|+++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~-~~~~~~~~P~~~ 81 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFL-QSYKVDKYPHIA 81 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHH-HHhCccCCCeEE
Confidence 3455554433 358999999999999999999875 3 667777776 788888998752 26788 899999999999
Q ss_pred EEeC-CCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 332 FFPK-HSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 332 ~~~~-g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
++.. .+. .+....|..++++|.+.|++.
T Consensus 82 ~i~~~~g~-~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 82 IIDPRTGE-VLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred EEeCccCc-EeEEEcCCCCHHHHHHHHHHH
Confidence 9975 333 444444489999999888764
No 133
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.06 E-value=1.3e-09 Score=102.20 Aligned_cols=158 Identities=12% Similarity=0.150 Sum_probs=103.1
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhC-------CcEEEEcCCh-HHHHHHHHh
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-------IRIEYMFPDA-VEVQALVRS 80 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g-------~~i~~~~p~~-~~~~~~~~~ 80 (361)
+++++++|||+||.++ .|+.+.|.++..+|+|+| ++..+-++++++.++ +++.++.... ..+...+..
T Consensus 181 gkvlvllSGGiDSpVAa~ll~krG~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~~~v~~~i~~ 257 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLMMKRGVEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQERERIIQKLKE 257 (381)
T ss_pred CcEEEEEeCChHHHHHHHHHHHcCCeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEEEChHHHHHHHHHHHH
Confidence 5899999999999877 888899999999999988 677888999999877 4455554321 112222212
Q ss_pred cCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCcc--CCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045 81 KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRS--EIPVVQVDPVFEGLEGGVGSLVKWNPVAN 156 (361)
Q Consensus 81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~ 156 (361)
.... ...+.-|..+...-+++..+ +.++++||+..+|-. .-. ++...... .....++||+.
T Consensus 258 ~~~~----~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqva-SQtl~Nl~~i~~~----------~~lpilRPLi~ 322 (381)
T PRK08384 258 LKKE----NYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVA-SQTLENMYIVSQA----------SDLPIYRPLIG 322 (381)
T ss_pred hccC----CCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHH-HHHHHHHHHHhcc----------CCCcEEeeCCC
Confidence 1111 11222255444555555554 667999999988842 211 12111111 13457999999
Q ss_pred CcHHHHHHHHHhCC-CCCCccccCCCCCCCCCCCC
Q 018045 157 VKGNDIWNFLRTMD-VPINSLHSQGYISIGCEPCT 190 (361)
Q Consensus 157 W~~~dv~~yi~~~~-lp~~~lY~~g~~~~GC~~Ct 190 (361)
++++||-++.++.| +++.. ..+ -+|.+.|
T Consensus 323 ~dK~EIi~~Ar~iGT~~~s~---~~~--~dc~f~p 352 (381)
T PRK08384 323 MDKEEIVAIAKTIGTFELST---LPE--DEIPFIP 352 (381)
T ss_pred CCHHHHHHHHHHcCCccccc---CCC--CceEEeC
Confidence 99999999999999 77653 233 2475555
No 134
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.05 E-value=2.4e-09 Score=95.78 Aligned_cols=148 Identities=10% Similarity=0.123 Sum_probs=95.9
Q ss_pred CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCC-CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH-hcCCCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGR-LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR-SKGLFS 85 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~-~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~-~~~~~~ 85 (361)
++++|++|||+||+++ +|+.+. +.++..++++.+. ..++..+.++++++.+|++.+++.-... ...+.. ......
T Consensus 23 ~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~-~~~~~~~~~~~~~ 101 (250)
T TIGR00552 23 KGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPI-AASFQAQTETGDE 101 (250)
T ss_pred CCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHH-HHHHHHHhccccC
Confidence 7899999999999877 777775 4467777778774 3467889999999999999988744322 111111 001100
Q ss_pred CCc-cchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHH
Q 018045 86 FYE-DGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDI 162 (361)
Q Consensus 86 ~~~-~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv 162 (361)
... .....-|...++.-+....+ +..++.||++.+... ... . .+. .....++||.+.++.+|
T Consensus 102 ~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~-G~~-t-------~~g------d~~~~i~PL~~l~K~eV 166 (250)
T TIGR00552 102 LSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELML-GYF-T-------KYG------DGGCDIAPIGDLFKTQV 166 (250)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhh-CCe-e-------ccc------CCccCccccCCCcHHHH
Confidence 000 01123355567777776665 456888899865432 110 0 110 12236899999999999
Q ss_pred HHHHHhCCCCC
Q 018045 163 WNFLRTMDVPI 173 (361)
Q Consensus 163 ~~yi~~~~lp~ 173 (361)
+.|.+.+++|.
T Consensus 167 ~~lA~~~g~p~ 177 (250)
T TIGR00552 167 YELAKRLNVPE 177 (250)
T ss_pred HHHHHHHCccH
Confidence 99999999864
No 135
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.05 E-value=4e-09 Score=91.29 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=97.6
Q ss_pred EEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH----HHhcCCCCC
Q 018045 12 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL----VRSKGLFSF 86 (361)
Q Consensus 12 i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~----~~~~~~~~~ 86 (361)
++|++|||+||+++ +++.+.+.++..+++|.|....+-.++++++++.+|++++++..+. +..+ ......+..
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~--~~~~~~~~~~~~~~~~~ 78 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDEGYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSL--LKQLGGSALTDESEIPP 78 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHcCCcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechh--hcccccccccCCCCCCC
Confidence 37899999999877 7887877889999999997656678899999999999988764432 1110 000100000
Q ss_pred Cc-cc---hhchhhccc----cHHHHHHHc--cCCEEEEeeeccCCccC---ccC-CCceecCCCCcCCcCCCCCeEEEe
Q 018045 87 YE-DG---HQECCRVRK----VRPLRRALK--GLRAWITGQRKDQSPGT---RSE-IPVVQVDPVFEGLEGGVGSLVKWN 152 (361)
Q Consensus 87 ~~-~~---~~~cc~~~K----~~pl~~~~~--~~~~~i~G~R~~Es~~~---R~~-~~~~~~~~~~~~~~~~~~~~~~~~ 152 (361)
.. .. .+.+|.-.| ..-+..+.. +.+.+++|+..+|-... |.. +..+....... ...++.-++
T Consensus 79 ~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~~----~~~~~~i~~ 154 (201)
T TIGR00364 79 QKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNLG----MLTPVKIRA 154 (201)
T ss_pred cCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHhh----cCCCeEEEE
Confidence 00 00 112221111 122333332 67899999999884211 211 00000000000 012455689
Q ss_pred eCccCcHHHHHHHHHhCC---CCCCccccC
Q 018045 153 PVANVKGNDIWNFLRTMD---VPINSLHSQ 179 (361)
Q Consensus 153 Pi~~W~~~dv~~yi~~~~---lp~~~lY~~ 179 (361)
|++++++.||-++.+++| +|+.+-+.+
T Consensus 155 Pl~~~~K~eI~~la~~~g~~~~~~~~t~sC 184 (201)
T TIGR00364 155 PLMDLTKAEIVQLADELGVLDLVIKLTYSC 184 (201)
T ss_pred CCcCCCHHHHHHHHHHcCCccccHhhCCcC
Confidence 999999999999999999 876665544
No 136
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.04 E-value=3.5e-09 Score=92.71 Aligned_cols=177 Identities=13% Similarity=0.145 Sum_probs=104.8
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHH-HHH-HHHhcC--C
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVE-VQA-LVRSKG--L 83 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~-i~~~~p~~~~-~~~-~~~~~~--~ 83 (361)
++++|+||||.||+++ .++.+.+.++..+++|.|.....-++.++++++++|++ .+++.-+.-. +.. ...... .
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~~~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s~Lt~~~~~~ 81 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPV 81 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccccC
Confidence 4799999999999877 67766666788999999987788889999999999996 6665333110 000 000000 0
Q ss_pred CCCC---ccchhch--hhccccHHHHH-HH--ccCCEEEEeeeccCCccCccC----CCceecCCCCcCCcCCCCCeEEE
Q 018045 84 FSFY---EDGHQEC--CRVRKVRPLRR-AL--KGLRAWITGQRKDQSPGTRSE----IPVVQVDPVFEGLEGGVGSLVKW 151 (361)
Q Consensus 84 ~~~~---~~~~~~c--c~~~K~~pl~~-~~--~~~~~~i~G~R~~Es~~~R~~----~~~~~~~~~~~~~~~~~~~~~~~ 151 (361)
+... ...+..| |+..=...+.. +. .+.+.+++|+.++|....|.. +..++.--.+. ...++--.
T Consensus 82 p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~~~----~~~~i~I~ 157 (231)
T PRK11106 82 PDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLG----MAKDIRFE 157 (231)
T ss_pred CccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHHHHHHHHHhc----cCCCcEEE
Confidence 1000 0112223 22222222222 11 277899999999994346655 22211110000 01135567
Q ss_pred eeCccCcHHHHHHHHHhCC-CCC--CccccC--CCCCCCCCCCC
Q 018045 152 NPVANVKGNDIWNFLRTMD-VPI--NSLHSQ--GYISIGCEPCT 190 (361)
Q Consensus 152 ~Pi~~W~~~dv~~yi~~~~-lp~--~~lY~~--g~~~~GC~~Ct 190 (361)
.|+.+|+..||+..-++.| +|+ .-=|.+ |...-+|=.|+
T Consensus 158 aPl~~lsK~eI~~l~~~lg~v~~~~~~T~SCy~g~~g~~CG~C~ 201 (231)
T PRK11106 158 TPLMWLNKAETWALADYYGQLDLVRHETLTCYNGIKGDGCGHCA 201 (231)
T ss_pred ecCCCCCHHHHHHHHHHcCCcccccCceeeccCcCCCCCCCCCH
Confidence 9999999999999999999 877 444433 21112566664
No 137
>PLN02347 GMP synthetase
Probab=99.04 E-value=1.8e-09 Score=105.81 Aligned_cols=164 Identities=13% Similarity=0.139 Sum_probs=104.5
Q ss_pred CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 86 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~ 86 (361)
++++|++|||+||+++ +|+.+ .+.++..+|+|+|.. ..|..+.++.+++++|++++++..+...+.. -.|.
T Consensus 230 ~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e~fl~~---l~~~--- 303 (536)
T PLN02347 230 EHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASERFLSK---LKGV--- 303 (536)
T ss_pred CeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcHHHHhh---CCCC---
Confidence 5799999999999877 78888 687899999999964 5577666788999999999988655322221 1232
Q ss_pred Cccchhchhhcccc---HHHHHHHc------cC--CEEEEeeeccCCcc--CccCC-----Cce-ecCCCCcCCcCCCCC
Q 018045 87 YEDGHQECCRVRKV---RPLRRALK------GL--RAWITGQRKDQSPG--TRSEI-----PVV-QVDPVFEGLEGGVGS 147 (361)
Q Consensus 87 ~~~~~~~cc~~~K~---~pl~~~~~------~~--~~~i~G~R~~Es~~--~R~~~-----~~~-~~~~~~~~~~~~~~~ 147 (361)
- ++..-|...|. +-+.+..+ +. +.++.|+..+|-.. .|... ..+ +-.+.+.-. ....
T Consensus 304 ~--~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~hhn~~~l~--~~~~ 379 (536)
T PLN02347 304 T--DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLP--KDMK 379 (536)
T ss_pred C--ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCCCCCccccccceeeecccccCh--HHHH
Confidence 1 33333444444 55554442 22 56778998877421 34332 011 000000000 0001
Q ss_pred eEEEeeCccCcHHHHHHHHHhCCCCCCccccCCCCC
Q 018045 148 LVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYIS 183 (361)
Q Consensus 148 ~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~ 183 (361)
.--+.||.+++.+||.+..++.|||-+-++++-++.
T Consensus 380 ~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~~p~p~ 415 (536)
T PLN02347 380 LKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFPG 415 (536)
T ss_pred CccccchhhCcHHHHHHHHHHcCCCHHHhcCCCcCC
Confidence 124799999999999999999999866667665543
No 138
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.03 E-value=1.4e-09 Score=80.93 Aligned_cols=76 Identities=9% Similarity=0.074 Sum_probs=62.7
Q ss_pred CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCC
Q 018045 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 348 (361)
Q Consensus 269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~ 348 (361)
+..-+..|+++||++|..+.+.++++++.+. ++.+..+|.+.. ++++ ++|+|.++||+++ +|+ ..+.| ..
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~-~e~a-~~~~V~~vPt~vi--dG~---~~~~G-~~ 81 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALF-QDEV-EERGIMSVPAIFL--NGE---LFGFG-RM 81 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhC-HHHH-HHcCCccCCEEEE--CCE---EEEeC-CC
Confidence 4556888999999999999999999998875 499999999999 9999 9999999999975 676 23345 45
Q ss_pred CHHHHH
Q 018045 349 DVDSLM 354 (361)
Q Consensus 349 ~~~~l~ 354 (361)
+.+++.
T Consensus 82 ~~~e~~ 87 (89)
T cd03026 82 TLEEIL 87 (89)
T ss_pred CHHHHh
Confidence 666654
No 139
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.03 E-value=1.8e-09 Score=89.41 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=72.1
Q ss_pred cEEEEecchHHHHHH-HHHHHcCC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE 88 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~ 88 (361)
.++|++|||+||+++ +++.+... ++.++++|.|...++..++++++++. |+++..+.++........... ...-..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~~~-l~~~~~ 80 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQLAR-FKAKVG 80 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHHHH-HhcccC
Confidence 589999999999876 88877544 67789999999889999999999999 888766655543222211110 000001
Q ss_pred cchhchhhccccHHHHHHHc--cCCEEEEeeeccCCc
Q 018045 89 DGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 123 (361)
Q Consensus 89 ~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~ 123 (361)
.....|...+ ..-+.+..+ +.+++++|..++|..
T Consensus 81 ~p~~~~~~~~-~~~~~~~A~~~g~~~il~G~~~de~~ 116 (154)
T cd01996 81 DPCWPCDTAI-FTSLYKVALKFGIPLIITGENPAQEF 116 (154)
T ss_pred CCChhhhHHH-HHHHHHHHHHhCcCEEEeCcCHHHhc
Confidence 1122243333 334444443 567999999999975
No 140
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.02 E-value=2.6e-09 Score=100.68 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=95.5
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCCCc
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFYE 88 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~~~~~~~~~~~~~ 88 (361)
+++|+||||.||+++ +++.+.+.++.++++|+|.. .+-.+.+++.++.+|+ +++++..... +...+..+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g~~V~av~id~Gq~-~~e~~~a~~~a~~lGi~~~~viD~~~e----f~~~~~~~~i~- 74 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQP-EEDIDAIPEKALEYGAENHYTIDAREE----FVKDYGFAAIQ- 74 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEEEecCCC-hHHHHHHHHHHHHhCCCeEEEEeCHHH----HHHhhchhhhc-
Confidence 589999999999877 88877788899999999953 6778889999999997 6777644322 22222222111
Q ss_pred cchhchh-hcccc---HHH-----HHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCcc-
Q 018045 89 DGHQECC-RVRKV---RPL-----RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN- 156 (361)
Q Consensus 89 ~~~~~cc-~~~K~---~pl-----~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~- 156 (361)
.+...|| +.++. +|+ .+..+ +.++++.|.........|...+..... ++.-.+.|+.+
T Consensus 75 ~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r~~~~~~----------~~l~viaPLrew 144 (394)
T TIGR00032 75 ANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLN----------PDLKVIAPWRDL 144 (394)
T ss_pred CCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHhC----------CCCeEECchhhc
Confidence 1223333 33333 122 22222 678999999765331123222222122 23457899954
Q ss_pred -CcHHHHHHHHHhCCCCCC
Q 018045 157 -VKGNDIWNFLRTMDVPIN 174 (361)
Q Consensus 157 -W~~~dv~~yi~~~~lp~~ 174 (361)
++.+|+-+|++++|||+.
T Consensus 145 ~l~r~ei~~ya~~~Gip~~ 163 (394)
T TIGR00032 145 NFTREEEIEYAIQCGIPYP 163 (394)
T ss_pred CCCHHHHHHHHHHcCCCee
Confidence 699999999999999883
No 141
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.01 E-value=5.1e-09 Score=87.56 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=63.5
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------chHHHHHcCCC--CCCCeEEEEeCCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------QKEYAKQKLQL--GSFPTILFFPKHSS 338 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------~~~l~~~~~~v--~~~Pt~~~~~~g~~ 338 (361)
+|+||++||++|+++.|.+++++++++ +.++.|+.+.. +..+. ..|++ .++|+.++++..+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~-~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPYTLDGQGDTAFPEALPAPPDVMQ-TFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCCceEecCchhHHH-HHhCCCCCCCCeEEEEeCCCc
Confidence 778999999999999999999999983 67777776633 12355 68885 69999999955543
Q ss_pred Ce-eecCCCCCCHHHHHHHHHHh
Q 018045 339 KP-IKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 339 ~~-~~~~~~~~~~~~l~~~i~~~ 360 (361)
+. ..+.| ..+.++|.+.|+++
T Consensus 149 i~~~~~~G-~~~~~~L~~~I~~l 170 (181)
T PRK13728 149 EALPLLQG-ATDAAGFMARMDTV 170 (181)
T ss_pred EEEEEEEC-CCCHHHHHHHHHHH
Confidence 32 24566 78999998888764
No 142
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.01 E-value=2.2e-09 Score=83.37 Aligned_cols=69 Identities=26% Similarity=0.479 Sum_probs=59.5
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG 325 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v~ 325 (361)
.+++++|.||++||++|+...+.+.++.+.++..++.++.|+++.+ ...+. +.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELA-KAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHH-HhcCcC
Confidence 4789999999999999999999999999999754799999999872 14677 899999
Q ss_pred CCCeEEEEeCCC
Q 018045 326 SFPTILFFPKHS 337 (361)
Q Consensus 326 ~~Pt~~~~~~g~ 337 (361)
++|+++++++.+
T Consensus 97 ~~P~~~l~d~~g 108 (116)
T cd02966 97 GLPTTFLIDRDG 108 (116)
T ss_pred ccceEEEECCCC
Confidence 999999996444
No 143
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.01 E-value=2.6e-09 Score=99.50 Aligned_cols=157 Identities=14% Similarity=0.074 Sum_probs=99.7
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HHHH--hcC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----ALVR--SKG 82 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~----~~~~--~~~ 82 (361)
++|+|++|||.||+++ +++.+.+.++..+++++. .+..+.++++++++|+++.++.-...... .++. ..|
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL~~~G~eV~av~~~~~---~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~G 82 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW---GDEPQDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQG 82 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHHHHcCCcEEEEEecCc---chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHcC
Confidence 6899999999999876 778888888999999874 23446799999999999888754432111 1111 122
Q ss_pred CCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCc----CCCCCe--EEEeeC
Q 018045 83 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLE----GGVGSL--VKWNPV 154 (361)
Q Consensus 83 ~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~----~~~~~~--~~~~Pi 154 (361)
..+ .....|....|...+.+++. +.+.++||+.+.-.. .-....+..........+ ...+.. -.+.||
T Consensus 83 ~tp---npC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~-~~~~~~l~~g~D~~kDQsyfl~~l~~~~l~~~ifPL 158 (362)
T PRK14664 83 RTP---NPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEE-RNGHIYIVAGDDDKKDQSYFLWRLGQDILRRCIFPL 158 (362)
T ss_pred CCC---CCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccccc-CCCeEEEEEcCCCcchHHHHHHhcCHHHHhHHhccC
Confidence 211 12334555677777777665 667999999986542 211111222211100000 000111 258999
Q ss_pred ccCcHHHHHHHHHhCCCCC
Q 018045 155 ANVKGNDIWNFLRTMDVPI 173 (361)
Q Consensus 155 ~~W~~~dv~~yi~~~~lp~ 173 (361)
.+++.+||.+|++++|||.
T Consensus 159 g~~~K~evr~~A~~~gl~~ 177 (362)
T PRK14664 159 GNYTKQTVREYLREKGYEA 177 (362)
T ss_pred ccCCHHHHHHHHHHcCCCC
Confidence 9999999999999999976
No 144
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=1.7e-09 Score=114.55 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=72.2
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc---C------------------------CCchHHHHH
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA---D------------------------GDQKEYAKQ 320 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~---~------------------------~~~~~l~~~ 320 (361)
.++++||+|||+||++|+.+.|.|++++++|++.++.++.|.+ + .+ ..+. +
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~-~~~~-~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGD-MYLW-R 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCc-hHHH-H
Confidence 5899999999999999999999999999999875688887742 1 12 4577 7
Q ss_pred cCCCCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 321 KLQLGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 321 ~~~v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+|+|.++|+++++ ++|+. ...+.| ....+.|.++|+++
T Consensus 497 ~~~V~~iPt~ilid~~G~i-v~~~~G-~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKL-IAQLSG-EGHRKDLDDLVEAA 535 (1057)
T ss_pred hcCCCccceEEEECCCCeE-EEEEec-ccCHHHHHHHHHHH
Confidence 8999999999999 56663 334444 78889999998764
No 145
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.00 E-value=4.2e-09 Score=98.90 Aligned_cols=149 Identities=14% Similarity=0.197 Sum_probs=93.1
Q ss_pred CcEEEEecchHHHHHH-HHHHHc-CC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HHHHhcC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT-GR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----ALVRSKG 82 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~-~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~----~~~~~~~ 82 (361)
++|+|+||||.||+++ +++.+. +. ++.++++|+|. .++-.+.++++++.+|++++++.......+ ..+..+.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~-~~~e~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~n~ 81 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQ-PEEEIKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKANA 81 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHhCc
Confidence 5899999999999877 777664 65 89999999995 356678899999999999988754422221 1122211
Q ss_pred CCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeecc--CCccCccCCCceecCCCCcCCcCCCCCeEEEeeCcc--
Q 018045 83 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKD--QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN-- 156 (361)
Q Consensus 83 ~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~--Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~-- 156 (361)
...-+.... ..|......-+.++.+ +.+++++|.... |...-|..+... +.--+.|+.+
T Consensus 82 ~~~gYpl~~-~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~~a~--------------~l~viaP~re~~ 146 (394)
T PRK13820 82 LYEGYPLGT-ALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVFRAS--------------DLEVIAPIRELN 146 (394)
T ss_pred cccCCcCcH-HHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhhHhh--------------cCeeeCchhccC
Confidence 000000011 1233333334444443 668999999554 421012222111 1224578888
Q ss_pred CcHHHHHHHHHhCCCCCC
Q 018045 157 VKGNDIWNFLRTMDVPIN 174 (361)
Q Consensus 157 W~~~dv~~yi~~~~lp~~ 174 (361)
++.+||.+|++++|||+.
T Consensus 147 ltK~ei~~ya~~~gip~~ 164 (394)
T PRK13820 147 LTREWEIEYAKEKGIPVP 164 (394)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 599999999999999984
No 146
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.6e-10 Score=92.83 Aligned_cols=88 Identities=22% Similarity=0.401 Sum_probs=76.5
Q ss_pred CCCceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC-
Q 018045 248 SQNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG- 325 (361)
Q Consensus 248 ~~~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~- 325 (361)
...+..+ +.+.+++.+. .+..+.|+|.|||.|.+.|+.+.|.+.+++.+|..+.+.|++||+... ++.+ .+|+|.
T Consensus 123 pe~ikyf~~~q~~deel~-rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-pd~a-~kfris~ 199 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELD-RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-PDVA-AKFRISL 199 (265)
T ss_pred chheeeecchhhHHHHhc-cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-cChH-Hheeecc
Confidence 3567778 5555666554 566779999999999999999999999999999988899999999999 9999 999885
Q ss_pred -----CCCeEEEEeCCCC
Q 018045 326 -----SFPTILFFPKHSS 338 (361)
Q Consensus 326 -----~~Pt~~~~~~g~~ 338 (361)
.+||+++|++|++
T Consensus 200 s~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 200 SPGSRQLPTYILFQKGKE 217 (265)
T ss_pred CcccccCCeEEEEccchh
Confidence 6899999999986
No 147
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.99 E-value=4.1e-09 Score=99.02 Aligned_cols=150 Identities=20% Similarity=0.269 Sum_probs=95.4
Q ss_pred CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHH----HHHHHhcC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEV----QALVRSKG 82 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~----~~~~~~~~ 82 (361)
++++|+||||.||+++ +++.+. +.++..+++|+|.. +-++.++++++++|+ +++++.-..... ...+..+.
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~--~dle~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~n~ 80 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG--EELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANA 80 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH--HHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHhCh
Confidence 5899999999999877 777774 88899999999975 567889999999997 455543222111 12222211
Q ss_pred CC-CCCccchhchhhccccHHHHHHHc--cCCEEEEeeec--cCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045 83 LF-SFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRK--DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 157 (361)
Q Consensus 83 ~~-~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~--~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W 157 (361)
.. ..+......|-..+ ..-+.++.+ +.+++++|... +|- .|....+...++ ..-.+.|+.+|
T Consensus 81 ~y~g~ypl~~~lcr~~i-~~~l~~~A~~~G~~~IA~G~t~kGnDq--~rf~~g~~al~p----------el~VisPlre~ 147 (399)
T PRK00509 81 LYEGKYPLGTALARPLI-AKKLVEIARKEGADAVAHGCTGKGNDQ--VRFELGIAALAP----------DLKVIAPWREW 147 (399)
T ss_pred HhcCcCCCchHHHHHHH-HHHHHHHHHHcCCCEEEeCCCcCCCCH--HHHHHHHHHhCC----------CCeeecchhhc
Confidence 10 00101112222222 444444443 67799999987 553 343222222222 23468999999
Q ss_pred ---cHHHHHHHHHhCCCCCC
Q 018045 158 ---KGNDIWNFLRTMDVPIN 174 (361)
Q Consensus 158 ---~~~dv~~yi~~~~lp~~ 174 (361)
+.+|+.+|.+++|||+.
T Consensus 148 ~~~tK~eir~~A~~~Gipv~ 167 (399)
T PRK00509 148 DLKSREELIAYAEEHGIPIP 167 (399)
T ss_pred CCCCHHHHHHHHHHcCCCCC
Confidence 99999999999999984
No 148
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.99 E-value=2.7e-09 Score=83.48 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=51.1
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC---C----------------chHHHHHcCCCCCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---D----------------QKEYAKQKLQLGSFP 328 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~---~----------------~~~l~~~~~~v~~~P 328 (361)
++++++|+||++||++|+.+.|.++++++.+++ ++.++.+.-+. . +.++. +.|++..+|
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~P 97 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELG-MAYQVSKLP 97 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHH-hhcCCCCcC
Confidence 378999999999999999999999999988866 57666552111 1 03455 577888888
Q ss_pred eEEEEeCCC
Q 018045 329 TILFFPKHS 337 (361)
Q Consensus 329 t~~~~~~g~ 337 (361)
+.+++++.+
T Consensus 98 ~~~vid~~G 106 (114)
T cd02967 98 YAVLLDEAG 106 (114)
T ss_pred eEEEECCCC
Confidence 888886433
No 149
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.98 E-value=7.2e-09 Score=92.67 Aligned_cols=148 Identities=17% Similarity=0.122 Sum_probs=95.1
Q ss_pred CcEEEEecchHHHHHH-HHHHHcC--CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC-CC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL-FS 85 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~--~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~-~~ 85 (361)
++++|++|||.||+++ +|+.+.. .++..++++++...++..+.++.+++.+|++.+++..... +..+...... ..
T Consensus 24 ~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~-~~~~~~~~~~~~~ 102 (248)
T cd00553 24 KGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPA-VEAFLALLGESGG 102 (248)
T ss_pred CCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHH-HHHHHHHHhhhcc
Confidence 6899999999999877 7887753 5788999999987789999999999999999888754432 2222111100 00
Q ss_pred CCccchhch--hhccccHHHHHHHccCC--EEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045 86 FYEDGHQEC--CRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 161 (361)
Q Consensus 86 ~~~~~~~~c--c~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d 161 (361)
....+...| |..+++.-+..+.+... ++.||. ++|.. . ... .+++ .+...++||.+.+..+
T Consensus 103 ~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~-~--G~~-----t~~g------d~~~~i~Pl~~l~K~e 167 (248)
T cd00553 103 SELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELL-L--GYF-----TKYG------DGAADINPIGDLYKTQ 167 (248)
T ss_pred cchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHH-h--CCe-----eccC------CcccCccccCCCcHHH
Confidence 011111122 44555555666555443 444554 34432 1 110 1111 1234689999999999
Q ss_pred HHHHHHhCCCCC
Q 018045 162 IWNFLRTMDVPI 173 (361)
Q Consensus 162 v~~yi~~~~lp~ 173 (361)
|+.+.+..++|.
T Consensus 168 V~~la~~~~ip~ 179 (248)
T cd00553 168 VRELARYLGVPE 179 (248)
T ss_pred HHHHHHHHCchH
Confidence 999999999875
No 150
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.98 E-value=4.5e-09 Score=98.79 Aligned_cols=153 Identities=16% Similarity=0.212 Sum_probs=92.5
Q ss_pred EEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHH----HHHHHhcCCC
Q 018045 12 IAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEV----QALVRSKGLF 84 (361)
Q Consensus 12 i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~-i~~~~p~~~~~----~~~~~~~~~~ 84 (361)
|+|+||||.||+++ +++.+. +.++..+++|+|.. .+..+.+++.++.+|++ ++++.-..... ...+......
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~-~~~~e~a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~an~~~ 79 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQP-EEEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFPAIQANALY 79 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCc-chhHHHHHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHhCccc
Confidence 58999999999866 777665 44899999999964 33358999999999996 66664332211 1112211100
Q ss_pred -CCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC---c
Q 018045 85 -SFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV---K 158 (361)
Q Consensus 85 -~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W---~ 158 (361)
..+. ....+|+.+...-+.++.+ +.+++++|....-....|......... +.+-.+.|+.+| +
T Consensus 80 ~g~y~-l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~~~al~----------pel~ViaPlre~~~~s 148 (385)
T cd01999 80 EGTYP-LGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELAFYALN----------PDLKIIAPWRDWEFLS 148 (385)
T ss_pred cCCCc-CCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHHHHhhC----------CCCEEEcchhhhhcCC
Confidence 0000 0111233333233333333 678999999864221123222211111 234578999999 9
Q ss_pred HHHHHHHHHhCCCCCCcc
Q 018045 159 GNDIWNFLRTMDVPINSL 176 (361)
Q Consensus 159 ~~dv~~yi~~~~lp~~~l 176 (361)
.+|+..|.+++|||+..-
T Consensus 149 r~ev~~~A~~~Gip~~~~ 166 (385)
T cd01999 149 REEEIEYAEEHGIPVPVT 166 (385)
T ss_pred HHHHHHHHHHcCCCCccc
Confidence 999999999999998543
No 151
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.96 E-value=4.9e-09 Score=98.98 Aligned_cols=143 Identities=13% Similarity=0.158 Sum_probs=93.2
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC-cHHHHHHHHHHHHHh---CC--cEEEEcCChHHHHHHHHhcC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL-NPETYRFFDEVEKHF---GI--RIEYMFPDAVEVQALVRSKG 82 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~-~pet~~~v~~~~~~~---g~--~i~~~~p~~~~~~~~~~~~~ 82 (361)
++++|++|||.||+++ +++.+.+.++.++|+|++.. .++..+.++++++++ +. ++..+ +.......+....
T Consensus 173 ~kvlvllSGGiDS~vaa~ll~krG~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v--~~~~~~~~i~~~~ 250 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMMMKRGCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVF--DFTDVQEEIIHII 250 (371)
T ss_pred CeEEEEecCCchHHHHHHHHHHcCCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEE--eCHHHHHHHHhcC
Confidence 6899999999999877 88888888999999999854 357888999999988 43 44444 2222222221111
Q ss_pred CCCCCccchhchhhccccHHHH---HHHc--cCCEEEEeeeccCCcc-CccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045 83 LFSFYEDGHQECCRVRKVRPLR---RALK--GLRAWITGQRKDQSPG-TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 156 (361)
Q Consensus 83 ~~~~~~~~~~~cc~~~K~~pl~---~~~~--~~~~~i~G~R~~Es~~-~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~ 156 (361)
....+|..+|..-+. +... +.+.++||...+|-.. .+.++...... ....-++||+.
T Consensus 251 -------~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~~~----------~~~~I~rPLi~ 313 (371)
T TIGR00342 251 -------PEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQAV----------SNTPILRPLIG 313 (371)
T ss_pred -------CCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHhcc----------CCCCEEeCCCC
Confidence 112355555553332 2222 6789999999998521 12222221100 12335679999
Q ss_pred CcHHHHHHHHHhCCC
Q 018045 157 VKGNDIWNFLRTMDV 171 (361)
Q Consensus 157 W~~~dv~~yi~~~~l 171 (361)
++.+||.++.++.|.
T Consensus 314 ~~K~EIi~~a~~iG~ 328 (371)
T TIGR00342 314 MDKEEIIELAKEIGT 328 (371)
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999999993
No 152
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.96 E-value=1.9e-10 Score=97.41 Aligned_cols=101 Identities=21% Similarity=0.444 Sum_probs=91.7
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
..+..++.+|+.+++. .-+++.|+||||+.|+...|.|+.++.--.+-+|.+++||+..+ +.|. -+|-|...|
T Consensus 24 s~~~~~~eenw~~~l~-----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n-pgLs-GRF~vtaLp 96 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT-----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN-PGLS-GRFLVTALP 96 (248)
T ss_pred ceeEEecccchhhhhc-----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec-cccc-eeeEEEecc
Confidence 3789999999999774 78999999999999999999999998776656899999999999 9999 999999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
||+-.++|. ...|.| .++.++++.|++.
T Consensus 97 tIYHvkDGe--Frrysg-aRdk~dfisf~~~ 124 (248)
T KOG0913|consen 97 TIYHVKDGE--FRRYSG-ARDKNDFISFEEH 124 (248)
T ss_pred eEEEeeccc--cccccC-cccchhHHHHHHh
Confidence 999999998 788888 8999999999863
No 153
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.96 E-value=2.6e-09 Score=102.64 Aligned_cols=104 Identities=17% Similarity=0.321 Sum_probs=78.1
Q ss_pred ecCcc-cHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHH-HHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCC
Q 018045 253 TLNRT-GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYV-ELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSF 327 (361)
Q Consensus 253 ~l~~~-~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~-~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~ 327 (361)
.++.. ..++.+. ..++|+|+|+|||+||-.||.+++..- +.....+-.++...++|.++++ .++. ++|++-++
T Consensus 458 ~~s~~~~L~~~la-~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lL-k~~~~~G~ 535 (569)
T COG4232 458 PISPLAELDQALA-EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALL-KRLGVFGV 535 (569)
T ss_pred ccCCHHHHHHHHH-hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHH-HHcCCCCC
Confidence 34444 6677665 223459999999999999999999753 3333333346999999999885 4566 79999999
Q ss_pred CeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 328 PTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 328 Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
|++++|. +|++ +....| ..+++.+.+++++.
T Consensus 536 P~~~ff~~~g~e-~~~l~g-f~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGSE-PEILTG-FLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCCc-CcCCcc-eecHHHHHHHHHHh
Confidence 9999997 5554 334555 89999999999875
No 154
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.95 E-value=4.1e-09 Score=84.14 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=58.8
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----C---------------------chHHHHHc
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----D---------------------QKEYAKQK 321 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----~---------------------~~~l~~~~ 321 (361)
.+++++|+||++||++|+...|.++++.+++++.++.++.|+.+. . +..+. +.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~-~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATW-RA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHH-HH
Confidence 478999999999999999999999999999986578888886521 1 13466 67
Q ss_pred CCCCCCCeEEEEeCCCCCeeec
Q 018045 322 LQLGSFPTILFFPKHSSKPIKY 343 (361)
Q Consensus 322 ~~v~~~Pt~~~~~~g~~~~~~~ 343 (361)
|++.++|+.+++++.+.....+
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEE
Confidence 9999999999996443323333
No 155
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.95 E-value=5.9e-09 Score=98.12 Aligned_cols=148 Identities=20% Similarity=0.295 Sum_probs=92.8
Q ss_pred CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcE-EEEcCChHHHHHHHHhcCCCCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRI-EYMFPDAVEVQALVRSKGLFSF 86 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i-~~~~p~~~~~~~~~~~~~~~~~ 86 (361)
++++|+||||.||+++ +++.+. +.++..+++|+|. -.+-++.++++++++|++. +++ .-. +++.+..-.+..
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq-~~~el~~a~~~A~~lGi~~~~v~-dl~---~ef~~~~i~p~i 80 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQ-GIEELEGLEAKAKASGAKQLVVK-DLR---EEFVRDYIFPCL 80 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEE-eCH---HHHHHhhcCHHH
Confidence 5899999999999877 777664 7789999999996 3467888999999999974 444 211 122222211111
Q ss_pred Cccchhchhhcccc---HHH-----HHHHc--cCCEEEEeeec--cCCccCccCCCceecCCCCcCCcCCCCCeEEEeeC
Q 018045 87 YEDGHQECCRVRKV---RPL-----RRALK--GLRAWITGQRK--DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 154 (361)
Q Consensus 87 ~~~~~~~cc~~~K~---~pl-----~~~~~--~~~~~i~G~R~--~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi 154 (361)
.......-|+.+|. +|+ .++.+ +.++++.|... +|- .|....+...++ ..-.+.|+
T Consensus 81 ~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq--~rf~~~~~al~p----------el~ViaPl 148 (404)
T PLN00200 81 RANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQ--VRFELTFFALNP----------ELKVVAPW 148 (404)
T ss_pred HcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcH--HHHHHHHHHhCC----------CCeeeCch
Confidence 11112122344444 221 12222 66789989986 442 333222222221 23468999
Q ss_pred ccCc---HHHHHHHHHhCCCCCC
Q 018045 155 ANVK---GNDIWNFLRTMDVPIN 174 (361)
Q Consensus 155 ~~W~---~~dv~~yi~~~~lp~~ 174 (361)
.+|. .+|+.+|.+++|||+.
T Consensus 149 re~~~~~r~e~~~~A~~~Gipv~ 171 (404)
T PLN00200 149 REWDIKGREDLIEYAKKHNIPVP 171 (404)
T ss_pred hhcCCCCHHHHHHHHHHcCCCCC
Confidence 9995 9999999999999874
No 156
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.94 E-value=9.9e-09 Score=87.87 Aligned_cols=87 Identities=17% Similarity=0.262 Sum_probs=61.9
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC-------------------chHHHHHcCCCCCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-------------------QKEYAKQKLQLGSFP 328 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-------------------~~~l~~~~~~v~~~P 328 (361)
.+++++|+||++||++|+.+.|.+.++.+... +.++.|..+.. ..++. +.|++..+|
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~y~v~~~P 148 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIG-MAFQVGKIP 148 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHH-HhccCCccc
Confidence 57899999999999999999999999987653 33444432210 14677 789999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+.+++++.+. +.+.+...+.+.+.+.++.+
T Consensus 149 ~~~lID~~G~--I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 149 YGVLLDQDGK--IRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred eEEEECCCCe--EEEccCCCCHHHHHHHHHHH
Confidence 9988864442 33344335667787777754
No 157
>smart00594 UAS UAS domain.
Probab=98.93 E-value=1.3e-08 Score=80.76 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=75.2
Q ss_pred cccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeE
Q 018045 256 RTGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTI 330 (361)
Q Consensus 256 ~~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~ 330 (361)
..+|++.++.. .++|+++|+|+++||+.|+.+.... .++.+.++. ++.+..+|++..+ ..++ .+|++.++|++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~-~~~~~~~~P~~ 90 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVS-QFYKLDSFPYV 90 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHH-HhcCcCCCCEE
Confidence 35666665433 3588999999999999999998864 667777776 7888889987653 5788 89999999999
Q ss_pred EEEeCCC-C---CeeecCCCCCCHHHHHHHH
Q 018045 331 LFFPKHS-S---KPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 331 ~~~~~g~-~---~~~~~~~~~~~~~~l~~~i 357 (361)
+++.... . ..+....|..++++|.++|
T Consensus 91 ~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 91 AIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9994432 1 1333334588999998876
No 158
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.93 E-value=1e-08 Score=80.99 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=52.8
Q ss_pred cHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEE
Q 018045 258 GMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 333 (361)
Q Consensus 258 ~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~ 333 (361)
+|++.++. ..++|+++|+|+++||++|+.|...+ .++.+..+. ++..+.++.+..+..+. ..+ .++||++|+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~--~~g-~~vPtivFl 86 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS--PDG-QYVPRIMFV 86 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC--ccC-cccCeEEEE
Confidence 45555433 23699999999999999999999975 456666654 56666777664312222 223 689999999
Q ss_pred eCCCC
Q 018045 334 PKHSS 338 (361)
Q Consensus 334 ~~g~~ 338 (361)
+....
T Consensus 87 d~~g~ 91 (130)
T cd02960 87 DPSLT 91 (130)
T ss_pred CCCCC
Confidence 55443
No 159
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.92 E-value=9.9e-09 Score=96.15 Aligned_cols=147 Identities=17% Similarity=0.234 Sum_probs=98.0
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHH--------
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVR-------- 79 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~~~~-------- 79 (361)
++++|+||||-||+++ +++.+.+.++..+++|.|....+-++.++++++++|+ ++.++.-.....++++.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~ 82 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEG 82 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHcCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchh
Confidence 5899999999999777 7887788889999999998767778889999999998 57776554433333332
Q ss_pred hcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeee--ccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045 80 SKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQR--KDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA 155 (361)
Q Consensus 80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R--~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~ 155 (361)
..|..+.+. |.+-.|..-+.+..+ +.+++++|.. .+|-..-|..+.... + .-.+.|+.
T Consensus 83 y~G~yPl~~-----~nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfrpg~~Al~-e------------l~ViaPlr 144 (400)
T PRK04527 83 YQGQYPLLV-----SDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFDLAVKALG-D------------YQIVAPIR 144 (400)
T ss_pred hcCCCCCcc-----ccHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhhccHHHHHhh-c------------CCccchHH
Confidence 112211111 222234444444443 6789999997 444311233333222 1 12578999
Q ss_pred cC------cHHHHHHHHHhCCCCCC
Q 018045 156 NV------KGNDIWNFLRTMDVPIN 174 (361)
Q Consensus 156 ~W------~~~dv~~yi~~~~lp~~ 174 (361)
+| +.+|.-+|+++||||+.
