Query 018048
Match_columns 361
No_of_seqs 273 out of 2475
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:42:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02374 pyruvate dehydrogenas 100.0 4.6E-69 1E-73 540.5 31.0 351 1-353 1-352 (433)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 7.9E-69 1.7E-73 522.1 27.1 283 66-354 3-290 (358)
3 CHL00149 odpA pyruvate dehydro 100.0 5.4E-64 1.2E-68 492.4 27.5 272 83-354 16-287 (341)
4 TIGR03182 PDH_E1_alph_y pyruva 100.0 2.6E-62 5.7E-67 476.3 25.6 262 86-354 1-262 (315)
5 KOG0225 Pyruvate dehydrogenase 100.0 2.5E-61 5.3E-66 456.2 22.6 262 78-350 50-312 (394)
6 PLN02269 Pyruvate dehydrogenas 100.0 1.1E-60 2.3E-65 471.3 27.3 259 82-350 25-284 (362)
7 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.8E-58 3.9E-63 445.4 25.5 256 92-354 1-257 (293)
8 TIGR03181 PDH_E1_alph_x pyruva 100.0 2.4E-57 5.2E-62 445.8 24.4 255 82-353 19-274 (341)
9 PF00676 E1_dh: Dehydrogenase 100.0 7.8E-56 1.7E-60 428.2 21.6 252 93-353 1-253 (300)
10 KOG1182 Branched chain alpha-k 100.0 3.6E-52 7.8E-57 391.0 17.5 308 35-352 36-345 (432)
11 PRK09404 sucA 2-oxoglutarate d 100.0 1.2E-47 2.6E-52 412.4 27.1 273 66-350 170-472 (924)
12 cd02016 TPP_E1_OGDC_like Thiam 100.0 1.6E-45 3.4E-50 348.0 19.8 235 102-342 1-262 (265)
13 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 7.5E-42 1.6E-46 366.4 26.8 278 65-349 168-472 (929)
14 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.4E-29 3E-34 264.8 19.0 204 108-332 31-249 (581)
15 PRK12270 kgd alpha-ketoglutara 100.0 2.3E-27 4.9E-32 250.3 23.7 275 67-349 475-782 (1228)
16 cd02006 TPP_Gcl Thiamine pyrop 99.9 1E-25 2.2E-30 206.2 11.1 158 156-329 7-197 (202)
17 cd02013 TPP_Xsc_like Thiamine 99.9 1.4E-25 3.1E-30 204.4 11.3 157 156-329 3-182 (196)
18 cd02004 TPP_BZL_OCoD_HPCL Thia 99.9 1.4E-24 3.1E-29 193.4 11.9 147 160-325 2-171 (172)
19 cd02015 TPP_AHAS Thiamine pyro 99.9 1.1E-24 2.4E-29 196.7 10.9 150 158-327 2-175 (186)
20 KOG0450 2-oxoglutarate dehydro 99.9 1.3E-23 2.9E-28 214.1 16.3 261 67-335 230-516 (1017)
21 cd02010 TPP_ALS Thiamine pyrop 99.9 6.4E-24 1.4E-28 190.7 9.2 148 160-327 2-171 (177)
22 COG0028 IlvB Thiamine pyrophos 99.9 9E-24 2E-28 219.5 11.4 215 65-328 293-533 (550)
23 cd02003 TPP_IolD Thiamine pyro 99.9 1.6E-23 3.5E-28 192.2 11.8 148 162-329 4-187 (205)
24 COG0567 SucA 2-oxoglutarate de 99.9 1.8E-22 4E-27 213.3 20.4 262 67-337 157-443 (906)
25 cd02002 TPP_BFDC Thiamine pyro 99.9 2.7E-23 5.9E-28 185.8 11.2 148 158-325 2-178 (178)
26 cd02014 TPP_POX Thiamine pyrop 99.9 5E-23 1.1E-27 184.7 10.4 153 157-328 2-175 (178)
27 PRK06163 hypothetical protein; 99.9 2.9E-22 6.4E-27 183.7 14.3 169 157-350 13-193 (202)
28 cd02012 TPP_TK Thiamine pyroph 99.9 2.6E-22 5.6E-27 190.1 13.9 136 189-335 99-236 (255)
29 cd02001 TPP_ComE_PpyrDC Thiami 99.9 1.5E-22 3.2E-27 178.6 10.5 144 162-327 4-156 (157)
30 cd02005 TPP_PDC_IPDC Thiamine 99.9 3.5E-22 7.6E-27 180.3 11.6 152 157-328 2-176 (183)
31 cd02009 TPP_SHCHC_synthase Thi 99.9 1.3E-22 2.8E-27 181.8 8.6 144 161-325 5-174 (175)
32 TIGR01504 glyox_carbo_lig glyo 99.9 1.6E-22 3.6E-27 212.2 10.3 157 156-328 368-557 (588)
33 cd02008 TPP_IOR_alpha Thiamine 99.9 7.3E-22 1.6E-26 177.3 12.3 156 153-325 6-176 (178)
34 cd03372 TPP_ComE Thiamine pyro 99.9 2.5E-21 5.4E-26 174.3 15.5 134 193-350 40-176 (179)
35 KOG0451 Predicted 2-oxoglutara 99.9 1.4E-21 3E-26 195.8 15.1 272 64-340 130-439 (913)
36 TIGR03846 sulfopy_beta sulfopy 99.9 1.2E-21 2.6E-26 176.8 13.5 132 194-350 41-178 (181)
37 PRK12474 hypothetical protein; 99.9 5.7E-22 1.2E-26 205.1 11.5 150 156-325 340-518 (518)
38 PRK06154 hypothetical protein; 99.9 7.3E-22 1.6E-26 206.4 12.2 156 156-328 380-557 (565)
39 PRK09107 acetolactate synthase 99.9 5E-22 1.1E-26 208.8 11.0 153 156-328 379-556 (595)
40 cd02007 TPP_DXS Thiamine pyrop 99.9 1.6E-21 3.4E-26 178.0 12.7 122 192-330 72-194 (195)
41 PRK07418 acetolactate synthase 99.9 5.1E-22 1.1E-26 209.5 10.8 226 59-328 312-561 (616)
42 PRK08979 acetolactate synthase 99.9 6.8E-22 1.5E-26 206.9 10.7 154 156-329 371-549 (572)
43 PRK07586 hypothetical protein; 99.9 7E-22 1.5E-26 204.1 10.7 150 156-325 336-514 (514)
44 cd03371 TPP_PpyrDC Thiamine py 99.9 4.2E-21 9.1E-26 174.2 14.1 117 194-330 47-167 (188)
45 cd00568 TPP_enzymes Thiamine p 99.9 6.9E-22 1.5E-26 174.0 8.8 116 191-325 42-168 (168)
46 PRK05858 hypothetical protein; 99.9 1.3E-21 2.8E-26 203.6 11.7 153 156-328 357-532 (542)
47 TIGR02418 acolac_catab acetola 99.9 1.2E-21 2.6E-26 203.6 11.5 154 156-329 358-533 (539)
48 PRK07979 acetolactate synthase 99.9 1.1E-21 2.3E-26 205.5 11.0 156 156-328 371-550 (574)
49 PRK05899 transketolase; Review 99.9 4.9E-20 1.1E-24 194.8 22.8 158 190-352 113-279 (624)
50 PRK06965 acetolactate synthase 99.9 1.5E-21 3.3E-26 204.8 11.3 152 156-327 387-563 (587)
51 PRK06725 acetolactate synthase 99.9 1.6E-21 3.4E-26 204.1 11.3 152 156-327 372-546 (570)
52 PRK07525 sulfoacetaldehyde ace 99.9 9.3E-22 2E-26 206.5 9.4 178 156-351 385-586 (588)
53 PRK06466 acetolactate synthase 99.9 2E-21 4.3E-26 203.4 11.7 153 156-328 373-550 (574)
54 PRK11269 glyoxylate carboligas 99.9 1.6E-21 3.4E-26 204.8 10.9 158 156-329 369-559 (591)
55 PRK09124 pyruvate dehydrogenas 99.9 2.3E-21 4.9E-26 202.9 11.8 153 156-328 358-532 (574)
56 TIGR03457 sulphoacet_xsc sulfo 99.9 1.4E-21 3.1E-26 204.7 9.9 158 156-330 380-561 (579)
57 PRK06048 acetolactate synthase 99.8 2.5E-21 5.4E-26 202.1 11.5 153 156-328 365-540 (561)
58 PRK07524 hypothetical protein; 99.8 2.2E-21 4.7E-26 201.4 10.7 154 157-330 358-533 (535)
59 TIGR03393 indolpyr_decarb indo 99.8 1.9E-21 4.1E-26 202.1 10.1 152 156-327 355-528 (539)
60 PTZ00089 transketolase; Provis 99.8 5.5E-20 1.2E-24 195.1 21.3 157 191-351 112-278 (661)
61 PF02775 TPP_enzyme_C: Thiamin 99.8 8.4E-22 1.8E-26 172.2 6.1 115 191-323 24-153 (153)
62 PRK08273 thiamine pyrophosphat 99.8 2.5E-21 5.4E-26 203.6 10.9 155 156-329 365-549 (597)
63 PRK06456 acetolactate synthase 99.8 2.6E-21 5.5E-26 202.4 10.8 154 156-329 371-548 (572)
64 cd03375 TPP_OGFOR Thiamine pyr 99.8 5E-21 1.1E-25 174.3 11.2 135 173-326 29-184 (193)
65 TIGR02720 pyruv_oxi_spxB pyruv 99.8 5.5E-21 1.2E-25 200.2 13.0 154 156-329 358-535 (575)
66 CHL00099 ilvB acetohydroxyacid 99.8 2.9E-21 6.4E-26 202.6 10.9 152 156-327 382-556 (585)
67 PRK08617 acetolactate synthase 99.8 2.7E-21 5.8E-26 201.5 10.4 154 156-329 364-539 (552)
68 PLN02470 acetolactate synthase 99.8 2.8E-21 6E-26 202.8 10.6 153 156-328 376-559 (585)
69 PRK08527 acetolactate synthase 99.8 5.5E-21 1.2E-25 199.7 12.6 154 156-329 364-541 (563)
70 PRK06457 pyruvate dehydrogenas 99.8 3.4E-21 7.4E-26 200.7 10.7 153 156-328 346-521 (549)
71 PRK07710 acetolactate synthase 99.8 3.5E-21 7.5E-26 201.5 10.7 153 156-328 374-550 (571)
72 PRK06546 pyruvate dehydrogenas 99.8 4.8E-21 1E-25 200.8 11.7 153 156-328 358-532 (578)
73 PRK08978 acetolactate synthase 99.8 6.5E-21 1.4E-25 198.4 12.1 154 156-329 351-528 (548)
74 PRK08155 acetolactate synthase 99.8 7.4E-21 1.6E-25 198.7 11.9 153 156-328 369-545 (564)
75 PRK08611 pyruvate oxidase; Pro 99.8 5.5E-21 1.2E-25 200.2 10.9 154 156-329 358-533 (576)
76 PRK08322 acetolactate synthase 99.8 6.9E-21 1.5E-25 198.0 11.6 151 157-327 357-529 (547)
77 PRK12754 transketolase; Review 99.8 3.2E-20 6.9E-25 196.2 16.2 160 189-352 108-277 (663)
78 PRK08266 hypothetical protein; 99.8 1.1E-20 2.4E-25 196.4 11.9 156 157-331 352-530 (542)
79 PRK07282 acetolactate synthase 99.8 5.5E-21 1.2E-25 199.8 9.6 152 156-328 368-543 (566)
80 PRK06882 acetolactate synthase 99.8 1.2E-20 2.6E-25 197.4 11.4 154 156-329 371-549 (574)
81 cd03376 TPP_PFOR_porB_like Thi 99.8 1.6E-20 3.6E-25 176.0 10.9 166 152-334 6-208 (235)
82 PRK06112 acetolactate synthase 99.8 1.7E-20 3.6E-25 196.6 11.9 153 156-328 386-562 (578)
83 TIGR00232 tktlase_bact transke 99.8 8.2E-20 1.8E-24 193.6 17.0 159 189-352 104-273 (653)
84 cd02011 TPP_PK Thiamine pyroph 99.8 5.1E-20 1.1E-24 170.7 13.1 167 123-313 2-174 (227)
85 PRK07789 acetolactate synthase 99.8 1.4E-20 3.1E-25 198.4 10.3 153 156-328 397-578 (612)
86 PLN02573 pyruvate decarboxylas 99.8 1.8E-20 3.9E-25 196.4 10.8 151 156-327 379-553 (578)
87 PRK07092 benzoylformate decarb 99.8 4E-20 8.7E-25 191.8 12.5 152 156-326 358-530 (530)
88 PRK08199 thiamine pyrophosphat 99.8 2.6E-20 5.5E-25 194.4 10.7 153 156-328 366-540 (557)
89 PRK09628 oorB 2-oxoglutarate-a 99.8 6.4E-20 1.4E-24 175.6 12.4 178 156-354 25-227 (277)
90 TIGR00118 acolac_lg acetolacta 99.8 2.6E-20 5.7E-25 194.2 10.5 153 156-328 362-538 (558)
91 PRK06276 acetolactate synthase 99.8 2.9E-20 6.4E-25 195.1 10.5 152 156-327 364-544 (586)
92 TIGR03254 oxalate_oxc oxalyl-C 99.8 5.1E-20 1.1E-24 192.0 11.9 153 156-328 365-540 (554)
93 PRK12753 transketolase; Review 99.8 1.2E-18 2.7E-23 184.7 22.1 142 189-334 108-254 (663)
94 PRK05444 1-deoxy-D-xylulose-5- 99.8 4.5E-19 9.8E-24 186.0 17.8 135 190-334 112-250 (580)
95 PRK08327 acetolactate synthase 99.8 1.4E-19 3E-24 189.4 13.7 158 156-326 384-567 (569)
96 PRK07064 hypothetical protein; 99.8 8E-20 1.7E-24 190.0 11.7 147 160-326 359-528 (544)
97 TIGR03394 indol_phenyl_DC indo 99.8 6.1E-20 1.3E-24 190.8 9.6 151 156-327 355-522 (535)
98 KOG4166 Thiamine pyrophosphate 99.8 6.4E-20 1.4E-24 179.7 9.1 154 156-329 471-650 (675)
99 PRK09259 putative oxalyl-CoA d 99.8 1.8E-19 3.8E-24 188.6 13.1 153 156-329 372-549 (569)
100 PLN02790 transketolase 99.8 5.7E-19 1.2E-23 187.3 16.7 141 189-334 99-246 (654)
101 TIGR00204 dxs 1-deoxy-D-xylulo 99.8 1.4E-18 3.1E-23 183.2 18.6 198 117-334 38-282 (617)
102 PRK05778 2-oxoglutarate ferred 99.8 6E-19 1.3E-23 170.7 13.8 142 193-353 68-228 (301)
103 COG3959 Transketolase, N-termi 99.8 7.3E-18 1.6E-22 153.8 19.6 128 189-327 113-242 (243)
104 cd02018 TPP_PFOR Thiamine pyro 99.8 2.2E-19 4.8E-24 168.5 9.8 160 155-329 9-206 (237)
105 PRK07449 2-succinyl-5-enolpyru 99.8 2.7E-19 5.8E-24 187.0 9.3 152 156-327 375-550 (568)
106 cd02017 TPP_E1_EcPDC_like Thia 99.8 4.4E-17 9.6E-22 161.1 23.7 160 190-353 113-351 (386)
107 TIGR03297 Ppyr-DeCO2ase phosph 99.8 5E-18 1.1E-22 168.2 14.0 167 157-346 172-354 (361)
108 PRK12571 1-deoxy-D-xylulose-5- 99.7 4.4E-17 9.5E-22 172.5 18.8 198 117-333 46-290 (641)
109 PRK11867 2-oxoglutarate ferred 99.7 5.4E-18 1.2E-22 163.1 10.4 116 194-326 68-202 (286)
110 PRK11869 2-oxoacid ferredoxin 99.7 6.4E-18 1.4E-22 161.8 9.7 118 192-326 57-193 (280)
111 PRK11866 2-oxoacid ferredoxin 99.7 1.8E-17 3.9E-22 158.7 12.1 118 192-326 56-192 (279)
112 TIGR03336 IOR_alpha indolepyru 99.7 3.1E-17 6.7E-22 172.6 13.2 162 147-325 352-529 (595)
113 TIGR02177 PorB_KorB 2-oxoacid: 99.7 2.7E-17 5.9E-22 158.0 11.4 116 193-326 51-186 (287)
114 TIGR00759 aceE pyruvate dehydr 99.7 9.1E-16 2E-20 163.7 24.0 171 179-352 173-421 (885)
115 TIGR03186 AKGDH_not_PDH alpha- 99.7 1.2E-15 2.6E-20 164.3 24.4 258 86-351 71-420 (889)
116 PF00456 Transketolase_N: Tran 99.7 4.7E-17 1E-21 159.6 12.1 156 190-350 106-272 (332)
117 PLN02234 1-deoxy-D-xylulose-5- 99.7 1.2E-15 2.7E-20 160.4 22.4 200 116-334 103-329 (641)
118 PLN02582 1-deoxy-D-xylulose-5- 99.7 5.6E-16 1.2E-20 164.1 18.8 197 117-334 71-328 (677)
119 PRK11864 2-ketoisovalerate fer 99.7 3.7E-16 7.9E-21 150.7 15.9 169 145-326 14-207 (300)
120 PRK13012 2-oxoacid dehydrogena 99.7 3.4E-15 7.4E-20 161.3 22.0 258 86-351 85-434 (896)
121 PRK09405 aceE pyruvate dehydro 99.6 2.7E-14 5.8E-19 153.9 22.1 258 86-351 77-426 (891)
122 PLN02980 2-oxoglutarate decarb 99.6 5E-16 1.1E-20 179.1 9.5 117 191-328 755-891 (1655)
123 KOG1185 Thiamine pyrophosphate 99.6 2.1E-15 4.5E-20 150.4 11.6 232 56-328 296-562 (571)
124 PRK05261 putative phosphoketol 99.6 5.7E-15 1.2E-19 157.4 15.7 202 115-330 48-287 (785)
125 COG0021 TktA Transketolase [Ca 99.6 8.3E-15 1.8E-19 150.8 16.2 155 190-349 111-276 (663)
126 COG1154 Dxs Deoxyxylulose-5-ph 99.6 2.5E-14 5.5E-19 146.5 18.0 206 115-339 40-294 (627)
127 PF13292 DXP_synthase_N: 1-deo 99.6 9.1E-15 2E-19 137.4 12.3 216 82-325 11-270 (270)
128 COG3961 Pyruvate decarboxylase 99.5 4.5E-14 9.7E-19 142.3 11.0 152 158-328 364-537 (557)
129 COG3962 Acetolactate synthase 99.5 3.1E-13 6.7E-18 134.4 12.1 117 192-328 441-577 (617)
130 KOG0523 Transketolase [Carbohy 99.5 4.2E-13 9.1E-18 137.0 12.4 132 191-332 114-247 (632)
131 PLN02225 1-deoxy-D-xylulose-5- 99.4 2.2E-12 4.7E-17 136.5 17.2 195 115-329 115-367 (701)
132 COG3960 Glyoxylate carboligase 99.3 2.8E-12 6.1E-17 123.5 7.2 162 156-334 369-564 (592)
133 PRK11865 pyruvate ferredoxin o 99.3 8.9E-11 1.9E-15 113.5 15.4 126 188-326 62-211 (299)
134 KOG1184 Thiamine pyrophosphate 99.1 2.5E-10 5.4E-15 115.2 8.7 118 192-326 412-539 (561)
135 COG2609 AceE Pyruvate dehydrog 98.9 1.5E-07 3.4E-12 98.0 21.6 137 191-331 188-396 (887)
136 COG1013 PorB Pyruvate:ferredox 98.9 2.9E-08 6.2E-13 96.2 13.0 117 192-325 67-203 (294)
137 PF09364 XFP_N: XFP N-terminal 98.7 8E-09 1.7E-13 101.1 4.6 104 194-312 139-251 (379)
138 COG4231 Indolepyruvate ferredo 98.3 3.2E-06 7E-11 87.9 9.7 157 150-324 379-552 (640)
139 COG1165 MenD 2-succinyl-6-hydr 98.1 4.1E-06 8.9E-11 86.1 6.7 113 198-330 425-550 (566)
140 cd03377 TPP_PFOR_PNO Thiamine 98.1 1.6E-05 3.5E-10 78.8 9.7 98 223-326 150-267 (365)
141 COG3957 Phosphoketolase [Carbo 98.0 1.7E-05 3.7E-10 83.3 8.6 175 115-307 59-259 (793)
142 PRK13030 2-oxoacid ferredoxin 97.9 3.7E-05 8.1E-10 86.3 10.1 155 150-323 426-600 (1159)
143 PRK09193 indolepyruvate ferred 97.8 8E-05 1.7E-09 83.5 10.6 134 174-323 460-614 (1165)
144 PRK13029 2-oxoacid ferredoxin 97.7 0.00016 3.5E-09 81.1 9.7 135 174-323 474-628 (1186)
145 TIGR02176 pyruv_ox_red pyruvat 97.1 0.002 4.3E-08 73.3 9.6 96 225-326 952-1067(1165)
146 PF02776 TPP_enzyme_N: Thiamin 96.8 0.0098 2.1E-07 52.8 10.1 107 201-325 52-161 (172)
147 cd06586 TPP_enzyme_PYR Pyrimid 96.8 0.0073 1.6E-07 51.9 8.6 105 200-323 47-152 (154)
148 TIGR03845 sulfopyru_alph sulfo 96.8 0.013 2.8E-07 51.8 10.1 108 198-324 44-153 (157)
149 cd07039 TPP_PYR_POX Pyrimidine 96.8 0.009 1.9E-07 53.0 9.2 94 225-325 65-158 (164)
150 cd07035 TPP_PYR_POX_like Pyrim 96.7 0.0081 1.8E-07 52.1 8.5 107 200-323 46-153 (155)
151 cd07038 TPP_PYR_PDC_IPDC_like 96.3 0.025 5.5E-07 50.0 8.7 93 226-323 60-160 (162)
152 cd07034 TPP_PYR_PFOR_IOR-alpha 96.1 0.025 5.4E-07 49.3 7.8 91 226-323 67-158 (160)
153 cd07037 TPP_PYR_MenD Pyrimidin 95.6 0.085 1.9E-06 46.8 8.9 108 202-324 49-161 (162)
154 TIGR03297 Ppyr-DeCO2ase phosph 95.4 0.041 8.9E-07 55.1 7.2 115 196-325 34-152 (361)
155 PRK08659 2-oxoglutarate ferred 95.2 0.13 2.9E-06 51.7 9.9 116 200-334 60-178 (376)
156 PRK08611 pyruvate oxidase; Pro 94.9 0.15 3.2E-06 54.0 9.7 95 225-326 70-164 (576)
157 PRK07119 2-ketoisovalerate fer 94.5 0.24 5.2E-06 49.4 9.7 114 200-332 60-176 (352)
158 PRK06457 pyruvate dehydrogenas 94.4 0.23 4.9E-06 52.3 9.9 95 225-326 66-160 (549)
159 TIGR03254 oxalate_oxc oxalyl-C 94.4 0.17 3.8E-06 53.1 9.0 97 225-326 67-164 (554)
160 COG0028 IlvB Thiamine pyrophos 94.3 0.17 3.6E-06 53.5 8.6 109 201-326 52-161 (550)
161 PRK07524 hypothetical protein; 93.8 0.31 6.8E-06 51.0 9.5 97 225-326 66-164 (535)
162 PRK07064 hypothetical protein; 93.8 0.31 6.6E-06 51.1 9.3 110 202-326 55-166 (544)
163 PRK07525 sulfoacetaldehyde ace 93.7 0.34 7.4E-06 51.4 9.6 94 225-326 70-164 (588)
164 PRK07418 acetolactate synthase 93.7 0.3 6.6E-06 52.1 9.2 95 225-326 87-182 (616)
165 PRK09259 putative oxalyl-CoA d 93.6 0.34 7.4E-06 51.1 9.4 96 225-326 74-171 (569)
166 PRK07586 hypothetical protein; 93.6 0.32 6.9E-06 50.6 9.0 96 225-327 66-162 (514)
167 PRK08155 acetolactate synthase 93.5 0.39 8.4E-06 50.6 9.6 106 202-326 65-173 (564)
168 TIGR01504 glyox_carbo_lig glyo 93.5 0.37 8E-06 51.2 9.4 96 224-326 66-164 (588)
169 PRK08199 thiamine pyrophosphat 93.5 0.53 1.2E-05 49.5 10.5 95 225-326 73-168 (557)
170 PRK06466 acetolactate synthase 93.4 0.36 7.8E-06 51.0 9.1 95 225-326 69-164 (574)
171 PRK06456 acetolactate synthase 93.4 0.56 1.2E-05 49.5 10.5 94 226-326 71-165 (572)
172 TIGR03457 sulphoacet_xsc sulfo 93.4 0.39 8.5E-06 50.8 9.4 94 225-326 66-160 (579)
173 PRK06112 acetolactate synthase 93.4 0.41 8.9E-06 50.6 9.5 95 225-326 76-171 (578)
174 PRK07979 acetolactate synthase 93.3 0.37 8.1E-06 50.9 9.0 109 202-327 56-165 (574)
175 PRK06725 acetolactate synthase 93.3 0.37 8E-06 51.0 8.9 108 202-326 66-174 (570)
176 PLN02470 acetolactate synthase 93.1 0.37 7.9E-06 51.1 8.7 96 224-326 77-173 (585)
177 PRK11269 glyoxylate carboligas 93.0 0.51 1.1E-05 50.1 9.6 94 226-326 71-165 (591)
178 PRK08978 acetolactate synthase 93.0 0.5 1.1E-05 49.6 9.4 107 202-326 52-160 (548)
179 PRK07789 acetolactate synthase 92.9 0.48 1E-05 50.6 9.2 96 224-326 95-191 (612)
180 PRK08322 acetolactate synthase 92.9 0.46 9.9E-06 49.8 8.8 108 202-326 52-160 (547)
181 PRK07710 acetolactate synthase 92.9 0.5 1.1E-05 49.9 9.2 109 201-326 66-175 (571)
182 PRK07282 acetolactate synthase 92.8 0.53 1.1E-05 49.8 9.2 94 225-326 75-170 (566)
183 PRK12474 hypothetical protein; 92.7 0.6 1.3E-05 48.7 9.4 96 225-327 70-166 (518)
184 TIGR00118 acolac_lg acetolacta 92.7 0.62 1.3E-05 49.0 9.6 95 225-326 66-161 (558)
185 TIGR03710 OAFO_sf 2-oxoacid:ac 92.7 0.63 1.4E-05 49.3 9.6 169 118-327 192-362 (562)
186 PRK09124 pyruvate dehydrogenas 92.7 0.74 1.6E-05 48.7 10.1 96 224-326 65-162 (574)
187 PRK08366 vorA 2-ketoisovalerat 92.6 1.3 2.8E-05 44.9 11.4 113 200-333 61-173 (390)
188 PRK08617 acetolactate synthase 92.6 0.56 1.2E-05 49.3 9.2 94 225-326 69-164 (552)
189 cd07033 TPP_PYR_DXS_TK_like Py 92.6 0.5 1.1E-05 41.3 7.4 101 201-323 52-154 (156)
190 PRK09627 oorA 2-oxoglutarate-a 92.6 0.72 1.6E-05 46.5 9.4 116 200-333 59-176 (375)
191 PRK06276 acetolactate synthase 92.5 0.54 1.2E-05 49.9 8.9 95 225-326 65-160 (586)
192 TIGR03394 indol_phenyl_DC indo 92.5 0.56 1.2E-05 49.3 8.9 99 224-327 64-166 (535)
193 PRK08979 acetolactate synthase 92.5 0.53 1.1E-05 49.8 8.7 108 202-326 56-164 (572)
194 PRK08266 hypothetical protein; 92.5 0.62 1.4E-05 48.8 9.2 109 203-327 58-169 (542)
195 PRK09107 acetolactate synthase 92.4 0.5 1.1E-05 50.3 8.5 95 225-326 76-171 (595)
196 TIGR02720 pyruv_oxi_spxB pyruv 92.3 0.65 1.4E-05 49.2 9.2 95 224-326 64-159 (575)
197 PRK08273 thiamine pyrophosphat 92.3 0.48 1E-05 50.4 8.1 96 225-327 69-165 (597)
198 PRK06965 acetolactate synthase 92.3 0.76 1.7E-05 48.8 9.6 108 202-326 73-181 (587)
199 PRK06882 acetolactate synthase 92.0 0.73 1.6E-05 48.7 9.2 95 225-326 69-164 (574)
200 PRK06048 acetolactate synthase 92.0 0.82 1.8E-05 48.2 9.4 109 201-326 58-167 (561)
201 PF01855 POR_N: Pyruvate flavo 91.7 0.55 1.2E-05 44.1 6.9 113 200-334 48-162 (230)
202 PRK05858 hypothetical protein; 91.6 0.82 1.8E-05 48.0 8.9 108 202-326 56-164 (542)
203 PRK07092 benzoylformate decarb 91.6 1.3 2.9E-05 46.2 10.4 108 202-326 62-171 (530)
204 PRK08327 acetolactate synthase 91.1 0.6 1.3E-05 49.4 7.3 97 225-326 77-181 (569)
205 PRK08527 acetolactate synthase 90.8 1.1 2.3E-05 47.3 8.9 95 225-326 68-163 (563)
206 CHL00099 ilvB acetohydroxyacid 90.8 1.1 2.3E-05 47.6 8.9 94 225-326 78-173 (585)
207 TIGR00173 menD 2-succinyl-5-en 90.7 0.85 1.8E-05 46.5 7.8 110 202-326 52-166 (432)
208 PRK06546 pyruvate dehydrogenas 90.3 1.4 3E-05 46.8 9.2 96 224-326 65-162 (578)
209 TIGR02418 acolac_catab acetola 90.0 1.4 3.1E-05 46.1 9.0 95 225-326 63-158 (539)
210 PLN02573 pyruvate decarboxylas 89.7 1.5 3.2E-05 46.6 8.9 98 224-326 79-182 (578)
211 PRK08367 porA pyruvate ferredo 89.5 3.9 8.4E-05 41.5 11.3 112 200-332 62-175 (394)
212 COG0674 PorA Pyruvate:ferredox 89.0 2.3 5.1E-05 42.6 9.2 109 200-327 59-167 (365)
213 PRK09622 porA pyruvate flavodo 88.8 2.3 5.1E-05 43.2 9.2 108 200-327 68-177 (407)
214 PRK06154 hypothetical protein; 88.5 1.9 4.2E-05 45.6 8.6 93 225-326 81-176 (565)
215 KOG4166 Thiamine pyrophosphate 86.6 3.1 6.8E-05 42.5 8.2 106 203-325 144-250 (675)
216 TIGR00173 menD 2-succinyl-5-en 86.6 0.35 7.6E-06 49.3 1.7 54 156-209 366-431 (432)
217 COG4032 Predicted thiamine-pyr 86.1 1.4 3.1E-05 38.4 4.9 105 200-323 54-161 (172)
218 TIGR03393 indolpyr_decarb indo 83.6 5.7 0.00012 41.7 9.1 96 225-327 65-167 (539)
219 TIGR03336 IOR_alpha indolepyru 83.6 6.2 0.00013 42.1 9.5 162 122-332 5-168 (595)
220 PLN02980 2-oxoglutarate decarb 83.4 3.2 6.9E-05 49.6 7.8 108 202-324 353-465 (1655)
221 PF02779 Transket_pyr: Transke 82.8 4.6 0.0001 35.9 7.0 103 200-323 60-170 (178)
222 cd01460 vWA_midasin VWA_Midasi 82.3 21 0.00046 34.3 11.7 85 226-311 166-258 (266)
223 TIGR00204 dxs 1-deoxy-D-xylulo 81.7 5.4 0.00012 42.8 8.2 90 224-323 376-467 (617)
224 TIGR00232 tktlase_bact transke 81.4 5.2 0.00011 43.3 7.9 81 235-323 430-512 (653)
225 cd07036 TPP_PYR_E1-PDHc-beta_l 79.5 7 0.00015 34.8 6.9 88 224-322 67-164 (167)
226 PTZ00089 transketolase; Provis 79.5 7.1 0.00015 42.3 8.2 90 224-323 428-519 (661)
227 PLN02683 pyruvate dehydrogenas 74.2 14 0.0003 37.0 8.1 99 200-323 86-195 (356)
228 PRK11892 pyruvate dehydrogenas 73.4 13 0.00028 38.6 7.8 99 201-322 202-309 (464)
229 COG3958 Transketolase, C-termi 72.2 15 0.00033 35.8 7.4 102 201-323 62-165 (312)
230 PRK07449 2-succinyl-5-enolpyru 71.5 11 0.00025 39.6 7.1 108 202-326 61-174 (568)
231 PRK05899 transketolase; Review 71.0 14 0.0003 39.7 7.7 88 224-323 392-483 (624)
232 COG3960 Glyoxylate carboligase 70.8 7.5 0.00016 38.7 5.0 112 222-339 65-178 (592)
233 PRK12571 1-deoxy-D-xylulose-5- 70.8 16 0.00035 39.5 8.1 90 224-324 385-477 (641)
234 PLN02790 transketolase 70.7 16 0.00035 39.5 8.2 75 242-323 433-509 (654)
235 PRK05444 1-deoxy-D-xylulose-5- 70.2 19 0.0004 38.4 8.4 91 224-323 345-436 (580)
236 PLN02225 1-deoxy-D-xylulose-5- 67.4 22 0.00047 38.9 8.2 92 223-323 446-538 (701)
237 PLN02234 1-deoxy-D-xylulose-5- 66.8 20 0.00042 38.9 7.7 90 224-322 423-513 (641)
238 TIGR02176 pyruv_ox_red pyruvat 66.2 50 0.0011 38.4 11.2 113 200-332 63-175 (1165)
239 PRK12315 1-deoxy-D-xylulose-5- 66.1 20 0.00043 38.3 7.5 89 224-323 344-434 (581)
240 PLN02582 1-deoxy-D-xylulose-5- 65.1 29 0.00062 37.9 8.6 91 223-323 421-513 (677)
241 PRK12753 transketolase; Review 64.0 26 0.00057 38.0 8.1 89 225-323 428-518 (663)
242 PRK13010 purU formyltetrahydro 58.6 23 0.0005 34.4 5.9 55 223-296 93-150 (289)
243 PRK12754 transketolase; Review 56.9 40 0.00086 36.7 7.9 81 235-323 436-518 (663)
244 smart00861 Transket_pyr Transk 55.5 46 0.001 28.9 6.9 100 201-323 62-164 (168)
245 COG1154 Dxs Deoxyxylulose-5-ph 54.6 56 0.0012 35.1 8.3 91 223-323 381-473 (627)
246 TIGR00655 PurU formyltetrahydr 53.7 33 0.00071 33.2 6.0 55 223-296 84-141 (280)
247 PRK13683 hypothetical protein; 52.2 26 0.00056 27.9 4.1 42 285-330 12-53 (87)
248 COG0021 TktA Transketolase [Ca 52.0 44 0.00095 36.0 7.0 77 240-323 440-518 (663)
249 PRK06027 purU formyltetrahydro 50.0 43 0.00094 32.4 6.3 56 222-296 88-146 (286)
250 PLN02331 phosphoribosylglycina 49.9 52 0.0011 30.4 6.5 55 225-296 1-58 (207)
251 COG0299 PurN Folate-dependent 49.6 56 0.0012 30.1 6.5 84 225-326 2-88 (200)
252 COG3453 Uncharacterized protei 46.8 49 0.0011 28.2 5.2 75 242-325 18-96 (130)
253 PTZ00182 3-methyl-2-oxobutanat 45.2 68 0.0015 32.1 7.0 98 201-322 95-202 (355)
254 COG1303 Uncharacterized protei 45.1 43 0.00094 29.9 4.8 48 275-325 19-66 (179)
255 PF04273 DUF442: Putative phos 44.5 59 0.0013 26.9 5.4 76 242-325 17-95 (110)
256 PF13519 VWA_2: von Willebrand 43.1 88 0.0019 26.1 6.6 61 224-294 99-159 (172)
257 PRK05647 purN phosphoribosylgl 43.0 80 0.0017 28.9 6.6 57 225-297 3-61 (200)
258 COG2205 KdpD Osmosensitive K+ 40.6 70 0.0015 35.6 6.6 87 223-316 248-334 (890)
259 PRK09212 pyruvate dehydrogenas 40.1 96 0.0021 30.5 7.1 102 201-325 64-174 (327)
260 PRK00278 trpC indole-3-glycero 39.6 2.1E+02 0.0045 27.2 9.1 89 222-326 81-170 (260)
261 COG1240 ChlD Mg-chelatase subu 39.0 2.3E+02 0.0049 27.3 9.0 73 224-303 177-254 (261)
262 COG3172 NadR Predicted ATPase/ 38.3 52 0.0011 29.7 4.3 70 244-314 106-183 (187)
263 KOG1184 Thiamine pyrophosphate 36.6 74 0.0016 33.5 5.7 97 225-327 68-171 (561)
264 cd01453 vWA_transcription_fact 35.7 1.6E+02 0.0035 26.2 7.3 66 224-303 107-173 (183)
265 PRK13406 bchD magnesium chelat 33.8 2.9E+02 0.0062 29.7 9.9 98 197-307 472-581 (584)
266 PF06707 DUF1194: Protein of u 33.1 4E+02 0.0087 24.7 9.7 17 223-239 115-131 (205)
267 TIGR00639 PurN phosphoribosylg 32.5 1.3E+02 0.0029 27.2 6.2 55 225-295 2-58 (190)
268 COG0777 AccD Acetyl-CoA carbox 31.9 1.4E+02 0.0031 29.0 6.4 67 193-263 130-206 (294)
269 PF01380 SIS: SIS domain SIS d 31.4 1.9E+02 0.0041 23.2 6.6 38 222-261 52-89 (131)
270 PRK06988 putative formyltransf 31.1 1.3E+02 0.0029 29.3 6.4 60 228-296 5-64 (312)
271 PRK10490 sensor protein KdpD; 30.2 1.6E+02 0.0035 33.2 7.6 85 224-316 251-336 (895)
272 COG2515 Acd 1-aminocyclopropan 28.0 3E+02 0.0066 27.2 8.0 114 223-351 62-177 (323)
273 COG4231 Indolepyruvate ferredo 28.0 3.5E+02 0.0075 29.4 9.1 160 122-327 16-177 (640)
274 PF13899 Thioredoxin_7: Thiore 27.8 50 0.0011 25.0 2.3 19 305-323 6-24 (82)
275 smart00115 CASc Caspase, inter 26.9 1.9E+02 0.004 27.1 6.4 46 278-323 34-79 (241)
276 cd01451 vWA_Magnesium_chelatas 26.2 4.3E+02 0.0094 22.9 10.0 68 225-301 99-172 (178)
277 CHL00144 odpB pyruvate dehydro 24.5 2.4E+02 0.0052 27.8 7.0 32 287-322 139-171 (327)
278 PF05209 MinC_N: Septum format 24.5 1.4E+02 0.0031 23.8 4.5 45 282-326 9-55 (99)
279 cd05710 SIS_1 A subgroup of th 22.9 1.5E+02 0.0032 24.3 4.4 40 222-263 46-85 (120)
280 TIGR02442 Cob-chelat-sub cobal 22.8 3.2E+02 0.0069 29.5 8.0 88 198-294 538-633 (633)
281 PLN02828 formyltetrahydrofolat 22.8 3.1E+02 0.0068 26.4 7.1 60 222-295 69-131 (268)
282 KOG0341 DEAD-box protein abstr 22.1 8.9E+02 0.019 25.1 10.3 112 225-352 381-509 (610)
283 PRK13011 formyltetrahydrofolat 21.9 2.4E+02 0.0051 27.4 6.2 53 224-295 90-145 (286)
284 cd00640 Trp-synth-beta_II Tryp 21.9 3.9E+02 0.0084 24.5 7.5 40 245-296 66-105 (244)
285 TIGR00460 fmt methionyl-tRNA f 21.4 2.8E+02 0.0062 27.0 6.7 64 228-297 3-66 (313)
286 COG0075 Serine-pyruvate aminot 21.0 5.7E+02 0.012 26.0 8.9 58 224-296 55-112 (383)
287 cd05017 SIS_PGI_PMI_1 The memb 20.9 1.6E+02 0.0034 24.0 4.2 34 224-259 44-77 (119)
288 PF11814 DUF3335: Peptidase_C3 20.8 2.4E+02 0.0051 26.3 5.6 88 228-330 46-143 (207)
289 PTZ00254 40S ribosomal protein 20.5 4.2E+02 0.009 25.3 7.4 22 242-263 131-152 (249)
290 cd08663 DAP_dppA_1 Peptidase M 20.4 1.8E+02 0.0038 28.1 4.9 31 295-325 186-225 (266)
291 KOG1201 Hydroxysteroid 17-beta 20.4 8.3E+02 0.018 24.0 11.0 106 224-352 37-145 (300)
292 TIGR01139 cysK cysteine syntha 20.4 3.1E+02 0.0068 26.1 6.7 59 247-319 75-133 (298)
293 COG4573 GatZ Predicted tagatos 20.2 73 0.0016 31.9 2.2 37 304-340 29-68 (426)
294 cd01455 vWA_F11C1-5a_type Von 20.1 6.8E+02 0.015 22.9 8.4 71 223-306 110-183 (191)
No 1
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=4.6e-69 Score=540.54 Aligned_cols=351 Identities=80% Similarity=1.237 Sum_probs=315.8
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCCCCCCCcccCccceeecccccCCCCCCcccccchhHHHHHHhhhcc-cc
Q 018048 1 MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVK-SI 79 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (361)
|+++|..+++.+++|.+++. .+....+++...++++.|+|++++.+.......+ +..++.++..+.........+ +.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (433)
T PLN02374 1 MAAAFAATSLLVPVPARSSR-DDAPSSPLRGALKRSSAFTGSTSKLSSLRGLNAA-NGRRRSTVVAVSAVVKEKNSKASA 78 (433)
T ss_pred CccccccccccccccccccC-CCCCCCccccccccchhhhccccccccccCcccc-ccchhcchhcccccccccCCCCCC
Confidence 78889999999999999886 6777788899999999999999997533333333 567777765544443222222 34
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCH
Q 018048 80 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA 159 (361)
Q Consensus 80 ~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~ 159 (361)
.++.+++++++++|+.|+++|.||+++.+++++||++|++|++.||||+++|++.+|+++||++++||+|++.|++|+++
T Consensus 79 ~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~ 158 (433)
T PLN02374 79 SDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPA 158 (433)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCH
Confidence 55688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCc
Q 018048 160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 239 (361)
Q Consensus 160 ~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g 239 (361)
.++|.|++++.+|.+.|++|++|+.+++.++.+.+++||+++|.|+|+|+|.|++++.+++..++++|||++|||++++|
T Consensus 159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG 238 (433)
T PLN02374 159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238 (433)
T ss_pred HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence 99999999999999999999999999999999999999999999999999999987555444578999999999999999
Q ss_pred chHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCE
Q 018048 240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319 (361)
Q Consensus 240 ~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~ 319 (361)
.|+|+||+|+.|+|||||||+||+|+++++...++..++++++|++||+++++|||+|+++|++++++|+++++++++|+
T Consensus 239 ~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~ 318 (433)
T PLN02374 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPT 318 (433)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999888887788999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCCCCHHHHHhHHHhhh
Q 018048 320 LVECETYRFRGHSLADPDELRDPGEHLVLVLFIF 353 (361)
Q Consensus 320 lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~~~~ 353 (361)
|||+.|||..||+++|++.||+++|++.|...++
T Consensus 319 LIe~~tyR~~GHs~~D~~~YR~~~e~~~~~~~DP 352 (433)
T PLN02374 319 LVECETYRFRGHSLADPDELRDPAEKAHYAARDP 352 (433)
T ss_pred EEEEEEEecCCcCCCCccccCCHHHHHHHHcCCc
Confidence 9999999999999999999999999999986554
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=7.9e-69 Score=522.11 Aligned_cols=283 Identities=47% Similarity=0.744 Sum_probs=263.4
Q ss_pred hHHHHHHhhhcccccC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCC-cE
Q 018048 66 AVSEVVKEKKVKSISN---LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DS 141 (361)
Q Consensus 66 ~~~~~~~~~~~~~~~~---~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~-D~ 141 (361)
+.++++.++..+.+.. ..+++++++++|++|+++|.||+++.+++++||+.||+|++.||||+++|++.+|+++ ||
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~ 82 (358)
T COG1071 3 LIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDW 82 (358)
T ss_pred ceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCE
Confidence 4556666666664433 3689999999999999999999999999999999999999999999999999999965 99
Q ss_pred EEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhc
Q 018048 142 VVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA 221 (361)
Q Consensus 142 v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~ 221 (361)
++++||+|++.|++|+++.++|.+++|+.+|+++|++|++|+++++.++.++++++|.++|.|+|+|+|.|+++
T Consensus 83 i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~------ 156 (358)
T COG1071 83 IFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRG------ 156 (358)
T ss_pred eecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 301 (361)
Q Consensus 222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v 301 (361)
..+++++|++|||+.++|+|||+||+|+.|+|||||||+||+|+||+++..|...+.+..+|.+||+|+++|||+|+++|
T Consensus 157 ~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~av 236 (358)
T COG1071 157 TKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAV 236 (358)
T ss_pred CCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHH
Confidence 14559999999999999999999999999999999999999999998887787777788899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCC-CCCCCHHHHHhHHHhhhc
Q 018048 302 REVAKEAIERARRGEGPTLVECETYRFRGHSLADP-DELRDPGEHLVLVLFIFC 354 (361)
Q Consensus 302 ~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp-~~yR~~~e~~~~~~~~~~ 354 (361)
++++++|+++||+++||+|||+.|||+.|||++|| +.||+++|++.|..-+|.