T Consensus 145 e~~~~k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 145 EIQKEHTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred HhcCcccccHHHHHHHHHHcCCCCC
Confidence 98 56777999999999994
No 160
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.91 E-value=3.7e-09 Score=77.62 Aligned_cols=64 Identities=25% Similarity=0.493 Sum_probs=50.6
Q ss_pred CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045 267 HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 334 (361)
Q Consensus 267 ~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~ 334 (361)
.++++++|+|+++||++|+.|...+ .++.+.+.. ++.++.||.+.. .... ++...++|++++++
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~-~~~~--~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDE-DPNA--QFDRQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTH-HHHH--HHHHCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCC-ChhH--HhCCccCCEEEEeC
Confidence 3799999999999999999999987 566665665 799999999877 3322 12226699999986
No 161
>PRK13980 NAD synthetase; Provisional
Probab=98.91 E-value=1.7e-08 Score=91.14 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=94.6
Q ss_pred HHHhHhC-CcEEEEecchHHHHHH-HHHHHc-C-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHH
Q 018045 3 RALEKFG-NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALV 78 (361)
Q Consensus 3 ~~~~~~~-~~i~vs~SGGKDS~~l-~l~~~~-~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~ 78 (361)
...+.++ ++++|++|||+||+++ +|+.+. + .++..++++++...++..+.++.+++.+|++++++.-.. ....+.
T Consensus 23 ~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~-~~~~~~ 101 (265)
T PRK13980 23 EEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITP-IVDAFF 101 (265)
T ss_pred HHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHH-HHHHHH
Confidence 3345555 7899999999999777 777764 3 578899999998778899999999999999988774332 122222
Q ss_pred HhcCCCCCCccchhchhhccccHHHHHHHccCC--EEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045 79 RSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 156 (361)
Q Consensus 79 ~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~ 156 (361)
... +.........-|..+++..+..+.+... ++.||-+ +|.. . ..- ..++ .+..-++||.+
T Consensus 102 ~~~--~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~-sE~~--~-G~~-----t~~g------D~~~~l~Pl~~ 164 (265)
T PRK13980 102 SAI--PDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNK-SELL--L-GYF-----TKYG------DGAVDLNPIGD 164 (265)
T ss_pred HHc--ccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCH-hHHH--h-CCc-----cCCC------CcccCcccCCC
Confidence 111 1000001122244444555555555443 4445533 3321 1 110 1111 01224899999
Q ss_pred CcHHHHHHHHHhCCCC
Q 018045 157 VKGNDIWNFLRTMDVP 172 (361)
Q Consensus 157 W~~~dv~~yi~~~~lp 172 (361)
++..||++..+..|+|
T Consensus 165 l~K~eV~~la~~lgip 180 (265)
T PRK13980 165 LYKTQVRELARHLGVP 180 (265)
T ss_pred CcHHHHHHHHHHHCch
Confidence 9999999999999986
No 162
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.88 E-value=1.6e-08 Score=82.79 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=62.0
Q ss_pred CCCcEEEEEECC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------hHHHHHcCCCC-
Q 018045 268 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLG- 325 (361)
Q Consensus 268 ~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~~v~- 325 (361)
.+++++|.||++ ||++|+...|.+.++++.+++.++.++.|..+.+. ..+. +.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALA-KALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHH-HHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHH-HHhCCcc
Confidence 689999999999 99999999999999999988767999888876541 4577 789988
Q ss_pred --------CCCeEEEEeCCCCCeeecCC
Q 018045 326 --------SFPTILFFPKHSSKPIKYPS 345 (361)
Q Consensus 326 --------~~Pt~~~~~~g~~~~~~~~~ 345 (361)
++|+++++...++......|
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeC
Confidence 99999998655543333333
No 163
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.85 E-value=1.9e-08 Score=95.77 Aligned_cols=143 Identities=12% Similarity=0.152 Sum_probs=93.0
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCC-CCcHHHHHHHHHHHHHhC-----CcEEEEcCChHHHHHHHHhcC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHFG-----IRIEYMFPDAVEVQALVRSKG 82 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg-~~~pet~~~v~~~~~~~g-----~~i~~~~p~~~~~~~~~~~~~ 82 (361)
+++++++|||.||+++ +++.+.+.++.++|+++. +..+...+.+.+++++++ +++.++.-... ...+...
T Consensus 177 gkvvvllSGGiDS~vaa~l~~k~G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~~~--~~~i~~~- 253 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLAMKRGVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFTEI--QEEIKKK- 253 (394)
T ss_pred CCEEEEECCChhHHHHHHHHHHCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECHHH--HHHHhhc-
Confidence 5899999999999877 888888888888888763 444667778888888874 78877743321 1112211
Q ss_pred CCCCCccchhchhhccccHHH---HHHHc--cCCEEEEeeeccCCc-cCccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045 83 LFSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 156 (361)
Q Consensus 83 ~~~~~~~~~~~cc~~~K~~pl---~~~~~--~~~~~i~G~R~~Es~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~ 156 (361)
. ..+.+|..+|..-+ ..... +.++++||...+|-. ..+..+..+... ....-++||+.
T Consensus 254 ~------~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~~i~~~----------~~~~V~rPLig 317 (394)
T PRK01565 254 V------PESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMYAINAV----------TNLPVLRPLIG 317 (394)
T ss_pred C------CCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHHHhhc----------cCcEEEECCCC
Confidence 1 11234444444333 23222 677999999988852 123333222111 12345799999
Q ss_pred CcHHHHHHHHHhCCC
Q 018045 157 VKGNDIWNFLRTMDV 171 (361)
Q Consensus 157 W~~~dv~~yi~~~~l 171 (361)
++..||.++.++.|+
T Consensus 318 ~~K~EI~~lAr~iG~ 332 (394)
T PRK01565 318 MDKEEIIEIAKEIGT 332 (394)
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999999995
No 164
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.83 E-value=4.8e-08 Score=85.79 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=67.8
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---hHHHHHcCC--------------
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQKLQ-------------- 323 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~---~~l~~~~~~-------------- 323 (361)
.++++||+||++||++|+...|.++++.+++++.++.++.|+++. .. ..++.++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 478999999999999999999999999999987679999999742 10 111101111
Q ss_pred --------------------CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 324 --------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 324 --------------------v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
|...|+.++++..++....+.| ..+.++|.+.|+++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G-~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP-TTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 1235888888555544556665 68999999999876
No 165
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.82 E-value=3.1e-08 Score=85.41 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=40.6
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 311 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~ 311 (361)
.++++||+|||+||++|+...|.++++.+++++.++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 47899999999999999999999999999998767999999874
No 166
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.78 E-value=2.1e-08 Score=89.56 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=78.6
Q ss_pred CCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045 249 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 327 (361)
Q Consensus 249 ~~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~ 327 (361)
..|.+|+. +.|-+.+....++..|||+||.+.++.|..|...|..||.+|.. ++|++|..+.. + +. .+|.+..+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~-~-~~-~~f~~~~L 199 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKC-P-AS-ENFPDKNL 199 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGC-C-TT-TTS-TTC-
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhcc-C-cc-cCCcccCC
Confidence 46888854 77888776444566899999999999999999999999999986 99999999876 4 56 79999999
Q ss_pred CeEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHH
Q 018045 328 PTILFFPKHSSK-----PIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 328 Pt~~~~~~g~~~-----~~~~~~~~~~~~~l~~~i~~ 359 (361)
||+++|++|... .....|...+..+|..||.+
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 999999998742 12333456788999999875
No 167
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.78 E-value=4.2e-08 Score=91.77 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=75.9
Q ss_pred cEEEEecchHHHHHH-HHH-HHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 018045 11 DIAIAFSGAEDVALI-EYA-HLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE 88 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~-~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~ 88 (361)
.++|++||||||+++ +++ .+.+.++.++++|.|..-+...+.++++++++|++++++.++...+..+.... +.. ..
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~-~~~-~~ 138 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQRAY-FKK-VG 138 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHH-Hhc-cC
Confidence 499999999999877 676 44677777799999988788889999999999999999988765443333221 000 01
Q ss_pred cchhchhhccccHHHHHHHc-cCCEEEEeeeccC
Q 018045 89 DGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQ 121 (361)
Q Consensus 89 ~~~~~cc~~~K~~pl~~~~~-~~~~~i~G~R~~E 121 (361)
.....|...+...+.+.+.+ +..++++|..++|
T Consensus 139 ~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE 172 (343)
T TIGR03573 139 DPEWPQDHAIFASVYQVALKFNIPLIIWGENIAE 172 (343)
T ss_pred CCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHH
Confidence 12223444444444444444 5779999999997
No 168
>PLN02412 probable glutathione peroxidase
Probab=98.74 E-value=1e-07 Score=79.86 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=66.5
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------CchHH----HHHcCC-------------
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQKEY----AKQKLQ------------- 323 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~~~l----~~~~~~------------- 323 (361)
.++++||+||++||++|+...|.++++.+++++.++.++.|+++. ...++ + ++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~-~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVC-TRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHH-HccCCCCceEeEEeeCC
Confidence 468999999999999999999999999999997679999998742 10111 1 1111
Q ss_pred ---------------------CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 324 ---------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 324 ---------------------v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
|...|+.++++..++....+.| ..+.++|...|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g-~~~~~~l~~~i~~~ 163 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAP-TTSPLKIEKDIQNL 163 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 3345888888544443445555 78899999888765
No 169
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.73 E-value=9.7e-08 Score=78.89 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=65.2
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC--------CCc--hHHHHHcCCC-------------
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD--------GDQ--KEYAKQKLQL------------- 324 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~--------~~~--~~l~~~~~~v------------- 324 (361)
.++++||.|||+||++|+...|.++++.+.+++.++.++.|++. ..+ ...+++++++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 57889999999999999999999999999998768999999862 110 2222111111
Q ss_pred -------------CCCCe----EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 325 -------------GSFPT----ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 325 -------------~~~Pt----~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
.++|+ .++++..+.....+.| ..+.++|.+.|+++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g-~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP-EEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECC-CCCHHHHHHHHHHh
Confidence 13775 6666443333455555 68999999998876
No 170
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.72 E-value=2.9e-08 Score=86.01 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=88.6
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCCh-HHH--HHHHHhc-CCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDA-VEV--QALVRSK-GLF 84 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~-~~~--~~~~~~~-~~~ 84 (361)
+++|.||||.||+++ +++.+.+.++..+++|.|.....-++.++++++++|+ +.+++.-.. ..+ ..+.... .++
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L~~~~~~v~ 80 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEGYEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSALTDDSIEVP 80 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHHHHHTT----
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCcccCCCcCCc
Confidence 578999999999877 7888888889999999998788889999999999999 877775431 000 0111111 011
Q ss_pred C-------CCccchhchhhcc-ccHHHHHHHccCCEEEEeeeccCCccCccCCCce-ecCCCCcCCcCCCCCeEEEeeCc
Q 018045 85 S-------FYEDGHQECCRVR-KVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVV-QVDPVFEGLEGGVGSLVKWNPVA 155 (361)
Q Consensus 85 ~-------~~~~~~~~cc~~~-K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~Pi~ 155 (361)
. .+..--..-..++ =+...-....+.+.+++|+.++|........+.+ +.-.+.... ....++--..|+.
T Consensus 81 ~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~~~-~~~~~v~i~~P~~ 159 (209)
T PF06508_consen 81 EEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNRLLNL-GEGGPVRIETPLI 159 (209)
T ss_dssp --------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHHH-HHTS--EEE-TTT
T ss_pred ccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHHHHHh-cCCCCEEEEecCC
Confidence 0 0000000001111 0000001111667899999999952222211111 000000000 0012455679999
Q ss_pred cCcHHHHHHHHHhCCCCCCccccCCCC---CCCCCCCC
Q 018045 156 NVKGNDIWNFLRTMDVPINSLHSQGYI---SIGCEPCT 190 (361)
Q Consensus 156 ~W~~~dv~~yi~~~~lp~~~lY~~g~~---~~GC~~Ct 190 (361)
+++..||+....+.++|+..-|.+.-. ..+|-.|+
T Consensus 160 ~~tK~eiv~~~~~lg~~~~~T~SCy~~~~~~~~CG~C~ 197 (209)
T PF06508_consen 160 DLTKAEIVKLGVELGVPLELTWSCYRGGEKGKHCGRCP 197 (209)
T ss_dssp T--HHHHHHHHHHTTHHHHH-B-STTS--BTTTTSSSH
T ss_pred CCCHHHHHHHHHHcCCCHHHccCCCCCCCCCCCCCCCH
Confidence 999999999999999887666655222 24565553
No 171
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.71 E-value=1.6e-07 Score=79.13 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=69.2
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------------chHHHH
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------------QKEYAK 319 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------------~~~l~~ 319 (361)
.++++||+||++||+.|....+.+.++.+++++.++.|+.|..+.. +..++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~- 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA- 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH-
Confidence 5789999999999999999999999999999855799999987641 13456
Q ss_pred HcCCCCCCCeEEEEeCCCCCeeecCC----------CCCCHHHHHHHHHHh
Q 018045 320 QKLQLGSFPTILFFPKHSSKPIKYPS----------ERRDVDSLMAFVDAL 360 (361)
Q Consensus 320 ~~~~v~~~Pt~~~~~~g~~~~~~~~~----------~~~~~~~l~~~i~~~ 360 (361)
+.|++...|++++++.+++ .+ +.+ +..+.+++.+.|+++
T Consensus 103 ~~~~v~~~P~~~lid~~G~-v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGK-LV-YRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HHcCCCcCCcEEEECCCCe-EE-EeecccCCcccccccccHHHHHHHHHHH
Confidence 6889999999999964443 22 221 134667888888764
No 172
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=4.6e-08 Score=78.11 Aligned_cols=139 Identities=16% Similarity=0.268 Sum_probs=87.1
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH---HHHHhcCCCCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ---ALVRSKGLFSF 86 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~---~~~~~~~~~~~ 86 (361)
++++.|||||||.+. -++.+.+.++.+|.++.|.. .+.+++++.++.+|++..+++-+..-.+ +++.+.|.|.
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~--d~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg~P~- 78 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVL--DSWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDGYPR- 78 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhCCCcEEEEEEeccc--cchhhHHHHHHHhCCCcceeccCHHHHHHHHHHHHhcCCCc-
Confidence 578999999999988 46677899999999999963 4678899999999999999876643222 2333444322
Q ss_pred CccchhchhhccccHHHHHHHc-cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHHH
Q 018045 87 YEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNF 165 (361)
Q Consensus 87 ~~~~~~~cc~~~K~~pl~~~~~-~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~y 165 (361)
...+ ++.+ ..++.... .++.+..|.|+|+-. .++...+..+ .+ ..-++-.++||......-|...
T Consensus 79 --~aIq---~iH~-~alE~~A~r~~~~iaDGTRRDDrv---P~ls~~~~qS-LE----dR~nv~Yi~PL~G~G~kti~~L 144 (198)
T COG2117 79 --NAIQ---YIHE-MALEALASREVDRIADGTRRDDRV---PKLSRSEAQS-LE----DRLNVQYIRPLLGLGYKTIRRL 144 (198)
T ss_pred --hHHH---HHHH-HHHHHHHHHHHHHHcCCCcccccC---ccccHHHHhh-HH----HhcCceeecccccccHHHHHHH
Confidence 2222 1111 22222222 577899999999963 2222211110 00 0124556777777766666554
Q ss_pred H
Q 018045 166 L 166 (361)
Q Consensus 166 i 166 (361)
.
T Consensus 145 v 145 (198)
T COG2117 145 V 145 (198)
T ss_pred H
Confidence 4
No 173
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.67 E-value=1.1e-07 Score=92.91 Aligned_cols=144 Identities=16% Similarity=0.185 Sum_probs=93.0
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCc-HH-HHHHHHHHHHHhC--Cc--EEEEcCChHHHHHHHHhcC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLN-PE-TYRFFDEVEKHFG--IR--IEYMFPDAVEVQALVRSKG 82 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~-pe-t~~~v~~~~~~~g--~~--i~~~~p~~~~~~~~~~~~~ 82 (361)
+++++.+|||+||+++ +++.+.+.++..+|+|.|... .+ ..+.++.++++|+ .+ +.++.-. ........ .
T Consensus 178 gk~lvllSGGiDS~va~~~~~krG~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~-~~~~~i~~--~ 254 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFE-PVVGEILE--K 254 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecH-HHHHHHHh--c
Confidence 5899999999999877 888888889999999999643 22 5677788888886 33 5444311 11112211 1
Q ss_pred CCCCCccchhchhhccccHHH---HHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045 83 LFSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 157 (361)
Q Consensus 83 ~~~~~~~~~~~cc~~~K~~pl---~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W 157 (361)
. ....||-.+|+.-+ +++.. +.++++||...+|-. ............. .+..-.+||+.+
T Consensus 255 ~------~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dva-sqtl~nl~~~~~~--------~~~~v~rPLi~~ 319 (482)
T PRK01269 255 V------DDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVS-SQTLTNLRLIDNV--------TDTLILRPLIAM 319 (482)
T ss_pred C------CCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhh-hHHHHHHHhhhhh--------cCCceecCCcCC
Confidence 1 12346656665444 33332 678999999999952 2221111111110 123345999999
Q ss_pred cHHHHHHHHHhCCC
Q 018045 158 KGNDIWNFLRTMDV 171 (361)
Q Consensus 158 ~~~dv~~yi~~~~l 171 (361)
++.||..+.+..|+
T Consensus 320 dK~EIi~~a~~ig~ 333 (482)
T PRK01269 320 DKEDIIDLAREIGT 333 (482)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999999997
No 174
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.67 E-value=8.5e-08 Score=82.15 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=85.8
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcH------HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNP------ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 83 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~p------et~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~ 83 (361)
+++++|||||||+++ +++.+.+.++..+++++..... .-.+.++.+++.+|+++.++.-... ..++.
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~-~e~~~----- 74 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGE-EEDEV----- 74 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCC-chHHH-----
Confidence 578999999999877 8888888888878777654322 2467889999999999887642211 01110
Q ss_pred CCCCccchhchhhccccHHHHHHH-ccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHH
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRAL-KGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDI 162 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~-~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv 162 (361)
..++ .-+.+.. ++.++++.|-..+|. +|......-.. -++..+.||..-..+++
T Consensus 75 ------------~~l~-~~l~~~~~~g~~~vv~G~i~sd~--~~~~~e~~~~~----------~gl~~~~PLW~~~~~~l 129 (194)
T cd01994 75 ------------EDLK-ELLRKLKEEGVDAVVFGAILSEY--QRTRVERVCER----------LGLEPLAPLWGRDQEEL 129 (194)
T ss_pred ------------HHHH-HHHHHHHHcCCCEEEECccccHH--HHHHHHHHHHH----------cCCEEEecccCCCHHHH
Confidence 0000 0111111 157899999999996 45443322111 15668999999999998
Q ss_pred HHHHHhCCCC
Q 018045 163 WNFLRTMDVP 172 (361)
Q Consensus 163 ~~yi~~~~lp 172 (361)
..=+...|+.
T Consensus 130 l~e~~~~g~~ 139 (194)
T cd01994 130 LREMIEAGFK 139 (194)
T ss_pred HHHHHHcCCe
Confidence 8777776653
No 175
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.66 E-value=1.1e-07 Score=80.16 Aligned_cols=85 Identities=9% Similarity=-0.014 Sum_probs=61.2
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEE------EEEEcCCC----------------------------
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV------GKFRADGD---------------------------- 313 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~------~~vd~~~~---------------------------- 313 (361)
.+|.++|+|||.||++|+...|.++++++. ++.+ ..||.++.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 599999999999999999999999999643 2444 55665532
Q ss_pred chHHHHHcCCCCCCCeE-EEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045 314 QKEYAKQKLQLGSFPTI-LFFPKHSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 314 ~~~l~~~~~~v~~~Pt~-~~~~~g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
+..+. ..|++.++|+. ++++..++....+.| ..+.+++.+.+.
T Consensus 134 ~g~v~-~~~gv~~~P~T~fVIDk~GkVv~~~~G-~l~~ee~e~~~~ 177 (184)
T TIGR01626 134 KGAVK-NAWQLNSEDSAIIVLDKTGKVKFVKEG-ALSDSDIQTVIS 177 (184)
T ss_pred cchHH-HhcCCCCCCceEEEECCCCcEEEEEeC-CCCHHHHHHHHH
Confidence 02355 68899999877 677544443555555 678877766554
No 176
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.63 E-value=1.4e-07 Score=87.75 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=89.4
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC---------cHHHHHHHHHHHHHhCCcEEEEcCChHH----HHH
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL---------NPETYRFFDEVEKHFGIRIEYMFPDAVE----VQA 76 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~---------~pet~~~v~~~~~~~g~~i~~~~p~~~~----~~~ 76 (361)
+|+|+.|||-||++. .|+.+.+.++.-+|+.+... .++-++.++++++++|++++++.-.... +..
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~ 81 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEP 81 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHH
T ss_pred eEEEEccCCHHHHHHHHHHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHH
Confidence 799999999999877 88889999988888877754 2456888999999999999988544321 122
Q ss_pred HHHh--cCCCCCCccchhchhhccccHHHHHHHcc---CCEEEEeeeccCCc---cCccCCCceecCC----CCcCCcCC
Q 018045 77 LVRS--KGLFSFYEDGHQECCRVRKVRPLRRALKG---LRAWITGQRKDQSP---GTRSEIPVVQVDP----VFEGLEGG 144 (361)
Q Consensus 77 ~~~~--~~~~~~~~~~~~~cc~~~K~~pl~~~~~~---~~~~i~G~R~~Es~---~~R~~~~~~~~~~----~~~~~~~~ 144 (361)
+++. .|.. | .+.-.|....|...|.+++.. .+.++||+=+.=.. ..+..+.. ..|. .|--..-.
T Consensus 82 f~~~Y~~G~T--P-NPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r-~~D~~KDQSYfL~~l~ 157 (356)
T PF03054_consen 82 FLDEYRKGRT--P-NPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLR-GADPKKDQSYFLSRLP 157 (356)
T ss_dssp HHHHHHTT-------HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE--SSTTC--GGGGTT--
T ss_pred HHHHHhcCCC--C-ChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEe-cCCCCCCceEEEEecC
Confidence 2222 3331 1 233467888999888877764 67999998332211 01111100 1111 11100000
Q ss_pred CC-CeEEEeeCccCcHHHHHHHHHhCCCCC
Q 018045 145 VG-SLVKWNPVANVKGNDIWNFLRTMDVPI 173 (361)
Q Consensus 145 ~~-~~~~~~Pi~~W~~~dv~~yi~~~~lp~ 173 (361)
.. -..-+.||-+++.+||.+..++.|||.
T Consensus 158 ~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~ 187 (356)
T PF03054_consen 158 QEQLSRLIFPLGELTKEEVREIAREAGLPV 187 (356)
T ss_dssp HHHHCCEE-TCCCS-HHHHHHHHHHCT-TT
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHhcCCcc
Confidence 00 012489999999999999999999983
No 177
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.62 E-value=1.7e-07 Score=66.70 Aligned_cols=69 Identities=19% Similarity=0.367 Sum_probs=53.8
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCCCCCCeEEEEeCCCCCeeecCCCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 348 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~ 348 (361)
+..|+++||++|+.+.+.+++. ++.+..+|++.+ .. +. +.+++.++|++++. |+ . ..| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~-~~~~~~~~-~~~~~~~vP~~~~~--~~--~--~~g--~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-------GIAFEEIDVEKD-SAAREEVL-KVLGQRGVPVIVIG--HK--I--IVG--F 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------CCeEEEEeccCC-HHHHHHHH-HHhCCCcccEEEEC--CE--E--Eee--C
Confidence 5789999999999999888651 588999999877 43 45 67899999999985 43 2 333 5
Q ss_pred CHHHHHHHHH
Q 018045 349 DVDSLMAFVD 358 (361)
Q Consensus 349 ~~~~l~~~i~ 358 (361)
+.+.|.++|+
T Consensus 65 ~~~~i~~~i~ 74 (74)
T TIGR02196 65 DPEKLDQLLE 74 (74)
T ss_pred CHHHHHHHhC
Confidence 7788888874
No 178
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.60 E-value=1.8e-07 Score=77.17 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=39.2
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 311 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~ 311 (361)
.+++++|+|||+||+ |+...|.++++.+++++.++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 478999999999999 9999999999999998667999999764
No 179
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.60 E-value=3.4e-07 Score=82.31 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=74.9
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhH------HHHHHHHHH-hcCCCeEEEEEEcCCCchHHHHHc
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAME------GSYVELADK-LAGNGVKVGKFRADGDQKEYAKQK 321 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~------p~~~~la~~-~~~~~v~~~~vd~~~~~~~l~~~~ 321 (361)
..|..||.+||+++++ +.+..+|+||.|-- .-+... ..+-+|+++ +...++.|+.||..++ ..++ ++
T Consensus 34 DRVi~LneKNfk~~lK---kyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd-~klA-KK 107 (383)
T PF01216_consen 34 DRVIDLNEKNFKRALK---KYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD-AKLA-KK 107 (383)
T ss_dssp --CEEE-TTTHHHHHH---H-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT-HHHH-HH
T ss_pred cceEEcchhHHHHHHH---hhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH-HHHH-Hh
Confidence 5699999999999987 88899999998863 333332 223344444 4446899999999999 9999 99
Q ss_pred CCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 322 LQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 322 ~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+++...+++.+|++|. .+.|.| .++++.|++||-.+
T Consensus 108 Lgv~E~~SiyVfkd~~--~IEydG-~~saDtLVeFl~dl 143 (383)
T PF01216_consen 108 LGVEEEGSIYVFKDGE--VIEYDG-ERSADTLVEFLLDL 143 (383)
T ss_dssp HT--STTEEEEEETTE--EEEE-S---SHHHHHHHHHHH
T ss_pred cCccccCcEEEEECCc--EEEecC-ccCHHHHHHHHHHh
Confidence 9999999999999999 899997 89999999999754
No 180
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.59 E-value=2.7e-07 Score=71.42 Aligned_cols=67 Identities=33% Similarity=0.610 Sum_probs=61.0
Q ss_pred CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCchHHHHHcCC--CCCCCeEEEEeCCCC
Q 018045 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQ--LGSFPTILFFPKHSS 338 (361)
Q Consensus 269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~~~~~--v~~~Pt~~~~~~g~~ 338 (361)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .. ..+. ..|+ +..+|+++++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~-~~~~-~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDEN-PDLA-AEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCC-hHHH-HHHhhhhccCCeEEEEeCcch
Confidence 78999999999999999999999999999986 6899999997 67 7888 8899 999999999988874
No 181
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.59 E-value=1.2e-07 Score=76.37 Aligned_cols=69 Identities=16% Similarity=0.365 Sum_probs=57.6
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCc------------------------hHHHHHc
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQ------------------------KEYAKQK 321 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~--~v~~~~vd~~~~~------------------------~~l~~~~ 321 (361)
.+|.|.++|.|.||++|+.+-|++.++.+..+.. .+.++-|+.|.+. ++++ ++
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~-~k 110 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS-EK 110 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH-Hh
Confidence 5799999999999999999999999999998872 3777777766542 4677 89
Q ss_pred CCCCCCCeEEEEeCCC
Q 018045 322 LQLGSFPTILFFPKHS 337 (361)
Q Consensus 322 ~~v~~~Pt~~~~~~g~ 337 (361)
|.|.++|++++.+..+
T Consensus 111 y~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDG 126 (157)
T ss_pred cccCcCceeEEecCCC
Confidence 9999999999995544
No 182
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-06 Score=69.87 Aligned_cols=92 Identities=18% Similarity=0.344 Sum_probs=71.7
Q ss_pred hhcCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc---------------hHHHHHcCCCC
Q 018045 264 RLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ---------------KEYAKQKLQLG 325 (361)
Q Consensus 264 ~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~---------------~~l~~~~~~v~ 325 (361)
.....++..++.|-++.|+.|..|+..+ .++.+.+.+ ++.++.+|+...+ ++|+ +.|.|+
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa-~kf~vr 114 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELA-QKFAVR 114 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHH-HHhccc
Confidence 3345799999999999999999999876 556666776 7888888875431 5899 999999
Q ss_pred CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045 326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
++||+++|+..++......| ...++++...++
T Consensus 115 stPtfvFfdk~Gk~Il~lPG-Y~ppe~Fl~vlk 146 (182)
T COG2143 115 STPTFVFFDKTGKTILELPG-YMPPEQFLAVLK 146 (182)
T ss_pred cCceEEEEcCCCCEEEecCC-CCCHHHHHHHHH
Confidence 99999999655443444454 888888877665
No 183
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.54 E-value=8.3e-07 Score=77.22 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=69.0
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----------CchHHHHHcCCCCCCCeEEEEeCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----------DQKEYAKQKLQLGSFPTILFFPKH 336 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----------~~~~l~~~~~~v~~~Pt~~~~~~g 336 (361)
.++.-|++||.+.|+.|+.+.|++..+++.+ ++.+..|++|. + ..++ ++++|..+|++++...+
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~-~g~~-~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPD-PGQA-KRLGVKVTPALFLVNPN 193 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCC-HHHH-HHcCCCcCCEEEEEECC
Confidence 3778899999999999999999999999999 36777777763 3 7888 89999999999999776
Q ss_pred CCCeeecCCCCCCHHHHHHHH
Q 018045 337 SSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~i 357 (361)
.........|..+.++|.+-|
T Consensus 194 ~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 194 TKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCeEEEEeeecCCHHHHHHhh
Confidence 644444444578999987643
No 184
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.53 E-value=4.6e-07 Score=61.94 Aligned_cols=61 Identities=39% Similarity=0.765 Sum_probs=51.4
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH--HcCCCCCCCeEEEEeCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKH 336 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~--~~~~v~~~Pt~~~~~~g 336 (361)
++.|+++||++|+.+.+.+.++ +.... ++.+..+|++.. ..... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK-GVKFEAVDVDED-PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC-CcEEEEEEcCCC-hHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999999 33333 799999999998 66552 27899999999999877
No 185
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.7e-06 Score=79.49 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=107.0
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCC-------CcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHH
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGR-------LNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QAL 77 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~-------~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~~~ 77 (361)
.+|+|++|||-||.|. .|+.+.+.+|..+|+.... ..++-++.++++++++|+++.++.-...-+ ..+
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f 83 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYF 83 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHH
Confidence 5899999999998776 8888889998888876654 345677789999999999999885443322 233
Q ss_pred HHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCcc--CCCc-e--ecCCCCcC-CcCCCCCeE
Q 018045 78 VRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRS--EIPV-V--QVDPVFEG-LEGGVGSLV 149 (361)
Q Consensus 78 ~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~--~~~~-~--~~~~~~~~-~~~~~~~~~ 149 (361)
...++.-..| .+.-.|....|-..+..++. +.+.++||+=+-..+ ... .+.. . .-|-+|-- ......--.
T Consensus 84 ~~~Y~~G~TP-NPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~-~~~~~~l~r~~D~~KDQsYfL~~~~~~ql~~ 161 (356)
T COG0482 84 LAEYKAGKTP-NPCILCNKEIKFKALLDYAKELGADYIATGHYARQRE-DEGIELLLRGVDLNKDQSYFLYALSQEQLER 161 (356)
T ss_pred HHHHhCCCCC-CcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeec-CCcccccccCCCcccchhheecccCHHHHhh
Confidence 3333221112 12335679999988888877 557899997544432 111 1100 0 01111110 000000012
Q ss_pred EEeeCccCcHHHHHHHHHhCCCCCCcccc
Q 018045 150 KWNPVANVKGNDIWNFLRTMDVPINSLHS 178 (361)
Q Consensus 150 ~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~ 178 (361)
.+.||-+++..+|.....+.+||...-=|
T Consensus 162 ~lFPlG~l~K~evR~iA~~~gL~~a~Kkd 190 (356)
T COG0482 162 LLFPLGDLEKLEVRPIAAEKGLPTAKKKD 190 (356)
T ss_pred ccccCCCCCHHHHHHHHHHcCCCccCccc
Confidence 37899999999999999999998865543
No 186
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.51 E-value=6.4e-07 Score=76.81 Aligned_cols=170 Identities=17% Similarity=0.237 Sum_probs=103.5
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE 88 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~ 88 (361)
.+.+|-||||-||+++ +++.+.+..+..++.|-|.-...-++.++++++++|++.+++.-+.. .+ .+...+-+
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~--~~----~~~saLtd 76 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLL--GE----IGGSALTD 76 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHhcCCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHH--hh----cCCCcCcC
Confidence 4678999999999866 88999889999999999977799999999999999999988743321 11 11000000
Q ss_pred c-----chhchhhccc--cHHHHHHH-----------ccCCEEEEeeeccCCccCccC-CC----ceecCCCCcCCcCCC
Q 018045 89 D-----GHQECCRVRK--VRPLRRAL-----------KGLRAWITGQRKDQSPGTRSE-IP----VVQVDPVFEGLEGGV 145 (361)
Q Consensus 89 ~-----~~~~cc~~~K--~~pl~~~~-----------~~~~~~i~G~R~~Es~~~R~~-~~----~~~~~~~~~~~~~~~ 145 (361)
. .....-...+ ..|.+..+ .+.+.+++|+...|.. .=.. .+ .++.--.+ +..
T Consensus 77 ~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~s-gYPDcrpefi~a~~~~~~l----~~~ 151 (222)
T COG0603 77 DSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFS-GYPDCRPEFIEALNEALNL----GTE 151 (222)
T ss_pred CCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccC-CCCCCCHHHHHHHHHHHHh----hcc
Confidence 0 0000000000 11222111 1567899999999973 2110 00 00000000 011
Q ss_pred CCeE-EEeeCccCcHHHHHHHHHhCCCCCCccccC--CCCCCCCCCCC
Q 018045 146 GSLV-KWNPVANVKGNDIWNFLRTMDVPINSLHSQ--GYISIGCEPCT 190 (361)
Q Consensus 146 ~~~~-~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~--g~~~~GC~~Ct 190 (361)
.++. -..||.+++..++|.--.+.|+|+..=+.+ |-..-+|=-|.
T Consensus 152 ~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~SCY~g~~~~~CG~C~ 199 (222)
T COG0603 152 KGVRIIHAPLMELTKAEIVKLADELGVPLELTWSCYNGGEGDHCGECE 199 (222)
T ss_pred CCccEEeCCeeeccHHHHHHHHHHhCCcchhceEEeCCCCCCCCCCCH
Confidence 2233 379999999999999999999998776543 22222565554
No 187
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.49 E-value=4.6e-07 Score=69.52 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=34.4
Q ss_pred EEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC--cHHHHHHHHH
Q 018045 12 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--NPETYRFFDE 55 (361)
Q Consensus 12 i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~--~pet~~~v~~ 55 (361)
++|++|||+||+++ +++.+.+.++.++|+|.+.. .++..+++++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTVDHGISPRLEDAKEIAKE 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCCCEEEEEEcCCCcccHHHHHHHHHH
Confidence 57999999999877 88888877899999999976 3444444444
No 188
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.47 E-value=9.8e-07 Score=71.51 Aligned_cols=88 Identities=10% Similarity=0.109 Sum_probs=65.5
Q ss_pred CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------chHHHHHcCCCCC
Q 018045 268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS 326 (361)
Q Consensus 268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~v~~ 326 (361)
.+++++|.|| +.||+.|....+.+.++.+.+.+.++.++.|..+.. +..+. +.|++..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLA-KAYGVWG 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHH-HHhCCcc
Confidence 4789999999 589999999999999999998765788888876543 14566 6788888
Q ss_pred C---------CeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 327 F---------PTILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 327 ~---------Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
. |+++++++.++....+.| .....++.+-+
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g-~~~~~~~~~~~ 139 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRK-VKPKGHAEEVL 139 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEec-CCccchHHHHh
Confidence 7 899999754443455555 45556655543
No 189
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.44 E-value=1.1e-06 Score=63.17 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=50.1
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHc-----CCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK-----LQLGSFPTILFFPKHSSKPIKYPSER 347 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~-----~~v~~~Pt~~~~~~g~~~~~~~~~~~ 347 (361)
++.|+++||++|+.+++.+.++ ++.+-.+|++++ .... .. +++.++|++ ++.+|. ... .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~-~~~~-~~~~~~~~~~~~vP~i-~~~~g~--~l~----~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEED-EGAA-DRVVSVNNGNMTVPTV-KFADGS--FLT----N 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCC-HhHH-HHHHHHhCCCceeCEE-EECCCe--Eec----C
Confidence 6789999999999999988665 356667888877 5544 34 488999997 576665 322 2
Q ss_pred CCHHHHHHHHH
Q 018045 348 RDVDSLMAFVD 358 (361)
Q Consensus 348 ~~~~~l~~~i~ 358 (361)
.+..++.+.|+
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 34567766654
No 190
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.41 E-value=1.4e-06 Score=68.99 Aligned_cols=69 Identities=25% Similarity=0.546 Sum_probs=59.4
Q ss_pred CCCcEEEEEECC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------hHHHHHcCCCC-
Q 018045 268 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLG- 325 (361)
Q Consensus 268 ~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~~v~- 325 (361)
.+++++|.||+. ||+.|+...+.+.++.++++..++.++.|..+..+ ..++ +.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELA-KAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHH-HHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHH-HHcCCcc
Confidence 579999999999 99999999999999999998767999999886541 4567 788888
Q ss_pred -----CCCeEEEEeCCC
Q 018045 326 -----SFPTILFFPKHS 337 (361)
Q Consensus 326 -----~~Pt~~~~~~g~ 337 (361)
.+|+++++.+++
T Consensus 103 ~~~~~~~p~~~lid~~g 119 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDG 119 (124)
T ss_dssp TTTSEESEEEEEEETTS
T ss_pred ccCCceEeEEEEECCCC
Confidence 899999997766
No 191
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.40 E-value=1.7e-06 Score=67.42 Aligned_cols=97 Identities=15% Similarity=0.311 Sum_probs=59.5
Q ss_pred ccHHHHHhh-cCCCCcEEEEEEC-------CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc------hHHHHH--
Q 018045 257 TGMENLARL-DHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ------KEYAKQ-- 320 (361)
Q Consensus 257 ~~f~~~~~~-~~~~~~vlv~F~a-------~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~------~~l~~~-- 320 (361)
++|.++++. .+++++++|+|++ +|||.|+...|.+++..+.... +..|+.|.+.... ..+- +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR-~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFR-TDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHH-H--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCce-Ecc
Confidence 345555543 2356899999996 5999999999999998888665 7889888874320 2333 3
Q ss_pred cCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045 321 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 321 ~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
++++.++||++-+..+++ ...-. -.+.+.+..|++
T Consensus 84 ~~~l~~IPTLi~~~~~~r-L~e~e--~~~~~lv~~~~e 118 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGER-LVEEE--CLNEDLVEMFFE 118 (119)
T ss_dssp CC---SSSEEEECTSS-E-EEHHH--HH-HHHHHHHHH
T ss_pred eeeeeecceEEEECCCCc-cchhh--hccHHHHHHHhc
Confidence 599999999999987742 22221 234455555544
No 192
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.39 E-value=2.5e-06 Score=72.93 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=67.6
Q ss_pred CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------chHHHHHcC
Q 018045 268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL 322 (361)
Q Consensus 268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~ 322 (361)
.++++||+|| +.||+.|....|.|.++.+++.+.++.++.|.++.. +..++ +.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a-~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLT-RNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHH-HHh
Confidence 4789999999 999999999999999999999765677887776531 13566 788
Q ss_pred CCC------CCCeEEEEe-CCCCCeeecC--CCCCCHHHHHHHHHHh
Q 018045 323 QLG------SFPTILFFP-KHSSKPIKYP--SERRDVDSLMAFVDAL 360 (361)
Q Consensus 323 ~v~------~~Pt~~~~~-~g~~~~~~~~--~~~~~~~~l~~~i~~~ 360 (361)
++. ..|+.++++ +|+.....+. ...++.+++.+.|+++
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 886 459889985 5553222211 1235888898888765
No 193
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.38 E-value=6.7e-06 Score=69.78 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=86.1
Q ss_pred CCceecCcccHHHHHhhcCCCCc-EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC--
Q 018045 249 QNLVTLNRTGMENLARLDHRQEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG-- 325 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~-vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~-- 325 (361)
+.|.++|.+++..+.. .+.+ +++.|..........+...++++++.+++ .+.|+.+|++.. +.+. +.+++.
T Consensus 77 P~v~~~t~~n~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~-~~~~-~~~~i~~~ 150 (184)
T PF13848_consen 77 PLVPELTPENFEKLFS---SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDF-PRLL-KYFGIDED 150 (184)
T ss_dssp TSCEEESTTHHHHHHS---TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTT-HHHH-HHTTTTTS
T ss_pred ccccccchhhHHHHhc---CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHh-HHHH-HHcCCCCc
Confidence 5689999999999886 5655 88888877788899999999999999998 899999999988 8899 899998
Q ss_pred CCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHH
Q 018045 326 SFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 326 ~~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~ 359 (361)
.+|++++++..... ...+.+ ..+.++|.+||++
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~-~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEG-EITPESIEKFLND 184 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SS-CGCHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCC-CCCHHHHHHHhcC
Confidence 89999999844332 222344 7999999999974
No 194
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.8e-06 Score=65.56 Aligned_cols=78 Identities=15% Similarity=0.293 Sum_probs=61.7
Q ss_pred ccHHHHHhhcCCCCcEEEEEEC--------CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc------hHHHHHcC
Q 018045 257 TGMENLARLDHRQEPWLVVLYA--------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ------KEYAKQKL 322 (361)
Q Consensus 257 ~~f~~~~~~~~~~~~vlv~F~a--------~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~------~~l~~~~~ 322 (361)
++|++.++...+++.++|+|++ +|||.|.+.+|.+.+.-+.... ++.|+.|++.+-. ..+- ...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR-~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFR-KDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccc-cCC
Confidence 5677777666567779999997 7999999999999999887666 8999999986431 3444 556
Q ss_pred CC-CCCCeEEEEeCC
Q 018045 323 QL-GSFPTILFFPKH 336 (361)
Q Consensus 323 ~v-~~~Pt~~~~~~g 336 (361)
++ .++||++=++++
T Consensus 91 ~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 91 GILTAVPTLLRWKRQ 105 (128)
T ss_pred CceeecceeeEEcCc
Confidence 66 899999999853
No 195
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.37 E-value=3.4e-06 Score=71.82 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=37.4
Q ss_pred CCCcE-EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045 268 RQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 311 (361)
Q Consensus 268 ~~~~v-lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~ 311 (361)
.++++ ++.+||+||++|+..+|.++++.+.+++.++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 46654 456699999999999999999999998767999999864
No 196
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.36 E-value=1.1e-06 Score=72.04 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=54.8
Q ss_pred ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHH-H--HHHHHHhcCCCeEEEEEEcCCCchHHHHHcC-------
Q 018045 253 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGDQKEYAKQKL------- 322 (361)
Q Consensus 253 ~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~------- 322 (361)
..+++.|+...+ ++|+++|.++++||..|+.|..+ | .++++.++. ++.-++||.++. +++. ..|
T Consensus 24 ~w~~ea~~~Ak~---e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~-Pdid-~~y~~~~~~~ 97 (163)
T PF03190_consen 24 PWGEEALEKAKK---ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREER-PDID-KIYMNAVQAM 97 (163)
T ss_dssp -SSHHHHHHHHH---HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT--HHHH-HHHHHHHHHH
T ss_pred cCCHHHHHHHHh---cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccC-ccHH-HHHHHHHHHh
Confidence 345566777665 89999999999999999999974 3 668888876 788899999988 8888 676
Q ss_pred -CCCCCCeEEEEeCCC
Q 018045 323 -QLGSFPTILFFPKHS 337 (361)
Q Consensus 323 -~v~~~Pt~~~~~~g~ 337 (361)
+..++|+.+|.....