T Consensus 237 y~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~~DPi 290 (358)
T COG1071 237 YEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRDPI 290 (358)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhccChH
Confidence 99999999999999999999999999999999986 899999999999974443
No 3
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=5.4e-64 Score=492.44 Aligned_cols=272 Identities=73% Similarity=1.157 Sum_probs=258.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHH
Q 018048 83 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAV 162 (361)
Q Consensus 83 ~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~ 162 (361)
.+++++++++|+.|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++|+++++||+|++.|++|+++.++
T Consensus 16 ~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~ 95 (341)
T CHL00149 16 NINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKNV 95 (341)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchH
Q 018048 163 MSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFF 242 (361)
Q Consensus 163 ~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~ 242 (361)
|.+++++.+|++.|++|++|+++++.++.+++++||+++|+|+|+++|.|++++..++..++++|||++|||++++|.|+
T Consensus 96 ~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~ 175 (341)
T CHL00149 96 MAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFF 175 (341)
T ss_pred HHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHH
Confidence 99999999999999999999999999999999999999999999999999886544444578999999999999999999
Q ss_pred HHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 018048 243 ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322 (361)
Q Consensus 243 eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIe 322 (361)
|+|++|++|+||+||||+||+|+++++...+...++++++|++||+++++|||+|++++++++++|+++++++++|+|||
T Consensus 176 Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe 255 (341)
T CHL00149 176 ECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIE 255 (341)
T ss_pred HHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999887777789999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCHHHHHhHHHhhhc
Q 018048 323 CETYRFRGHSLADPDELRDPGEHLVLVLFIFC 354 (361)
Q Consensus 323 v~t~R~~gHs~~Dp~~yR~~~e~~~~~~~~~~ 354 (361)
+.|||+.||+++||+.||+++|++.|..-++.
T Consensus 256 v~tyR~~gHs~~D~~~YR~~~e~~~~~~~DPi 287 (341)
T CHL00149 256 ALTYRFRGHSLADPDELRSKQEKEAWVARDPI 287 (341)
T ss_pred EEEecCCCcCCCCCccCCCHHHHHHHhcCCHH
Confidence 99999999999999999999999999965543
No 4
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.6e-62 Score=476.33 Aligned_cols=262 Identities=56% Similarity=0.962 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHH
Q 018048 86 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSE 165 (361)
Q Consensus 86 ~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~e 165 (361)
+|+++++|+.|+++|.||+++.+++++|+++||+|++.||||+++|++.+|+++||++++||+|++.|++|+++.++|.+
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHH
Q 018048 166 LFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL 245 (361)
Q Consensus 166 l~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL 245 (361)
++++.+|.+.|++|++|+.+++.++.+.+++||+++|+|+|+++|.|++ +++++|||++|||++++|.|+|+|
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~-------~~~~~vv~~~GDGa~~~g~~~eal 153 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYR-------GNDNVTACFFGDGAANQGQFYESF 153 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHh-------CCCCEEEEEeCCCcccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 578999999999999999999999
Q ss_pred HHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 246 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 246 ~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
++|+.+++|+||||+||+|+++++.+.+...++++++|++||+++++|||+|++++++++++|+++++++++|+|||+.|
T Consensus 154 n~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t 233 (315)
T TIGR03182 154 NMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKT 233 (315)
T ss_pred HHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeC
Confidence 99999999999999999999998877777788999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCHHHHHhHHHhhhc
Q 018048 326 YRFRGHSLADPDELRDPGEHLVLVLFIFC 354 (361)
Q Consensus 326 ~R~~gHs~~Dp~~yR~~~e~~~~~~~~~~ 354 (361)
||..||+++|++.||+++|++.|..-++.
T Consensus 234 ~R~~gHs~~D~~~Yr~~~e~~~~~~~dPi 262 (315)
T TIGR03182 234 YRFRGHSMSDPAKYRSKEEVEEWRKRDPI 262 (315)
T ss_pred CcCCCCCCCCccccCCHHHHHHHHhcCHH
Confidence 99999999999999999999999865544
No 5
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.5e-61 Score=456.24 Aligned_cols=262 Identities=45% Similarity=0.820 Sum_probs=252.0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCC
Q 018048 78 SISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGV 157 (361)
Q Consensus 78 ~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~ 157 (361)
|+..+.+++++++++|++|+++|+||..+..+|++++|+||+|++.||||+++|+.+++++.|.|+++||+|++.+.+|+
T Consensus 50 p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~ 129 (394)
T KOG0225|consen 50 PSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGV 129 (394)
T ss_pred CCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCc
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc
Q 018048 158 PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN 237 (361)
Q Consensus 158 ~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~ 237 (361)
++.++|.||+|+..|++.|.+|+||++.+. |.++.|++|.++|.+.|+|+|+||++ .+.+++++.|||+.+
T Consensus 130 S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k~--FyGGnGIVGAQiPLGaGia~A~kY~~-------~~~v~~alYGDGAaN 200 (394)
T KOG0225|consen 130 SVREVLAELMGRQAGCSKGKGGSMHMYAKN--FYGGNGIVGAQIPLGAGIAFAQKYNR-------EDAVCFALYGDGAAN 200 (394)
T ss_pred cHHHHHHHHhccccccccCCCcceeeeccc--ccCccceeccCCCccccHHHHHHhcc-------CCceEEEEecccccc
Confidence 999999999999999999999999999875 89999999999999999999999994 578999999999999
Q ss_pred CcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCC
Q 018048 238 NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEG 317 (361)
Q Consensus 238 ~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~g 317 (361)
||+++|++|+|+.|+||+||||+||.|+++++..+....++|.++. .| +|+++|||.|+++|+++.+.|.+++++++|
T Consensus 201 QGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~G 278 (394)
T KOG0225|consen 201 QGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKG 278 (394)
T ss_pred chhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999998888999999999 45 999999999999999999999999999999
Q ss_pred CEEEEEEEecCCCCCCCCC-CCCCCHHHHHhHHH
Q 018048 318 PTLVECETYRFRGHSLADP-DELRDPGEHLVLVL 350 (361)
Q Consensus 318 P~lIev~t~R~~gHs~~Dp-~~yR~~~e~~~~~~ 350 (361)
|.|+|+.|||.+|||.+|| +.||+.||++.-..
T Consensus 279 PilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~ 312 (394)
T KOG0225|consen 279 PILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQ 312 (394)
T ss_pred CEEEEEeeeeecccccCCCCcccchHHHHHHHHh
Confidence 9999999999999999999 78999999987653
No 6
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=1.1e-60 Score=471.30 Aligned_cols=259 Identities=42% Similarity=0.796 Sum_probs=248.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHH
Q 018048 82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA 161 (361)
Q Consensus 82 ~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~ 161 (361)
..+++++++++|+.|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||++++||+|++.|++|+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcch
Q 018048 162 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF 241 (361)
Q Consensus 162 ~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~ 241 (361)
+|.|++++.+|++.|++|++|+++++.++.+.++++|.++|.|+|+|+|.|++ +.+.+++|++|||++++|.|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~-------~~~~v~v~~~GDGa~~eG~~ 177 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYN-------KEENVAFALYGDGAANQGQL 177 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHh-------CCCCeEEEEECCCCcccCHH
Confidence 99999999999999999999999999999999999999999999999999998 46889999999999999999
Q ss_pred HHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEE
Q 018048 242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV 321 (361)
Q Consensus 242 ~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lI 321 (361)
||+||+|+.|+||+||||+||+|+++++...+...+++.+++ +++|+++|||+|+++|+++++.|++++|+ +||+||
T Consensus 178 ~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lI 254 (362)
T PLN02269 178 FEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVL 254 (362)
T ss_pred HHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEE
Confidence 999999999999999999999999999888887778887654 68999999999999999999999999999 999999
Q ss_pred EEEEecCCCCCCCCCC-CCCCHHHHHhHHH
Q 018048 322 ECETYRFRGHSLADPD-ELRDPGEHLVLVL 350 (361)
Q Consensus 322 ev~t~R~~gHs~~Dp~-~yR~~~e~~~~~~ 350 (361)
|+.|||++||+++||+ .||+++|++.|..
T Consensus 255 e~~tyR~~gHs~~D~~~~YR~~~E~~~~~~ 284 (362)
T PLN02269 255 EMDTYRYHGHSMSDPGSTYRTRDEISGVRQ 284 (362)
T ss_pred EEecCcCCCcCCCCCCcccCCHHHHHHHHh
Confidence 9999999999999985 8999999999974
No 7
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.8e-58 Score=445.35 Aligned_cols=256 Identities=49% Similarity=0.807 Sum_probs=243.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcC
Q 018048 92 LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 171 (361)
Q Consensus 92 ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~ 171 (361)
+|+.|+++|.||+++.+++++||+.||+|++.||||+++|++.+|+++|+++++||+|++.|++|+++.++|.+++++.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhC
Q 018048 172 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 251 (361)
Q Consensus 172 g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~ 251 (361)
|++.|++|++|+.++..++.+.+|+||+++|+|+|+++|.|+. +++++|||++|||++++|.|+|+|++|+++
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~-------~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~ 153 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYR-------GEDRVAVCFFGDGATNEGDFHEALNFAALW 153 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHh-------CCCCEEEEEeCCCccccchHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998887 578999999999999999999999999999
Q ss_pred CCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCC
Q 018048 252 KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 331 (361)
Q Consensus 252 ~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gH 331 (361)
++|+||||+||+|+++++...+...+++.+++++||+++++||++|++++++++++|+++++++++|+||||.|+|..||
T Consensus 154 ~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gH 233 (293)
T cd02000 154 KLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGH 233 (293)
T ss_pred CCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCC
Confidence 99999999999999988877777789999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCCHHHHHhHHHhhhc
Q 018048 332 SLA-DPDELRDPGEHLVLVLFIFC 354 (361)
Q Consensus 332 s~~-Dp~~yR~~~e~~~~~~~~~~ 354 (361)
+++ ||..||+++|++.|...++.
T Consensus 234 s~~dd~~~Yr~~~e~~~~~~~dpi 257 (293)
T cd02000 234 STSDDPSRYRTKEEVEEWKKRDPI 257 (293)
T ss_pred CCCCCcccCCCHHHHHHHhcCCHH
Confidence 965 58899999999998865443
No 8
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.4e-57 Score=445.83 Aligned_cols=255 Identities=38% Similarity=0.603 Sum_probs=238.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHH
Q 018048 82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA 161 (361)
Q Consensus 82 ~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~ 161 (361)
+.+++++++++|+.|+++|.||+++.+++++|++ ||+|++.||||+++|++.+|+++|+++++||+|++.|++|+++.+
T Consensus 19 ~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~~ 97 (341)
T TIGR03181 19 PDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVE 97 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHHH
Confidence 4689999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcch
Q 018048 162 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF 241 (361)
Q Consensus 162 ~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~ 241 (361)
+|++++++.+|. + ..+..++.+.+++||+++|.|+|+|+|.|+. +++++|||++|||++++|.|
T Consensus 98 ~~ae~~g~~~g~--------~-~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~-------~~~~~vv~~~GDGa~~~g~~ 161 (341)
T TIGR03181 98 ILLYWRGDERGS--------W-DPEGVNILPPNIPIGTQYLHAAGVAYALKLR-------GEDNVAVTYFGDGGTSEGDF 161 (341)
T ss_pred HHHHhcCcCcCC--------C-CchhcCccCCCchHhcchhHHHhHHHHHHhh-------CCCCEEEEEecCCccccChH
Confidence 999999987653 1 1356788899999999999999999998887 58999999999999999999
Q ss_pred HHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEE
Q 018048 242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV 321 (361)
Q Consensus 242 ~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lI 321 (361)
+|+|+||++|+|||||||+||+|+++++...+...+++.++|++||+++++||++|+++|++++++|+++++++++|+||
T Consensus 162 ~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lI 241 (341)
T TIGR03181 162 YEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLI 241 (341)
T ss_pred HHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 99999999999999999999999998876666677899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCC-CCCCCCHHHHHhHHHhhh
Q 018048 322 ECETYRFRGHSLAD-PDELRDPGEHLVLVLFIF 353 (361)
Q Consensus 322 ev~t~R~~gHs~~D-p~~yR~~~e~~~~~~~~~ 353 (361)
|+.|||..||+++| +..||+++|++.|..-++
T Consensus 242 ev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~Dp 274 (341)
T TIGR03181 242 EAVTYRLGPHTTADDPTRYRTKEEEEEWRKKDP 274 (341)
T ss_pred EEEeecCCCCCCCCCCccCCCHHHHHHHhcCCH
Confidence 99999999999998 568999999999986444
No 9
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=7.8e-56 Score=428.16 Aligned_cols=252 Identities=44% Similarity=0.707 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCC
Q 018048 93 YEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATG 172 (361)
Q Consensus 93 y~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g 172 (361)
|+.|+ +|+||++...++.++++.||+|++.||||++++++.+|+++||++++||+|++.|++|+++.++|.+++++..+
T Consensus 1 y~~m~-~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g 79 (300)
T PF00676_consen 1 YRMML-IRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKG 79 (300)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTS
T ss_pred CchHH-HHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccC
Confidence 44454 56666666555666667899999999999999999999999999999999999999999999999999999854
Q ss_pred CcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCC
Q 018048 173 CCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK 252 (361)
Q Consensus 173 ~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~ 252 (361)
...+.. +.|...+..++.+..+++|.++|.|+|+|+|.|++ +.+.+++|++|||++++|.|+|+||+|+.|+
T Consensus 80 ~~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~-------~~~~v~v~~~GDga~~qG~~~EalN~A~~~~ 151 (300)
T PF00676_consen 80 HGGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYR-------GKDGVVVCFFGDGATSQGDFHEALNLAALWK 151 (300)
T ss_dssp TTTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHT-------TSSEEEEEEEETGGGGSHHHHHHHHHHHHTT
T ss_pred CCCCcc-ccccccccceeeeccccccccCccccchhHhhhhc-------CCceeEEEEecCcccccCccHHHHHHHhhcc
Confidence 432222 24455566678899999999999999999999987 5789999999999999999999999999999
Q ss_pred CCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048 253 LPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (361)
Q Consensus 253 LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (361)
|||||||+||+|+|+++...|+...+++++|++||+|+++|||+|+++|++++++|++++|+++||+|||++|||++||+
T Consensus 152 lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs 231 (300)
T PF00676_consen 152 LPVIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHS 231 (300)
T ss_dssp TSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SS
T ss_pred CCeEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCHHHHHhHHHhhh
Q 018048 333 LAD-PDELRDPGEHLVLVLFIF 353 (361)
Q Consensus 333 ~~D-p~~yR~~~e~~~~~~~~~ 353 (361)
++| |..||+++|++.|....+
T Consensus 232 ~~Dd~~~yr~~~e~~~~~~~~D 253 (300)
T PF00676_consen 232 ESDDPTFYRSPEEYEEWWKKRD 253 (300)
T ss_dssp TTSCGGGTSHHHHHHHHHHCT-
T ss_pred CCCCccccCCHHHHHHHHhcCc
Confidence 998 788998999888776633
No 10
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.6e-52 Score=391.00 Aligned_cols=308 Identities=25% Similarity=0.375 Sum_probs=289.9
Q ss_pred CCCcccCccceeecccccCCCCCCcccccchhHHHHHHhhhccc-ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018048 35 TGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVKS-ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRG 113 (361)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~g 113 (361)
....|+|....|. ++++.+|++. ...++|.+++|+++...+ +..+.++.+-.++||+.|++...+|..+-+-++||
T Consensus 36 ~~~~fpg~ka~ft-~kl~fI~~~d--~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQG 112 (432)
T KOG1182|consen 36 DYKDFPGAKAAFT-SKLEFIQPSD--TPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQG 112 (432)
T ss_pred hhccCCCCccccc-cceeecCccc--CCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3678999988888 9999998854 556899999999998874 68899999999999999999999999999999999
Q ss_pred eeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCC
Q 018048 114 KMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGG 193 (361)
Q Consensus 114 k~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~ 193 (361)
+| .||.++.|+||+-+|.+++|.+.|+|+++||+.|.+|.+|.++++++.+++|+..+..+|+++.+|+.+++.+|...
T Consensus 113 Ri-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~ti 191 (432)
T KOG1182|consen 113 RI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTI 191 (432)
T ss_pred eE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEe
Confidence 99 79999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc
Q 018048 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA 273 (361)
Q Consensus 194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q 273 (361)
++++..++|.|+|+|+|.|+++ ..++.+||++|||+.++|++|.+||+|+....||||+|-||+|+|++++.+|
T Consensus 192 ssplatqlpqAvGaaYa~k~~~------~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQ 265 (432)
T KOG1182|consen 192 SSPLATQLPQAVGAAYALKMRK------KNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQ 265 (432)
T ss_pred cchhhhccchhhhhhhhhhhcc------cCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHH
Confidence 9999999999999999998774 3568999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCC-CCCCCHHHHHhHHHhh
Q 018048 274 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP-DELRDPGEHLVLVLFI 352 (361)
Q Consensus 274 ~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp-~~yR~~~e~~~~~~~~ 352 (361)
.....++-++.+||+..++|||+|+++||.++++|-+.+....+|+|||+.|||...||++|+ ++||+.+|++.|-...
T Consensus 266 yr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~ 345 (432)
T KOG1182|consen 266 YRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSR 345 (432)
T ss_pred hcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhccc
Confidence 988889999999999999999999999999999999999999999999999999999999985 6899999999997654
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.2e-47 Score=412.45 Aligned_cols=273 Identities=20% Similarity=0.245 Sum_probs=238.3
Q ss_pred hHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHH------hcCCC
Q 018048 66 AVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIK------LLKKE 139 (361)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~------~l~~~ 139 (361)
-.++|.++++|.... .+++++++++|+.|+++|.||+++.+.|.++|+++ +.|||++.++++. +++..
T Consensus 170 ~er~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~----~eG~Ea~i~gl~~li~~a~~lg~~ 243 (924)
T PRK09404 170 EERRWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFS----LEGGESLIPMLDEIIRRAGKLGVK 243 (924)
T ss_pred HHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc----ccchhhHHHHHHHHHHHHHhCCCC
Confidence 467899999996444 88999999999999999999999999999999974 8999999999988 55588
Q ss_pred cEEEc-ccCCcchhhcC--CCCHHHHHHHHhcCc--CC-----Ccc----------cCCCccccccccccccCCcccccc
Q 018048 140 DSVVS-TYRDHVHALSK--GVPARAVMSELFGKA--TG-----CCR----------GQGGSMHMFSKEHNLLGGFAFIGE 199 (361)
Q Consensus 140 D~v~~-~yR~~~~~l~~--g~~~~~~~~el~~~~--~g-----~~~----------gd~G~~h~~~~~~~~~~~~g~mG~ 199 (361)
|+|++ +||+|++.|+. |+++.++|+|++++. ++ .++ +++|++|+... ...+++|.
T Consensus 244 D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~-----~npShlea 318 (924)
T PRK09404 244 EIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLA-----FNPSHLEI 318 (924)
T ss_pred CEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeecc-----CCcccccc
Confidence 99999 69999999994 999999999999986 22 222 33444444332 24589999
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccC
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATS 275 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~ 275 (361)
..|+|+|+|+|.|+++... ....+.++|+++|||++ ++|.|+|+||+|+.|++| +||||+||+|+++++...+++
T Consensus 319 v~Pva~G~A~A~q~~~~~~-~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s 397 (924)
T PRK09404 319 VNPVVEGSVRARQDRRGDG-QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRS 397 (924)
T ss_pred ccCeehhHHHHHHHhcCCc-ccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhcc
Confidence 9999999999999884210 01122789999999998 699999999999999998 999999999999999888888
Q ss_pred CcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHHH
Q 018048 276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVL 350 (361)
Q Consensus 276 ~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~ 350 (361)
..++.++|++||+|+++|||+|+++|+++++.|++++|+++||+|||++|||.+||+++|+..||+++|.+.|..
T Consensus 398 ~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~ 472 (924)
T PRK09404 398 TPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKK 472 (924)
T ss_pred chhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHh
Confidence 888999999999999999999999999999999999999999999999999999999999888999999998864
No 12
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=1.6e-45 Score=347.95 Aligned_cols=235 Identities=23% Similarity=0.316 Sum_probs=209.5
Q ss_pred HHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCC------CcEEEcc-cCCcchhhc--CCCCHHHHHHHHhcCcC-
Q 018048 102 FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSVVST-YRDHVHALS--KGVPARAVMSELFGKAT- 171 (361)
Q Consensus 102 ~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~------~D~v~~~-yR~~~~~l~--~g~~~~~~~~el~~~~~- 171 (361)
||+++.+.|...|+++ ++|+|++.+++..++++ +|+++++ ||++.+.|+ .|++++++|.|++++.+
T Consensus 1 ~e~f~~~~f~~~krfs----~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKRFG----LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeEEE----ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 6889999999988764 89999999999999986 7999998 999999999 99999999999999876
Q ss_pred --CCcccCCCcccccccc-----------ccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcc-c
Q 018048 172 --GCCRGQGGSMHMFSKE-----------HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-N 237 (361)
Q Consensus 172 --g~~~gd~G~~h~~~~~-----------~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~-~ 237 (361)
+...++....|+.... .++.++.+++|.++|.|+|+|+|.|+++.. ....+.++||++|||++ +
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~--~~~~~~v~v~~~GDgA~~~ 154 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGD--GERDKVLPILIHGDAAFAG 154 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCC--ccCCCeEEEEEecCccccC
Confidence 4344555567876543 345688999999999999999999998421 01146899999999997 5
Q ss_pred CcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHc
Q 018048 238 NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 314 (361)
Q Consensus 238 ~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~ 314 (361)
+|.|+|+||+|..+++| +||||+||+|+++++...+++.+++.++|++||+|+++|||+|+++|++++++|++++|+
T Consensus 155 qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~ 234 (265)
T cd02016 155 QGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQK 234 (265)
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 999999999999999888888889999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCCCCCCCCCCCCCCH
Q 018048 315 GEGPTLVECETYRFRGHSLADPDELRDP 342 (361)
Q Consensus 315 ~~gP~lIev~t~R~~gHs~~Dp~~yR~~ 342 (361)
++||+|||++|||++||+++|+..|+.|
T Consensus 235 g~gp~lIe~~tYR~~GHse~D~p~~t~p 262 (265)
T cd02016 235 FKKDVVIDLVCYRRHGHNELDEPSFTQP 262 (265)
T ss_pred cCCCEEEEEEEecCCCCCCcCCccccCC
Confidence 9999999999999999999998888765
No 13
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=7.5e-42 Score=366.38 Aligned_cols=278 Identities=19% Similarity=0.233 Sum_probs=239.0
Q ss_pred hhHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC------C
Q 018048 65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------K 138 (361)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~------~ 138 (361)
.-.+.|.++++|.+. ...+++++.+.+++.|+.+..||+++.+.|...|+|| .+|.|++..++...++ -
T Consensus 168 ~~~r~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFs----lEG~eslip~l~~~i~~~~~~gv 242 (929)
T TIGR00239 168 TEEKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFS----LEGLDALVPMLKEIIRHSVNSGT 242 (929)
T ss_pred HHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceee----cccHHHHHHHHHHHHHHHHHcCC
Confidence 345789999999766 7899999999999999999999999999999999986 8999999877655554 5
Q ss_pred CcEEEcc-cCCcchhhc--CCCCHHHHHHHHhcCcCCC-cccCCCc-ccccc-----------ccccccCCccccccccH
Q 018048 139 EDSVVST-YRDHVHALS--KGVPARAVMSELFGKATGC-CRGQGGS-MHMFS-----------KEHNLLGGFAFIGEGIP 202 (361)
Q Consensus 139 ~D~v~~~-yR~~~~~l~--~g~~~~~~~~el~~~~~g~-~~gd~G~-~h~~~-----------~~~~~~~~~g~mG~~lP 202 (361)
.|+|+++ ||++.+.|+ .|.+++++|.|+.++..+. +.|.+.. .|+.. ...++.++.++++...|
T Consensus 243 ~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~P 322 (929)
T TIGR00239 243 RDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSP 322 (929)
T ss_pred CeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccc
Confidence 7999997 999999999 8999999999999987653 2233333 56662 12345688999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCCe---EEEEEcCCcccccccccccCCcc
Q 018048 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPI---VFVVENNLWAIGMSHLRATSDPQ 278 (361)
Q Consensus 203 ~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LPv---i~VV~NN~y~is~~~~~q~~~~d 278 (361)
+|+|.++|.|+++... ....+.++||++|||++ ++|.|+|+||+|+.|++|+ ||||+||+|+++++...+++.+.
T Consensus 323 va~G~ArA~q~~~~~~-~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~ 401 (929)
T TIGR00239 323 VVIGSTRARLDRLNDS-PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPY 401 (929)
T ss_pred hhhhHHHHHHHhcCCc-ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccC
Confidence 9999999999884210 11236799999999997 7999999999999999997 99999999999998777777788
Q ss_pred hhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCC-CCCHHHHHhHH
Q 018048 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE-LRDPGEHLVLV 349 (361)
Q Consensus 279 ~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~-yR~~~e~~~~~ 349 (361)
+.++|++||+|+++|||+|+++|+++++.|++++|+++||+|||++|||.+||+++|+.. ||+ ++.+.|.
T Consensus 402 ~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~ 472 (929)
T TIGR00239 402 CSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIK 472 (929)
T ss_pred HHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999655 887 5555554
No 14
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.97 E-value=1.4e-29 Score=264.76 Aligned_cols=204 Identities=23% Similarity=0.233 Sum_probs=171.1
Q ss_pred HHHhcCeeceeeecCCCchhHHHHHHHhcC---CCcEEE--cccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccc
Q 018048 108 QMYYRGKMFGFVHLYNGQEAVSTGFIKLLK---KEDSVV--STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMH 182 (361)
Q Consensus 108 ~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~---~~D~v~--~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h 182 (361)
-++..++..|+++++.|+ +.++++.++. +.|+++ +.||+|++.|.+|.++..++.++.++..|.+.+.++ .|
T Consensus 31 ~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~s-~~ 107 (581)
T PRK12315 31 LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEES-EH 107 (581)
T ss_pred HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHHcCCccchhhHHHcCCCCCCCCCCCC-CC
Confidence 344567788999999999 4555565666 899998 899999999999999999999999999988776553 33
Q ss_pred cccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcC
Q 018048 183 MFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262 (361)
Q Consensus 183 ~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN 262 (361)
.+ ...|+.|.++|+|+|+|+|.+++ +.+.+|||++|||++++|.+||+||+|+.|++|+|+||+||
T Consensus 108 ~~-------~~~g~~~~~ls~A~G~A~A~k~~-------~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN 173 (581)
T PRK12315 108 DF-------FTVGHTSTSIALATGLAKARDLK-------GEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDN 173 (581)
T ss_pred CC-------cCCCcHHHHHHHHHHHHHHHHhc-------CCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECC
Confidence 21 25588899999999999998887 46789999999999999999999999999999999999999
Q ss_pred Ccccccccc---------cccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048 263 LWAIGMSHL---------RATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (361)
Q Consensus 263 ~y~is~~~~---------~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (361)
+|+++.+.. .+....++.+++++||++++.| ||+|+.++++++++ +++.++|++|+++|+|..|..
T Consensus 174 ~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~----a~~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 174 QMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKE----VKDIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred CCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHH----HHhCCCCEEEEEEeecCCCCC
Confidence 999986653 1223445678899999999998 99999988776655 566789999999999999975
No 15
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.96 E-value=2.3e-27 Score=250.26 Aligned_cols=275 Identities=20% Similarity=0.236 Sum_probs=222.3
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC------CCc
Q 018048 67 VSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KED 140 (361)
Q Consensus 67 ~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~------~~D 140 (361)
-+-|.+++++. -+...+.++-+.+++++.-+..||.++.+.|-..|+| +.+|.|.+..-+-..|. -+.
T Consensus 475 qr~W~Q~rvE~--~~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRF----slEG~Es~iplld~~~~~aa~~~l~e 548 (1228)
T PRK12270 475 QRRWLQERVER--PHEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRF----SLEGGESLIPLLDAVLDQAAEHGLDE 548 (1228)
T ss_pred HHHHHHHHhhC--CCCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceee----eecchhhHHHHHHHHHHHHHhcCCce
Confidence 35688888887 4566689999999999999999999999999999987 48899988665555554 245
Q ss_pred EEEc-ccCCcchhhc--CCCCHHHHHHHHhcCcCCC---cccCCCcccccccc-------c----cccCCccccccccHH
Q 018048 141 SVVS-TYRDHVHALS--KGVPARAVMSELFGKATGC---CRGQGGSMHMFSKE-------H----NLLGGFAFIGEGIPV 203 (361)
Q Consensus 141 ~v~~-~yR~~~~~l~--~g~~~~~~~~el~~~~~g~---~~gd~G~~h~~~~~-------~----~~~~~~g~mG~~lP~ 203 (361)
+|++ .||++.+.|+ .|.+..++|.|+.|+.+.. .+||.- .|+.... . .+..+.++|..--|+
T Consensus 549 vvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVK-YHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpV 627 (1228)
T PRK12270 549 VVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVK-YHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPV 627 (1228)
T ss_pred EEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCccee-eeccCceeeeccCCCeeEEEEecCchhhhhcchH
Confidence 7777 6999999998 4889999999999987632 223332 2443211 1 124677899999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccCCcch
Q 018048 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 204 AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
.-|...|.|..-..+. .+-....|+++||++|. +|.+.|.||++..+++| +|+||+||+|++++.....++....
T Consensus 628 leGivRakQd~l~~g~-~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~ 706 (1228)
T PRK12270 628 LEGIVRAKQDRLDKGE-EGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYA 706 (1228)
T ss_pred hhhhhhhhhhhhcccc-cCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhh
Confidence 9999999776643111 12345679999999987 99999999999999999 9999999999999987777777788
Q ss_pred hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC------CCCCCCHHHHHhHH
Q 018048 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD------PDELRDPGEHLVLV 349 (361)
Q Consensus 280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D------p~~yR~~~e~~~~~ 349 (361)
.++|+++++|+++|||+|+++++.+.+.|+++.+++++|++||++|||.+||++.| |..||.-+++....
T Consensus 707 td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svr 782 (1228)
T PRK12270 707 TDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVR 782 (1228)
T ss_pred HHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHH
Confidence 88999999999999999999999999999999999999999999999999997765 33577666554443
No 16
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.93 E-value=1e-25 Score=206.20 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
+++|..+++++....++ ++..|.|.+.+|. .+.++ .+++|+||+++|+|+|+++| .|+
T Consensus 7 ~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la-----------~p~ 75 (202)
T cd02006 7 PIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAA-----------DPD 75 (202)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhh-----------CCC
Confidence 47899999999888774 4667778765542 23333 45689999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc----------------------CCcchhhc
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT----------------------SDPQIYKK 282 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~----------------------~~~d~~~~ 282 (361)
++|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.++.|. ..+||+++
T Consensus 76 ~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~-~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 152 (202)
T cd02006 76 RQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNA-YLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKV 152 (202)
T ss_pred CeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCc-hHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHH
Confidence 999999999999999 8999999999999999999998 4444332110 14899999
Q ss_pred cccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 283 A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
|++||+++.+|+..+ ++.+++++|++.+++.++|+||||.+.+..
T Consensus 153 A~a~G~~~~~v~~~~--el~~al~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 153 AEGLGCKAIRVTKPE--ELAAAFEQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred HHHCCCEEEEECCHH--HHHHHHHHHHHhcccCCCcEEEEEEecccc
Confidence 999999999998765 655555555443334689999999996654
No 17
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.93 E-value=1.4e-25 Score=204.44 Aligned_cols=157 Identities=22% Similarity=0.215 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
+++|.+++.++....++ ++..|.|.+..|. .+.++ .+++++||+++|+|+|+++| .|+
T Consensus 3 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~ 71 (196)
T cd02013 3 PMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAA-----------APD 71 (196)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHh-----------CCC
Confidence 46788999998887764 4667777755442 23344 35789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc------------ccCCcchhhccccCCccEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFH 292 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~------------q~~~~d~~~~A~a~Gi~~~~ 292 (361)
++|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+.. ....+||.++|++||+++++
T Consensus 72 r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~-~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 148 (196)
T cd02013 72 RPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNR-QWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGIT 148 (196)
T ss_pred CcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECc-hhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEE
Confidence 999999999999998 9999999999999999999887 44443321 12358999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
|+..+ ++..++++|++.++ .++|+||||.+++..
T Consensus 149 v~~~~--el~~al~~a~~~~~-~~~p~liev~v~~~~ 182 (196)
T cd02013 149 VDKPE--DVGPALQKAIAMMA-EGKTTVIEIVCDQEL 182 (196)
T ss_pred ECCHH--HHHHHHHHHHhcCC-CCCeEEEEEEeCccc
Confidence 98754 66555555544322 589999999997654
No 18
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.91 E-value=1.4e-24 Score=193.39 Aligned_cols=147 Identities=28% Similarity=0.325 Sum_probs=112.1
Q ss_pred HHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEE
Q 018048 160 RAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 228 (361)
Q Consensus 160 ~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv 228 (361)
.++++++....++ ++..|.|....|. .+.++ .++.|+||+++|+|+|+++| .++++|+
T Consensus 2 ~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la-----------~~~~~vv 70 (172)
T cd02004 2 YRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALA-----------RPDKRVV 70 (172)
T ss_pred HHHHHHHHHHCCCCcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHh-----------CCCCeEE
Confidence 4566667666653 3556666544332 23333 45789999999999999999 7899999
Q ss_pred EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc-----------ccCCcchhhccccCCccEEEEeCC
Q 018048 229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHVDGM 296 (361)
Q Consensus 229 ~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~-----------q~~~~d~~~~A~a~Gi~~~~Vdg~ 296 (361)
|++|||+|+|+ .++|+||+++++|+++||.||+ |++....+. ....+|+.++|++||+++.+|++.
T Consensus 71 ~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~ 148 (172)
T cd02004 71 LVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTTP 148 (172)
T ss_pred EEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEECCH
Confidence 99999999998 8999999999999999998886 554322111 124679999999999999999863
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 297 DVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 297 D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
.+ +++|++.+++.++|+||||.+
T Consensus 149 --~e----l~~al~~a~~~~~p~liev~i 171 (172)
T cd02004 149 --EE----LKPALKRALASGKPALINVII 171 (172)
T ss_pred --HH----HHHHHHHHHHcCCCEEEEEEc
Confidence 34 556666666778999999986
No 19
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.91 E-value=1.1e-24 Score=196.70 Aligned_cols=150 Identities=27% Similarity=0.459 Sum_probs=118.6
Q ss_pred CHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048 158 PARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (361)
Q Consensus 158 ~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~ 226 (361)
+|.+++++|....++ ++..|.|+...|. .+.++ .+++++||+++|+|+|+++| .++++
T Consensus 2 ~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~~~~~ 70 (186)
T cd02015 2 KPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVA-----------RPDKT 70 (186)
T ss_pred CHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHh-----------CCCCe
Confidence 567788888877764 4556767654432 23344 35679999999999999999 68899
Q ss_pred EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc-------------cccCCcchhhccccCCccEEEE
Q 018048 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------------RATSDPQIYKKGPAFGMPGFHV 293 (361)
Q Consensus 227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~-------------~q~~~~d~~~~A~a~Gi~~~~V 293 (361)
||+++|||+|+|+ .+||.||+++++|+++||.||+ +++..+. .....+||.++|++||+++++|
T Consensus 71 vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 147 (186)
T cd02015 71 VICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNG-SLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRV 147 (186)
T ss_pred EEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECC-ccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEe
Confidence 9999999999998 8999999999999999999998 3333221 0113579999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
++.+ ++++|++++++.++|+||||.+++
T Consensus 148 ~~~~------el~~al~~a~~~~~p~liev~~~~ 175 (186)
T cd02015 148 EKPE------ELEAALKEALASDGPVLLDVLVDP 175 (186)
T ss_pred CCHH------HHHHHHHHHHhCCCCEEEEEEeCC
Confidence 9854 567777777778999999999975
No 20
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.3e-23 Score=214.13 Aligned_cols=261 Identities=20% Similarity=0.252 Sum_probs=219.2
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC------CCc
Q 018048 67 VSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KED 140 (361)
Q Consensus 67 ~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~------~~D 140 (361)
-.+|.+++++.|. ...+++|+.+-+|.++.++-.||+++.+.|..-|+|| .+|.|.+..|+...++ .++
T Consensus 230 qcnWir~k~EtP~-~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFG----LEGcE~lIP~mK~iiDrS~elGVe~ 304 (1017)
T KOG0450|consen 230 QCNWIRQKFETPG-PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFG----LEGCEVLIPAMKTIIDRSSELGVES 304 (1017)
T ss_pred HhHHHHHhccCCC-ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccc----ccchhhhhhHHHHHhhhhhhcCchh
Confidence 3588999999954 7788999999999999999999999999999999998 8899999888887776 367
Q ss_pred EEEc-ccCCcchhhcCC--CCHHHHHHHHhcCcC-CCcccCCCcccccc---ccc---------cccCCccccccccHHH
Q 018048 141 SVVS-TYRDHVHALSKG--VPARAVMSELFGKAT-GCCRGQGGSMHMFS---KEH---------NLLGGFAFIGEGIPVA 204 (361)
Q Consensus 141 ~v~~-~yR~~~~~l~~g--~~~~~~~~el~~~~~-g~~~gd~G~~h~~~---~~~---------~~~~~~g~mG~~lP~A 204 (361)
+|++ .||++.+.|+.- .++++++.++.+..+ +..+||.- .|+.. ++. ....+.+++...-|+.
T Consensus 305 iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~DeGSGDVK-YHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV 383 (1017)
T KOG0450|consen 305 IVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAADEGSGDVK-YHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVV 383 (1017)
T ss_pred eEecCCccchhHHHHHHHhhHHHHHHHhccCCCCCcCCCCcee-eeeccccccccccCCceeEEEEecCchhhcccCcee
Confidence 8888 599999998753 478899999888443 23445543 24432 121 1246789999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccCCcchh
Q 018048 205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIY 280 (361)
Q Consensus 205 iGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~~~d~~ 280 (361)
+|-..|.++..... .+.+...|.++||++|. +|.++|.+.+...-+.- .|+||.||+.++++.....++.|...
T Consensus 384 ~GKtrA~q~y~~D~--~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcT 461 (1017)
T KOG0450|consen 384 MGKTRAEQFYTGDE--EGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCT 461 (1017)
T ss_pred echHHHHHHhcccc--ccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCch
Confidence 99999999886433 24556779999999999 99999998876543332 89999999999988877778888999
Q ss_pred hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC
Q 018048 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 335 (361)
Q Consensus 281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D 335 (361)
++|++.++|.++|+++|+++|..+++-|.++...+++.++|+++|||..||++.|
T Consensus 462 Dvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~D 516 (1017)
T KOG0450|consen 462 DVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEID 516 (1017)
T ss_pred hHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCccc
Confidence 9999999999999999999999999999999999999999999999999999998
No 21
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.90 E-value=6.4e-24 Score=190.68 Aligned_cols=148 Identities=22% Similarity=0.363 Sum_probs=112.4
Q ss_pred HHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEE
Q 018048 160 RAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 228 (361)
Q Consensus 160 ~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv 228 (361)
.+++.++...+++ +...|.|+...|. ++.++ .+++++||+++|+|+|+++| .++++||
T Consensus 2 ~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~~~~~vv 70 (177)
T cd02010 2 QRIVHDLRAVMGDDDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLV-----------YPDRKVV 70 (177)
T ss_pred HHHHHHHHHHCCCCcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHh-----------CCCCcEE
Confidence 3455666555543 3555666543332 12333 46789999999999999999 7899999
Q ss_pred EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEEEeCCC
Q 018048 229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFHVDGMD 297 (361)
Q Consensus 229 ~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~Vdg~D 297 (361)
+++|||+|+|+ .++|.|++++++|+++||.||+ +++..+..| ...+||.++|++||+++++|+..+
T Consensus 71 ~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~-~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~ 147 (177)
T cd02010 71 AVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDN-GYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIESAD 147 (177)
T ss_pred EEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECC-cchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHH
Confidence 99999999998 8999999999999999999887 444332111 135799999999999999998654
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 298 VLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 298 ~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
+ ++++++++++.++|+||||.+.+
T Consensus 148 --e----l~~al~~a~~~~~p~liev~~~~ 171 (177)
T cd02010 148 --D----LLPVLERALAADGVHVIDCPVDY 171 (177)
T ss_pred --H----HHHHHHHHHhCCCCEEEEEEecc
Confidence 4 45666666778899999999965
No 22
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.90 E-value=9e-24 Score=219.55 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=156.4
Q ss_pred hhHHHHHHhhhcccccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCC--CcE
Q 018048 65 VAVSEVVKEKKVKSISNLLIT-KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK--EDS 141 (361)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~--~D~ 141 (361)
.|-.|+|..++.| ..++++. ..|+...++.|+ ..++.. ...|.......++ .+.
T Consensus 293 ii~iDidp~ei~k-~~~~~~~i~gD~~~~l~~L~--~~l~~~--------------------~~~~~~~~~~~~~~~~~~ 349 (550)
T COG0028 293 IIHIDIDPAEIGK-NYPVDVPIVGDAKATLEALL--EELKPE--------------------RAAWLEELLEARAAYRDL 349 (550)
T ss_pred EEEEeCChHHhCC-CCCCCeeEeccHHHHHHHHH--Hhhhhc--------------------chHHHHHHHHHHHhhhhh
Confidence 7889999999999 4556666 557777777666 333211 0001111111110 111
Q ss_pred EEcccCCcchhhcCCCCHHHHHHHHhcCcCC--CcccCCCccccccc-------cccc--cCCccccccccHHHHHHHHH
Q 018048 142 VVSTYRDHVHALSKGVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EHNL--LGGFAFIGEGIPVATGAAFT 210 (361)
Q Consensus 142 v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~-------~~~~--~~~~g~mG~~lP~AiGaA~A 210 (361)
..... ... ...|.+++..+....++ +++.|.|++.+|.. ++++ ++++|+||+++|+|||++++
T Consensus 350 ~~~~~---~~~---~~~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla 423 (550)
T COG0028 350 ALEEL---ADD---GIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLA 423 (550)
T ss_pred hhhcc---CCC---ccCHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHHhcccCCCCcEEcCCCCccccchHHHHHHHHhh
Confidence 11110 000 11577888888887774 67889999888742 3343 57899999999999999999
Q ss_pred HHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccC-----------Ccc-
Q 018048 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS-----------DPQ- 278 (361)
Q Consensus 211 ~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~-----------~~d- 278 (361)
.|+++|||++|||+|+|+ .+||.||+++++||++||.||+ ++++.++.|.. ...
T Consensus 424 -----------~P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~-~~g~v~~~q~~~~~~~~~~~~~~~~~ 489 (550)
T COG0028 424 -----------APDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNG-GYGMVRQWQELFYGGRYSGTDLGNPD 489 (550)
T ss_pred -----------CCCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECC-ccccchHHHHHhcCCCcceeecCCcc
Confidence 789999999999999999 9999999999999999999999 66666554421 112
Q ss_pred hhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 279 ~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
|.++|++||+++++|+..+ +++++++++++.++|+||||.+++.
T Consensus 490 f~klAea~G~~g~~v~~~~------el~~al~~al~~~~p~lidv~id~~ 533 (550)
T COG0028 490 FVKLAEAYGAKGIRVETPE------ELEEALEEALASDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHHHHcCCeeEEeCCHH------HHHHHHHHHHhCCCCEEEEEEecCc
Confidence 9999999999999999554 4577888888899999999999876
No 23
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.90 E-value=1.6e-23 Score=192.21 Aligned_cols=148 Identities=18% Similarity=0.153 Sum_probs=111.2
Q ss_pred HHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEE
Q 018048 162 VMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAF 230 (361)
Q Consensus 162 ~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~ 230 (361)
++.+|....++ ++..|.|++.+|. .+.++ .+++|+||+++|+|+|+++| .|+++|||+
T Consensus 4 ~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la-----------~p~~~vv~i 72 (205)
T cd02003 4 VLGALNEAIGDDDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLA-----------KPDREVYVL 72 (205)
T ss_pred HHHHHHHhCCCCCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHh-----------CCCCeEEEE
Confidence 44555554442 4556666554432 23334 36789999999999999999 789999999
Q ss_pred ECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------------------cCCcchhhcccc
Q 018048 231 FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------------------TSDPQIYKKGPA 285 (361)
Q Consensus 231 ~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------------------~~~~d~~~~A~a 285 (361)
+|||+|+|+ .++|.||+++++|+++||.||+ ++++.+..| ...+||.++|++
T Consensus 73 ~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a 149 (205)
T cd02003 73 VGDGSYLML--HSEIVTAVQEGLKIIIVLFDNH-GFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARS 149 (205)
T ss_pred Eccchhhcc--HHHHHHHHHcCCCCEEEEEECC-ccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHh
Confidence 999999998 8999999999999999999887 333322100 124799999999
Q ss_pred CCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 286 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 286 ~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
||+++++|+.. .+ +++|++++++.++|+||||.+.+..
T Consensus 150 ~G~~~~~v~~~--~e----l~~al~~a~~~~gp~lIeV~v~~~~ 187 (205)
T cd02003 150 LGARVEKVKTI--EE----LKAALAKAKASDRTTVIVIKTDPKS 187 (205)
T ss_pred CCCEEEEECCH--HH----HHHHHHHHHhCCCCEEEEEEeeccc
Confidence 99999999754 35 4566666677889999999997643
No 24
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.90 E-value=1.8e-22 Score=213.27 Aligned_cols=262 Identities=21% Similarity=0.229 Sum_probs=218.2
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC------CCc
Q 018048 67 VSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KED 140 (361)
Q Consensus 67 ~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~------~~D 140 (361)
-+.|..+++|. ..+.++.|+.+.+|+.|..+..||+++...|...|+|| .+|.|++..++-..++ -.+
T Consensus 157 ~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFs----lEG~eslip~l~~~i~~~~~~G~~~ 230 (906)
T COG0567 157 EKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFS----LEGGESLIPMLDELIDRAGKQGVKE 230 (906)
T ss_pred HHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc----ccchhhHHHHHHHHHHHHHhcCcce
Confidence 46788888888 67888999999999999999999999999999999985 8999999877766654 368
Q ss_pred EEEc-ccCCcchhhc--CCCCHHHHHHHHhcCcC-CCcccCCCcccccc-cc----c-----cccCCccccccccHHHHH
Q 018048 141 SVVS-TYRDHVHALS--KGVPARAVMSELFGKAT-GCCRGQGGSMHMFS-KE----H-----NLLGGFAFIGEGIPVATG 206 (361)
Q Consensus 141 ~v~~-~yR~~~~~l~--~g~~~~~~~~el~~~~~-g~~~gd~G~~h~~~-~~----~-----~~~~~~g~mG~~lP~AiG 206 (361)
+|++ .||++.+.|. .|.+++.+|.|+.+... ...+||.-. |+.. .. . .+..+.++|..-.|+..|
T Consensus 231 vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKY-H~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G 309 (906)
T COG0567 231 VVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKY-HLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEG 309 (906)
T ss_pred EEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCccccccc-ccccccccccCCCeeEEEecCCcchhhhhchhhhc
Confidence 8888 6999999987 58999999999998664 223566543 3332 11 1 123667999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccCCcchhhc
Q 018048 207 AAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKK 282 (361)
Q Consensus 207 aA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~~~d~~~~ 282 (361)
.+.|.+......+ .+....|.++||.+|. +|.+.|.||+...-+.- .++||.||+.++++.....++.+...++
T Consensus 310 ~vRa~Qd~~~d~~--~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDv 387 (906)
T COG0567 310 SVRAKQDRLGDTE--RDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDV 387 (906)
T ss_pred chHhhhhhhccCc--cceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCCh
Confidence 9999877643211 1235567999999999 99999999999875543 9999999999998876666777888888
Q ss_pred cccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC-CC
Q 018048 283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD-PD 337 (361)
Q Consensus 283 A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D-p~ 337 (361)
|+.+++|.++|++.||+++..+.+.|+++...++++++|++.|||..||++.| |+
T Consensus 388 AKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs 443 (906)
T COG0567 388 AKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS 443 (906)
T ss_pred hhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999998 44
No 25
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.89 E-value=2.7e-23 Score=185.78 Aligned_cols=148 Identities=24% Similarity=0.310 Sum_probs=113.6
Q ss_pred CHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048 158 PARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (361)
Q Consensus 158 ~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~ 226 (361)
+|..++.++....++ ++..|.|....|. .+.++ .++ |+||+++|+|+|+++| .++++
T Consensus 2 ~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala-----------~~~~~ 69 (178)
T cd02002 2 TPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALA-----------NPDRK 69 (178)
T ss_pred CHHHHHHHHHhhCCCCeEEEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhc-----------CCCCe
Confidence 567788888777764 4566666654432 13333 345 9999999999999999 67899
Q ss_pred EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc-----------------ccCCcchhhccccCCc
Q 018048 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR-----------------ATSDPQIYKKGPAFGM 288 (361)
Q Consensus 227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~-----------------q~~~~d~~~~A~a~Gi 288 (361)
|||++|||+|+|+ .++|.||+++++|+++||.||+ |++....+. ....+|+.++|++||+
T Consensus 70 vv~i~GDG~f~~~--~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~ 147 (178)
T cd02002 70 VVAIIGDGSFMYT--IQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGV 147 (178)
T ss_pred EEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCC
Confidence 9999999999999 7999999999999999999997 665321110 0134799999999999
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 289 PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 289 ~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
++++|++. .+ +++|++++++.++|+|||+.+
T Consensus 148 ~~~~v~~~--~e----l~~al~~a~~~~~p~vi~v~v 178 (178)
T cd02002 148 EAERVETP--EE----LDEALREALAEGGPALIEVVV 178 (178)
T ss_pred ceEEeCCH--HH----HHHHHHHHHhCCCCEEEEEEC
Confidence 99999874 35 455666666678999999964
No 26
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.89 E-value=5e-23 Score=184.74 Aligned_cols=153 Identities=24% Similarity=0.335 Sum_probs=117.4
Q ss_pred CCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048 157 VPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (361)
Q Consensus 157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~ 225 (361)
++|..++.++....+. +...|.|....+. .+..+ .+++|+||+++|+|+|+++| .+++
T Consensus 2 ~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a-----------~~~~ 70 (178)
T cd02014 2 IHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLA-----------YPDR 70 (178)
T ss_pred CCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHh-----------CCCC
Confidence 4577788888876664 4556666543331 12333 46789999999999999999 6889
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc---------cccCCcchhhccccCCccEEEEeC
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RATSDPQIYKKGPAFGMPGFHVDG 295 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~---------~q~~~~d~~~~A~a~Gi~~~~Vdg 295 (361)
+||+++|||+|+++ .+||.+++++++|+++||.||+ |++....+ .....+|+.++|++||+++++|+.
T Consensus 71 ~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~ 148 (178)
T cd02014 71 QVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVED 148 (178)
T ss_pred cEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCC
Confidence 99999999999999 8999999999999999999997 55421100 011357999999999999999986
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 296 MDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 296 ~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
.+ + ++++++++++.++|+||||.+.+.
T Consensus 149 ~~--e----l~~~l~~a~~~~~p~liev~~~~~ 175 (178)
T cd02014 149 PD--E----LEAALDEALAADGPVVIDVVTDPN 175 (178)
T ss_pred HH--H----HHHHHHHHHhCCCCEEEEEEeCCC
Confidence 54 4 566777777788999999998653
No 27
>PRK06163 hypothetical protein; Provisional
Probab=99.88 E-value=2.9e-22 Score=183.68 Aligned_cols=169 Identities=16% Similarity=0.238 Sum_probs=124.9
Q ss_pred CCHHHHHHHHhcCcCC--CcccCCCc--cccccc---cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEE
Q 018048 157 VPARAVMSELFGKATG--CCRGQGGS--MHMFSK---EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA 229 (361)
Q Consensus 157 ~~~~~~~~el~~~~~g--~~~gd~G~--~h~~~~---~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~ 229 (361)
++-.+++.++....++ .+..|.|+ ..+|.. +.++. .+|+||+++|+|+|+++| .|+++|||
T Consensus 13 ~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~~~~~~~~-~~GsMG~glpaAiGaalA-----------~p~r~Vv~ 80 (202)
T PRK06163 13 MNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAGQRPQNFY-MLGSMGLAFPIALGVALA-----------QPKRRVIA 80 (202)
T ss_pred cCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhhcCCCCeE-eecccccHHHHHHHHHHh-----------CCCCeEEE
Confidence 4567788888887763 56677886 334432 33444 479999999999999999 78999999
Q ss_pred EECCCcccCcchHHHHHHhhhC-CCCeEEEEEcCC-cccccccc-cccCCcchhhccccCCcc-EEEEeCCCHHHHHHHH
Q 018048 230 FFGDGTCNNGQFFECLNMAALW-KLPIVFVVENNL-WAIGMSHL-RATSDPQIYKKGPAFGMP-GFHVDGMDVLKVREVA 305 (361)
Q Consensus 230 ~~GDGs~~~g~~~eeL~tA~~~-~LPvi~VV~NN~-y~is~~~~-~q~~~~d~~~~A~a~Gi~-~~~Vdg~D~~~v~~al 305 (361)
++|||+|+|+ .+||.|++++ ++|+++||.||+ |++..... .....+||.++|++||++ +++|+..+ ++
T Consensus 81 i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~~~~~v~~~~--el---- 152 (202)
T PRK06163 81 LEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGAGLENSHWAADEA--HF---- 152 (202)
T ss_pred EEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHCCCceEEEeCCHH--HH----
Confidence 9999999998 8999999987 689999999997 55321111 112357999999999998 67887544 54
Q ss_pred HHHHHHHHcCCCCEEEEEEEecCCCCCCCC-CCCCCCHHHHHhHHH
Q 018048 306 KEAIERARRGEGPTLVECETYRFRGHSLAD-PDELRDPGEHLVLVL 350 (361)
Q Consensus 306 ~~Al~~ar~~~gP~lIev~t~R~~gHs~~D-p~~yR~~~e~~~~~~ 350 (361)
+.+++++++.++|+||||.+.+.. + |...|++.|...-.-
T Consensus 153 ~~al~~a~~~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~~~~~ 193 (202)
T PRK06163 153 EALVDQALSGPGPSFIAVRIDDKP-----GVGTTERDPAQIRERFM 193 (202)
T ss_pred HHHHHHHHhCCCCEEEEEEecCCC-----CCCCCCCCHHHHHHHHH
Confidence 555666666789999999986532 2 344588888755443
No 28
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.88 E-value=2.6e-22 Score=190.09 Aligned_cols=136 Identities=26% Similarity=0.370 Sum_probs=117.6
Q ss_pred cccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccc
Q 018048 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG 267 (361)
Q Consensus 189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is 267 (361)
++...+|+||+++|+|+|+|+|.++. .++++|+|++|||++++|.++|+|++|++++|| +++|+.||+|++.
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~-------~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~ 171 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLL-------GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQID 171 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHh-------CCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCcccc
Confidence 44456799999999999999998876 578999999999999999999999999999998 8888888888887
Q ss_pred cccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecCCCCCCCC
Q 018048 268 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFRGHSLAD 335 (361)
Q Consensus 268 ~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~~gHs~~D 335 (361)
.........+++.+++++||++++.|+|+|+.++.+++++|. +. ++|++|++.|.+..|++...
T Consensus 172 ~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~----~~~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 172 GPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAK----KSKGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHH----HcCCCCEEEEEEeecccccCccC
Confidence 655555567899999999999999999999988877666654 33 78999999999999998543
No 29
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.88 E-value=1.5e-22 Score=178.63 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=104.1
Q ss_pred HHHHHhcCcCC-CcccCCCcccccc-----ccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCc
Q 018048 162 VMSELFGKATG-CCRGQGGSMHMFS-----KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT 235 (361)
Q Consensus 162 ~~~el~~~~~g-~~~gd~G~~h~~~-----~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs 235 (361)
++.++....++ .+.++.|++..+. .+.++.. +|+||+++|+|+|+++| .+ ++|||++|||+
T Consensus 4 ~~~~l~~~l~d~~vv~d~G~~~~~~~~~~~~~~~~~~-~gsmG~~lp~AiGa~~a-----------~~-~~Vv~i~GDG~ 70 (157)
T cd02001 4 AIAEIIEASGDTPIVSTTGYASRELYDVQDRDGHFYM-LGSMGLAGSIGLGLALG-----------LS-RKVIVVDGDGS 70 (157)
T ss_pred HHHHHHHhCCCCEEEeCCCHhHHHHHHhhcCCCCEEe-ecchhhHHHHHHHHHhc-----------CC-CcEEEEECchH
Confidence 44444444422 3445555433321 2334433 89999999999999998 44 88999999999
Q ss_pred ccCcchHHHHHHhhhC-CCCeEEEEEcCCcccccccccc--cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHH
Q 018048 236 CNNGQFFECLNMAALW-KLPIVFVVENNLWAIGMSHLRA--TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA 312 (361)
Q Consensus 236 ~~~g~~~eeL~tA~~~-~LPvi~VV~NN~y~is~~~~~q--~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~a 312 (361)
|+|+ .++|.|++++ ++|+++||.||+ +++...... ...+||.++|++||+++++|+.. .++ +++++++
T Consensus 71 f~m~--~~el~t~~~~~~~~i~~vV~nN~-~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~--~el----~~al~~a 141 (157)
T cd02001 71 LLMN--PGVLLTAGEFTPLNLILVVLDNR-AYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLL--GGL----GSEFAGL 141 (157)
T ss_pred HHhc--ccHHHHHHHhcCCCEEEEEEeCc-cccccCCcCCCCCCCCHHHHHHHCCCceEEcCCH--HHH----HHHHHHH
Confidence 9998 8999999999 599999999887 333322111 13589999999999999999754 455 5555555
Q ss_pred HcCCCCEEEEEEEec
Q 018048 313 RRGEGPTLVECETYR 327 (361)
Q Consensus 313 r~~~gP~lIev~t~R 327 (361)
++.++|++|||.+.+
T Consensus 142 ~~~~gp~vi~v~i~~ 156 (157)
T cd02001 142 LATTGPTLLHAPIAP 156 (157)
T ss_pred HhCCCCEEEEEEecC
Confidence 667899999998854
No 30
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.87 E-value=3.5e-22 Score=180.34 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=112.4
Q ss_pred CCHHHHHHHHhcCcCC--CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048 157 VPARAVMSELFGKATG--CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (361)
Q Consensus 157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~ 226 (361)
+++..+++++....++ +...|.|+..... .+.++ .+.+|+||+++|+|+|+++| .++++
T Consensus 2 l~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala-----------~~~~~ 70 (183)
T cd02005 2 LTQARLWQQVQNFLKPNDILVAETGTSWFGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALA-----------APDRR 70 (183)
T ss_pred CCHHHHHHHHHHhcCCCCEEEECCchHHHhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHh-----------CCCCe
Confidence 4567777777776543 4555655532211 12233 36789999999999999999 68899
Q ss_pred EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc--------ccCCcchhhccccCC----ccEEEEe
Q 018048 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------ATSDPQIYKKGPAFG----MPGFHVD 294 (361)
Q Consensus 227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~--------q~~~~d~~~~A~a~G----i~~~~Vd 294 (361)
|++++|||+|+|+ .+||.|++++++|+++||.||+ +++..+.. ....+|+.++|++|| +++.+|+
T Consensus 71 vv~i~GDG~f~~~--~~el~ta~~~~~p~~ivV~nN~-~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~ 147 (183)
T cd02005 71 VILLVGDGSFQMT--VQELSTMIRYGLNPIIFLINND-GYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK 147 (183)
T ss_pred EEEEECCchhhcc--HHHHHHHHHhCCCCEEEEEECC-CcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEec
Confidence 9999999999998 8899999999999888888887 33332211 113579999999999 7999997
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecC
Q 018048 295 GMDVLKVREVAKEAIERARR-GEGPTLVECETYRF 328 (361)
Q Consensus 295 g~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~ 328 (361)
.. .++ ++|++++++ .++|+|||+.+++.
T Consensus 148 ~~--~el----~~al~~a~~~~~~p~liev~~~~~ 176 (183)
T cd02005 148 TE--GEL----DEALKDALFNRDKLSLIEVILPKD 176 (183)
T ss_pred CH--HHH----HHHHHHHHhcCCCcEEEEEEcCcc
Confidence 54 454 555666665 68999999999653
No 31
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.87 E-value=1.3e-22 Score=181.78 Aligned_cols=144 Identities=22% Similarity=0.183 Sum_probs=107.9
Q ss_pred HHHHHHhcCcCC--CcccCCCcccccc--------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEE
Q 018048 161 AVMSELFGKATG--CCRGQGGSMHMFS--------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 228 (361)
Q Consensus 161 ~~~~el~~~~~g--~~~gd~G~~h~~~--------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv 228 (361)
.++.++....+. ++..|.|+...|. .+.++ ..+.+.||+++|+|+|+++| . +++||
T Consensus 5 ~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la-----------~-~~~Vv 72 (175)
T cd02009 5 ALARALPDHLPEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALA-----------T-DKPTV 72 (175)
T ss_pred HHHHHHHHhCCCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhc-----------C-CCCEE
Confidence 355556655552 4555666554431 12333 35678999999999999999 5 78999
Q ss_pred EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------c---CCcchhhccccCCccEEEEe
Q 018048 229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------T---SDPQIYKKGPAFGMPGFHVD 294 (361)
Q Consensus 229 ~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~---~~~d~~~~A~a~Gi~~~~Vd 294 (361)
|++|||+|+|+ .+||.||+++++|+++||.||+ ++++....+ . ..+||.++|++||+++++|+
T Consensus 73 ~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~-~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~ 149 (175)
T cd02009 73 LLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNN-GGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS 149 (175)
T ss_pred EEEehHHHHHh--HHHHHhccccCCCeEEEEEECC-CCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC
Confidence 99999999999 8999999999999999999998 333322111 0 25799999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 295 GMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
..+ + ++.+++++++.++|+||||.+
T Consensus 150 ~~~--e----l~~al~~a~~~~~p~lIev~v 174 (175)
T cd02009 150 SLD--E----LEQALESALAQDGPHVIEVKT 174 (175)
T ss_pred CHH--H----HHHHHHHHHhCCCCEEEEEeC
Confidence 543 4 456666666788999999976
No 32
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.87 E-value=1.6e-22 Score=212.19 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.++|..++.++...++. ++..|.|.+..|. .+.++ ++++|+||+++|+|+|+++| .|+
T Consensus 368 ~l~p~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~pd 436 (588)
T TIGR01504 368 PVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAA-----------DPK 436 (588)
T ss_pred CcCHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhh-----------CCC
Confidence 47899999998887663 5667778765542 23444 46689999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc----------------------CCcchhhc
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT----------------------SDPQIYKK 282 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~----------------------~~~d~~~~ 282 (361)
++||+++|||+|+|+ .+||.||++|++|+++||.||+ ++++.++.|. ..+||+++
T Consensus 437 r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~-~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 513 (588)
T TIGR01504 437 RNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNA-YLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKV 513 (588)
T ss_pred CcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHHHHHHHhcccccceeeccccccccccCCCCCHHHH
Confidence 999999999999999 9999999999999999999998 4444332111 14799999
Q ss_pred cccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 283 A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
|++||+++.+|+..+ ++.+++++|++..++.++|+||||.+.+.
T Consensus 514 A~a~G~~~~~V~~~~--eL~~al~~a~~~~~~~~~p~lIeV~i~~~ 557 (588)
T TIGR01504 514 AEGLGCKAIRVFKPE--EIAPAFEQAKALMAEHRVPVVVEVILERV 557 (588)
T ss_pred HHHCCCEEEEECCHH--HHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence 999999999998655 55544444443322468999999999654
No 33
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.87 E-value=7.3e-22 Score=177.30 Aligned_cols=156 Identities=22% Similarity=0.204 Sum_probs=118.9
Q ss_pred hcCCCCHHHHHHHHhcCcCC--CcccCCCccccccc-cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEE
Q 018048 153 LSKGVPARAVMSELFGKATG--CCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA 229 (361)
Q Consensus 153 l~~g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~-~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~ 229 (361)
...|.+..-++.++...+++ ++..|.|.+.+|.. +..+...+++||+++|+|+|+++| .++++||+
T Consensus 6 ~c~gc~~~~~~~~l~~~l~~~~iv~~D~G~~~~~~~~~~~~~~~~g~mG~gl~~AiGa~la-----------~p~~~Vv~ 74 (178)
T cd02008 6 LCPGCPHRPSFYALRKAFKKDSIVSGDIGCYTLGALPPLNAIDTCTCMGASIGVAIGMAKA-----------SEDKKVVA 74 (178)
T ss_pred cCCCCCChHHHHHHHHHhcCCeEEecCcCcccccccCChhhccccccCccHHHHHhhHHhh-----------CCCCCEEE
Confidence 34567777788888777663 56778887766653 233445789999999999999999 68899999
Q ss_pred EECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc-----------CCcchhhccccCCccEEEEeC-CC
Q 018048 230 FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-----------SDPQIYKKGPAFGMPGFHVDG-MD 297 (361)
Q Consensus 230 ~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~-----------~~~d~~~~A~a~Gi~~~~Vdg-~D 297 (361)
++|||+|+|.. ++||.||+++++|+++||.||+ ++++....+. ..+|+.++|++||+++++|.. .|
T Consensus 75 i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~-~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~ 152 (178)
T cd02008 75 VIGDSTFFHSG-ILGLINAVYNKANITVVILDNR-TTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYD 152 (178)
T ss_pred EecChHHhhcc-HHHHHHHHHcCCCEEEEEECCc-ceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccC
Confidence 99999998642 6999999999999999999887 4433322111 247999999999999999954 44
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 298 VLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 298 ~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
+.++ .+|++++++.++|+||++..
T Consensus 153 l~~~----~~al~~a~~~~gp~lI~v~~ 176 (178)
T cd02008 153 LKAI----REELKEALAVPGVSVIIAKR 176 (178)
T ss_pred HHHH----HHHHHHHHhCCCCEEEEEeC
Confidence 4433 35566666778999999964
No 34
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.87 E-value=2.5e-21 Score=174.29 Aligned_cols=134 Identities=18% Similarity=0.198 Sum_probs=103.5
Q ss_pred CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCC-CeEEEEEcCC-ccccccc
Q 018048 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNL-WAIGMSH 270 (361)
Q Consensus 193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~L-Pvi~VV~NN~-y~is~~~ 270 (361)
.+|+||+++|+|+|+++| .+ ++|||++|||+|+|+ .++|.|++++++ |+++||.||+ |++....
T Consensus 40 ~~g~mG~~lp~AiGaala-----------~~-~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~ 105 (179)
T cd03372 40 MLGSMGLASSIGLGLALA-----------QP-RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQ 105 (179)
T ss_pred cccchhhHHHHHHHHHhc-----------CC-CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCC
Confidence 389999999999999999 45 899999999999998 899999999995 6888887776 5543211
Q ss_pred cccc-CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHH
Q 018048 271 LRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLV 349 (361)
Q Consensus 271 ~~q~-~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~ 349 (361)
.... ..+|+.++|++||+++.+|++ ++.++ ++|+++++ ++|++|||.+.+..+ ..|-.++++.++..-+
T Consensus 106 ~~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el----~~al~~a~--~gp~lIev~~~~~~~---~~~~~~~~~~~~~~~~ 175 (179)
T cd03372 106 PTHAGKKTDLEAVAKACGLDNVATVA-SEEAF----EKAVEQAL--DGPSFIHVKIKPGNT---DVPNIPRDPVEIKNRF 175 (179)
T ss_pred CCCCCCCCCHHHHHHHcCCCeEEecC-CHHHH----HHHHHHhc--CCCEEEEEEEcCCCC---CCCCCCCCHHHHHHHH
Confidence 1111 367999999999999999985 45554 55666665 789999999976544 3366777777765544
Q ss_pred H
Q 018048 350 L 350 (361)
Q Consensus 350 ~ 350 (361)
.
T Consensus 176 ~ 176 (179)
T cd03372 176 M 176 (179)
T ss_pred H
Confidence 4
No 35
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.4e-21 Score=195.77 Aligned_cols=272 Identities=20% Similarity=0.274 Sum_probs=213.7
Q ss_pred chhHHHHHHhh-hcccc---cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC--
Q 018048 64 VVAVSEVVKEK-KVKSI---SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-- 137 (361)
Q Consensus 64 ~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~-- 137 (361)
++-++||++.+ +.++. ....+.++++.++-+.|+.+..||.+++..|++-|+.| ++|.|.+..-....|+
T Consensus 130 fs~v~~~eEr~W~a~nFE~l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG----gEGAESM~aFF~eLl~~s 205 (913)
T KOG0451|consen 130 FSYVEDIEEREWLARNFETLDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG----GEGAESMLAFFWELLRDS 205 (913)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc----cccHHHHHHHHHHHHHHH
Confidence 45667776544 33322 33567899999999999999999999999999999876 7788877544444443
Q ss_pred ----CCcEEEc-ccCCcchhhc--CCCCHHHHHHHHhcCcCC----CcccCCCccccccc--------cc--cccCCccc
Q 018048 138 ----KEDSVVS-TYRDHVHALS--KGVPARAVMSELFGKATG----CCRGQGGSMHMFSK--------EH--NLLGGFAF 196 (361)
Q Consensus 138 ----~~D~v~~-~yR~~~~~l~--~g~~~~~~~~el~~~~~g----~~~gd~G~~h~~~~--------~~--~~~~~~g~ 196 (361)
..++|++ .||++.+.+. ...+|..+++.+.|...- ...||.-+ |+-+. +. .+.++.++
T Consensus 206 a~~~ie~viigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlS-Hl~sS~dykg~~~~lhvtMlpNPSH 284 (913)
T KOG0451|consen 206 AQANIEHVIIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLS-HLHSSEDYKGLGKKLHVTMLPNPSH 284 (913)
T ss_pred HhcCcceEEEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHH-HhhhhhhhcccCCceEEEecCChhh
Confidence 4788887 5999988875 467999999999988752 23345443 22211 11 23578899
Q ss_pred cccccHHHHHHHHHHHHHHhhhh-------hcCCCceEEEEECCCccc-CcchHHHHHHhhh--CCCC-eEEEEEcCCcc
Q 018048 197 IGEGIPVATGAAFTSKYRREVLK-------EADCDHVTLAFFGDGTCN-NGQFFECLNMAAL--WKLP-IVFVVENNLWA 265 (361)
Q Consensus 197 mG~~lP~AiGaA~A~k~~~~~~~-------~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~--~~LP-vi~VV~NN~y~ 265 (361)
+...-|+|+|-+.+.+..+..++ +.+..-..|.++|||+|. +|.++|+++++-. ..+. .+++|.||+.+
T Consensus 285 LEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvg 364 (913)
T KOG0451|consen 285 LEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVG 364 (913)
T ss_pred hhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEeccccc
Confidence 99999999999999887765442 111122457789999999 9999999999864 3444 89999999999
Q ss_pred cccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCC
Q 018048 266 IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELR 340 (361)
Q Consensus 266 is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR 340 (361)
++++....++.....++|+++++|+++|+|.|+++|..+.+-|+++-|+.++.++|++.|+|..||++.|+..|-
T Consensus 365 fTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ft 439 (913)
T KOG0451|consen 365 FTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFT 439 (913)
T ss_pred ccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcccc
Confidence 999888777777888899999999999999999999999999999999999999999999999999999865554
No 36
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.87 E-value=1.2e-21 Score=176.77 Aligned_cols=132 Identities=18% Similarity=0.242 Sum_probs=100.5
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCC-CCeEEEEEcCCccccccccc
Q 018048 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LPIVFVVENNLWAIGMSHLR 272 (361)
Q Consensus 194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~-LPvi~VV~NN~y~is~~~~~ 272 (361)
+|+||+++|+|+|+++| . +++|||++|||+|+|+ .++|.|+++++ +|+++||.||+ ++++....
T Consensus 41 ~gsmG~~lpaAiGa~la-----------~-~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~-~yg~~~~q 105 (181)
T TIGR03846 41 LGSMGLASSIGLGLALA-----------T-DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNG-AYGSTGNQ 105 (181)
T ss_pred ccccccHHHHHHHHHHc-----------C-CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCC-ccccccCc
Confidence 79999999999999999 6 8899999999999998 89999999999 59999999998 43333211
Q ss_pred c--c-CCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHH-HHh
Q 018048 273 A--T-SDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE-HLV 347 (361)
Q Consensus 273 q--~-~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e-~~~ 347 (361)
+ . ..+||+++|++||+++.+ |+..+ + +++|++ +++.++|+||||.+.+... .. |...+++.| +++
T Consensus 106 ~~~~~~~~d~~~lA~a~G~~~~~~v~~~~--~----l~~al~-a~~~~~p~li~v~~~~~~~--~~-p~~~~~~~~~~~~ 175 (181)
T TIGR03846 106 PTPASRRTDLELVAKAAGIRNVEKVADEE--E----LRDALK-ALAMKGPTFIHVKVKPGNA--KV-PNIPLSPEEIKER 175 (181)
T ss_pred CCCCCCCCCHHHHHHHCCCCeEEEeCCHH--H----HHHHHH-HHcCCCCEEEEEEeCCCCC--CC-CCCCCCHHHHHHH
Confidence 1 1 367999999999999998 76543 4 455665 6677899999999965431 11 344454444 444
Q ss_pred HHH
Q 018048 348 LVL 350 (361)
Q Consensus 348 ~~~ 350 (361)
|+.
T Consensus 176 ~~~ 178 (181)
T TIGR03846 176 FME 178 (181)
T ss_pred HHH
Confidence 443
No 37
>PRK12474 hypothetical protein; Provisional
Probab=99.86 E-value=5.7e-22 Score=205.10 Aligned_cols=150 Identities=18% Similarity=0.203 Sum_probs=118.2
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc-cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~-~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~ 225 (361)
.+++..++.++....++ +++.|+|++..|. .+.++ .+..|+||+++|+|+|+++| .|++
T Consensus 340 ~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~gsmG~glpaAiGa~lA-----------~p~r 408 (518)
T PRK12474 340 ALNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAAGAAVA-----------APDR 408 (518)
T ss_pred CcCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHhhcccCCCCEEccCCCccCccHHHHHHHHHH-----------CCCC
Confidence 37788899988887664 4667777765542 23333 34459999999999999999 7899
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------------cCCcchhhccccC
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------------TSDPQIYKKGPAF 286 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------------~~~~d~~~~A~a~ 286 (361)
+|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.++.| .+.+||+++|++|
T Consensus 409 ~vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~-~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~ 485 (518)
T PRK12474 409 KVVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANR-SYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL 485 (518)
T ss_pred cEEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCC-cchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC
Confidence 99999999999999 8999999999999999999998 444332110 0135899999999
Q ss_pred CccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 287 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 287 Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
|+++.+|+..+ + +..|++++++.++|+||||.+
T Consensus 486 G~~~~rv~~~~--e----L~~al~~a~~~~~p~liev~~ 518 (518)
T PRK12474 486 GVEASRATTAE--E----FSAQYAAAMAQRGPRLIEAMI 518 (518)
T ss_pred CCeEEEeCCHH--H----HHHHHHHHHcCCCCEEEEEEC
Confidence 99999998765 4 556666677788999999964
No 38
>PRK06154 hypothetical protein; Provisional
Probab=99.86 E-value=7.3e-22 Score=206.40 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHhcCcC--C-CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048 156 GVPARAVMSELFGKAT--G-CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC 223 (361)
Q Consensus 156 g~~~~~~~~el~~~~~--g-~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~ 223 (361)
.++|..++.++....+ + ++..|.|.++.|. .++++ .+.+|+||+++|+|+|+++| .|
T Consensus 380 ~l~p~~~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-----------~p 448 (565)
T PRK06154 380 PINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLA-----------RP 448 (565)
T ss_pred CcCHHHHHHHHHHhcCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHh-----------CC
Confidence 4789999999998774 3 3556888765542 23444 35689999999999999999 78
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc----------cCCcchhhccccCCccEEEE
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA----------TSDPQIYKKGPAFGMPGFHV 293 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q----------~~~~d~~~~A~a~Gi~~~~V 293 (361)
+++|||++|||+|+|+ .+||.||++++||+++||.||+ +++.....| ...+||+++|++||+++++|
T Consensus 449 ~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V 525 (565)
T PRK06154 449 DALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNF-SMGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERV 525 (565)
T ss_pred CCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECC-ccceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEE
Confidence 9999999999999999 8999999999999999999998 444333211 12479999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
+..+ ++..++++|++.. +.++|+||||.+.+.
T Consensus 526 ~~~~--el~~al~~a~~~~-~~~~p~lIev~v~~~ 557 (565)
T PRK06154 526 EDPE--MLVPALLRALRKV-KEGTPALLEVITSEE 557 (565)
T ss_pred CCHH--HHHHHHHHHHhhc-cCCCeEEEEEEeChH
Confidence 8654 6555555554332 257899999998554
No 39
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.86 E-value=5e-22 Score=208.79 Aligned_cols=153 Identities=19% Similarity=0.374 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHhcCcC--C-CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048 156 GVPARAVMSELFGKAT--G-CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC 223 (361)
Q Consensus 156 g~~~~~~~~el~~~~~--g-~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~ 223 (361)
++++..++.++...++ + ++..|.|++..|. ++.++ .+++|+||+++|+|+|+++| .|
T Consensus 379 ~l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~p 447 (595)
T PRK09107 379 VIMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIA-----------HP 447 (595)
T ss_pred CcCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHh-----------CC
Confidence 4789999999988774 3 4567788754542 23444 45679999999999999999 78
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccE
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPG 290 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~ 290 (361)
+++||+++|||+|+|+ .+||.||++|++|+++||.||+ ++++.+..| ...+||+++|++||+++
T Consensus 448 ~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~ 524 (595)
T PRK09107 448 DALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQ-YMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVG 524 (595)
T ss_pred CCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeE
Confidence 9999999999999999 8999999999999999999998 554433211 12479999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 291 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 291 ~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
++|+..+ + +++|++++.+.++|+||||.+.+.
T Consensus 525 ~~v~~~~--e----l~~al~~a~~~~~p~lIeV~i~~~ 556 (595)
T PRK09107 525 IRCEKPG--D----LDDAIQEMIDVDKPVIFDCRVANL 556 (595)
T ss_pred EEECCHH--H----HHHHHHHHHhCCCCEEEEEEecCc
Confidence 9998765 4 566666666778999999999764
No 40
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.86 E-value=1.6e-21 Score=178.00 Aligned_cols=122 Identities=24% Similarity=0.299 Sum_probs=105.5
Q ss_pred CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc
Q 018048 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 271 (361)
Q Consensus 192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~ 271 (361)
..+|++|+++|+|+|+|+|.+++ +++++|+|++|||++++|.++|+|++|+.+++|+++||+||+|+++.+..
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~-------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~ 144 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLK-------GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG 144 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHh-------CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC
Confidence 46799999999999999998877 46789999999999999999999999999999999999999998776543
Q ss_pred cccCCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048 272 RATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (361)
Q Consensus 272 ~q~~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g 330 (361)
+..++++++|+.... ||++|++++.++++ ++++.++|++|+++|.+..|
T Consensus 145 ------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~----~a~~~~~P~~I~~~T~kg~g 194 (195)
T cd02007 145 ------TPGNLFEELGFRYIGPVDGHNIEALIKVLK----EVKDLKGPVLLHVVTKKGKG 194 (195)
T ss_pred ------CHHHHHHhcCCCccceECCCCHHHHHHHHH----HHHhCCCCEEEEEEEecccC
Confidence 466778889999885 99999988766554 45567899999999998765
No 41
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.86 E-value=5.1e-22 Score=209.48 Aligned_cols=226 Identities=18% Similarity=0.189 Sum_probs=155.6
Q ss_pred cccccchhHHHHHHhhhcccccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC
Q 018048 59 RRRLPVVAVSEVVKEKKVKSISNLLIT-KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK 137 (361)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~ 137 (361)
|...+..|..|+|.+++.+. ..+++. ..|+...++.++ +.++.. .. ...+..|..-+..++
T Consensus 312 ~~~~~~~i~id~d~~~ig~~-~~~~~~i~~D~~~~l~~L~--~~l~~~--------~~-------~~~~~~~~~~~~~~~ 373 (616)
T PRK07418 312 FASRAKVIHIDIDPAEVGKN-RRPDVPIVGDVRKVLVKLL--ERSLEP--------TT-------PPRTQAWLERINRWK 373 (616)
T ss_pred cCCCCeEEEEeCCHHHhCCc-cCCCeEEecCHHHHHHHHH--Hhhhcc--------cc-------ccchHHHHHHHHHHH
Confidence 44456678888998888873 233444 455666666554 222210 00 011222433333343
Q ss_pred CCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCC-CcccCCCcccccc------ccccc--cCCccccccccHHHHHHH
Q 018048 138 KEDSVVSTYRDHVHALSKGVPARAVMSELFGKATG-CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAA 208 (361)
Q Consensus 138 ~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g-~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA 208 (361)
.......... ..+++|..++.++....++ +...|.|++.+|. .+.++ ++++|+||+++|+|||++
T Consensus 374 ~~~~~~~~~~------~~~l~~~~v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~ 447 (616)
T PRK07418 374 QDYPLVVPPY------EGEIYPQEVLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVK 447 (616)
T ss_pred HhCcccccCC------CCCcCHHHHHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHH
Confidence 2211111110 1357899999999887765 4566888765553 23334 467899999999999999
Q ss_pred HHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc--------------
Q 018048 209 FTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-------------- 274 (361)
Q Consensus 209 ~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~-------------- 274 (361)
+| .|+++||+++|||+|+|+ .+||.||++|++||++||.||+ +++..+..|.
T Consensus 448 lA-----------~p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~ 513 (616)
T PRK07418 448 VA-----------LPDEEVICIAGDASFLMN--IQELGTLAQYGINVKTVIINNG-WQGMVRQWQESFYGERYSASNMEP 513 (616)
T ss_pred Hh-----------CCCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCceeecCCC
Confidence 99 789999999999999998 9999999999999999999998 4444332111
Q ss_pred CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 275 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 275 ~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
..+||+++|++||+++++|+..+ + +++|++++++.++|+||||.+++.
T Consensus 514 ~~~d~~~~A~a~G~~g~~V~~~~--e----l~~al~~a~~~~~p~lIeV~i~~~ 561 (616)
T PRK07418 514 GMPDFVKLAEAFGVKGMVISERD--Q----LKDAIAEALAHDGPVLIDVHVRRD 561 (616)
T ss_pred CCCCHHHHHHHCCCeEEEeCCHH--H----HHHHHHHHHhCCCCEEEEEEecCc
Confidence 24799999999999999998665 4 566677777788999999999753
No 42
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.86 E-value=6.8e-22 Score=206.87 Aligned_cols=154 Identities=23% Similarity=0.396 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.++....++ +...|.|....|. .++++ .+++|+||+++|+|+|+++| .|+
T Consensus 371 ~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~ 439 (572)
T PRK08979 371 RIKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFA-----------MPD 439 (572)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhh-----------CCC
Confidence 47899999999987764 4567778755442 23444 46789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~ 291 (361)
++|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.++.| ...+||+++|++||+++.
T Consensus 440 ~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~ 516 (572)
T PRK08979 440 ETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNR-FLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGI 516 (572)
T ss_pred CeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCC-ccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEE
Confidence 999999999999999 9999999999999999999998 444433211 124799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecCC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFR 329 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~~ 329 (361)
+|+..+ + ++.|++++.+. ++|+||||.+.+..
T Consensus 517 ~v~~~~--e----L~~al~~a~~~~~~p~lIev~i~~~~ 549 (572)
T PRK08979 517 RISDPD--E----LESGLEKALAMKDRLVFVDINVDETE 549 (572)
T ss_pred EECCHH--H----HHHHHHHHHhcCCCcEEEEEEeCCcc
Confidence 998765 4 56666666653 89999999997643
No 43
>PRK07586 hypothetical protein; Validated
Probab=99.86 E-value=7e-22 Score=204.10 Aligned_cols=150 Identities=22% Similarity=0.210 Sum_probs=117.8
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc-cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~-~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~ 225 (361)
.+++..++.+|...+++ ++..|+|++.+|. .+.++ .+..|+||+++|+|+|+++| .|++
T Consensus 336 ~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~lA-----------~p~r 404 (514)
T PRK07586 336 ALTPEAIAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVA-----------CPDR 404 (514)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCCcccccHHHHHHHHHHh-----------CCCC
Confidence 36788888888887764 4667777765543 23333 33449999999999999999 7899
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------------cc--CCcchhhccccC
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------------AT--SDPQIYKKGPAF 286 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------------q~--~~~d~~~~A~a~ 286 (361)
+|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+.. .. ..+||.++|++|
T Consensus 405 ~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~ 481 (514)
T PRK07586 405 KVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANR-AYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGM 481 (514)
T ss_pred eEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCc-hhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHC
Confidence 99999999999998 9999999999999999999998 44433210 01 246999999999
Q ss_pred CccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 287 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 287 Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
|+++++|+..+ ++++|++++++.++|+||||.+
T Consensus 482 G~~~~~V~~~~------el~~al~~a~~~~~p~liev~~ 514 (514)
T PRK07586 482 GVPARRVTTAE------EFADALAAALAEPGPHLIEAVV 514 (514)
T ss_pred CCcEEEeCCHH------HHHHHHHHHHcCCCCEEEEEEC
Confidence 99999998654 4566777777778999999964
No 44
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.86 E-value=4.2e-21 Score=174.19 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=94.3
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCC-CeEEEEEcCCcccccccc-
Q 018048 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNLWAIGMSHL- 271 (361)
Q Consensus 194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~L-Pvi~VV~NN~y~is~~~~- 271 (361)
+|+||+++|+|+|+++| .|+++|||++|||+|+|. .++|.|++++++ |+++||.||+ +++....
T Consensus 47 ~g~mG~~lpaAiGaala-----------~p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~-~yg~~~~~ 112 (188)
T cd03371 47 VGSMGHASQIALGIALA-----------RPDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNG-AHDSVGGQ 112 (188)
T ss_pred cCccccHHHHHHHHHHh-----------CCCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCc-hhhccCCc
Confidence 39999999999999999 689999999999999988 899999999997 6999999998 3333221
Q ss_pred -cccCCcchhhccccCCccE-EEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048 272 -RATSDPQIYKKGPAFGMPG-FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (361)
Q Consensus 272 -~q~~~~d~~~~A~a~Gi~~-~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g 330 (361)
.....+||.++|++||+++ .+|+ ++.++ +++++++++.++|+|||+.+.+..+
T Consensus 113 ~~~~~~~d~~~~A~a~G~~~~~~v~--~~~el----~~al~~a~~~~~p~lIev~~~~~~~ 167 (188)
T cd03371 113 PTVSFDVSLPAIAKACGYRAVYEVP--SLEEL----VAALAKALAADGPAFIEVKVRPGSR 167 (188)
T ss_pred CCCCCCCCHHHHHHHcCCceEEecC--CHHHH----HHHHHHHHhCCCCEEEEEEecCCCC
Confidence 1123579999999999998 5887 44455 5555566667899999999977654
No 45
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.86 E-value=6.9e-22 Score=173.95 Aligned_cols=116 Identities=29% Similarity=0.392 Sum_probs=96.7
Q ss_pred cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccc
Q 018048 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (361)
Q Consensus 191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~ 270 (361)
..+.++||+++|+|+|++++ .++++|++++|||+++++ +++|+||+++++|+++||.||++...+..