T Consensus 98 ~~~gGwPl~vfltPdg 113 (163)
T PF03190_consen 98 SGSGGWPLTVFLTPDG 113 (163)
T ss_dssp HS---SSEEEEE-TTS
T ss_pred cCCCCCCceEEECCCC
Confidence 788999999985443
No 197
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.32 E-value=9.2e-07 Score=73.09 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=72.6
Q ss_pred CceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 250 NLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 250 ~v~~l~-~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
...++. ..+|-+... +...|++.||-|.-..|+-|-..++.||..+-+ ..|++||++.. +-|+ .+++|.-+|
T Consensus 67 ~y~ev~~Ekdf~~~~~---kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae~~-PFlv-~kL~IkVLP 139 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVK---KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAEKA-PFLV-TKLNIKVLP 139 (211)
T ss_pred eEEEeccHHHHHHHhh---cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecccC-ceee-eeeeeeEee
Confidence 345554 566666665 788999999999999999999999999999976 89999999999 9999 999999999
Q ss_pred eEEEEeCCCC
Q 018045 329 TILFFPKHSS 338 (361)
Q Consensus 329 t~~~~~~g~~ 338 (361)
++++|++|+.
T Consensus 140 ~v~l~k~g~~ 149 (211)
T KOG1672|consen 140 TVALFKNGKT 149 (211)
T ss_pred eEEEEEcCEE
Confidence 9999999984
No 198
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.31 E-value=5.5e-06 Score=64.74 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=71.4
Q ss_pred cHHHHHhh-cCCCCcEEEEEECC----CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEE
Q 018045 258 GMENLARL-DHRQEPWLVVLYAP----WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTIL 331 (361)
Q Consensus 258 ~f~~~~~~-~~~~~~vlv~F~a~----wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~ 331 (361)
+|+++++. .++.|.++|++|++ ||..|+.... =+++.+.++. ++.+...|++..+ ..++ ..+++.++|+++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~-~fv~w~~dv~~~eg~~la-~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT-RMLFWACSVAKPEGYRVS-QALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc-CEEEEEEecCChHHHHHH-HHhCCCCCCEEE
Confidence 45554433 34689999999999 8888865541 1445555555 7899999998663 5688 899999999999
Q ss_pred EEe--CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 332 FFP--KHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 332 ~~~--~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
++. +++...+....|..++++|...|+.+
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 993 33333344444589999999998764
No 199
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.31 E-value=5.3e-06 Score=69.95 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=66.6
Q ss_pred CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHH
Q 018045 268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAK 319 (361)
Q Consensus 268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~ 319 (361)
.++.+||+|| +.||++|....+.++++++++.+.++.++.|.++... ..++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~- 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS- 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH-
Confidence 4689999999 8999999999999999999997657888888765420 2455
Q ss_pred HcCCCC------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045 320 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL 360 (361)
Q Consensus 320 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~ 360 (361)
+.|++. ..|+.+++++.......+.+ ...+.+++.+.|+++
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 567775 56899999644433333321 134678888888764
No 200
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=98.30 E-value=2.9e-06 Score=72.33 Aligned_cols=145 Identities=18% Similarity=0.181 Sum_probs=76.1
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCC-CCcHHHHHHHHHHHHHh---C--CcEEEEcCChHHHHHHHHhcC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHF---G--IRIEYMFPDAVEVQALVRSKG 82 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg-~~~pet~~~v~~~~~~~---g--~~i~~~~p~~~~~~~~~~~~~ 82 (361)
.++++.+|||-||.|. .|+.+.|.++..+|.+++ +.-+.+.+.++++.+.+ + .++..+.-+.......+....
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~krG~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMKRGCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHCBT-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred ceEEEEecCCccHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 5789999999999776 888999999999999854 33344555555555554 3 344443333333332222221
Q ss_pred CCCCCccchhchhhccccHHHHHHHc-----cCCEEEEeeeccCCc-cCccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045 83 LFSFYEDGHQECCRVRKVRPLRRALK-----GLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 156 (361)
Q Consensus 83 ~~~~~~~~~~~cc~~~K~~pl~~~~~-----~~~~~i~G~R~~Es~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~ 156 (361)
.....|-.+|+.-++.+-+ +.++++||--..|-. ++..++..++... +..-++||+.
T Consensus 84 -------~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~nL~~i~~~~----------~~pIlRPLig 146 (197)
T PF02568_consen 84 -------KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLENLRVIESAS----------DLPILRPLIG 146 (197)
T ss_dssp --------GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHHHHHHGGG------------S-EE-TTTT
T ss_pred -------CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHHHhhhhccc----------CCceeCCcCC
Confidence 2334566666655554443 667888874333311 0112233322221 3457999999
Q ss_pred CcHHHHHHHHHhCCC
Q 018045 157 VKGNDIWNFLRTMDV 171 (361)
Q Consensus 157 W~~~dv~~yi~~~~l 171 (361)
++.+||-+..++-|.
T Consensus 147 ~dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 147 FDKEEIIEIARKIGT 161 (197)
T ss_dssp --HHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHhCc
Confidence 999999999999886
No 201
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.29 E-value=1e-05 Score=68.94 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=69.3
Q ss_pred CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------chHHHHHcC
Q 018045 268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL 322 (361)
Q Consensus 268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~ 322 (361)
.++.++|.|| ++||+.|....+.|.++.+++...++.++.|..|.. +..++ +.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia-~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALT-RNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHH-HHc
Confidence 4678999999 999999999999999999999765777887776542 14677 788
Q ss_pred CC----CCC--CeEEEEe-CCCCCeee-c-CCCCCCHHHHHHHHHHhC
Q 018045 323 QL----GSF--PTILFFP-KHSSKPIK-Y-PSERRDVDSLMAFVDALR 361 (361)
Q Consensus 323 ~v----~~~--Pt~~~~~-~g~~~~~~-~-~~~~~~~~~l~~~i~~~~ 361 (361)
++ .++ |+.++++ +|+..... + ....++.+++.+.|+.++
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 88 356 9999996 44422111 1 122468999999998764
No 202
>PTZ00323 NAD+ synthase; Provisional
Probab=98.28 E-value=1.3e-05 Score=72.93 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=85.7
Q ss_pred CcEEEEecchHHHHHH-HHHHHc-CC-C---ceEEEccCCC-CcHHHHHHHHHHHHHhCCcEEEEcCChH--HHHHHHHh
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT-GR-P---FRVFSLDTGR-LNPETYRFFDEVEKHFGIRIEYMFPDAV--EVQALVRS 80 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~-~~-~---i~v~~~dtg~-~~pet~~~v~~~~~~~g~~i~~~~p~~~--~~~~~~~~ 80 (361)
++++|++|||-||+++ .|+.+. +. . ..++.+.... .-+.+.+-++.+++.+|++++++.-+.. .+...+..
T Consensus 47 ~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~ 126 (294)
T PTZ00323 47 KGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEK 126 (294)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhh
Confidence 6899999999999877 666663 32 1 2344444332 3678999999999999999887744421 11111111
Q ss_pred c-CCCC--CCccchhchhhccccHHHHHHH--ccCCEEEEee-eccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeC
Q 018045 81 K-GLFS--FYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 154 (361)
Q Consensus 81 ~-~~~~--~~~~~~~~cc~~~K~~pl~~~~--~~~~~~i~G~-R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi 154 (361)
. +... +.....+...+..-..-+.... .+...++.|. +++|-. . .+......| +...+.||
T Consensus 127 ~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~-~-~Gy~t~~GD-----------g~~d~~pi 193 (294)
T PTZ00323 127 AVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDG-Y-LGYFCKAGD-----------GVVDVQLI 193 (294)
T ss_pred hhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhh-H-hchHhhcCC-----------CCcCchhh
Confidence 0 1000 0000011111110001111111 1445889999 888841 1 132222222 45679999
Q ss_pred ccCcHHHHHHHHHhCCCC
Q 018045 155 ANVKGNDIWNFLRTMDVP 172 (361)
Q Consensus 155 ~~W~~~dv~~yi~~~~lp 172 (361)
.+++..||+...+..++|
T Consensus 194 a~L~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 194 SDLHKSEVFLVARELGVP 211 (294)
T ss_pred cCCcHHHHHHHHHHcCCC
Confidence 999999999999988765
No 203
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.28 E-value=3.3e-05 Score=59.42 Aligned_cols=104 Identities=19% Similarity=0.370 Sum_probs=80.2
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHH-HHhcC-CCeEEEEEEcCC----CchHHHHHcC
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELA-DKLAG-NGVKVGKFRADG----DQKEYAKQKL 322 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la-~~~~~-~~v~~~~vd~~~----~~~~l~~~~~ 322 (361)
...+.|+.-+|++++. ..+.+||.|=... |--.-...|.++| +..+. +++-++.|-+.. .+.+|+ ++|
T Consensus 4 ~G~v~LD~~tFdKvi~---kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~La-ery 77 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIP---KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELA-ERY 77 (126)
T ss_dssp TTSEEESTTHHHHHGG---GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHH-HHT
T ss_pred Cceeeccceehhheec---cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHH-HHh
Confidence 3467899999999997 8899999998765 4455677899999 55443 479999998754 238999 999
Q ss_pred CC--CCCCeEEEEeCCCCCeeec--CCCCCCHHHHHHHHHH
Q 018045 323 QL--GSFPTILFFPKHSSKPIKY--PSERRDVDSLMAFVDA 359 (361)
Q Consensus 323 ~v--~~~Pt~~~~~~g~~~~~~~--~~~~~~~~~l~~~i~~ 359 (361)
+| +.+|.+++|..+...++.| .+ ..+.++|..|+++
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~-~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDG-DVTADNLQRFVKS 117 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS--S-HHHHHHHHHH
T ss_pred CCCcccCCEEEEecCCCCCCccCCccC-CccHHHHHHHHHh
Confidence 99 6799999999777778888 55 7999999999975
No 204
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.28 E-value=3.3e-06 Score=73.82 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=81.0
Q ss_pred EEEecchHHHHHH-HHHHHcCCCce-EEEccCCC-----CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCC
Q 018045 13 AIAFSGAEDVALI-EYAHLTGRPFR-VFSLDTGR-----LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFS 85 (361)
Q Consensus 13 ~vs~SGGKDS~~l-~l~~~~~~~i~-v~~~dtg~-----~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~ 85 (361)
+++|||||||+++ +++.+.+.++. +++++... ....-.+.++.+++.+|+++.++.-+...... .
T Consensus 1 ~vl~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~-~------- 72 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKE-V------- 72 (218)
T ss_pred CeeecCcHHHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHH-H-------
Confidence 3789999999877 88888877764 55655431 11223578899999999998776432100000 0
Q ss_pred CCccchhchhhccccHHHHHHHc-cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHH
Q 018045 86 FYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 164 (361)
Q Consensus 86 ~~~~~~~~cc~~~K~~pl~~~~~-~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~ 164 (361)
.. +. ..+.++.+ +.+.+++|...++- +|.....+... .++.-+.||+.++.+++..
T Consensus 73 -----~~-----l~-~~l~~~~~~g~~~vv~G~i~sd~--~~~~~e~v~~~----------~gl~~~~PLw~~~~~el~~ 129 (218)
T TIGR03679 73 -----ED-----LK-GALKELKREGVEGIVTGAIASRY--QKSRIERICEE----------LGLKVFAPLWGRDQEEYLR 129 (218)
T ss_pred -----HH-----HH-HHHHHHHHcCCCEEEECCcccHh--HHHHHHHHHHh----------CCCeEEeehhcCCHHHHHH
Confidence 00 00 11122222 67899999999875 34333322211 2566899999999999999
Q ss_pred HHHhCCCC
Q 018045 165 FLRTMDVP 172 (361)
Q Consensus 165 yi~~~~lp 172 (361)
-+...|+.
T Consensus 130 ~~~~~G~~ 137 (218)
T TIGR03679 130 ELVERGFR 137 (218)
T ss_pred HHHHCCCE
Confidence 88877753
No 205
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.26 E-value=9e-06 Score=67.12 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCCcEEEEEECC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------hHHHHHcCCCCC
Q 018045 268 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLGS 326 (361)
Q Consensus 268 ~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~~v~~ 326 (361)
++++++|.||+. ||+.|....+.+.++.+.+++.++.++.|..+..+ ..+. +.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVA-EQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHH-HHhCCCc
Confidence 578999999976 68889999999999999998767888888875431 3566 6788764
Q ss_pred C------------CeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045 327 F------------PTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 327 ~------------Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
. |+.++++..+.....+.| ....+.+.+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g-~~~~~~~~~~~~ 150 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDK-FKTSNHHDVVLD 150 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcC-CCcchhHHHHHH
Confidence 3 677788543333445554 343444444443
No 206
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.25 E-value=8.6e-06 Score=72.20 Aligned_cols=87 Identities=21% Similarity=0.183 Sum_probs=69.1
Q ss_pred CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------chHHHHHcCCCCCCCeEEEEeCCCC
Q 018045 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHSS 338 (361)
Q Consensus 269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------~~~l~~~~~~v~~~Pt~~~~~~g~~ 338 (361)
++.-|++||.+.|+.|+.+.|++..+++.++ +.+..|++|.. +..++ ++++|..+|++++...+..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIPISVDGTLIPGLPNSRSDSGQA-QHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCccCChHHH-HhcCCccCceEEEEECCCC
Confidence 5588999999999999999999999999994 67777776643 14577 8999999999999977655
Q ss_pred CeeecCCCCCCHHHHHHHHHH
Q 018045 339 KPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~i~~ 359 (361)
......-|..+.++|.+-|-.
T Consensus 226 ~~~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 226 KMSPLAYGFISQDELKERILN 246 (256)
T ss_pred cEEEEeeccCCHHHHHHHHHH
Confidence 444444457999999876654
No 207
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.25 E-value=1.4e-06 Score=77.25 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=90.1
Q ss_pred HHhHhC-CcEEEEecchHHHHHH-HHHHH-cC-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045 4 ALEKFG-NDIAIAFSGAEDVALI-EYAHL-TG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR 79 (361)
Q Consensus 4 ~~~~~~-~~i~vs~SGGKDS~~l-~l~~~-~~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~ 79 (361)
.+++.+ ++++|++|||-||+++ .|+.+ .+ .++..++++++...+++.+-+..+++.+|+++.++.-+. .+..+..
T Consensus 12 ~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~-~~~~~~~ 90 (242)
T PF02540_consen 12 YVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDP-IFDAFLK 90 (242)
T ss_dssp HHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHH-HHHHHHH
T ss_pred HHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccchHH-HHHHHhh
Confidence 344444 6899999999999877 67776 44 467889999999999999999999999999988774332 1222211
Q ss_pred hcCCCCCCccchh--chhhccccHHHHHHHccCCEEEEee-eccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045 80 SKGLFSFYEDGHQ--ECCRVRKVRPLRRALKGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 156 (361)
Q Consensus 80 ~~~~~~~~~~~~~--~cc~~~K~~pl~~~~~~~~~~i~G~-R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~ 156 (361)
.... ...... .-+...++..+..+.......+.|. +++|.. ... -.+|+ .+..-+.||.+
T Consensus 91 ~~~~---~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~lVlgT~N~sE~~---~Gy-----~T~~G------D~~~d~~Pi~~ 153 (242)
T PF02540_consen 91 SLEP---ADDDLARGNIQARIRMTTLYALANKYNYLVLGTGNKSELL---LGY-----FTKYG------DGAGDIAPIAD 153 (242)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTEEEBE--CHHHHH---HTC-----SHTTT------TTSSSBETTTT
T ss_pred hhcc---chhhhhhhhHHHHHHHHHHHHHhcccceEEecCCcHHHhh---cCc-----ccccC------cccccceeeCC
Confidence 1000 000000 0112222222222222334555544 222221 111 11121 11224799999
Q ss_pred CcHHHHHHHHHhCCCCCCcc
Q 018045 157 VKGNDIWNFLRTMDVPINSL 176 (361)
Q Consensus 157 W~~~dv~~yi~~~~lp~~~l 176 (361)
....+|++..+..++|-.-+
T Consensus 154 L~K~eV~~la~~l~ip~~ii 173 (242)
T PF02540_consen 154 LYKTEVRELARYLGIPEEII 173 (242)
T ss_dssp S-HHHHHHHHHHTTCGHHHH
T ss_pred cCHHHHHHHHHHHhhHHHHh
Confidence 99999999999999875333
No 208
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.22 E-value=9.4e-06 Score=66.35 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=36.9
Q ss_pred CCcEEEEE-ECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045 269 QEPWLVVL-YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313 (361)
Q Consensus 269 ~~~vlv~F-~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 313 (361)
++.++|.| +++||++|+...|.+.++.+.+.+.++.++.|+.+..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 45555555 5999999999999999999999765799999987654
No 209
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=4.4e-05 Score=67.90 Aligned_cols=162 Identities=11% Similarity=0.062 Sum_probs=99.5
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccC-------C--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHH----H
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDT-------G--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEV----Q 75 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dt-------g--~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~ 75 (361)
++|+|+.|||-||.+. +|+++.+.++.-||+-. | -....-.+.+++++++++++++.+.-...-+ .
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs 85 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFS 85 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcCCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHH
Confidence 6899999999998766 89999999988887532 1 1233456789999999999998875544322 2
Q ss_pred HHHHhcCCCCCCccchhchhhccccHHHHHHHc---cCCEEEEeeeccCCccCccC---CCce-ecCC----C-CcCCcC
Q 018045 76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSPGTRSE---IPVV-QVDP----V-FEGLEG 143 (361)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~---~~~~~i~G~R~~Es~~~R~~---~~~~-~~~~----~-~~~~~~ 143 (361)
.+++.+..-..|. +.--|....|-..+.+.+. +++.++||+=|--+. .-.. ...+ ..+. . |.+...
T Consensus 86 ~~L~~Y~~G~TPN-PDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~-~~~~~~~~~l~~~~d~~KDQt~FL~~in 163 (377)
T KOG2805|consen 86 PFLEEYENGRTPN-PDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVL-EDEDNAESHLLISKDMVKDQTYFLSTIN 163 (377)
T ss_pred HHHHHHhcCCCCC-CCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeec-CcccCcceeEeecccccCCceeEeeccc
Confidence 2233332211222 2235888888885555554 668899998654432 1111 0000 1110 0 000000
Q ss_pred CCCCeEEEeeCccCcHHHHHHHHHhCCCCC
Q 018045 144 GVGSLVKWNPVANVKGNDIWNFLRTMDVPI 173 (361)
Q Consensus 144 ~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~ 173 (361)
..--.-...||-.|+..+|....+..|+|.
T Consensus 164 ~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~ 193 (377)
T KOG2805|consen 164 QTQLKRLLFPLGCLTKSEVKKLAKQAGFPN 193 (377)
T ss_pred HHHHHhhhccCcccCHHHHHHHHHhcCCcc
Confidence 000001368999999999999999999984
No 210
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.21 E-value=3.5e-06 Score=61.74 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=44.7
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch----HHHHHcCCCCCCCeEEEEeCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~----~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
++.|+++||++|+.+.+.++++. .+. .+.++.||.+.+.. .+. +.+++.++|+++ -+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~-~~~g~~~vP~v~--i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLE-EITGQRTVPNIF--INGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHH-HHhCCCCCCeEE--ECCE
Confidence 57899999999999999999986 333 47788888765522 255 667999999984 3554
No 211
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.5e-05 Score=70.97 Aligned_cols=110 Identities=17% Similarity=0.300 Sum_probs=86.7
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECC----CChhHHhhHHHHHHHHHHhcC-----C--CeEEEEEEcCCCchH
Q 018045 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAP----WCQFCQAMEGSYVELADKLAG-----N--GVKVGKFRADGDQKE 316 (361)
Q Consensus 248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~----wC~~C~~~~p~~~~la~~~~~-----~--~v~~~~vd~~~~~~~ 316 (361)
+..|..+++++|..++.....+=.++|+|.|. .|+-|+.+..++.-++..+.. + ++-|..||.++. ++
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-p~ 117 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-PQ 117 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-HH
Confidence 47899999999999998444555788888875 499999999999999999754 2 688999999999 99
Q ss_pred HHHHcCCCCCCCeEEEEeCCCCCe---eecCCC--CCCHHHHHHHHHH
Q 018045 317 YAKQKLQLGSFPTILFFPKHSSKP---IKYPSE--RRDVDSLMAFVDA 359 (361)
Q Consensus 317 l~~~~~~v~~~Pt~~~~~~g~~~~---~~~~~~--~~~~~~l~~~i~~ 359 (361)
+. ++++++++|++++|...+... ..+... ...++++.+|++.
T Consensus 118 ~F-q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~ 164 (331)
T KOG2603|consen 118 VF-QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVAD 164 (331)
T ss_pred HH-HHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHH
Confidence 99 999999999999995443221 111110 1348999999875
No 212
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.18 E-value=1.2e-05 Score=67.36 Aligned_cols=88 Identities=10% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCcEEEEEECCC-ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCC
Q 018045 268 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQL 324 (361)
Q Consensus 268 ~~~~vlv~F~a~w-C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v 324 (361)
.++.++|+||+.| |++|....|.++++++.+. ++.++.|..|.. ...++ +.|++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~-~~~gv 119 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFG-KAYGV 119 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHH-HHhCC
Confidence 4789999999999 9999999999999999984 588888876542 03667 78888
Q ss_pred CCCC---------eEEEEeCCCCCeeecC----CCCCCHHHHHHHHH
Q 018045 325 GSFP---------TILFFPKHSSKPIKYP----SERRDVDSLMAFVD 358 (361)
Q Consensus 325 ~~~P---------t~~~~~~g~~~~~~~~----~~~~~~~~l~~~i~ 358 (361)
...| +.++++..+.....+. ....+.+++.++|+
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 8777 8888864433222221 12335666666654
No 213
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.18 E-value=1.8e-05 Score=69.80 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------chHHHHHcCCCCCCCeEEEEeCCCC
Q 018045 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHSS 338 (361)
Q Consensus 269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------~~~l~~~~~~v~~~Pt~~~~~~g~~ 338 (361)
++.-|++||.+.|+.|+.+.|++..+++.++ +.+..|.+|.. +...+ ++++|..+|++++...+..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVINPLLPDSRTDQGQA-QRLGVKYFPALMLVDPKSG 218 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCCccChhHH-HhcCCcccceEEEEECCCC
Confidence 4588999999999999999999999999984 66666666541 13466 7899999999999976654
Q ss_pred CeeecCCCCCCHHHHHHHHHH
Q 018045 339 KPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~i~~ 359 (361)
......-|..+.++|.+-|-.
T Consensus 219 ~~~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 219 SVRPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred cEEEEeeccCCHHHHHHHHHH
Confidence 444444457899999876653
No 214
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.18 E-value=1.6e-05 Score=57.23 Aligned_cols=74 Identities=16% Similarity=0.398 Sum_probs=54.5
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHH
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 353 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l 353 (361)
|.+++++|+.|..+...++++++.++ +.+-.+|.... ++ . .+|+|.++|++++ +|+ +.+.|...+.++|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~~~~-~~-~-~~ygv~~vPalvI--ng~---~~~~G~~p~~~el 71 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG---IEVEIIDIEDF-EE-I-EKYGVMSVPALVI--NGK---VVFVGRVPSKEEL 71 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT---EEEEEEETTTH-HH-H-HHTT-SSSSEEEE--TTE---EEEESS--HHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC---CeEEEEEccCH-HH-H-HHcCCCCCCEEEE--CCE---EEEEecCCCHHHH
Confidence 34478889999999999999999883 66666677544 44 4 6999999999955 565 5566646788899
Q ss_pred HHHHH
Q 018045 354 MAFVD 358 (361)
Q Consensus 354 ~~~i~ 358 (361)
.++|+
T Consensus 72 ~~~l~ 76 (76)
T PF13192_consen 72 KELLE 76 (76)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 88875
No 215
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.16 E-value=1.3e-05 Score=65.67 Aligned_cols=88 Identities=14% Similarity=0.214 Sum_probs=60.4
Q ss_pred CCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------c--hHHHHHcCCCC
Q 018045 269 QEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------Q--KEYAKQKLQLG 325 (361)
Q Consensus 269 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~--~~l~~~~~~v~ 325 (361)
+++++|.|| ++||+.|....|.++++.+.+++.++.++.|..+.. + ..+. +.|++.
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~g~~ 106 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVA-KAYGVF 106 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHH-HHhCCc
Confidence 378888887 999999999999999999999765788888876542 1 3456 677776
Q ss_pred ----CC--CeEEEEe-CCCCCeeecCCC---CCCHHHHHHHHH
Q 018045 326 ----SF--PTILFFP-KHSSKPIKYPSE---RRDVDSLMAFVD 358 (361)
Q Consensus 326 ----~~--Pt~~~~~-~g~~~~~~~~~~---~~~~~~l~~~i~ 358 (361)
++ |+.++++ +|+. ...+.+. ..+..++..-|+
T Consensus 107 ~~~~~~~~~~~~lid~~G~v-~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGII-RYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred cccCCCccceEEEECCCCEE-EEEEecCCcccccchhHHHHhh
Confidence 33 3778886 4542 3333332 245566655543
No 216
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.16 E-value=7.1e-06 Score=65.36 Aligned_cols=86 Identities=19% Similarity=0.314 Sum_probs=50.8
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcC---CCCCCCeEEEEeCCCCCeeecC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL---QLGSFPTILFFPKHSSKPIKYP 344 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~---~v~~~Pt~~~~~~g~~~~~~~~ 344 (361)
..+..++.|..+|||.|+...|.+.++++..++ +.+--+--|.+ .++. .+| +..++|++++++++.. .+..-
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd~~-~el~-~~~lt~g~~~IP~~I~~d~~~~-~lg~w 114 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRDEN-KELM-DQYLTNGGRSIPTFIFLDKDGK-ELGRW 114 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HHHH-HHHT-TTTTT-SS--SSEEEEE-TT---EEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEecCC-hhHH-HHHHhCCCeecCEEEEEcCCCC-EeEEE
Confidence 456789999999999999999999999998754 77777777777 7766 444 5788999999966532 44443
Q ss_pred CCCCCHHHHHHHHHHh
Q 018045 345 SERRDVDSLMAFVDAL 360 (361)
Q Consensus 345 ~~~~~~~~l~~~i~~~ 360 (361)
| --++.+.+++.++
T Consensus 115 g--erP~~~~~~~~~~ 128 (129)
T PF14595_consen 115 G--ERPKEVQELVDEY 128 (129)
T ss_dssp E--SS-HHHH------
T ss_pred c--CCCHHHhhccccC
Confidence 3 2355666665554
No 217
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.14 E-value=1.8e-05 Score=68.47 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=66.4
Q ss_pred CCcEEE-EEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHHc
Q 018045 269 QEPWLV-VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQK 321 (361)
Q Consensus 269 ~~~vlv-~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~~ 321 (361)
++.++| .|+++||+.|....+.|.++.++++..++.++.|.++.. +..++ +.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia-~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA-RE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH-HH
Confidence 555554 688999999999999999999999865788888876531 14566 67
Q ss_pred CCCC------CCCeEEEEeCCCCCeeec--C-CCCCCHHHHHHHHHHhC
Q 018045 322 LQLG------SFPTILFFPKHSSKPIKY--P-SERRDVDSLMAFVDALR 361 (361)
Q Consensus 322 ~~v~------~~Pt~~~~~~g~~~~~~~--~-~~~~~~~~l~~~i~~~~ 361 (361)
|++. .+|++++++..+...... . ...++.+++...|+.++
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8874 589999996544322111 1 12479999999988764
No 218
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=5.2e-05 Score=58.20 Aligned_cols=99 Identities=12% Similarity=0.225 Sum_probs=79.7
Q ss_pred ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045 257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 336 (361)
Q Consensus 257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g 336 (361)
...++.+. ....+.++|-|.-+|-+.|..|...+.++++...+ -..++-||+++- +++. +-|++...||+++|-++
T Consensus 12 ~~VdqaI~-~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV-~~~~-~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 12 WEVDQAIL-STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEV-PDFV-KMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHHh-cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchh-hhhh-hhhcccCCceEEEEEcC
Confidence 44566554 44688999999999999999999999999999987 677888999988 9999 99999999999999887
Q ss_pred CCCeeecCCC--------CCCHHHHHHHHHH
Q 018045 337 SSKPIKYPSE--------RRDVDSLMAFVDA 359 (361)
Q Consensus 337 ~~~~~~~~~~--------~~~~~~l~~~i~~ 359 (361)
+-..+.+..| ..+.+++++.++.
T Consensus 88 kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 88 KHMKIDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred ceEEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 7444454443 2356777777764
No 219
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.12 E-value=4.8e-05 Score=70.11 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=50.0
Q ss_pred CcEEEEecchHHHHHH-HHHHHc-C-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~-~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
++++|++|||.||+++ .|+.+. + .++..++++++..-++..++++.+++.+|++++++.-.
T Consensus 34 ~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~ 97 (326)
T PRK00876 34 RGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDIT 97 (326)
T ss_pred CCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECc
Confidence 5899999999999877 777764 4 35777888887666888999999999999998876544
No 220
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.12 E-value=3.8e-05 Score=59.57 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=78.7
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHH---hcCCCeEEEEEEcCCCchHHHHHcCCCCC-
Q 018045 251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADK---LAGNGVKVGKFRADGDQKEYAKQKLQLGS- 326 (361)
Q Consensus 251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~---~~~~~v~~~~vd~~~~~~~l~~~~~~v~~- 326 (361)
|.++|.++++.+.. .+.+..+.|+.+ ..-....+.+.++|+. +++ ++.|+.+|.+.. .... +.|++..
T Consensus 1 ~~e~t~e~~~~~~~---~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~-~~~~-~~fgl~~~ 72 (111)
T cd03072 1 VREITFENAEELTE---EGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG-AINFLTADGDKF-RHPL-LHLGKTPA 72 (111)
T ss_pred CcccccccHHHHhc---CCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHh-hhHH-HHcCCCHh
Confidence 46788899988776 666766677732 3346788999999999 988 899999999998 6678 8999987
Q ss_pred -CCeEEEEeCCCCCeee-cCCCCCCHHHHHHHHHHh
Q 018045 327 -FPTILFFPKHSSKPIK-YPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 327 -~Pt~~~~~~g~~~~~~-~~~~~~~~~~l~~~i~~~ 360 (361)
+|.+.+.......... +.+ ..+.++|.+|++++
T Consensus 73 ~~P~i~i~~~~~~~Ky~~~~~-~~t~~~i~~Fv~~~ 107 (111)
T cd03072 73 DLPVIAIDSFRHMYLFPDFED-VYVPGKLKQFVLDL 107 (111)
T ss_pred HCCEEEEEcchhcCcCCCCcc-ccCHHHHHHHHHHH
Confidence 9999999764422233 333 78999999999875
No 221
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.09 E-value=1.2e-05 Score=65.51 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=52.2
Q ss_pred CCCcEEEEEECCC-ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------c-hHHHHHcCCC
Q 018045 268 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------Q-KEYAKQKLQL 324 (361)
Q Consensus 268 ~~~~vlv~F~a~w-C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------~-~~l~~~~~~v 324 (361)
.+++++|+||+.| |++|+...|.++++.++++ ++.|+.|+.+.. . ..++ +.|++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~~~gv 101 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFG-KAYGV 101 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHH-HHhCC
Confidence 4789999999998 6999999999999999985 588888887632 0 3455 56776
Q ss_pred CC------CCeEEEEe-CCC
Q 018045 325 GS------FPTILFFP-KHS 337 (361)
Q Consensus 325 ~~------~Pt~~~~~-~g~ 337 (361)
.. .|+.++++ +|+
T Consensus 102 ~~~~~~~~~~~~~iid~~G~ 121 (143)
T cd03014 102 LIKDLGLLARAVFVIDENGK 121 (143)
T ss_pred eeccCCccceEEEEEcCCCe
Confidence 53 68888886 555
No 222
>PRK15000 peroxidase; Provisional
Probab=98.09 E-value=2.6e-05 Score=67.28 Aligned_cols=92 Identities=13% Similarity=0.254 Sum_probs=69.0
Q ss_pred CCCcEEEEEEC-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHH
Q 018045 268 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAK 319 (361)
Q Consensus 268 ~~~~vlv~F~a-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~ 319 (361)
.++.++|+||+ +||+.|....+.|.+++++++..++.++.|.+|... ..++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia- 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ- 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH-
Confidence 47899999999 599999999999999999998667888888776320 2455
Q ss_pred HcCCCC------CCCeEEEEe-CCCCCeeecCC---CCCCHHHHHHHHHHhC
Q 018045 320 QKLQLG------SFPTILFFP-KHSSKPIKYPS---ERRDVDSLMAFVDALR 361 (361)
Q Consensus 320 ~~~~v~------~~Pt~~~~~-~g~~~~~~~~~---~~~~~~~l~~~i~~~~ 361 (361)
+.|++. .+|+.++++ +|+.. ..+.+ -.++.+++.+.|+.++
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~-~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVR-HQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHhh
Confidence 667876 689999996 45432 22211 2378999999888764
No 223
>PRK05370 argininosuccinate synthase; Validated
Probab=98.06 E-value=4.8e-05 Score=71.83 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=92.0
Q ss_pred HHhHh--CCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHH
Q 018045 4 ALEKF--GNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVR 79 (361)
Q Consensus 4 ~~~~~--~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~~~~ 79 (361)
.+++. +++|+++||||=|+.++ .++++.+.+|..+++|+|..-.+-++.+++-+..+|. ++.++.......++++.
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~ 83 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIA 83 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHH
Confidence 34554 37899999999996544 6666668889999999995213456788888999998 57766544433333321
Q ss_pred hcCCCCCC--------ccchhchhhccccHHHHHHHc--cCCEEEEeee-ccCCccCccCCCceecCCCCcCCcCCCCCe
Q 018045 80 SKGLFSFY--------EDGHQECCRVRKVRPLRRALK--GLRAWITGQR-KDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 148 (361)
Q Consensus 80 ~~~~~~~~--------~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R-~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~ 148 (361)
.-..+..+ .....--....- .-+-+..+ +.+++.-|-. +.-. +-|..+.+...++ .+
T Consensus 84 aI~anA~Y~~~~e~~Y~l~t~LaRplia-~~lv~~A~~~ga~aIAHG~TGKGND-QvRFE~~~~aL~P----------~l 151 (447)
T PRK05370 84 AIQCGAFHISTGGVTYFNTTPLGRAVTG-TMLVAAMKEDGVNIWGDGSTYKGND-IERFYRYGLLTNP----------EL 151 (447)
T ss_pred HHHcCCccccccCccccCCCcchHHHHH-HHHHHHHHHhCCcEEEEcCCCCCCc-hHHHHHHHHHhCC----------CC
Confidence 11111111 000000000111 11111122 5566665543 1111 1354444433343 34
Q ss_pred EEEeeCccC-------cHHHHHHHHHhCCCCCC
Q 018045 149 VKWNPVANV-------KGNDIWNFLRTMDVPIN 174 (361)
Q Consensus 149 ~~~~Pi~~W-------~~~dv~~yi~~~~lp~~ 174 (361)
-.+.|.-+| +.+|--+|+++||||+.
T Consensus 152 ~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~ 184 (447)
T PRK05370 152 KIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYK 184 (447)
T ss_pred eEecchhhhhcccccCCHHHHHHHHHHcCCCCC
Confidence 568999998 78999999999999985
No 224
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.97 E-value=7.7e-05 Score=66.58 Aligned_cols=93 Identities=22% Similarity=0.299 Sum_probs=68.8
Q ss_pred CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045 268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 319 (361)
Q Consensus 268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~ 319 (361)
.++.+++.|| ++||+.|....+.|.++.+++++.++.++.|.+|.. +..++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia- 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS- 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH-
Confidence 3567888888 899999999999999999999765677887776541 14577
Q ss_pred HcCCCC-----CCCeEEEEe-CCCCCeee-c-CCCCCCHHHHHHHHHHhC
Q 018045 320 QKLQLG-----SFPTILFFP-KHSSKPIK-Y-PSERRDVDSLMAFVDALR 361 (361)
Q Consensus 320 ~~~~v~-----~~Pt~~~~~-~g~~~~~~-~-~~~~~~~~~l~~~i~~~~ 361 (361)
+.|++. ..|+.++++ +|+..... + ....++.+++.+.|+.++
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 788885 589999997 55532222 1 122478999999888764
No 225
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.97 E-value=0.00018 Score=56.10 Aligned_cols=99 Identities=13% Similarity=0.250 Sum_probs=74.7
Q ss_pred cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC-eEEEEe
Q 018045 256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP-TILFFP 334 (361)
Q Consensus 256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P-t~~~~~ 334 (361)
....++++. ...++.++|-|..+|-+.|.+|-..+.++++..++ -..++.||+++- +++. +.|.+. -| |++||-
T Consensus 8 ~~~VDqAI~-~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~V-pdfn-~~yel~-dP~tvmFF~ 82 (133)
T PF02966_consen 8 GWHVDQAIL-SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEV-PDFN-QMYELY-DPCTVMFFF 82 (133)
T ss_dssp HHHHHHHHH-H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTT-HCCH-HHTTS--SSEEEEEEE
T ss_pred cchHHHHHh-ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccc-hhhh-cccccC-CCeEEEEEe
Confidence 345666654 45789999999999999999999999999999987 678899999999 9988 899999 77 466665
Q ss_pred CCCCCeeecCCC--------CCCHHHHHHHHHH
Q 018045 335 KHSSKPIKYPSE--------RRDVDSLMAFVDA 359 (361)
Q Consensus 335 ~g~~~~~~~~~~--------~~~~~~l~~~i~~ 359 (361)
+++...+.+..| ..+.++|++.++.
T Consensus 83 rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 83 RNKHMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp TTEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred cCeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 666434444432 2457888887764
No 226
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.94 E-value=6.9e-05 Score=64.88 Aligned_cols=90 Identities=23% Similarity=0.379 Sum_probs=63.7
Q ss_pred cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHHcCCC
Q 018045 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQKLQL 324 (361)
Q Consensus 271 ~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~~~~v 324 (361)
.+|+.|+++||+.|....+.|.+++++++..++.++.|.++.. +..++ +.|++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia-~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVA-KLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHH-HHcCC
Confidence 4566888999999999999999999999866788888887642 13566 77887
Q ss_pred C----C----CCeEEEEe-CCCCCeee-cC-CCCCCHHHHHHHHHHhC
Q 018045 325 G----S----FPTILFFP-KHSSKPIK-YP-SERRDVDSLMAFVDALR 361 (361)
Q Consensus 325 ~----~----~Pt~~~~~-~g~~~~~~-~~-~~~~~~~~l~~~i~~~~ 361 (361)
. + +|+.++++ +|+..... +. ...++.+++.+.|++++
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 5 2 34678885 44422122 11 11367899999888763
No 227
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.94 E-value=4.4e-05 Score=64.65 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=38.7
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 311 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~ 311 (361)
.++++||.|+|+||++|.+ .|.|+++.+.|++.++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 5799999999999999975 889999999998767999999885
No 228
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.93 E-value=0.00028 Score=56.35 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=76.4
Q ss_pred CceecCcccH-HHHHhhcCCCCcEEEEEECC--CChh-H-HhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCC
Q 018045 250 NLVTLNRTGM-ENLARLDHRQEPWLVVLYAP--WCQF-C-QAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL 324 (361)
Q Consensus 250 ~v~~l~~~~f-~~~~~~~~~~~~vlv~F~a~--wC~~-C-~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v 324 (361)
.|++|+++++ ++.-. +++..+|.|.-. -|.. + ..+...+.++|+.++++.+.|+.+|.+.. ..+. +.|++
T Consensus 3 ~~~~l~~~~~~~~~C~---~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~-~~~~-~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETCE---EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ-LDLE-EALNI 77 (130)
T ss_pred ceEEecCHHHHHhhcc---CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc-HHHH-HHcCC
Confidence 5788887665 44333 456666666432 1222 2 45678899999999993399999999999 7888 89999
Q ss_pred C--CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 325 G--SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 325 ~--~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
. ++|+++++...+.+-..+.+ ..+.++|.+|++++
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~-~~t~e~i~~Fv~~~ 114 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKG-SFSEDGINEFLREL 114 (130)
T ss_pred CccCCCEEEEEecccCccccccC-ccCHHHHHHHHHHH
Confidence 5 49999999775531222445 79999999999875
No 229
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.90 E-value=0.00012 Score=74.81 Aligned_cols=145 Identities=14% Similarity=0.046 Sum_probs=89.0
Q ss_pred CcEEEEecchHHHHHH-HHHHHc----C---CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT----G---RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK 81 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~----~---~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~ 81 (361)
++++|+.|||+||+++ .++.+. + .++..+++-+-...+++.+.++++++.+|+++.++.-+. .+.......
T Consensus 362 ~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~~-~~~~~~~~l 440 (679)
T PRK02628 362 KKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIRP-AALQMLKDI 440 (679)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcHH-HHHHHHHHh
Confidence 7899999999999865 555543 3 457778884334567999999999999999998774332 122222221
Q ss_pred CCC-C--CC--ccchhchhhccccHHHHHHHcc--CCEEEEeeeccCCccCccCCCcee-cCCCCcCCcCCCCCeEEEee
Q 018045 82 GLF-S--FY--EDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQ-VDPVFEGLEGGVGSLVKWNP 153 (361)
Q Consensus 82 ~~~-~--~~--~~~~~~cc~~~K~~pl~~~~~~--~~~~i~G~R~~Es~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~P 153 (361)
+.+ . .. +.....-|...++.-|...... ..++.|| +++|.. -..-... .| +.--+.|
T Consensus 441 ~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~---~Gy~T~~~GD-----------~~~~~~~ 505 (679)
T PRK02628 441 GHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELA---LGWCTYGVGD-----------HMSHYNV 505 (679)
T ss_pred ccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHH---hCceecCCCC-----------ccccccc
Confidence 111 0 00 0011223777777777666653 3456677 445542 1111111 11 2235899
Q ss_pred CccCcHHHHHHHHHhCC
Q 018045 154 VANVKGNDIWNFLRTMD 170 (361)
Q Consensus 154 i~~W~~~dv~~yi~~~~ 170 (361)
|.+....+|+..++..+
T Consensus 506 ~~~l~Kt~v~~l~~~~~ 522 (679)
T PRK02628 506 NASVPKTLIQHLIRWVI 522 (679)
T ss_pred ccCCcHHHHHHHHHHHH
Confidence 99999999999888664
No 230
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.88 E-value=4.5e-05 Score=56.17 Aligned_cols=75 Identities=12% Similarity=0.310 Sum_probs=54.3
Q ss_pred EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcC--CCCCCCeEEEEeCCCCCeeecCCC
Q 018045 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKL--QLGSFPTILFFPKHSSKPIKYPSE 346 (361)
Q Consensus 272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~--~v~~~Pt~~~~~~g~~~~~~~~~~ 346 (361)
-++.|+.+||++|+.....|+++...+. ++.+..+|++.+. .++. ... ++.++|++++ +|+ . .||
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~~~~~~~el~-~~~~~~~~~vP~ifi--~g~--~---igg 71 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHAEGISKADLE-KTVGKPVETVPQIFV--DQK--H---IGG 71 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECCCChHHHHHHH-HHHCCCCCcCCEEEE--CCE--E---EcC
Confidence 4789999999999999999999998764 4889999998651 2444 333 3588999753 565 2 232
Q ss_pred CCCHHHHHHHHHH
Q 018045 347 RRDVDSLMAFVDA 359 (361)
Q Consensus 347 ~~~~~~l~~~i~~ 359 (361)
.++|.++++.