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a-----------~~~~~vv~~~GDG~~~~~--~~~l~ta~~~~~~~~~iv~nN~~~~~~~~ 108 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALA-----------APDRPVVCIAGDGGFMMT--GQELATAVRYGLPVIVVVFNNGGYGTIRM 108 (168)
T ss_pred CCCchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcCcHHhcc--HHHHHHHHHcCCCcEEEEEECCccHHHHH
Confidence 56789999999999999999 678999999999999996 89999999999999999999983222211
Q ss_pred c-----------cccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 271 L-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 271 ~-----------~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
. .....+|+.+++++||+++.+|++.+ +++++++++++.++|++||++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~------~l~~a~~~a~~~~~p~~i~v~~ 168 (168)
T cd00568 109 HQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPE------DLEAALAEALAAGGPALIEVKT 168 (168)
T ss_pred HHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECCHH------HHHHHHHHHHhCCCCEEEEEEC
Confidence 1 22346799999999999999998743 4566777777889999999975
No 46
>PRK05858 hypothetical protein; Provisional
Probab=99.86 E-value=1.3e-21 Score=203.57 Aligned_cols=153 Identities=22% Similarity=0.213 Sum_probs=122.6
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.++|..++.++...+++ +...|.|++..|. .+.++ .+++|+||+++|+|+|+++| .|+
T Consensus 357 ~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la-----------~p~ 425 (542)
T PRK05858 357 PIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLA-----------RPS 425 (542)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHh-----------CCC
Confidence 47888999999887764 5667777754442 12333 35689999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------cCCcchhhccccCCccEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMPGFH 292 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~~~~d~~~~A~a~Gi~~~~ 292 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ +++..+..+ ...+||.++|++||+++.+
T Consensus 426 r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 502 (542)
T PRK05858 426 RQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNG-IWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGEL 502 (542)
T ss_pred CcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCC-chhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEE
Confidence 999999999999999 9999999999999999999998 444433211 1458999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
|+..+ + +++|++++.+.++|+|||+.+.+.
T Consensus 503 v~~~~--e----L~~al~~a~~~~~p~lIev~~~~~ 532 (542)
T PRK05858 503 VTVPA--E----LGPALERAFASGVPYLVNVLTDPS 532 (542)
T ss_pred eCCHH--H----HHHHHHHHHhCCCcEEEEEEECCC
Confidence 98766 4 566666666788999999999654
No 47
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.86 E-value=1.2e-21 Score=203.56 Aligned_cols=154 Identities=21% Similarity=0.275 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.++....++ +...|.|+++.|. .+..+ ..++++||+++|+|+|+++| .++
T Consensus 358 ~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~~~ 426 (539)
T TIGR02418 358 HLHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMARYFRSYRARHLLISNGMQTLGVALPWAIGAALV-----------RPN 426 (539)
T ss_pred CcCHHHHHHHHHhhCCCCCEEEECCcHHHHHHHHhcccCCCCceecCCCccccccHHHHHHHHHHh-----------CCC
Confidence 47788999999887764 4566778765552 23333 46789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFHV 293 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~V 293 (361)
++||+++|||+|+|+ .+||.|++++++|+++||.||+ ++++.+..| ...+||.++|++||+++.+|
T Consensus 427 ~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V 503 (539)
T TIGR02418 427 TKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDN-GYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRV 503 (539)
T ss_pred CcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEE
Confidence 999999999999998 9999999999999999999997 444332111 13589999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
+..+ +++++++++++.++|+||||.+.+..
T Consensus 504 ~~~~------eL~~al~~a~~~~~p~lIev~v~~~~ 533 (539)
T TIGR02418 504 ESPD------QLEPTLRQAMEVEGPVVVDIPVDYSD 533 (539)
T ss_pred CCHH------HHHHHHHHHHhCCCCEEEEEEecCcc
Confidence 8765 45666777777889999999997543
No 48
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.86 E-value=1.1e-21 Score=205.49 Aligned_cols=156 Identities=24% Similarity=0.397 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.++....++ ++..|.|++..|. .+..+ .+++|+||+++|+|+|+++| .|+
T Consensus 371 ~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la-----------~p~ 439 (574)
T PRK07979 371 KIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMA-----------LPE 439 (574)
T ss_pred CcCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHh-----------CCC
Confidence 47899999999987754 4667777755442 23343 46789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .+||.||++++||+++||.||+ ++++.++.| ...+||.++|++||++++
T Consensus 440 ~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~-~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~ 516 (574)
T PRK07979 440 ETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNR-YLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGI 516 (574)
T ss_pred CeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCc-hhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEE
Confidence 999999999999999 9999999999999999999998 444432111 134799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
+|+..+ ++..++++|++.++ .++|+||||.+.+.
T Consensus 517 ~v~~~~--eL~~al~~a~~~~~-~~~p~lIeV~i~~~ 550 (574)
T PRK07979 517 QISHPD--ELESKLSEALEQVR-NNRLVFVDVTVDGS 550 (574)
T ss_pred EECCHH--HHHHHHHHHHhccC-CCCcEEEEEEECCc
Confidence 998655 55555554443221 37899999999763
No 49
>PRK05899 transketolase; Reviewed
Probab=99.85 E-value=4.9e-20 Score=194.78 Aligned_cols=158 Identities=23% Similarity=0.294 Sum_probs=126.3
Q ss_pred ccCCccccccccHHHHHHHHHHHHHHhhhhhc---CCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcc
Q 018048 190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWA 265 (361)
Q Consensus 190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~---~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~ 265 (361)
+...+|+||+++|+|+|+|+|.+++++..+.. ..+++|+|++|||++++|.++|+|++|++++|| +++|+.||+|+
T Consensus 113 ~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~ 192 (624)
T PRK05899 113 VETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRIS 192 (624)
T ss_pred eeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCc
Confidence 33568999999999999999988764322110 127899999999999999999999999999999 78888888898
Q ss_pred cccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC-CCCCC----
Q 018048 266 IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD-PDELR---- 340 (361)
Q Consensus 266 is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D-p~~yR---- 340 (361)
++.... ....+++.+++++||+++++|||+|+.++.+++++| ++.++|++|++.|+|..||+..+ +..|.
T Consensus 193 ~~~~~~-~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a----~~~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~ 267 (624)
T PRK05899 193 IDGPTE-GWFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEA----KASTKPTLIIAKTIIGKGAPNKEGTHKVHGAPL 267 (624)
T ss_pred cccccc-ccccccHHHHhccCCCeEEEECCCCHHHHHHHHHHH----HhcCCCEEEEEEeEeccCCccccCCCcccCCCC
Confidence 876544 334678999999999999999999998877666554 44579999999999999998664 43554
Q ss_pred CHHHHHhHHHhh
Q 018048 341 DPGEHLVLVLFI 352 (361)
Q Consensus 341 ~~~e~~~~~~~~ 352 (361)
+++|.+.+....
T Consensus 268 ~~~~~~~~~~~l 279 (624)
T PRK05899 268 GAEEIAAAKKEL 279 (624)
T ss_pred CHHHHHHHHHHc
Confidence 367777776543
No 50
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.85 E-value=1.5e-21 Score=204.80 Aligned_cols=152 Identities=20% Similarity=0.363 Sum_probs=120.6
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.++|..++.++....++ +...|.|++..|. .+.++ .+++|+||+++|+|+|+++| .|+
T Consensus 387 ~i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~p~ 455 (587)
T PRK06965 387 IIKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMA-----------HPD 455 (587)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCC
Confidence 47888999999887764 4566777654442 23444 46789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------c-CCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------T-SDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~-~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ +++..++.| . ..+||+++|++||++++
T Consensus 456 r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~ 532 (587)
T PRK06965 456 DDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNR-YLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGM 532 (587)
T ss_pred CcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECC-cchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEE
Confidence 999999999999999 9999999999999999999998 444433211 1 25799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEec
Q 018048 292 HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYR 327 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R 327 (361)
+|+..+ ++ ++|++++++ .++|+||||.+.+
T Consensus 533 ~v~~~~--eL----~~al~~a~~~~~~p~lieV~i~~ 563 (587)
T PRK06965 533 RIEKTS--DV----EPALREALRLKDRTVFLDFQTDP 563 (587)
T ss_pred EECCHH--HH----HHHHHHHHhcCCCcEEEEEEecc
Confidence 998665 54 555555554 4789999999975
No 51
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.85 E-value=1.6e-21 Score=204.12 Aligned_cols=152 Identities=22% Similarity=0.373 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
++++..++.++....++ ++..|+|++..|. .+.++ .+++|+||+++|+|+|+++| .++
T Consensus 372 ~l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA-----------~p~ 440 (570)
T PRK06725 372 ELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLA-----------KEE 440 (570)
T ss_pred CcCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhh-----------cCC
Confidence 47889999999887763 5667778755442 23344 46779999999999999999 689
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc------------ccCCcchhhccccCCccEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFH 292 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~------------q~~~~d~~~~A~a~Gi~~~~ 292 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ +++..+.. ....+||.++|++||+++.+
T Consensus 441 ~~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~-~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 517 (570)
T PRK06725 441 ELVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNK-FLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLR 517 (570)
T ss_pred CeEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECC-ccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEE
Confidence 999999999999998 8999999999999999999998 44433211 11357999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
|+..+ + +++|++++++.++|+||||.+.+
T Consensus 518 v~~~~--~----l~~al~~a~~~~~p~liev~id~ 546 (570)
T PRK06725 518 ATNST--E----AKQVMLEAFAHEGPVVVDFCVEE 546 (570)
T ss_pred eCCHH--H----HHHHHHHHHhCCCCEEEEEEeCC
Confidence 96543 4 56677777778999999999975
No 52
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.85 E-value=9.3e-22 Score=206.46 Aligned_cols=178 Identities=20% Similarity=0.216 Sum_probs=132.6
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++.+++.++....++ ++..|.|.+..|. .+.++ .+++|+||+++|+|+|+++| .++
T Consensus 385 ~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la-----------~p~ 453 (588)
T PRK07525 385 YMHPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIA-----------CPD 453 (588)
T ss_pred CcCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHh-----------CCC
Confidence 47899999999888774 4667777654432 23344 35789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------c-CCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------T-SDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~-~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+..| . ..+||.++|++||++++
T Consensus 454 r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 530 (588)
T PRK07525 454 RPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNY-QWGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGV 530 (588)
T ss_pred CcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCc-hhHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEE
Confidence 999999999999999 9999999999999999999997 433322111 1 24799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHHHh
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVLF 351 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~~ 351 (361)
+|+..+ ++..+++++++.. +.++|+||||.+.+..|-+.. ...+|++.++-.|.++
T Consensus 531 ~v~~~~--el~~al~~a~~~~-~~~~p~lIev~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 586 (588)
T PRK07525 531 VVDTQE--ELGPALKRAIDAQ-NEGKTTVIEIMCNQELGEPFR-RDALKKPVRVLGKYKD 586 (588)
T ss_pred EECCHH--HHHHHHHHHHhcC-CCCCcEEEEEEeccccCCchH-hhhhcccccccccccc
Confidence 997554 6655555555432 235899999999877642222 2457777776555443
No 53
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.85 E-value=2e-21 Score=203.40 Aligned_cols=153 Identities=23% Similarity=0.356 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.++|..++.+|....++ ++..|.|++..|. .+..+ .+++|+||+++|+|+|+++| .++
T Consensus 373 ~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la-----------~p~ 441 (574)
T PRK06466 373 IIKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLA-----------FPD 441 (574)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHh-----------CCC
Confidence 47889999999887764 4566777754442 23344 46789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+..| ...+||.++|++||+++.
T Consensus 442 r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 518 (574)
T PRK06466 442 QDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNG-ALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGI 518 (574)
T ss_pred CeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEE
Confidence 999999999999999 9999999999999999999998 444333211 124799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYRF 328 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~ 328 (361)
+|+..+ + +++|++++.+. ++|+||||.+.+.
T Consensus 519 ~v~~~~--e----l~~al~~a~~~~~~p~lIev~i~~~ 550 (574)
T PRK06466 519 RITDLK--D----LKPKLEEAFAMKDRLVFIDIYVDRS 550 (574)
T ss_pred EECCHH--H----HHHHHHHHHhcCCCcEEEEEEeCCc
Confidence 998765 4 45566666654 8999999999763
No 54
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.85 E-value=1.6e-21 Score=204.83 Aligned_cols=158 Identities=21% Similarity=0.206 Sum_probs=121.2
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.+|....++ ++..|.|...+|. .+..+ .+++|+||+++|+|+|+++| .++
T Consensus 369 ~l~~~~~~~~l~~~l~~d~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la-----------~p~ 437 (591)
T PRK11269 369 PIKPQRVYEEMNKAFGRDTCYVSTIGLSQIAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAA-----------DPD 437 (591)
T ss_pred CcCHHHHHHHHHHhcCCCcEEEECCcHHHHHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhh-----------CCC
Confidence 47888999998887764 4566777655442 22333 36789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc----------c------------CCcchhhc
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA----------T------------SDPQIYKK 282 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q----------~------------~~~d~~~~ 282 (361)
++|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+..| . .++||.++
T Consensus 438 r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~l 514 (591)
T PRK11269 438 RNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNA-YLGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKV 514 (591)
T ss_pred CcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCC-chhHHHHHHHHhccCccceeeccccccccccCCCCCHHHH
Confidence 999999999999999 9999999999999999999998 333322111 0 23799999
Q ss_pred cccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 283 A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
|++||+++.+|+..+ ++..++++|++...+.++|+||||.+.+..
T Consensus 515 A~a~G~~~~~v~~~~--eL~~al~~a~~~~~~~~gp~lieV~v~~~~ 559 (591)
T PRK11269 515 AEGLGCKAIRVFKPE--DIAPALEQAKALMAEFRVPVVVEVILERVT 559 (591)
T ss_pred HHHCCCeEEEECCHH--HHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 999999999997665 655555554433334789999999997643
No 55
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.85 E-value=2.3e-21 Score=202.92 Aligned_cols=153 Identities=21% Similarity=0.279 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.++|..++.++....++ +...|.|....|. .+.++ .+++|+||+++|+|+|+++| .++
T Consensus 358 ~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la-----------~p~ 426 (574)
T PRK09124 358 PIHPQYLARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAA-----------HPG 426 (574)
T ss_pred cCCHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHh-----------CCC
Confidence 36788888888877664 4567777665442 23344 36789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------ccCCcchhhccccCCccEEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHV 293 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q~~~~d~~~~A~a~Gi~~~~V 293 (361)
++|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.... ....+||+++|++||+++++|
T Consensus 427 r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 503 (574)
T PRK09124 427 RQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNS-VLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRV 503 (574)
T ss_pred CeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCC-ccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence 999999999999999 9999999999999999999997 33332111 113579999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
+..+ + ++.|++++.+.++|+||||.+.+.
T Consensus 504 ~~~~--e----L~~al~~a~~~~~p~lIev~i~~~ 532 (574)
T PRK09124 504 EKAS--E----LDGALQRAFAHDGPALVDVVTAKQ 532 (574)
T ss_pred CCHH--H----HHHHHHHHHhCCCCEEEEEEecCc
Confidence 8665 4 556666667778999999999754
No 56
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.85 E-value=1.4e-21 Score=204.69 Aligned_cols=158 Identities=22% Similarity=0.241 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
++++..++.++....+. ++..|.|+++.|. .+.++ .+++|+||+++|+|+|+++| .|+
T Consensus 380 ~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~ 448 (579)
T TIGR03457 380 WLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIA-----------APD 448 (579)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhh-----------CCC
Confidence 47899999999887764 4667778764442 23344 35679999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------cCC-cchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSD-PQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~~~-~d~~~~A~a~Gi~~~ 291 (361)
++|||++|||+|+|+ .+||.||++++||+++||.||+ ++++.+..| ... +||+++|++||++++
T Consensus 449 ~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~-~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~ 525 (579)
T TIGR03457 449 RPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNR-QWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGV 525 (579)
T ss_pred CcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECc-chHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEE
Confidence 999999999999999 8999999999999999999998 444432111 122 599999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g 330 (361)
+|+..+ ++..++++|++.. +.++|+||||.+.+..+
T Consensus 526 ~v~~~~--el~~al~~a~~~~-~~~~p~lieV~v~~~~~ 561 (579)
T TIGR03457 526 VVDKPE--DVGPALKKAIAAQ-AEGKTTVIEIVCTRELG 561 (579)
T ss_pred EECCHH--HHHHHHHHHHhhC-CCCCcEEEEEEeCCCcC
Confidence 998655 6655555555432 25789999999977553
No 57
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.85 E-value=2.5e-21 Score=202.14 Aligned_cols=153 Identities=21% Similarity=0.331 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHhcCcCC-CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048 156 GVPARAVMSELFGKATG-CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g-~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~ 225 (361)
.+++..++.++....++ ++..|.|++..|. .+.++ .+++|+||+++|+|+|+++| .+++
T Consensus 365 ~l~~~~~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~ 433 (561)
T PRK06048 365 VIKPQYVIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVG-----------KPDK 433 (561)
T ss_pred CcCHHHHHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHh-----------CCCC
Confidence 46788899998877765 4556777654432 23344 45679999999999999999 6899
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------c--cCCcchhhccccCCccEEE
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A--TSDPQIYKKGPAFGMPGFH 292 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q--~~~~d~~~~A~a~Gi~~~~ 292 (361)
+|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+.. . ...+||.++|++||+++++
T Consensus 434 ~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~-~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 510 (561)
T PRK06048 434 TVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNG-YLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLR 510 (561)
T ss_pred cEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECC-ccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEE
Confidence 99999999999999 8999999999999999999998 44433211 0 1357999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
|+..+ ++++|++++.+.++|+||||.+.+.
T Consensus 511 v~t~~------el~~al~~a~~~~~p~liev~~~~~ 540 (561)
T PRK06048 511 VEKPS------EVRPAIEEAVASDRPVVIDFIVECE 540 (561)
T ss_pred ECCHH------HHHHHHHHHHhCCCCEEEEEEecCc
Confidence 98766 4566666666788999999999763
No 58
>PRK07524 hypothetical protein; Provisional
Probab=99.85 E-value=2.2e-21 Score=201.42 Aligned_cols=154 Identities=21% Similarity=0.286 Sum_probs=120.6
Q ss_pred CCHHHHHHHHhcCcCC-CcccCCCcccccc-------ccccc---cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048 157 VPARAVMSELFGKATG-CCRGQGGSMHMFS-------KEHNL---LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (361)
Q Consensus 157 ~~~~~~~~el~~~~~g-~~~gd~G~~h~~~-------~~~~~---~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~ 225 (361)
.++.+++.++....++ +...|.|+..++. .+..+ .+++|+||+++|+|+|+++| .|++
T Consensus 358 ~~~~~~~~~l~~~l~~~~i~~d~g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA-----------~p~~ 426 (535)
T PRK07524 358 AAQVALLDTILAALPDAIFVGDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALG-----------APER 426 (535)
T ss_pred cCHHHHHHHHHHhCCCCEEEeCCcHHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHh-----------CCCC
Confidence 4567788888877765 4556777644431 23333 35679999999999999999 7899
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc-----------cccCCcchhhccccCCccEEEEe
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-----------RATSDPQIYKKGPAFGMPGFHVD 294 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~-----------~q~~~~d~~~~A~a~Gi~~~~Vd 294 (361)
+|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+. .....+||.++|++||+++++|+
T Consensus 427 ~vv~i~GDG~f~~~--~~el~ta~~~~lpi~~vV~NN~-~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~ 503 (535)
T PRK07524 427 PVVCLVGDGGLQFT--LPELASAVEADLPLIVLLWNND-GYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGCAAERVA 503 (535)
T ss_pred cEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECC-chHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC
Confidence 99999999999998 8999999999999999999996 3333221 11245799999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048 295 GMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (361)
Q Consensus 295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g 330 (361)
.. .+ +++|++++++.++|+||||.++|+.+
T Consensus 504 ~~--~e----l~~al~~a~~~~~p~liev~~~~~~~ 533 (535)
T PRK07524 504 DL--EQ----LQAALRAAFARPGPTLIEVDQACWFA 533 (535)
T ss_pred CH--HH----HHHHHHHHHhCCCCEEEEEECCcccc
Confidence 44 34 56677777778999999999999875
No 59
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.85 E-value=1.9e-21 Score=202.15 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~ 225 (361)
.+++..++.++...+++ ++..|.|++.++. .+.++ .+++|+||+++|+|+|+++| .|++
T Consensus 355 ~l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~ 423 (539)
T TIGR03393 355 ALSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTA-----------CPNR 423 (539)
T ss_pred ccCHHHHHHHHHHhcCCCCEEEEccCchhhhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhc-----------CCCC
Confidence 37889999999887763 5667777754321 12233 46789999999999999999 7899
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc--------ccCCcchhhccccCCcc----EEEE
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------ATSDPQIYKKGPAFGMP----GFHV 293 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~--------q~~~~d~~~~A~a~Gi~----~~~V 293 (361)
+|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+.. ....+||.++|++||++ +++|
T Consensus 424 ~vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~-~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v 500 (539)
T TIGR03393 424 RVILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNE-GYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRV 500 (539)
T ss_pred CeEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCC-ceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEe
Confidence 99999999999999 9999999999999999999998 44443221 12357999999999996 8999
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
+..+ ++++|++++++.++|+||||.+.+
T Consensus 501 ~~~~------el~~al~~a~~~~~p~liev~i~~ 528 (539)
T TIGR03393 501 SEAE------QLADVLEKVAAHERLSLIEVVLPK 528 (539)
T ss_pred ccHH------HHHHHHHHHhccCCeEEEEEEcCc
Confidence 8765 456677777788999999999853
No 60
>PTZ00089 transketolase; Provisional
Probab=99.85 E-value=5.5e-20 Score=195.14 Aligned_cols=157 Identities=22% Similarity=0.210 Sum_probs=129.5
Q ss_pred cCCccccccccHHHHHHHHHHHHHHhhhhhc---CCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCccc
Q 018048 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAI 266 (361)
Q Consensus 191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~---~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~i 266 (361)
...+|++|.+++.|+|+|+|.|+++..+... ..+..|+|++|||++++|.++|+|++|+.++|| +|+||+||+|++
T Consensus 112 ~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i 191 (661)
T PTZ00089 112 EVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITI 191 (661)
T ss_pred ccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCccc
Confidence 3468999999999999999999875332211 126789999999999999999999999999998 899999999999
Q ss_pred ccccccccCCcchhhccccCCccEEEE-eCC-CHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCC----CC
Q 018048 267 GMSHLRATSDPQIYKKGPAFGMPGFHV-DGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE----LR 340 (361)
Q Consensus 267 s~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~-D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~----yR 340 (361)
+.+...+ ...++.++.++|||+++.| ||+ |+.++++++++|.+. .++|++|+++|+|..||.+.++.. ++
T Consensus 192 ~~~~~~~-~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~ 267 (661)
T PTZ00089 192 DGNTDLS-FTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAPL 267 (661)
T ss_pred ccCcccc-cCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCCC
Confidence 8876654 3568899999999999999 999 999988777665432 268999999999999987776543 56
Q ss_pred CHHHHHhHHHh
Q 018048 341 DPGEHLVLVLF 351 (361)
Q Consensus 341 ~~~e~~~~~~~ 351 (361)
+++|++.+...
T Consensus 268 ~~~~~~~~~~~ 278 (661)
T PTZ00089 268 GDEDIAQVKEL 278 (661)
T ss_pred CHHHHHHHHHH
Confidence 77887777664
No 61
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.85 E-value=8.4e-22 Score=172.23 Aligned_cols=115 Identities=33% Similarity=0.500 Sum_probs=96.5
Q ss_pred cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccc
Q 018048 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270 (361)
Q Consensus 191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~ 270 (361)
..+.++||+++|+|+|+++| .|+++||+++|||+|.++ .++|.|++++++|+++||.||+ +++...
T Consensus 24 ~~~~g~mG~~~~~aiGa~~a-----------~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~-~~~~~~ 89 (153)
T PF02775_consen 24 SGGFGSMGYALPAAIGAALA-----------RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNG-GYGMTG 89 (153)
T ss_dssp STTTT-TTTHHHHHHHHHHH-----------STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESS-BSHHHH
T ss_pred CCCccccCCHHHhhhHHHhh-----------cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCC-cceEec
Confidence 46889999999999999999 789999999999999998 9999999999999999999998 443322
Q ss_pred ccc---------------cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048 271 LRA---------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 271 ~~q---------------~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev 323 (361)
..+ ...+|+.++|++||+++++|+..|++++ +++++++++.++|+||||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el----~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 90 GQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEEL----EEALREALESGGPAVIEV 153 (153)
T ss_dssp HHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHH----HHHHHHHHHSSSEEEEEE
T ss_pred cccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHH----HHHHHHHHhCCCcEEEEc
Confidence 111 3467999999999999999998876765 455556667899999997
No 62
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.85 E-value=2.5e-21 Score=203.59 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCccccccc-------cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~-------~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
+++|..++.++....+. +...|.|++..|.. +.++ ++++|+||+++|+|+|+++| .|+
T Consensus 365 ~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la-----------~p~ 433 (597)
T PRK08273 365 PVNPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFA-----------HPD 433 (597)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHh-----------CCC
Confidence 58899999999887764 45677887655421 2233 46789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhC-----CCCeEEEEEcCCccccccccc--------------ccCCcchhhcccc
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALW-----KLPIVFVVENNLWAIGMSHLR--------------ATSDPQIYKKGPA 285 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~-----~LPvi~VV~NN~y~is~~~~~--------------q~~~~d~~~~A~a 285 (361)
++|||++|||+|+|+. .+||.||++| ++|+++||.||+ ++++.+.. ..+.+||+++|++
T Consensus 434 ~~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a 511 (597)
T PRK08273 434 RPVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNR-DLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAEL 511 (597)
T ss_pred CcEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCC-cchHHHHHHHHhcCCCcccccccCCCCCHHHHHHH
Confidence 9999999999999872 3999999999 899999999998 44332211 0134789999999
Q ss_pred CCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 286 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 286 ~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
||+++++|+..+ + ++.+++++.+.++|+||||.+.+..
T Consensus 512 ~G~~~~~v~~~~--e----L~~al~~a~~~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 512 LGLKGIRVDDPE--Q----LGAAWDEALAADRPVVLEVKTDPNV 549 (597)
T ss_pred CCCEEEEECCHH--H----HHHHHHHHHhCCCCEEEEEEeCCCC
Confidence 999999998665 4 5666666667799999999997653
No 63
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.85 E-value=2.6e-21 Score=202.41 Aligned_cols=154 Identities=20% Similarity=0.325 Sum_probs=123.1
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.+|....++ ++..+.|++.+|. .+.++ .+++|+||+++|+|+|+++| .++
T Consensus 371 ~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la-----------~p~ 439 (572)
T PRK06456 371 KLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLA-----------RPD 439 (572)
T ss_pred CcCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHh-----------CCC
Confidence 47889999999887764 4556777655442 23343 46789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+..| ...+||.++|++||++++
T Consensus 440 ~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~-~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~ 516 (572)
T PRK06456 440 KVVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNR-TLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGF 516 (572)
T ss_pred CeEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECC-chHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeE
Confidence 999999999999999 8999999999999999999998 444433211 124799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
+|+..+ + ++++++++++.++|+||||.+.+..
T Consensus 517 ~v~~~~--e----L~~al~~a~~~~~p~lIev~v~~~~ 548 (572)
T PRK06456 517 NVTTYE--D----IEKSLKSAIKEDIPAVIRVPVDKEE 548 (572)
T ss_pred EeCCHH--H----HHHHHHHHHhCCCCEEEEEEeCccc
Confidence 998665 4 5666777777789999999998643
No 64
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.85 E-value=5e-21 Score=174.29 Aligned_cols=135 Identities=23% Similarity=0.203 Sum_probs=100.5
Q ss_pred CcccCCCccccccc-cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCc-ccCcchHHHHHHhhh
Q 018048 173 CCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAAL 250 (361)
Q Consensus 173 ~~~gd~G~~h~~~~-~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs-~~~g~~~eeL~tA~~ 250 (361)
++..|.|.. .|.. -.++....++||+++|+|+|+++| .|+++||+++|||+ ++|+ .+||.||++
T Consensus 29 ii~~D~G~~-~~~~~~~~~~~~~g~mG~glpaAiGa~la-----------~p~r~Vv~i~GDGs~f~m~--~~eL~ta~~ 94 (193)
T cd03375 29 VVVSGIGCS-SRLPYYFNTYGFHTLHGRALAVATGVKLA-----------NPDLTVIVVSGDGDLAAIG--GNHFIHAAR 94 (193)
T ss_pred EEEeCCChh-ceehhhccccchhhhhccHHHHHHHHHHh-----------CCCCeEEEEeccchHhhcc--HHHHHHHHH
Confidence 466777764 3332 122334458999999999999999 79999999999999 5788 999999999
Q ss_pred CCCCeEEEEEcCCccccccccccc------------------CCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHH
Q 018048 251 WKLPIVFVVENNLWAIGMSHLRAT------------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIER 311 (361)
Q Consensus 251 ~~LPvi~VV~NN~y~is~~~~~q~------------------~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ 311 (361)
+++|+++||.||+ +++.....+. ..+|+.++|++||++++ ++.-.++.++ +.|+++
T Consensus 95 ~~lpv~iiVlnN~-~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el----~~al~~ 169 (193)
T cd03375 95 RNIDITVIVHNNQ-IYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQL----KEIIKK 169 (193)
T ss_pred hCCCeEEEEEcCc-ccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHH----HHHHHH
Confidence 9999999999998 4444332110 13689999999999996 2223345555 445555
Q ss_pred HHcCCCCEEEEEEEe
Q 018048 312 ARRGEGPTLVECETY 326 (361)
Q Consensus 312 ar~~~gP~lIev~t~ 326 (361)
+++.++|+|||+.+.
T Consensus 170 al~~~gp~vIev~~~ 184 (193)
T cd03375 170 AIQHKGFSFVEVLSP 184 (193)
T ss_pred HHhcCCCEEEEEECC
Confidence 556789999999763
No 65
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.85 E-value=5.5e-21 Score=200.16 Aligned_cols=154 Identities=21% Similarity=0.307 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.+|....++ ++..|.|....|. .+..+ .+++|+||+++|+|+|+++| .|+
T Consensus 358 ~i~~~~~~~~l~~~l~~d~ii~~D~g~~~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la-----------~p~ 426 (575)
T TIGR02720 358 PLQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLN-----------YPD 426 (575)
T ss_pred CcCHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHh-----------CCC
Confidence 47888999999887764 4567777755553 22333 35689999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------ccCCcchhhccccCCccEEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHV 293 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q~~~~d~~~~A~a~Gi~~~~V 293 (361)
++||+++|||+|+|+ .+||.|++++++|+++||.||+ ++++.... ....+||+++|++||+++.+|
T Consensus 427 r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~-~yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v 503 (575)
T TIGR02720 427 RQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNC-TYGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRV 503 (575)
T ss_pred CcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEe
Confidence 999999999999998 9999999999999999999888 34432211 123579999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHH--cCCCCEEEEEEEecCC
Q 018048 294 DGMDVLKVREVAKEAIERAR--RGEGPTLVECETYRFR 329 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar--~~~gP~lIev~t~R~~ 329 (361)
+..+ ++ +++++++. +.++|+||||.++...
T Consensus 504 ~~~~--el----~~al~~a~~~~~~~p~liev~i~~~~ 535 (575)
T TIGR02720 504 NKIE--QL----PAVFEQAKAIKQGKPVLIDAKITGDR 535 (575)
T ss_pred CCHH--HH----HHHHHHHHhhCCCCcEEEEEEeCCCC
Confidence 8665 55 44555555 6789999999997643
No 66
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.85 E-value=2.9e-21 Score=202.61 Aligned_cols=152 Identities=23% Similarity=0.432 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHhcCcCC-CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048 156 GVPARAVMSELFGKATG-CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g-~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~ 226 (361)
++++.+++.++....++ +...|+|.+..|. .+.++ .+++|+||+++|+|+|+++| .++++
T Consensus 382 ~l~~~~~~~~l~~~~~d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala-----------~p~~~ 450 (585)
T CHL00099 382 SLSPQEVINEISQLAPDAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIA-----------HPNEL 450 (585)
T ss_pred CcCHHHHHHHHHhhCCCeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHh-----------CCCCe
Confidence 58899999999887665 4567777654442 23333 46789999999999999999 68999
Q ss_pred EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc--------------cCCcchhhccccCCccEEE
Q 018048 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA--------------TSDPQIYKKGPAFGMPGFH 292 (361)
Q Consensus 227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q--------------~~~~d~~~~A~a~Gi~~~~ 292 (361)
||+++|||+|+|+ .+||.||+++++|+++||.||+ +++..+..| ...+||.++|++||+++.+
T Consensus 451 vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~ 527 (585)
T CHL00099 451 VICISGDASFQMN--LQELGTIAQYNLPIKIIIINNK-WQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLR 527 (585)
T ss_pred EEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEE
Confidence 9999999999999 9999999999999999999998 444432211 1247999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
|+..+ ++++|++++++.++|+||||.+.+
T Consensus 528 v~~~~------el~~al~~a~~~~~p~liev~v~~ 556 (585)
T CHL00099 528 IKSRK------DLKSSLKEALDYDGPVLIDCQVIE 556 (585)
T ss_pred eCCHH------HHHHHHHHHHhCCCCEEEEEEECC
Confidence 98755 456677777778899999999975
No 67
>PRK08617 acetolactate synthase; Reviewed
Probab=99.85 E-value=2.7e-21 Score=201.45 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
++++..++.+|....++ ++..|.|+++.|. .+.++ .+++|+||+++|+|+|+++| .++
T Consensus 364 ~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~ 432 (552)
T PRK08617 364 AVHPLRIIRALQDIVTDDTTVTVDVGSHYIWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALV-----------RPG 432 (552)
T ss_pred CcCHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHhccccCCCeEEecCccccccccccHHHhhHhh-----------cCC
Confidence 47888899998887764 4567777765542 23333 46789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFHV 293 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~V 293 (361)
++|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+..| ...+||.++|++||+++.+|
T Consensus 433 ~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 509 (552)
T PRK08617 433 KKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDG-HYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRV 509 (552)
T ss_pred CcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECC-ccchHHHHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEE
Confidence 999999999999999 9999999999999999999998 555443211 13579999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
+..+ ++++|++++++.++|+||||.+++..
T Consensus 510 ~~~~------eL~~al~~a~~~~~p~liev~~~~~~ 539 (552)
T PRK08617 510 TSPD------ELEPVLREALATDGPVVIDIPVDYSD 539 (552)
T ss_pred CCHH------HHHHHHHHHHhCCCcEEEEEEecccc
Confidence 8765 45667777777889999999997643
No 68
>PLN02470 acetolactate synthase
Probab=99.85 E-value=2.8e-21 Score=202.76 Aligned_cols=153 Identities=24% Similarity=0.335 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.++|..++.++....++ ++..|.|++..|. .+.++ .+++|+||+++|+|+|+++| .|+
T Consensus 376 ~l~~~~~~~~l~~~~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la-----------~p~ 444 (585)
T PLN02470 376 AIPPQYAIQVLDELTDGNAIISTGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAA-----------NPD 444 (585)
T ss_pred CcCHHHHHHHHHhhCCCCEEEEECCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHh-----------CCC
Confidence 47888999999887764 4556777655442 23444 46779999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------c-C--------Ccchhhccc
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------T-S--------DPQIYKKGP 284 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~-~--------~~d~~~~A~ 284 (361)
++|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.++.| . . .+||+++|+
T Consensus 445 ~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~-~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~ 521 (585)
T PLN02470 445 AIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQ-HLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAE 521 (585)
T ss_pred CcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-cchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHH
Confidence 999999999999999 9999999999999999999998 444332110 0 1 279999999
Q ss_pred cCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 285 AFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 285 a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
+||+++.+|+..+ + +++|++++++.++|+||||.+.+.
T Consensus 522 a~G~~~~~v~~~~--e----l~~al~~a~~~~~p~lieV~i~~~ 559 (585)
T PLN02470 522 GCKIPAARVTRKS--D----LREAIQKMLDTPGPYLLDVIVPHQ 559 (585)
T ss_pred HCCCeEEEECCHH--H----HHHHHHHHHhCCCCEEEEEEeCCc
Confidence 9999999998765 4 566666666778999999999753
No 69
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.85 E-value=5.5e-21 Score=199.66 Aligned_cols=154 Identities=25% Similarity=0.392 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.++|..++.++....++ +...|.|++..|. .+.++ .+++|+||+++|+|+|+++| .|+
T Consensus 364 ~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la-----------~p~ 432 (563)
T PRK08527 364 VLKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLA-----------VPD 432 (563)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCC
Confidence 37888999999888764 4667778654442 23344 46679999999999999999 688
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~ 291 (361)
++|||++|||+|+|+ .+||.||++++||+++||.||+ +++..+..| ...+||.++|++||++++
T Consensus 433 ~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~-~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~ 509 (563)
T PRK08527 433 KVVINFTGDGSILMN--IQELMTAVEYKIPVINIILNNN-FLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGIGF 509 (563)
T ss_pred CcEEEEecCchhccc--HHHHHHHHHhCCCeEEEEEECC-cchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEE
Confidence 999999999999998 8999999999999999999998 444433211 124799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
+|+..+ + +++|++++++.++|+||||.+++..
T Consensus 510 ~v~~~~--e----l~~al~~a~~~~~p~lieV~v~~~~ 541 (563)
T PRK08527 510 RVTTKE--E----FDKALKEALESDKVALIDVKIDRFE 541 (563)
T ss_pred EECCHH--H----HHHHHHHHHhCCCCEEEEEEECCcc
Confidence 998665 4 5666777777789999999998744
No 70
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.84 E-value=3.4e-21 Score=200.65 Aligned_cols=153 Identities=22% Similarity=0.364 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC-
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC- 223 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~- 223 (361)
.+++..++.++....++ ++..|.|....|. .+.++ .+++|+||+++|+|+|+++| .+
T Consensus 346 ~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~ 414 (549)
T PRK06457 346 PMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFA-----------VEN 414 (549)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhc-----------CCC
Confidence 46788899999887764 4556777755442 12333 35689999999999999999 67
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEE
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFH 292 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~ 292 (361)
+++|||++|||+|+|+ .+||.||++++||+++||.||+ ++++.+..| ...+||.++|++||+++.+
T Consensus 415 ~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 491 (549)
T PRK06457 415 KRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNS-KLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFR 491 (549)
T ss_pred CCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECC-ccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEE
Confidence 8999999999999999 9999999999999999999998 444432211 1257999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
|+..+ + ++.+++++.+.++|+||||.+.+.
T Consensus 492 v~~~~--e----l~~al~~a~~~~~p~lIeV~i~~~ 521 (549)
T PRK06457 492 LEEPK--E----AEEIIEEFLNTKGPAVLDAIVDPN 521 (549)
T ss_pred eCCHH--H----HHHHHHHHHhCCCCEEEEEEeCcc
Confidence 98654 4 566666677788999999999753
No 71
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.84 E-value=3.5e-21 Score=201.48 Aligned_cols=153 Identities=25% Similarity=0.450 Sum_probs=122.6
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.++|..++.+|....+. +...|.|++..|. .+.++ .+++|+||+++|+|+|+++| .|+
T Consensus 374 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala-----------~p~ 442 (571)
T PRK07710 374 SIKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLA-----------KPD 442 (571)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCC
Confidence 47888999999887753 4567777654432 22333 46779999999999999999 689
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .+||+||+++++|+++||.||+ +++..+..| ...+||+++|++||+++.
T Consensus 443 ~~vv~i~GDGsf~m~--~~eL~ta~r~~lpi~ivV~NN~-~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~ 519 (571)
T PRK07710 443 ETVVAIVGDGGFQMT--LQELSVIKELSLPVKVVILNNE-ALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGV 519 (571)
T ss_pred CcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECc-hHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEE
Confidence 999999999999998 8999999999999999999998 444332111 135799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
+|+..+ +++.|++++++.++|+||||.+++.
T Consensus 520 ~v~~~~------el~~al~~a~~~~~p~lieV~vd~~ 550 (571)
T PRK07710 520 RIDDEL------EAKEQLQHAIELQEPVVIDCRVLQS 550 (571)
T ss_pred EECCHH------HHHHHHHHHHhCCCCEEEEEEecCc
Confidence 998765 4566777777788999999999764
No 72
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.84 E-value=4.8e-21 Score=200.77 Aligned_cols=153 Identities=23% Similarity=0.266 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++..+....++ +...|.|..+.|. .+.++ .+.+|+||+++|+|+|+++| .++
T Consensus 358 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la-----------~p~ 426 (578)
T PRK06546 358 PIHPEYVASILDELAADDAVFTVDTGMCNVWAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLA-----------DPG 426 (578)
T ss_pred CcCHHHHHHHHHHhccCCcEEEECCcHHHHHHHHhcCCCCCceEEccCCcccccchhHHHHHHHHh-----------CCC
Confidence 36788888888877664 4556777665442 12333 35679999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------ccCCcchhhccccCCccEEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHV 293 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q~~~~d~~~~A~a~Gi~~~~V 293 (361)
++|||++|||+|+|+ .+||.||+++++|+++||+||+ ++++.+.. ....+||+++|++||+++++|
T Consensus 427 ~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v 503 (578)
T PRK06546 427 RQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNS-TLGMVKLEMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRV 503 (578)
T ss_pred CcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECC-ccccHHHHHHhcCCCcccccCCCCCHHHHHHHCCCeeEEe
Confidence 999999999999998 8999999999999999999998 44443211 123579999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
+.. .++ ++|++++.+.++|+||||.+.+.
T Consensus 504 ~~~--~el----~~al~~a~~~~gp~lIev~~~~~ 532 (578)
T PRK06546 504 EDP--KDV----RGALREAFAHPGPALVDVVTDPN 532 (578)
T ss_pred CCH--HHH----HHHHHHHHhCCCCEEEEEEeCCC
Confidence 854 454 55666666788999999999765
No 73
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.84 E-value=6.5e-21 Score=198.41 Aligned_cols=154 Identities=24% Similarity=0.417 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.++....+. +...|.|++..|. .+.++ .+++|+||+++|+|+|+++| .++
T Consensus 351 ~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la-----------~p~ 419 (548)
T PRK08978 351 AIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVA-----------RPD 419 (548)
T ss_pred CcCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHh-----------CCC
Confidence 47888999998887764 4667777755442 23344 46779999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc----------c---CCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA----------T---SDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q----------~---~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ +++..+..| . ..+||.++|++||+++.
T Consensus 420 ~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~ 496 (548)
T PRK08978 420 DTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQ-RLGMVRQWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQ 496 (548)
T ss_pred CcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEE
Confidence 999999999999999 9999999999999999999997 444332111 1 34799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
+|+..+ + +++|++++.+.++|+||||.+.+..
T Consensus 497 ~v~~~~--e----l~~al~~a~~~~~p~lIeV~id~~~ 528 (548)
T PRK08978 497 TITRKD--Q----VEAALDTLLNSEGPYLLHVSIDELE 528 (548)
T ss_pred EECCHH--H----HHHHHHHHHhCCCCEEEEEEecCcc
Confidence 998765 4 5666677777889999999998754
No 74
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.84 E-value=7.4e-21 Score=198.66 Aligned_cols=153 Identities=20% Similarity=0.353 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.++....++ ++..|.|+...|. .+.++ .+++|+||+++|+|+|+++| .++
T Consensus 369 ~l~~~~v~~~l~~~l~~~~iv~~D~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~~~ 437 (564)
T PRK08155 369 PLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALA-----------NPE 437 (564)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEECCchHHHHHHHhccccCCCeEEeCCCcccccchhHHHHHHHHh-----------CCC
Confidence 46788899998887764 4567777644432 23344 46779999999999999999 689
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .++|.||+++++|+++||.||+ ++++.+..| ...+||+++|++||++++
T Consensus 438 ~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~-~~g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~ 514 (564)
T PRK08155 438 RKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNE-ALGLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGLETC 514 (564)
T ss_pred CcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-cccccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEE
Confidence 999999999999998 8999999999999999999998 333322111 134799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
+|+..+ + +..+++++++.++|+||||.+.+.
T Consensus 515 ~v~~~~--e----l~~al~~a~~~~~p~lIeV~~~~~ 545 (564)
T PRK08155 515 DLNNEA--D----PQAALQEAINRPGPALIHVRIDAE 545 (564)
T ss_pred EeCCHH--H----HHHHHHHHHhCCCCEEEEEEeCCC
Confidence 998765 4 455666667778999999999754
No 75
>PRK08611 pyruvate oxidase; Provisional
Probab=99.84 E-value=5.5e-21 Score=200.22 Aligned_cols=154 Identities=23% Similarity=0.288 Sum_probs=122.6
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.++|.+++.++...+++ +...|.|.+.+|. .+.++ ..++|+||+++|+|+|+++| .++
T Consensus 358 ~i~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~ 426 (576)
T PRK08611 358 PIKPERVMAAIQKIADDDAVLSVDVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIA-----------FPD 426 (576)
T ss_pred CcCHHHHHHHHhhhcCCCeEEEEcChHHHHHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHh-----------CCC
Confidence 36888999999888775 4556777765442 12333 35679999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------ccCCcchhhccccCCccEEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHV 293 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q~~~~d~~~~A~a~Gi~~~~V 293 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+.. ....+||+++|++||+++++|
T Consensus 427 ~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 503 (576)
T PRK08611 427 RQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQ-QLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRV 503 (576)
T ss_pred CcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCC-cchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe
Confidence 999999999999999 9999999999999999999997 44432211 113579999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
+..+ ++++|++++++.++|+||||.+++..
T Consensus 504 ~~~~------eL~~al~~a~~~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 504 EKAE------ELDPAFEEALAQDKPVIIDVYVDPNA 533 (576)
T ss_pred CCHH------HHHHHHHHHHhCCCCEEEEEEeCCcc
Confidence 8765 45667777777899999999997643
No 76
>PRK08322 acetolactate synthase; Reviewed
Probab=99.84 E-value=6.9e-21 Score=198.04 Aligned_cols=151 Identities=22% Similarity=0.361 Sum_probs=120.6
Q ss_pred CCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048 157 VPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (361)
Q Consensus 157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~ 225 (361)
+++..++.++....++ ++..|.|++.+|. .+.++ ..++|+||+++|+|+|+++| .|++
T Consensus 357 l~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~~ 425 (547)
T PRK08322 357 MKPQRIVADLRKVMPDDDIVILDNGAYKIWFARNYRAYEPNTCLLDNALATMGAGLPSAIAAKLV-----------HPDR 425 (547)
T ss_pred cCHHHHHHHHHHHCCCCeEEEECCcHHHHHHHHhcccCCCCCEEcCCCcccccchhHHHHHHHHh-----------CCCC
Confidence 6788899998887764 4667777754542 13333 46789999999999999999 7899
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEEEe
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFHVD 294 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~Vd 294 (361)
+||+++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+..| ...+||+++|++||+++++|+
T Consensus 426 ~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~-~~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~ 502 (547)
T PRK08322 426 KVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDN-AYGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE 502 (547)
T ss_pred cEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCC-CcchHHHHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeC
Confidence 99999999999999 8999999999999999999998 444432211 135799999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 295 GMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
..+ + ++++++++++.++|+||||.+++
T Consensus 503 ~~~--e----L~~al~~a~~~~~p~lIev~v~~ 529 (547)
T PRK08322 503 SAD--D----LLPTLEEALAQPGVHVIDCPVDY 529 (547)
T ss_pred CHH--H----HHHHHHHHHhCCCCEEEEEEecC
Confidence 654 4 45666666677899999999865
No 77
>PRK12754 transketolase; Reviewed
Probab=99.84 E-value=3.2e-20 Score=196.23 Aligned_cols=160 Identities=23% Similarity=0.240 Sum_probs=129.0
Q ss_pred cccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 264 (361)
Q Consensus 189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y 264 (361)
++-..+|++|.+++.|+|+|+|.|+++..+...+ .+..|+|++|||++++|.++|++++|+.++|| +|+||+||+|
T Consensus 108 gve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~ 187 (663)
T PRK12754 108 GVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 187 (663)
T ss_pred CccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCC
Confidence 4456789999999999999999998864433222 36889999999999999999999999999999 8899999999
Q ss_pred ccccccccccCCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC-C-CC---C
Q 018048 265 AIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-D-PD---E 338 (361)
Q Consensus 265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~-D-p~---~ 338 (361)
+++.+...+. ..++.+++++|||++++ |||+|++++.+++++|.+ ..++|++|+++|++..|.+.. + +. .
T Consensus 188 ~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~ 263 (663)
T PRK12754 188 SIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGA 263 (663)
T ss_pred ccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCccccCCCccccCC
Confidence 9998877665 57899999999999999 899999887665554432 257899999999999998743 2 21 1
Q ss_pred CCCHHHHHhHHHhh
Q 018048 339 LRDPGEHLVLVLFI 352 (361)
Q Consensus 339 yR~~~e~~~~~~~~ 352 (361)
--+++|++....+.
T Consensus 264 ~l~~~~~~~~~~~l 277 (663)
T PRK12754 264 PLGDAEIALTREQL 277 (663)
T ss_pred CCCHHHHHHHHHhc
Confidence 23566766665544
No 78
>PRK08266 hypothetical protein; Provisional
Probab=99.83 E-value=1.1e-20 Score=196.37 Aligned_cols=156 Identities=23% Similarity=0.289 Sum_probs=118.7
Q ss_pred CCHH-HHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 157 VPAR-AVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 157 ~~~~-~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
++|+ .++.+|....++ +...++|+..+|. .+.++ .+.+|+||+++|+|+|++++ .++
T Consensus 352 ~~~~~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la-----------~p~ 420 (542)
T PRK08266 352 VQPQASYLRAIREALPDDGIFVDELSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVA-----------NPD 420 (542)
T ss_pred CCHHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHh-----------CCC
Confidence 3454 367777776664 4556666554332 12333 35679999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc----------ccCCcchhhccccCCccEEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------ATSDPQIYKKGPAFGMPGFHV 293 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~----------q~~~~d~~~~A~a~Gi~~~~V 293 (361)
++|||++|||+|+|+ .++|.||++++||+++||.||+ |++....+. ....+||.++|++||+++++|
T Consensus 421 ~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v 498 (542)
T PRK08266 421 RPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRV 498 (542)
T ss_pred CcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe
Confidence 999999999999999 8999999999999999999996 543211110 013479999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCC
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 331 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gH 331 (361)
+..+ ++++|++++++.++|+||||.|+|...+
T Consensus 499 ~~~~------el~~al~~a~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 499 DSPE------ELRAALEAALAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred CCHH------HHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence 8765 4566777777788999999999887543
No 79
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.83 E-value=5.5e-21 Score=199.83 Aligned_cols=152 Identities=26% Similarity=0.417 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++.+++.+|....++ +...|.|++..|. .+.++ .+++|+||+++|+|+|+++| .|+
T Consensus 368 ~l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~p~ 436 (566)
T PRK07282 368 VVQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIA-----------NPD 436 (566)
T ss_pred CcCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHhheehee-----------cCC
Confidence 47899999999887753 4667777755442 23333 46789999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------c-CCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------T-SDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~-~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ +++..+..| . ..+||+++|++||+++.
T Consensus 437 ~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 513 (566)
T PRK07282 437 KEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNH-SLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHY 513 (566)
T ss_pred CcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCC-CchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEE
Confidence 999999999999999 8999999999999999999998 555433211 1 35799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
+|+..+ + +.+|++. ...++|+||||.+.+.
T Consensus 514 ~v~~~~--e----l~~al~~-~~~~~p~lIeV~v~~~ 543 (566)
T PRK07282 514 KFDNPE--T----LAQDLEV-ITEDVPMLIEVDISRK 543 (566)
T ss_pred EECCHH--H----HHHHHHH-hcCCCCEEEEEEeCCc
Confidence 998765 4 4556653 3458999999999764
No 80
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.83 E-value=1.2e-20 Score=197.39 Aligned_cols=154 Identities=24% Similarity=0.394 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.++....++ ++..|.|.+..|. .+..+ .+++|+||+++|+|+|+++| .++
T Consensus 371 ~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la-----------~p~ 439 (574)
T PRK06882 371 VIKPQQVVEAIYRLTNGDAYVASDVGQHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFA-----------HPE 439 (574)
T ss_pred CcCHHHHHHHHHhhcCCCeEEEecCchhHHHHHHhccccCCCcEEeCCCcccccchhHHHHHHHhh-----------cCC
Confidence 36788899998887653 4556777654442 23344 46789999999999999999 688
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ ++++.++.| ...+||.++|++||++++
T Consensus 440 ~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~ 516 (574)
T PRK06882 440 ATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNR-FLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGI 516 (574)
T ss_pred CcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECc-hhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEE
Confidence 999999999999998 8999999999999999999998 344322110 124789999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecCC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFR 329 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~~ 329 (361)
+|+..+ + ++.|++++++. ++|+||||.+.+..
T Consensus 517 ~v~~~~--e----L~~al~~a~~~~~~p~liev~i~~~~ 549 (574)
T PRK06882 517 QIDTPD--E----LEEKLTQAFSIKDKLVFVDVNVDETE 549 (574)
T ss_pred EeCCHH--H----HHHHHHHHHhcCCCcEEEEEEecCcc
Confidence 998766 4 55666666653 78999999998644
No 81
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.83 E-value=1.6e-20 Score=175.97 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=118.5
Q ss_pred hhcCCCCHHHHHHHHhcCcCC--CcccCCCccccc----c-------ccccccCCccccccccHHHHHHHHHHHHHHhhh
Q 018048 152 ALSKGVPARAVMSELFGKATG--CCRGQGGSMHMF----S-------KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVL 218 (361)
Q Consensus 152 ~l~~g~~~~~~~~el~~~~~g--~~~gd~G~~h~~----~-------~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~ 218 (361)
.+..|..-..++.+|...+++ +..+|.|...+| . ....+.+..++||+++|+|+|++++
T Consensus 6 ~~C~gC~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~gsmG~GlpaAiGa~~a-------- 77 (235)
T cd03376 6 RACAGCGAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFENAAAVASGIEAALKALGR-------- 77 (235)
T ss_pred ccCCCCccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhcCHHHHHHHHHHHHHHhcc--------
Confidence 344566666777777766654 355666655332 1 1122334558999999999999888
Q ss_pred hhcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCCeEEEEEcCC-ccccc-cccc--------------------ccC
Q 018048 219 KEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGM-SHLR--------------------ATS 275 (361)
Q Consensus 219 ~~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~-~~~~--------------------q~~ 275 (361)
.|+++|||++|||++ +|+ .+||.||+++++||++||.||+ |++.. .... ...
T Consensus 78 ---~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (235)
T cd03376 78 ---GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQP 152 (235)
T ss_pred ---CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccc
Confidence 689999999999995 798 9999999999999999999998 55211 1111 113
Q ss_pred CcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048 276 DPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (361)
Q Consensus 276 ~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (361)
.+|+.++|++||++++. ++-.++.++ +++++++++.++|+|||+.+.=...|...
T Consensus 153 ~~d~~~iA~a~G~~~~~~~~v~~~~el----~~al~~a~~~~gP~lIev~~~C~~~~~~~ 208 (235)
T cd03376 153 KKDLPLIMAAHNIPYVATASVAYPEDL----YKKVKKALSIEGPAYIHILSPCPTGWRFD 208 (235)
T ss_pred cCCHHHHHHHcCCcEEEEEcCCCHHHH----HHHHHHHHhCCCCEEEEEECCCCCCCCCC
Confidence 47999999999999974 444566665 44555556678999999998655544433
No 82
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.83 E-value=1.7e-20 Score=196.59 Aligned_cols=153 Identities=24% Similarity=0.311 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccc-cc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEH-NL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC 223 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~-~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~ 223 (361)
.+++..++.++...+++ +...|.|...+|. ++. ++ ..++++||+++|+|+|+++| .+
T Consensus 386 ~i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la-----------~~ 454 (578)
T PRK06112 386 PIRPERIMAELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVA-----------RP 454 (578)
T ss_pred CcCHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhh-----------CC
Confidence 47889999999988774 4556777654442 122 34 35679999999999999999 78
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------cCCcchhhccccCCccEE
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~~~~d~~~~A~a~Gi~~~ 291 (361)
+++|||++|||+|+|+ .++|+||+++++|+++||.||+ .+++....+ ...+||.++|++||++++
T Consensus 455 ~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~~vv~NN~-~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~ 531 (578)
T PRK06112 455 GAPVICLVGDGGFAHV--WAELETARRMGVPVTIVVLNNG-ILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGV 531 (578)
T ss_pred CCcEEEEEcchHHHhH--HHHHHHHHHhCCCeEEEEEeCC-ccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEE
Confidence 9999999999999988 9999999999999999999998 333322111 125789999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
+|+..+ + +++|++++++.+||+||||++.+.
T Consensus 532 ~v~~~~--e----l~~al~~a~~~~gp~lIev~~~~~ 562 (578)
T PRK06112 532 RVEDPA--E----LAQALAAAMAAPGPTLIEVITDPS 562 (578)
T ss_pred EeCCHH--H----HHHHHHHHHhCCCCEEEEEEcCcc
Confidence 998655 4 566777777788999999999653
No 83
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.83 E-value=8.2e-20 Score=193.60 Aligned_cols=159 Identities=24% Similarity=0.287 Sum_probs=127.7
Q ss_pred cccCCccccccccHHHHHHHHHHHHHHhhhhh---cCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 264 (361)
Q Consensus 189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~---~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y 264 (361)
++...+|++|.++|.|+|+|+|.|+.+..... ...+.+|+|++|||++++|.+||++++|+.++|| +++||+||+|
T Consensus 104 gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~ 183 (653)
T TIGR00232 104 GVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRI 183 (653)
T ss_pred CeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCe
Confidence 45567899999999999999999987543321 1247889999999999999999999999999999 8889999999
Q ss_pred ccccccccccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEecCCCCCCCC--CC---
Q 018048 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGE-GPTLVECETYRFRGHSLAD--PD--- 337 (361)
Q Consensus 265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~R~~gHs~~D--p~--- 337 (361)
+++.+...+. ..++.+++++|||++++| ||+|+.++.+ |++++++.+ +|++|+++|+|..|.+... +.
T Consensus 184 ~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~----A~~~a~~~~~~P~~I~~~T~~g~G~~~~e~~~~~H~ 258 (653)
T TIGR00232 184 SIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDA----AIEEAKASKDKPTLIEVTTTIGFGSPNKAGTHGVHG 258 (653)
T ss_pred eecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHH----HHHHHHhCCCCCEEEEEEeeecccCcccCCCCcccC
Confidence 9998877665 578999999999999999 9999988765 455556654 8999999999999986432 11
Q ss_pred CCCCHHHHHhHHHhh
Q 018048 338 ELRDPGEHLVLVLFI 352 (361)
Q Consensus 338 ~yR~~~e~~~~~~~~ 352 (361)
.--+++|.+......
T Consensus 259 ~~~~~~~~~~~~~~l 273 (653)
T TIGR00232 259 APLGDEDVKLTKKNL 273 (653)
T ss_pred CCCCHHHHHHHHHHh
Confidence 112556665555443
No 84
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.83 E-value=5.1e-20 Score=170.66 Aligned_cols=167 Identities=15% Similarity=0.175 Sum_probs=135.2
Q ss_pred CCchhHHHHHHHhcCC-CcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCcccccccc
Q 018048 123 NGQEAVSTGFIKLLKK-EDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI 201 (361)
Q Consensus 123 ~GqEa~~vg~~~~l~~-~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~l 201 (361)
.||++.++.++..|.. +|.+++.|+.+.. | +.++++++. . + .| ...|......++....|++|+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~----g--l~~lf~qfs-~-~---gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEE----G--MRKLFKQFS-F-P---GG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHH----H--HHHHHHhcC-C-C---CC--CCCCCcccCCCeeecccchhhHH
Confidence 5999998888888886 6999999986541 1 255677652 1 1 11 33466544456667789999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcch---HHHHHHhhhCCCC-eEEEEEcCCcccccccccc-cCC
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKLP-IVFVVENNLWAIGMSHLRA-TSD 276 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~---~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~q-~~~ 276 (361)
+.|+|+++. +++.+|+|++|||++++|.+ +++..++..+++. |+.|+.||+|.++.++... ...
T Consensus 69 s~A~G~a~d-----------~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~ 137 (227)
T cd02011 69 SHAYGAVFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISH 137 (227)
T ss_pred HHHHHhhhc-----------CCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCc
Confidence 999999875 68899999999999999986 7777777778887 8888899999999988755 456
Q ss_pred cchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHH
Q 018048 277 PQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERAR 313 (361)
Q Consensus 277 ~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar 313 (361)
.++.+++++||++.+.|||+|++++++++++|+++++
T Consensus 138 e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 138 EELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred hhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999998765
No 85
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.83 E-value=1.4e-20 Score=198.43 Aligned_cols=153 Identities=24% Similarity=0.324 Sum_probs=120.0
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.++....+. +...|.|.+..|. .+.++ .+++|+||+++|+|+|+++| .++
T Consensus 397 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la-----------~p~ 465 (612)
T PRK07789 397 SLAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVG-----------RPD 465 (612)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhcc-----------CCC
Confidence 47899999999887753 4567777654332 23344 46779999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc--------------c---CCcchhhccccCC
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA--------------T---SDPQIYKKGPAFG 287 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q--------------~---~~~d~~~~A~a~G 287 (361)
++|||++|||+|+|+ .+||.||+++++|+++||.||+ +++..+..| . ..+||+++|++||
T Consensus 466 ~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G 542 (612)
T PRK07789 466 KEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNG-NLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYG 542 (612)
T ss_pred CcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECC-chHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCC
Confidence 999999999999999 9999999999999999999998 444332110 0 1379999999999
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecC
Q 018048 288 MPGFHVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRF 328 (361)
Q Consensus 288 i~~~~Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~ 328 (361)
+++++|+..+ + +++|++++++ .++|+||||.+.+.
T Consensus 543 ~~~~~V~~~~--e----L~~al~~a~~~~~~p~lIev~i~~~ 578 (612)
T PRK07789 543 CVGLRCEREE--D----VDAVIEKARAINDRPVVIDFVVGKD 578 (612)
T ss_pred CeEEEECCHH--H----HHHHHHHHHhcCCCcEEEEEEECCc
Confidence 9999998765 4 4556666655 37999999999763
No 86
>PLN02573 pyruvate decarboxylase
Probab=99.82 E-value=1.8e-20 Score=196.41 Aligned_cols=151 Identities=14% Similarity=0.079 Sum_probs=118.1
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-----c--cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-----K--EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-----~--~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.+|....+. ++..|.|+. ++. . +..+ .+++|+||+++|+|||+++| .++
T Consensus 379 ~i~~~~~~~~l~~~l~~d~iiv~D~G~~-~~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA-----------~p~ 446 (578)
T PLN02573 379 PLRVNVLFKHIQKMLSGDTAVIAETGDS-WFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQA-----------APD 446 (578)
T ss_pred ccCHHHHHHHHHHhcCCCCEEEEecccc-hhhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHh-----------CCC
Confidence 47899999998887663 566777763 321 1 1222 46689999999999999999 789
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------cCCcchhhccccCC-----ccEEEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------TSDPQIYKKGPAFG-----MPGFHV 293 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------~~~~d~~~~A~a~G-----i~~~~V 293 (361)
++||+++|||+|+|+ .+||.||+++++|+++||.||+ ++++.++.+ ...+||.++|++|| +++.+|
T Consensus 447 r~vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~vV~NN~-~yg~~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V 523 (578)
T PLN02573 447 KRVIACIGDGSFQVT--AQDVSTMIRCGQKSIIFLINNG-GYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKV 523 (578)
T ss_pred CceEEEEeccHHHhH--HHHHHHHHHcCCCCEEEEEeCC-ceeEEEeecccCccccCCCCHHHHHHHhcCcCCceeEEEe
Confidence 999999999999999 8999999999999999999998 444443211 24579999999985 899999
Q ss_pred eCCCHHHHHHHHHHHHHHHH--cCCCCEEEEEEEec
Q 018048 294 DGMDVLKVREVAKEAIERAR--RGEGPTLVECETYR 327 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar--~~~gP~lIev~t~R 327 (361)
+..+ + +++++++++ +.++|+||||.+.+
T Consensus 524 ~~~~--e----L~~al~~a~~~~~~~p~lieV~v~~ 553 (578)
T PLN02573 524 RTEE--E----LIEAIATATGEKKDCLCFIEVIVHK 553 (578)
T ss_pred cCHH--H----HHHHHHHHHhhCCCCcEEEEEEcCc
Confidence 8765 5 455555555 35889999999853
No 87
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.82 E-value=4e-20 Score=191.83 Aligned_cols=152 Identities=22% Similarity=0.266 Sum_probs=119.6
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc-cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~-~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~ 225 (361)
.+++..++.+|....++ +...|.|+...|. .+.++ ....|+||+++|+|+|+++| .+++
T Consensus 358 ~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~p~~ 426 (530)
T PRK07092 358 PLSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEHLPMRRQGSFYTMASGGLGYGLPAAVGVALA-----------QPGR 426 (530)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHhcCcCCCCceEccCCCcccchHHHHHHHHHh-----------CCCC
Confidence 37888999999888764 4556777654432 12333 34469999999999999999 6889
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccc----------ccccCCcchhhccccCCccEEEEe
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH----------LRATSDPQIYKKGPAFGMPGFHVD 294 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~----------~~q~~~~d~~~~A~a~Gi~~~~Vd 294 (361)
+|||++|||+|+|+ .++|+||+++++|+++||.||+ |++.... ......+||.++|++||+++++|+
T Consensus 427 ~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~ 504 (530)
T PRK07092 427 RVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS 504 (530)
T ss_pred eEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC
Confidence 99999999999999 8999999999999999999998 6542110 011245789999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 295 GMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
+.+ ++++|++++++.++|+|||+.++
T Consensus 505 ~~~------~l~~al~~a~~~~~p~liev~~d 530 (530)
T PRK07092 505 DAA------ELADALARALAADGPVLVEVEVA 530 (530)
T ss_pred CHH------HHHHHHHHHHhCCCCEEEEEEcC
Confidence 654 45677777778899999999873
No 88
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.82 E-value=2.6e-20 Score=194.37 Aligned_cols=153 Identities=24% Similarity=0.267 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc-cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~-~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~ 225 (361)
.+++..++.+|....++ ++..|.|+...|. .+..+ ....|+||+++|+|+|++++ .+++
T Consensus 366 ~~~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~ 434 (557)
T PRK08199 366 AVQLGEVMAWLRERLPADAIITNGAGNYATWLHRFFRFRRYRTQLAPTSGSMGYGLPAAIAAKLL-----------FPER 434 (557)
T ss_pred CcCHHHHHHHHHHhCCCCeEEEECChHHHHHHHHhcCcCCCCeEECCCCccccchHHHHHHHHHh-----------CCCC
Confidence 47888999999887764 4556777654442 12222 35579999999999999999 7899
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc------------ccCCcchhhccccCCccEEEE
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFHV 293 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~------------q~~~~d~~~~A~a~Gi~~~~V 293 (361)
+|||++|||+|+|+ .+||.||+++++|+++||.||+ ++++.... ....+||.++|++||+++.+|
T Consensus 435 ~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v 511 (557)
T PRK08199 435 TVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNG-MYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGHGETV 511 (557)
T ss_pred cEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCC-cchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe
Confidence 99999999999998 8999999999999999999998 33332211 113479999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
++.+ +++++++++++.++|+||||.+.+.
T Consensus 512 ~~~~------el~~al~~a~~~~gp~li~v~~~~~ 540 (557)
T PRK08199 512 ERTE------DFAPAFERALASGKPALIEIRIDPE 540 (557)
T ss_pred CCHH------HHHHHHHHHHhCCCCEEEEEEeCHH
Confidence 9765 4566777777788999999999764
No 89
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.82 E-value=6.4e-20 Score=175.58 Aligned_cols=178 Identities=16% Similarity=0.152 Sum_probs=120.3
Q ss_pred CCCHHHHHHHHhcC--cC-C-CcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE
Q 018048 156 GVPARAVMSELFGK--AT-G-CCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 231 (361)
Q Consensus 156 g~~~~~~~~el~~~--~~-g-~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~ 231 (361)
++.+..++..+... .+ + ++.+|.|.+..+..-.+.....++||+++|+|+|+++| .|+++||++.
T Consensus 25 ~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~~~~~~~~~~~~G~alPaAiGaklA-----------~Pdr~VV~i~ 93 (277)
T PRK09628 25 GVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYVNCNTVHTTHGRAVAYATGIKLA-----------NPDKHVIVVS 93 (277)
T ss_pred chHHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhccCCCCceeeccccHHHHHHHHHHH-----------CCCCeEEEEE
Confidence 34566666666544 12 2 34556665432221111223346999999999999999 7999999999
Q ss_pred CCCccc-CcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc--------c--------cCCcchhhccccCCccEE--
Q 018048 232 GDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR--------A--------TSDPQIYKKGPAFGMPGF-- 291 (361)
Q Consensus 232 GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~--------q--------~~~~d~~~~A~a~Gi~~~-- 291 (361)
|||+|+ +| .+++.+|+++++||++||.||+ |++...++. + ..+.|+.++|++||++++
T Consensus 94 GDG~f~~~g--~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~ 171 (277)
T PRK09628 94 GDGDGLAIG--GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVAR 171 (277)
T ss_pred CchHHHHhh--HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEE
Confidence 999997 46 7889999999999999999998 554210000 0 123478999999999986
Q ss_pred -EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHHHhhhc
Q 018048 292 -HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVLFIFC 354 (361)
Q Consensus 292 -~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~~~~~ 354 (361)
+|+ ++.++ +.+++++++.+||+||||.+.-... ..-...++++.+.-.|......
T Consensus 172 ~~v~--~~~el----~~al~~Al~~~Gp~lIeV~~~c~~~--~~~~~~~~~~~~~~~~~~~~~~ 227 (277)
T PRK09628 172 ESVI--DPQKL----EKLLVKGFSHKGFSFFDVFSNCHIN--LGRKNKMGEAVQMLKWIESRTV 227 (277)
T ss_pred EccC--CHHHH----HHHHHHHHhCCCCEEEEEcCCCCCC--CCcccccccHHHHHHHHHHhhc
Confidence 565 44454 5566666678999999997744311 1112346677788888877643
No 90
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.82 E-value=2.6e-20 Score=194.25 Aligned_cols=153 Identities=23% Similarity=0.427 Sum_probs=120.6
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.++....++ ++..|.|.+..|. .+..+ .+++|+||+++|+|+|+++| .++
T Consensus 362 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la-----------~~~ 430 (558)
T TIGR00118 362 GIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVA-----------KPE 430 (558)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhh-----------CCC
Confidence 47888999999988875 4556777654332 23344 46679999999999999999 688
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc-------------cccCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------------RATSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~-------------~q~~~~d~~~~A~a~Gi~~~ 291 (361)
++||+++|||+|+|+ .++|.||+++++|+++||.||+ +++.... .....+||.++|++||++++
T Consensus 431 ~~vv~~~GDG~f~~~--~~eL~ta~~~~l~~~~vv~NN~-~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~ 507 (558)
T TIGR00118 431 STVICITGDGSFQMN--LQELSTAVQYDIPVKILILNNR-YLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGI 507 (558)
T ss_pred CcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEE
Confidence 999999999999998 8999999999999999999998 3433221 11124799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
+|+..+ + +++|++++.+.++|+||||.+.+.
T Consensus 508 ~v~~~~--~----l~~al~~a~~~~~p~liev~~~~~ 538 (558)
T TIGR00118 508 RIEKPE--E----LDEKLKEALSSNEPVLLDVVVDKP 538 (558)
T ss_pred EECCHH--H----HHHHHHHHHhCCCCEEEEEEeCCc
Confidence 998765 4 455666666678999999999753
No 91
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.82 E-value=2.9e-20 Score=195.09 Aligned_cols=152 Identities=24% Similarity=0.348 Sum_probs=118.8
Q ss_pred CCCHHHHHHHHhcCcCC-------CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhh
Q 018048 156 GVPARAVMSELFGKATG-------CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLK 219 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g-------~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~ 219 (361)
.+++..++.++....++ ++..|.|++..|. .+.++ .+++|+||+++|+|+|+++|
T Consensus 364 ~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la--------- 434 (586)
T PRK06276 364 PIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVA--------- 434 (586)
T ss_pred CcCHHHHHHHHHHhccccCCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhh---------
Confidence 36788888888877654 4556777654441 23344 35679999999999999999
Q ss_pred hcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------c-c-CCcchhhccccC
Q 018048 220 EADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A-T-SDPQIYKKGPAF 286 (361)
Q Consensus 220 ~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q-~-~~~d~~~~A~a~ 286 (361)
.++++||+++|||+|+|+ .++|.||+++++|+++||.||+ ++++.... . . ..+||.++|++|
T Consensus 435 --~p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 509 (586)
T PRK06276 435 --KPDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNR-TLGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESY 509 (586)
T ss_pred --cCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC
Confidence 688999999999999999 8999999999999999999998 44332110 0 1 347999999999
Q ss_pred CccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 287 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 287 Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
|+++++|+..+ + ++.|++++.+.++|+||||.+.+
T Consensus 510 G~~~~~v~~~~--e----l~~al~~a~~~~~p~lIeV~i~~ 544 (586)
T PRK06276 510 GVKADRVEKPD--E----IKEALKEAIKSGEPYLLDIIIDP 544 (586)
T ss_pred CCeEEEECCHH--H----HHHHHHHHHhCCCCEEEEEEecc
Confidence 99999998665 4 45566666677899999999964
No 92
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.82 E-value=5.1e-20 Score=192.01 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHhcCcC---C-CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcC
Q 018048 156 GVPARAVMSELFGKAT---G-CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEAD 222 (361)
Q Consensus 156 g~~~~~~~~el~~~~~---g-~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~ 222 (361)
.+++..++.++....+ + ++..++|+...|. .+.++ .+++|+||+++|+|+|+++|
T Consensus 365 ~l~~~~~~~~l~~~l~~~~~~ivv~d~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala------------ 432 (554)
T TIGR03254 365 PMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE------------ 432 (554)
T ss_pred CcCHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc------------
Confidence 5788889888887764 2 3455556443321 22333 45679999999999999998
Q ss_pred CCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc--------cc-cCCcchhhccccCCccEEE
Q 018048 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL--------RA-TSDPQIYKKGPAFGMPGFH 292 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~--------~q-~~~~d~~~~A~a~Gi~~~~ 292 (361)
++++||+++|||+|+|+ .+||.||+++++|+++||.||+ |....... .. ...+||.++|++||+++++
T Consensus 433 ~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~ 510 (554)
T TIGR03254 433 TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGGVGYN 510 (554)
T ss_pred CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCCeEEE
Confidence 47899999999999999 8999999999999999999997 31111000 01 1457999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
|+..+ + ++.|++++++.++|+||||.+.+.
T Consensus 511 v~~~~--e----l~~al~~a~~~~~p~lIev~id~~ 540 (554)
T TIGR03254 511 VTTPD--E----LKAALNEALASGKPTLINAVIDPS 540 (554)
T ss_pred eCCHH--H----HHHHHHHHHhCCCCEEEEEEECCC
Confidence 98655 5 455666666778999999999654
No 93
>PRK12753 transketolase; Reviewed
Probab=99.81 E-value=1.2e-18 Score=184.75 Aligned_cols=142 Identities=23% Similarity=0.258 Sum_probs=120.1
Q ss_pred cccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 264 (361)
Q Consensus 189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y 264 (361)
++...+|++|.+++.|+|+|+|.|+++....... .+.+|+|++|||++++|.++|++++|+.++|| +|+||+||+|
T Consensus 108 gve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~ 187 (663)
T PRK12753 108 GVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGI 187 (663)
T ss_pred CcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 4456789999999999999999998753322111 26799999999999999999999999999998 8999999999
Q ss_pred ccccccccccCCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048 265 AIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (361)
Q Consensus 265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (361)
+++.+..... ..++.+++++|||+++. |||+|+.++++++++|.+ ..++|++|+++|++..|++..
T Consensus 188 ~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~ 254 (663)
T PRK12753 188 SIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNK 254 (663)
T ss_pred cCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCcc
Confidence 9988776544 56899999999999995 999999998887776643 357899999999999999853
No 94
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.81 E-value=4.5e-19 Score=185.97 Aligned_cols=135 Identities=23% Similarity=0.239 Sum_probs=112.6
Q ss_pred ccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccc
Q 018048 190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 269 (361)
Q Consensus 190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~ 269 (361)
+...+|++|+++|+|+|+|+|.++++ +++++|+|++|||++++|.++|+|++|+++++|+++|+.||+|+++.+
T Consensus 112 ~~~~~G~lG~gl~~AvG~A~a~~~~~------~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~ 185 (580)
T PRK05444 112 DTFGAGHSSTSISAALGMAKARDLKG------GEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPN 185 (580)
T ss_pred eeECCChHHHHHHHHHHHHHHHHhhC------CCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCc
Confidence 34567999999999999999987762 367899999999999999999999999999999999999999987765
Q ss_pred cccc---cCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048 270 HLRA---TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (361)
Q Consensus 270 ~~~q---~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (361)
.... ....++.+++++||++++ .|||+|+.++++++ +++++.++|++|++.|.+..|.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al----~~a~~~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 186 VGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETL----KNAKDLKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred chhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHH----HHHHhCCCCEEEEEEecCCcCCChh
Confidence 5332 123456788999999999 59999998876544 4556678999999999999987643
No 95
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.81 E-value=1.4e-19 Score=189.40 Aligned_cols=158 Identities=21% Similarity=0.196 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcc-cccc--ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEE
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSM-HMFS--KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 228 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~-h~~~--~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv 228 (361)
.+++.+++.+|...+++ ++..+.+.. +++. .+.++ .+++|+||+++|+|+|+++| .|+++||
T Consensus 384 ~i~~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la-----------~p~~~vv 452 (569)
T PRK08327 384 PITPAYLSYCLGEVADEYDAIVTEYPFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLA-----------TPDRLVI 452 (569)
T ss_pred CcCHHHHHHHHHHhcCccceEEeccHHHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhc-----------CCCCeEE
Confidence 47899999999888774 333333321 2222 23334 45689999999999999999 7899999
Q ss_pred EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccc-----------------cccc-CCcchhhccccCCcc
Q 018048 229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH-----------------LRAT-SDPQIYKKGPAFGMP 289 (361)
Q Consensus 229 ~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~-----------------~~q~-~~~d~~~~A~a~Gi~ 289 (361)
|++|||+|+|+...++|+||+++++|+++||.||+ |++.... ..+. ..+||.++|++||++
T Consensus 453 ~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~ 532 (569)
T PRK08327 453 ATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGY 532 (569)
T ss_pred EEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCC
Confidence 99999999998434569999999999999999996 5542100 0011 457999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 290 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 290 ~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
+.+|+ ++.++..++++|++.+++++||+||||.+.
T Consensus 533 ~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 533 GERVE--DPEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred ceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 99998 556888888888877776789999999874
No 96
>PRK07064 hypothetical protein; Provisional
Probab=99.81 E-value=8e-20 Score=189.97 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=112.8
Q ss_pred HHHHHHHhcCcCC--CcccCCCcc-cccc-------cccc-ccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEE
Q 018048 160 RAVMSELFGKATG--CCRGQGGSM-HMFS-------KEHN-LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL 228 (361)
Q Consensus 160 ~~~~~el~~~~~g--~~~gd~G~~-h~~~-------~~~~-~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv 228 (361)
..++.++....++ ++..|.|.. ..|. .+.. +.+..|+||+++|+|+|+++| .++++||
T Consensus 359 ~~~~~~l~~~l~~~~ii~~d~~~~~~~~~~~~~~~~~p~~~~~~~~g~mG~~lpaAiGa~lA-----------~p~~~vv 427 (544)
T PRK07064 359 AKLVDALRAALPRDGNWVRDVTISNSTWGNRLLPIFEPRANVHALGGGIGQGLAMAIGAALA-----------GPGRKTV 427 (544)
T ss_pred HHHHHHHHHhCCCCCEEEeCCccchHHHHHHhcCccCCCceeccCCCccccccchhhhhhhh-----------CcCCcEE
Confidence 3578888877664 445565532 2221 1222 334448999999999999999 7899999
Q ss_pred EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc------------ccCCcchhhccccCCccEEEEeCC
Q 018048 229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFHVDGM 296 (361)
Q Consensus 229 ~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~------------q~~~~d~~~~A~a~Gi~~~~Vdg~ 296 (361)
+++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+.. ....+||.++|++||+++.+|+..
T Consensus 428 ~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~ 504 (544)
T PRK07064 428 GLVGDGGLMLN--LGELATAVQENANMVIVLMNDG-GYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVTSA 504 (544)
T ss_pred EEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCC-hhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCCH
Confidence 99999999998 8999999999999999999998 44433211 123579999999999999999876
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 297 DVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 297 D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
+ + ++.+++++++.++|+||||.++
T Consensus 505 ~--e----L~~al~~a~~~~~p~lIeV~~~ 528 (544)
T PRK07064 505 D--D----FEAVLREALAKEGPVLVEVDML 528 (544)
T ss_pred H--H----HHHHHHHHHcCCCCEEEEEEcc
Confidence 5 4 5566666667789999999986
No 97
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.80 E-value=6.1e-20 Score=190.83 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHhcCcCC----CcccCCCccccccc---cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048 156 GVPARAVMSELFGKATG----CCRGQGGSMHMFSK---EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV 226 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g----~~~gd~G~~h~~~~---~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~ 226 (361)
.++|.+++.++...++. +...|.|..+++.. +.++ ++.+|+||+++|+|+|+++| .+ ++
T Consensus 355 ~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~~-~r 422 (535)
T TIGR03394 355 PIAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMDMDDAGLMAPGYYAGMGFGVPAGIGAQCT-----------SG-KR 422 (535)
T ss_pred CcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHHHhcCCCcEECcCccchhhhHHHHHHHHHhC-----------CC-CC
Confidence 47888899988887653 35678787544431 2333 45789999999999999999 34 44
Q ss_pred EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------cCCcchhhccccCCccEEEEeCCCHH
Q 018048 227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------TSDPQIYKKGPAFGMPGFHVDGMDVL 299 (361)
Q Consensus 227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------~~~~d~~~~A~a~Gi~~~~Vdg~D~~ 299 (361)
+|+++|||+|+|+ .+||.||+++++|+++||.||+ ++++.+..| ...+||+++|++||+++.+|+..+
T Consensus 423 ~v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~-- 497 (535)
T TIGR03394 423 ILTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNA-SWEMLRVFQPESAFNDLDDWRFADMAAGMGGDGVRVRTRA-- 497 (535)
T ss_pred eEEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECC-ccceeehhccCCCcccCCCCCHHHHHHHcCCCceEeCCHH--
Confidence 5889999999999 9999999999999999999998 455443222 235799999999999999998765
Q ss_pred HHHHHHHHHHHHHHcC-CCCEEEEEEEec
Q 018048 300 KVREVAKEAIERARRG-EGPTLVECETYR 327 (361)
Q Consensus 300 ~v~~al~~Al~~ar~~-~gP~lIev~t~R 327 (361)
+ ++.|++++.+. ++|+||||.+.+
T Consensus 498 e----L~~al~~a~~~~~~p~lIev~i~~ 522 (535)
T TIGR03394 498 E----LAAALDKAFATRGRFQLIEAMLPR 522 (535)
T ss_pred H----HHHHHHHHHhcCCCeEEEEEECCc
Confidence 4 45566666554 458999998743
No 98
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.80 E-value=6.4e-20 Score=179.74 Aligned_cols=154 Identities=22% Similarity=0.314 Sum_probs=131.3
Q ss_pred CCCHHHHHHHHhcCcCC-----CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhc
Q 018048 156 GVPARAVMSELFGKATG-----CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEA 221 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g-----~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~ 221 (361)
-+.|+.++.+|.....+ ++....|+++||. +++.+ +++.|+||+++|+|||+..|
T Consensus 471 ~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA----------- 539 (675)
T KOG4166|consen 471 AIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVA----------- 539 (675)
T ss_pred ccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhccccc-----------
Confidence 37899999999887765 3455678888885 35555 68999999999999999999
Q ss_pred CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc------------CCcchhhccccCCcc
Q 018048 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT------------SDPQIYKKGPAFGMP 289 (361)
Q Consensus 222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~------------~~~d~~~~A~a~Gi~ 289 (361)
.|+.+||-+-||++|.|. .+||.|+.+.++||.+++.||+ ..++..+.|. .+|++.++|.|+|++
T Consensus 540 ~P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNe-eqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGik 616 (675)
T KOG4166|consen 540 NPDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNE-EQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIK 616 (675)
T ss_pred CcccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecch-hhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCc
Confidence 899999999999999999 9999999999999999999998 6676655431 479999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 290 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 290 ~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
+.+|...+ .++++++..+..+||+|+||.+....
T Consensus 617 alRV~K~e------dL~~k~keflsTkGPvLleV~v~~ke 650 (675)
T KOG4166|consen 617 ALRVTKKE------DLREKIKEFLSTKGPVLLEVIVPHKE 650 (675)
T ss_pred hheeehHH------HHHHHHHHHhCCCCCeEEEEEccCcc
Confidence 99998765 56777778889999999999986543
No 99
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.80 E-value=1.8e-19 Score=188.59 Aligned_cols=153 Identities=20% Similarity=0.210 Sum_probs=114.9
Q ss_pred CCCHHHHHHHHhcCcC---C-CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcC
Q 018048 156 GVPARAVMSELFGKAT---G-CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEAD 222 (361)
Q Consensus 156 g~~~~~~~~el~~~~~---g-~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~ 222 (361)
.+++..++.++....+ + ++..++|....+. .+.++ .+++|+||+++|+|+|+++|
T Consensus 372 ~l~~~~~~~~l~~~l~~~~d~iv~~~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la------------ 439 (569)
T PRK09259 372 PMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE------------ 439 (569)
T ss_pred CcCHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc------------
Confidence 4678888888777653 2 3444555432221 22232 45679999999999999998
Q ss_pred CCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc--cccc------c---cc-cCCcchhhccccCCccE
Q 018048 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI--GMSH------L---RA-TSDPQIYKKGPAFGMPG 290 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i--s~~~------~---~q-~~~~d~~~~A~a~Gi~~ 290 (361)
++++||+++|||+|+|+ .+||.||+++++|+++||.||+ ++ .... . .. ...+||.++|++||+++
T Consensus 440 ~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~ 516 (569)
T PRK09259 440 TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNG-GIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGGVG 516 (569)
T ss_pred CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeCh-hHHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCCeE
Confidence 47889999999999999 8999999999999999999998 33 1110 0 01 13679999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048 291 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329 (361)
Q Consensus 291 ~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~ 329 (361)
++|+..+ + +++|++++++.++|+||||.+.+..
T Consensus 517 ~~v~~~~--e----l~~al~~a~~~~~p~lIev~id~~~ 549 (569)
T PRK09259 517 YNVTTPD--E----LRHALTEAIASGKPTLINVVIDPAA 549 (569)
T ss_pred EEECCHH--H----HHHHHHHHHhCCCCEEEEEEECCCC
Confidence 9998765 4 5566666667789999999997543
No 100
>PLN02790 transketolase
Probab=99.80 E-value=5.7e-19 Score=187.25 Aligned_cols=141 Identities=25% Similarity=0.300 Sum_probs=116.4
Q ss_pred cccCCccccccccHHHHHHHHHHHHHHhhhhhc---CCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW 264 (361)
Q Consensus 189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~---~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y 264 (361)
++...+|++|.+++.|+|+|+|.|+.+...... -.+..|+|++|||++++|.++|+|++|+.++|| +|+||+||+|
T Consensus 99 gi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~ 178 (654)
T PLN02790 99 GIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHI 178 (654)
T ss_pred CccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCc
Confidence 455678999999999999999998753221110 026789999999999999999999999999998 8999999999
Q ss_pred ccccccccccCCcchhhccccCCccEEEEeC--CCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCCC
Q 018048 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDG--MDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLA 334 (361)
Q Consensus 265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg--~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~~ 334 (361)
+++.+...+. ..++.+++++||++++.||+ +|+.+++++++. +++ .++|++|+++|++..|.+..
T Consensus 179 ~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~----a~~~~~~P~lI~~~T~kG~G~~~~ 246 (654)
T PLN02790 179 SIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKE----AKAVTDKPTLIKVTTTIGYGSPNK 246 (654)
T ss_pred cccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHH----HHhcCCCeEEEEEEEeecCCCccc
Confidence 9988766443 56788999999999999988 798877665554 444 68999999999999998743
No 101
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.80 E-value=1.4e-18 Score=183.17 Aligned_cols=198 Identities=23% Similarity=0.287 Sum_probs=138.1
Q ss_pred eeeecCCCchhHHHHHHHhcC-CCc-EEEc-ccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccc-cC
Q 018048 117 GFVHLYNGQEAVSTGFIKLLK-KED-SVVS-TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNL-LG 192 (361)
Q Consensus 117 g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~-~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~-~~ 192 (361)
|+..++.|---+.+++...++ +.| +|+. -|....+.+..|. . +-+..+... . +-.| |........ ..