T Consensus 72 ---~~~~~~~~~~ 81 (85)
T PRK11200 72 ---CTDFEAYVKE 81 (85)
T ss_pred ---HHHHHHHHHH
Confidence 4677776653
No 231
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.88 E-value=8.1e-05 Score=60.10 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=38.9
Q ss_pred CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 018045 268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG 312 (361)
Q Consensus 268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~ 312 (361)
.+++++|.|| +.||+.|....|.+.++.++++..++.|+.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5789999999 78999999999999999999865578888887754
No 232
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.87 E-value=0.00019 Score=54.11 Aligned_cols=88 Identities=19% Similarity=0.352 Sum_probs=68.5
Q ss_pred cHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCC
Q 018045 258 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 258 ~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
.+++++. .++.++|-|+.++++ .+...|.++|+.+.+ .+.|+.+. + .++. +++.+. .|++++|++..
T Consensus 9 ~l~~~~~---~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~-~~~~-~~~~~~-~~~i~l~~~~~ 75 (97)
T cd02981 9 ELEKFLD---KDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---D-KEVA-KKLKVK-PGSVVLFKPFE 75 (97)
T ss_pred HHHHHhc---cCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---h-HHHH-HHcCCC-CCceEEeCCcc
Confidence 3455554 889999999999987 577899999999986 68887765 3 5777 677765 59999997754
Q ss_pred CCeeecCCCCCCHHHHHHHHHH
Q 018045 338 SKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
.....|.| ..+.++|.+||..
T Consensus 76 ~~~~~y~g-~~~~~~l~~fi~~ 96 (97)
T cd02981 76 EEPVEYDG-EFTEESLVEFIKD 96 (97)
T ss_pred cCCccCCC-CCCHHHHHHHHHh
Confidence 44677887 5779999999974
No 233
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.85 E-value=8.3e-05 Score=52.46 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=47.0
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHc----CCCCCCCeEEEEeCCCCCeeecCCCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK----LQLGSFPTILFFPKHSSKPIKYPSERR 348 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~----~~v~~~Pt~~~~~~g~~~~~~~~~~~~ 348 (361)
++.|+++||++|+.+...+.+. ++.+..+|++.+ .... +. .++.++|++++ +|+ ...| .
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------~i~~~~~~i~~~-~~~~-~~~~~~~~~~~vP~i~~--~~~----~i~g--~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------GIPFEEVDVDED-PEAL-EELKKLNGYRSVPVVVI--GDE----HLSG--F 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------CCCeEEEeCCCC-HHHH-HHHHHHcCCcccCEEEE--CCE----EEec--C
Confidence 6789999999999998887762 477778888876 4433 33 36789999976 332 2233 4
Q ss_pred CHHHHHHHH
Q 018045 349 DVDSLMAFV 357 (361)
Q Consensus 349 ~~~~l~~~i 357 (361)
+.+.|.++|
T Consensus 65 ~~~~l~~~~ 73 (73)
T cd02976 65 RPDKLRALL 73 (73)
T ss_pred CHHHHHhhC
Confidence 566666653
No 234
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.84 E-value=0.00022 Score=55.23 Aligned_cols=100 Identities=9% Similarity=0.096 Sum_probs=72.0
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEE---ECCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCchHHHHHcCCCCC-
Q 018045 252 VTLNRTGMENLARLDHRQEPWLVVL---YAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGS- 326 (361)
Q Consensus 252 ~~l~~~~f~~~~~~~~~~~~vlv~F---~a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~~~l~~~~~~v~~- 326 (361)
.++|.+|..... ..+.+++++ |+..-..-......+.++|+.++ + .+.|+.+|.+.. .... +.|++..
T Consensus 2 ~~~~~en~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~-~~~l-~~fgl~~~ 74 (111)
T cd03073 2 GHRTKDNRAQFT----KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDF-SHEL-EEFGLDFS 74 (111)
T ss_pred CeeccchHHHhc----cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHH-HHHH-HHcCCCcc
Confidence 456777777764 233334432 22233455678899999999999 7 799999999988 6678 8999984
Q ss_pred ---CCeEEEEeCCCCCeeecCCCCC-CHHHHHHHHHHh
Q 018045 327 ---FPTILFFPKHSSKPIKYPSERR-DVDSLMAFVDAL 360 (361)
Q Consensus 327 ---~Pt~~~~~~g~~~~~~~~~~~~-~~~~l~~~i~~~ 360 (361)
+|++.++..... -....+ .. +.++|.+|++++
T Consensus 75 ~~~~P~~~i~~~~~~-KY~~~~-~~~t~e~i~~F~~~f 110 (111)
T cd03073 75 GGEKPVVAIRTAKGK-KYVMEE-EFSDVDALEEFLEDF 110 (111)
T ss_pred cCCCCEEEEEeCCCC-ccCCCc-ccCCHHHHHHHHHHh
Confidence 999999974331 222344 57 999999999875
No 235
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.82 E-value=7.8e-05 Score=60.40 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=39.4
Q ss_pred CCCcEEEEEECCCChh-HHhhHHHHHHHHHHhcCC---CeEEEEEEcCC
Q 018045 268 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAGN---GVKVGKFRADG 312 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~~~~~---~v~~~~vd~~~ 312 (361)
.+++++|.||++||++ |....+.+.++.+.++.. ++.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5789999999999998 999999999999999763 48998888753
No 236
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.9e-05 Score=67.21 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=62.9
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSS 338 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~ 338 (361)
..+..++.|||+||.+|.+|...++.+++..+ ++.|++++.+.. ++++ ..+.+..+|+++++..|+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~-~eis-~~~~v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEF-PEIS-NLIAVEAVPYFVFFFLGEK 82 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhh-hHHH-HHHHHhcCceeeeeecchh
Confidence 78999999999999999999999999999994 599999999999 9999 9999999999999987774
No 237
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.82 E-value=0.00013 Score=63.62 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=67.6
Q ss_pred CCc-EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHHc
Q 018045 269 QEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQK 321 (361)
Q Consensus 269 ~~~-vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~~ 321 (361)
++. +|+.|+++||+.|....+.|.+++++++..++.++.|.+|.. +..++ +.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va-~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS-NQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH-HH
Confidence 454 567889999999999999999999999765788888887652 03466 67
Q ss_pred CCCC-------CCCeEEEEeC-CCCCeee-cC-CCCCCHHHHHHHHHHhC
Q 018045 322 LQLG-------SFPTILFFPK-HSSKPIK-YP-SERRDVDSLMAFVDALR 361 (361)
Q Consensus 322 ~~v~-------~~Pt~~~~~~-g~~~~~~-~~-~~~~~~~~l~~~i~~~~ 361 (361)
|++. .+|+++++.. |+..... |. ...++.+++.+.|++++
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq 156 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ 156 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 8773 5799999964 5433222 22 12368999999998764
No 238
>PRK13189 peroxiredoxin; Provisional
Probab=97.81 E-value=0.00014 Score=63.80 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=65.6
Q ss_pred CCC-cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHH
Q 018045 268 RQE-PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQ 320 (361)
Q Consensus 268 ~~~-~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~ 320 (361)
.++ .+|+.|+++||+.|....+.|.+++++++..++.++.|.+|.. +..++ +
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia-~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA-K 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH-H
Confidence 355 4455778999999999999999999999765788888876532 13566 6
Q ss_pred cCCCC-------CCCeEEEEe-CCCCCeeecC--CCCCCHHHHHHHHHHhC
Q 018045 321 KLQLG-------SFPTILFFP-KHSSKPIKYP--SERRDVDSLMAFVDALR 361 (361)
Q Consensus 321 ~~~v~-------~~Pt~~~~~-~g~~~~~~~~--~~~~~~~~l~~~i~~~~ 361 (361)
.|++. .+|++++++ +|+.....+. ...++.+++...|+.++
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 77764 468899996 4543222221 12468899998887653
No 239
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=97.80 E-value=7.6e-05 Score=67.52 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=67.0
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH----hcCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR----SKGL 83 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~----~~~~ 83 (361)
.+|.+.+|||.||+++ .++.+... ++..+.++.+..-.+-.++++.+++++|++.+++..+...+..... ....
T Consensus 16 ~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (269)
T cd01991 16 VPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEFTPADLLAALPDVIWELDE 95 (269)
T ss_pred CceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEcCHHHHHHHHHHHHHHhCC
Confidence 6899999999999877 77776544 3667777766433334789999999999998888766543333221 1111
Q ss_pred CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCC
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQS 122 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es 122 (361)
+ ...|.. .-...+.+..+ +.+++++|.-+||-
T Consensus 96 p------~~~~~~-~~~~~l~~~a~~~~~~v~l~G~g~Del 129 (269)
T cd01991 96 P------FADSSA-IPLYLLSRLARKHGIKVVLSGEGADEL 129 (269)
T ss_pred C------CCCcHH-HHHHHHHHHHHHhCCEEEEecCCcccc
Confidence 1 111222 22222333333 34799999999995
No 240
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.75 E-value=3.8e-05 Score=71.93 Aligned_cols=149 Identities=15% Similarity=0.237 Sum_probs=77.9
Q ss_pred EEEecchHHHHHH-HHHHHcC-CCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHH----Hhc----
Q 018045 13 AIAFSGAEDVALI-EYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALV----RSK---- 81 (361)
Q Consensus 13 ~vs~SGGKDS~~l-~l~~~~~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~~~----~~~---- 81 (361)
+++||||=||+++ .++++.+ .+|..+++|+|.. .+-.+.+++-+.++|. +++++.......++++ ...
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~-~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Ye 79 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQP-DEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYE 79 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST--S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BT
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCc-HHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhC
Confidence 6899999997655 6666655 8899999999983 3677888899999998 8887755443332221 111
Q ss_pred CCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC--
Q 018045 82 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV-- 157 (361)
Q Consensus 82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W-- 157 (361)
|...+...-.|.+- ..+.. +..+ +.++++-|-..-.....|....+...++ .+-.+.|.-+|
T Consensus 80 g~YpL~tsl~RplI-a~~~v---~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al~P----------~l~viaP~Rd~~~ 145 (388)
T PF00764_consen 80 GRYPLSTSLARPLI-AKKLV---EVAREEGADAVAHGCTGKGNDQVRFELSIRALAP----------ELKVIAPWRDWEF 145 (388)
T ss_dssp TTB--CCCCHHHHH-HHHHH---HHHHHHT-SEEE----TTSSHHHHHHHHHHHHST----------TSEEE-GGGHHHH
T ss_pred CCccccccchHHHH-HHHHH---HHHHHcCCeEEeccCCcCCCchhHHHHHHHHhCc----------CCcEecccchhhh
Confidence 11111111111111 11111 1112 5567765553322212454444444443 34578999987
Q ss_pred cHHHHHHHHHhCCCCCCcc
Q 018045 158 KGNDIWNFLRTMDVPINSL 176 (361)
Q Consensus 158 ~~~dv~~yi~~~~lp~~~l 176 (361)
+.+|..+|++++|||+..-
T Consensus 146 ~R~~~i~ya~~~gIpv~~~ 164 (388)
T PF00764_consen 146 SREEEIEYAKKHGIPVPVT 164 (388)
T ss_dssp HHHHHHHHHHHTT----SS
T ss_pred hHHHHHHHHHHcCCCCCCC
Confidence 7899999999999998654
No 241
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.74 E-value=0.00023 Score=62.08 Aligned_cols=93 Identities=13% Similarity=0.245 Sum_probs=65.8
Q ss_pred CCCcEE-EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------------hHHHHH
Q 018045 268 RQEPWL-VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------------KEYAKQ 320 (361)
Q Consensus 268 ~~~~vl-v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------------~~l~~~ 320 (361)
.++.++ +.|+++||+.|....+.|.+++++++..++.++.|.+|... ..++ +
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia-~ 110 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA-K 110 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH-H
Confidence 355555 47789999999999999999999997667888888876431 3455 5
Q ss_pred cCCCC-------CCCeEEEEeC-CCCCeee-cC-CCCCCHHHHHHHHHHhC
Q 018045 321 KLQLG-------SFPTILFFPK-HSSKPIK-YP-SERRDVDSLMAFVDALR 361 (361)
Q Consensus 321 ~~~v~-------~~Pt~~~~~~-g~~~~~~-~~-~~~~~~~~l~~~i~~~~ 361 (361)
.|++. ..|++++++. |+...+. +. .-.++.+++...|+.++
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 67763 3688889964 4432221 11 12378999999988764
No 242
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00023 Score=62.53 Aligned_cols=171 Identities=19% Similarity=0.259 Sum_probs=98.6
Q ss_pred HhHhC-CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045 5 LEKFG-NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 80 (361)
Q Consensus 5 ~~~~~-~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~ 80 (361)
-++-+ ++++++.|||-||+++ -|+.+ .+.....+|+|+|.. --|..+..+-+.+.+|++++.+......+..+
T Consensus 16 r~~vg~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl~~VdA~~~Fl~~L--- 92 (315)
T COG0519 16 REQVGDGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNLIVVDAKDRFLSAL--- 92 (315)
T ss_pred HHHhCCceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCcccCCcHHHHHHHHHhhcCCceEEEchHHHHHHHh---
Confidence 34445 6899999999999877 56666 688899999999954 34555556667777999999886544332222
Q ss_pred cCCCCCCccchhchhhccccHHHHHHHccC--CEEEEeeeccCCc--cCccCCCceecCCCCcCCcCCCCC---eEEEee
Q 018045 81 KGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSP--GTRSEIPVVQVDPVFEGLEGGVGS---LVKWNP 153 (361)
Q Consensus 81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~--~~R~~~~~~~~~~~~~~~~~~~~~---~~~~~P 153 (361)
.|..- |. ..+.--...-++.+.+..+.. +..+-|+=.-|-. +......+-+-.+ .++.+. +--+-|
T Consensus 93 ~GvtD-PE-~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~~g~~~~IKSHHN-----VGGLP~~m~lkLvEP 165 (315)
T COG0519 93 KGVTD-PE-EKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESGTGKAGTIKSHHN-----VGGLPEDMKLKLVEP 165 (315)
T ss_pred cCCCC-HH-HHHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeecCCCCCccccccc-----cCCCccccceeeeHH
Confidence 22211 00 011111111123333333322 2334444333211 1011111101000 011111 234789
Q ss_pred CccCcHHHHHHHHHhCCCCCCccccCCCCCCC
Q 018045 154 VANVKGNDIWNFLRTMDVPINSLHSQGYISIG 185 (361)
Q Consensus 154 i~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~G 185 (361)
|-+.-.++|...-++.|||-.-+|.+-|+-.|
T Consensus 166 Lr~LfKDEVR~lg~~LGlp~~iv~RhPFPGPG 197 (315)
T COG0519 166 LRELFKDEVRELGRELGLPEEIVYRHPFPGPG 197 (315)
T ss_pred HHHHhHHHHHHHHHHhCCCHHHhccCCCCCCC
Confidence 99999999999999999999999998887665
No 243
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=97.72 E-value=0.00016 Score=62.98 Aligned_cols=126 Identities=14% Similarity=0.181 Sum_probs=76.7
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceE-EEc--cCC-C--CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRV-FSL--DTG-R--LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 83 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v-~~~--dtg-~--~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~ 83 (361)
+++++|||||||++. +.+.+. .++.. +.+ .+. . ...-..+.++..++.+|+++..+.....
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~----------- 69 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT----------- 69 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC-----------
Confidence 578899999999866 666665 55433 222 221 1 1122347889999999999865422111
Q ss_pred CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 161 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d 161 (361)
..-..+.+.++++ +.+.+++|--..+. +|......-.. -++..+.||..-..++
T Consensus 70 ------------~e~~~e~l~~~l~~~gv~~vv~GdI~s~~--qr~~~e~v~~~----------lgl~~~~PLW~~~~~~ 125 (223)
T TIGR00290 70 ------------EEDEVEELKGILHTLDVEAVVFGAIYSEY--QKTRIERVCRE----------LGLKSFAPLWHRDPEK 125 (223)
T ss_pred ------------ccHHHHHHHHHHHHcCCCEEEECCcccHH--HHHHHHHHHHh----------cCCEEeccccCCCHHH
Confidence 1123344555554 56788999888876 34332221111 1567899999988888
Q ss_pred HHHHHHhCCCC
Q 018045 162 IWNFLRTMDVP 172 (361)
Q Consensus 162 v~~yi~~~~lp 172 (361)
+..=+...|+.
T Consensus 126 ll~e~i~~G~~ 136 (223)
T TIGR00290 126 LMEEFVEEKFE 136 (223)
T ss_pred HHHHHHHcCCe
Confidence 77666666653
No 244
>PRK13981 NAD synthetase; Provisional
Probab=97.72 E-value=0.0004 Score=69.37 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=52.8
Q ss_pred HHHhHhC-CcEEEEecchHHHHHH-HHHHHc-CC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 018045 3 RALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 68 (361)
Q Consensus 3 ~~~~~~~-~~i~vs~SGGKDS~~l-~l~~~~-~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~ 68 (361)
..++..+ ++++|++|||-||+++ .|+.+. ++ ++..+++.+....+++++-++.+++.+|++++++.
T Consensus 273 ~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~ 342 (540)
T PRK13981 273 DYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIP 342 (540)
T ss_pred HHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 3344444 6899999999999877 777664 54 58888998887788899999999999999987763
No 245
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.66 E-value=0.00038 Score=58.06 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=84.6
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
+.|..++..+|.+-+...+.+-.|+|..|...-+.|.-+...++.++..|.. ++|+++=.+.. . -.|-=...|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~c----I-pNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTC----I-PNYPESNLP 163 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccc----c-CCCcccCCC
Confidence 5689999999988877777888999999999999999999999999999987 99998865544 2 356667899
Q ss_pred eEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHH
Q 018045 329 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 329 t~~~~~~g~~~-----~~~~~~~~~~~~~l~~~i~~ 359 (361)
|+++|..|..+ +..+.|...+.+++..++-+
T Consensus 164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 99999988642 34555556788898888754
No 246
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.65 E-value=0.00031 Score=69.75 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=73.5
Q ss_pred ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045 251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330 (361)
Q Consensus 251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~ 330 (361)
-..|+++..+.+.+ . .+..-+-.|+++.|++|......+++++...+ +|.+-.||...+ ++++ ++|+|.++|++
T Consensus 100 ~~~l~~~~~~~i~~-~-~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~-~~~~-~~~~v~~VP~~ 173 (517)
T PRK15317 100 PPKLDQEVIEQIKA-L-DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALF-QDEV-EARNIMAVPTV 173 (517)
T ss_pred CCCCCHHHHHHHHh-c-CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhC-HhHH-HhcCCcccCEE
Confidence 34465555554443 1 23445889999999999999999999998755 599999999999 9999 99999999999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 331 LFFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
++ +|+ ..+.| ..+.++|.+.+.+
T Consensus 174 ~i--~~~---~~~~g-~~~~~~~~~~~~~ 196 (517)
T PRK15317 174 FL--NGE---EFGQG-RMTLEEILAKLDT 196 (517)
T ss_pred EE--CCc---EEEec-CCCHHHHHHHHhc
Confidence 76 554 33445 5777777777653
No 247
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=97.62 E-value=1.7e-05 Score=71.03 Aligned_cols=159 Identities=16% Similarity=0.249 Sum_probs=103.8
Q ss_pred CCcEEEEecchHHHHHH-HHHHH----c--CCCceEEEccCCC--CcHHHHHHHHHHHHHhCCcEEEEcCChH----HHH
Q 018045 9 GNDIAIAFSGAEDVALI-EYAHL----T--GRPFRVFSLDTGR--LNPETYRFFDEVEKHFGIRIEYMFPDAV----EVQ 75 (361)
Q Consensus 9 ~~~i~vs~SGGKDS~~l-~l~~~----~--~~~i~v~~~dtg~--~~pet~~~v~~~~~~~g~~i~~~~p~~~----~~~ 75 (361)
|++|.++-|||||||++ +.... + +....++-+|.|. .-...+..+.+...+||+++.++++... ...
T Consensus 51 ge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~tmd 130 (347)
T KOG2840|consen 51 GERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEWTMD 130 (347)
T ss_pred CCccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccchHH
Confidence 36799999999999988 43333 2 3445678889884 3456777889999999999999877532 123
Q ss_pred HHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCC----cC---CCC
Q 018045 76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGL----EG---GVG 146 (361)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~----~~---~~~ 146 (361)
+.+...|.. ..+..-.|.+++.+.+.+... +..-..||+.+||-. .+-.+.++..+.....+ +. ..+
T Consensus 131 ~i~~~i~~~---~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~a-etvl~n~lrgds~rl~R~~~~~t~~~e~~ 206 (347)
T KOG2840|consen 131 EIVSEIGQE---IRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWA-ETVLMNLLRGDSARLERLTEITTPSLEMG 206 (347)
T ss_pred HHHHHHhhh---hhcCceeecHHHHHHHHhhccccchhhhhhcccchHHH-HHHHHHHHHhHHHHhhhccccccCccccC
Confidence 333333321 123334477888877777665 344678999999984 66555555433221111 10 112
Q ss_pred CeEEEeeCccCcHHHHHHHHHhCCC
Q 018045 147 SLVKWNPVANVKGNDIWNFLRTMDV 171 (361)
Q Consensus 147 ~~~~~~Pi~~W~~~dv~~yi~~~~l 171 (361)
.+.+.+||-+=++.+|-.|.....+
T Consensus 207 ~~~r~kplk~~~~keivLya~~~~L 231 (347)
T KOG2840|consen 207 IIPRLKPLKYASEKEIVLYASLSKL 231 (347)
T ss_pred ccccccccccchhhehhhHHHHHHH
Confidence 3678999999999999888766644
No 248
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.61 E-value=0.00044 Score=61.03 Aligned_cols=81 Identities=14% Similarity=0.325 Sum_probs=60.0
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE--------------------------------------
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR-------------------------------------- 309 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd-------------------------------------- 309 (361)
+.+.+++.|.-+.||+|+++.+.+.++.+. ++.+..+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 567889999999999999999998877531 23332221
Q ss_pred ------cCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 310 ------ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 310 ------~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
++++ ..++ ++++|+++|+++ +.+|+ .+ .| ..+.++|.++|++.
T Consensus 182 ~~c~~~v~~~-~~la-~~lgi~gTPtiv-~~~G~--~~--~G-~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADH-YALG-VQFGVQGTPAIV-LSNGT--LV--PG-YQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHh-HHHH-HHcCCccccEEE-EcCCe--Ee--eC-CCCHHHHHHHHHHc
Confidence 1122 5678 899999999999 66776 22 44 78999999999875
No 249
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.61 E-value=0.00034 Score=70.05 Aligned_cols=95 Identities=12% Similarity=0.223 Sum_probs=73.4
Q ss_pred CceecCcccHHHHHhhcCCCCcE-EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 250 NLVTLNRTGMENLARLDHRQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 250 ~v~~l~~~~f~~~~~~~~~~~~v-lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
.-..|+.+..+.+.. =++++ +-.|.+++|+.|......+++++.... ++..-.||.... ++++ ++|+|.++|
T Consensus 459 ~~~~l~~~~~~~i~~---~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~-~~~~-~~~~v~~vP 531 (555)
T TIGR03143 459 PGQPLGEELLEKIKK---ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHF-PDLK-DEYGIMSVP 531 (555)
T ss_pred CCCCCCHHHHHHHHh---cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECccc-HHHH-HhCCceecC
Confidence 444565555554443 35665 556689999999999999999998875 499999999999 9999 999999999
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 329 TILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
++++ +|+ ..+.| ..+.+++.++|
T Consensus 532 ~~~i--~~~---~~~~G-~~~~~~~~~~~ 554 (555)
T TIGR03143 532 AIVV--DDQ---QVYFG-KKTIEEMLELI 554 (555)
T ss_pred EEEE--CCE---EEEee-CCCHHHHHHhh
Confidence 9887 454 33456 56889888876
No 250
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.58 E-value=0.00055 Score=59.07 Aligned_cols=92 Identities=10% Similarity=0.185 Sum_probs=66.2
Q ss_pred CCCcEEEEEEC-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHH
Q 018045 268 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAK 319 (361)
Q Consensus 268 ~~~~vlv~F~a-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~ 319 (361)
.++.++|.||+ +||+.|....+.+.++++++...++.++.|+++... .+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia- 113 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA- 113 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH-
Confidence 46788999995 889999999999999999998767888888876431 3466
Q ss_pred HcCCCC------CCCeEEEEeCCCCCeeec-C--CCCCCHHHHHHHHHHh
Q 018045 320 QKLQLG------SFPTILFFPKHSSKPIKY-P--SERRDVDSLMAFVDAL 360 (361)
Q Consensus 320 ~~~~v~------~~Pt~~~~~~g~~~~~~~-~--~~~~~~~~l~~~i~~~ 360 (361)
+.|++. .+|+.+++++.+...... . ...++.+++.+.|+.+
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 678875 368999996544321111 1 1236788888887765
No 251
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.002 Score=59.52 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=85.6
Q ss_pred CcEEEEecchHH-HHHHHHHHH-cCCCceEEEccCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHHHHHH----HhcC
Q 018045 10 NDIAIAFSGAED-VALIEYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQALV----RSKG 82 (361)
Q Consensus 10 ~~i~vs~SGGKD-S~~l~l~~~-~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~-i~~~~p~~~~~~~~~----~~~~ 82 (361)
.+|++|||||=| |+++.++.+ .+.++..+++|.|.. .+-++.+++-+..+|.. ..++........+++ ....
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~-eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ana 83 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKANA 83 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCC-hHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHHhhc
Confidence 589999999999 556665555 558888999999975 68899999999999986 555533332222222 1111
Q ss_pred CCCCCccchhchhhccccHHHH-----HHHc--cCCEEEEee---eccCCccCccCCCceecCCCCcCCcCCCCCeEEEe
Q 018045 83 LFSFYEDGHQECCRVRKVRPLR-----RALK--GLRAWITGQ---RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN 152 (361)
Q Consensus 83 ~~~~~~~~~~~cc~~~K~~pl~-----~~~~--~~~~~i~G~---R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (361)
+ +.....--+.+ -+|+- .+.+ +.+++.-|- =-|| -|....+...+ +.+-.+.
T Consensus 84 ~---Yeg~YpL~Tal--aRPLIak~lVe~A~k~ga~avaHGcTGKGNDQ---vRFe~~~~al~----------p~lkiiA 145 (403)
T COG0137 84 L---YEGVYPLGTAL--ARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQ---VRFELAILALN----------PDLKIIA 145 (403)
T ss_pred e---eeccccccchh--hHHHHHHHHHHHHHHcCCCEEEecCCCCCCce---eeeeeehhhhC----------CCcEEEe
Confidence 1 11000000000 01211 1111 445666443 2222 23333333223 2445677
Q ss_pred eCccC--cHHHHHHHHHhCCCCCCcc
Q 018045 153 PVANV--KGNDIWNFLRTMDVPINSL 176 (361)
Q Consensus 153 Pi~~W--~~~dv~~yi~~~~lp~~~l 176 (361)
|.-+| +.++.-+|..++|||+.--
T Consensus 146 P~Rew~~~R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 146 PWREWNLTREEEIEYAEEHGIPVKAT 171 (403)
T ss_pred ehhhhccChHHHHHHHHHcCCCcccc
Confidence 77654 8899999999999999544
No 252
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.56 E-value=0.00076 Score=49.89 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=73.1
Q ss_pred cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC-chHHHHHcCCCC----CCC-e
Q 018045 256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLG----SFP-T 329 (361)
Q Consensus 256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-~~~l~~~~~~v~----~~P-t 329 (361)
..+|..++. ....|+|.|..+--..-. ....+.++|+..+| .-+++.|||... ...|| ++++|. --| .
T Consensus 9 ~KdfKKLLR---Tr~NVLvLy~ks~k~a~~-~Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLC-KKlKv~~~~kp~~~~ 82 (112)
T cd03067 9 HKDFKKLLR---TRNNVLVLYSKSAKSAEA-LLKLLSDVAQAVKG-QGTIAWIDCGDSESRKLC-KKLKVDPSSKPKPVE 82 (112)
T ss_pred hHHHHHHHh---hcCcEEEEEecchhhHHH-HHHHHHHHHHHhcC-ceeEEEEecCChHHHHHH-HHHccCCCCCCCcch
Confidence 367888876 788899998887544333 34588999999998 678899999873 27899 999998 445 4
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
+.-|++|.- ...|+- ..+..+|+.|++.
T Consensus 83 LkHYKdG~f-HkdYdR-~~t~kSmv~FlrD 110 (112)
T cd03067 83 LKHYKDGDF-HTEYNR-QLTFKSMVAFLRD 110 (112)
T ss_pred hhcccCCCc-cccccc-hhhHHHHHHHhhC
Confidence 566788874 556665 7899999999864
No 253
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.55 E-value=0.00025 Score=59.71 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=81.8
Q ss_pred Cceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 250 NLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 250 ~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
-|.++ +.+.|-+.+...-+.-.++|..|-+.-+-|..+...+.-||..|+- ++|.+|-...- ... .+|....+|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~--vKFckikss~~--gas-~~F~~n~lP 213 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI--VKFCKIKSSNT--GAS-DRFSLNVLP 213 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc--eeEEEeeeccc--cch-hhhcccCCc
Confidence 57888 4577888776333445789999999999999999999999999975 99999876644 445 899999999
Q ss_pred eEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHH
Q 018045 329 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 329 t~~~~~~g~~~-----~~~~~~~~~~~~~l~~~i~~ 359 (361)
++++|++|..+ +..-.|....+.+|..||+.
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 99999999842 11222345677888888875
No 254
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.54 E-value=0.00037 Score=47.42 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=40.5
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEE
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~ 332 (361)
++.|..++|++|+..+..|++. ++.+-.+|++.+. .++. +..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-------~i~y~~~dv~~~~~~~~~l~-~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-------GIPYEEVDVDEDEEAREELK-ELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-------TBEEEEEEGGGSHHHHHHHH-HHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-------CCeeeEcccccchhHHHHHH-HHcCCCccCEEEE
Confidence 5789999999999999888432 5889999998871 2333 3348999999886
No 255
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.51 E-value=0.00025 Score=52.31 Aligned_cols=74 Identities=14% Similarity=0.269 Sum_probs=52.1
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCC--CCCCCeEEEEeCCCCCeeecCCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQ--LGSFPTILFFPKHSSKPIKYPSER 347 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~--v~~~Pt~~~~~~g~~~~~~~~~~~ 347 (361)
++.|+.+||++|.+++..|+++...+. ++.+..+|++.+. .++. ...+ +.++|++++ +|+ . .||
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~~~~~~~~~l~-~~~g~~~~tVP~ifi--~g~--~---igG- 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIHAEGISKADLE-KTVGKPVETVPQIFV--DEK--H---VGG- 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECCCCHHHHHHHH-HHhCCCCCCcCeEEE--CCE--E---ecC-
Confidence 678999999999999999998876554 3778888887541 2455 4555 378999843 454 1 343
Q ss_pred CCHHHHHHHHHH
Q 018045 348 RDVDSLMAFVDA 359 (361)
Q Consensus 348 ~~~~~l~~~i~~ 359 (361)
.++|.+++++
T Consensus 71 --~~dl~~~~~~ 80 (86)
T TIGR02183 71 --CTDFEQLVKE 80 (86)
T ss_pred --HHHHHHHHHh
Confidence 4777777654
No 256
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.48 E-value=0.00027 Score=51.49 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=58.5
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 352 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~ 352 (361)
+++|..+.|+-|..+...+..+.... .+.+-.||++.+ +++. .+|+. .+|.+.+=..++........+..+.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d-~~l~-~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDED-PELF-EKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ 75 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTT-HHHH-HHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCC-HHHH-HHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence 78899999999999999999876554 589999999998 8899 89996 799966654211111111223689999
Q ss_pred HHHHHH
Q 018045 353 LMAFVD 358 (361)
Q Consensus 353 l~~~i~ 358 (361)
|.+||+
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999985
No 257
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=97.45 E-value=0.001 Score=62.25 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=92.8
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEc-cCCCCcHHHHHHHHHHH-HHh---CCcEEEEcCChHHHHHHHHhcCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSL-DTGRLNPETYRFFDEVE-KHF---GIRIEYMFPDAVEVQALVRSKGL 83 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~-dtg~~~pet~~~v~~~~-~~~---g~~i~~~~p~~~~~~~~~~~~~~ 83 (361)
+++++..|||-||-|. .|+.+.|.++..+|. ..++.-+++.+-+..++ .++ +.++..+.-+.......+....
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~mkRG~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~- 254 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKV- 254 (383)
T ss_pred CcEEEEEeCCCChHHHHHHHHhcCCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhc-
Confidence 5789999999999777 899999999887777 55577788877777777 555 3344333233333333333321
Q ss_pred CCCCccchhchhhccccHHHHHHHc-----cCCEEEEeeeccCCccCc--cCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALK-----GLRAWITGQRKDQSPGTR--SEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 156 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~-----~~~~~i~G~R~~Es~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~ 156 (361)
+..+-|-.+|+.-++.+-+ +..+++||-...|=. .- .++..++.- .+..-++||+-
T Consensus 255 ------~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVA-SQTl~nL~~i~~~----------t~~pIlRPLI~ 317 (383)
T COG0301 255 ------PESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVA-SQTLENLRVIDSV----------TNTPVLRPLIG 317 (383)
T ss_pred ------CccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhh-HhHHHHHHHHHhc----------cCCceeccccC
Confidence 2334566666666665543 567899887666631 11 122222211 13557999999
Q ss_pred CcHHHHHHHHHhCCC
Q 018045 157 VKGNDIWNFLRTMDV 171 (361)
Q Consensus 157 W~~~dv~~yi~~~~l 171 (361)
|..+||-+..++-|-
T Consensus 318 ~DK~eIi~~Ar~IgT 332 (383)
T COG0301 318 LDKEEIIEIARRIGT 332 (383)
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999998774
No 258
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.45 E-value=0.00083 Score=50.90 Aligned_cols=80 Identities=9% Similarity=0.210 Sum_probs=58.8
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch----HHHHHcCCCCC-CCe
Q 018045 255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGS-FPT 329 (361)
Q Consensus 255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~----~l~~~~~~v~~-~Pt 329 (361)
+.++++++++ .+..++++|+=+++.|+-+......|++..+...+ .+.++.+|+-+. + .++ .+|+|.. -|.
T Consensus 6 t~eql~~i~~-~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~-R~vSn~IA-e~~~V~HeSPQ 81 (105)
T PF11009_consen 6 TEEQLEEILE-ESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEY-RPVSNAIA-EDFGVKHESPQ 81 (105)
T ss_dssp SHHHHHHHHH-H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGG-HHHHHHHH-HHHT----SSE
T ss_pred CHHHHHHHHH-hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeC-chhHHHHH-HHhCCCcCCCc
Confidence 4577888876 34588999999999999999999999999999876 599999999887 5 466 7899974 699
Q ss_pred EEEEeCCCC
Q 018045 330 ILFFPKHSS 338 (361)
Q Consensus 330 ~~~~~~g~~ 338 (361)
++++++|+.
T Consensus 82 ~ili~~g~~ 90 (105)
T PF11009_consen 82 VILIKNGKV 90 (105)
T ss_dssp EEEEETTEE
T ss_pred EEEEECCEE
Confidence 999999984
No 259
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.44 E-value=0.0004 Score=50.43 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=41.9
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----hHHHHHcCCCCCCCeEEEEeCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----~~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
++.|+++|||+|+.+.+.++++.. .+.++.++.+.+. ..+. +..++.++|++ |-+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~-~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQ-ELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHH-HHhCCCCCCeE--EECCE
Confidence 588999999999999999998754 2566777766541 1344 55688899996 44554
No 260
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=97.36 E-value=0.00075 Score=58.81 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=67.7
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceEEE-ccCC-----CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFS-LDTG-----RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 83 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~-~dtg-----~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~ 83 (361)
++++++||||||++. +.+.+. .++..++ .-.. ...-...+.++..++.+|++++.+......
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~---------- 70 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEE---------- 70 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCch----------
Confidence 578999999999866 656555 4443332 2111 111224477889999999998765322110
Q ss_pred CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 161 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d 161 (361)
...++.+.+.++ +.+.+++|-=..+- +|......-.. -++..+.||..-..++
T Consensus 71 -------------e~~~~~l~~~l~~~gv~~vv~GdI~s~~--qr~~~e~vc~~----------~gl~~~~PLW~~d~~~ 125 (222)
T TIGR00289 71 -------------EKEVEDLAGQLGELDVEALCIGAIESNY--QKSRIDKVCRE----------LGLKSIAPLWHADPEK 125 (222)
T ss_pred -------------hHHHHHHHHHHHHcCCCEEEECccccHH--HHHHHHHHHHH----------cCCEEeccccCCCHHH
Confidence 011122222222 56778888766553 33332211111 1566899999888877
Q ss_pred HHHHH
Q 018045 162 IWNFL 166 (361)
Q Consensus 162 v~~yi 166 (361)
+-+++
T Consensus 126 l~e~i 130 (222)
T TIGR00289 126 LMYEV 130 (222)
T ss_pred HHHHH
Confidence 65544
No 261
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.34 E-value=0.0015 Score=64.99 Aligned_cols=95 Identities=12% Similarity=0.137 Sum_probs=72.6
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE
Q 018045 252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331 (361)
Q Consensus 252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~ 331 (361)
..|+++..+.+.+ + .+..-+-.|+++.||+|......+++++...+ +|..-.+|.... ++++ ++|++.++|+++
T Consensus 102 ~~l~~~~~~~~~~-~-~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~-~~~~-~~~~v~~VP~~~ 175 (515)
T TIGR03140 102 PKLDEGIIDRIRR-L-NGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALF-QDEV-EALGIQGVPAVF 175 (515)
T ss_pred CCCCHHHHHHHHh-c-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhC-HHHH-HhcCCcccCEEE
Confidence 4466565555443 1 23445889999999999999999999998876 499999999999 9999 999999999997
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045 332 FFPKHSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 332 ~~~~g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
+ +|+ ..+.| ..+.+++.+.+.
T Consensus 176 i--~~~---~~~~g-~~~~~~~~~~l~ 196 (515)
T TIGR03140 176 L--NGE---EFHNG-RMDLAELLEKLE 196 (515)
T ss_pred E--CCc---EEEec-CCCHHHHHHHHh
Confidence 6 454 33445 567777766654
No 262
>PRK00768 nadE NAD synthetase; Reviewed
Probab=97.28 E-value=0.0017 Score=58.16 Aligned_cols=148 Identities=10% Similarity=0.079 Sum_probs=76.1
Q ss_pred CcEEEEecchHHHHHH-HHHHHc----C-----CCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEc--CChHHHHH
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT----G-----RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMF--PDAVEVQA 76 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~----~-----~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~--p~~~~~~~ 76 (361)
..++|+.|||-||.++ .|+.+. + +.+.++.+=.-...+++.+.++.+++.+|+ ++.++. |....+..
T Consensus 39 ~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~ 118 (268)
T PRK00768 39 KSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDRVLTVNIKPAVDASVA 118 (268)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHH
Confidence 6899999999999877 555542 2 122233222222346678889999999999 666553 22222222
Q ss_pred HHHhcCCCCCCccchhchhhccccHHHHHHHccCCEEEEee-eccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045 77 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA 155 (361)
Q Consensus 77 ~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~-R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~ 155 (361)
.+...+... ..-....-...+++.-+..+.......+.|. +++|.. ...-.+|+ .+..-++||.
T Consensus 119 ~l~~~~~~~-~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N~sE~~--------~Gy~TkyG------D~~~d~~pi~ 183 (268)
T PRK00768 119 ALEAAGIEL-SDFVKGNIKARERMIAQYAIAGATGGLVVGTDHAAEAV--------TGFFTKFG------DGGADILPLF 183 (268)
T ss_pred HHhhcCCCc-hhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCcccHHH--------hCceeccC------Cccccchhhc
Confidence 221111100 0000011111122222222222334444444 233321 11111221 1234699999
Q ss_pred cCcHHHHHHHHHhCCCC
Q 018045 156 NVKGNDIWNFLRTMDVP 172 (361)
Q Consensus 156 ~W~~~dv~~yi~~~~lp 172 (361)
+++..+|++..+..++|
T Consensus 184 ~L~KteV~~La~~l~vP 200 (268)
T PRK00768 184 GLNKRQGRALLAALGAP 200 (268)
T ss_pred CCcHHHHHHHHHHhCCC
Confidence 99999999999999976
No 263
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.27 E-value=0.0011 Score=57.11 Aligned_cols=77 Identities=22% Similarity=0.382 Sum_probs=54.3
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEE---------------------------------------
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF--------------------------------------- 308 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~v--------------------------------------- 308 (361)
..+..++.|+.+.|++|+++.+.+.+. .+ ++.+..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 467899999999999999999998761 11 2222221
Q ss_pred ------EcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 309 ------RADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 309 ------d~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
+++++ ..++ ++++|+++|+++ |.+|.. ..| ..+.++|.++|
T Consensus 151 ~~~~~~~i~~~-~~l~-~~~gi~gtPtii-~~~G~~----~~G-~~~~~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAAN-LALG-RQLGVNGTPTIV-LADGRV----VPG-APPAAQLEALL 197 (197)
T ss_pred ccccCchHHHH-HHHH-HHcCCCcccEEE-ECCCeE----ecC-CCCHHHHHhhC
Confidence 12222 5677 789999999997 777762 344 67788887764
No 264
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=97.26 E-value=0.0011 Score=48.78 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=43.8
Q ss_pred EEEEecchHHHHHH-HHHHHc---CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 12 IAIAFSGAEDVALI-EYAHLT---GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 12 i~vs~SGGKDS~~l-~l~~~~---~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
|++++|||+||.++ +++.+. +..+.++++| ..++.+.+.++++|.+..+.-..