T Consensus 38 GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G~-~-~~l~~~r~~-g----~l~g--~p~~~e~~~d~~ 108 (617)
T TIGR00204 38 GHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTGR-R-EKFSTLRQK-K----GLHG--FPKRSESEYDVF 108 (617)
T ss_pred CCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhCc-H-HHhcchhhc-C----CcCC--CCcCCCCCCCcc
Confidence 666667776656556665566 455 5565 3555555555664 1 112222111 1 1112 211111111 24
Q ss_pred CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc
Q 018048 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR 272 (361)
Q Consensus 193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~ 272 (361)
..|++|.++++|+|+|+|.+++ +.+.+|+|++|||++++|.+||+|+.|+.++||+|+||+||+|+++.+...
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~-------~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~ 181 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKK-------GADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGA 181 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhh-------CCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchH
Confidence 5789999999999999999887 568899999999999999999999999999999999999999998876532
Q ss_pred cc-----------------------C-Ccc----hhhc--------------cccCCccEE-EEeCCCHHHHHHHHHHHH
Q 018048 273 AT-----------------------S-DPQ----IYKK--------------GPAFGMPGF-HVDGMDVLKVREVAKEAI 309 (361)
Q Consensus 273 q~-----------------------~-~~d----~~~~--------------A~a~Gi~~~-~Vdg~D~~~v~~al~~Al 309 (361)
+. . .+. +.++ .++||+.++ .|||+|+.++.+++
T Consensus 182 ~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al---- 257 (617)
T TIGR00204 182 LSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETL---- 257 (617)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHH----
Confidence 11 0 111 3232 778999999 89999999876655
Q ss_pred HHHHcCCCCEEEEEEEecCCCCCCC
Q 018048 310 ERARRGEGPTLVECETYRFRGHSLA 334 (361)
Q Consensus 310 ~~ar~~~gP~lIev~t~R~~gHs~~ 334 (361)
+.+++.++|++|+++|.+..|.+..
T Consensus 258 ~~ak~~~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 258 KNAKKLKGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred HHHhcCCCCEEEEEEecCCCCCchh
Confidence 4566778899999999999986654
No 102
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.80 E-value=6e-19 Score=170.66 Aligned_cols=142 Identities=18% Similarity=0.113 Sum_probs=104.6
Q ss_pred CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccc
Q 018048 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH 270 (361)
Q Consensus 193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~ 270 (361)
..++||+++|+|+|+++| .|++.||++.|||++ ++| .++|.+|+++++|+++||.||+ |++...+
T Consensus 68 ~~g~mG~alpaAiGaklA-----------~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ 134 (301)
T PRK05778 68 LHTLHGRAIAFATGAKLA-----------NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQ 134 (301)
T ss_pred cchhhccHHHHHHHHHHH-----------CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCc
Confidence 348999999999999999 799999999999997 588 9999999999999999999998 5442211
Q ss_pred cc----------------ccCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCC
Q 018048 271 LR----------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 333 (361)
Q Consensus 271 ~~----------------q~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~ 333 (361)
.. ....+|+.++|+++|+.++ ++...++.++ +++++++++.+||+||||.+.=... .
T Consensus 135 ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL----~~ai~~A~~~~GpalIeV~~~C~~~--~ 208 (301)
T PRK05778 135 ASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQL----VELIKKAISHKGFAFIDVLSPCVTF--N 208 (301)
T ss_pred ccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHH----HHHHHHHHhCCCCEEEEEcCCCCCC--C
Confidence 00 0124699999999999987 3344455565 4455555667899999987632111 1
Q ss_pred CCCCCCCCHHHHHhHHHhhh
Q 018048 334 ADPDELRDPGEHLVLVLFIF 353 (361)
Q Consensus 334 ~Dp~~yR~~~e~~~~~~~~~ 353 (361)
.-.+..+++.++-+|..+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~ 228 (301)
T PRK05778 209 GRNTSTKSPAYMREYYKKRV 228 (301)
T ss_pred CcCCcccCHHHHHHHHHhhc
Confidence 11334567777777766554
No 103
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.79 E-value=7.3e-18 Score=153.77 Aligned_cols=128 Identities=27% Similarity=0.412 Sum_probs=109.6
Q ss_pred cccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccc
Q 018048 189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG 267 (361)
Q Consensus 189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is 267 (361)
++-..+|++|+++++|+|.|++.|++ +.+..|++++|||..++|.+||++.+|++|+|. +|.||.-|...++
T Consensus 113 gve~stGSLGqGLsvavGmAlg~kl~-------~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~Qld 185 (243)
T COG3959 113 GVEVSTGSLGQGLSVAVGMALGAKLK-------GSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLD 185 (243)
T ss_pred ceeecCCcccccchHHHHHHHHHhhc-------CCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCcccC
Confidence 34456899999999999999999988 568899999999999999999999999999998 8888887765776
Q ss_pred cccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEec
Q 018048 268 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYR 327 (361)
Q Consensus 268 ~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R 327 (361)
..+..-.+..++.++-+||||++++|||+|++++++ |++.++.. ++|.+|-+.|.+
T Consensus 186 G~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~----a~~~~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 186 GETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVE----ALEKAKGSKGRPTVIIAKTVK 242 (243)
T ss_pred CchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHH----HHHhhhccCCCCeEEEEeccc
Confidence 666666677789999999999999999999988765 55555553 399999998865
No 104
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.79 E-value=2.2e-19 Score=168.52 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=110.5
Q ss_pred CCCCHHHHHHHHhcCcC--C--CcccCCCccccccc-------cccc----cCCccccccccHHHHHHHHHHHHHHhhhh
Q 018048 155 KGVPARAVMSELFGKAT--G--CCRGQGGSMHMFSK-------EHNL----LGGFAFIGEGIPVATGAAFTSKYRREVLK 219 (361)
Q Consensus 155 ~g~~~~~~~~el~~~~~--g--~~~gd~G~~h~~~~-------~~~~----~~~~g~mG~~lP~AiGaA~A~k~~~~~~~ 219 (361)
-|..-.-++.++...++ + ++..|.|.+.+|.. +.++ ..+.++||+++|+|||+++|.-..
T Consensus 9 ~gc~~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~----- 83 (237)
T cd02018 9 AGCGEVTAVRVVLAALPAPEDTVIANSTGCSSVYASTAPFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRE----- 83 (237)
T ss_pred cCCCcHHHHHHHHHHhCCCCCEEEEeCCCccceecccCcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccc-----
Confidence 34444445555554443 2 34556665555431 1121 224599999999999999882111
Q ss_pred hcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCCccccccc-cc-----------------ccCCcchh
Q 018048 220 EADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSH-LR-----------------ATSDPQIY 280 (361)
Q Consensus 220 ~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~-~~-----------------q~~~~d~~ 280 (361)
..++++|||++|||++. || .++|.++.++++||++||.||+ .+++.. +. ....+|++
T Consensus 84 -~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~-~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~ 159 (237)
T cd02018 84 -LDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNE-VYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLV 159 (237)
T ss_pred -cCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCc-cccCCCCCCCCCCcCCCcccccCCCCcCCCCCHH
Confidence 13689999999999997 78 8999999999999999999998 333322 11 11347999
Q ss_pred hccccCCccEEE---EeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCC
Q 018048 281 KKGPAFGMPGFH---VDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFR 329 (361)
Q Consensus 281 ~~A~a~Gi~~~~---Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~ 329 (361)
++|++||+++++ |+. +.+ ++.|++++++ .+||+||||.+.-..
T Consensus 160 ~iA~a~G~~~~~~~~v~~--~~~----l~~al~~al~~~~GP~lI~v~i~c~~ 206 (237)
T cd02018 160 LIAATHGCVYVARLSPAL--KKH----FLKVVKEAISRTDGPTFIHAYTPCIT 206 (237)
T ss_pred HHHHHCCCCEEEEEccCC--HHH----HHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 999999999986 554 445 4556666666 899999999975433
No 105
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.78 E-value=2.7e-19 Score=187.02 Aligned_cols=152 Identities=18% Similarity=0.106 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCccccc-----cc--cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMF-----SK--EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~-----~~--~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
.+++..++.+|....++ ++..+.|..+.+ .. +.++ ..++++||+++|+|+|+++| ++
T Consensus 375 ~i~~~~~~~~l~~~l~~~~iv~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala------------~~ 442 (568)
T PRK07449 375 TFTEAKVAAALADLLPEGGQLFVGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA------------SA 442 (568)
T ss_pred CccHHHHHHHHHHhCCCCCeEEEECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc------------CC
Confidence 36778888888887764 344555554322 11 1222 34568899999999999998 57
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccc-ccccccc-----------cCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAI-GMSHLRA-----------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~i-s~~~~~q-----------~~~~d~~~~A~a~Gi~~~ 291 (361)
++|||++|||+|+|+ .+||.|++++++|+++||.||+ |++ ......| ...+||+++|++||++++
T Consensus 443 ~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~ 520 (568)
T PRK07449 443 KPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYH 520 (568)
T ss_pred CCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCcc
Confidence 889999999999998 8999999999999999999998 442 2221111 135799999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
+|+..+ + +++|++++.+.++|+||||.+.+
T Consensus 521 ~V~~~~--e----L~~al~~a~~~~~p~lIev~id~ 550 (568)
T PRK07449 521 RPETWA--E----LEEALADALPTPGLTVIEVKTNR 550 (568)
T ss_pred CCCCHH--H----HHHHHHHHhcCCCCEEEEEeCCh
Confidence 998665 4 56666666677899999998843
No 106
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.78 E-value=4.4e-17 Score=161.06 Aligned_cols=160 Identities=21% Similarity=0.114 Sum_probs=127.5
Q ss_pred ccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCccccc
Q 018048 190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGM 268 (361)
Q Consensus 190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~ 268 (361)
+...+|++|.+++.|+|.|+|.|+....+...+.+..|+|++|||.+++|.+||++++|+.++|. +|+||.+|++.+..
T Consensus 113 ve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG 192 (386)
T cd02017 113 WEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDG 192 (386)
T ss_pred eeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCC
Confidence 45578999999999999999998754332222457889999999999999999999999999996 99999999887776
Q ss_pred ccccc-cCCcchhhccccCCccEEEEe-----------------------------------------------------
Q 018048 269 SHLRA-TSDPQIYKKGPAFGMPGFHVD----------------------------------------------------- 294 (361)
Q Consensus 269 ~~~~q-~~~~d~~~~A~a~Gi~~~~Vd----------------------------------------------------- 294 (361)
+.... ....++.++.++|||.++.|+
T Consensus 193 ~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~ 272 (386)
T cd02017 193 PVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKA 272 (386)
T ss_pred cccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHH
Confidence 65543 345789999999999999998
Q ss_pred ----------------CCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCC-C--CCC----CCCCHHHHHhHHH
Q 018048 295 ----------------GMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSL-A--DPD----ELRDPGEHLVLVL 350 (361)
Q Consensus 295 ----------------g~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~-~--Dp~----~yR~~~e~~~~~~ 350 (361)
|+|+.++++++.+ +.. .++|++|.+.|....|.+. . +.. ..-+++|++....
T Consensus 273 ~~~~~~d~~~~~~~~gGhD~~~i~~A~~~----a~~~~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~ 348 (386)
T cd02017 273 LVTDLSDEDLWALNRGGHDPRKVYAAYKK----AVEHKGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRD 348 (386)
T ss_pred HhhcccHHhhhhhccCCCCHHHHHHHHHH----HHhCCCCCeEEEEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHH
Confidence 9998887665554 443 4689999999999999873 2 222 2347888888776
Q ss_pred hhh
Q 018048 351 FIF 353 (361)
Q Consensus 351 ~~~ 353 (361)
...
T Consensus 349 ~lg 351 (386)
T cd02017 349 RFG 351 (386)
T ss_pred HcC
Confidence 654
No 107
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.76 E-value=5e-18 Score=168.24 Aligned_cols=167 Identities=17% Similarity=0.240 Sum_probs=118.7
Q ss_pred CCHHHHHHHHhcCcCC--CcccCCCccc--ccc---c-----cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048 157 VPARAVMSELFGKATG--CCRGQGGSMH--MFS---K-----EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD 224 (361)
Q Consensus 157 ~~~~~~~~el~~~~~g--~~~gd~G~~h--~~~---~-----~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~ 224 (361)
+++++++.++....+. .+..+.|..- ++. . ++.+. ..|+||+++|+|+|+++| .++
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~-~~GsMG~a~p~AlG~ala-----------~p~ 239 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFL-TVGSMGHASQIALGLALA-----------RPD 239 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCceE-eechhhhHHHHHHHHHHH-----------CCC
Confidence 6778888888777653 3445555421 111 1 23333 359999999999999999 689
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCC-CeEEEEEcCCcccccccc--cccCCcchhhccccCCc-cEEEEeCCCHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNLWAIGMSHL--RATSDPQIYKKGPAFGM-PGFHVDGMDVLK 300 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~L-Pvi~VV~NN~y~is~~~~--~q~~~~d~~~~A~a~Gi-~~~~Vdg~D~~~ 300 (361)
++|||+.|||+|.|. .++|.|++++++ |+++||.||+ +++.... .....+|+.++|++||+ .+++|+.. .+
T Consensus 240 r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg-~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v~~~--~e 314 (361)
T TIGR03297 240 QRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNG-AHDSVGGQPTVSQHLDFAQIAKACGYAKVYEVSTL--EE 314 (361)
T ss_pred CCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCc-cccccCCcCCCCCCCCHHHHHHHCCCceEEEeCCH--HH
Confidence 999999999999998 899999999997 7999999998 3332211 11235899999999997 56777654 45
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHH
Q 018048 301 VREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHL 346 (361)
Q Consensus 301 v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~ 346 (361)
+ .+|++++++.++|+||||++.....-....|+ .++.|..
T Consensus 315 L----~~al~~a~~~~gp~lIeV~v~~g~~~~l~rp~--~~p~e~~ 354 (361)
T TIGR03297 315 L----ETALTAASSANGPRLIEVKVRPGSRADLGRPT--TSPPENK 354 (361)
T ss_pred H----HHHHHHHHhCCCcEEEEEEecCCCccCCCCCC--CCHHHHH
Confidence 5 45555566678999999999775543333333 4555543
No 108
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.75 E-value=4.4e-17 Score=172.49 Aligned_cols=198 Identities=22% Similarity=0.217 Sum_probs=128.0
Q ss_pred eeeecCCCchhHHHHHHHhcC-CCc-EEEcc-cCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCC
Q 018048 117 GFVHLYNGQEAVSTGFIKLLK-KED-SVVST-YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGG 193 (361)
Q Consensus 117 g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~~-yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~ 193 (361)
|+..++.|---+.+++...++ +.| +|++. |-...+.+..|. . +-+..+... .+ -.|.......+... ..
T Consensus 46 GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~~~~l~g~-~-~~l~~~r~~-~~----l~g~p~~~e~~~~~-~~ 117 (641)
T PRK12571 46 GHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYPHKILTGR-R-DRFRTLRQK-GG----LSGFTKRSESEYDP-FG 117 (641)
T ss_pred CCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHHHHHHhCC-H-HHHhhhhhC-CC----cCCCCCCCcCCCCC-cc
Confidence 667677777666666655555 445 55653 555555555553 2 222222211 11 11211110111111 11
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc--
Q 018048 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-- 271 (361)
Q Consensus 194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~-- 271 (361)
.++-+.+++.|+|+|+|.++. .+++.|+|++|||++++|.++|+|++|+++++|+++|+.||+|.++.+..
T Consensus 118 ~g~~~gslg~a~G~A~a~~~~-------~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~ 190 (641)
T PRK12571 118 AAHSSTSISAALGFAKARALG-------QPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGAL 190 (641)
T ss_pred cCCCcChHHHHHHHHHHHHHh-------CCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHH
Confidence 222344566677777776655 57899999999999999999999999999999999999999998876552
Q ss_pred -----cccCCcch-----------------------------------hhccccCCccEE-EEeCCCHHHHHHHHHHHHH
Q 018048 272 -----RATSDPQI-----------------------------------YKKGPAFGMPGF-HVDGMDVLKVREVAKEAIE 310 (361)
Q Consensus 272 -----~q~~~~d~-----------------------------------~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~ 310 (361)
.-.....+ .++.++|||.++ .|||+|+.++.+++ +
T Consensus 191 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al----~ 266 (641)
T PRK12571 191 AAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVL----R 266 (641)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHH----H
Confidence 11111111 367889999999 79999988776544 4
Q ss_pred HHHc-CCCCEEEEEEEecCCCCCC
Q 018048 311 RARR-GEGPTLVECETYRFRGHSL 333 (361)
Q Consensus 311 ~ar~-~~gP~lIev~t~R~~gHs~ 333 (361)
.+++ .++|++|.++|.+..|.+.
T Consensus 267 ~ak~~~~~P~~I~~~T~kGkG~~~ 290 (641)
T PRK12571 267 AARARADGPVLVHVVTEKGRGYAP 290 (641)
T ss_pred HHHhCCCCCEEEEEEecCccCcch
Confidence 4554 4789999999999888763
No 109
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.74 E-value=5.4e-18 Score=163.13 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=91.2
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCc-ccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc
Q 018048 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL 271 (361)
Q Consensus 194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs-~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~ 271 (361)
.++||+++|+|+|+++| .|+++||+++|||+ |++| .++|.+|+++++||++||.||+ |++.....
T Consensus 68 ~g~mG~alpaAiGaklA-----------~Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~ 134 (286)
T PRK11867 68 HTIHGRALAIATGLKLA-----------NPDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTKGQY 134 (286)
T ss_pred hhhhhcHHHHHHHHHHh-----------CCCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhcCcc
Confidence 38999999999999999 79999999999995 8899 9999999999999999999998 55422111
Q ss_pred cc----------------cCCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 272 RA----------------TSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 272 ~q----------------~~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
.. ....++.++|.++|+.++. +...++.++ +.+++++++.+||+||||.+.
T Consensus 135 s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el----~~al~~Al~~~Gp~lIev~~~ 202 (286)
T PRK11867 135 SPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQL----TELIKAAINHKGFSFVEILQP 202 (286)
T ss_pred CCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHH----HHHHHHHHhCCCCEEEEEeCC
Confidence 00 0125789999999998873 344555555 555556666789999999763
No 110
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.74 E-value=6.4e-18 Score=161.80 Aligned_cols=118 Identities=21% Similarity=0.172 Sum_probs=93.2
Q ss_pred CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCC-cccccc
Q 018048 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (361)
Q Consensus 192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~ 269 (361)
+..+.||+++|+|+|+++| .|+++||++.|||++. +| .++|.+|+++++||++||.||+ |++...
T Consensus 57 ~~~~~mG~alp~AiGaklA-----------~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~ 123 (280)
T PRK11869 57 GFHTLHGRAIPAATAVKAT-----------NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKG 123 (280)
T ss_pred CCCcccccHHHHHHHHHHH-----------CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcc
Confidence 3446799999999999999 7899999999999998 67 8999999999999999999998 554221
Q ss_pred ccc----------------ccCCcchhhccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 270 HLR----------------ATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 270 ~~~----------------q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
+.. ....+|+.++|+++|++++... -.++.++ .++++++.+.+||+||||.+.
T Consensus 124 Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l----~~~i~~Al~~~Gp~lIeV~~p 193 (280)
T PRK11869 124 QASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEET----KEILKEAIKHKGLAIVDIFQP 193 (280)
T ss_pred eecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHH----HHHHHHHHhCCCCEEEEEECC
Confidence 110 0123699999999999988743 4466665 445555667799999999874
No 111
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.73 E-value=1.8e-17 Score=158.73 Aligned_cols=118 Identities=23% Similarity=0.280 Sum_probs=94.1
Q ss_pred CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCC-cccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccc
Q 018048 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (361)
Q Consensus 192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDG-s~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~ 269 (361)
...++||+++|+|+|+++| .|+++||++.||| +|.+| .++|.+|+++|+|+++||.||+ |++...
T Consensus 56 ~~~~~~G~alp~A~GaklA-----------~Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygmtgg 122 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWA-----------NPKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGLTTG 122 (279)
T ss_pred CcccccccHHHHHHHHHHH-----------CCCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhhhcc
Confidence 4578999999999999999 7999999999999 69999 9999999999999999999998 554321
Q ss_pred ccccc----------------CCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 270 HLRAT----------------SDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 270 ~~~q~----------------~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
++..+ ...|+.++|+++|++++. ....++.++ +++++++++.+||++||+...
T Consensus 123 Q~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l----~~~l~~Al~~~Gps~I~v~~p 192 (279)
T PRK11866 123 QASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHL----KEIIKEAIKHKGFSFIDVLSP 192 (279)
T ss_pred cccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHH----HHHHHHHHhCCCCEEEEEeCC
Confidence 11100 013899999999999874 455666665 555556667899999999763
No 112
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.72 E-value=3.1e-17 Score=172.65 Aligned_cols=162 Identities=22% Similarity=0.167 Sum_probs=125.0
Q ss_pred CCcchhhcCCCCHHHHHHHHhcCcCC--CcccCCCccccccc-cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048 147 RDHVHALSKGVPARAVMSELFGKATG--CCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADC 223 (361)
Q Consensus 147 R~~~~~l~~g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~-~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~ 223 (361)
.++...+.-|.+...++.+|....+. +..+|.|.+.+|.. +..+...+++||+++|+|+|+++| .+
T Consensus 352 ~~r~~~~C~GCp~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~p~~~~~~~~~mG~~~~~AiGa~~a-----------~p 420 (595)
T TIGR03336 352 PVRPPSLCAGCPHRATFYAMKKVADREAIFPSDIGCYTLGIQPPLGTVDTTLCMGASIGVASGLSKA-----------GE 420 (595)
T ss_pred CCCCCCCCCCCCChHHHHHHHHhccCCcEEecCcchhhccccCCccccceeeccCchHHHHhhhhhc-----------CC
Confidence 34556677888888899988888763 46688887766542 334445578999999999999999 78
Q ss_pred CceEEEEECCCcccC-cchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc-c---------cCCcchhhccccCCccEE
Q 018048 224 DHVTLAFFGDGTCNN-GQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR-A---------TSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~-g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~-q---------~~~~d~~~~A~a~Gi~~~ 291 (361)
+++||+++|||+|.+ | .++|.||+++++|+++||.||+ |++....+. . ...+|+.++|++||++++
T Consensus 421 ~~~Vv~i~GDG~f~~~g--~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~ 498 (595)
T TIGR03336 421 KQRIVAFIGDSTFFHTG--IPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFV 498 (595)
T ss_pred CCCEEEEeccchhhhcC--HHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEE
Confidence 999999999999996 6 8999999999999999999997 554221110 0 124789999999999999
Q ss_pred EEeCCC-HHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 292 HVDGMD-VLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 292 ~Vdg~D-~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
+|...+ +.+ +..+++++++.++|++|++..
T Consensus 499 ~v~~~~~l~~----l~~al~~a~~~~gp~li~v~~ 529 (595)
T TIGR03336 499 EVVDPLNVKE----TIEVFKAALAAEGVSVIIAKQ 529 (595)
T ss_pred EEeCcCCHHH----HHHHHHHHHhcCCCEEEEEcc
Confidence 997764 333 455666666778999999965
No 113
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.72 E-value=2.7e-17 Score=157.99 Aligned_cols=116 Identities=22% Similarity=0.262 Sum_probs=88.6
Q ss_pred CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCC-ccccccc
Q 018048 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH 270 (361)
Q Consensus 193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~ 270 (361)
..+.||+++|+|+|+++| .|+++||+++|||++. +| .++|.+|+++++||++||.||+ |++...+
T Consensus 51 ~~t~mG~alPaAiGaklA-----------~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ 117 (287)
T TIGR02177 51 FHGLHGRALPVATGIKLA-----------NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQ 117 (287)
T ss_pred cccccccHHHHHHHHHHH-----------CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcc
Confidence 346689999999999999 7999999999999975 88 9999999999999999999998 5442211
Q ss_pred cccc------------------CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 271 LRAT------------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 271 ~~q~------------------~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
+..+ .++++.++|.++|+.+...- .++.++ ++++++|.+.+||+||||.+.
T Consensus 118 ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL----~~ai~~Al~~~GpslIeV~~p 186 (287)
T TIGR02177 118 ASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHL----KEIIKEAINHKGYALVDILQP 186 (287)
T ss_pred cccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHH----HHHHHHHHhCCCCEEEEEeCC
Confidence 1100 13457788888887766522 455565 555555667899999999874
No 114
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.72 E-value=9.1e-16 Score=163.69 Aligned_cols=171 Identities=19% Similarity=0.073 Sum_probs=130.9
Q ss_pred CccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEE
Q 018048 179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVF 257 (361)
Q Consensus 179 G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~ 257 (361)
+..|.+..+..+-..+|+||.|++.|+|.|++.|+....+.....++.|+|++|||.+++|.++|++.+|++++|. +++
T Consensus 173 shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~ 252 (885)
T TIGR00759 173 SYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTF 252 (885)
T ss_pred CCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEE
Confidence 3334433233344567999999999999999999854433222467899999999999999999999999999998 999
Q ss_pred EEEcCCcccccccccccC-CcchhhccccCCccEEEE-------------------------------------------
Q 018048 258 VVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV------------------------------------------- 293 (361)
Q Consensus 258 VV~NN~y~is~~~~~q~~-~~d~~~~A~a~Gi~~~~V------------------------------------------- 293 (361)
||.+|...+..+...... ..++.++.+++||.+++|
T Consensus 253 IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~ 332 (885)
T TIGR00759 253 VINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVRE 332 (885)
T ss_pred EEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHH
Confidence 999998787766554333 457999999999999999
Q ss_pred --------------------------eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCC---CCCC----CCC
Q 018048 294 --------------------------DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL---ADPD----ELR 340 (361)
Q Consensus 294 --------------------------dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~---~Dp~----~yR 340 (361)
+|+|+.++++++..|.+ ..++|++|.++|.+.+|.+. .+.. ..-
T Consensus 333 ~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~---~~grPTvIlA~TvKG~G~~~~~e~~n~~H~~k~l 409 (885)
T TIGR00759 333 HFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQE---HKGQPTVILAKTIKGYGMGDAAESRNTAHQVKKL 409 (885)
T ss_pred HhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHh---CCCCCEEEEEeeeecCCCChhhCCCcccccCCCC
Confidence 59999998887766543 23579999999999998772 2222 234
Q ss_pred CHHHHHhHHHhh
Q 018048 341 DPGEHLVLVLFI 352 (361)
Q Consensus 341 ~~~e~~~~~~~~ 352 (361)
+.++++.+...+
T Consensus 410 ~~e~l~~~r~~~ 421 (885)
T TIGR00759 410 EVDALKNFRDRF 421 (885)
T ss_pred CHHHHHHHHHHc
Confidence 788887775544
No 115
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.71 E-value=1.2e-15 Score=164.26 Aligned_cols=258 Identities=17% Similarity=0.135 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHH-HHHHHhcCC------CcEEEcccCCcchh------
Q 018048 86 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVS-TGFIKLLKK------EDSVVSTYRDHVHA------ 152 (361)
Q Consensus 86 ~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~-vg~~~~l~~------~D~v~~~yR~~~~~------ 152 (361)
+.++.+-....++...++.........+++.|+..++.+.--+. +.....|+. +|+|++.- |+..
T Consensus 71 d~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD~VlskG--Hasp~lYA~l 148 (889)
T TIGR03186 71 DLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGDLVYFQP--HSAPGVYARA 148 (889)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCCEEEECC--chHHHHHHHH
Confidence 33444555555544444433222222345556555544443332 223344552 57777652 3221
Q ss_pred hcCCC-CHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE
Q 018048 153 LSKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 231 (361)
Q Consensus 153 l~~g~-~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~ 231 (361)
...|. +.++ +..+.....+ .+-.+..|.+..+..+-..+|+||.|++.|+|.|++.||..+.+.....+..|+|++
T Consensus 149 ~l~G~l~~e~-L~~fRq~~~~--~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~ll 225 (889)
T TIGR03186 149 FLEGFLSDAQ-LAHYRQEIAG--PGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFF 225 (889)
T ss_pred HHcCCCCHHH-HHHhcCCCCC--CCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEE
Confidence 11343 3333 3334322111 122233344332223445689999999999999999997654311123568899999
Q ss_pred CCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccccccccC-CcchhhccccCCccEEEE----------------
Q 018048 232 GDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV---------------- 293 (361)
Q Consensus 232 GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~q~~-~~d~~~~A~a~Gi~~~~V---------------- 293 (361)
|||.+++|.++|++.+|++++|. +|+||.+|...+..+...... ..++.++.++|||.++.|
T Consensus 226 GDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~ 305 (889)
T TIGR03186 226 GDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATG 305 (889)
T ss_pred cchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccch
Confidence 99999999999999999999998 999999998777666554222 468999999999999999
Q ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHHHcCCCCEE
Q 018048 294 -----------------------------------------------------DGMDVLKVREVAKEAIERARRGEGPTL 320 (361)
Q Consensus 294 -----------------------------------------------------dg~D~~~v~~al~~Al~~ar~~~gP~l 320 (361)
+|+|+.++++++++|.+ ..++|++
T Consensus 306 ~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~---~~~~PTv 382 (889)
T TIGR03186 306 ALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR---HEGRPTV 382 (889)
T ss_pred HHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEE
Confidence 59999999887776653 2368999
Q ss_pred EEEEEecCCCCCCC-CC-----C-CCCCHHHHHhHHHh
Q 018048 321 VECETYRFRGHSLA-DP-----D-ELRDPGEHLVLVLF 351 (361)
Q Consensus 321 Iev~t~R~~gHs~~-Dp-----~-~yR~~~e~~~~~~~ 351 (361)
|.++|...+|-+.. +. + ..-++++++.+...
T Consensus 383 Ila~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~ 420 (889)
T TIGR03186 383 ILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDR 420 (889)
T ss_pred EEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHH
Confidence 99999998885432 21 1 33466666655443
No 116
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.71 E-value=4.7e-17 Score=159.56 Aligned_cols=156 Identities=23% Similarity=0.302 Sum_probs=114.5
Q ss_pred ccCCccccccccHHHHHHHHHHHHHHhhhhh---cCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcc
Q 018048 190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWA 265 (361)
Q Consensus 190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~---~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~ 265 (361)
+-..+|+||.|++.|+|+|+|.|+.+..... ..-+..|+|++|||.+++|.++|++.+|+.++|. +|+|+.+|+..
T Consensus 106 ie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q 185 (332)
T PF00456_consen 106 IEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQ 185 (332)
T ss_dssp -SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEE
T ss_pred eEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcc
Confidence 3346899999999999999999887544321 1236789999999999999999999999999999 99999999877
Q ss_pred cccccccccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecCCCCCCCC-CC--CC-
Q 018048 266 IGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFRGHSLAD-PD--EL- 339 (361)
Q Consensus 266 is~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~~gHs~~D-p~--~y- 339 (361)
+....... ...|+.++.++||+.++.| ||+|+.++++++.+ ++.. ++|++|.+.|....|.+... .. .+
T Consensus 186 ~dg~~~~~-~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~----a~~~~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg~ 260 (332)
T PF00456_consen 186 IDGPTDIV-FSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEE----AKASKGKPTVIIARTVKGKGVPFMEGTAKWHGS 260 (332)
T ss_dssp TTEEGGGT-HHSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHH----HHHSTSS-EEEEEEE-TTTTSTTTTTSGGGTSS
T ss_pred cCCCcccc-cchHHHHHHHHhhhhhcccccCcHHHHHHHHHHH----HHhcCCCCceeecceEEecCchhhcccchhhcc
Confidence 76554432 2467899999999999998 99999887665554 4444 79999999999999986542 21 12
Q ss_pred -CCHHHHHhHHH
Q 018048 340 -RDPGEHLVLVL 350 (361)
Q Consensus 340 -R~~~e~~~~~~ 350 (361)
-+++|++....
T Consensus 261 ~l~~ee~~~~k~ 272 (332)
T PF00456_consen 261 PLTEEEVEQAKK 272 (332)
T ss_dssp --HHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 25666655544
No 117
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.70 E-value=1.2e-15 Score=160.37 Aligned_cols=200 Identities=17% Similarity=0.197 Sum_probs=132.2
Q ss_pred ceeeecCCCchhHHHHHHHhcC-CCc-EEEcc-cCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCC-cccccccc-ccc
Q 018048 116 FGFVHLYNGQEAVSTGFIKLLK-KED-SVVST-YRDHVHALSKGVPARAVMSELFGKATGCCRGQGG-SMHMFSKE-HNL 190 (361)
Q Consensus 116 ~g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~~-yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G-~~h~~~~~-~~~ 190 (361)
.|++.++.|---+.+++...++ +.| +|+.. |-..++.+..|.. +..... .-.+| +.|.-... ...
T Consensus 103 ~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~---------~~l~t~-r~~ggl~G~p~~~es~~d 172 (641)
T PLN02234 103 GGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRR---------GKMKTI-RQTNGLSGYTKRRESEHD 172 (641)
T ss_pred CCCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhh---------hhhccc-ccCCCcCCCCCCCCCCCc
Confidence 4777777887666666665565 456 44442 4444444333221 111111 11111 11211111 122
Q ss_pred cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc----
Q 018048 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI---- 266 (361)
Q Consensus 191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i---- 266 (361)
..+.|++|.++++|+|.|+|.+++ +.+..|+|++|||++++|.+||+|+.|+..+-++|+||.+|+..+
T Consensus 173 ~~~tGslg~glS~a~GmA~a~~l~-------g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~ 245 (641)
T PLN02234 173 SFGTGHSSTTLSAGLGMAVGRDLK-------GMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTA 245 (641)
T ss_pred EECCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCccccc
Confidence 346799999999999999998877 467889999999999999999999999977777999999998521
Q ss_pred --cccccccc-----------CC----cchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 267 --GMSHLRAT-----------SD----PQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 267 --s~~~~~q~-----------~~----~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
..+...-. .. .+..++.++||+.++ .|||+|+.++.++++.+- ....++|++|.++|.+.
T Consensus 246 q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k--~~~~~~P~vI~~~T~KG 323 (641)
T PLN02234 246 NLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLK--STKTIGPVLIHVVTEKG 323 (641)
T ss_pred ccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHH--hcCCCCCEEEEEEEecC
Confidence 11111000 00 245678899999999 999999998776665431 11235899999999999
Q ss_pred CCCCCC
Q 018048 329 RGHSLA 334 (361)
Q Consensus 329 ~gHs~~ 334 (361)
.|.+..
T Consensus 324 kGv~~~ 329 (641)
T PLN02234 324 RGYPYA 329 (641)
T ss_pred CCcchh
Confidence 988865
No 118
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.70 E-value=5.6e-16 Score=164.07 Aligned_cols=197 Identities=18% Similarity=0.249 Sum_probs=130.4
Q ss_pred eeeecCCCchhHHHHHHHhcC-CCcE-EEc-ccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCcccccccc-ccccC
Q 018048 117 GFVHLYNGQEAVSTGFIKLLK-KEDS-VVS-TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKE-HNLLG 192 (361)
Q Consensus 117 g~~~~~~GqEa~~vg~~~~l~-~~D~-v~~-~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~-~~~~~ 192 (361)
|+..++.|---+.+++...++ +.|. |+. -|-..++.+..|.. ++ +..+. +..+ -.| |.-..+ ....-
T Consensus 71 GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~gr~-~~-l~~~r-~~g~----l~g--~p~~~e~~~~~~ 141 (677)
T PLN02582 71 GHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGRR-DK-MHTMR-QTNG----LSG--FTKRAESEYDCF 141 (677)
T ss_pred CCcCccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHHccH-HH-hcccc-cCCC----cCC--CCCCCCCCCcee
Confidence 666677777666666665565 5674 444 35444454444431 11 11111 1111 111 211111 11234
Q ss_pred CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccc--
Q 018048 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH-- 270 (361)
Q Consensus 193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~-- 270 (361)
+.|++|.+++.|+|+|+|.+++ +.++.|+|++|||++++|.+||+|+.|+.+++|+++||+||+. +|.|+
T Consensus 142 ~~G~~g~~ls~a~G~A~a~~~~-------~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~-~s~~~~~ 213 (677)
T PLN02582 142 GTGHSSTTISAGLGMAVGRDLK-------GKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPTAT 213 (677)
T ss_pred ccchhhhhHHHHHHHHHHHHhc-------CCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCC-ccccccc
Confidence 5799999999999999998877 5678999999999999999999999999999999999999983 23211
Q ss_pred -----ccc--c--------CC---------------------cchh----------------hccccCCccEE-EEeCCC
Q 018048 271 -----LRA--T--------SD---------------------PQIY----------------KKGPAFGMPGF-HVDGMD 297 (361)
Q Consensus 271 -----~~q--~--------~~---------------------~d~~----------------~~A~a~Gi~~~-~Vdg~D 297 (361)
... . .. .++. .+.++||+.|+ .|||+|
T Consensus 214 ~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd 293 (677)
T PLN02582 214 LDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN 293 (677)
T ss_pred cCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCC
Confidence 000 0 00 0010 24678999988 999999
Q ss_pred HHHHHHHHHHHHHHHHcC--CCCEEEEEEEecCCCCCCC
Q 018048 298 VLKVREVAKEAIERARRG--EGPTLVECETYRFRGHSLA 334 (361)
Q Consensus 298 ~~~v~~al~~Al~~ar~~--~gP~lIev~t~R~~gHs~~ 334 (361)
+.++.++++ .++.. ++|++|+++|.+..|...+
T Consensus 294 ~~~L~~al~----~~k~~~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 294 IDDLVTILR----EVKSTKTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHHHHHHH----HHHhcCCCCCEEEEEEecCCCCCChh
Confidence 988765544 45553 5999999999999888765
No 119
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.70 E-value=3.7e-16 Score=150.70 Aligned_cols=169 Identities=16% Similarity=0.122 Sum_probs=125.9
Q ss_pred ccCCcchhhcCCCCHH-HHHHHHhcCcC------CCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhh
Q 018048 145 TYRDHVHALSKGVPAR-AVMSELFGKAT------GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREV 217 (361)
Q Consensus 145 ~yR~~~~~l~~g~~~~-~~~~el~~~~~------g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~ 217 (361)
-||+|+...+.|.++. +++.+..+... |+..+.+|.+|+.. .++......+|.++++|.|+++|.+.++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~-- 89 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARG-- 89 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhC--
Confidence 4788888877787776 77777776544 44444445443322 2455668899999999999999987763
Q ss_pred hhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------------cCCcchh
Q 018048 218 LKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------------TSDPQIY 280 (361)
Q Consensus 218 ~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------------~~~~d~~ 280 (361)
.++..|++++|||++..+.+ ++|+.|+.+++||++||.||+|...+-.|.. ....|+.
T Consensus 90 ----~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~ 164 (300)
T PRK11864 90 ----EKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVP 164 (300)
T ss_pred ----CCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHH
Confidence 23456677999999997764 9999999999999999999996554432211 1235889
Q ss_pred hccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 281 KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 281 ~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
+++.++|++++ +++..|+.++.+.+++|+ +.+||.+|++.+.
T Consensus 165 ~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~----~~~Gps~I~~~sp 207 (300)
T PRK11864 165 DIMAAHKVPYVATASIAYPEDFIRKLKKAK----EIRGFKFIHLLAP 207 (300)
T ss_pred HHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEEEeCC
Confidence 99999999988 778888888766555554 5789999999763
No 120
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.68 E-value=3.4e-15 Score=161.27 Aligned_cols=258 Identities=18% Similarity=0.129 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhH-HHHHHHhcC------CCcEEEcccCCcchh------
Q 018048 86 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAV-STGFIKLLK------KEDSVVSTYRDHVHA------ 152 (361)
Q Consensus 86 ~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~-~vg~~~~l~------~~D~v~~~yR~~~~~------ 152 (361)
+.++.+-.+..++-..++.-.......+++.|+..++.+.--+ .++....|+ ..|.|+.. +|+..
T Consensus 85 d~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA~~ 162 (896)
T PRK13012 85 DLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGDLVYFQ--PHSAPGIYARA 162 (896)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCCEEEEC--cchHHHHHHHH
Confidence 3345554555554444443333333345566665554444322 222333455 46777664 33321
Q ss_pred hcCC-CCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE
Q 018048 153 LSKG-VPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 231 (361)
Q Consensus 153 l~~g-~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~ 231 (361)
...| ++.++ +..+..... ..|-.+..|.+.-+..+--.+|+||.|++.|+|.|++.||....+.....++.|+|++
T Consensus 163 ~l~G~l~~e~-L~~fR~~~~--~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~l 239 (896)
T PRK13012 163 FLEGRLSEEQ-LDHFRQEIG--GPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFF 239 (896)
T ss_pred HHcCCCCHHH-HHHhcCCCC--CCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEE
Confidence 1134 23333 333332211 1222333343332323444679999999999999999886533221124678999999
Q ss_pred CCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccccccccC-CcchhhccccCCccEEEE----------------
Q 018048 232 GDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV---------------- 293 (361)
Q Consensus 232 GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~q~~-~~d~~~~A~a~Gi~~~~V---------------- 293 (361)
|||.+++|..+|++.+|++++|. +++||.+|...+..+...... ..++.++.+++||.+++|
T Consensus 240 GDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~ 319 (896)
T PRK13012 240 GDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTG 319 (896)
T ss_pred chhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCcc
Confidence 99999999999999999999998 999999998777666554333 368999999999999999
Q ss_pred ----------e-------------------------------------------CCCHHHHHHHHHHHHHHHHcCCCCEE
Q 018048 294 ----------D-------------------------------------------GMDVLKVREVAKEAIERARRGEGPTL 320 (361)
Q Consensus 294 ----------d-------------------------------------------g~D~~~v~~al~~Al~~ar~~~gP~l 320 (361)
| |+|+.+++++++.|.+ ..++|++
T Consensus 320 ~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~---~~~~Ptv 396 (896)
T PRK13012 320 ALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR---HKGQPTV 396 (896)
T ss_pred HHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEE
Confidence 8 9999999887766543 2457999
Q ss_pred EEEEEecCCCCCCC-CCC------CCCCHHHHHhHHHh
Q 018048 321 VECETYRFRGHSLA-DPD------ELRDPGEHLVLVLF 351 (361)
Q Consensus 321 Iev~t~R~~gHs~~-Dp~------~yR~~~e~~~~~~~ 351 (361)
|.++|.+.+|-+.. ..+ .--++++++.+...
T Consensus 397 Ila~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~ 434 (896)
T PRK13012 397 ILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDR 434 (896)
T ss_pred EEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHH
Confidence 99999999886521 211 23466776665443
No 121
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.63 E-value=2.7e-14 Score=153.95 Aligned_cols=258 Identities=18% Similarity=0.144 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhH-HHHHHHhcCC------CcEEEcccCCcchh------
Q 018048 86 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAV-STGFIKLLKK------EDSVVSTYRDHVHA------ 152 (361)
Q Consensus 86 ~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~-~vg~~~~l~~------~D~v~~~yR~~~~~------ 152 (361)
+.++.+.....++...++.-........++.|+..++.+.--+ .++....|+. +|+|+.. +|+..
T Consensus 77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA~~ 154 (891)
T PRK09405 77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGDLVFFQ--GHASPGIYARA 154 (891)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCCEEEEC--chHHHHHHHHH
Confidence 4456666666665455544333322233454555444433222 2233344553 5777754 33322
Q ss_pred hcCCC-CHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE
Q 018048 153 LSKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 231 (361)
Q Consensus 153 l~~g~-~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~ 231 (361)
...|. +.++ +..+....++ .+-.+..|.+..+..+...+++||.|++.|+|.|++.||..+..-....++.|+|++
T Consensus 155 ~l~G~l~~e~-L~~fR~~~~g--~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~ 231 (891)
T PRK09405 155 FLEGRLTEEQ-LDNFRQEVDG--KGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFL 231 (891)
T ss_pred HHcCCCCHHH-HHHhcCCCCC--CCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEE
Confidence 11342 3333 3333332111 122333344332322334568999999999999999886432211114578999999
Q ss_pred CCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccccccccC-CcchhhccccCCccEEEE----------------
Q 018048 232 GDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV---------------- 293 (361)
Q Consensus 232 GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~q~~-~~d~~~~A~a~Gi~~~~V---------------- 293 (361)
|||.+++|..+|++.+|++++|. +++||.+|...+..+...... ..++.++.+++||.++.|
T Consensus 232 GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g 311 (891)
T PRK09405 232 GDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSG 311 (891)
T ss_pred cchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCcc
Confidence 99999999999999999999998 999999998787766554222 468999999999999999
Q ss_pred ----------e-------------------------------------------CCCHHHHHHHHHHHHHHHHcCCCCEE
Q 018048 294 ----------D-------------------------------------------GMDVLKVREVAKEAIERARRGEGPTL 320 (361)
Q Consensus 294 ----------d-------------------------------------------g~D~~~v~~al~~Al~~ar~~~gP~l 320 (361)
| |+|+.+++++++.|.+ ..++|++
T Consensus 312 ~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~---~~~~Ptv 388 (891)
T PRK09405 312 KLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVE---HKGQPTV 388 (891)
T ss_pred HHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHh---CCCCCEE
Confidence 3 9999998887766543 2368999
Q ss_pred EEEEEecCCCC-CCCCCC------CCCCHHHHHhHHHh
Q 018048 321 VECETYRFRGH-SLADPD------ELRDPGEHLVLVLF 351 (361)
Q Consensus 321 Iev~t~R~~gH-s~~Dp~------~yR~~~e~~~~~~~ 351 (361)
|.++|.+.+|. +....+ .--++++++.+...
T Consensus 389 Iia~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~ 426 (891)
T PRK09405 389 ILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDR 426 (891)
T ss_pred EEEeceecCCCCcccCCCccccCCCCCCHHHHHHHHHH
Confidence 99999999887 433211 23467777666543
No 122
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.63 E-value=5e-16 Score=179.12 Aligned_cols=117 Identities=21% Similarity=0.170 Sum_probs=96.5
Q ss_pred cCCcccccc--ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhC--CCCeEEEEEcCCccc
Q 018048 191 LGGFAFIGE--GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW--KLPIVFVVENNLWAI 266 (361)
Q Consensus 191 ~~~~g~mG~--~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~--~LPvi~VV~NN~y~i 266 (361)
.++.|+||+ ++|.|+|+++| . +++|+|++|||+|+|. .+||.||+++ ++|+++||.||+ ++
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala-----------~-~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~-gg 819 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVG-----------C-NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNH-GG 819 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhc-----------C-CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCC-Cc
Confidence 457799999 59999999998 4 7899999999999998 9999999984 999999999998 33
Q ss_pred ccccc-------c-----c----cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 267 GMSHL-------R-----A----TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 267 s~~~~-------~-----q----~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
++... . + ..++||.++|++||+++.+|+..+ ++++|++++.+.++|+||||.|.|.
T Consensus 820 gi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~~~~------eL~~aL~~a~~~~~p~lIEV~t~~~ 891 (1655)
T PLN02980 820 AIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVGTKS------ELEDALFTSQVEQMDCVVEVESSID 891 (1655)
T ss_pred HhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecCCHH------HHHHHHHHhhccCCCEEEEEecChh
Confidence 33211 0 0 135799999999999999998765 4566777777789999999999864
No 123
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.62 E-value=2.1e-15 Score=150.40 Aligned_cols=232 Identities=16% Similarity=0.163 Sum_probs=148.6
Q ss_pred CCCcccccchhHHHHHHhhhcccccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHH
Q 018048 56 GNVRRRLPVVAVSEVVKEKKVKSISNLLIT-KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIK 134 (361)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~ 134 (361)
+..|-..+.-|..|+.+|++..+...++++ ..|+......+. +++. .+.. +.|-+--|+ .
T Consensus 296 ~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~--e~l~-------~~~~-------~~~~s~~w~---k 356 (571)
T KOG1185|consen 296 PPKWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLV--EELQ-------DQPW-------TWGPSTDWV---K 356 (571)
T ss_pred CCccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHH--HHhc-------CCCc-------ccCCchhHH---H
Confidence 346999999999999999999986677776 555544444333 2221 1110 112221132 1
Q ss_pred hcCC-----CcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCC---CcccCCCcc-----ccc--ccccc-c-cCCcccc
Q 018048 135 LLKK-----EDSVVSTYRDHVHALSKGVPARAVMSELFGKATG---CCRGQGGSM-----HMF--SKEHN-L-LGGFAFI 197 (361)
Q Consensus 135 ~l~~-----~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g---~~~gd~G~~-----h~~--~~~~~-~-~~~~g~m 197 (361)
-|++ ++-+.-.-+.+. ..+++..++..+...++. +...++++. ++. ..|++ . .+.+|+|
T Consensus 357 ~Lrek~~~ne~~~~~~~~~~~----~pLN~~~~~~~vre~L~~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTM 432 (571)
T KOG1185|consen 357 ELREKDKQNEAAVEEKAAKKS----TPLNYYQVLQTVRELLPNDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTM 432 (571)
T ss_pred HHHHHHHhhHHHHHHHhhccC----CCCcHHHHHHHHHHhcCCCCcEEEecCCcchhhhhhhccCCCcccccCCcccccc
Confidence 1211 111100001111 225666666666655551 334444431 111 11333 3 5889999
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC--ccccccccc---
Q 018048 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL--WAIGMSHLR--- 272 (361)
Q Consensus 198 G~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~--y~is~~~~~--- 272 (361)
|-|++.|+++|++ .|++.|+|+.||++|... ..|+.|+++|+|||++||.||+ |++.....+
T Consensus 433 GVG~Gfalaaa~~-----------~P~~~V~~veGDsaFGfS--aME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~ 499 (571)
T KOG1185|consen 433 GVGLGFALAAALA-----------APDRKVVCVEGDSAFGFS--AMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQIS 499 (571)
T ss_pred ccchhHHHHHHhh-----------CCCCeEEEEecCcccCcc--hhhHHHHHHhcCCeEEEEecCCcccccCcccHHHHh
Confidence 9999999999999 799999999999999988 8999999999999999998664 433221111
Q ss_pred -c-----------cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 273 -A-----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 273 -q-----------~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
| ..+.+|.+++++||..++.|+.. +++..+++++. +.+++|++|.|.+.+.
T Consensus 500 e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~--~el~~~l~~a~---q~~~~psvINVlI~p~ 562 (571)
T KOG1185|consen 500 EQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTV--EELLAALQQAC---QDTDKPSVINVLIGPT 562 (571)
T ss_pred hcCcccCCCcccccccccHHHHHHHcCCCceeeCCH--HHHHHHHHHHH---hcCCCCeEEEEEeccc
Confidence 1 13568999999999999999844 47665555543 4566999999987553
No 124
>PRK05261 putative phosphoketolase; Provisional
Probab=99.62 E-value=5.7e-15 Score=157.36 Aligned_cols=202 Identities=19% Similarity=0.241 Sum_probs=143.2
Q ss_pred eceeeecCCCchhHHHHHHHhcCCC--cEEEcccCCcchhh--c----CC--------CCHHHH-HHHHhcCcCCCcccC
Q 018048 115 MFGFVHLYNGQEAVSTGFIKLLKKE--DSVVSTYRDHVHAL--S----KG--------VPARAV-MSELFGKATGCCRGQ 177 (361)
Q Consensus 115 ~~g~~~~~~GqEa~~vg~~~~l~~~--D~v~~~yR~~~~~l--~----~g--------~~~~~~-~~el~~~~~g~~~gd 177 (361)
..|++.++.|+-.+.+.+-..++++ |.++-.--+|+... + .| ++.++. |..++.+.... |
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~p--g- 124 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFP--G- 124 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCC--C-
Confidence 4588888888888887777777765 53343333454331 1 23 222221 33333333211 1
Q ss_pred CCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcch---HHHHHHhhhCCCC
Q 018048 178 GGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKLP 254 (361)
Q Consensus 178 ~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~---~eeL~tA~~~~LP 254 (361)
+...|......++....|++|++++.|+|+|+. +++.+|+|++|||++++|.+ ++..+++..+++.
T Consensus 125 g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~-----------~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g 193 (785)
T PRK05261 125 GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDG 193 (785)
T ss_pred CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc-----------CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCC
Confidence 222354433335556789999999999999987 68899999999999999863 5555556666666
Q ss_pred -eEEEEEcCCccccccccccc-CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHc-----------C---CCC
Q 018048 255 -IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR-----------G---EGP 318 (361)
Q Consensus 255 -vi~VV~NN~y~is~~~~~q~-~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~-----------~---~gP 318 (361)
|+.|+.+|+|.|+.+...+. ...++.+++++||++.+.|||+|+.++++++++|++++.+ + .+|
T Consensus 194 ~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P 273 (785)
T PRK05261 194 AVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRP 273 (785)
T ss_pred CEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 78888899999999877553 4578999999999999999999999999987777765543 4 589
Q ss_pred E--EEEEEEecCCC
Q 018048 319 T--LVECETYRFRG 330 (361)
Q Consensus 319 ~--lIev~t~R~~g 330 (361)
. +|.++|....|
T Consensus 274 ~wp~Ii~rT~kG~g 287 (785)
T PRK05261 274 RWPMIVLRTPKGWT 287 (785)
T ss_pred CceEEEEECCccCC
Confidence 9 99999988665
No 125
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=8.3e-15 Score=150.81 Aligned_cols=155 Identities=23% Similarity=0.294 Sum_probs=121.4
Q ss_pred ccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcc
Q 018048 190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWA 265 (361)
Q Consensus 190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~ 265 (361)
+-..+|+||+|++.|+|.|+|.++....+.+++ -|..++|++|||.+++|..+|+..+|..++|. +|++..+|.+.
T Consensus 111 Ve~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~Is 190 (663)
T COG0021 111 VEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDIS 190 (663)
T ss_pred eEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCce
Confidence 345689999999999999999998876654323 35789999999999999999999999999998 88888899877
Q ss_pred cccccccccCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCC-CCCCCC---
Q 018048 266 IGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSL-ADPDEL--- 339 (361)
Q Consensus 266 is~~~~~q~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~-~Dp~~y--- 339 (361)
|....... ...|..++.+||||.++ .+||+|++++.+ |++.|++ .++|++|+|+|.-..|-.. .+...+
T Consensus 191 iDG~~~~~-f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~----Ai~~Ak~~~dkPtlI~~kTiIG~Gsp~kegt~~~HGa 265 (663)
T COG0021 191 IDGDTSLS-FTEDVAKRFEAYGWNVIRVIDGHDLEAIDK----AIEEAKASTDKPTLIIVKTIIGKGSPNKEGTHKVHGA 265 (663)
T ss_pred eccCcccc-cchhHHHHHHhcCCeEEEecCCCCHHHHHH----HHHHHHhcCCCCeEEEEEeeeecCCCCcCCCccccCC
Confidence 76544333 36789999999999999 788999887655 5555555 6799999999998877655 332221
Q ss_pred -CCHHHHHhHH
Q 018048 340 -RDPGEHLVLV 349 (361)
Q Consensus 340 -R~~~e~~~~~ 349 (361)
-.++|++...
T Consensus 266 pLg~~ev~~~k 276 (663)
T COG0021 266 PLGEEEVAAAK 276 (663)
T ss_pred CCCHHHHHHHH
Confidence 3556655443
No 126
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.60 E-value=2.5e-14 Score=146.52 Aligned_cols=206 Identities=20% Similarity=0.234 Sum_probs=146.6
Q ss_pred eceeeecCCCchhHHHHHHHhcC-CCc-EEEc-ccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCcccccccccccc
Q 018048 115 MFGFVHLYNGQEAVSTGFIKLLK-KED-SVVS-TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL 191 (361)
Q Consensus 115 ~~g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~-~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~ 191 (361)
-.|++.++.|--.+-+++...++ |.| +|+. .|....|.+..|.. +-|..++... |-.|...-...++.+
T Consensus 40 ~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTGR~--e~f~tlRq~~-----GlsGf~~r~ESe~D~- 111 (627)
T COG1154 40 TGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTGRR--EQFDTLRQKD-----GLSGFPKREESEHDW- 111 (627)
T ss_pred CCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhcCch--hhcchhhhcC-----CCCCCCCcccCCCcc-
Confidence 34888889998888888888887 555 6666 58888888877754 4444444331 112211111112222
Q ss_pred CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhh-hCCCCeEEEEEcCCccccccc
Q 018048 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSH 270 (361)
Q Consensus 192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~-~~~LPvi~VV~NN~y~is~~~ 270 (361)
-+.|+-+.++++|+|.|.|...+ +.++.||+++|||++.-|+.+|+||.|. ..+-|+|+|+.+|+.+|+-..
T Consensus 112 f~~GHsSTSiSaalG~A~A~~~~-------g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nv 184 (627)
T COG1154 112 FGVGHSSTSISAALGMAKARDLK-------GEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNV 184 (627)
T ss_pred cccCchHHHHHHHhhHHHHHHhc-------CCCCcEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCc
Confidence 24578889999999999997776 5789999999999999999999999998 556789999999987776533
Q ss_pred cc-----------c---c---C------------------Ccc-------hhhccccCCccEE-EEeCCCHHHHHHHHHH
Q 018048 271 LR-----------A---T---S------------------DPQ-------IYKKGPAFGMPGF-HVDGMDVLKVREVAKE 307 (361)
Q Consensus 271 ~~-----------q---~---~------------------~~d-------~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~ 307 (361)
.. . . . ..+ ...+.+.+|+.|+ .|||+|++++..
T Consensus 185 Gal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~---- 260 (627)
T COG1154 185 GALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIP---- 260 (627)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHH----
Confidence 10 0 0 0 000 0125667899999 799999887654
Q ss_pred HHHHHHcCCCCEEEEEEEecCCCCCCC--CCCCC
Q 018048 308 AIERARRGEGPTLVECETYRFRGHSLA--DPDEL 339 (361)
Q Consensus 308 Al~~ar~~~gP~lIev~t~R~~gHs~~--Dp~~y 339 (361)
+++.+++.++|+||+|.|.+..|-..+ ||..|
T Consensus 261 ~Lk~~kd~~gPvllHv~T~KGKGY~pAE~d~~~~ 294 (627)
T COG1154 261 TLKNAKDLKGPVLLHVVTKKGKGYKPAEEDPIKY 294 (627)
T ss_pred HHHHHhcCCCCEEEEEEecCCCCCChhhcChhhc
Confidence 566678899999999999998887655 44444
No 127
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.59 E-value=9.1e-15 Score=137.43 Aligned_cols=216 Identities=21% Similarity=0.227 Sum_probs=132.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC-CCc-EEEc-ccCCcchhhcCCCC
Q 018048 82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KED-SVVS-TYRDHVHALSKGVP 158 (361)
Q Consensus 82 ~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~-~yR~~~~~l~~g~~ 158 (361)
-.++.+|+.+|-..+ | +++.. .-.+..|++.++.|--.+.+++...++ |.| +|+. .|....+.+..|-.
T Consensus 11 k~ls~~eL~~La~ei---R---~~ii~--~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR~ 82 (270)
T PF13292_consen 11 KKLSIEELEQLAQEI---R---EFIIE--TVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGRR 82 (270)
T ss_dssp TTS-GGGHHHHHHHH---H---HHHHH--HCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTTC
T ss_pred HcCCHHHHHHHHHHH---H---HHHHH--HHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCcH
Confidence 455666666655432 2 22222 233445888888898888888988888 666 5565 47777777665532
Q ss_pred HHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccC
Q 018048 159 ARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN 238 (361)
Q Consensus 159 ~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~ 238 (361)
+-|..++.. .|-+|.......++. .-+.|+-+.++++|+|.|.|..++ +.+..||+++|||++.-
T Consensus 83 --~~f~TlRq~-----gGlSGF~~r~ES~~D-~f~~GHsstsiSaa~Gma~ar~l~-------~~~~~vVaVIGDGalt~ 147 (270)
T PF13292_consen 83 --DRFHTLRQY-----GGLSGFPKRSESEYD-AFGAGHSSTSISAALGMAVARDLK-------GEDRKVVAVIGDGALTG 147 (270)
T ss_dssp --CCGGGTTST-----TS--SS--TTT-TT---S--SSSS-HHHHHHHHHHHHHHH-------TS---EEEEEETTGGGS
T ss_pred --HHhchhhhc-----CCcCCCCCcccCCCC-cccCCccHhHHHHHHHHHHHHHhc-------CCCCcEEEEECCcchhH
Confidence 112222111 112222211111222 234689999999999999998777 56889999999999999
Q ss_pred cchHHHHHHhhhCCCCeEEEEEcCCccccccccc--------c--------c------------------------CCcc
Q 018048 239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------A--------T------------------------SDPQ 278 (361)
Q Consensus 239 g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~--------q--------~------------------------~~~d 278 (361)
|+.+|+||.|...+-++++|+.+|+..|+-.... . . ...
T Consensus 148 Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~- 226 (270)
T PF13292_consen 148 GMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGF- 226 (270)
T ss_dssp HHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhh-
Confidence 9999999999999999999999998776542110 0 0 000
Q ss_pred hhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 279 IYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 279 ~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
...+.+.+|+.|+ .|||+|+.++. ++++.+++-+||+||+|.|
T Consensus 227 ~~~lFe~LG~~Y~GPiDGHdl~~Li----~~l~~~K~~~gPvllHV~T 270 (270)
T PF13292_consen 227 SPNLFEELGFDYIGPIDGHDLEELI----EVLENAKDIDGPVLLHVIT 270 (270)
T ss_dssp --CCCHHCT-EEEEEEETT-HHHHH----HHHHHHCCSSSEEEEEEE-
T ss_pred hHHHHHHcCCeEEeccCCCCHHHHH----HHHHHHhcCCCCEEEEEeC
Confidence 1145667799999 89999988764 4666677889999999986
No 128
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.52 E-value=4.5e-14 Score=142.33 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=106.4
Q ss_pred CHHHHHHHHhcCcC--CCcccCCCcccccccc------ccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceE
Q 018048 158 PARAVMSELFGKAT--GCCRGQGGSMHMFSKE------HNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 227 (361)
Q Consensus 158 ~~~~~~~el~~~~~--g~~~gd~G~~h~~~~~------~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~V 227 (361)
+-+.++.++..-.. +++..+.|...+...+ ..+ .+-+|++||.+|+|+|+++| .++|+|
T Consensus 364 tq~~~w~~~~~fl~p~dviiaetGtS~FG~~~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A-----------~~drR~ 432 (557)
T COG3961 364 TQEWLWNTVQNFLKPGDVIIAETGTSFFGALDIRLPKGATFISQPLWGSIGYTLPAALGAALA-----------APDRRV 432 (557)
T ss_pred cHHHHHHHHHhhCCCCCEEEEccccccccceeeecCCCCeEEcccchhhcccccHhhhhhhhc-----------CCCccE
Confidence 34555666555443 3555666665444322 222 36689999999999999999 789999
Q ss_pred EEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCccccccccc------ccCCcchhhccccCCccEEEE----eCC
Q 018048 228 LAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLR------ATSDPQIYKKGPAFGMPGFHV----DGM 296 (361)
Q Consensus 228 v~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~------q~~~~d~~~~A~a~Gi~~~~V----dg~ 296 (361)
|.|+||||+++. .||+.+..+|+|| +|||+.|+||.|....+. .....|+.++.++||+..... ...
T Consensus 433 IL~iGDGs~QlT--vQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~ 510 (557)
T COG3961 433 ILFIGDGSLQLT--VQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATTG 510 (557)
T ss_pred EEEEcCchhhhh--HHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchhhhhhhcCCCCceEEEeecCh
Confidence 999999999988 9999999999998 555555556765432222 123578999999999866543 333
Q ss_pred CHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecC
Q 018048 297 DVLKVREVAKEAIERARR-GEGPTLVECETYRF 328 (361)
Q Consensus 297 D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~ 328 (361)
+ .++.+++.+.+ .+++.+|||++.+.
T Consensus 511 ~------~l~~~~~~~~~~~~~i~lIEv~lp~~ 537 (557)
T COG3961 511 E------ELALALDVAFANNDRIRLIEVMLPVL 537 (557)
T ss_pred H------HHHHHHHHHhcCCCceEEEEEecCcc
Confidence 3 45566666655 45899999988653
No 129
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.47 E-value=3.1e-13 Score=134.40 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=100.0
Q ss_pred CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc
Q 018048 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 271 (361)
Q Consensus 192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~ 271 (361)
.++++|||.+..++|+++| .|++.|++++||||++|- +.||.|+..++..|++++.+|. +++-+..
T Consensus 441 YgfSCMGYEiaG~lG~K~a-----------~pdreV~vmVGDGSymMl--nSEL~Tsv~~g~Ki~Vvl~DN~-GyGCIn~ 506 (617)
T COG3962 441 YGFSCMGYEIAGGLGAKAA-----------EPDREVYVMVGDGSYMML--NSELATSVMLGKKIIVVLLDNR-GYGCINR 506 (617)
T ss_pred ecccccccccccccccccC-----------CCCCeEEEEEcccchhhh--hHHHHHHHHcCCeEEEEEECCC-Ccchhhh
Confidence 5689999999999999988 789999999999999987 9999999999999999999886 5444332
Q ss_pred cc--------------------cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048 272 RA--------------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF 328 (361)
Q Consensus 272 ~q--------------------~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~ 328 (361)
.| ....||++.|++||+..++|... . .|+.|++.+++..+++||++.|...
T Consensus 507 LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~~i--~----eL~aAL~~Ak~~~~ttvi~I~t~P~ 577 (617)
T COG3962 507 LQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVGTI--E----ELEAALADAKASDRTTVIVIDTDPK 577 (617)
T ss_pred hhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecCCH--H----HHHHHHHHHHhCCCCEEEEEecCCc
Confidence 21 34679999999999999999743 3 4677888999999999999999764
No 130
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=4.2e-13 Score=137.02 Aligned_cols=132 Identities=27% Similarity=0.380 Sum_probs=106.6
Q ss_pred cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccc
Q 018048 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMS 269 (361)
Q Consensus 191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~ 269 (361)
.-++|++|++++.|+|+|++.++..+ .+..|+|++|||..++|..+|++++|..++|. +|+|..||+.+++..
T Consensus 114 ~v~TG~lgQgis~a~GmA~~~k~~~k------~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~ 187 (632)
T KOG0523|consen 114 EVATGPLGQGISNAVGMAYAGKHLGK------ASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGA 187 (632)
T ss_pred eeccCCccchHHHHHHHHHHHHhhcc------ccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCC
Confidence 35679999999999999999888742 37889999999999999999999999999999 667777777666654
Q ss_pred cccccCCcchhh-ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048 270 HLRATSDPQIYK-KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (361)
Q Consensus 270 ~~~q~~~~d~~~-~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (361)
+... ...|..+ +.++|||....|++.|++++..++.+|. ...++|+.|-+.|...+|-.
T Consensus 188 t~~~-~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~~t~~g~G~~ 247 (632)
T KOG0523|consen 188 TSLG-FDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKATTFIGRGSP 247 (632)
T ss_pred Cccc-ccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hccCCceeeeeeeeeecCcc
Confidence 4433 3456666 9999999999999999777665555543 23578999999998876644
No 131
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.45 E-value=2.2e-12 Score=136.53 Aligned_cols=195 Identities=14% Similarity=0.137 Sum_probs=139.6
Q ss_pred eceeeecCCCchhHHHHHHHhcC-CCc-EEEc-ccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCcccccccccccc
Q 018048 115 MFGFVHLYNGQEAVSTGFIKLLK-KED-SVVS-TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL 191 (361)
Q Consensus 115 ~~g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~-~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~ 191 (361)
..|++.++.|--.+-+++...++ |.| .|+. .|....|.+..|-. ++ |. . .+.. |-.|.......++..
T Consensus 115 ~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~-~~-f~-~-Rq~~----GlsGf~~r~ES~~D~- 185 (701)
T PLN02225 115 TQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRW-SA-IP-S-RQKN----GISGVTSQLESEYDS- 185 (701)
T ss_pred cCCCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCCh-hh-cC-c-cccC----CcCCCCCCCCCCCCC-
Confidence 35888889999888889998888 566 5666 58888888877753 22 22 1 2221 222322211112222
Q ss_pred CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccc--
Q 018048 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS-- 269 (361)
Q Consensus 192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~-- 269 (361)
-+.|+-+.++++|+|.|.|..++ +.++.||+++|||++.-|+.+|+||.|...+-++|+|+.+|+.+|+-.
T Consensus 186 f~~GHssTSiSaalG~a~ardl~-------g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~ 258 (701)
T PLN02225 186 FGTGHGCNSISAGLGLAVARDIK-------GKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNME 258 (701)
T ss_pred CCCChHHHHHHHHHHHHHHHHhc-------CCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCC
Confidence 34588899999999999998776 467889999999999999999999999999999999999999887665
Q ss_pred ------ccc--------c------------------cC------------------CcchhhccccCCccEE-EEeCCCH
Q 018048 270 ------HLR--------A------------------TS------------------DPQIYKKGPAFGMPGF-HVDGMDV 298 (361)
Q Consensus 270 ------~~~--------q------------------~~------------------~~d~~~~A~a~Gi~~~-~Vdg~D~ 298 (361)
... + .+ .|.-..+.+.+|+.|+ .|||+|+
T Consensus 259 ~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi 338 (701)
T PLN02225 259 EGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNI 338 (701)
T ss_pred CccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCH
Confidence 100 0 00 0000135578899999 8999999
Q ss_pred HHHHHHHHHHHHHHHcCC--CCEEEEEEEecCC
Q 018048 299 LKVREVAKEAIERARRGE--GPTLVECETYRFR 329 (361)
Q Consensus 299 ~~v~~al~~Al~~ar~~~--gP~lIev~t~R~~ 329 (361)
.++..+ ++.+++.+ +|+||+|+|.+..
T Consensus 339 ~~Li~~----l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 339 EDLVCV----LREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred HHHHHH----HHHHHcCCCCCCEEEEEEecCCC
Confidence 887654 44555555 9999999998765
No 132
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.32 E-value=2.8e-12 Score=123.45 Aligned_cols=162 Identities=22% Similarity=0.251 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHhcCcC-C-CcccCCCcc--------ccccccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048 156 GVPARAVMSELFGKAT-G-CCRGQGGSM--------HMFSKEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC 223 (361)
Q Consensus 156 g~~~~~~~~el~~~~~-g-~~~gd~G~~--------h~~~~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~ 223 (361)
.+.|+++..|+..... + +.....|-. |.+ +++++ .+..|++||.+|+|+|+..| .|
T Consensus 369 p~kpqrvyeemn~~fgrd~~yvstiglsqia~aqflhv~-~pr~wincgqagplgwtipaalgv~~a-----------dp 436 (592)
T COG3960 369 PVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVF-KPRHWINCGQAGPLGWTIPAALGVCAA-----------DP 436 (592)
T ss_pred CCCHHHHHHHHHhhcCCceeEEEeccHHHHhhhhhhhhc-CCcceeecCccCCcccccchhhceeec-----------CC
Confidence 4678888777655443 1 111112222 333 34444 47789999999999999999 89
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc----------------------CCcchhh
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT----------------------SDPQIYK 281 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~----------------------~~~d~~~ 281 (361)
++.+|++.||=.|+.- .|||...+++++|-|+|+.||.| ++.+++.|+ ...|-.+
T Consensus 437 ~r~vvalsgdydfqfm--ieelavgaq~k~pyihv~vnnay-lglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~ 513 (592)
T COG3960 437 KRNVVAISGDYDFQFL--IEELAVGAQFKIPYIHVLVNNAY-LGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVK 513 (592)
T ss_pred CCceEEeecCchHHHH--HHHHhhhhcccCceEEEEecchH-HHHHHHHHhcCCccceeeehhhccCCccccccCcccee
Confidence 9999999999999965 99999999999999999999986 355554332 2357788
Q ss_pred ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048 282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (361)
.++++|++.++|-.++ ++..++.+|-.-..+..-|+++|++..|....++.
T Consensus 514 v~eglgckairv~~p~--e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 514 VAEGLGCKAIRVFKPE--DIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred ehhccCceeEEecChH--HhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 9999999999997655 66667777766666788999999999999888776
No 133
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.28 E-value=8.9e-11 Score=113.52 Aligned_cols=126 Identities=19% Similarity=0.116 Sum_probs=98.2
Q ss_pred ccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCC-cc
Q 018048 188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WA 265 (361)
Q Consensus 188 ~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~-y~ 265 (361)
.+.....+.+|.+.++|.|.+.|.+.. +++..||++.|||++. .| .+.|.-|...+.++++||.||+ |+
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~-------~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y~ 132 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKAL-------GKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAYM 132 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHh-------cCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCcccc
Confidence 344566789999999999999997664 3567899999999987 77 7999999999999999999998 54
Q ss_pred ccccccc---------------------ccCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048 266 IGMSHLR---------------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 266 is~~~~~---------------------q~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev 323 (361)
.+..+.. .....|+.+++.++|++++ +++-.++.++.+++++ |.+.+||.+|++
T Consensus 133 nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~----A~~~~Gps~I~v 208 (299)
T PRK11865 133 NTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKK----AKEVEGPAYIQV 208 (299)
T ss_pred CCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHH----HHhCCCCEEEEE
Confidence 3221111 1124678899999999999 6677788877655555 456789999999
Q ss_pred EEe
Q 018048 324 ETY 326 (361)
Q Consensus 324 ~t~ 326 (361)
...
T Consensus 209 ~sP 211 (299)
T PRK11865 209 LQP 211 (299)
T ss_pred ECC
Confidence 874
No 134
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.09 E-value=2.5e-10 Score=115.24 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=86.0
Q ss_pred CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcC-Cccccccc
Q 018048 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH 270 (361)
Q Consensus 192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN-~y~is~~~ 270 (361)
..+|++|+.+|+++|+++| .++++||.|+|||+|++. .|++.|+.+|+||.++++.|| +|.+....
T Consensus 412 ~~wgsIG~svga~lG~a~a-----------~~e~rvilfiGDGs~qlT--vQeiStmir~gl~~~if~~NN~GYTIE~~I 478 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQA-----------APEKRVILFIGDGSFQLT--VQEISTMIRWGLKPIIFLINNGGYTIEVEI 478 (561)
T ss_pred EEEeeccccchhhhhhhhc-----------cCCceEEEEecCccceee--HHHHHHHHhcCCCcEEEEEeCCceEEEEee
Confidence 4578999999999999999 788999999999999988 999999999999966555555 56654433
Q ss_pred cc----ccCCcchhhccccCCccE-----EEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 271 LR----ATSDPQIYKKGPAFGMPG-----FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 271 ~~----q~~~~d~~~~A~a~Gi~~-----~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
+. ...+.|+.++.++||..- .+|-... +..++++.+.- .+.+++.+|||...
T Consensus 479 H~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~--e~~~~~~~~~~--~~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 479 HDGPYNDIQNWDYTALLEAFGAGEGKYETHKVRTEE--ELVEAIKDATF--EKNDKIRLIEVILP 539 (561)
T ss_pred cCCCccccccchHHHHHHhhcCccceeEEeeeccch--HHHHHHhhhhh--cccCceEEEEEecC
Confidence 32 123578999999998655 2333222 33333343331 24678999999763
No 135
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=98.93 E-value=1.5e-07 Score=98.05 Aligned_cols=137 Identities=23% Similarity=0.151 Sum_probs=107.2
Q ss_pred cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccc
Q 018048 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMS 269 (361)
Q Consensus 191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~ 269 (361)
.-.+.+||-|.-.||=.|.-.||...++-...+++.|+||.|||.+.++...+++..|++++|. ++|||..|...+..+
T Consensus 188 qFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgp 267 (887)
T COG2609 188 QFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGP 267 (887)
T ss_pred ccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCc
Confidence 3456899999999999999999987665433788999999999999999999999999999998 999999887677665
Q ss_pred ccccc-CCcchhhccccCCccEEEE-------------------------------------------------------
Q 018048 270 HLRAT-SDPQIYKKGPAFGMPGFHV------------------------------------------------------- 293 (361)
Q Consensus 270 ~~~q~-~~~d~~~~A~a~Gi~~~~V------------------------------------------------------- 293 (361)
..... -...+..+.++.||.+++|
T Consensus 268 VrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aL 347 (887)
T COG2609 268 VRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAAL 347 (887)
T ss_pred ccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHH
Confidence 43321 1234666677777777766
Q ss_pred --------------eCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEecCCCC
Q 018048 294 --------------DGMDVLKVREVAKEAIERARRGE-GPTLVECETYRFRGH 331 (361)
Q Consensus 294 --------------dg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~R~~gH 331 (361)
-|+|+..++++++.| +..+ +|++|-++|.+.+|-
T Consensus 348 Va~~tD~diw~L~rGGHD~~ki~aA~~~A----~~~kg~PtvilA~TIKGygl 396 (887)
T COG2609 348 VADMTDDDIWALNRGGHDPEKVYAAFKKA----QEHKGRPTVILAKTIKGYGL 396 (887)
T ss_pred HHhccHHHHHHHhcCCCCHHHHHHHHHHH----hcCCCCceEEEEeeeccccC
Confidence 377888887766655 4444 899999999876654
No 136
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.86 E-value=2.9e-08 Score=96.17 Aligned_cols=117 Identities=20% Similarity=0.177 Sum_probs=91.9
Q ss_pred CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCC-cccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccc
Q 018048 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS 269 (361)
Q Consensus 192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDG-s~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~ 269 (361)
...+.-|-+++.|.|.++| .++..||++.||| ++..| .+.|.-+.+.|..|++||.||+ |+.+..
T Consensus 67 ~~hs~~gra~a~atGik~A-----------~~~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgnTgg 133 (294)
T COG1013 67 WVHSLHGRAAAVATGIKLA-----------NPALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNTGG 133 (294)
T ss_pred ceeeccCcchhhHHHHHHh-----------ccCCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecccCCC
Confidence 3456778899999999999 6788999999999 55599 8999999999999999999998 655432
Q ss_pred ccccc-----------------CCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 270 HLRAT-----------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 270 ~~~q~-----------------~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
+..-+ ...|+..+|.++|.+++ ++.-.++.++.+.++ +|.+.+||.+|++.+
T Consensus 134 Q~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~----kA~~~~Gps~I~v~s 203 (294)
T COG1013 134 QASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIK----KAAEHKGPSFIDVLS 203 (294)
T ss_pred ccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHH----HHHhccCCeEEEEec
Confidence 21111 22388889999999998 777777777655444 455677999999976
No 137
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.74 E-value=8e-09 Score=101.08 Aligned_cols=104 Identities=21% Similarity=0.298 Sum_probs=72.4
Q ss_pred ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhh---hC-CC----CeEEEEEcCCcc
Q 018048 194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA---LW-KL----PIVFVVENNLWA 265 (361)
Q Consensus 194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~---~~-~L----Pvi~VV~NN~y~ 265 (361)
-|-+||++..|.|+++- +||.+|+|++|||.+.+|. +.++- .+ +- -|+=|+.=|+|.
T Consensus 139 GGELGYaLshA~GA~~D-----------nPdliv~~vvGDGEaETGp----lA~sWh~~kflnP~~dGaVLPILhLNG~K 203 (379)
T PF09364_consen 139 GGELGYALSHAFGAVFD-----------NPDLIVACVVGDGEAETGP----LAASWHSNKFLNPATDGAVLPILHLNGYK 203 (379)
T ss_dssp -SSTS-HHHHHHHHHTT------------TT-EEEEEEETTGGGSHH----HHHHGGGGGSS-TTTS-EEEEEEEE-SBS
T ss_pred CcchhhHHHHHhhcccC-----------CCCeEEEEEecCCcccCCc----ccccccccceeCcccCceeeceEEecCcc
Confidence 48999999999999997 7999999999999999984 33332 22 21 155555669999
Q ss_pred cccccccc-cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHH
Q 018048 266 IGMSHLRA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA 312 (361)
Q Consensus 266 is~~~~~q-~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~a 312 (361)
|+-++-.. ....++.++.++||+.-+.|++.|+.++..++..+++++
T Consensus 204 I~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a 251 (379)
T PF09364_consen 204 ISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWA 251 (379)
T ss_dssp SSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHH
T ss_pred ccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 98776433 245679999999999999999999999988776665543
No 138
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.28 E-value=3.2e-06 Score=87.94 Aligned_cols=157 Identities=26% Similarity=0.284 Sum_probs=104.7
Q ss_pred chhhcCCCCHHHHHHHHhcCcC---CCcccCCCcccccc-ccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048 150 VHALSKGVPARAVMSELFGKAT---GCCRGQGGSMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH 225 (361)
Q Consensus 150 ~~~l~~g~~~~~~~~el~~~~~---g~~~gd~G~~h~~~-~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~ 225 (361)
...+.-|.+....+..+..... ....+|-|-+.+.- ++.+....+-.||.++..|-|+.++ ..+
T Consensus 379 pP~lC~GCPHr~sf~~~k~~~~~~~~~~~~DIGCytlg~~~P~~~~d~t~~mGssig~a~g~~~~------------~~k 446 (640)
T COG4231 379 PPALCPGCPHRPSFYALKKAAAELGGHPSGDIGCYTLGILPPLNTVDTTTMMGSSIGIAGGLSFA------------STK 446 (640)
T ss_pred CCcCCCCCCCchhhHHHHHHHHhhCCCCCCCcceeecccCCCcchhhhhhhccchhhhccccccc------------cCC
Confidence 3445556665555544433222 11245666433332 2344445566889999999999987 348
Q ss_pred eEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-c----------cCCcchhhccccCCccEEE-
Q 018048 226 VTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-A----------TSDPQIYKKGPAFGMPGFH- 292 (361)
Q Consensus 226 ~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-q----------~~~~d~~~~A~a~Gi~~~~- 292 (361)
++|+++|||+|. .| ..+|..|+-.+.+++++|.+|.+.--+-.|. - ....++.++.++.|+..+.
T Consensus 447 ~~va~iGDsTF~HsG--i~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~ 524 (640)
T COG4231 447 KIVAVIGDSTFFHSG--ILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVET 524 (640)
T ss_pred ceEEEeccccccccC--cHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCceeeec
Confidence 899999999999 56 7789999999999999999998532111110 0 1235788899999999885
Q ss_pred EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Q 018048 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECE 324 (361)
Q Consensus 293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~ 324 (361)
||-.|+.++ .++++++++..||.+|-.+
T Consensus 525 vdp~~~~~~----~~~~keale~~gpsViiak 552 (640)
T COG4231 525 VDPYDVKEL----SEAIKEALEVPGPSVIIAK 552 (640)
T ss_pred cCCcchHHH----HHHHHHHhcCCCceEEEEc
Confidence 555666655 4556666778899988543
No 139
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=98.13 E-value=4.1e-06 Score=86.14 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=82.7
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcC-Cccc-ccccccc--
Q 018048 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAI-GMSHLRA-- 273 (361)
Q Consensus 198 G~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN-~y~i-s~~~~~q-- 273 (361)
-.-++-|+|++.| ..+++|.++||=||-.- ...|........|+++||.|| |-+| ++-.+.+
T Consensus 425 DG~vSTA~Gi~~a------------~~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~ 490 (566)
T COG1165 425 DGTVSTALGIARA------------TQKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSE 490 (566)
T ss_pred chhHHHHhhhhhh------------cCCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCc
Confidence 3456889999998 45679999999999854 456777888888966666655 4333 2211111
Q ss_pred ------c---CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048 274 ------T---SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (361)
Q Consensus 274 ------~---~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g 330 (361)
. ...||+..|+.||+.+.++++.+ .++++++.+....|-.|||++|.|..+
T Consensus 491 ~~fe~~F~tPh~ldF~~la~~y~l~y~~~~s~~------~l~~~~~~~~~~~g~~viEvkt~r~~~ 550 (566)
T COG1165 491 PVFERLFGTPHGLDFAHLAATYGLEYHRPQSWD------ELGEALDQAWRRSGTTVIEVKTDRSDG 550 (566)
T ss_pred chHHHhcCCCCCCCHHHHHHHhCccccccCcHH------HHHHHHhhhccCCCcEEEEEecChhHH
Confidence 1 24689999999999999998776 567777777767789999999988543
No 140
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.09 E-value=1.6e-05 Score=78.77 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=72.9
Q ss_pred CCceEEEEECCCcc-cCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc----------------ccCCcchhhccc
Q 018048 223 CDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------------ATSDPQIYKKGP 284 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~----------------q~~~~d~~~~A~ 284 (361)
++..||++.|||.. ..| .+.|.-+...+.+|++||.||. |+.+..+.. .....|+..++.
T Consensus 150 ~~~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~ 227 (365)
T cd03377 150 VKKSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAM 227 (365)
T ss_pred cccceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHH
Confidence 44689999999955 488 8899999999999999999998 654321110 112358888999
Q ss_pred cCCccEE-EEeC-CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 285 AFGMPGF-HVDG-MDVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 285 a~Gi~~~-~Vdg-~D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
++|.+++ ++.- .++.++.+.++ +|.+.+||.+|++.+.
T Consensus 228 a~g~~YVA~~s~~~~~~~~~~~i~----eA~~~~Gps~I~v~sP 267 (365)
T cd03377 228 SYGNVYVAQIALGANDNQTLKAFR----EAEAYDGPSLIIAYSP 267 (365)
T ss_pred HcCCCEEEEEecccCHHHHHHHHH----HHhcCCCCEEEEEEcc
Confidence 9999998 5544 47777655554 4556799999999874
No 141
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=1.7e-05 Score=83.27 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=106.4
Q ss_pred eceeeecCCCchhHHHHHHHhcCCCc--EEEcccCCcchhh-c-----CC-CC---H-----HHHHHHHhcCcCCCcccC
Q 018048 115 MFGFVHLYNGQEAVSTGFIKLLKKED--SVVSTYRDHVHAL-S-----KG-VP---A-----RAVMSELFGKATGCCRGQ 177 (361)
Q Consensus 115 ~~g~~~~~~GqEa~~vg~~~~l~~~D--~v~~~yR~~~~~l-~-----~g-~~---~-----~~~~~el~~~~~g~~~gd 177 (361)
..|++.++.|+--+.+.....++++| +++-.-.+|+... . .| .+ | ++=|..|+.+.... |.
T Consensus 59 ~lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~P--gG 136 (793)
T COG3957 59 LLGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFP--GG 136 (793)
T ss_pred hcccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCC--CC
Confidence 34788888888877777766666655 3332333444321 0 11 00 0 00122232222111 11
Q ss_pred CCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhh----CCC
Q 018048 178 GGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAAL----WKL 253 (361)
Q Consensus 178 ~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~----~~L 253 (361)
-+ .|+...--+...--|.+||++..|.|+++- .|+.++.|++|||....|. +.|... ++.
T Consensus 137 i~-SH~~petPGsIhEGGeLGy~l~ha~gAa~d-----------~Pdli~~~vvGDGeaetgp----latsWhs~kf~np 200 (793)
T COG3957 137 IG-SHVAPETPGSIHEGGELGYALSHAYGAAFD-----------NPDLIVACVVGDGEAETGP----LATSWHSNKFLNP 200 (793)
T ss_pred cc-cccCCCCCCccCcCcchhHHHHHHHHhhcC-----------CCCcEEEEEecccccccCc----cccccccccccCc
Confidence 22 244332222333448999999999999997 8999999999999877774 333322 222
Q ss_pred C----eEEEEEcCCccccccccccc-CCcchhhccccCCccEEEEeCCCHHHHHHHHHH
Q 018048 254 P----IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKE 307 (361)
Q Consensus 254 P----vi~VV~NN~y~is~~~~~q~-~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~ 307 (361)
+ |+=|+.=|+|.|+-++...+ +..++.++.++||+.-+.|+|.|+.++.+....
T Consensus 201 ~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mAa 259 (793)
T COG3957 201 ARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAA 259 (793)
T ss_pred cccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhHHH
Confidence 2 55556669999977654433 456799999999999999999898885544433
No 142
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.94 E-value=3.7e-05 Score=86.26 Aligned_cols=155 Identities=17% Similarity=0.093 Sum_probs=102.0
Q ss_pred chhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEE
Q 018048 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA 229 (361)
Q Consensus 150 ~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~ 229 (361)
...+..|++....+. +. ......+|.|-+.+...+.+...++..||.....++|.+.+ ..++.||+
T Consensus 426 ~P~~C~GCPH~~s~k-~~--~~~~~~gdIGC~tl~~~~~~~~~~~~~MG~~g~~~~G~a~~-----------~~~~~v~a 491 (1159)
T PRK13030 426 TPYFCSGCPHNTSTK-VP--EGSIAQAGIGCHFMASWMDRDTTGLTQMGGEGVDWIGHAPF-----------TETKHVFQ 491 (1159)
T ss_pred CCCcCCCCCCchhhc-cC--CCCEeecCcCHHHHhhccccccceeeccCccchhhceeccc-----------cCCCCEEE
Confidence 344556776655541 11 11234566665444443334455678999999999999987 34567999
Q ss_pred EECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc--CCcchhh---ccccCCccEEEEeCCCHHH---
Q 018048 230 FFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT--SDPQIYK---KGPAFGMPGFHVDGMDVLK--- 300 (361)
Q Consensus 230 ~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~--~~~d~~~---~A~a~Gi~~~~Vdg~D~~~--- 300 (361)
++|||.|. .| +-+|--|+..+.+++++|.+|.. ..| +..|. ...++.+ ..++.|++.+.|-..|+.+
T Consensus 492 ~iGDgTf~HSG--~~al~~AV~~~~nit~~IL~N~~-tAM-TGgQp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~ 567 (1159)
T PRK13030 492 NLGDGTYFHSG--SLAIRQAVAAGANITYKILYNDA-VAM-TGGQPVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRG 567 (1159)
T ss_pred EeccchhhhcC--HHHHHHHHhcCCCeEEEEEeCCc-ccc-cCCCCCCCCCCHHHHHHHHHhCCCcEEEEecCChhhccc
Confidence 99999999 66 77999999999999999999983 233 22222 2344555 7779999999876555554
Q ss_pred --HH--------HHHHHHHHHHH-cCCCCEEEEE
Q 018048 301 --VR--------EVAKEAIERAR-RGEGPTLVEC 323 (361)
Q Consensus 301 --v~--------~al~~Al~~ar-~~~gP~lIev 323 (361)
+. +.+. ++++++ +.+||++|-.