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~Iv~G~~ 57 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV------AFVRILKRLAAEEGADVIILGHN 57 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH------HHHHHHHHHHHHcCCCEEEEcCC
Confidence 57899999999866 777776 7778888888 88889999999999998776443
No 265
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.25 E-value=0.00064 Score=51.80 Aligned_cols=89 Identities=8% Similarity=0.132 Sum_probs=64.0
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCC--ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC
Q 018045 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPW--CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 325 (361)
Q Consensus 248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~w--C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~ 325 (361)
......++.++++.++. .....+++|..+. ++.+....=++-++.+.+.+ .+..+.|.-+.+ ..+. .+|++.
T Consensus 8 ~~g~~~vd~~~ld~~l~---~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e-~~L~-~r~gv~ 81 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFLA---APGDAVLFFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAE-RALA-ARFGVR 81 (107)
T ss_dssp T-TEEEE-CCCHHHHHH---CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHH-HHHH-HHHT-T
T ss_pred hcCCeeechhhHHHHHh---CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhH-HHHH-HHhCCc
Confidence 34577889999999987 5666665555432 45555555578888888887 677777775555 8999 999999
Q ss_pred CCCeEEEEeCCCCCeeecC
Q 018045 326 SFPTILFFPKHSSKPIKYP 344 (361)
Q Consensus 326 ~~Pt~~~~~~g~~~~~~~~ 344 (361)
.+|+++++++|+ .....
T Consensus 82 ~~PaLvf~R~g~--~lG~i 98 (107)
T PF07449_consen 82 RWPALVFFRDGR--YLGAI 98 (107)
T ss_dssp SSSEEEEEETTE--EEEEE
T ss_pred cCCeEEEEECCE--EEEEe
Confidence 999999999998 44433
No 266
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.23 E-value=0.0037 Score=45.41 Aligned_cols=70 Identities=13% Similarity=0.207 Sum_probs=50.3
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH--HcCCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKHSSKPIKYPSERRDV 350 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~--~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~ 350 (361)
+..|..+||++|...+..|++ .++.|-.+|++.+ ++... +..+...+|++++ ++. ...| .+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~----~~~G--f~~ 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDL----SWSG--FRP 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCE----EEec--CCH
Confidence 678899999999999988854 2589999999887 54320 2346789999965 332 2234 678
Q ss_pred HHHHHHHH
Q 018045 351 DSLMAFVD 358 (361)
Q Consensus 351 ~~l~~~i~ 358 (361)
+.|.+.+.
T Consensus 67 ~~l~~~~~ 74 (81)
T PRK10329 67 DMINRLHP 74 (81)
T ss_pred HHHHHHHH
Confidence 88887764
No 267
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.20 E-value=0.00098 Score=47.24 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=46.8
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHc---CCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK---LQLGSFPTILFFPKHSSKPIKYPSERRD 349 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~---~~v~~~Pt~~~~~~g~~~~~~~~~~~~~ 349 (361)
+..|..++|+.|+..+..|++. ++.|-.+|++++ ++.. .. .+..++|++++ +|.. ...| .+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~~di~~~-~~~~-~~~~~~g~~~vP~v~~--~g~~---~~~G--~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-------GIAFEEINIDEQ-PEAI-DYVKAQGFRQVPVIVA--DGDL---SWSG--FR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-------CCceEEEECCCC-HHHH-HHHHHcCCcccCEEEE--CCCc---EEec--cC
Confidence 3578899999999999888752 588888999887 5444 33 47789999755 3431 2222 66
Q ss_pred HHHHHH
Q 018045 350 VDSLMA 355 (361)
Q Consensus 350 ~~~l~~ 355 (361)
++.|.+
T Consensus 65 ~~~~~~ 70 (72)
T TIGR02194 65 PDKLKA 70 (72)
T ss_pred HHHHHh
Confidence 666654
No 268
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.20 E-value=0.0014 Score=45.69 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=40.0
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEEEeCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~~~~g~ 337 (361)
++.|+++||++|+.+...|.+.. +.+..+|++.+ .+... +..+..++|+++ .+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDILED-GELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECCCC-HHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 67899999999999999988663 67778888877 43320 345667888774 3554
No 269
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.17 E-value=0.0023 Score=55.60 Aligned_cols=108 Identities=10% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC---------------
Q 018045 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--------------- 312 (361)
Q Consensus 248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~--------------- 312 (361)
++.|+.+++++...+..-.+.++|++|+|.+-.||+-+.-.+.+++++++|.+ .+.|+.|-+.+
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~VYI~EAHpsDgW~~~~~~~~ 159 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIVYIEEAHPSDGWAFGNNPYE 159 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehhhHhhhCcCCCccCCCCcee
Confidence 34688888877555555455899999999999999999999999999999987 44555443321
Q ss_pred ---Cc---------hHHH-----------------HHcCCCCCCC-eEEEEeCCCCCeeecCCC----CCCHHHHHHHHH
Q 018045 313 ---DQ---------KEYA-----------------KQKLQLGSFP-TILFFPKHSSKPIKYPSE----RRDVDSLMAFVD 358 (361)
Q Consensus 313 ---~~---------~~l~-----------------~~~~~v~~~P-t~~~~~~g~~~~~~~~~~----~~~~~~l~~~i~ 358 (361)
.. +.+. +..|+ .+| .++++++|+ +.|.|| ..+.+++.+||+
T Consensus 160 i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gk---v~Y~Gg~GP~~y~~~e~r~~L~ 234 (237)
T PF00837_consen 160 IPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGK---VVYKGGPGPFGYSPEELREWLE 234 (237)
T ss_pred ecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCE---EEEeCCCCCCcCCHHHHHHHHH
Confidence 10 0111 01222 467 466677776 666664 368999999999
Q ss_pred HhC
Q 018045 359 ALR 361 (361)
Q Consensus 359 ~~~ 361 (361)
+++
T Consensus 235 ~~~ 237 (237)
T PF00837_consen 235 KYK 237 (237)
T ss_pred hcC
Confidence 864
No 270
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.14 E-value=0.0017 Score=46.91 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=49.3
Q ss_pred CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCC
Q 018045 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE 346 (361)
Q Consensus 269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~ 346 (361)
++.-++.|+.+||++|+..+..|++. ++.+-.+|++.+. ..+. ...+..++|.+++ +|+ . .||
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~-~~~g~~~vP~i~i--~g~--~---igG 70 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLR-AVTGATTVPQVFI--GGK--L---IGG 70 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHH-HHHCCCCcCeEEE--CCE--E---EcC
Confidence 44558899999999999999888642 4777778887651 2344 4568899999854 554 1 232
Q ss_pred CCCHHHHHHHH
Q 018045 347 RRDVDSLMAFV 357 (361)
Q Consensus 347 ~~~~~~l~~~i 357 (361)
.++|.+||
T Consensus 71 ---~~~l~~~l 78 (79)
T TIGR02190 71 ---SDELEAYL 78 (79)
T ss_pred ---HHHHHHHh
Confidence 36676665
No 271
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=97.13 E-value=0.0023 Score=57.04 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=63.6
Q ss_pred CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHHHHhcCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QALVRSKGL 83 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~~~~~~~~~ 83 (361)
.++.+.+|||-||.++ .++.+ .+.++..+.++.+...+.=..+++++++.+|++++.+......+ ...+...+.
T Consensus 18 ~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (255)
T PF00733_consen 18 KPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDPEDLLDNLEDIIWRLDG 97 (255)
T ss_dssp SEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHHT-
T ss_pred CCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHHHhcccccccceeeechhhHHHhHHHHHHHHhC
Confidence 6899999999999877 77777 67788889988887766566889999999999987766554333 222222222
Q ss_pred CCCCccchhchhhccccHHHHHHH--ccCCEEEEeeeccCCc
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSP 123 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~--~~~~~~i~G~R~~Es~ 123 (361)
|. ....+....-.. +.+.. .+.+++++|.-.||-.
T Consensus 98 p~----~~~~~~~~~~~~-~~~~a~~~~~~~~ltG~GgDelf 134 (255)
T PF00733_consen 98 PS----PLDDPNSLPLYL-LARLARENGIRVLLTGQGGDELF 134 (255)
T ss_dssp ------HHHHHHHHHHHH-HHHHHCHTTBSEEE--TTHHHHH
T ss_pred Cc----ccccccccHHHH-HHHhhcccceeEEEecccccccc
Confidence 11 100111111111 22222 3678999999999864
No 272
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=97.10 E-value=0.0022 Score=62.89 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=66.2
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCC--CceEEEccCC--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHHHHh
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGR--PFRVFSLDTG--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QALVRS 80 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~--~i~v~~~dtg--~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~~~~~~ 80 (361)
.++.+.+|||.||.++ .++.+... ++..+.++.+ ..+.| ..+++++++++|++.+.+......+ ...+..
T Consensus 254 ~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~~E-~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~ 332 (467)
T TIGR01536 254 VPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDFDE-SPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYH 332 (467)
T ss_pred CceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCCCh-HHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHh
Confidence 4789999999999877 67766543 5777777665 34555 4689999999999988776554322 222222
Q ss_pred cCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCc
Q 018045 81 KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 123 (361)
Q Consensus 81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~ 123 (361)
.+.|. .. +...-...+.+..+ +.+++++|.-+||-.
T Consensus 333 ~~~p~------~~-~~~~~~~~l~~~a~~~G~~vlltG~GaDElf 370 (467)
T TIGR01536 333 LEDPT------TI-RASIPLYLLSKLAREDGVKVVLSGEGADELF 370 (467)
T ss_pred hCCCC------CC-chHHHHHHHHHHHHhcCCEEEEecCcchhcc
Confidence 22111 01 11112223333333 468999999999974
No 273
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.99 E-value=0.002 Score=48.79 Aligned_cols=55 Identities=18% Similarity=0.339 Sum_probs=37.6
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--h----HHHHHcCCCCCCCeEEEEeCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--K----EYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~----~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
++.|..+|||+|++++..|.+. ++.+..+|++... . .+. +..+..++|.+ |-+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~-~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALS-RLGCSPAVPAV--FVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHH-HhcCCCCcCeE--EECCE
Confidence 7789999999999999877654 3555566666541 1 223 33467899997 44554
No 274
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.98 E-value=0.003 Score=44.79 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=39.2
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCCCCCCeEE
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTIL 331 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v~~~Pt~~ 331 (361)
++.|+.++|+.|+..+..|++. ++.+..+|++.+ .+ +. +..+-..+|+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-------gi~~~~~di~~~-~~~~~el~-~~~g~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-------GLPYVEINIDIF-PERKAELE-ERTGSSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-------CCceEEEECCCC-HHHHHHHH-HHhCCCCcCEEE
Confidence 6789999999999999888862 588888899887 43 44 455667889983
No 275
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.97 E-value=0.0018 Score=46.66 Aligned_cols=55 Identities=22% Similarity=0.501 Sum_probs=39.2
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEEEeCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~~~~g~ 337 (361)
++.|+.++|+.|...+..|++. ++.+-.+|++.+ +.... +..+..++|++++ +|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i--~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFI--GDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 4678899999999999998753 467777788776 43330 3346788999733 454
No 276
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=96.95 E-value=0.0077 Score=53.94 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=82.9
Q ss_pred CcEEEEecchHHHHHH-HHHHHc-CC-----CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEE--cCChHHH-HHHHH
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT-GR-----PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM--FPDAVEV-QALVR 79 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~-~~-----~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~--~p~~~~~-~~~~~ 79 (361)
..++++.|||-||++. .|+.+. ++ ++..+.+..+.--+.+.+-+..+++.+|++...+ +|....+ .....
T Consensus 26 k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~ 105 (268)
T COG0171 26 KGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLK 105 (268)
T ss_pred CCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHHHHHHhhhh
Confidence 6899999999999877 676663 32 2666777766435778888999999999985543 2222221 11111
Q ss_pred hcCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcH
Q 018045 80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG 159 (361)
Q Consensus 80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~ 159 (361)
.........-....-....++..+-.+.......+.|. ++++... ..+-.+|+ .+-.-++||.+...
T Consensus 106 ~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGT------gn~sE~~-~Gy~TkyG------Dg~~d~~Pi~~L~K 172 (268)
T COG0171 106 LFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGT------GNKSELA-LGYFTKYG------DGAVDINPIADLYK 172 (268)
T ss_pred hhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcC------CcHHHHh-cCceeccc------CcccChhhhcCCcH
Confidence 11000000000011112222233333333445555554 1332221 12222232 13346999999999
Q ss_pred HHHHHHHHhCCCCC
Q 018045 160 NDIWNFLRTMDVPI 173 (361)
Q Consensus 160 ~dv~~yi~~~~lp~ 173 (361)
.+|++.++..++|-
T Consensus 173 tqV~~La~~l~ipe 186 (268)
T COG0171 173 TQVYALARHLGIPE 186 (268)
T ss_pred HHHHHHHHHcCCCH
Confidence 99999999777765
No 277
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.95 E-value=0.003 Score=44.92 Aligned_cols=55 Identities=18% Similarity=0.353 Sum_probs=39.6
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCC-CCCeEEEEeCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLG-SFPTILFFPKHS 337 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~-~~Pt~~~~~~g~ 337 (361)
++.|..++|+.|...+..|++. ++.+-.+|++.+ ++... +..+.. ++|+++ -+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGD-PALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 5789999999999999888762 578888888876 44330 234655 899774 3454
No 278
>PHA03050 glutaredoxin; Provisional
Probab=96.93 E-value=0.0027 Score=48.85 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=37.9
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--c----hHHHHHcCCCCCCCeEEE
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--Q----KEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--~----~~l~~~~~~v~~~Pt~~~ 332 (361)
++.|..+|||+|+..+..|++..-..+ .|-.+|+++. . ..+. +..+..++|++++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~-~~tG~~tVP~IfI 75 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFE-QITGGRTVPRIFF 75 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHH-HHcCCCCcCEEEE
Confidence 889999999999999988877643221 3555566542 1 2344 5567789999843
No 279
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.92 E-value=0.0059 Score=54.60 Aligned_cols=84 Identities=15% Similarity=0.257 Sum_probs=58.2
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc----------------C--------------------
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA----------------D-------------------- 311 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~----------------~-------------------- 311 (361)
+.+.+++.|.-+.|++|+++.+.+.++.+. + +|.+..+-. .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 466789999999999999999998776543 1 233332211 0
Q ss_pred C----C---------chHHHHHcCCCCCCCeEEEEeC-CCCCeeecCCCCCCHHHHHHHHH
Q 018045 312 G----D---------QKEYAKQKLQLGSFPTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 312 ~----~---------~~~l~~~~~~v~~~Pt~~~~~~-g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
. . +..+. ++++|+++|++++-+. |. +....| ..++++|.+.|.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~-~~lGv~GTPaiv~~d~~G~--~~~v~G-~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLM-DDLGANATPAIYYMDKDGT--LQQVVG-LPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHH-HHcCCCCCCEEEEECCCCC--EEEecC-CCCHHHHHHHhC
Confidence 0 0 03366 6899999999999863 43 445555 678999998875
No 280
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=96.87 E-value=0.0038 Score=53.56 Aligned_cols=127 Identities=14% Similarity=0.206 Sum_probs=82.8
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceE-EE--ccCC----CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRV-FS--LDTG----RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKG 82 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v-~~--~dtg----~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~ 82 (361)
++++.+||||||+.. |++.+.+.++.. +. -..+ +|+| -.++++.+++-.|+++........
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~-n~~~~~~~Ae~~gi~l~~~~~~g~---------- 70 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENGDSYMFHTP-NLELAELQAEAMGIPLVTFDTSGE---------- 70 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCCCeeeeecc-chHHHHHHHHhcCCceEEEecCcc----------
Confidence 578899999999866 899988877643 22 2222 1223 457788889999999877654431
Q ss_pred CCCCCccchhchhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHH
Q 018045 83 LFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN 160 (361)
Q Consensus 83 ~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~ 160 (361)
....++.+..++++. +.+++|-=+.+- ++..+..+... -+...+.||..-..+
T Consensus 71 -------------~e~eve~L~~~l~~l~~d~iv~GaI~s~y--qk~rve~lc~~----------lGl~~~~PLWg~d~~ 125 (223)
T COG2102 71 -------------EEREVEELKEALRRLKVDGIVAGAIASEY--QKERVERLCEE----------LGLKVYAPLWGRDPE 125 (223)
T ss_pred -------------chhhHHHHHHHHHhCcccEEEEchhhhHH--HHHHHHHHHHH----------hCCEEeecccCCCHH
Confidence 222334555566644 478888766664 44433322211 256789999999999
Q ss_pred HHHHHHHhCCCCC
Q 018045 161 DIWNFLRTMDVPI 173 (361)
Q Consensus 161 dv~~yi~~~~lp~ 173 (361)
++-.-+-..|+..
T Consensus 126 ell~e~~~~Gf~~ 138 (223)
T COG2102 126 ELLEEMVEAGFEA 138 (223)
T ss_pred HHHHHHHHcCCeE
Confidence 9988888887543
No 281
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.84 E-value=0.011 Score=49.82 Aligned_cols=68 Identities=26% Similarity=0.453 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 286 AMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 286 ~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
.+...|.++|+.+.+ .+.|+.+. + .+++ +++++.. |++++|+++......|.|...+.++|.+||++-
T Consensus 7 ~~~~~f~~~A~~~~~-~~~F~~~~---~-~~~~-~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG-DYQFGVTF---N-EELA-KKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE-----HHHH-HHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-CcEEEEEc---H-HHHH-HHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 356789999999997 69999887 4 7889 8999998 999999986666899998437999999999863
No 282
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.74 E-value=0.0061 Score=43.02 Aligned_cols=67 Identities=18% Similarity=0.338 Sum_probs=47.0
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDV 350 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~ 350 (361)
++.|..+||+.|...+..|++. ++.+..+|++.+. ..+. ...+...+|.+ |-+|+ .+ || .
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~-~~~g~~~vP~i--fi~g~--~i---gg---~ 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLR-AVTGAMTVPQV--FIDGE--LI---GG---S 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHH-HHhCCCCcCeE--EECCE--EE---eC---H
Confidence 6889999999999998888742 4778888887761 1233 34578899997 34455 22 32 5
Q ss_pred HHHHHHH
Q 018045 351 DSLMAFV 357 (361)
Q Consensus 351 ~~l~~~i 357 (361)
++|.+||
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 7777775
No 283
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0069 Score=56.82 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=53.6
Q ss_pred CHHHHhHhC-CcEEEEecchHHHHHH-HHHHH-cCC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh
Q 018045 1 MDRALEKFG-NDIAIAFSGAEDVALI-EYAHL-TGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA 71 (361)
Q Consensus 1 i~~~~~~~~-~~i~vs~SGGKDS~~l-~l~~~-~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~ 71 (361)
|+|+.+..| .+++++.|||-||+|+ .|+.+ .++ .+.++++|.|..-..--+-+++....+|++++++....
T Consensus 221 I~~i~k~vG~~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~as~ 295 (552)
T KOG1622|consen 221 INEIRKWVGDYKVLVAVSGGVDSTVCAALLRRALGPDRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDASE 295 (552)
T ss_pred HHHHHHHhcccceEEEecCCchHHHHHHHHHHhhCCCceEEEEecccchhhhHHHHHHHHHHHcCCceEEeechH
Confidence 356666666 6899999999999988 55555 564 57899999997655555666666677999999886543
No 284
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=96.70 E-value=0.0041 Score=52.65 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=80.5
Q ss_pred CcEEEEecchHHHHHHH-HHHHcCCCceEEEccCC--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045 10 NDIAIAFSGAEDVALIE-YAHLTGRPFRVFSLDTG--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 86 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l~-l~~~~~~~i~v~~~dtg--~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~ 86 (361)
.+++||+|||-||++.. +++..+ +.+|.| ...+++..-+++++..+|.....+..+... +.+.-+++-
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~g-----~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~~----i~kGalnGR 131 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWAG-----FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLED----IEKGALNGR 131 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhhc-----eeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHHH----HHhhhccCC
Confidence 37999999999998884 555566 445555 455699999999999999766554332222 222212221
Q ss_pred CccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEe-e-CccCcHHHH
Q 018045 87 YEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN-P-VANVKGNDI 162 (361)
Q Consensus 87 ~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-P-i~~W~~~dv 162 (361)
. .++--|.-+=+.......+ +.+++++|--..-. ...+..+ .+++++| | .+--|..|+
T Consensus 132 f--hpCGRCh~~I~~~V~~k~re~di~~vafGDlLs~G------~~svy~e----------D~i~rlnlPAflAltK~El 193 (255)
T COG1365 132 F--HPCGRCHSMIENAVMDKARELDIDVVAFGDLLSTG------YGSVYRE----------DGIFRLNLPAFLALTKDEL 193 (255)
T ss_pred C--CCcchHHHHHHHHHHHHHHhcCCeEEEEccccccc------ccceecc----------CCEEEEccHHHHhhCcHHH
Confidence 1 1222244443444444444 44688887544332 1111111 2455554 2 346799999
Q ss_pred HHHHHhCCCCC
Q 018045 163 WNFLRTMDVPI 173 (361)
Q Consensus 163 ~~yi~~~~lp~ 173 (361)
...+..+++..
T Consensus 194 r~il~~~~~e~ 204 (255)
T COG1365 194 RSILKWNGYEL 204 (255)
T ss_pred HHHHHhcCccc
Confidence 99999999866
No 285
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.66 E-value=0.0066 Score=44.97 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=44.7
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc--CCC-----------------------------chHHHHHc
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA--DGD-----------------------------QKEYAKQK 321 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~--~~~-----------------------------~~~l~~~~ 321 (361)
++.|+.+.|++|..+.+.+.++.....+ ++.+..+.+ ... ...+. .+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA-RA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-HH
Confidence 4689999999999999999999866655 566655543 211 02345 67
Q ss_pred CCCCCCCeEEEEe
Q 018045 322 LQLGSFPTILFFP 334 (361)
Q Consensus 322 ~~v~~~Pt~~~~~ 334 (361)
+++.++||+++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999999875
No 286
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.57 E-value=0.016 Score=58.22 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=66.9
Q ss_pred CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe-CCCCCeeecCCCC
Q 018045 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP-KHSSKPIKYPSER 347 (361)
Q Consensus 269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~~~ 347 (361)
+...++.|..+.|..|..+...++++++. .+ .+.+...|...+ .+++ ++|+|...|++.+++ +|...-+.|.| -
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~-~i~~~~~~~~~~-~~~~-~~~~v~~~P~~~i~~~~~~~~~i~f~g-~ 440 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFASL-SE-KLNSEAVNRGEE-PESE-TLPKITKLPTVALLDDDGNYTGLKFHG-V 440 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHhc-CC-cEEEEEeccccc-hhhH-hhcCCCcCCEEEEEeCCCcccceEEEe-c
Confidence 34457788888999999999999999854 44 688888898888 8889 899999999999995 55433477776 3
Q ss_pred CCHHHHHHHHHHh
Q 018045 348 RDVDSLMAFVDAL 360 (361)
Q Consensus 348 ~~~~~l~~~i~~~ 360 (361)
-.-.+|..||..+
T Consensus 441 P~G~Ef~s~i~~i 453 (555)
T TIGR03143 441 PSGHELNSFILAL 453 (555)
T ss_pred CccHhHHHHHHHH
Confidence 4456677766543
No 287
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=96.54 E-value=0.0023 Score=55.68 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=58.9
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceE-EE-ccCCC---CcHH-HHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRV-FS-LDTGR---LNPE-TYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 83 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v-~~-~dtg~---~~pe-t~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~ 83 (361)
+++++|||||||++. +.+.+. .++.. ++ ...+. -|.. ..+.++..++.+|+++..+......
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~---------- 70 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDE---------- 70 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT--EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---C----------
T ss_pred cEEEEEcCcHHHHHHHHHHHHh-CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCcc----------
Confidence 578999999999866 666666 55533 22 22221 1222 2667889999999998765332100
Q ss_pred CCCCccchhchhhccccHHHHHHHcc--CCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 161 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~~--~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d 161 (361)
.--.+-+..+++. .+.++.|-=..+- +|......-.. -|+..+.||..-+.++
T Consensus 71 -------------~~~~~~l~~~l~~~~v~~vv~GdI~~~~--~r~~~e~vc~~----------lGl~~~~PLW~~d~~~ 125 (218)
T PF01902_consen 71 -------------EDYVEDLKEALKELKVEAVVFGDIDSEY--QRNWVERVCER----------LGLEAVFPLWGRDREE 125 (218)
T ss_dssp -------------CCHHHHHHHHHCTC--SEEE--TTS-HH--HHHHHHHHHHH----------CT-EEE-TTTT--HHH
T ss_pred -------------chhhHHHHHHHHHcCCCEEEECcCCcHH--HHHHHHHHHHH----------cCCEEEecccCCCHHH
Confidence 0001233344443 3466666554442 33322211111 1566789999888877
Q ss_pred HHHHHHhCCC
Q 018045 162 IWNFLRTMDV 171 (361)
Q Consensus 162 v~~yi~~~~l 171 (361)
+..-+.+.|+
T Consensus 126 ll~e~i~~Gf 135 (218)
T PF01902_consen 126 LLREFIESGF 135 (218)
T ss_dssp HHHHHHHTT-
T ss_pred HHHHHHHCCC
Confidence 7665554443
No 288
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.012 Score=42.54 Aligned_cols=52 Identities=19% Similarity=0.457 Sum_probs=39.1
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----hHHHHHcC-CCCCCCeEEE
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKL-QLGSFPTILF 332 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----~~l~~~~~-~v~~~Pt~~~ 332 (361)
++.|..++||+|...+..|.+ .++.|..+|++..+ .+.. ++. +..++|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g~~~~~i~~~~~~~~~~~~~~-~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KGVDYEEIDVDDDEPEEAREMV-KRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cCCCcEEEEecCCcHHHHHHHH-HHhCCCCCcCEEEE
Confidence 678899999999999988872 26888888887763 2344 344 6899999766
No 289
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.42 E-value=0.018 Score=43.37 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=37.8
Q ss_pred CCcEEEEEE----CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEE
Q 018045 269 QEPWLVVLY----APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILF 332 (361)
Q Consensus 269 ~~~vlv~F~----a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~ 332 (361)
...|+|+-. +||||+|...+..|.+. ++.|..+|++.+ .++.. +..+...+|.+++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE
Confidence 445555443 39999999999888764 467788888776 43220 3456678998743
No 290
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.39 E-value=0.015 Score=43.13 Aligned_cols=58 Identities=22% Similarity=0.448 Sum_probs=39.3
Q ss_pred CCcEEEEEEC----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCCCCCCeEEEEeCCC
Q 018045 269 QEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 269 ~~~vlv~F~a----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
+.+|+|+-.. |||++|+..+..|++. ++.|..+|++.+ .+ +. +..+-.++|.++ -+|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~-~~~~~~l~-~~~g~~tvP~vf--i~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDILED-EEVRQGLK-EYSNWPTFPQLY--VNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcCCC-HHHHHHHH-HHhCCCCCCEEE--ECCE
Confidence 4555554332 7999999999888775 367777788766 43 33 445778899973 3554
No 291
>PRK10638 glutaredoxin 3; Provisional
Probab=96.30 E-value=0.015 Score=42.29 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=39.7
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch----HHHHHcCCCCCCCeEEEEeCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~----~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
++.|..++|++|+.....+++. ++.+..+|++.+ . ++. +..+...+|++++ +|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~-~~~~~~l~-~~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGD-AAKREEMI-KRSGRTTVPQIFI--DAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCC-HHHHHHHH-HHhCCCCcCEEEE--CCE
Confidence 6688899999999999888853 477777888776 4 334 4457788998743 454
No 292
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.12 E-value=0.093 Score=40.00 Aligned_cols=90 Identities=13% Similarity=0.262 Sum_probs=62.9
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045 255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 334 (361)
Q Consensus 255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~ 334 (361)
+.+++++++. .++.++|-|+..--. .+...+.++|+.+.+ ++.|+... . .++. ..+++ .|++++|+
T Consensus 7 s~~~l~~f~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~--~~~ivl~~ 72 (104)
T cd03069 7 TEAEFEKFLS---DDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---D-KQLL-EKYGY--GEGVVLFR 72 (104)
T ss_pred CHHHHHHHhc---cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---h-HHHH-HhcCC--CCceEEEe
Confidence 3345666665 677788877766433 467789999999976 67886533 2 4667 78888 78888883
Q ss_pred C------CCCCeeecCCCCCCHHHHHHHHHH
Q 018045 335 K------HSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 335 ~------g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
. -......|.| ..+.++|.+||..
T Consensus 73 p~~~~~k~de~~~~y~g-~~~~~~l~~fi~~ 102 (104)
T cd03069 73 PPRLSNKFEDSSVKFDG-DLDSSKIKKFIRE 102 (104)
T ss_pred chhhhcccCcccccccC-cCCHHHHHHHHHh
Confidence 3 1222456877 5789999999975
No 293
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.64 E-value=0.0058 Score=54.79 Aligned_cols=87 Identities=18% Similarity=0.380 Sum_probs=69.2
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 347 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~ 347 (361)
+...+-+.||+.||+..+..+|.+.-....+.. +....|+-....+.+. .+|++.+.|++.+...-- +..|.| .
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~--i~h~~vee~~~lpsv~-s~~~~~~~ps~~~~n~t~--~~~~~~-~ 148 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS--IQHFAVEESQALPSVF-SSYGIHSEPSNLMLNQTC--PASYRG-E 148 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccc--cccccHHHHhhcccch-hccccccCCcceeecccc--chhhcc-c
Confidence 467899999999999999999999999998874 4444443222226777 899999999999997655 677777 7
Q ss_pred CCHHHHHHHHHHh
Q 018045 348 RDVDSLMAFVDAL 360 (361)
Q Consensus 348 ~~~~~l~~~i~~~ 360 (361)
++..+|++|..++
T Consensus 149 r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 149 RDLASLVNFYTEI 161 (319)
T ss_pred ccHHHHHHHHHhh
Confidence 9999999998764
No 294
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.56 E-value=0.03 Score=45.51 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEE
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 308 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~v 308 (361)
..+..++.|+.++||+|+.+.|.+.++...+.+ +.+...
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEE
Confidence 467889999999999999999999998877643 444433
No 295
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.026 Score=56.21 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=61.7
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCchHHHHHcCC-----
Q 018045 252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKLQ----- 323 (361)
Q Consensus 252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~----- 323 (361)
.....+.|.+.-. .+||++|....+||..|+.|..+= .++|+.++. ++.-++||-++- +++- +.|.
T Consensus 29 ~pW~~eAf~~A~~---edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREER-PDvD-~~Ym~~~q~ 102 (667)
T COG1331 29 YPWGEEAFAKAKE---EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREER-PDVD-SLYMNASQA 102 (667)
T ss_pred cccCHHHHHHHHH---hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhc-cCHH-HHHHHHHHH
Confidence 4567788888776 899999999999999999999863 778888887 788888888776 6655 4332
Q ss_pred ---CCCCCeEEEE-eCCC
Q 018045 324 ---LGSFPTILFF-PKHS 337 (361)
Q Consensus 324 ---v~~~Pt~~~~-~~g~ 337 (361)
--+.|-.+|. ++|+
T Consensus 103 ~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred hccCCCCceeEEECCCCc
Confidence 4478966666 5555
No 296
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.27 Score=40.29 Aligned_cols=92 Identities=14% Similarity=0.226 Sum_probs=66.1
Q ss_pred CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------chHHHHHcCCCCC
Q 018045 268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS 326 (361)
Q Consensus 268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~v~~ 326 (361)
.++.||++|| ..+++.|-...-.|++...+++..+..++.|..|.. +..++ +.|+|..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~-~~ygv~~ 107 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVA-EAYGVWG 107 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHH-HHhCccc
Confidence 5779999999 789999999999999999999876788888876543 15677 7888743
Q ss_pred ------------CCeEEEEeCCCCCeeecCC--CCCCHHHHHHHHHHh
Q 018045 327 ------------FPTILFFPKHSSKPIKYPS--ERRDVDSLMAFVDAL 360 (361)
Q Consensus 327 ------------~Pt~~~~~~g~~~~~~~~~--~~~~~~~l~~~i~~~ 360 (361)
.++.++++..+.+...+.. -.-.++++.+.|+++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4677777654433333322 123577888888765
No 297
>PRK10824 glutaredoxin-4; Provisional
Probab=95.21 E-value=0.075 Score=41.27 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=35.2
Q ss_pred CCcEEEEEEC----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEE
Q 018045 269 QEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILF 332 (361)
Q Consensus 269 ~~~vlv~F~a----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~ 332 (361)
..+|+|+--. ||||+|+.....|.++. +.+..+|++.+ .++.. +.-+-..+|.+++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-------i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG-------ERFAYVDILQN-PDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC-------CCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE
Confidence 4454444332 69999999998887762 45555677665 44330 3336678898655
No 298
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.02 E-value=0.55 Score=35.54 Aligned_cols=97 Identities=15% Similarity=0.247 Sum_probs=64.6
Q ss_pred ceec-CcccHHHHHhhcC-CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045 251 LVTL-NRTGMENLARLDH-RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328 (361)
Q Consensus 251 v~~l-~~~~f~~~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P 328 (361)
+..+ +.+++++++ + .+..++|-|+..--+ .....|.++|+.+.+ .+.|+... + .++. ..+++. .|
T Consensus 2 v~~i~~~~~~e~~~---~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~~-~~ 68 (102)
T cd03066 2 VEIINSERELQAFE---NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATF---D-SKVA-KKLGLK-MN 68 (102)
T ss_pred ceEcCCHHHHHHHh---cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEEC---c-HHHH-HHcCCC-CC
Confidence 3445 334466655 3 456666666665433 466789999999976 67885432 3 5666 677664 79
Q ss_pred eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
+++++++.......|.+|..+.+.|.+||+.-
T Consensus 69 ~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 69 EVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred cEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 99999763333566834478999999999753
No 299
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.07 Score=40.58 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=38.3
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEEEeCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~~~~g~ 337 (361)
+|.|..+||+.|+.++..|.+ +.- ...++.+|-+.+..++-+ +--+-+.+|.+++ +|+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v-~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGV-NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCC-CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence 677999999999998888877 332 567777776655333331 2223558888655 455
No 300
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=94.53 E-value=0.42 Score=43.03 Aligned_cols=56 Identities=14% Similarity=0.288 Sum_probs=43.3
Q ss_pred CcEEEEecchHH-HHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 018045 10 NDIAIAFSGAED-VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 67 (361)
Q Consensus 10 ~~i~vs~SGGKD-S~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~ 67 (361)
..+++|+|||-| |++|.++.+.+.++.++..|.|. .|-.+-+++-+.+.|.+-.++
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqGyeViay~AnvGQ--~edfe~ar~kAlk~Gakk~~~ 62 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQ--KEDFEEARKKALKSGAKKVVV 62 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcCceEEEeeccccc--hhhHHHHHHhhhhcCceEEEe
Confidence 478999999999 56678888899999999999996 455555666677777754443
No 301
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.53 E-value=0.089 Score=50.61 Aligned_cols=51 Identities=14% Similarity=0.355 Sum_probs=39.2
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH---HHHHc---------CCCCCCCeEEE
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE---YAKQK---------LQLGSFPTILF 332 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~---l~~~~---------~~v~~~Pt~~~ 332 (361)
++.|..+|||+|+..+..|.+. ++.|..||+++. +. +. ++ .+.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~~-~~~~~~~-~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDDD-VKRAEFY-AEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCCC-hhHHHHH-HHHhhccccccCCCCccCeEEE
Confidence 7889999999999999887763 588888999876 42 22 12 36778999866
No 302
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=94.51 E-value=0.13 Score=52.43 Aligned_cols=107 Identities=15% Similarity=0.082 Sum_probs=61.7
Q ss_pred CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCC-CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH---HHHHhcCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTG-RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ---ALVRSKGL 83 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg-~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~---~~~~~~~~ 83 (361)
.+|.+..|||-||.++ .++.+. ..++..+.+... ..+.|. .+++.+++++|.+.+++..+...+. ......+.
T Consensus 259 ~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~~~dE~-~~A~~vA~~~g~~h~~~~~~~~~~~~~~~~~~~~~~ 337 (628)
T TIGR03108 259 VPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDES-AYARQVAERYGTNHRVETVDPDDFSLVDRLAGLYDE 337 (628)
T ss_pred CcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCCCCChH-HHHHHHHHHhCCCCeEEecCHHHHHHHHHHHHHhCC
Confidence 3678889999999866 565553 445655544432 234554 8899999999999877655443322 22222222
Q ss_pred CCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCc
Q 018045 84 FSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSP 123 (361)
Q Consensus 84 ~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~ 123 (361)
|.. ....+.. ....+.+.++.+++++|.-+||-.
T Consensus 338 P~~--~~~~~~~----~~~~~~a~~~~kV~LsG~GgDElf 371 (628)
T TIGR03108 338 PFA--DSSALPT----YRVCELARKRVTVALSGDGGDELF 371 (628)
T ss_pred CCC--CchHHHH----HHHHHHHHCCCCEEEeccchhhcc
Confidence 211 1111111 111122234678999999999964
No 303
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.48 E-value=0.13 Score=42.22 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=35.7
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHh--cCCCeEEEEEEc
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKL--AGNGVKVGKFRA 310 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~--~~~~v~~~~vd~ 310 (361)
..+.+|+.|+...|++|..+.+.+.++.+.+ .+ .+.|...+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 5678899999999999999999999999998 55 788888765
No 304
>PTZ00062 glutaredoxin; Provisional
Probab=94.27 E-value=0.18 Score=43.41 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=32.9
Q ss_pred CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEE
Q 018045 278 APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILF 332 (361)
Q Consensus 278 a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~ 332 (361)
+|+|++|+++...|.+. ++.|..+|++.+ .++.. +..+-..+|.+++
T Consensus 125 ~p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 125 FPFCRFSNAVVNMLNSS-------GVKYETYNIFED-PDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred CCCChhHHHHHHHHHHc-------CCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE
Confidence 37999999998888753 477888898877 44330 2335567888664
No 305
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.10 E-value=0.14 Score=42.19 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=33.7
Q ss_pred CCcEEEEEE-CCCChhHHhh-HHHHHHHHHHhcCCCe-EEEEEEcCC
Q 018045 269 QEPWLVVLY-APWCQFCQAM-EGSYVELADKLAGNGV-KVGKFRADG 312 (361)
Q Consensus 269 ~~~vlv~F~-a~wC~~C~~~-~p~~~~la~~~~~~~v-~~~~vd~~~ 312 (361)
++.++|.|| +.||+.|... .+.|.+..+++...++ .++.|..|.
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 455666655 8999999998 9999999999876456 477776654
No 306
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.00 E-value=0.097 Score=43.81 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.8
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEE
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 306 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~ 306 (361)
..++.|+.|+...||+|+.+.+.+..+.+++++ ++.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEE
Confidence 578899999999999999999999999998865 55554
No 307
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=93.48 E-value=0.3 Score=48.74 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=60.8
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCC-ceE-EEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHHHHhc
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRP-FRV-FSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEV----QALVRSK 81 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~-i~v-~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~~~~~~~ 81 (361)
..+.+.+|||-||+++ .++.+.... ... +.++++.. ++| .++.+++++.+|.+.+.+.-....+ .+.+...
T Consensus 231 vpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D-~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~ 309 (542)
T COG0367 231 VPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPD-AKYARAVAKFLGTPHHEIILTNEELLNALPEVVKAL 309 (542)
T ss_pred CcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCCCch-HHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhc
Confidence 5788889999999877 677775433 222 56666655 445 4889999999999776554333222 2223222
Q ss_pred CCCCCCccchhchhhccccHHHHHHHc-----cCCEEEEeeeccCCc
Q 018045 82 GLFSFYEDGHQECCRVRKVRPLRRALK-----GLRAWITGQRKDQSP 123 (361)
Q Consensus 82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~-----~~~~~i~G~R~~Es~ 123 (361)
..|.. ...+ -|+--..+ +.+++++|.-+||-.
T Consensus 310 ~~p~~----~~~~------~ply~~~~~a~~~g~kVvLSGeGADElF 346 (542)
T COG0367 310 DTPGG----MAAS------IPLYLLSRKARAEGEKVVLSGEGADELF 346 (542)
T ss_pred CCCCc----ccch------hHHHHHHHhhhhcCcEEeecCccHHHHh
Confidence 22211 1111 12221111 447899999999965
No 308
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=93.32 E-value=0.21 Score=50.19 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=39.9
Q ss_pred CcEEEEecchHHHHHH-HHHHHcC----------CCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTG----------RPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~----------~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
.++.+.+|||-||+++ .++.+.. +++..+. .|.+ .|| ..+++.+++.+|.+.+.+...
T Consensus 226 vpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~D-~~~Ar~vA~~lg~~h~ev~~~ 295 (578)
T PLN02549 226 VPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFC--VGLEGSPD-LKAAREVADYLGTVHHEFHFT 295 (578)
T ss_pred CceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEe--cCCCCCCH-HHHHHHHHHHhCCCCeEEEEC
Confidence 4689999999999877 6776641 2333333 3433 454 568999999999987765443
No 309
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=93.18 E-value=0.51 Score=47.75 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=63.5
Q ss_pred CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCC----CCcHHHHHHHHHHHHHhCCcEEEEcCChHH----HHHHHH
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTG----RLNPETYRFFDEVEKHFGIRIEYMFPDAVE----VQALVR 79 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg----~~~pet~~~v~~~~~~~g~~i~~~~p~~~~----~~~~~~ 79 (361)
.++.+.+|||-||.++ .++.+. ..++..+.+... ..+.|. +|++.+++++|.+.+.+...... +...+.
T Consensus 261 ~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE~-~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~ 339 (589)
T TIGR03104 261 VPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEF-EYSDIIAERFHTRHHKIRIPNHRVLPALPEAVA 339 (589)
T ss_pred CceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCChH-HHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHHH
Confidence 4688999999999877 666664 334555444322 135554 78999999999988776654332 233333
Q ss_pred hcCCCCCCccchhchhhccccHHHHHHH-ccCCEEEEeeeccCCc
Q 018045 80 SKGLFSFYEDGHQECCRVRKVRPLRRAL-KGLRAWITGQRKDQSP 123 (361)
Q Consensus 80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~-~~~~~~i~G~R~~Es~ 123 (361)
..+.|... ...... ..+.+.. ++.+++++|.=+||-.
T Consensus 340 ~~~~P~~~--~~~~~~-----~~l~~~a~~~~kV~LsGeGaDElF 377 (589)
T TIGR03104 340 AMSEPMVS--HDCVAF-----YLLSEEVSKHVKVVQSGQGADEVF 377 (589)
T ss_pred HhCCCCCC--chHHHH-----HHHHHHHhCCCeEEeecCchHhcc
Confidence 33333211 111111 1123333 3678999999999975
No 310
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=92.43 E-value=0.58 Score=48.27 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=45.2
Q ss_pred CcEEEEecchHHHHHH-HHH-------HH-c--CCC----------------------------ceEEEccCCCCcHHHH
Q 018045 10 NDIAIAFSGAEDVALI-EYA-------HL-T--GRP----------------------------FRVFSLDTGRLNPETY 50 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~-------~~-~--~~~----------------------------i~v~~~dtg~~~pet~ 50 (361)
.+++|+.|||-||++. .|+ .+ . +.. +..++.-+-.--++|+
T Consensus 349 ~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp~~~ss~~t~ 428 (700)
T PLN02339 349 SGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSENSSEETR 428 (700)
T ss_pred CeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECCCCCCCHHHH
Confidence 6899999999999864 442 12 2 211 3556677667779999
Q ss_pred HHHHHHHHHhCCcEEEEcC
Q 018045 51 RFFDEVEKHFGIRIEYMFP 69 (361)
Q Consensus 51 ~~v~~~~~~~g~~i~~~~p 69 (361)
+-++.+++.+|+....+.-
T Consensus 429 ~~A~~la~~lG~~~~~i~I 447 (700)
T PLN02339 429 SRAKQLADEIGSSHLDVKI 447 (700)
T ss_pred HHHHHHHHHHCCCEEEEeC
Confidence 9999999999999877643
No 311
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=92.37 E-value=0.37 Score=48.61 Aligned_cols=107 Identities=12% Similarity=0.183 Sum_probs=61.5
Q ss_pred CcEEEEecchHHHHHH-HHHHHcC------------CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH----
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTG------------RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV---- 72 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~------------~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~---- 72 (361)
.++.+.+|||-||.++ .++.+.. .++..+.+... ..|| ..+++.+++.+|.+.+.+.....
T Consensus 238 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~Ar~vA~~lg~~h~~i~~~~~e~~~ 315 (586)
T PTZ00077 238 VPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE-GSPD-LKAARKVAEYLGTEHHEFTFTVEEGID 315 (586)
T ss_pred CceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC-CCch-HHHHHHHHHHhCCcCcEEEECHHHHHH
Confidence 4688999999999877 6776642 24554544332 2455 57899999999998876654332
Q ss_pred HHHHHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCc
Q 018045 73 EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 123 (361)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~ 123 (361)
.+...+.....+... ..+.... +.-+.+.++ +.+++++|.-+||-.
T Consensus 316 ~l~~~i~~le~~~~~--~~~~~~p---~yll~r~a~~~gvkVvLsGeGaDElF 363 (586)
T PTZ00077 316 ALPDVIYHTETYDVT--TIRASTP---MYLLSRRIKALGIKMVLSGEGSDELF 363 (586)
T ss_pred HHHHHHHHhcCCCCC--CcchHHH---HHHHHHHHHhcCCeEEEecCchhhhc
Confidence 222222222221111 0010111 112333333 468999999999964
No 312
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=91.88 E-value=0.61 Score=37.94 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=36.3
Q ss_pred EEEEECC------CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCC----CCCCeEEE
Q 018045 273 LVVLYAP------WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQL----GSFPTILF 332 (361)
Q Consensus 273 lv~F~a~------wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v----~~~Pt~~~ 332 (361)
++.|+++ +|+.|+.++..|+.+ +|.|-.+|++.+ .+ |. +.++- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~V~~~e~DVs~~-~~~~~EL~-~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------RVKFDERDVSMD-SGFREELR-ELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHH-HHhCCCCCCCCCCEEEE
Confidence 4567777 899999999888764 588888999876 43 33 33343 57887664
No 313
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=91.73 E-value=0.23 Score=42.95 Aligned_cols=40 Identities=28% Similarity=0.629 Sum_probs=32.4
Q ss_pred CCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEE
Q 018045 269 QEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFR 309 (361)
Q Consensus 269 ~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd 309 (361)
+++.||.|+.-.||+|..+.+.+ ..+.+.+.+ ++.|..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEec
Confidence 46779999999999999999976 788888876 56665544
No 314
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=91.61 E-value=2.9 Score=31.93 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=60.3
Q ss_pred eec-CcccHHHHHhhcCCC-CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045 252 VTL-NRTGMENLARLDHRQ-EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329 (361)
Q Consensus 252 ~~l-~~~~f~~~~~~~~~~-~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt 329 (361)
.++ +.+++++++. .. +.++|-|+..--+ .+...+.++|+.+.+ .+.|+... + ..+. .++++. .|.
T Consensus 3 ~~i~s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~---~-~~~~-~~~~~~-~~~ 69 (107)
T cd03068 3 KQLQTLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTF---D-SEIF-KSLKVS-PGQ 69 (107)
T ss_pred eEcCCHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEC---h-HHHH-HhcCCC-CCc
Confidence 444 3455666654 44 6777777765433 466789999999976 68885432 3 4667 677775 577
Q ss_pred EEEEeC------CCCCeeecCCCCCCHHH-HHHHHHH
Q 018045 330 ILFFPK------HSSKPIKYPSERRDVDS-LMAFVDA 359 (361)
Q Consensus 330 ~~~~~~------g~~~~~~~~~~~~~~~~-l~~~i~~ 359 (361)
+++|.. =......|.+...+.++ |..||+.
T Consensus 70 vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 70 LVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred eEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 888732 22335677763245545 9999974
No 315
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=90.77 E-value=0.74 Score=46.15 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=61.9
Q ss_pred CcEEEEecchHHHHHH-HHHHHcC--------------CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH-
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTG--------------RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE- 73 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~--------------~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~- 73 (361)
.++.+.+|||=||+++ .++.+.. +++..+.+.... .|| ..+++.+++.+|.+.+.+......
T Consensus 228 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~-~~D-~~~A~~vA~~lg~~h~~v~~t~~e~ 305 (554)
T PRK09431 228 VPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG-SPD-LKAAREVADHLGTVHHEIHFTVQEG 305 (554)
T ss_pred CceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCCC-CCh-HHHHHHHHHHhCCccEEEEeCHHHH
Confidence 4688999999999877 6776642 235545444332 454 588999999999988776554322
Q ss_pred ---HHHHHHhcCCCCCCccchhchhhccccHHHHHHH--ccCCEEEEeeeccCCc
Q 018045 74 ---VQALVRSKGLFSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSP 123 (361)
Q Consensus 74 ---~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~--~~~~~~i~G~R~~Es~ 123 (361)
+.+.+.......+. ..+.... +.-+.+.+ .+.+++++|.=+||-.
T Consensus 306 ~~~l~~vi~~le~~dp~--~~~~~~p---~yll~~~~~~~gvkvvLsGeGaDElF 355 (554)
T PRK09431 306 LDALRDVIYHLETYDVT--TIRASTP---MYLMARKIKAMGIKMVLSGEGADELF 355 (554)
T ss_pred HHHHHHHHHHHhccCCc--cchhHHH---HHHHHHHHHHcCCEEEEecCchhhhh
Confidence 22222222211010 0010110 11123332 3678999999999964
No 316
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=89.73 E-value=1.5 Score=30.79 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=49.7
Q ss_pred EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 334 (361)
Q Consensus 272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~ 334 (361)
.+..|-+..-+.++.....+.++-+.+-+..+.+--||+.++ ++++ ..++|-.+||++=..
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLvk~~ 63 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ-PQLA-EEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC-HhHH-hhCCEEEechhhhcC
Confidence 455566666688888888888888887554788999999999 9999 999999999977543
No 317
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=88.95 E-value=0.87 Score=43.29 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=32.9
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCC---CceEEEccCCCCcHH------------HHHHHHHHHHHhCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGR---PFRVFSLDTGRLNPE------------TYRFFDEVEKHFGI 62 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~---~i~v~~~dtg~~~pe------------t~~~v~~~~~~~g~ 62 (361)
.+|+|.||||-||+++ +|+...-+ +|.++ ++-++.|| ...-++++...|+-
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLI--NVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P~ 317 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLI--NVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYPK 317 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCCCCceeEE--EeeccCCCcccccCCccHHHHHHHHHHHHHhCCc
Confidence 5899999999999888 78888433 34444 33332223 23456777777754
No 318
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=88.83 E-value=3.6 Score=38.89 Aligned_cols=99 Identities=13% Similarity=0.173 Sum_probs=64.7
Q ss_pred cHHHHHhhcCCCCcEEEEEECCCChhHHhhHH-HH-HH-HHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEEEE
Q 018045 258 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEG-SY-VE-LADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFF 333 (361)
Q Consensus 258 ~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p-~~-~~-la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~~~ 333 (361)
++-+.+...+.++.+||.|-+---...+.|.- .| .. +++.+.. .+.-++|+..... ..+. .-|.+..+|+++++
T Consensus 7 nipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~-~fVaIkiqags~aa~qFs-~IYp~v~vPs~ffI 84 (506)
T KOG2507|consen 7 NIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK-YFVAIKIQAGSVAATQFS-AIYPYVSVPSIFFI 84 (506)
T ss_pred chHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc-ceEEEEeccCchhhhhhh-hhcccccccceeee
Confidence 44555555667888888888877676766662 22 22 2333332 4555566544321 3455 67889999999999
Q ss_pred -eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 334 -PKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 334 -~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
..|. ++....|..++++|..-|+++
T Consensus 85 g~sGt--pLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 85 GFSGT--PLEVITGFVTADELASSIEKV 110 (506)
T ss_pred cCCCc--eeEEeeccccHHHHHHHHHHH
Confidence 4555 666666678899999988875
No 319
>PHA03075 glutaredoxin-like protein; Provisional
Probab=86.79 E-value=1.1 Score=34.31 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=25.6
Q ss_pred CcEEEEEECCCChhHHhhHHHHHHHHHHh
Q 018045 270 EPWLVVLYAPWCQFCQAMEGSYVELADKL 298 (361)
Q Consensus 270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~ 298 (361)
|.++|.|..|.|+-|......+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999999997777665
No 320
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=86.73 E-value=3 Score=28.88 Aligned_cols=53 Identities=9% Similarity=0.200 Sum_probs=34.8
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEE
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~ 332 (361)
+.|+.++|+.|++.+-.+.+.. -.+.+..+|......++. +......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g-----l~~e~~~v~~~~~~~~~~-~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG-----ITVELREVELKNKPAEML-AASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC-----CCcEEEEeCCCCCCHHHH-HHCCCCCCCEEEE
Confidence 4678999999999876665442 134556666543324565 5556778999853
No 321
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=86.63 E-value=0.78 Score=27.81 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=19.6
Q ss_pred cCcHHHHHHHHHhCCCCCCccc
Q 018045 156 NVKGNDIWNFLRTMDVPINSLH 177 (361)
Q Consensus 156 ~W~~~dv~~yi~~~~lp~~~lY 177 (361)
.|+++|+..|+..+||++.+-.
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCC
Confidence 5999999999999999987643
No 322
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=85.46 E-value=14 Score=28.08 Aligned_cols=107 Identities=10% Similarity=0.003 Sum_probs=74.7
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHH---HcCCCC-C
Q 018045 252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAK---QKLQLG-S 326 (361)
Q Consensus 252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~---~~~~v~-~ 326 (361)
..|+.+++-++=. .+.++..++.|--+--+.=.+|.+.+.++|+.+.. .++.|+-||=+.. +-+.. +.|+|. .
T Consensus 4 rkl~~~~m~e~we-dd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F-Pllv~yWektF~IDl~ 81 (120)
T cd03074 4 RKLKPENMFETWE-DDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF-PLLVPYWEKTFGIDLF 81 (120)
T ss_pred hhccHHHHHHhhh-cccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC-chhhHHHHhhcCcccC
Confidence 4456666544433 33468889999999999999999999999999987 4899999999988 65441 345553 2
Q ss_pred CCeEEEEeC--CCCCeeecCC--CCCCHHHHHHHHHHh
Q 018045 327 FPTILFFPK--HSSKPIKYPS--ERRDVDSLMAFVDAL 360 (361)
Q Consensus 327 ~Pt~~~~~~--g~~~~~~~~~--~~~~~~~l~~~i~~~ 360 (361)
-|.+=+.+- ....-....+ ...++++|.+||+.+
T Consensus 82 ~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 82 RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred CCceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 488777742 2222333333 136899999999875
No 323
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=84.61 E-value=10 Score=26.45 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=41.7
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHH
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD 351 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~ 351 (361)
+..|+.+.|+.|+..+-.+.+. ++.+-.++++... .++. .-....+|+++.=..|.. ... .+..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-------gi~y~~~~~~~~~~~~~~--~~~~~~vP~l~~~~~~~~-~~l-----~eS~ 66 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-------GIPYEVVEVNPVSRKEIK--WSSYKKVPILRVESGGDG-QQL-----VDSS 66 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-------CCceEEEECCchhHHHHH--HhCCCccCEEEECCCCCc-cEE-----EcHH
Confidence 4578889999999988655544 2444444444321 2333 335567998875432221 122 2346
Q ss_pred HHHHHHHHh
Q 018045 352 SLMAFVDAL 360 (361)
Q Consensus 352 ~l~~~i~~~ 360 (361)
.+.++|++.
T Consensus 67 ~I~~yL~~~ 75 (77)
T cd03040 67 VIISTLKTY 75 (77)
T ss_pred HHHHHHHHH
Confidence 777777653
No 324
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=84.22 E-value=8.6 Score=27.06 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=42.0
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD 349 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~ 349 (361)
+..|+.++|+.|++.+-.+.+. ++.+-.++++..+ .++. +.-....+|+++.- +|. ... ..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~v~~~~~~~~~~~-~~~p~~~vP~l~~~-~~~--~~l-----~e 65 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-------ELDVILYPCPKGSPKRDKFL-EKGGKVQVPYLVDP-NTG--VQM-----FE 65 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-------CCcEEEEECCCChHHHHHHH-HhCCCCcccEEEeC-CCC--eEE-----Ec
Confidence 4567788999999877666554 3445445655431 2343 33345679987542 222 222 23
Q ss_pred HHHHHHHHHH
Q 018045 350 VDSLMAFVDA 359 (361)
Q Consensus 350 ~~~l~~~i~~ 359 (361)
...|.++|++
T Consensus 66 s~~I~~yL~~ 75 (77)
T cd03041 66 SADIVKYLFK 75 (77)
T ss_pred HHHHHHHHHH
Confidence 5778888765
No 325
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=84.20 E-value=3.8 Score=29.93 Aligned_cols=65 Identities=8% Similarity=-0.094 Sum_probs=52.5
Q ss_pred CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 336 (361)
Q Consensus 270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g 336 (361)
..++=.|.|..-+.++.....+.++-+.+-...+.+--||+.++ ++++ ..++|-.+||++=....
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q-P~lA-E~~~IvATPtLIK~~P~ 67 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN-PQLA-EEDKILATPTLSKILPP 67 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCEEEecHHhhcCCC
Confidence 45666777888888999888888887765443688888999999 9999 99999999997766444
No 326
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=83.94 E-value=7.7 Score=34.35 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=57.8
Q ss_pred CCCcEEEEEECCCChh-HHhhHHHHHHHHHHhcC-CCe----EEEEEEcCCCc-------------------------hH
Q 018045 268 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAG-NGV----KVGKFRADGDQ-------------------------KE 316 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~~~~-~~v----~~~~vd~~~~~-------------------------~~ 316 (361)
.++-+|++|.=+.||. |=.....+..+.+.++. .++ .|+.||=+.+. ..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 6899999999999874 66666566665555544 122 46666643331 35
Q ss_pred HHHHcCCCCCCC-------------eEEEE---eCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 317 YAKQKLQLGSFP-------------TILFF---PKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 317 l~~~~~~v~~~P-------------t~~~~---~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
+| ++|.|.--+ |+++| ++|+ .+.|-|..++++++.+-|.+
T Consensus 218 va-k~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~--Fvd~~GrN~~~~~~~~~I~~ 273 (280)
T KOG2792|consen 218 VA-KKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGE--FVDYYGRNYDADELADSILK 273 (280)
T ss_pred HH-HHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcc--eehhhcccCCHHHHHHHHHH
Confidence 67 677664222 34555 4455 88888888899998887653
No 327
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=83.46 E-value=17 Score=29.68 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=34.6
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG 312 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~ 312 (361)
.++.+||.=.|+-|+.--+. ..|+.|.+.|++.++.++.+=|+.
T Consensus 24 ~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQ 67 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQ 67 (162)
T ss_pred CCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccc
Confidence 68999999999999976643 367778888877778888777754
No 328
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=83.11 E-value=1.6 Score=33.11 Aligned_cols=78 Identities=10% Similarity=0.126 Sum_probs=43.1
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEEEeCCCCCeeecC----C
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYP----S 345 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~----~ 345 (361)
+..|+.++|+.|+.....+++. ++.|-.+|+.++. .++. +-.+-.+.+.--++..... ...-. .
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~~l~-~~~~~~~~~~~~li~~~~~-~~~~l~~~~~ 71 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLKEPPTKEELK-ELLAKLGLGVEDLFNTRGT-PYRKLGLADK 71 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-------CCCcEEEeeccCCCCHHHHH-HHHHhcCCCHHHHHhcCCc-hHHHcCCccc
Confidence 3578999999999988776653 4677777776531 2333 2223233333333332211 11110 1
Q ss_pred CCCCHHHHHHHHHH
Q 018045 346 ERRDVDSLMAFVDA 359 (361)
Q Consensus 346 ~~~~~~~l~~~i~~ 359 (361)
...+.+++.++|.+
T Consensus 72 ~~ls~~e~~~~l~~ 85 (105)
T cd02977 72 DELSDEEALELMAE 85 (105)
T ss_pred cCCCHHHHHHHHHh
Confidence 14677888887754
No 329
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=83.09 E-value=16 Score=27.21 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=48.2
Q ss_pred CCcE-EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045 269 QEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 347 (361)
Q Consensus 269 ~~~v-lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~ 347 (361)
.++| ++.|..+. ..|..+...++++++.-. .+.+-..+. . . ..|++.+..+|+...+.|.| -
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~-------~-~-----~~P~~~i~~~~~~~gIrF~G-i 80 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDND-------D-E-----RKPSFSINRPGEDTGIRFAG-I 80 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecC-------C-C-----CCCEEEEecCCCcccEEEEe-c
Confidence 4555 44555555 999999999998887653 355532111 1 1 47999999877433577776 4
Q ss_pred CCHHHHHHHHHHh
Q 018045 348 RDVDSLMAFVDAL 360 (361)
Q Consensus 348 ~~~~~l~~~i~~~ 360 (361)
-.=.++..||..+
T Consensus 81 P~GhEf~Slilai 93 (94)
T cd02974 81 PMGHEFTSLVLAL 93 (94)
T ss_pred CCchhHHHHHHHh
Confidence 4456777777654
No 330
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=82.15 E-value=24 Score=28.23 Aligned_cols=91 Identities=10% Similarity=0.124 Sum_probs=59.8
Q ss_pred CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc-h----------------HHHHHcCCCCC
Q 018045 267 HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-K----------------EYAKQKLQLGS 326 (361)
Q Consensus 267 ~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~-~----------------~l~~~~~~v~~ 326 (361)
.+.|+.+|+.++|--..+..+-... +.+.+-+++ ++.+-.-|+...+ . ... +.++...
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~-nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~-~~~~~~~ 96 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ-NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTI-RNIKTDQ 96 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc-CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHH-HhcCcCC
Confidence 3689999999998864444433332 555555665 7888888887651 1 133 5678999
Q ss_pred CCeEEEEeCCC--CCeeecCCCCCCHHHHHHHHHH
Q 018045 327 FPTILFFPKHS--SKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 327 ~Pt~~~~~~g~--~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
+|.+.++-... ...+....|..++++|.+-|..
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~ 131 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIE 131 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHH
Confidence 99998884322 1234444458899999887754
No 331
>PRK09301 circadian clock protein KaiB; Provisional
Probab=81.69 E-value=9.1 Score=28.90 Aligned_cols=67 Identities=9% Similarity=-0.052 Sum_probs=54.7
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 336 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g 336 (361)
+...++=.|.|..-+..+.....+.++-+.+-...+.+--||+.++ +.++ ..++|-.+||++=.-..
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q-PelA-E~~~IvATPTLIK~~P~ 70 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN-PQLA-EEDKILATPTLAKILPP 70 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCeEEecHHhhcCCC
Confidence 3466777888888899999988888887765443688888999999 9999 99999999997765443
No 332
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.04 E-value=9.9 Score=37.85 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=53.1
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 347 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~ 347 (361)
-.++|-+.++.+-|..|..+...++++++.-. ++.+.. ... . ...|++.+..+|+..-+.|.| -
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~---~~~------~----~~~p~~~~~~~~~~~~i~f~g-~ 80 (517)
T PRK15317 17 LERPIELVASLDDSEKSAELKELLEEIASLSD--KITVEE---DSL------D----VRKPSFSITRPGEDTGVRFAG-I 80 (517)
T ss_pred CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEE---ccC------C----CCCCEEEEEcCCccceEEEEe-c
Confidence 46677666666689999999999999987753 466532 111 1 247999999877655677776 4
Q ss_pred CCHHHHHHHHHHh
Q 018045 348 RDVDSLMAFVDAL 360 (361)
Q Consensus 348 ~~~~~l~~~i~~~ 360 (361)
-.-.+|..||..+
T Consensus 81 P~g~Ef~s~i~~i 93 (517)
T PRK15317 81 PMGHEFTSLVLAL 93 (517)
T ss_pred CccHHHHHHHHHH
Confidence 4557777777654
No 333
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=78.74 E-value=12 Score=37.17 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 347 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~ 347 (361)
-.++|-+.++.+-|..|..+...++++++.-. ++.+..-+.+ ....|++.+..+|+..-+.|.| -
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--ki~~~~~~~~------------~~~~p~~~~~~~~~~~~i~f~g-~ 81 (515)
T TIGR03140 17 LENPVTLVLSAGSHEKSKELLELLDEIASLSD--KISLTQNTAD------------TLRKPSFTILRDGADTGIRFAG-I 81 (515)
T ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHhCC--CeEEEEecCC------------cCCCCeEEEecCCcccceEEEe-c
Confidence 45666665555579999999999999987753 4666432211 1346999998777644577776 4
Q ss_pred CCHHHHHHHHHHh
Q 018045 348 RDVDSLMAFVDAL 360 (361)
Q Consensus 348 ~~~~~l~~~i~~~ 360 (361)
-.-.+|..||..+
T Consensus 82 P~g~Ef~s~i~~i 94 (515)
T TIGR03140 82 PGGHEFTSLVLAI 94 (515)
T ss_pred CCcHHHHHHHHHH
Confidence 4556777777653
No 334
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=77.12 E-value=18 Score=27.95 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=42.5
Q ss_pred CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045 255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 334 (361)
Q Consensus 255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~ 334 (361)
.++.+.+++......+.++|.=.-+.- .+.+....+.+...... ....|.+ + +.+. ++|+|+.+|++++-+
T Consensus 9 P~~~L~~l~~~a~~~~~~~V~RG~~~g----~~~~t~~~~~~l~~~~~-~~~~v~I--d-P~~F-~~y~I~~VPa~V~~~ 79 (113)
T PF09673_consen 9 PDASLRNLLKQAERAGVVVVFRGFPDG----SFKPTAKAIQELLRKDD-PCPGVQI--D-PRLF-RQYNITAVPAFVVVK 79 (113)
T ss_pred CHHHHHHHHHHHHhCCcEEEEECCCCC----CHHHHHHHHHHHhhccC-CCcceeE--C-hhHH-hhCCceEcCEEEEEc
Confidence 345555555444344444444333321 56666666666655411 1133333 3 8888 999999999999998
Q ss_pred C
Q 018045 335 K 335 (361)
Q Consensus 335 ~ 335 (361)
+
T Consensus 80 ~ 80 (113)
T PF09673_consen 80 D 80 (113)
T ss_pred C
Confidence 7
No 335
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.51 E-value=11 Score=35.02 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=49.5
Q ss_pred hhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCcee-------cCCCCcCCcCCCCCeEEEeeCccCcHHHHHH
Q 018045 94 CCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 164 (361)
Q Consensus 94 cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~ 164 (361)
--..+|+.-++++.. |++.++.|.-.++- +.+....+.. ++..... ....+.+.-++||-|....||..
T Consensus 179 Ll~~lk~kll~~vA~~~g~~~i~~g~~~t~l-a~~vlt~v~~GRG~sis~~v~~~d-~r~~~d~~llrPLrDl~~~Ei~~ 256 (396)
T KOG2594|consen 179 LLLHLKMKLLQKVAAENGYNRIVLGDSTTDL-ASHVLTAVVKGRGGSISTDVQVVD-KRPKGDVKLLRPLRDLLSLEITS 256 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCchhHH-HHHHHHHHHhccCccceehhhhhc-cccCCCceeehhHHHHHHHHHHH
Confidence 456677777887776 67788888776664 2332211111 0000000 00123467789999999999999
Q ss_pred HHHhCCCCC
Q 018045 165 FLRTMDVPI 173 (361)
Q Consensus 165 yi~~~~lp~ 173 (361)
|+...|+++
T Consensus 257 y~~l~~l~~ 265 (396)
T KOG2594|consen 257 YCLLDGLAY 265 (396)
T ss_pred HHHhhcCCc
Confidence 999999987
No 336
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=76.04 E-value=2.6 Score=32.06 Aligned_cols=25 Identities=4% Similarity=0.231 Sum_probs=23.4
Q ss_pred EEeeCccCcHHHHHHHHHhCCCCCC
Q 018045 150 KWNPVANVKGNDIWNFLRTMDVPIN 174 (361)
Q Consensus 150 ~~~Pi~~W~~~dv~~yi~~~~lp~~ 174 (361)
+++||+.-++.||-.|...+|||+.
T Consensus 3 rIRPL~~v~E~ei~~ya~~~~lp~~ 27 (104)
T TIGR00269 3 RIKPLRYIPEKEVVLYAFLNELKVH 27 (104)
T ss_pred cccccccCCHHHHHHHHHHcCCCcC
Confidence 7899999999999999999999873
No 337
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=75.91 E-value=4 Score=31.34 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=34.2
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEEEeC
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPK 335 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~~~~ 335 (361)
..|+.++|+.|+.....|++- ++.|-.+|+.++. .++. +-++..+.|..-++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~el~-~~~~~~~~~~~~l~~~ 58 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIVEEPPSKEELK-KWLEKSGLPLKKFFNT 58 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCceEEecccCCcccHHHHH-HHHHHcCCCHHHHHhc
Confidence 578899999999988777652 5777778876552 2222 2223334565555543
No 338
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=75.03 E-value=5.8 Score=33.30 Aligned_cols=31 Identities=16% Similarity=0.513 Sum_probs=24.2
Q ss_pred EEECCCChhHHhhHHHHHHHHHHhcCCCeEEE
Q 018045 275 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 306 (361)
Q Consensus 275 ~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~ 306 (361)
+|.-|.|+.|-.++|.+.++...+++ .+.+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~ 32 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFR 32 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEE
Confidence 68999999999999999999999987 44443
No 339
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=74.54 E-value=5.1 Score=31.85 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=25.3
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 313 (361)
+..|+.++|+.|+.....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCC
Confidence 5678899999999987665543 477777777554
No 340
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=74.24 E-value=13 Score=33.75 Aligned_cols=89 Identities=9% Similarity=0.128 Sum_probs=59.1
Q ss_pred CCCCcEEEEEECC-----CChhHHhhHHHHHHHHHHhcC-----CCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045 267 HRQEPWLVVLYAP-----WCQFCQAMEGSYVELADKLAG-----NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 336 (361)
Q Consensus 267 ~~~~~vlv~F~a~-----wC~~C~~~~p~~~~la~~~~~-----~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g 336 (361)
.++|.|.+..... ...+-+++..+.+++++.+.+ ++++|+.+|...- ..- -.+.--+.|++++|+..
T Consensus 248 ~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~-~nq--ilM~als~P~l~i~Nts 324 (468)
T KOG4277|consen 248 ASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDL-ANQ--ILMAALSEPHLFIFNTS 324 (468)
T ss_pred cCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHH-HHH--HHHHhhcCCeEEEEecC
Confidence 3677777666543 356778899999999998875 3689998886543 111 12334578999999765
Q ss_pred CCCeeec---CCCCCCHHHHHHHHHH
Q 018045 337 SSKPIKY---PSERRDVDSLMAFVDA 359 (361)
Q Consensus 337 ~~~~~~~---~~~~~~~~~l~~~i~~ 359 (361)
.. .... .....+.+++.+||+.
T Consensus 325 nq-eYfLse~d~qikniedilqFien 349 (468)
T KOG4277|consen 325 NQ-EYFLSEDDPQIKNIEDILQFIEN 349 (468)
T ss_pred ch-heeeccCChhhhhHHHHHHHHhc
Confidence 53 1111 1124678899999975
No 341
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=73.99 E-value=7.7 Score=26.66 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=41.3
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHH
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 353 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l 353 (361)
..|+.++|+.|+...-.+++..- .+....+|.....+++. +......+|++. .+|. .. .....|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi-----~~~~~~v~~~~~~~~~~-~~~p~~~vP~l~--~~~~---~l-----~es~aI 65 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV-----SVEIIDVDPDNPPEDLA-ELNPYGTVPTLV--DRDL---VL-----YESRII 65 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC-----ccEEEEcCCCCCCHHHH-hhCCCCCCCEEE--ECCE---EE-----EcHHHH
Confidence 56788999999998776654422 23444455443324555 455667899774 2332 21 234677
Q ss_pred HHHHHH
Q 018045 354 MAFVDA 359 (361)
Q Consensus 354 ~~~i~~ 359 (361)
.++|.+
T Consensus 66 ~~yL~~ 71 (73)
T cd03059 66 MEYLDE 71 (73)
T ss_pred HHHHHh
Confidence 777754
No 342
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=73.77 E-value=22 Score=24.75 Aligned_cols=70 Identities=11% Similarity=0.219 Sum_probs=44.4
Q ss_pred EEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHH
Q 018045 275 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLM 354 (361)
Q Consensus 275 ~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~ 354 (361)
+|+.++|+.|++..=.++.. +-.+.+..++.......+. +...-..+|++. .+|. .. .+...|.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-----~i~~~~~~v~~~~~~~~~~-~~~p~~~vPvL~--~~g~---~l-----~dS~~I~ 64 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-----GIPYELVPVDPEEKRPEFL-KLNPKGKVPVLV--DDGE---VL-----TDSAAII 64 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-----TEEEEEEEEBTTSTSHHHH-HHSTTSBSSEEE--ETTE---EE-----ESHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHc-----CCeEEEeccCcccchhHHH-hhcccccceEEE--ECCE---EE-----eCHHHHH
Confidence 47789999999987655543 2124455555544325666 666778899997 4454 22 2457788
Q ss_pred HHHHHh
Q 018045 355 AFVDAL 360 (361)
Q Consensus 355 ~~i~~~ 360 (361)
++|++.
T Consensus 65 ~yL~~~ 70 (75)
T PF13417_consen 65 EYLEER 70 (75)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887753
No 343
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=73.75 E-value=6.1 Score=30.61 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=26.3
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 313 (361)
..|+.++|+.|++....+++- ++.|-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-------GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCceEEEecCCC
Confidence 468899999999998777762 577888888665
No 344
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=73.51 E-value=4.9 Score=30.56 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=25.3
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 313 (361)
+..|+.|+|+.|++....|++- ++.|-.+|..++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccC
Confidence 3578999999999988766543 466777777654
No 345
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.79 E-value=6.9 Score=27.54 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=35.3
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-------------h--HHHHHcCCCCCCCeEEEEeCCC
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-------------K--EYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-------------~--~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
+.|+|..||.|..+...++++ ++.+-.|++...- + +-. +..+--++|.+++= +|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~v-k~~gyiGIPall~~-d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-------NVDYDFVEITESMANLKRFLHLRDSRPEFDEV-KSNGYIGIPALLTD-DGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-------CCCceeeehhhhhhhHHHHHhhhccchhHHhh-hhcCcccceEEEeC-CCc
Confidence 789999999998877777665 3555556654431 1 112 34566688987654 444
No 346
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=72.73 E-value=6.9 Score=26.85 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=34.1
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC---CchHHHHHcCCCCCCCeEEE
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~---~~~~l~~~~~~v~~~Pt~~~ 332 (361)
..|+.++|+.|+..+-.+....- .+....++... ...++. +......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l-----~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI-----DVPLVTVDLAAGEQRSPEFL-AKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC-----CceEEEeecccCccCCHHHH-hhCCCCCCCEEEe
Confidence 46788999999998877766522 24445555422 114555 5555678999865
No 347
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=72.63 E-value=11 Score=31.28 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=33.3
Q ss_pred eEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHH
Q 018045 36 RVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALV 78 (361)
Q Consensus 36 ~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~ 78 (361)
.++++|||.. -++-.+.++++++.++++++++.-+...++.++
T Consensus 120 ~~~~Idtg~~~~~~~~~~~~~~a~~~~l~~~~~~g~l~~l~~ll 163 (166)
T PF07796_consen 120 RVVLIDTGVYDEEDFEEKVREFAEFLGLPIEEIPGDLDLLEKLL 163 (166)
T ss_pred eEEEEecccccchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHH
Confidence 5899999964 444588999999999999998866655555443
No 348
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=72.05 E-value=17 Score=23.96 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=32.6
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch-HHHHHcCCCCCCCeEEE
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK-EYAKQKLQLGSFPTILF 332 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~-~l~~~~~~v~~~Pt~~~ 332 (361)
..|+.++|+.|+...-.++...- .+....++...... ++. +...-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i-----~~~~~~~~~~~~~~~~~~-~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL-----PYELVPVDLGEGEQEEFL-ALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-----CcEEEEeCCCCCCCHHHH-hcCCCCCCCEEEE
Confidence 46788999999988877666521 23444444433211 244 4566778998764
No 349
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.86 E-value=8.1 Score=33.71 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=30.9
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
...+ ++++|+++|+++| +++ +...| ..+.+.+..-|+++
T Consensus 174 ~~~A-~e~gI~gVP~fv~--d~~---~~V~G-aq~~~v~~~al~~~ 212 (225)
T COG2761 174 EAAA-QEMGIRGVPTFVF--DGK---YAVSG-AQPYDVLEDALRQL 212 (225)
T ss_pred HHHH-HHCCCccCceEEE--cCc---EeecC-CCCHHHHHHHHHHH
Confidence 4466 7999999999999 444 66666 68899999888765
No 350
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=69.54 E-value=5.1 Score=32.57 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=27.9
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
...+ ++++|.++||+++ +|+ .+ .+ ..+.++|.+.|++
T Consensus 126 ~~~~-~~~~i~~tPt~~i--nG~--~~--~~-~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 126 SQLA-RQLGITGTPTFFI--NGK--YV--VG-PYTIEELKELIDK 162 (162)
T ss_dssp HHHH-HHHT-SSSSEEEE--TTC--EE--ET-TTSHHHHHHHHHH
T ss_pred HHHH-HHcCCccccEEEE--CCE--Ee--CC-CCCHHHHHHHHcC
Confidence 3456 6889999999999 776 32 33 6899999999975
No 351
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=69.12 E-value=59 Score=27.29 Aligned_cols=95 Identities=16% Similarity=0.071 Sum_probs=55.1
Q ss_pred hHHHH-HHHHHHHcCCCceEEEccCCCCcHHHHH----HHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc-chh
Q 018045 19 AEDVA-LIEYAHLTGRPFRVFSLDTGRLNPETYR----FFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED-GHQ 92 (361)
Q Consensus 19 GKDS~-~l~l~~~~~~~i~v~~~dtg~~~pet~~----~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~-~~~ 92 (361)
|=||+ .+..++..+.++.++|-+...+..+-+. -++++++++|+++++-.-+...+...+... ..-|.. .+.
T Consensus 8 aPCs~~~~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~~~--e~epE~g~RC 85 (176)
T PF02677_consen 8 APCSTYPLERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVKGL--EDEPEGGKRC 85 (176)
T ss_pred ccccHHHHHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHhhC--ccCCccCchh
Confidence 44554 4456666688999999999987555443 457788888999876543334444433332 222221 233
Q ss_pred chhhccccHHHHHHHc--cCCEEEE
Q 018045 93 ECCRVRKVRPLRRALK--GLRAWIT 115 (361)
Q Consensus 93 ~cc~~~K~~pl~~~~~--~~~~~i~ 115 (361)
.-|..+.++-..++.+ |++.+-|
T Consensus 86 ~~Cy~~RL~~tA~~A~e~gfd~FtT 110 (176)
T PF02677_consen 86 RVCYDLRLEKTAQYAKELGFDYFTT 110 (176)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 3366666655555554 5554443
No 352
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=67.59 E-value=11 Score=29.14 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=25.6
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 313 (361)
+..|+.++|+.|+.....|++. ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCC
Confidence 4578899999999988777663 466777777554
No 353
>PRK12559 transcriptional regulator Spx; Provisional
Probab=67.29 E-value=9.8 Score=30.24 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=24.5
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 313 (361)
+..|+.++|+.|+.....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCeEEEEeeCC
Confidence 5688899999999987655543 466666676544
No 354
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=67.24 E-value=94 Score=27.83 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=44.6
Q ss_pred CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCC-hh-HHhhHHHHHHHHHHhcC---CCeEEEEEEcCCCchHHHHHc
Q 018045 247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWC-QF-CQAMEGSYVELADKLAG---NGVKVGKFRADGDQKEYAKQK 321 (361)
Q Consensus 247 ~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC-~~-C~~~~p~~~~la~~~~~---~~v~~~~vd~~~~~~~l~~~~ 321 (361)
.......|++.+-+-+-+ -+++|-|.+|.+-- +. =....+.+.++-+.|+. .++.+-.||-+.+ ++.. ++
T Consensus 5 T~~k~ysLS~~T~~~L~~---L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~-~~~~-~~ 79 (271)
T PF09822_consen 5 TANKRYSLSDQTKKVLKS---LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN-PSEA-EE 79 (271)
T ss_pred CCCCCccCCHHHHHHHHh---CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC-hHHH-HH
Confidence 345677788776554443 45577777666541 11 23444455555555543 2799999998776 6555 44
Q ss_pred ----CCCCC
Q 018045 322 ----LQLGS 326 (361)
Q Consensus 322 ----~~v~~ 326 (361)
++|..
T Consensus 80 ~~~~~Gi~~ 88 (271)
T PF09822_consen 80 KAKEYGIQP 88 (271)
T ss_pred HHHhcCCCc
Confidence 77665
No 355
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=67.23 E-value=18 Score=24.67 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=37.2
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 352 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~ 352 (361)
..|+.++|++|++.+-.+... + +.|-.+.++... .... +...-..+|++.. .+|. . -.....
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~-----g--l~~~~~~~~~~~~~~~~-~~~~~~~vP~L~~-~~~~---~-----l~es~a 64 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLK-----N--IPVEQIILQNDDEATPI-RMIGAKQVPILEK-DDGS---F-----MAESLD 64 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHc-----C--CCeEEEECCCCchHHHH-HhcCCCccCEEEe-CCCe---E-----eehHHH
Confidence 367789999999887666554 2 333333333321 2223 3334457898743 3233 1 123466
Q ss_pred HHHHHH
Q 018045 353 LMAFVD 358 (361)
Q Consensus 353 l~~~i~ 358 (361)
|.+||+
T Consensus 65 I~~yL~ 70 (71)
T cd03037 65 IVAFID 70 (71)
T ss_pred HHHHHh
Confidence 777664
No 356
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.70 E-value=9.4 Score=32.41 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=32.0
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
..++ +++++.++||+++-.+|+..++.-.--..+.+.+..++.+
T Consensus 164 r~l~-~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~ 207 (212)
T COG3531 164 RRLM-QRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQ 207 (212)
T ss_pred HHHH-HHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHH
Confidence 5678 8999999999999999985333322114567888877764
No 357
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=66.61 E-value=28 Score=27.62 Aligned_cols=22 Identities=5% Similarity=0.294 Sum_probs=20.0
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCC
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
+.+. ++|+|+.+|++++.+++.
T Consensus 61 P~lF-~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 61 PQWF-KQFDITAVPAFVVVKDGL 82 (130)
T ss_pred hHHH-hhcCceEcCEEEEECCCC
Confidence 8889 999999999999998774
No 358
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=66.17 E-value=2.8 Score=30.35 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=44.5
Q ss_pred EECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEE
Q 018045 276 LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 276 F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~ 332 (361)
|-+..-+.++.....+..+.+.+-+..+.+--||+.++ ++++ ..++|-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ-PELA-EEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS-HSHH-TTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC-HhHH-hHCCeeecceEee
Confidence 44455566778888888888876555899999999999 9999 9999999999753
No 359
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=63.28 E-value=21 Score=29.85 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCCcEEEEEECCCC-hhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCC
Q 018045 268 RQEPWLVVLYAPWC-QFCQAMEGSYVELADKLAG--NGVKVGKFRADGD 313 (361)
Q Consensus 268 ~~~~vlv~F~a~wC-~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~ 313 (361)
.+++++|.|.-+.| ..|-.+...+.++.+.+.. .++.++.|.+|-.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 68999999999999 5788888888888887764 3688888887754
No 360
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=63.11 E-value=6.1 Score=33.15 Aligned_cols=19 Identities=26% Similarity=0.719 Sum_probs=15.7
Q ss_pred hHHHHHcCCCCCCCeEEEEe
Q 018045 315 KEYAKQKLQLGSFPTILFFP 334 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~ 334 (361)
..++ ++++|+++||++++.
T Consensus 137 ~~la-~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 137 QQLA-REMGITGFPTLVIFN 155 (176)
T ss_dssp HHHH-HHTT-SSSSEEEEE-
T ss_pred HHHH-HHcCCCCCCEEEEEe
Confidence 5788 899999999999997
No 361
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=61.57 E-value=20 Score=31.85 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=38.3
Q ss_pred CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeC
Q 018045 267 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 335 (361)
Q Consensus 267 ~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~ 335 (361)
..+|+.+++..+.|||.|...+=.+-.+-..|.. +.+...-.+.. + .-..+|++.|..-
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn--~~l~~~~S~~~------d--~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN--FSLEYHYSDPY------D--NYPNTPTLIFNNY 114 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC--eeeEEeecCcc------c--CCCCCCeEEEecC
Confidence 3799999999999999999887666666566654 43322222211 1 1246888887643
No 362
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=61.47 E-value=52 Score=23.74 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=34.2
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEE
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~ 332 (361)
+..|+.+.|+.|+...-.+... +-.+.+..+|......++. +......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~~~~~~~-~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKDKPDWFL-EKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCCCcHHHH-hhCCCCCcCEEEE
Confidence 5667788899999876655543 2134555566544313455 5555678999874
No 363
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.30 E-value=38 Score=31.78 Aligned_cols=94 Identities=10% Similarity=0.175 Sum_probs=64.2
Q ss_pred ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEE
Q 018045 253 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 253 ~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~ 332 (361)
.++.+-++++.. -.+..-+=-|++-.|..|-.....++-++-..+ ++.-..||-.-. ++-. ..-+|.++||+++
T Consensus 102 k~~q~vieqik~--i~g~~~FETy~SltC~nCPDVVQALN~msvlNp--~I~H~~IdGa~F-q~Ev-ear~IMaVPtvfl 175 (520)
T COG3634 102 KEDQDVIEQIKA--IDGDFHFETYFSLTCHNCPDVVQALNLMSVLNP--RIKHTAIDGALF-QDEV-EARNIMAVPTVFL 175 (520)
T ss_pred chhHHHHHHHHh--cCCceeEEEEEEeeccCChHHHHHHHHHHhcCC--CceeEEecchhh-HhHH-HhccceecceEEE
Confidence 344444444432 146677888889999999999888887776554 599999998777 5545 5568999999654
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045 333 FPKHSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 333 ~~~g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
+|+. |..|.++.++|..-|.
T Consensus 176 --nGe~----fg~GRmtleeilaki~ 195 (520)
T COG3634 176 --NGEE----FGQGRMTLEEILAKID 195 (520)
T ss_pred --cchh----hcccceeHHHHHHHhc
Confidence 6652 3334677777766553
No 364
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=60.78 E-value=80 Score=30.70 Aligned_cols=107 Identities=18% Similarity=0.280 Sum_probs=58.7
Q ss_pred HHHhHh-CCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC--hHHHHHHHH
Q 018045 3 RALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD--AVEVQALVR 79 (361)
Q Consensus 3 ~~~~~~-~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~--~~~~~~~~~ 79 (361)
+.+..+ +..-+++|++|.....+-|..-..+.=.|+..+ .-|..|..+.+....++|+++..+... ...+++.+.
T Consensus 68 ~~la~leg~~~av~~~SG~aAi~~al~all~~GD~VI~~~--~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~ 145 (432)
T PRK06702 68 QKLAELEGGVGAVATASGQAAIMLAVLNICSSGDHLLCSS--TVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAN 145 (432)
T ss_pred HHHHHHhCCCcEEEECCHHHHHHHHHHHhcCCCCEEEECC--CchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCC
Confidence 344433 445678999999986553322233333455433 457899999999889999999887652 233444432
Q ss_pred hcCCCCCCccchhchhhccccHHHHHHHccCC
Q 018045 80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLR 111 (361)
Q Consensus 80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~ 111 (361)
.+...-+.......+..+.-+..+.+..+...
T Consensus 146 ~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~g 177 (432)
T PRK06702 146 DKTKLVYAESLGNPAMNVLNFKEFSDAAKELE 177 (432)
T ss_pred cCCeEEEEEcCCCccccccCHHHHHHHHHHcC
Confidence 22111111222223334444555555555444
No 365
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=60.78 E-value=16 Score=31.94 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=39.3
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC---CCeEEEEEEcCCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG---NGVKVGKFRADGD 313 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~---~~v~~~~vd~~~~ 313 (361)
.+..+||-+-..+|..|..-...++.|..++.. .+|.|+.||-...
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 578889999999999999999999999988865 3799999996543
No 366
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=60.46 E-value=68 Score=27.29 Aligned_cols=92 Identities=18% Similarity=0.302 Sum_probs=58.8
Q ss_pred CCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHHH
Q 018045 269 QEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAKQ 320 (361)
Q Consensus 269 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~~ 320 (361)
++-+++.|| ++.-+-|-.....+.+..+.|+..++.++.+.+|.. +.+++ +
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs-~ 111 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIA-R 111 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHH-H
Confidence 455666666 556666777777888888888766788888877643 15677 7
Q ss_pred cCCCCC------CCeEEEE-eCCCCCe-eecCCC-CCCHHHHHHHHHHhC
Q 018045 321 KLQLGS------FPTILFF-PKHSSKP-IKYPSE-RRDVDSLMAFVDALR 361 (361)
Q Consensus 321 ~~~v~~------~Pt~~~~-~~g~~~~-~~~~~~-~~~~~~l~~~i~~~~ 361 (361)
.|++-. +=.++++ ++|..+. ..+... .++.+++...|+.++
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred HcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 888753 2234555 4444322 222221 489999999888764
No 367
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=60.13 E-value=14 Score=25.47 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=32.9
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---chHHHHHcCCCCCCCeEE
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTIL 331 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---~~~l~~~~~~v~~~Pt~~ 331 (361)
..|+.+.|+.|+..+-.+++..- .+....+|.... ..++. +......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi-----~~e~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL-----ELNLKEVNLMKGEHLKPEFL-KLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC-----CCEEEEecCccCCcCCHHHH-hhCcCCCCCEEE
Confidence 46889999999987766665421 344455554322 14555 555566899995
No 368
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=59.98 E-value=23 Score=28.29 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=45.9
Q ss_pred CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC----CCCeEEEEeCCCCCeeecCC
Q 018045 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG----SFPTILFFPKHSSKPIKYPS 345 (361)
Q Consensus 270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~----~~Pt~~~~~~g~~~~~~~~~ 345 (361)
..-++.|++|.|+-|..-...++. +++.+-.+..+.. ..+- ++++|. +==|.++ +|. |..
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~-------~Gf~Vk~~~~~d~-~alK-~~~gIp~e~~SCHT~VI--~Gy-----~vE 88 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA-------NGFEVKVVETDDF-LALK-RRLGIPYEMQSCHTAVI--NGY-----YVE 88 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh-------CCcEEEEeecCcH-HHHH-HhcCCChhhccccEEEE--cCE-----EEe
Confidence 345889999999999987666551 2577777777766 5665 777774 2233332 233 122
Q ss_pred CCCCHHHHHHHHH
Q 018045 346 ERRDVDSLMAFVD 358 (361)
Q Consensus 346 ~~~~~~~l~~~i~ 358 (361)
|-..++.+..+++
T Consensus 89 GHVPa~aI~~ll~ 101 (149)
T COG3019 89 GHVPAEAIARLLA 101 (149)
T ss_pred ccCCHHHHHHHHh
Confidence 2456677777765
No 369
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=58.64 E-value=17 Score=30.45 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.3
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
...+ .+++|.++||+++ +|+ ..+.| ....+.|.+.|+
T Consensus 157 ~~~a-~~~gv~GvP~~vv--~g~---~~~~G-~~~~~~l~~~l~ 193 (193)
T PF01323_consen 157 TAEA-RQLGVFGVPTFVV--NGK---YRFFG-ADRLDELEDALQ 193 (193)
T ss_dssp HHHH-HHTTCSSSSEEEE--TTT---EEEES-CSSHHHHHHHH-
T ss_pred HHHH-HHcCCcccCEEEE--CCE---EEEEC-CCCHHHHHHHhC
Confidence 4566 7899999999999 555 44555 577888887764
No 370
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=57.20 E-value=26 Score=26.84 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=53.3
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-------hHHHHHcCCCCCCCeEEEEeCCCCCe
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-------KEYAKQKLQLGSFPTILFFPKHSSKP 340 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-------~~l~~~~~~v~~~Pt~~~~~~g~~~~ 340 (361)
+++++||.=.|+-|+.-. ....|++|.++|+..++.++..=|.... .++. .-..-..-|++-+|..
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~-~~~~~~~~~~F~vf~k----- 92 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIK-EFCKEKFGVTFPVFEK----- 92 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHH-HHHCHCHT-SSEEBS------
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHH-HHHHhccCCcccceEE-----
Confidence 688999999999999988 6679999999998667999988886531 2222 1111123456666653
Q ss_pred eecCCCCCCHHHHHHHHH
Q 018045 341 IKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 341 ~~~~~~~~~~~~l~~~i~ 358 (361)
+...| .++.-|-+||+
T Consensus 93 i~VnG--~~ahPly~~LK 108 (108)
T PF00255_consen 93 IDVNG--PDAHPLYKYLK 108 (108)
T ss_dssp BBSSS--TTB-HHHHHHH
T ss_pred EEecC--CCCcHHHHHhC
Confidence 33454 44566666653
No 371
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=55.86 E-value=22 Score=28.23 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=24.2
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 313 (361)
+..|+.++|+.|+.....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEECCCC
Confidence 4578899999999977555432 467777776544
No 372
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.30 E-value=21 Score=29.87 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=25.2
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAG 300 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~ 300 (361)
|.+|+-+.||.|-...+.++++.+.++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6688899999999999999999999843
No 373
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=51.19 E-value=44 Score=29.86 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=33.2
Q ss_pred EEec-chHHHHHHHHHHHc-------CCCceEEEccCCCCcHHHHHHHHHHHHHhCC
Q 018045 14 IAFS-GAEDVALIEYAHLT-------GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI 62 (361)
Q Consensus 14 vs~S-GGKDS~~l~l~~~~-------~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~ 62 (361)
++-| -||-..+++|+... +.+-.++|+||...|+- +-+.++++++++
T Consensus 44 ~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~--~Rl~~i~~~~~~ 98 (256)
T PF08423_consen 44 VGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP--ERLQQIAERFGL 98 (256)
T ss_dssp EESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H--HHHHHHHHHTTS
T ss_pred EEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH--HHHHHHhhcccc
Confidence 4444 78999998887653 45678999999998875 334566777764
No 374
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=51.04 E-value=37 Score=23.77 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=35.8
Q ss_pred cEEEEecchHHH---HHH----HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH
Q 018045 11 DIAIAFSGAEDV---ALI----EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV 72 (361)
Q Consensus 11 ~i~vs~SGGKDS---~~l----~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~ 72 (361)
...|.++||-|- -++ +-+.+..+++.+++ .|. ..-....+++.++..|++++.+.|+..
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~~~~~lvh--Gga-~~GaD~iA~~wA~~~gv~~~~~~adW~ 68 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARHPDMVLVH--GGA-PKGADRIAARWARERGVPVIRFPADWQ 68 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhCCCEEEEE--CCC-CCCHHHHHHHHHHHCCCeeEEeCcChh
Confidence 345778888663 333 22223334444443 332 244566788899999999999888753
No 375
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=50.54 E-value=50 Score=25.19 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=38.0
Q ss_pred HHhHhCC--cEEEEe-c-ch-HHHHHHHHHHHc-CCCceEEEccCCC-------CcHHHHHHHHHHHHHhCCcEEE
Q 018045 4 ALEKFGN--DIAIAF-S-GA-EDVALIEYAHLT-GRPFRVFSLDTGR-------LNPETYRFFDEVEKHFGIRIEY 66 (361)
Q Consensus 4 ~~~~~~~--~i~vs~-S-GG-KDS~~l~l~~~~-~~~i~v~~~dtg~-------~~pet~~~v~~~~~~~g~~i~~ 66 (361)
++++|++ -=+|+| + || -+.-+++++.++ ...+.++|+-|-. .-|...++.+.+++++|++++.
T Consensus 29 ~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 29 AFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred ccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 4566753 346777 4 76 223333333332 3346677776653 3377777888888888998764
No 376
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=50.31 E-value=31 Score=28.81 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=30.6
Q ss_pred EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc
Q 018045 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA 310 (361)
Q Consensus 272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~ 310 (361)
.|..|+..-||.|-...+.+.++.+.+.+-.|.+.-+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 367899999999999999999999999442444444543
No 377
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=50.01 E-value=62 Score=23.91 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=28.7
Q ss_pred EECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHH
Q 018045 276 LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEY 317 (361)
Q Consensus 276 F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l 317 (361)
+|.+.+.-.++....=+.+...+...+|.|-.+|++.+ ++.
T Consensus 4 vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d-~~~ 44 (92)
T cd03030 4 VYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN-EEN 44 (92)
T ss_pred EEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC-HHH
Confidence 33344555777777777777777666899999999877 443
No 378
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=48.38 E-value=26 Score=27.86 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=25.9
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
..++ .+++|.++||+++ +|+ .+.| ..+.+.|.+.|
T Consensus 119 ~~~~-~~~gi~gtPt~~v--~g~----~~~G-~~~~~~l~~~i 153 (154)
T cd03023 119 RQLA-RALGITGTPAFII--GDT----VIPG-AVPADTLKEAI 153 (154)
T ss_pred HHHH-HHcCCCcCCeEEE--CCE----EecC-CCCHHHHHHHh
Confidence 4667 7899999999877 343 3455 67888888776
No 379
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=46.82 E-value=35 Score=27.76 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=56.8
Q ss_pred CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHh---CCcEEEEcCChHHHHHHHHhcCCCC
Q 018045 10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF---GIRIEYMFPDAVEVQALVRSKGLFS 85 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~---g~~i~~~~p~~~~~~~~~~~~~~~~ 85 (361)
.+++|+.|-|+....+ .++.. ..++.+|.-.+|++-+.+.++=+++.+.+ |.++..-.-..+..+.-+.+
T Consensus 29 k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sHalSg~eRsis~----- 102 (186)
T COG1751 29 KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSHALSGVERSISR----- 102 (186)
T ss_pred ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehhhhhcchhhhhh-----
Confidence 5799999988876644 44443 25677888889987776666655555544 77765543333333322221
Q ss_pred CCccchhchhhccccHHHHHHHc----cCCEEE-EeeeccCC
Q 018045 86 FYEDGHQECCRVRKVRPLRRALK----GLRAWI-TGQRKDQS 122 (361)
Q Consensus 86 ~~~~~~~~cc~~~K~~pl~~~~~----~~~~~i-~G~R~~Es 122 (361)
..-.+...+.+...++ |.++.+ .-+.+.|+
T Consensus 103 -------kfGG~~p~eiiAetLR~fg~G~KVcvEItiMAaDa 137 (186)
T COG1751 103 -------KFGGYSPLEIIAETLRMFGQGVKVCVEITIMAADA 137 (186)
T ss_pred -------hcCCcchHHHHHHHHHHhcCCcEEEEEEEEEeccC
Confidence 2223333444444444 555433 56677776
No 380
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=46.77 E-value=77 Score=27.33 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=33.2
Q ss_pred CCCcEEEEEECCCCh-hHHhhHHHHHHHHHHhc-C--CCeEEEEEEcCC
Q 018045 268 RQEPWLVVLYAPWCQ-FCQAMEGSYVELADKLA-G--NGVKVGKFRADG 312 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~-~C~~~~p~~~~la~~~~-~--~~v~~~~vd~~~ 312 (361)
.+++++|.|.=+.|+ -|-.+...+..+.+++. . .++.++.|-+|-
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP 114 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP 114 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC
Confidence 689999999988886 58888888888888877 3 355555554443
No 381
>PRK09028 cystathionine beta-lyase; Provisional
Probab=46.76 E-value=1.5e+02 Score=28.36 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=38.0
Q ss_pred EEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 12 IAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 12 i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
-++.++||..+..+-+..-..+.-.|+..|.. |+.+..+......++|+++..+.+.
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~--Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGDHLLMVDSC--YEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCC--cHHHHHHHHHhhhhcceEEEEECCC
Confidence 45688899987544211112232345655665 7999998888888899998877664
No 382
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=46.63 E-value=2e+02 Score=27.39 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=38.6
Q ss_pred hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 8 FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 8 ~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
++..-++.+|||..+..+-+..-..+.-.|+..+ ..|+.++...+.....+|+++..+...
T Consensus 74 ~g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 74 EGAEACVATASGMAAILAVVMALLQAGDHVVSSR--SLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred hCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcc--CcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 3433467889998876542222122222344433 357889998888888999998877554
No 383
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=46.42 E-value=1.4e+02 Score=23.15 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=45.6
Q ss_pred CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch-----------HHHHHcCCCCCC-CeEEEE-eCCCCCeeecCC
Q 018045 279 PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK-----------EYAKQKLQLGSF-PTILFF-PKHSSKPIKYPS 345 (361)
Q Consensus 279 ~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~-----------~l~~~~~~v~~~-Pt~~~~-~~g~~~~~~~~~ 345 (361)
+.-+.=+.....+.+....+...++.++.+--+.... .+. ++|++..- -+++++ ++|+. ...+.
T Consensus 20 ~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~~~~f~~vLiGKDG~v-K~r~~- 96 (118)
T PF13778_consen 20 ADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIPPGGFTVVLIGKDGGV-KLRWP- 96 (118)
T ss_pred CCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCCCCceEEEEEeCCCcE-EEecC-
Confidence 3444455555666664445554456666653222212 666 78886432 244444 77773 33344
Q ss_pred CCCCHHHHHHHHHHh
Q 018045 346 ERRDVDSLMAFVDAL 360 (361)
Q Consensus 346 ~~~~~~~l~~~i~~~ 360 (361)
...+.++|...|.++
T Consensus 97 ~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 97 EPIDPEELFDTIDAM 111 (118)
T ss_pred CCCCHHHHHHHHhCC
Confidence 478999999998764
No 384
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.30 E-value=37 Score=26.42 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=27.1
Q ss_pred HHHhHh--CCcEEEEecchHH----------HHHH-----HHHHHcCCCceEEEccCCC
Q 018045 3 RALEKF--GNDIAIAFSGAED----------VALI-----EYAHLTGRPFRVFSLDTGR 44 (361)
Q Consensus 3 ~~~~~~--~~~i~vs~SGGKD----------S~~l-----~l~~~~~~~i~v~~~dtg~ 44 (361)
+.++.. ++.+++.|+|+|| .+.. .-+.....++.+|+++-|.
T Consensus 17 ~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 17 ETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred HHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 444444 3679999999994 3322 2233356678888888884
No 385
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=46.10 E-value=76 Score=28.83 Aligned_cols=59 Identities=12% Similarity=-0.008 Sum_probs=40.6
Q ss_pred EEEEecchHHHHHHHHHHHcCCC-ceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH
Q 018045 12 IAIAFSGAEDVALIEYAHLTGRP-FRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV 72 (361)
Q Consensus 12 i~vs~SGGKDS~~l~l~~~~~~~-i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~ 72 (361)
|+=-+|.||-.+++|++.....+ -.++|+||..-|+.. ++..+....--++.+.+|...
T Consensus 65 iyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~--r~~~l~~~~~d~l~v~~~~~~ 124 (279)
T COG0468 65 IYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPE--RAKQLGVDLLDNLLVSQPDTG 124 (279)
T ss_pred EecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHH--HHHHHHHhhhcceeEecCCCH
Confidence 44458899999999887764333 388999999866653 445566653236777777653
No 386
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.91 E-value=68 Score=24.10 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=18.0
Q ss_pred cEEEEecchHHHHHH-----HHHHHcCCCceE
Q 018045 11 DIAIAFSGAEDVALI-----EYAHLTGRPFRV 37 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-----~l~~~~~~~i~v 37 (361)
+|++.++||-.|+++ .++.+.+.++.+
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i 33 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEA 33 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 588889988777766 345555665543
No 387
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=45.79 E-value=1.8e+02 Score=27.60 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=42.2
Q ss_pred HHHhH-hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 3 RALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 3 ~~~~~-~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
+.+.. .+..-++.+++|.....+-+..-.++.-.|+..|.. |+.+..+++...+++|+++..+.+.
T Consensus 57 ~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~--y~~t~~~~~~~~~~~gi~v~~~d~~ 123 (377)
T TIGR01324 57 DAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSA--YEPTRYFCDIVLKRMGVDITYYDPL 123 (377)
T ss_pred HHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCC--cHHHHHHHHHHHHhcCcEEEEECCC
Confidence 34443 343456678888886544222223333356666654 6889999988889999998877654
No 388
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=45.79 E-value=22 Score=30.10 Aligned_cols=36 Identities=11% Similarity=0.270 Sum_probs=26.3
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i 357 (361)
...+ .+.+|.++||+++ +|+ ....| ..+.+.|.+.|
T Consensus 165 ~~~a-~~~gv~G~Pt~vv--~g~---~~~~G-~~~~~~~~~~i 200 (201)
T cd03024 165 EARA-RQLGISGVPFFVF--NGK---YAVSG-AQPPEVFLQAL 200 (201)
T ss_pred HHHH-HHCCCCcCCEEEE--CCe---EeecC-CCCHHHHHHHh
Confidence 5566 7889999999998 444 23344 68888887765
No 389
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=45.64 E-value=88 Score=26.97 Aligned_cols=106 Identities=11% Similarity=-0.023 Sum_probs=58.4
Q ss_pred EEEecchHHH-------HHHHHHHHc-CCCceEEEccCCCC-cHHHHHHHHHHHHHh-CCcEEEEcCC-hHHHHHHHHhc
Q 018045 13 AIAFSGAEDV-------ALIEYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHF-GIRIEYMFPD-AVEVQALVRSK 81 (361)
Q Consensus 13 ~vs~SGGKDS-------~~l~l~~~~-~~~i~v~~~dtg~~-~pet~~~v~~~~~~~-g~~i~~~~p~-~~~~~~~~~~~ 81 (361)
++..|||.|. .+-+++.+. +....++|+-|... .++....+.+..+++ |.++..+... .....+.+...
T Consensus 2 l~~igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~a 81 (212)
T cd03146 2 LLLTSGGGLGYLAHALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEA 81 (212)
T ss_pred EEEEeCCcccccccchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcC
Confidence 4677888663 222444444 45678899999865 456566667777788 8887766421 01111222222
Q ss_pred CCCCCCccchhchhhccccHHHHHHHcc---CCEEEEeee
Q 018045 82 GLFSFYEDGHQECCRVRKVRPLRRALKG---LRAWITGQR 118 (361)
Q Consensus 82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~~---~~~~i~G~R 118 (361)
..-.++--+...+-..+|..++...++. ....+.|+-
T Consensus 82 d~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~S 121 (212)
T cd03146 82 DVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWS 121 (212)
T ss_pred CEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEEC
Confidence 1111222345556666676666666653 245666663
No 390
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.99 E-value=1.9e+02 Score=24.53 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=55.9
Q ss_pred cEEEEecchHHHH-HHHHHHHcCCCceEEEccCCCCcHHHHHH----HHHHHHHhCCcEEEEcC-ChHHHHHHHHhcCCC
Q 018045 11 DIAIAFSGAEDVA-LIEYAHLTGRPFRVFSLDTGRLNPETYRF----FDEVEKHFGIRIEYMFP-DAVEVQALVRSKGLF 84 (361)
Q Consensus 11 ~i~vs~SGGKDS~-~l~l~~~~~~~i~v~~~dtg~~~pet~~~----v~~~~~~~g~~i~~~~p-~~~~~~~~~~~~~~~ 84 (361)
++++=.--+=||+ +|.-+...+.++.++|-|...++-.-|.. ++++++++|++++.-.- +...+-+. -+|+.
T Consensus 5 kiLlH~CCAPcs~y~le~l~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w~~~--vKg~E 82 (204)
T COG1636 5 KLLLHSCCAPCSGYVLEKLRDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKWFER--VKGME 82 (204)
T ss_pred eeEEEeecCCCcHHHHHHHHhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHHHHH--hhcch
Confidence 3443333666765 56666677889999999999887666554 46778888987754221 11112222 23332
Q ss_pred CCCccc-hhchhhccccHHHHHHHc--cCCE
Q 018045 85 SFYEDG-HQECCRVRKVRPLRRALK--GLRA 112 (361)
Q Consensus 85 ~~~~~~-~~~cc~~~K~~pl~~~~~--~~~~ 112 (361)
--+..+ +..-|..+..+-...+.. |+++
T Consensus 83 ~EpE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ 113 (204)
T COG1636 83 DEPEGGKRCTMCFDMRLEKTAKKAKELGFDV 113 (204)
T ss_pred hCCCCCchhHhHHHHHHHHHHHHHHHcCCch
Confidence 223222 233366666555544444 5553
No 391
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=43.28 E-value=89 Score=28.70 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcC----
Q 018045 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKL---- 322 (361)
Q Consensus 249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~---- 322 (361)
+-|.++|=+|-+++.+ ++.|.+|+|+.+--....+ -.-..+++++.+ ..+.++..|++.. .... ..+
T Consensus 210 pLVREiTFeN~EELtE---EGlPflILf~~kdD~~s~k--~F~~aI~ReL~~e~~~in~l~ADG~~f-~hpL-~HlgKs~ 282 (375)
T KOG0912|consen 210 PLVREITFENAEELTE---EGLPFLILFRKKDDKESEK--IFKNAIARELDDETLAINFLTADGKVF-KHPL-RHLGKSP 282 (375)
T ss_pred hhhhhhhhccHHHHhh---cCCceEEEEecCCcccHHH--HHHHHHHHHhhhhhhccceeecCccee-cchH-HHhCCCc
Confidence 4577888888888877 9999999999886443322 122445555544 2588888888776 3322 222
Q ss_pred ------CCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 323 ------QLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 323 ------~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
-|.++=.+++|+.++ .+ ..+..|.+|+..|
T Consensus 283 ~DLPviaIDsF~Hmylfp~f~--di------~~pGkLkqFv~DL 318 (375)
T KOG0912|consen 283 DDLPVIAIDSFRHMYLFPDFN--DI------NIPGKLKQFVADL 318 (375)
T ss_pred ccCcEEEeeccceeeecCchh--hh------cCccHHHHHHHHH
Confidence 233444455555544 12 2334777777654
No 392
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=42.97 E-value=41 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=32.6
Q ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 018045 32 GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 68 (361)
Q Consensus 32 ~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~ 68 (361)
+.++.|+-+|.+..|+..++|.+++++..|..+++..
T Consensus 102 ~~~vdVigIDEaQFf~dl~efc~evAd~~Gk~Vivag 138 (234)
T KOG3125|consen 102 NGDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVAG 138 (234)
T ss_pred cCcceEEEecHHHHhHHHHHHHHHHHhccCCEEEEEe
Confidence 4468999999999999999999999999997777653
No 393
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=42.59 E-value=89 Score=20.99 Aligned_cols=53 Identities=11% Similarity=0.017 Sum_probs=32.1
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---chHHHHHcCCCCCCCeEEE
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---~~~l~~~~~~v~~~Pt~~~ 332 (361)
..|+.+.|+.|+...-.++...- .+....+|.... ..++. +......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~-----~~~~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI-----PYEWVEVDILKGETRTPEFL-ALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-----CcEEEEecCCCcccCCHHHH-HhCCCCCCCEEEE
Confidence 46788999999988766655422 344455554221 13444 4445567999864
No 394
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=42.48 E-value=56 Score=28.69 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=24.3
Q ss_pred CCcEEEEEECCCChhHHhhHHHHHHHHHHhcC
Q 018045 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 300 (361)
Q Consensus 269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~ 300 (361)
.+..++.|+...|++|+...|.+.+.......
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 36788888889999998888888875544443
No 395
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=42.25 E-value=2e+02 Score=27.36 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=40.6
Q ss_pred hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHH
Q 018045 8 FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALV 78 (361)
Q Consensus 8 ~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~ 78 (361)
++..-++.+++|.....+-+..-..+.-.|+.. ...|+.+..+++.+ ..+|+++..+.++...+.+.+
T Consensus 66 ~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~--~~~y~~~~~~~~~~-~~~g~~v~~~~~d~~~l~~~i 133 (385)
T PRK08574 66 EGGVDALAFNSGMAAISTLFFSLLKAGDRVVLP--MEAYGTTLRLLKSL-EKFGVKVVLAYPSTEDIIEAI 133 (385)
T ss_pred hCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEc--CCCchhHHHHHHHh-hccCcEEEEECCCHHHHHHhc
Confidence 343345778888876544322223333234433 34678888888776 778988877766654444443
No 396
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=41.97 E-value=1.3e+02 Score=21.80 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=38.6
Q ss_pred HHHHHcCCCceE-EEccCC-CCcHHHHHHHHHHHHHh-CCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045 26 EYAHLTGRPFRV-FSLDTG-RLNPETYRFFDEVEKHF-GIRIEYMFPDAVEVQALVRSKGLFSF 86 (361)
Q Consensus 26 ~l~~~~~~~i~v-~~~dtg-~~~pet~~~v~~~~~~~-g~~i~~~~p~~~~~~~~~~~~~~~~~ 86 (361)
.++..+..++.+ +|...+ ..-|.+.+.++++++.+ ++++.++.-+ ...+...+++..+.
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~~e~a~~~~V~~v 66 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LFQDEVEERGIMSV 66 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hCHHHHHHcCCccC
Confidence 455566666543 455555 67899999999999998 5677666433 23445566665443
No 397
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=41.72 E-value=34 Score=29.71 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=16.2
Q ss_pred cEEEEecchHHHHHH-HHHHHcCCCceE
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTGRPFRV 37 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v 37 (361)
+++-..||||||.-- +-+.+.+-.+.+
T Consensus 2 rvvaLiSGGKDScynmm~cv~~gHeiVa 29 (277)
T KOG2316|consen 2 RVVALISGGKDSCYNMMCCVRLGHEIVA 29 (277)
T ss_pred cEEEEEeCChHHHHHHHHHHHcCCeeee
Confidence 455668999999733 334444444433
No 398
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=41.51 E-value=3.1e+02 Score=25.83 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=63.3
Q ss_pred CCceecCcc-cHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045 249 QNLVTLNRT-GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 327 (361)
Q Consensus 249 ~~v~~l~~~-~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~ 327 (361)
.+|..++.+ +++.+-. . ...+-||-|+.+--+. -...|+++|+.|.. -|.|..+ -+ ..++ ++++++ +
T Consensus 146 dPVeiIn~~~e~~~Fe~-i-ed~~klIGyFk~~~s~---~yk~FeeAAe~F~p-~IkFfAt---fd-~~vA-k~L~lK-~ 213 (383)
T PF01216_consen 146 DPVEIINNKHELKAFER-I-EDDIKLIGYFKSEDSE---HYKEFEEAAEHFQP-YIKFFAT---FD-KKVA-KKLGLK-L 213 (383)
T ss_dssp SSEEEE-SHHHHHHHHH----SS-EEEEE-SSTTSH---HHHHHHHHHHHCTT-TSEEEEE----S-HHHH-HHHT-S-T
T ss_pred cchhhhcChhhhhhhhh-c-ccceeEEEEeCCCCcH---HHHHHHHHHHhhcC-ceeEEEE---ec-chhh-hhcCcc-c
Confidence 457667553 3333332 1 2357777777764222 34578899999987 6887764 34 7888 899996 7
Q ss_pred CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
=.+-+|..=-..++...+.+.+.++|++||++.
T Consensus 214 nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h 246 (383)
T PF01216_consen 214 NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEH 246 (383)
T ss_dssp T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT
T ss_pred cceeeeccccCCCccCCCCCCCHHHHHHHHHHh
Confidence 788888776555888888889999999999864
No 399
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=40.88 E-value=2.2e+02 Score=27.34 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=40.8
Q ss_pred CcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH
Q 018045 10 NDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV 72 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~ 72 (361)
..-.++||.|--+..+.++.-..+.=.++..+. -|..|+.+.+.+.+++|+++..+.|...
T Consensus 78 ~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~--~YG~t~~~~~~~l~~~gi~~~~~d~~~~ 138 (396)
T COG0626 78 GEDAFAFSSGMAAISTALLALLKAGDHVLLPDD--LYGGTYRLFEKILQKFGVEVTFVDPGDD 138 (396)
T ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCEEEecCC--ccchHHHHHHHHHHhcCeEEEEECCCCh
Confidence 456789997777543322222221223454455 4899999999999999999998877643
No 400
>PRK07050 cystathionine beta-lyase; Provisional
Probab=40.28 E-value=2.2e+02 Score=27.19 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=39.6
Q ss_pred CCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 9 GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 9 ~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
+..-++.++||..+..+-+..-.++.-.|+..+. .|+.+..+.+.....+|+++..+.+.
T Consensus 79 g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~--~y~~~~~~~~~~~~~~Gi~v~~vd~~ 138 (394)
T PRK07050 79 GGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDN--AYGPNRDHGEWLARDFGITVRFYDPL 138 (394)
T ss_pred CCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecC--CcccHHHHHHHHHHhcCeEEEEECCC
Confidence 4456788899998764422111333334555443 46788888888899999998877654
No 401
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=40.14 E-value=67 Score=30.93 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=57.9
Q ss_pred CcEEEEecchHHHHHH-HHHHH-cC-----CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh-H---HHHHHH
Q 018045 10 NDIAIAFSGAEDVALI-EYAHL-TG-----RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA-V---EVQALV 78 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-~l~~~-~~-----~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~-~---~~~~~~ 78 (361)
.++-|..|||-||.++ .++.+ .. ..-++...-.|.+-..-+...+++++.+|...+.+.-.. . .+++.+
T Consensus 226 ~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGle~SPDL~aarkVAd~igt~Hhe~~ft~qegidal~eVI 305 (543)
T KOG0571|consen 226 VPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAIGLEDSPDLLAARKVADFIGTIHHEHTFTIQEGIDALDEVI 305 (543)
T ss_pred CceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEecCCCChhHHHHHHHHHHhCCcceEEEEcHHHHHHHHHHHh
Confidence 4688999999998766 55444 11 111233334465545556678999999998766543222 2 222222
Q ss_pred HhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCc
Q 018045 79 RSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 123 (361)
Q Consensus 79 ~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~ 123 (361)
.. +.+......|.-+ -+..|.+.++ +..++++|--+||-.
T Consensus 306 ~h--LETYDvttIRast---pmyLlsr~Ikk~gvkmvlSGEGsDEif 347 (543)
T KOG0571|consen 306 YH--LETYDVTTIRAST---PMYLLSRKIKKLGVKMVLSGEGSDEIF 347 (543)
T ss_pred ee--eeccccceEecCC---chHHHHHHHHhcceEEEEecCCchhhh
Confidence 11 1111111111111 1234445554 456888898888864
No 402
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=40.06 E-value=52 Score=32.61 Aligned_cols=79 Identities=15% Similarity=0.295 Sum_probs=51.6
Q ss_pred eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHH-H--HHHHHHhcCCCeEEEEEEcCCCchHHHH-------Hc
Q 018045 252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGDQKEYAK-------QK 321 (361)
Q Consensus 252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~vd~~~~~~~l~~-------~~ 321 (361)
.....+.|++.-. +++++++...-+.|..|..|+.+ | ++.++.+.+ ++.-++||-++- +++-+ ..
T Consensus 98 ypwgqeaf~kar~---enkpifLsvgystchwchvmekesfeneet~~ilne-nfv~ikVDREER-PDVDK~YM~Fv~as 172 (786)
T KOG2244|consen 98 YPWGQEAFNKARA---ENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE-NFVKIKVDREER-PDVDKLYMAFVVAS 172 (786)
T ss_pred CcchHHHHHHHHh---cCCCEEEEcccccchheeeeecccccCHHHHHHHhh-hhhhhccChhhc-CchHHHHHHHHHhc
Confidence 3344566777655 89999999999999999999875 3 447777766 444444444443 44431 23
Q ss_pred CCCCCCCeEEEEeC
Q 018045 322 LQLGSFPTILFFPK 335 (361)
Q Consensus 322 ~~v~~~Pt~~~~~~ 335 (361)
.+--+.|--++...
T Consensus 173 sg~GGWPmsV~LTP 186 (786)
T KOG2244|consen 173 SGGGGWPMSVFLTP 186 (786)
T ss_pred cCCCCCceeEEeCC
Confidence 45567787666644
No 403
>PRK10490 sensor protein KdpD; Provisional
Probab=40.04 E-value=1.5e+02 Score=31.88 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=63.8
Q ss_pred CcEEEEecchHHHH-HH----HHHHHcCCCceEEEccCCCC--c-H----HHHHHHHHHHHHhCCcEEEEcCCh--HHHH
Q 018045 10 NDIAIAFSGAEDVA-LI----EYAHLTGRPFRVFSLDTGRL--N-P----ETYRFFDEVEKHFGIRIEYMFPDA--VEVQ 75 (361)
Q Consensus 10 ~~i~vs~SGGKDS~-~l----~l~~~~~~~i~v~~~dtg~~--~-p----et~~~v~~~~~~~g~~i~~~~p~~--~~~~ 75 (361)
++|+|+.||+..|- ++ .|+.+.+.+..++|++++.. . + ...+++ ++++.+|.+++++..+. ..+-
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~-~lA~~lGa~~~~~~~~dva~~i~ 329 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSAL-RLAQELGAETATLSDPAEEKAVL 329 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHH-HHHHHcCCEEEEEeCCCHHHHHH
Confidence 57999999998873 43 47777888999999998731 1 1 122344 48999999988776553 3445
Q ss_pred HHHHhcCCCCC--Ccc-chhchhhccccHHHHHHHc---cCCEEEEee
Q 018045 76 ALVRSKGLFSF--YED-GHQECCRVRKVRPLRRALK---GLRAWITGQ 117 (361)
Q Consensus 76 ~~~~~~~~~~~--~~~-~~~~cc~~~K~~pl~~~~~---~~~~~i~G~ 117 (361)
++.+..+.... -.+ .+.| .++....++.++ +.++.|...
T Consensus 330 ~~A~~~~vt~IViG~s~~~~~---~~~~s~~~~l~r~~~~idi~iv~~ 374 (895)
T PRK10490 330 RYAREHNLGKIIIGRRASRRW---WRRESFADRLARLGPDLDLVIVAL 374 (895)
T ss_pred HHHHHhCCCEEEECCCCCCCC---ccCCCHHHHHHHhCCCCCEEEEeC
Confidence 55566554211 111 1223 334345555554 667777643
No 404
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=39.63 E-value=1.4e+02 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=19.9
Q ss_pred CcEEEEecchHHHHHH-----HHHHHcCCCceEEEcc
Q 018045 10 NDIAIAFSGAEDVALI-----EYAHLTGRPFRVFSLD 41 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l-----~l~~~~~~~i~v~~~d 41 (361)
.+|++.+.+|-.|.++ .++.+.+.++.+....
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 3788999977666544 3445556665555443
No 405
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=37.84 E-value=1.6e+02 Score=24.40 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=38.7
Q ss_pred CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 018045 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG 312 (361)
Q Consensus 268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~ 312 (361)
.++.+||.=-|+.|+.-..--..+..|.+.|+..++.++..=|..
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 588888888999999988777799999999987788888888764
No 406
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=36.82 E-value=45 Score=25.67 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=23.6
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 313 (361)
+..|+.|.|+.|+.....+++- ++.|-.+|.-++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-------gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-------GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEeehhcC
Confidence 4578899999999877555442 466666666443
No 407
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=36.43 E-value=59 Score=26.64 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.5
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCC
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
...+ .+++|.++||+++ +|+
T Consensus 133 ~~~~-~~~gi~gTPt~iI--nG~ 152 (178)
T cd03019 133 EKLA-KKYKITGVPAFVV--NGK 152 (178)
T ss_pred HHHH-HHcCCCCCCeEEE--CCE
Confidence 5667 7899999999998 565
No 408
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=36.35 E-value=2.9e+02 Score=26.41 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=42.9
Q ss_pred CcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh-HHHHHHH
Q 018045 10 NDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA-VEVQALV 78 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~-~~~~~~~ 78 (361)
..-++.||.|--+..+.+..-..+.-.++..+. .|..|+.+++++..++|+++..+.+.. ..++..+
T Consensus 70 g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~--~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l 137 (386)
T PF01053_consen 70 GEDALLFSSGMAAISAALLALLKPGDHIVASDD--LYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAAL 137 (386)
T ss_dssp -SEEEEESSHHHHHHHHHHHHS-TTBEEEEESS--SSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHH
T ss_pred ccceeeccchHHHHHHHHHhhcccCCceEecCC--ccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhc
Confidence 345677887777653322222222334565554 489999999999999999999887743 3444443
No 409
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=35.70 E-value=2.1e+02 Score=24.78 Aligned_cols=64 Identities=25% Similarity=0.386 Sum_probs=37.5
Q ss_pred CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 280 WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 280 wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
.|+.||.+.-.+. .++..+.+-.||.... ++-. +...-.+=|=++.|+. + ...+.+.+++||++
T Consensus 20 dcpf~qr~~m~L~-----~k~~~f~vttVd~~~k-p~~f-~~~sp~~~~P~l~~d~-~--------~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LKGVPFKVTTVDLSRK-PEWF-LDISPGGKPPVLKFDE-K--------WVTDSDKIEEFLEE 83 (221)
T ss_pred CChhHHHHHHHHH-----HcCCCceEEEeecCCC-cHHH-HhhCCCCCCCeEEeCC-c--------eeccHHHHHHHHHH
Confidence 3899998877766 2222578889999887 5544 3333333333344432 2 13456677777765
No 410
>PRK08114 cystathionine beta-lyase; Provisional
Probab=35.56 E-value=2.6e+02 Score=26.85 Aligned_cols=59 Identities=8% Similarity=0.073 Sum_probs=39.3
Q ss_pred CcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 10 NDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 10 ~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
..-++.||.|.-+..+-+..-..+.-.|+..+ ..|..|+.+.+++.+++|+++..+.+.
T Consensus 77 ~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~--~~Yg~t~~l~~~~l~~~Gi~v~~vd~~ 135 (395)
T PRK08114 77 GAGCALYPCGAAAVANAILAFVEQGDHVLMTG--TAYEPTQDFCSKILSKLGVTTTWFDPL 135 (395)
T ss_pred CCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeC--CCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 45678888888865431111122222345443 357999999999999999999988764
No 411
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=34.06 E-value=1.3e+02 Score=31.58 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=46.7
Q ss_pred CcEEEEecchHHHH-HH----HHHHHcCCCceEEEccCCCCc------HHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 10 NDIAIAFSGAEDVA-LI----EYAHLTGRPFRVFSLDTGRLN------PETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 10 ~~i~vs~SGGKDS~-~l----~l~~~~~~~i~v~~~dtg~~~------pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
++|+|+.||+-.|- ++ .|+.+...+..++|+||+..+ ...+.-..++++.+|-++.++...
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~ 320 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGG 320 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 68999999877764 33 678888889999999999643 234455678999999999887644
No 412
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.01 E-value=3.6e+02 Score=26.18 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=39.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 9 GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 9 ~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
+..-++++|+|..+..+-+..-..+.-.|+..+ .+|+.|..++.....++|+++..+.++
T Consensus 78 g~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~--~~y~~t~~~~~~~l~~~Gi~v~~vd~~ 137 (433)
T PRK08134 78 GGVGAIATASGQAALHLAIATLMGAGSHIVASS--ALYGGSHNLLHYTLRRFGIETTFVKPG 137 (433)
T ss_pred CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeC--CccHHHHHHHHHHHhhCCeEEEEECCC
Confidence 434578899998875442211122222445443 457899999988788899999888764
No 413
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=33.13 E-value=74 Score=24.44 Aligned_cols=53 Identities=19% Similarity=0.324 Sum_probs=36.8
Q ss_pred ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCC--CCCCCeEEEEeCC
Q 018045 281 CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ--LGSFPTILFFPKH 336 (361)
Q Consensus 281 C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~--v~~~Pt~~~~~~g 336 (361)
|++|..++-.+...-..-. .+.+..|+....-.++. ...+ =++.|++++=.+.
T Consensus 24 Cp~c~~iEGlLa~~P~l~~--~ldV~rV~f~RPR~~vi-~llGE~~QslPvLVL~~~~ 78 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRE--RLDVRRVDFPRPRQAVI-ALLGEANQSLPVLVLADGA 78 (112)
T ss_pred CCchHHHHhHHhhChhhhh--cccEEEeCCCCchHHHH-HHhChhccCCCEEEeCCCC
Confidence 9999998887766544433 58899999988733444 4433 4689998886543
No 414
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=32.03 E-value=2.3e+02 Score=27.54 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=40.9
Q ss_pred hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 8 FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 8 ~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
.+.+-++.+|+|.....+.+..-..+.-.|+..+ ..|+.|+.....+.+++|++++.+...
T Consensus 77 eg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~ 137 (431)
T PRK08248 77 EGGIGALAVSSGQAAITYSILNIASAGDEIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPS 137 (431)
T ss_pred hCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCC
Confidence 3456778899998876543322233333455544 347889998889899999998877543
No 415
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=31.74 E-value=1.5e+02 Score=28.90 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=34.1
Q ss_pred HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 018045 26 EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 67 (361)
Q Consensus 26 ~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~ 67 (361)
.-++..++++.++-.-+-..-+||.+..+++.++|++++..+
T Consensus 174 ~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpv 215 (492)
T PF09547_consen 174 EELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPV 215 (492)
T ss_pred HHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEe
Confidence 345667889877765566778999999999999999998765
No 416
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=31.21 E-value=3.3e+02 Score=23.60 Aligned_cols=83 Identities=11% Similarity=0.146 Sum_probs=50.5
Q ss_pred CCCcEEEEEE-----CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------chHHHHHcC
Q 018045 268 RQEPWLVVLY-----APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKL 322 (361)
Q Consensus 268 ~~~~vlv~F~-----a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~ 322 (361)
...+++..|. ..-|+-|-.+...+.-....+...++.|+.|--..- ..++. ..|
T Consensus 67 r~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs~Fn-~D~ 145 (211)
T PF05988_consen 67 RRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGSDFN-YDF 145 (211)
T ss_pred CceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCCccc-ccc
Confidence 4455555555 456999999999995555555554688888764221 02333 456
Q ss_pred CC-----CCCCeEEEE-eCCCCCeeecCCCCCCHH
Q 018045 323 QL-----GSFPTILFF-PKHSSKPIKYPSERRDVD 351 (361)
Q Consensus 323 ~v-----~~~Pt~~~~-~~g~~~~~~~~~~~~~~~ 351 (361)
++ ...|.+-+| ++|..+...|....+-.+
T Consensus 146 ~~~~~~~~~~~g~svF~Rdg~~VfhTyst~~RG~e 180 (211)
T PF05988_consen 146 GVSFDEGGEMPGLSVFLRDGGRVFHTYSTYGRGGE 180 (211)
T ss_pred cceeccCCCceeEEEEEEcCCEEEEEeecCCCCch
Confidence 65 567877666 666655556655333333
No 417
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=31.15 E-value=88 Score=26.80 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.4
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCC
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
.... ++++|+++||+++ +|+
T Consensus 157 ~~~a-~~~gI~gtPtfiI--nGk 176 (207)
T PRK10954 157 EKAA-ADLQLRGVPAMFV--NGK 176 (207)
T ss_pred HHHH-HHcCCCCCCEEEE--CCE
Confidence 4566 7899999999998 666
No 418
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=30.87 E-value=29 Score=24.50 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=29.3
Q ss_pred ccCcHHHHHHHHH----hCCCCCCccccCCCCCCCCCCCCCC
Q 018045 155 ANVKGNDIWNFLR----TMDVPINSLHSQGYISIGCEPCTRP 192 (361)
Q Consensus 155 ~~W~~~dv~~yi~----~~~lp~~~lY~~g~~~~GC~~Ct~~ 192 (361)
-.||+.+||+++. .+.++....-.+-|.=-|...|..+
T Consensus 6 ~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms 47 (74)
T cd08539 6 QYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMS 47 (74)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccC
Confidence 4799999999986 5688777666666776788888654
No 419
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=30.61 E-value=1.8e+02 Score=24.75 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=40.4
Q ss_pred EEEEec-chHHHHHHHHHHH---cCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 018045 12 IAIAFS-GAEDVALIEYAHL---TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 68 (361)
Q Consensus 12 i~vs~S-GGKDS~~l~l~~~---~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~ 68 (361)
++|+-+ -||-+++..|+.+ .+..+.++..||-. ....+.++.+++.+|+++....
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R--~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR--IGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS--THHHHHHHHHHHHHTEEEEESS
T ss_pred EEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC--ccHHHHHHHHHHHhccccchhh
Confidence 345556 5799988865544 36678888899886 7788889999999999987654
No 420
>PRK05967 cystathionine beta-lyase; Provisional
Probab=30.57 E-value=3.9e+02 Score=25.62 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=37.9
Q ss_pred cEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 11 DIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
.-.+.++.|.....+-+..-..+.-.|+..+.+ |+.++.++.++.+++|+++..+.+.
T Consensus 80 ~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~--Y~~~~~l~~~~l~~~Gi~v~~vd~~ 137 (395)
T PRK05967 80 AGTILVPSGLAAVTVPFLGFLSPGDHALIVDSV--YYPTRHFCDTMLKRLGVEVEYYDPE 137 (395)
T ss_pred CCEEEECcHHHHHHHHHHHhcCCCCEEEEccCC--cHHHHHHHHHHHHhcCeEEEEeCCC
Confidence 345666667654333222223443356666655 6889999999999999999888665
No 421
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.56 E-value=51 Score=28.91 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=28.7
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~ 360 (361)
..+. ++++|.++||+++-.. .+.| ..+.++|.+.|...
T Consensus 205 ~~~a-~~~gv~gTPt~~v~~~------~~~g-~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLA-QQLGVNGTPTFIVNGK------LVPG-LPDLDELKAIIDEA 242 (244)
T ss_pred HHHH-HhcCCCcCCeEEECCe------eecC-CCCHHHHHHHHHHh
Confidence 4566 7899999999888643 3444 56789999888764
No 422
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=30.46 E-value=67 Score=24.30 Aligned_cols=57 Identities=9% Similarity=0.183 Sum_probs=35.0
Q ss_pred EECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC--CCCeEEEE-eCCC
Q 018045 276 LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--SFPTILFF-PKHS 337 (361)
Q Consensus 276 F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~--~~Pt~~~~-~~g~ 337 (361)
||-..|+.|......+..... . ..+.|+.+.-... .++. +.+++. ..-+.+.. ++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~-~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--G-GRLRFVDIQSEPD-QALL-ASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--C-CCEEEEECCChhh-hhHH-HhcCcCHHHHcCeeEEecCCC
Confidence 788999999999988877721 1 2566665533333 4444 456654 45555554 5554
No 423
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=30.03 E-value=1.5e+02 Score=26.47 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=27.3
Q ss_pred EEEEec-ch--HHHHHHHHHHH---cCCCceEEEccC-CCCcHHHHHHHHHHHHHhCCcE
Q 018045 12 IAIAFS-GA--EDVALIEYAHL---TGRPFRVFSLDT-GRLNPETYRFFDEVEKHFGIRI 64 (361)
Q Consensus 12 i~vs~S-GG--KDS~~l~l~~~---~~~~i~v~~~dt-g~~~pet~~~v~~~~~~~g~~i 64 (361)
|+|+.. || |.++.+||+.. .|..|-++=+|. |.-+|-..+-.....++-|+++
T Consensus 3 IvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~L 62 (261)
T PF09140_consen 3 IVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIEL 62 (261)
T ss_dssp EEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT---
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCccc
Confidence 344444 65 87887787665 466666666666 4455655555555555566654
No 424
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=29.75 E-value=2.3e+02 Score=20.84 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=39.5
Q ss_pred CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045 279 PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 279 ~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
..|+.|++..=.+.+. +-.+.+..||.......+. +..-...+|++. .+|. .. .+...+.++|+
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p~~~~-~~nP~g~vPvL~--~~~~---~i-----~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKPEDLK-DLAPGTQPPFLL--YNGE---VK-----TDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCCCHHHH-HhCCCCCCCEEE--ECCE---Ee-----cCHHHHHHHHH
Confidence 5699999877666544 2134556666555424555 555567899665 3332 22 23477888877
Q ss_pred Hh
Q 018045 359 AL 360 (361)
Q Consensus 359 ~~ 360 (361)
+.
T Consensus 84 e~ 85 (91)
T cd03061 84 ET 85 (91)
T ss_pred HH
Confidence 53
No 425
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=29.32 E-value=5e+02 Score=25.07 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=36.8
Q ss_pred cEEEEecchH-HHHHH--HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh
Q 018045 11 DIAIAFSGAE-DVALI--EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA 71 (361)
Q Consensus 11 ~i~vs~SGGK-DS~~l--~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~ 71 (361)
.-+++||-|. -+.++ +|+ ..+ ..+|-.| .-|-.|+.+++++..++|+....+.++.
T Consensus 93 ~~~l~fsSGmaA~~~al~~L~-~~g--~~iV~~~--~~Y~gT~~~l~~~~~~~gie~~~vd~~~ 151 (409)
T KOG0053|consen 93 AHALLFSSGMAAITVALLHLL-PAG--DHIVATG--DVYGGTLRILRKFLPKFGGEGDFVDVDD 151 (409)
T ss_pred ceEEEecccHHHHHHHHHHhc-CCC--CcEEEeC--CCcccHHHHHHHHHHHhCceeeeechhh
Confidence 4467777555 43333 444 222 3344444 5689999999999999999888876553
No 426
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=29.27 E-value=60 Score=23.18 Aligned_cols=33 Identities=12% Similarity=0.295 Sum_probs=18.6
Q ss_pred CCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHH
Q 018045 326 SFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDA 359 (361)
Q Consensus 326 ~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~ 359 (361)
.-|++++++ +|+.. ....-...+.+++.+||++
T Consensus 41 ~~P~L~l~d~~g~~~-E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 41 APPELVLLDEDGEEV-ERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp ---EEEEE-SSS--S-EEEE-SSSSHCHHHHHHHH
T ss_pred CCCEEEEEcCCCCEE-EEEEcccCCHHHHHHHHHH
Confidence 469999996 44433 2222235799999999975
No 427
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=28.71 E-value=1.3e+02 Score=20.33 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=31.4
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEE
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~ 332 (361)
..|+.+.|+.|++..-.+.... .+-.+....+|......++. +......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~---~~i~~~~~~~~~~~~~~~~~-~~~p~~~vP~l~~ 56 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETG---LGDDVELVLVNPWSDDESLL-AVNPLGKIPALVL 56 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhC---CCCCcEEEEcCcccCChHHH-HhCCCCCCCEEEE
Confidence 3567888999998765554421 11134555555433214555 4445677897754
No 428
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.69 E-value=1.7e+02 Score=22.41 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=32.5
Q ss_pred HHHhHhCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHH
Q 018045 3 RALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETY 50 (361)
Q Consensus 3 ~~~~~~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~ 50 (361)
|++++..+.++|+ |||-...|+...|.+..++++-+|.-.+.-+
T Consensus 41 ~a~A~~~~~iivT----kDsDF~~la~~~G~Ppki~wLr~gNvs~~~i 84 (113)
T COG4634 41 WAYARRNNRIIVT----KDSDFADLALTLGSPPKIVWLRCGNVSTREI 84 (113)
T ss_pred HHHHHhcCcEEEE----cCccHHHHHHHcCCCCeEEEEEecCCCHHHH
Confidence 3445555667666 8888888999999888999999996554433
No 429
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=28.62 E-value=2.3e+02 Score=24.42 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=18.0
Q ss_pred hHHHHHcCCCCCCCeEEEEeC
Q 018045 315 KEYAKQKLQLGSFPTILFFPK 335 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~ 335 (361)
+.+. ++|+|+.+|++++.-.
T Consensus 152 P~lF-~~F~I~~VPafVv~C~ 171 (212)
T PRK13730 152 PTLF-SQYGIRSVPALVVFCS 171 (212)
T ss_pred HHHH-HhcCCccccEEEEEcC
Confidence 8888 9999999999999854
No 430
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.39 E-value=1.6e+02 Score=21.70 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=28.7
Q ss_pred CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEc-CChHHHHH
Q 018045 34 PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF-PDAVEVQA 76 (361)
Q Consensus 34 ~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~-p~~~~~~~ 76 (361)
++.+++ |++--..+...+++.++++|+++...+ .....+..
T Consensus 50 D~VIv~--t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~ 91 (97)
T PF10087_consen 50 DLVIVF--TDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLER 91 (97)
T ss_pred CEEEEE--eCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHH
Confidence 444444 444457888999999999999998876 44444433
No 431
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=28.36 E-value=4.1e+02 Score=25.55 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=39.3
Q ss_pred hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 018045 8 FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 69 (361)
Q Consensus 8 ~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p 69 (361)
++..-++.+|+|.+...+.+..-..+.-.|+..+ ..|+.|+.......+.+|++++.+.+
T Consensus 70 ~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 70 EGGVAALAVASGQAAITYAILNLAQAGDNIVSSS--YLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred hCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEEC--CCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 3445678889999876443322222322445444 45688988888888999999887754
No 432
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=28.29 E-value=1.8e+02 Score=25.37 Aligned_cols=73 Identities=14% Similarity=0.204 Sum_probs=51.5
Q ss_pred EccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH--------HH-HHHHHhcCCCCCCccchhchhhccccHHHHHHHcc
Q 018045 39 SLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV--------EV-QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG 109 (361)
Q Consensus 39 ~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~--------~~-~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~ 109 (361)
|+|-|+..=||...+--+..+|.-+|+.++-.-. .+ ++-..++|.. ...++||.+.-.-++...+.+
T Consensus 82 fVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna----n~wkycckVFD~LtlaAiID~ 157 (306)
T KOG0373|consen 82 FVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA----NVWKYCCKVFDFLTLAAIIDE 157 (306)
T ss_pred ccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc----hHHHHHHHHHhhhhHHHHhcC
Confidence 6899998899999999999999989987765422 11 1222344421 346899999999999887776
Q ss_pred CCEEEE
Q 018045 110 LRAWIT 115 (361)
Q Consensus 110 ~~~~i~ 115 (361)
.-..+-
T Consensus 158 ~vLCVH 163 (306)
T KOG0373|consen 158 KVLCVH 163 (306)
T ss_pred cEEEEc
Confidence 554443
No 433
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=27.91 E-value=2.6e+02 Score=20.97 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=23.5
Q ss_pred cEEEEecchHHHH-HH----HHHHHcCCCceEEEccCCC
Q 018045 11 DIAIAFSGAEDVA-LI----EYAHLTGRPFRVFSLDTGR 44 (361)
Q Consensus 11 ~i~vs~SGGKDS~-~l----~l~~~~~~~i~v~~~dtg~ 44 (361)
+|+|+++|.+.|- ++ .++.+.+..+.++++..+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 39 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPR 39 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCc
Confidence 4788888776652 22 4666677788888887764
No 434
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=26.89 E-value=3.3e+02 Score=24.33 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=35.9
Q ss_pred HHhHhCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 018045 4 ALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 67 (361)
Q Consensus 4 ~~~~~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~ 67 (361)
+.....+.+++++| ..+++..++.+..+.+.|+-.++-.. -|-..+++++.+ .|++++.+
T Consensus 81 A~~~i~~dvILT~s--~S~~v~~~l~~~~~~~~V~v~ESrP~-~eG~~~a~~L~~-~GI~vtli 140 (253)
T PRK06372 81 AKPLFNDSVIGTIS--SSQVLKAFISSSEKIKSVYILESRPM-LEGIDMAKLLVK-SGIDVVLL 140 (253)
T ss_pred HHhhcCCCEEEEeC--CcHHHHHHHHhcCCCCEEEEecCCCc-hHHHHHHHHHHH-CCCCEEEE
Confidence 34444557888888 34455555555554456655555443 344666766654 58888755
No 435
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=26.41 E-value=2.2e+02 Score=19.52 Aligned_cols=52 Identities=10% Similarity=-0.036 Sum_probs=32.0
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---chHHHHHcCCCCCCCeEE
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTIL 331 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---~~~l~~~~~~v~~~Pt~~ 331 (361)
..|+.+.|+.|+..+-.+.+.. -.+.+..+|.... .+++. +--....+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~g-----l~~e~~~v~~~~~~~~~~~~~-~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKG-----LRCEEYDVSLPLSEHNEPWFM-RLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcC-----CCCEEEEecCCcCccCCHHHH-HhCcCCCCCEEE
Confidence 5688889999988774444432 2355666665321 14455 444556789985
No 436
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=26.38 E-value=89 Score=25.31 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=25.7
Q ss_pred EEEecchHHHH---HHHHHHH---cCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 018045 13 AIAFSGAEDVA---LIEYAHL---TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 67 (361)
Q Consensus 13 ~vs~SGGKDS~---~l~l~~~---~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~ 67 (361)
.|+||||. -. +..|+.. .+. . +.++||..+++.. +++.+. +++.+.
T Consensus 64 gVt~SGGE-l~~~~l~~ll~~lk~~Gl--~-i~l~Tg~~~~~~~---~~il~~--iD~l~~ 115 (147)
T TIGR02826 64 CVLFLGGE-WNREALLSLLKIFKEKGL--K-TCLYTGLEPKDIP---LELVQH--LDYLKT 115 (147)
T ss_pred EEEEechh-cCHHHHHHHHHHHHHCCC--C-EEEECCCCCHHHH---HHHHHh--CCEEEE
Confidence 69999999 21 1133333 333 2 4678997777643 344433 455544
No 437
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=26.30 E-value=1.2e+02 Score=20.72 Aligned_cols=71 Identities=8% Similarity=0.016 Sum_probs=40.7
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC---CchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD 349 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~---~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~ 349 (361)
+..|+.+.|+.|+...-.+....- .+.+..++... ...++. +......+|++.. +|. .. ..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i-----~~~~~~~~~~~~~~~~~~~~-~~~P~~~vP~l~~--~g~---~l-----~e 65 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV-----DYELVPVDLTKGEHKSPEHL-ARNPFGQIPALED--GDL---KL-----FE 65 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC-----CcEEEEeCccccccCCHHHH-hhCCCCCCCEEEE--CCE---EE-----Ec
Confidence 456667789999988766665432 24444555431 114555 5556778998752 332 22 23
Q ss_pred HHHHHHHHHH
Q 018045 350 VDSLMAFVDA 359 (361)
Q Consensus 350 ~~~l~~~i~~ 359 (361)
...+.++|.+
T Consensus 66 s~aI~~yL~~ 75 (76)
T cd03053 66 SRAITRYLAE 75 (76)
T ss_pred HHHHHHHHhh
Confidence 4666666653
No 438
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=5.6e+02 Score=24.05 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=29.8
Q ss_pred EEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045 307 KFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358 (361)
Q Consensus 307 ~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~ 358 (361)
..|.... ..+. .-|.+..+|.+.+++.-....+..-.+...++.|+.-++
T Consensus 137 ~~Dtseg-~~~~-~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~ 186 (356)
T KOG1364|consen 137 LDDTSEG-QPFS-AFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLN 186 (356)
T ss_pred eeccCCC-Cchh-hheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHH
Confidence 3444444 6666 788999999999996543323433333455555554443
No 439
>PLN02720 complex II
Probab=25.76 E-value=44 Score=26.21 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=17.2
Q ss_pred EEeeCccCcHHHHHHHHHhC
Q 018045 150 KWNPVANVKGNDIWNFLRTM 169 (361)
Q Consensus 150 ~~~Pi~~W~~~dv~~yi~~~ 169 (361)
+-.||--||+.||.+||..-
T Consensus 33 rdkPLP~Ws~sDVeeFIaSD 52 (140)
T PLN02720 33 RDKPLPPWSDSDVDEFIASD 52 (140)
T ss_pred CCCCCCCCchhhHHHHHhcC
Confidence 45688899999999999864
No 440
>PRK07582 cystathionine gamma-lyase; Validated
Probab=25.73 E-value=2.9e+02 Score=25.99 Aligned_cols=57 Identities=12% Similarity=0.023 Sum_probs=35.2
Q ss_pred EEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 12 IAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 12 i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
-.+.+++|.+...+-+..-..+.-.++..+.+ |..+..+.+...+++|+++..+...
T Consensus 67 ~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~--y~~~~~~~~~~l~~~G~~v~~v~~~ 123 (366)
T PRK07582 67 EALVFPSGMAAITAVLRALLRPGDTVVVPADG--YYQVRALAREYLAPLGVTVREAPTA 123 (366)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCEEEEeCCC--cHhHHHHHHHHHhcCeEEEEEECCC
Confidence 35667777775433222223333355555544 5788888877778899998877544
No 441
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=25.50 E-value=73 Score=24.33 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=23.9
Q ss_pred EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 313 (361)
+..|+.+.|..|++....+++- ++.|..+|+-+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA-------GIEPEIVEYLKT 34 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-------CCCeEEEecccC
Confidence 3578899999999987555543 466666776544
No 442
>PRK06234 methionine gamma-lyase; Provisional
Probab=25.39 E-value=3.4e+02 Score=25.93 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=39.1
Q ss_pred hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 8 FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 8 ~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
++..-++.+++|.....+.+..-..+.-.|+..+. .|+.+........+.+|+++..+...
T Consensus 77 ~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~--~y~~~~~~~~~~~~~~G~~v~~vd~~ 137 (400)
T PRK06234 77 EGGEAAVVAASGMGAISSSLWSALKAGDHVVASDT--LYGCTFALLNHGLTRYGVEVTFVDTS 137 (400)
T ss_pred hCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecC--ccchHHHHHHHHHhhCCeEEEEECCC
Confidence 34345688999998654433222333334554443 47888888888888899998877543
No 443
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=25.21 E-value=59 Score=22.50 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=27.7
Q ss_pred ccCcHHHHHHHHH----hCCCCCCccccCCCCCCCCCCCCC
Q 018045 155 ANVKGNDIWNFLR----TMDVPINSLHSQGYISIGCEPCTR 191 (361)
Q Consensus 155 ~~W~~~dv~~yi~----~~~lp~~~lY~~g~~~~GC~~Ct~ 191 (361)
..||.+||+.++. +++++..++--..|.=.|-..|..
T Consensus 3 ~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~m 43 (68)
T cd08757 3 QYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSM 43 (68)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcC
Confidence 3699999999885 588988766666666567666653
No 444
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=24.98 E-value=90 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=17.7
Q ss_pred EEEEECCCChhHHhhHHHHHHH
Q 018045 273 LVVLYAPWCQFCQAMEGSYVEL 294 (361)
Q Consensus 273 lv~F~a~wC~~C~~~~p~~~~l 294 (361)
+..|+.|.|..|+....-+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678899999999988766543
No 445
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=24.82 E-value=76 Score=24.34 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=24.2
Q ss_pred EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045 274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313 (361)
Q Consensus 274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~ 313 (361)
..|+.+.|..|++....+++- ++.|..+|..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-------CCCeEEEeccCC
Confidence 578899999999988766653 466666776544
No 446
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=24.63 E-value=3.9e+02 Score=25.62 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=39.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 9 GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 9 ~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
+..-++.+|+|.+...+-+..-..+.-.|+..+. .|+.|+.....+.+++|++++.+...
T Consensus 84 g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~ 143 (403)
T PRK07810 84 GAEACFATASGMSAVFTALGALLGAGDRLVAARS--LFGSCFVVCNEILPRWGVETVFVDGE 143 (403)
T ss_pred CCCcEEEECChHHHHHHHHHHHhCCCCEEEEccC--CcchHHHHHHHHHHHcCcEEEEECCC
Confidence 4446788888888754422111233334554442 57888888888889999999888554
No 447
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=24.48 E-value=2.1e+02 Score=19.56 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=16.0
Q ss_pred eEEEccCCCCcHHHHHHHHHHHHHhCCcE
Q 018045 36 RVFSLDTGRLNPETYRFFDEVEKHFGIRI 64 (361)
Q Consensus 36 ~v~~~dtg~~~pet~~~v~~~~~~~g~~i 64 (361)
.+++...=..-+.+...++++++.++.++
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l~~~~~~~~ 32 (82)
T TIGR00411 4 ELFTSPTCPYCPAAKRVVEEVAKEMGDAV 32 (82)
T ss_pred EEEECCCCcchHHHHHHHHHHHHHhcCce
Confidence 34444444555666666666666665443
No 448
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=24.35 E-value=16 Score=24.40 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=7.8
Q ss_pred CccCcHHHHHHHHHhCCCCCCccccCC
Q 018045 154 VANVKGNDIWNFLRTMDVPINSLHSQG 180 (361)
Q Consensus 154 i~~W~~~dv~~yi~~~~lp~~~lY~~g 180 (361)
|+.|..-++-.+.++.|+||.+|=+.|
T Consensus 23 LFEw~yP~lA~~cr~kg~pYP~Lde~G 49 (57)
T PF12105_consen 23 LFEWGYPVLAKWCRRKGLPYPPLDEDG 49 (57)
T ss_dssp HHHHHHHHH------------------
T ss_pred HHcccCHHHHhhccccccccccccccc
Confidence 578999999999999999999887665
No 449
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=24.28 E-value=1.3e+02 Score=22.58 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhCC-cEEEEcCC
Q 018045 47 PETYRFFDEVEKHFGI-RIEYMFPD 70 (361)
Q Consensus 47 pet~~~v~~~~~~~g~-~i~~~~p~ 70 (361)
-...+++++++++||+ ++..++|.
T Consensus 19 ~~g~~~v~~i~~~~gI~diN~IKPG 43 (100)
T PF15608_consen 19 WQGWAEVERIAERYGISDINLIKPG 43 (100)
T ss_pred HHHHHHHHHHHHHhCCCCcccccCC
Confidence 4566778888888886 44455553
No 450
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=23.96 E-value=66 Score=27.76 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=32.2
Q ss_pred HHHHhHhCCcEEEEecchH-HHHHHHHHHHcCCCceEEEcc
Q 018045 2 DRALEKFGNDIAIAFSGAE-DVALIEYAHLTGRPFRVFSLD 41 (361)
Q Consensus 2 ~~~~~~~~~~i~vs~SGGK-DS~~l~l~~~~~~~i~v~~~d 41 (361)
+.+++. +.+++...+|++ |--++.|+++.+..+.+++.+
T Consensus 86 ~~aL~~-g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 86 EAALKA-GADIINDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHH-TSSEEEETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred HHHHHc-CcceEEecccccccchhhhhhhcCCCEEEEEecc
Confidence 456666 778999999998 777889999999888888888
No 451
>PHA02641 hypothetical protein; Provisional
Probab=23.52 E-value=51 Score=26.69 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=18.4
Q ss_pred cchHHHHHH-HHHHHcCCCceEEEccCC
Q 018045 17 SGAEDVALI-EYAHLTGRPFRVFSLDTG 43 (361)
Q Consensus 17 SGGKDS~~l-~l~~~~~~~i~v~~~dtg 43 (361)
-.||||+++ +|....-.++...|+-+.
T Consensus 23 ~~~~~~~~~~~~~~~~vnDfsL~F~YDt 50 (188)
T PHA02641 23 EAGKDSTMMDDLMNDLMNDFSLMFLYDT 50 (188)
T ss_pred ccccchhHHHHHHhhhhhhheeEEEeec
Confidence 389999999 676665455666665444
No 452
>PRK05939 hypothetical protein; Provisional
Probab=23.38 E-value=5.8e+02 Score=24.36 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=36.2
Q ss_pred CCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 9 GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 9 ~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
+..-.++||.|..+..+-+..-.++.-.|+..+ ..|+.+..+.+. .+++|++++.+.+.
T Consensus 61 g~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~--~~y~~t~~~~~~-l~~~G~~v~~v~~~ 119 (397)
T PRK05939 61 GGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQ--FLFGNTNSLFGT-LRGLGVEVTMVDAT 119 (397)
T ss_pred CCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECC--CccccHHHHHHH-HHhcCCEEEEECCC
Confidence 445678888776544332222233333455544 458888888865 46789998887553
No 453
>PRK06434 cystathionine gamma-lyase; Validated
Probab=23.33 E-value=4.8e+02 Score=24.88 Aligned_cols=60 Identities=27% Similarity=0.444 Sum_probs=39.2
Q ss_pred CCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 9 GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 9 ~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
+.+.+|+||.|..+..+-|..-..+.=.|+. +...|..|+.+......++|+++..+..+
T Consensus 78 g~~~av~~sSG~aAi~~al~all~~GD~Vl~--~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~ 137 (384)
T PRK06434 78 NAEHALSFSSGMGAITSAILSLIKKGKRILS--ISDLYGQTFYFFNKVLKTLGIHVDYIDTD 137 (384)
T ss_pred CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEE--ecCccchHHHHHHHHHHhcCcEEEEECCC
Confidence 4456789998886544322211222223443 33467889999999999999999888654
No 454
>PRK05968 hypothetical protein; Provisional
Probab=23.16 E-value=5.6e+02 Score=24.32 Aligned_cols=61 Identities=16% Similarity=0.351 Sum_probs=38.0
Q ss_pred hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 8 FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 8 ~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
++.+-.+.|++|.....+.+.....+.-.|+..+ ..|+.|+.+......++|++++.+...
T Consensus 76 ~g~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~ 136 (389)
T PRK05968 76 EGAEDARGFASGMAAISSTVLSFVEPGDRIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGR 136 (389)
T ss_pred hCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCC
Confidence 3434556778776543322222233323455544 368999998888899999998877554
No 455
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.15 E-value=72 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=18.4
Q ss_pred hHHHHHcCCCCCCCeEEEEeCCC
Q 018045 315 KEYAKQKLQLGSFPTILFFPKHS 337 (361)
Q Consensus 315 ~~l~~~~~~v~~~Pt~~~~~~g~ 337 (361)
...+ .+++|.++||+++...+.
T Consensus 159 ~~~a-~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLA-RELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHH-HHcCCCccCEEEEEeCCe
Confidence 4566 789999999999997765
No 456
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.13 E-value=6.9e+02 Score=24.12 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=37.6
Q ss_pred hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 8 FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 8 ~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
++..-.+.+++|-.+..+-+..-..+.-.|+..+ ..|+.+........+++|++++.+.+.
T Consensus 76 ~g~~~al~~~SG~~Ai~~al~all~pGd~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~ 136 (427)
T PRK05994 76 EGGTAALAVASGHAAQFLVFHTLLQPGDEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADAD 136 (427)
T ss_pred hCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEec--CcchhHHHHHHHHHHhcCcEEEEECCC
Confidence 3444577888776554332211133333455444 347888888888888999998877553
No 457
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=23.10 E-value=3.1e+02 Score=20.14 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=23.3
Q ss_pred cEEEEecchHHHH-HH----HHHHHcCCCceEEEccCCCC
Q 018045 11 DIAIAFSGAEDVA-LI----EYAHLTGRPFRVFSLDTGRL 45 (361)
Q Consensus 11 ~i~vs~SGGKDS~-~l----~l~~~~~~~i~v~~~dtg~~ 45 (361)
+|+|+++++..+- ++ +++...+.++.++++.....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~ 40 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPP 40 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCC
Confidence 4788888766653 33 55666677888888876543
No 458
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser
Probab=23.05 E-value=93 Score=24.85 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=23.0
Q ss_pred hHhCCcEEEEecchHHHHHH-HHHHHcCCCc-eEEEccCC
Q 018045 6 EKFGNDIAIAFSGAEDVALI-EYAHLTGRPF-RVFSLDTG 43 (361)
Q Consensus 6 ~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i-~v~~~dtg 43 (361)
+-.++.++|+++..-|...| +.+.+.+.+. +.-++||.
T Consensus 73 ~~l~~~~lv~hn~~fD~~~l~~~~~~~g~~~~~~~~idt~ 112 (156)
T cd06130 73 PFLGGSLVVAHNASFDRSVLRAALEAYGLPPPPYQYLCTV 112 (156)
T ss_pred HHhCCCEEEEeChHHhHHHHHHHHHHcCCCCCCCCEEEHH
Confidence 33456788899888887777 5666644321 22344553
No 459
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=22.92 E-value=1.1e+02 Score=28.21 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=32.2
Q ss_pred cEEEEecchHHHHHH-HHHHHcC----------------CCc-eEEEccCCCC-----cHHHHHHHHHHHHHhCCcEEE
Q 018045 11 DIAIAFSGAEDVALI-EYAHLTG----------------RPF-RVFSLDTGRL-----NPETYRFFDEVEKHFGIRIEY 66 (361)
Q Consensus 11 ~i~vs~SGGKDS~~l-~l~~~~~----------------~~i-~v~~~dtg~~-----~pet~~~v~~~~~~~g~~i~~ 66 (361)
-++++|| |..+|| .|+.+.. ..| .++|+|-|.. |+-..+.++.+++. |+.+++
T Consensus 195 ~~LiGFS--KGcvVLNqll~El~~~~~~~~~~~~~~~~l~~I~~~~wLD~Gh~g~~~~w~T~~~~L~~l~~~-~i~i~v 270 (303)
T PF10561_consen 195 LTLIGFS--KGCVVLNQLLYELHYLEELARVDKEIERFLSRISDMYWLDGGHNGGSNTWITDENVLKELAKL-GIRIHV 270 (303)
T ss_pred eEEEEec--CcchHHHHHHHHHHhhhcccCCchHHHHHHHhhheEEEeccCCCCCCCceecCHHHHHHHHhc-CcEEEE
Confidence 4788999 335666 6665533 123 5788999843 44444555555554 777765
No 460
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=22.35 E-value=57 Score=23.04 Aligned_cols=12 Identities=8% Similarity=0.847 Sum_probs=10.0
Q ss_pred HHHHHHHHhCCC
Q 018045 160 NDIWNFLRTMDV 171 (361)
Q Consensus 160 ~dv~~yi~~~~l 171 (361)
.-||+||+.+++
T Consensus 27 ~~lw~YIk~~~L 38 (76)
T PF02201_consen 27 KRLWQYIKENNL 38 (76)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHhcC
Confidence 468999999885
No 461
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=22.30 E-value=4.8e+02 Score=24.63 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=36.8
Q ss_pred hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 018045 8 FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 69 (361)
Q Consensus 8 ~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p 69 (361)
++..-++.+++|..+..+-+..-..+.-.|+..+ ..|+.|+.+.....+++|+++..+..
T Consensus 67 ~g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~--~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 67 EGAERAVATATGMSAIQAALMTLLQAGDHVVASR--SLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred hCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEec--CCcchHHHHHHHHHHHhCCEEEEECC
Confidence 3433456788888765442211122222344433 35788888888888999999877744
No 462
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=22.29 E-value=59 Score=30.00 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=24.1
Q ss_pred CCC-CccccCCCCCCCCCCCCCCCCCCCCCcCCC
Q 018045 171 VPI-NSLHSQGYISIGCEPCTRPVLPGQHEREGR 203 (361)
Q Consensus 171 lp~-~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr 203 (361)
+|. .++|-.-|.+.||.+|.+|.-.-+-++.||
T Consensus 274 ip~~~ev~p~pf~t~gC~~cnRP~~n~~~e~p~r 307 (339)
T COG2516 274 IPKVMEVPPSPFRTRGCPGCNRPYPNFMFELPGR 307 (339)
T ss_pred cccccCCCccccccCCCCCCCCCCcchHhhccCC
Confidence 555 566666899999999999875433467776
No 463
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=22.05 E-value=4.1e+02 Score=25.87 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=38.1
Q ss_pred hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 018045 8 FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 68 (361)
Q Consensus 8 ~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~ 68 (361)
++....+.||.|-....+.+..-..+.-.|+..+ ..|..|+..+.....++|+++..+.
T Consensus 82 ~g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~--~~y~~t~~~~~~~l~~~Gi~v~~vd 140 (436)
T PRK07812 82 EGGVAALLLASGQAAETFAILNLAGAGDHIVSSP--RLYGGTYNLFHYTLPKLGIEVSFVE 140 (436)
T ss_pred hCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeC--CcchHHHHHHHHHhhcCeEEEEEEC
Confidence 4445678888887764332222233333445444 3678999988888888998887774
No 464
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=21.36 E-value=3.8e+02 Score=21.22 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=9.8
Q ss_pred HHHHHHHHHcCCCceEEEccCCC
Q 018045 22 VALIEYAHLTGRPFRVFSLDTGR 44 (361)
Q Consensus 22 S~~l~l~~~~~~~i~v~~~dtg~ 44 (361)
+..|+.+++....+.++-+-.+.
T Consensus 12 ~qtLdVi~~~~d~f~v~~Lsa~~ 34 (129)
T PF02670_consen 12 TQTLDVIRKHPDKFEVVALSAGS 34 (129)
T ss_dssp HHHHHHHHHCTTTEEEEEEEESS
T ss_pred HHHHHHHHhCCCceEEEEEEcCC
Confidence 33444444444344444333333
No 465
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=21.12 E-value=1.6e+02 Score=22.98 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=50.7
Q ss_pred HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhchh--hccccHHH
Q 018045 26 EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECC--RVRKVRPL 103 (361)
Q Consensus 26 ~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~cc--~~~K~~pl 103 (361)
.++....+ +++.+..|...+...+-+.++++++|+++... +. .+|. ++.+.+.++. ...-..+.
T Consensus 6 ~~L~~A~r--P~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t-~~---------~kg~--i~~~hp~~~G~~g~~~~~~~ 71 (137)
T PF00205_consen 6 DLLSSAKR--PVILAGRGARRSGAAEELRELAEKLGIPVATT-PM---------GKGV--IPEDHPLFLGYLGLFGSPAA 71 (137)
T ss_dssp HHHHH-SS--EEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEE-GG---------GTTS--STTTSTTEEEESCGGSCHHH
T ss_pred HHHHhCCC--EEEEEcCCcChhhHHHHHHHHHHHHCCCEEec-Cc---------cccc--cCCCCchhcccCCccCCHHH
Confidence 45555544 56777777666677888999999999998543 21 1222 2222332222 22234677
Q ss_pred HHHHccCC-EEEEeeeccCC
Q 018045 104 RRALKGLR-AWITGQRKDQS 122 (361)
Q Consensus 104 ~~~~~~~~-~~i~G~R~~Es 122 (361)
+.++++.| +++.|.|.++.
T Consensus 72 ~~~l~~aDlvl~iG~~~~~~ 91 (137)
T PF00205_consen 72 NEALEQADLVLAIGTRLSDF 91 (137)
T ss_dssp HHHHHHSSEEEEESSSSSTT
T ss_pred HHHhcCCCEEEEECCCCccc
Confidence 78888888 56689998884
No 466
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.99 E-value=79 Score=27.25 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=36.0
Q ss_pred HHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045 284 CQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330 (361)
Q Consensus 284 C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~ 330 (361)
+..++..+++|+++|.+.......=||.....++| .++..+.+|..
T Consensus 87 ~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la-~~Ltgk~IP~w 132 (214)
T KOG0324|consen 87 EDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELA-LQLTGKKIPSW 132 (214)
T ss_pred HHHHHHHHHHHHhhcCCceehhhhhccchhHHHHH-HHHcCCCccHH
Confidence 56778889999999988777788888888766777 77777777753
No 467
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=20.98 E-value=5.9e+02 Score=24.16 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=36.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 018045 9 GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 68 (361)
Q Consensus 9 ~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~ 68 (361)
+..-++.++||.....+-+..-..+.-.|+..+. .|+.++.....+....++++..+.
T Consensus 66 g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~--~y~~~~~~~~~~~~~~gi~v~~vd 123 (386)
T PRK08045 66 GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHD--CYGGSYRLFDSLAKRGCYRVLFVD 123 (386)
T ss_pred CCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCC--CcHHHHHHHHHHHhhCCeEEEEeC
Confidence 3334677888866443322222333335666664 478999988888888777776653
No 468
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=20.60 E-value=7.4e+02 Score=23.53 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=38.2
Q ss_pred hCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045 8 FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70 (361)
Q Consensus 8 ~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~ 70 (361)
++...++.+++|.....+-+..-..+.-.|+..+ ..|+.|+.........+|+++..+..+
T Consensus 72 ~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~--~~y~~t~~~~~~~~~~~G~~~~~vd~~ 132 (391)
T TIGR01328 72 EGTEAAVATSSGMGAIAATLLTILKAGDHLISDE--CLYGCTFALLEHALTKFGIQVDFINMA 132 (391)
T ss_pred hCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEec--CcchHHHHHHHHHHhcCCeEEEEECCC
Confidence 3445578888888754332222133333445433 347888888888888999988777554
No 469
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=20.39 E-value=3.5e+02 Score=25.12 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=52.0
Q ss_pred CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEEE------E-------e
Q 018045 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILF------F-------P 334 (361)
Q Consensus 269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~~------~-------~ 334 (361)
....||.+. |+.|++....++.+...-+ .+.++.||+.... ...+ .++.-..+|.+-+ | .
T Consensus 76 ~~~~lIELG---sG~~~Kt~~LL~aL~~~~~--~~~Y~plDIS~~~L~~a~-~~L~~~~~p~l~v~~l~gdy~~~l~~l~ 149 (319)
T TIGR03439 76 SGSMLVELG---SGNLRKVGILLEALERQKK--SVDYYALDVSRSELQRTL-AELPLGNFSHVRCAGLLGTYDDGLAWLK 149 (319)
T ss_pred CCCEEEEEC---CCchHHHHHHHHHHHhcCC--CceEEEEECCHHHHHHHH-HhhhhccCCCeEEEEEEecHHHHHhhcc
Confidence 344677775 6778888888888864322 4889999998652 1222 3333345665544 1 1
Q ss_pred C----CCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045 335 K----HSSKPIKYPS---ERRDVDSLMAFVDAL 360 (361)
Q Consensus 335 ~----g~~~~~~~~~---~~~~~~~l~~~i~~~ 360 (361)
+ +..+.+.+.| |..+.++...||+++
T Consensus 150 ~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~ 182 (319)
T TIGR03439 150 RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGF 182 (319)
T ss_pred cccccCCccEEEEeCccccCCCHHHHHHHHHHH
Confidence 1 1122444444 467888888888775
No 470
>PHA02053 hypothetical protein
Probab=20.14 E-value=1.4e+02 Score=22.22 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=15.0
Q ss_pred HHHhHhCCcEEEEec-chHHHHHHHHH
Q 018045 3 RALEKFGNDIAIAFS-GAEDVALIEYA 28 (361)
Q Consensus 3 ~~~~~~~~~i~vs~S-GGKDS~~l~l~ 28 (361)
.++..++ |+.+-| |.+||++-+|.
T Consensus 75 kayR~~~--VIysr~lGS~DsVmWnLM 99 (115)
T PHA02053 75 KAYRSWG--VIYSRSLGSYDSVMWNLM 99 (115)
T ss_pred HHHHhcC--eeeecCCCchhHHHHHHH
Confidence 3455552 555655 99999966543
No 471
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=20.11 E-value=7e+02 Score=23.36 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=37.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 018045 9 GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 69 (361)
Q Consensus 9 ~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p 69 (361)
+....+.++||.....+-+ .-..+.-.|+..+. .|+.|+...+...+++|+++..+..
T Consensus 66 g~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~--~y~~t~~~~~~~~~~~G~~v~~vd~ 123 (366)
T PRK08247 66 GGDQGFACSSGMAAIQLVM-SLFRSGDELIVSSD--LYGGTYRLFEEHWKKWNVRFVYVNT 123 (366)
T ss_pred CCCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecC--CcCcHHHHHHHHhhccCceEEEECC
Confidence 4345688998876543322 22233334555544 3788888888888899999887754
Done!