T Consensus 568 ~~~~~~~~v~~r~~l~-~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 568 HHLPAGVTVHHRDELD-AVQRELRETPGVTVLIY 600 (1159)
T ss_pred cccCCCcccccHHHHH-HHHHHHhcCCCcEEEEE
Confidence 22 2233 333333 6778888754
No 143
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.84 E-value=8e-05 Score=83.54 Aligned_cols=134 Identities=22% Similarity=0.146 Sum_probs=94.6
Q ss_pred cccCCCccccccc-cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhC
Q 018048 174 CRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALW 251 (361)
Q Consensus 174 ~~gd~G~~h~~~~-~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~ 251 (361)
..+|.|-+.+... +.+. .++..||.....++|.+.+ ..++.||+++|||.|. .| +-+|..|+..
T Consensus 460 ~~~dIGChtl~~~~p~~~-~~~~~MG~eg~~~~G~a~f-----------~~~~hv~a~iGDgTffHSG--~~al~~AV~~ 525 (1165)
T PRK09193 460 ALAGIGCHYMATWMDRNT-STFTQMGGEGVPWIGQAPF-----------TDEKHVFQNLGDGTYFHSG--LLAIRAAVAA 525 (1165)
T ss_pred EecCcChhhhccCCCCCC-CeeeccCCcchhhceeccc-----------cCCCcEEEEeccccchhcC--HHHHHHHHhc
Confidence 4455564444332 3333 5778999999999998876 3457799999999999 66 8889999999
Q ss_pred CCCeEEEEEcCCcccccccccc-----cCCcchhhccccCCccEEEEeCCCHHHHHHH--------------HHHHHHHH
Q 018048 252 KLPIVFVVENNLWAIGMSHLRA-----TSDPQIYKKGPAFGMPGFHVDGMDVLKVREV--------------AKEAIERA 312 (361)
Q Consensus 252 ~LPvi~VV~NN~y~is~~~~~q-----~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a--------------l~~Al~~a 312 (361)
+.+|+++|..|. ...|. ..| ...+++....++.|++-+.|-..|+.+.... ++...+..
T Consensus 526 ~~nit~~IL~N~-~vAMT-GgQ~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l 603 (1165)
T PRK09193 526 GVNITYKILYND-AVAMT-GGQPVDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL 603 (1165)
T ss_pred CCCeEEEEEeCC-ccccc-CCCCCCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH
Confidence 999999999998 32332 122 2457888999999999998866666655322 33332233
Q ss_pred HcCCCCEEEEE
Q 018048 313 RRGEGPTLVEC 323 (361)
Q Consensus 313 r~~~gP~lIev 323 (361)
++.+|+++|-.
T Consensus 604 r~~~GvsViI~ 614 (1165)
T PRK09193 604 REIPGVTVLIY 614 (1165)
T ss_pred hcCCCcEEEEE
Confidence 36788888754
No 144
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.68 E-value=0.00016 Score=81.12 Aligned_cols=135 Identities=19% Similarity=0.119 Sum_probs=91.0
Q ss_pred cccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCC
Q 018048 174 CRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWK 252 (361)
Q Consensus 174 ~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~ 252 (361)
..+|.|-+.+.....+...++..||.....++|.+-+ ..++.||+++|||.|. .| +-+|..|+..+
T Consensus 474 ~~~dIGChtl~~~~~~~~~~~~~MGgeg~~~~G~a~f-----------~~~~hv~aniGDgTffHSG--~~alr~AV~~~ 540 (1186)
T PRK13029 474 ALAGIGCHYMAMWMDRSTEGFSQMGGEGVAWIGQMPF-----------SRRRHVFQNLGDGTYFHSG--LLAIRQAIAAG 540 (1186)
T ss_pred EecCcCHHHHhhccccccceeeccCcchhhheeeccc-----------CCCCCEEEEeccccchhcC--HHHHHHHHhcC
Confidence 4455554444333333355678999999999999877 3456799999999999 66 78899999999
Q ss_pred CCeEEEEEcCCccccccccccc-----CCcchhhccccCCccEEEEeCCCHHHHH--------------HHHHHHHHHHH
Q 018048 253 LPIVFVVENNLWAIGMSHLRAT-----SDPQIYKKGPAFGMPGFHVDGMDVLKVR--------------EVAKEAIERAR 313 (361)
Q Consensus 253 LPvi~VV~NN~y~is~~~~~q~-----~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~--------------~al~~Al~~ar 313 (361)
.+|+++|.+|. ...+ +..|. ..+.+....++.|+.-+.|-..|+..+. +.++...+..+
T Consensus 541 ~nit~kIL~N~-avAM-TGgQp~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr 618 (1186)
T PRK13029 541 VNITYKILYND-AVAM-TGGQPVDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELR 618 (1186)
T ss_pred CCEEEEEEeCc-chhc-cCCCCCCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHh
Confidence 99999999998 3333 22222 2233444778999998877554554442 33333333334
Q ss_pred cCCCCEEEEE
Q 018048 314 RGEGPTLVEC 323 (361)
Q Consensus 314 ~~~gP~lIev 323 (361)
+.+|+++|-.
T Consensus 619 ~~~GvsViI~ 628 (1186)
T PRK13029 619 EVPGVSVLIY 628 (1186)
T ss_pred cCCCcEEEEE
Confidence 6788888754
No 145
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.09 E-value=0.002 Score=73.31 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=72.0
Q ss_pred ceEEEEECCCcc-cCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc----------------cccCCcchhhccccC
Q 018048 225 HVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------------RATSDPQIYKKGPAF 286 (361)
Q Consensus 225 ~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~----------------~q~~~~d~~~~A~a~ 286 (361)
.-||++.|||.. ..| .+.|.-+.+.+.+|.+||.||. |+.+..+. ......|+..+|.++
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 479999999955 488 8889999999999999999998 55432111 011245788899999
Q ss_pred CccEE-EEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 287 GMPGF-HVD-GMDVLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 287 Gi~~~-~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
|.+++ ++. +.++.++.+ ++.+|.+.+||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~----~~~~A~~~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLK----AFREAEAYDGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHH----HHHHHHcCCCCEEEEEECC
Confidence 99998 665 457777655 4455567899999999874
No 146
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.85 E-value=0.0098 Score=52.84 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHhhhhhcCCCceEEEEE--CCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcc
Q 018048 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFF--GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 278 (361)
Q Consensus 201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~--GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d 278 (361)
.-+|.|.+.+ .+++.+|++ |=|..+ . ...|..|...++|+|+|+-.-... ...........|
T Consensus 52 ~~~A~g~ar~------------~g~~~v~~~~~GpG~~n-~--~~~l~~A~~~~~Pvl~i~g~~~~~-~~~~~~~q~~~d 115 (172)
T PF02776_consen 52 AFMADGYARA------------TGRPGVVIVTSGPGATN-A--LTGLANAYADRIPVLVITGQRPSA-GEGRGAFQQEID 115 (172)
T ss_dssp HHHHHHHHHH------------HSSEEEEEEETTHHHHT-T--HHHHHHHHHTT-EEEEEEEESSGG-GTTTTSTTSSTH
T ss_pred HHHHHHHHHh------------hccceEEEeecccchHH-H--HHHHhhcccceeeEEEEecccchh-hhcccccccchh
Confidence 3456677666 244444444 444443 2 667888999999999999877622 111111122347
Q ss_pred hhhccccCCccEEEEeCCCHHHHHHHHHHHHHHH-HcCCCCEEEEEEE
Q 018048 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA-RRGEGPTLVECET 325 (361)
Q Consensus 279 ~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~a-r~~~gP~lIev~t 325 (361)
...+++.+.-...+++..+ ++.+.+++|+..+ ....||+.|++..
T Consensus 116 ~~~~~~~~~k~~~~v~~~~--~~~~~~~~A~~~a~~~~~gPv~l~ip~ 161 (172)
T PF02776_consen 116 QQSLFRPVTKWSYRVTSPD--DLPEALDRAFRAATSGRPGPVYLEIPQ 161 (172)
T ss_dssp HHHHHGGGSSEEEEECSGG--GHHHHHHHHHHHHHHCSTSEEEEEEEH
T ss_pred hcchhccccchhcccCCHH--HHHHHHHHHHHHhccCCCccEEEEcCh
Confidence 7778888887888887555 8888999999999 6678999999854
No 147
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.80 E-value=0.0073 Score=51.87 Aligned_cols=105 Identities=19% Similarity=0.188 Sum_probs=67.6
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE-CCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcc
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ 278 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~-GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d 278 (361)
...+|.|++.+ .. ..+++++ |.|..+ . .+.|..|...++||++|+...+.. .... ......+
T Consensus 47 a~~~A~G~a~~-----------~~-~~v~~~~~gpg~~~-~--~~~l~~a~~~~~Pvl~i~~~~~~~-~~~~-~~~q~~~ 109 (154)
T cd06586 47 AAGAAAGYARA-----------GG-PPVVIVTSGTGLLN-A--INGLADAAAEHLPVVFLIGARGIS-AQAK-QTFQSMF 109 (154)
T ss_pred HHHHHHHHHHh-----------hC-CEEEEEcCCCcHHH-H--HHHHHHHHhcCCCEEEEeCCCChh-hhcc-CcccccC
Confidence 34567787777 33 4444444 888764 2 677888889999999999766522 1111 1112233
Q ss_pred hhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048 279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 279 ~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev 323 (361)
...+.+. ++...+.-+++.+..+.+.+|++.+....||++|++
T Consensus 110 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 110 DLGMYRS--IPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHHHHHH--hhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 4444443 444444445666888888999998888889999986
No 148
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.78 E-value=0.013 Score=51.82 Aligned_cols=108 Identities=12% Similarity=0.111 Sum_probs=69.9
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhh-hCCCCeEEEEEcCCcccccccccccCC
Q 018048 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSHLRATSD 276 (361)
Q Consensus 198 G~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~-~~~LPvi~VV~NN~y~is~~~~~q~~~ 276 (361)
+.+..+|.|+.++ .++.++|+.+=|-. .....|..|. ..++|+++|+-.-+ ..+.....|...
T Consensus 44 e~aa~~aAg~~~~------------~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg-~~~~~~~~q~~~ 107 (157)
T TIGR03845 44 EEGVGICAGAYLA------------GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRG-VYKEKIPAQIPM 107 (157)
T ss_pred HHHHHHHHHHHHh------------cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccC-CCCCCCccccch
Confidence 3345556666654 45677888888833 3477888998 99999999996554 111111111111
Q ss_pred cchhh-ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Q 018048 277 PQIYK-KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324 (361)
Q Consensus 277 ~d~~~-~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~ 324 (361)
..+.+ ....++++...++. ++++ .++++|++.+.+.++|+.|-+.
T Consensus 108 g~~~~~~l~~~~i~~~~i~~--~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 108 GRATPKLLDTLGIPYTIPRE--PEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred hhhhHHHHHHcCCCeEEeCC--HHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 11111 11335668888865 5588 8999999999999999998763
No 149
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.78 E-value=0.009 Score=53.00 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=65.8
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...+..|...++|+++|.-+..... .........|..++++.+--...+|+ ++.++.++
T Consensus 65 ~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~--~~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~~ 137 (164)
T cd07039 65 GVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDE--LGTDYFQEVDLLALFKDVAVYNETVT--SPEQLPEL 137 (164)
T ss_pred EEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccc--cCCCCCcccCHHHHHHHhhcEEEEeC--CHHHHHHH
Confidence 44555557777662 5689999999999999987665221 11111223466677777766666776 55588889
Q ss_pred HHHHHHHHHcCCCCEEEEEEE
Q 018048 305 AKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 305 l~~Al~~ar~~~gP~lIev~t 325 (361)
+++|++.++...||+.|++-.
T Consensus 138 i~~A~~~a~~~~GPV~l~iP~ 158 (164)
T cd07039 138 LDRAIRTAIAKRGVAVLILPG 158 (164)
T ss_pred HHHHHHHHhcCCCCEEEEeCh
Confidence 999999998888999999843
No 150
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.74 E-value=0.0081 Score=52.08 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=66.9
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
+.-+|.|++++ ..+..+++.+..-++... ...|..|...++|+|+|+-+.... ... .......|.
T Consensus 46 A~~~A~g~~~~-----------~~~~~v~~~~~gpG~~n~--~~~l~~A~~~~~Pll~i~~~~~~~-~~~-~~~~q~~d~ 110 (155)
T cd07035 46 AVGMADGYARA-----------TGKPGVVLVTSGPGLTNA--VTGLANAYLDSIPLLVITGQRPTA-GEG-RGAFQEIDQ 110 (155)
T ss_pred HHHHHHHHHHH-----------HCCCEEEEEcCCCcHHHH--HHHHHHHHhhCCCEEEEeCCCccc-ccc-CCcccccCH
Confidence 34556666666 222334444424444433 778999999999999998766511 111 111112344
Q ss_pred hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEE
Q 018048 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVEC 323 (361)
Q Consensus 280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev 323 (361)
..+.+.+-....+++ ++.++.+.+.+|++.+... +||+.|++
T Consensus 111 ~~~~~~~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 111 VALFRPITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HHHHHHHhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 555555544455664 5568888999999999877 79999987
No 151
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.26 E-value=0.025 Score=49.98 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=62.0
Q ss_pred eEEEEE--CCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-ccccc-ccc-c--CC-cchhhccccCCccEEEEeCCC
Q 018048 226 VTLAFF--GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH-LRA-T--SD-PQIYKKGPAFGMPGFHVDGMD 297 (361)
Q Consensus 226 ~Vv~~~--GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~-~~q-~--~~-~d~~~~A~a~Gi~~~~Vdg~D 297 (361)
+.+|++ |=|..+. ...|..|...+.|+|+|+-+.... .+... ..+ . .. .|...+.+.+--...+|. +
T Consensus 60 ~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~ 134 (162)
T cd07038 60 LGALVTTYGVGELSA---LNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLT--D 134 (162)
T ss_pred CEEEEEcCCccHHHH---HHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeC--C
Confidence 444444 6665552 668999999999999998765421 11100 000 0 11 145666666666677775 4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048 298 VLKVREVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 298 ~~~v~~al~~Al~~ar~~~gP~lIev 323 (361)
+.++.+.+++|++.+..++||+.|++
T Consensus 135 ~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 135 PENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 55888899999999999889999987
No 152
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.10 E-value=0.025 Score=49.35 Aligned_cols=91 Identities=27% Similarity=0.217 Sum_probs=60.1
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-cccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.+++..|-|..+. ...|..|...+.|+|+|+-+-... .+.+ .......|...+.+. .....++ .++.++.+.
T Consensus 67 v~~~~~gpG~~n~---~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~ 139 (160)
T cd07034 67 AMTATSGPGLNLM---AEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQSDLMAARYGGH-PWPVLAP--SSVQEAFDL 139 (160)
T ss_pred EEEeeCcchHHHH---HHHHHHHHhCCCCEEEEEeeCCCCCCCCC-CcCcHHHHHHHhCCC-CEEEEeC--CCHHHHHHH
Confidence 6667778877773 567888888899999999765421 1110 111111233334433 3445555 466799999
Q ss_pred HHHHHHHHHcCCCCEEEEE
Q 018048 305 AKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 305 l~~Al~~ar~~~gP~lIev 323 (361)
+++|++.++..++|++|.+
T Consensus 140 ~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 140 ALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHhCCCEEEEc
Confidence 9999999999889999865
No 153
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.55 E-value=0.085 Score=46.83 Aligned_cols=108 Identities=13% Similarity=0.046 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~ 281 (361)
-+|-|.+.+. +.-.++++..|=|..+ . ...+..|...+.|+|+|+-+-.... .........|...
T Consensus 49 ~mAdgyar~s----------g~~gv~~~t~GpG~~n-~--~~gl~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~ 113 (162)
T cd07037 49 FFALGLAKAS----------GRPVAVVCTSGTAVAN-L--LPAVVEAYYSGVPLLVLTADRPPEL--RGTGANQTIDQVG 113 (162)
T ss_pred HHHHHHHHhh----------CCCEEEEECCchHHHH-H--hHHHHHHHhcCCCEEEEECCCCHHh--cCCCCCcccchhh
Confidence 3466666652 2223344444666666 2 5689999999999999987543211 1111112234455
Q ss_pred ccccCCccEEEEeCCC----HHHHHHHHHHHHHHHHcCC-CCEEEEEE
Q 018048 282 KGPAFGMPGFHVDGMD----VLKVREVAKEAIERARRGE-GPTLVECE 324 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D----~~~v~~al~~Al~~ar~~~-gP~lIev~ 324 (361)
+.+.+--...+|...+ ...+.+.+++|+..++.+. ||++|++-
T Consensus 114 l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 114 LFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred hccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 5555544555665443 1116778899999998865 99999873
No 154
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=95.43 E-value=0.041 Score=55.08 Aligned_cols=115 Identities=15% Similarity=0.140 Sum_probs=74.0
Q ss_pred ccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEE--ECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc
Q 018048 196 FIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAF--FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA 273 (361)
Q Consensus 196 ~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~--~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q 273 (361)
.=|.++.+|.|+.+| ..++.+|.+ .|=|-.-.- ..+|.....|++|++++|-.-++ .+....-|
T Consensus 34 ~E~~av~iaaG~~la-----------tG~~~~v~mQnSGlGn~vN~--l~SL~~~~~y~iP~l~~i~~RG~-~g~~depq 99 (361)
T TIGR03297 34 NEGAAVGLAAGAYLA-----------TGKRAAVYMQNSGLGNAVNP--LTSLADTEVYDIPLLLIVGWRGE-PGVHDEPQ 99 (361)
T ss_pred CchHHHHHHHHHHHh-----------cCCccEEEEecCchhhhhhH--HHhhccccccCcCeeEEEecCCC-CCCCCCch
Confidence 457788999999998 233444443 333321111 33444457799999999987762 23221222
Q ss_pred c--CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 274 T--SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 274 ~--~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
. ...--.++.+++|+++..++. +..+....+..|++.+.+.++|+.|-+.-
T Consensus 100 h~~~G~~t~~lL~~~~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~p~a~l~~~ 152 (361)
T TIGR03297 100 HVKQGRITLSLLDALEIPWEVLST-DNDEALAQIERALAHALATSRPYALVVRK 152 (361)
T ss_pred hhHHhHHHHHHHHHcCCCEEECCC-ChHHHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 1 122234566789999999953 33467778999999999999998887744
No 155
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=95.17 E-value=0.13 Score=51.71 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc--cccccccccCCc
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA--IGMSHLRATSDP 277 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~--is~~~~~q~~~~ 277 (361)
++.+|+|+++| +.++++.+-=+++.-- +|.+.+++-..+|+|+++.+.. + .+.+...+....
T Consensus 60 A~~~a~GAs~a-------------G~Ra~TaTSg~Gl~lm--~E~~~~a~~~e~P~Viv~~~R~-gp~tg~p~~~~q~D~ 123 (376)
T PRK08659 60 SMAAVIGASWA-------------GAKAMTATSGPGFSLM--QENIGYAAMTETPCVIVNVQRG-GPSTGQPTKPAQGDM 123 (376)
T ss_pred HHHHHHhHHhh-------------CCCeEeecCCCcHHHH--HHHHHHHHHcCCCEEEEEeecC-CCCCCCCCCcCcHHH
Confidence 46789999998 4456666555555533 7899999999999988888876 3 233332222222
Q ss_pred chhhccccCC-ccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048 278 QIYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (361)
Q Consensus 278 d~~~~A~a~G-i~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (361)
+.. +..++| .+.+.....|+++.++....|++-+.+..-|+++-... .-+|+..
T Consensus 124 ~~~-~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~--~lsh~~~ 178 (376)
T PRK08659 124 MQA-RWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE--VVGHMRE 178 (376)
T ss_pred HHH-hcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEech--HhhCCcc
Confidence 222 222333 55577788899999999999999999888999998877 3667643
No 156
>PRK08611 pyruvate oxidase; Provisional
Probab=94.86 E-value=0.15 Score=54.04 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=66.6
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...+..|-..+.|+|+|.-.-.... .........|...+.+.+---..+|+ ++.++.++
T Consensus 70 gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~--~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~~~~~ 142 (576)
T PRK08611 70 GVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDL--LGTDFFQEVNLEKMFEDVAVYNHQIM--SAENLPEI 142 (576)
T ss_pred eEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccc--cCCCCccccCHHHHhhcccceeEEeC--CHHHHHHH
Confidence 44555558888872 4578999999999999987654221 11111223466677776655555665 45588889
Q ss_pred HHHHHHHHHcCCCCEEEEEEEe
Q 018048 305 AKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~~gP~lIev~t~ 326 (361)
+.+|+..+....||+.|++-.+
T Consensus 143 l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 143 VNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred HHHHHHHHhhCCCCEEEEeChh
Confidence 9999999988889999998664
No 157
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=94.48 E-value=0.24 Score=49.42 Aligned_cols=114 Identities=18% Similarity=0.100 Sum_probs=80.6
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
++.+|+|+++| +.++++.+-++++.-. +|.|..|+-..+|+++++.+-. +-++. ..+....|.
T Consensus 60 A~~~a~GAs~a-------------G~Ra~taTSg~Gl~lm--~E~l~~a~~~e~P~v~v~v~R~-~p~~g-~t~~eq~D~ 122 (352)
T PRK07119 60 AINMVYGAAAT-------------GKRVMTSSSSPGISLK--QEGISYLAGAELPCVIVNIMRG-GPGLG-NIQPSQGDY 122 (352)
T ss_pred HHHHHHHHHhh-------------CCCEEeecCcchHHHH--HHHHHHHHHccCCEEEEEeccC-CCCCC-CCcchhHHH
Confidence 46789999998 6678888888888855 8999999999999888888754 22221 112111232
Q ss_pred --hhccccC-CccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048 280 --YKKGPAF-GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (361)
Q Consensus 280 --~~~A~a~-Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (361)
+.+..+. ..+.+..+..|+++.++....|.+-+.+..-|+++-...+ .+|+
T Consensus 123 ~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~ 176 (352)
T PRK07119 123 FQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQM 176 (352)
T ss_pred HHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCc
Confidence 1111111 2355567778999999999999999988888999988773 3564
No 158
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.45 E-value=0.23 Score=52.27 Aligned_cols=95 Identities=12% Similarity=0.029 Sum_probs=63.8
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...+..|-..+.|+|+|+-.-... ..........|...+++.+--...+|. ++.++...
T Consensus 66 gv~~~t~GPG~~N~---l~~l~~A~~~~~Pvl~i~G~~~~~--~~~~~~~q~~d~~~l~~~vtk~~~~v~--~~~~~~~~ 138 (549)
T PRK06457 66 SACMGTSGPGSIHL---LNGLYDAKMDHAPVIALTGQVESD--MIGHDYFQEVNLTKLFDDVAVFNQILI--NPENAEYI 138 (549)
T ss_pred eEEEeCCCCchhhh---HHHHHHHHhcCCCEEEEecCCCcc--ccCCCcccccchhhhhccceeEEEEeC--CHHHHHHH
Confidence 44455568888772 557999999999999998654311 111111223355666655544445554 45588889
Q ss_pred HHHHHHHHHcCCCCEEEEEEEe
Q 018048 305 AKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~~gP~lIev~t~ 326 (361)
+++|+..+....||+.|++-.+
T Consensus 139 i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 139 IRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred HHHHHHHHhcCCCCEEEEeCHh
Confidence 9999999888889999999754
No 159
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.43 E-value=0.17 Score=53.12 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=66.7
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...+..|...+.|||+|+-......-..........|...+++.+--...+|+ ++.++.+.
T Consensus 67 gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 141 (554)
T TIGR03254 67 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAEDIGIG 141 (554)
T ss_pred EEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHHHHHHH
Confidence 45555668888873 56799999999999999875542210001111223466677777666666776 45688889
Q ss_pred HHHHHHHHHcC-CCCEEEEEEEe
Q 018048 305 AKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~-~gP~lIev~t~ 326 (361)
+.+|++.++.+ .||+.|++-.+
T Consensus 142 i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 142 IARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHHHHHHHhcCCCCcEEEEcCHH
Confidence 99999998875 48999998764
No 160
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.35 E-value=0.17 Score=53.53 Aligned_cols=109 Identities=20% Similarity=0.151 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY 280 (361)
Q Consensus 201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~ 280 (361)
.-+|-|.+.+. +.-.++++..|-|+.+- ...|.+|...+.|+|.|.-.=. ............|..
T Consensus 52 a~mAdgyar~T----------GkpgV~~~tsGPGatN~---~tgla~A~~d~~Pll~itGqv~--~~~~g~~afQe~D~~ 116 (550)
T COG0028 52 AFAADGYARAT----------GKPGVCLVTSGPGATNL---LTGLADAYMDSVPLLAITGQVP--TSLIGTDAFQEVDQV 116 (550)
T ss_pred HHHHHHHHHHc----------CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCcc--ccccCcchhhhcchh
Confidence 34577777662 45578888999999982 4469999999999998875221 111112222334777
Q ss_pred hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
.+.+.+=-..++|.. ++++.+.+++|++.|..++ ||++|++-.+
T Consensus 117 ~l~~p~tk~~~~v~~--~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 117 GLFRPITKYNFEVRS--PEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred hHhhhhheeEEEeCC--HHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 777776666667764 4599999999999999877 9999998654
No 161
>PRK07524 hypothetical protein; Provisional
Probab=93.84 E-value=0.31 Score=50.97 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=65.9
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCc-ccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y-~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~ 303 (361)
.++++..|=|..+. ...+..|...++|||+|+-.... .++..........|...+.+.+-....+|. ++.++.+
T Consensus 66 gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (535)
T PRK07524 66 GVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM--SAEDLPE 140 (535)
T ss_pred eEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--CHHHHHH
Confidence 45556668887772 56799999999999999865431 111100000112466677777766666775 4558888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 304 VAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 304 al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
.+.+|+..|+.. .||+.|++-.+
T Consensus 141 ~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 141 VLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCHh
Confidence 999999999876 59999998754
No 162
>PRK07064 hypothetical protein; Provisional
Probab=93.77 E-value=0.31 Score=51.06 Aligned_cols=110 Identities=20% Similarity=0.108 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcchh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIY 280 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d~~ 280 (361)
-+|.|.+.+. +.-.++++..|=|..+. ...+..|...+.|||+|+-+-. ..++..........|..
T Consensus 55 ~~A~gyar~t----------g~~~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~ 121 (544)
T PRK07064 55 NMADAHARVS----------GGLGVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQL 121 (544)
T ss_pred HHHHHHHHhc----------CCCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHH
Confidence 3466666651 22345555668888872 5679999999999999986422 11111100001123566
Q ss_pred hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
.+++.+=-...+|+ ++.++...+++|+..+... .||+.|++-.+
T Consensus 122 ~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 122 TMLRAVSKAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred HHhhhhcceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 66666655566775 4568888999999998886 69999999754
No 163
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=93.72 E-value=0.34 Score=51.41 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=62.7
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCc-ccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y-~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~ 303 (361)
.++++..|=|.++. ...+..|...+.|||+|+-.-.. .++ +......|...+++.+--...+|+ ++.++..
T Consensus 70 gv~~~t~GPG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~---~~~~q~~d~~~l~~~~tk~~~~i~--~~~~~~~ 141 (588)
T PRK07525 70 GMVIGQNGPGITNF---VTAVATAYWAHTPVVLVTPQAGTKTIG---QGGFQEAEQMPMFEDMTKYQEEVR--DPSRMAE 141 (588)
T ss_pred EEEEEcCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccCC---CCCCcccchhhhhhhheeEEEECC--CHHHHHH
Confidence 45555568887772 45788999999999999842220 111 111112355556665544444554 5568888
Q ss_pred HHHHHHHHHHcCCCCEEEEEEEe
Q 018048 304 VAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 304 al~~Al~~ar~~~gP~lIev~t~ 326 (361)
++++|+..++...||+.|++-.+
T Consensus 142 ~i~rA~~~A~~~~GPV~i~iP~D 164 (588)
T PRK07525 142 VLNRVFDKAKRESGPAQINIPRD 164 (588)
T ss_pred HHHHHHHHHhcCCCCEEEEcChh
Confidence 99999999999899999999754
No 164
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.69 E-value=0.3 Score=52.11 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=63.7
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...|..|...+.|||+|+-+-... ..........|...+++.+--...+|+ +++++...
T Consensus 87 gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~--~~~~~~~Qe~d~~~~~~~vtk~~~~v~--~~~~i~~~ 159 (616)
T PRK07418 87 GVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRP--AIGTDAFQETDIFGITLPIVKHSYVVR--DPSDMARI 159 (616)
T ss_pred eEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCcc--ccCCCCcccccHHHHhhhcceeEEEeC--CHHHHHHH
Confidence 44555558888883 567999999999999998643311 101111122455556665544445665 55688889
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 018048 305 AKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~~-gP~lIev~t~ 326 (361)
+.+|++.|..++ ||+.|++-.+
T Consensus 160 l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 160 VAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred HHHHHHHHhcCCCCcEEEecchh
Confidence 999999998876 9999998653
No 165
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=93.63 E-value=0.34 Score=51.13 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=65.0
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~ 303 (361)
.++++..|=|..+. ...+..|...+.|||+|+-.-.... +. .+......|...+++.+--...+|+ ++.++.+
T Consensus 74 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~-~~~~~q~~d~~~~~~~~tk~s~~v~--~~~~~~~ 147 (569)
T PRK09259 74 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDL-QQGDYEELDQLNAAKPFCKAAFRVN--RAEDIGI 147 (569)
T ss_pred EEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccc-cCCCccccchhhhhhhheeeeEEcC--CHHHHHH
Confidence 44555558887773 5679999999999999986543211 11 1111123456666666655566665 5669999
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 304 VAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 304 al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
.+.+|+..|..+ .||+.|++-.+
T Consensus 148 ~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 148 GVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred HHHHHHHHhhhCCCCcEEEEeCHH
Confidence 999999999886 58999998754
No 166
>PRK07586 hypothetical protein; Validated
Probab=93.59 E-value=0.32 Score=50.59 Aligned_cols=96 Identities=19% Similarity=0.093 Sum_probs=65.0
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...+..|...+.|||+|.-.-... ..........|...+++.+--...+|. ++.++.+.
T Consensus 66 gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~i~G~~~~~--~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 138 (514)
T PRK07586 66 AATLLHLGPGLANG---LANLHNARRARTPIVNIVGDHATY--HRKYDAPLTSDIEALARPVSGWVRRSE--SAADVAAD 138 (514)
T ss_pred EEEEecccHHHHHH---HHHHHHHHhcCCCEEEEecCCchh--ccCCCcccccchhhhhccccceeeecC--CHHHHHHH
Confidence 44555668887662 557888999999999998654311 111111123466667776655555665 45588889
Q ss_pred HHHHHHHHHcC-CCCEEEEEEEec
Q 018048 305 AKEAIERARRG-EGPTLVECETYR 327 (361)
Q Consensus 305 l~~Al~~ar~~-~gP~lIev~t~R 327 (361)
+++|+..++.+ .||+.|++-.+-
T Consensus 139 i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 139 AAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred HHHHHHHHhcCCCCcEEEEeccch
Confidence 99999999987 699999997753
No 167
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=93.54 E-value=0.39 Score=50.65 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceE--EEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVT--LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~V--v~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
-+|-|.+.+ .+++. ++..|=|..+. .-.|..|...+.|||+|.-.-.... .........|.
T Consensus 65 ~~Adgyar~------------tg~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~ 127 (564)
T PRK08155 65 FIAQGMART------------TGKPAVCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASM--IGTDAFQEVDT 127 (564)
T ss_pred HHHHHHHHH------------cCCCeEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCccc--ccCCCccccch
Confidence 346666665 23444 44447777772 5578899999999999986433111 01111122345
Q ss_pred hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
..+++.+--...+|+ ++.++...+++|+..++.. .||+.|++-.+
T Consensus 128 ~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 128 YGISIPITKHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhhhccceEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 555555444455664 6678999999999999887 49999999654
No 168
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.51 E-value=0.37 Score=51.22 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=65.4
Q ss_pred CceEEEE--ECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048 224 DHVTLAF--FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 301 (361)
Q Consensus 224 ~~~Vv~~--~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v 301 (361)
+++.+|+ .|=|..+. ...|..|...+.|||+|+-.-.... ..+......|...+.+.+--...+|. ++.++
T Consensus 66 g~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~D~~~~~~~vtk~~~~v~--~~~~i 138 (588)
T TIGR01504 66 GNIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRAR--LHKEDFQAVDIAAIAKPVSKMAVTVR--EAALV 138 (588)
T ss_pred CCeEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCcccccCHHHHhhhhceEEEEcC--CHHHH
Confidence 3444444 57877762 5579999999999999986544221 11111223466677776665566665 56688
Q ss_pred HHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 302 REVAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 302 ~~al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
.+.+++|+..|+.++ ||+.|++-.+
T Consensus 139 ~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 139 PRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred HHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 889999999988765 8999999765
No 169
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=93.49 E-value=0.53 Score=49.52 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=62.5
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. .-.|..|-..+.|||+|.-.-... ...+......|...+++.+=-...+| .++.++.+.
T Consensus 73 gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~~~~~~ 145 (557)
T PRK08199 73 GICFVTRGPGATNA---SIGVHTAFQDSTPMILFVGQVARD--FREREAFQEIDYRRMFGPMAKWVAEI--DDAARIPEL 145 (557)
T ss_pred EEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEecCCccc--cCCCCcccccCHHHhhhhhhceeeec--CCHHHHHHH
Confidence 34455558887772 567999999999999998543211 11111112235555555543344455 467788899
Q ss_pred HHHHHHHHHcC-CCCEEEEEEEe
Q 018048 305 AKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~-~gP~lIev~t~ 326 (361)
+.+|+..+..+ .||+.|++-.+
T Consensus 146 ~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 146 VSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred HHHHHHHHhcCCCCcEEEEcCHh
Confidence 99999999887 49999988754
No 170
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.42 E-value=0.36 Score=51.02 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=66.2
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...+..|-..+.|||+|.-.-.... .........|...+++.+--...+|+ ++.++...
T Consensus 69 gv~~vt~GPG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~l~~~itk~s~~v~--~~~~~~~~ 141 (574)
T PRK06466 69 GVVLVTSGPGATNA---ITGIATAYMDSIPMVVLSGQVPSTL--IGEDAFQETDMVGISRPIVKHSFMVK--HASEIPEI 141 (574)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccc--cCCCcccccchhhhhhccceeEEEcC--CHHHHHHH
Confidence 45566668888872 5679999999999999986544221 11111223466667776655566665 45688889
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 018048 305 AKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~~-gP~lIev~t~ 326 (361)
+++|+..|+.+. ||+.|++-.+
T Consensus 142 ~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 142 IKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred HHHHHHHHhcCCCCcEEEEcCHh
Confidence 999999998874 9999999775
No 171
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.41 E-value=0.56 Score=49.51 Aligned_cols=94 Identities=17% Similarity=0.106 Sum_probs=63.9
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHH
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 305 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al 305 (361)
++++..|=|..+. ...+..|-..+.|||+|.-.-.... .........|...+++.+--...+|+ ++.++...+
T Consensus 71 v~~~t~GpG~~N~---l~gi~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~i~~~~tk~~~~v~--~~~~~~~~l 143 (572)
T PRK06456 71 VCTATSGPGTTNL---VTGLITAYWDSSPVIAITGQVPRSV--MGKMAFQEADAMGVFENVTKYVIGIK--RIDEIPQWI 143 (572)
T ss_pred EEEeCCCCCHHHH---HHHHHHHHhhCCCEEEEecCCCccc--cCCCCccccchhhhhhccceeEEEeC--CHHHHHHHH
Confidence 3444568888872 5678999999999999986543211 11111222355666666655566674 566888889
Q ss_pred HHHHHHHHcCC-CCEEEEEEEe
Q 018048 306 KEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 306 ~~Al~~ar~~~-gP~lIev~t~ 326 (361)
.+|++.++.+. ||+.|++-.+
T Consensus 144 ~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 144 KNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred HHHHHHHhcCCCCcEEEecChh
Confidence 99999998865 9999999754
No 172
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.40 E-value=0.39 Score=50.82 Aligned_cols=94 Identities=22% Similarity=0.228 Sum_probs=63.4
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~ 303 (361)
.++++..|=|..+. ...|..|-..+.|||+|.-.-. ..++ .......|...+.+.+--...+|. ++.++..
T Consensus 66 gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~I~g~~~~~~~~---~~~~Q~~d~~~l~~~vtk~~~~v~--~~~~~~~ 137 (579)
T TIGR03457 66 SMVIGQNGPGVTNC---VTAIAAAYWAHTPVVIVTPEAGTKTIG---LGGFQEADQLPMFQEFTKYQGHVR--HPSRMAE 137 (579)
T ss_pred EEEEECCCchHHHH---HHHHHHHhhcCCCEEEEeCCCccccCC---CCCCcccchhhhhhcceeEEEecC--CHHHHHH
Confidence 44555568888872 4579999999999999974322 1111 111122355666666555555664 5568888
Q ss_pred HHHHHHHHHHcCCCCEEEEEEEe
Q 018048 304 VAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 304 al~~Al~~ar~~~gP~lIev~t~ 326 (361)
.+++|+..+..++||+.|++-.+
T Consensus 138 ~i~~A~~~A~~~~GPV~l~iP~D 160 (579)
T TIGR03457 138 VLNRCFERAWREMGPAQLNIPRD 160 (579)
T ss_pred HHHHHHHHHhcCCCCEEEEeCcc
Confidence 99999999999889999999754
No 173
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.40 E-value=0.41 Score=50.61 Aligned_cols=95 Identities=17% Similarity=0.055 Sum_probs=64.2
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|+.+. .-.|..|-..++|||+|+-.-.... .........|...+++.+--...+|+ ++.++.+.
T Consensus 76 gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~--~~~~~~Q~~d~~~l~~~vtk~~~~v~--~~~~~~~~ 148 (578)
T PRK06112 76 AVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQ--TDRNAFQELDHIALFQSCTKWVRRVT--VAERIDDY 148 (578)
T ss_pred EEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccc--CCCCCccccChhhhhccccceEEEeC--CHHHHHHH
Confidence 44555557777662 5578889999999999985433111 11111223456667777666666675 45588889
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 018048 305 AKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~~-gP~lIev~t~ 326 (361)
+++|+..++.+. ||+.|++-.+
T Consensus 149 i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 149 VDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred HHHHHHHHhhCCCCcEEEEcCHh
Confidence 999999998874 9999999765
No 174
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.32 E-value=0.37 Score=50.93 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~ 281 (361)
-+|-|.+.+. +.-.++++..|=|.++. ...+..|...+.|||+|+-.-.... ..+......|...
T Consensus 56 ~mAdgYar~t----------g~~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~ 120 (574)
T PRK07979 56 HMADGLARAT----------GEVGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSL--IGYDAFQECDMVG 120 (574)
T ss_pred HHHHHHHHHh----------CCceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhc--cCCCCCceecHHH
Confidence 3566666652 23355666668887772 5678999999999999986543111 1111122346666
Q ss_pred ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEec
Q 018048 282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETYR 327 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~R 327 (361)
+.+.+--...+|+ +++++...+++|+..+..+. ||+.|++-.+=
T Consensus 121 l~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 121 ISRPVVKHSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred HhhcccceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 7776666666775 56688889999999988875 99999997653
No 175
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.27 E-value=0.37 Score=51.02 Aligned_cols=108 Identities=21% Similarity=0.228 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~ 281 (361)
-+|-|.+.+. +.-.++++..|=|..+. ...|..|-..+.|||+|+-.-.... .........|...
T Consensus 66 ~mAdgyar~t----------g~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~ 130 (570)
T PRK06725 66 HAAEGYARAS----------GKVGVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPL--IGKDGFQEADVVG 130 (570)
T ss_pred HHHHHHHHHh----------CCCeEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCccc--ccCCCCcccchhh
Confidence 3566666651 22345556668887772 5578899999999999986443111 1111122346667
Q ss_pred ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
+++.+--...+|. ++.++.+.+++|+..++.+. ||+.|++-.+
T Consensus 131 l~~~itk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 131 ITVPVTKHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred hhhccceeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence 7777766666775 55688899999999998875 9999999764
No 176
>PLN02470 acetolactate synthase
Probab=93.13 E-value=0.37 Score=51.13 Aligned_cols=96 Identities=26% Similarity=0.243 Sum_probs=65.4
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~ 303 (361)
-.++++..|=|.++. ...+..|-..+.|||+|.-.-... ..........|...+++.+--...+|+ ++.++.+
T Consensus 77 ~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~I~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~i~~ 149 (585)
T PLN02470 77 VGVCIATSGPGATNL---VTGLADALLDSVPLVAITGQVPRR--MIGTDAFQETPIVEVTRSITKHNYLVM--DVEDIPR 149 (585)
T ss_pred CEEEEECCCccHHHH---HHHHHHHHhcCCcEEEEecCCChh--hcCCCcCcccchhhhhhhheEEEEEcC--CHHHHHH
Confidence 345566668888872 557889999999999998644311 111111122355566666655556664 5668999
Q ss_pred HHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 304 VAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 304 al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
.+++|+..++.++ ||+.|++-.+
T Consensus 150 ~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 150 VIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred HHHHHHHHhcCCCCCeEEEEecCc
Confidence 9999999998875 9999999754
No 177
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.03 E-value=0.51 Score=50.11 Aligned_cols=94 Identities=19% Similarity=0.160 Sum_probs=63.6
Q ss_pred eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHH
Q 018048 226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA 305 (361)
Q Consensus 226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al 305 (361)
++++..|=|..+. .-.+..|...+.|+|+|.-+-.... ..+......|...+++.+--...+| .++.++...+
T Consensus 71 v~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~itk~s~~v--~~~~~~~~~i 143 (591)
T PRK11269 71 VCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRAR--LHKEDFQAVDIESIAKPVTKWAVTV--REPALVPRVF 143 (591)
T ss_pred EEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCcccccChhhHhhcceeEEEEc--CCHHHHHHHH
Confidence 3444557777772 5578899999999999987554211 1111122345666666654445566 4566888999
Q ss_pred HHHHHHHHcCC-CCEEEEEEEe
Q 018048 306 KEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 306 ~~Al~~ar~~~-gP~lIev~t~ 326 (361)
++|++.++.+. ||+.|++-.+
T Consensus 144 ~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 144 QQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred HHHHHHHhhCCCCeEEEEeChh
Confidence 99999998865 8999999754
No 178
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.02 E-value=0.5 Score=49.61 Aligned_cols=107 Identities=27% Similarity=0.260 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCc-ccccccccccCCcchh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIY 280 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y-~is~~~~~q~~~~d~~ 280 (361)
-+|.|.+.+. +.-.++++..|=|.++. .-.|..|...+.|||+|.-.-.. .++ .......|..
T Consensus 52 ~~Adgyar~s----------g~~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~---~~~~q~~d~~ 115 (548)
T PRK08978 52 MAAIGYARAT----------GKVGVCIATSGPGATNL---ITGLADALLDSVPVVAITGQVSSPLIG---TDAFQEIDVL 115 (548)
T ss_pred HHHHHHHHHh----------CCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccC---CCCCcccchh
Confidence 4466666652 22344555557877772 56899999999999999864431 111 1111223555
Q ss_pred hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
.+++.+--...+|+ ++.++...+++|++.++.+. ||+.|++-.+
T Consensus 116 ~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 116 GLSLACTKHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred ccccCceeeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 66666655566775 56688889999999988864 9999998754
No 179
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.95 E-value=0.48 Score=50.58 Aligned_cols=96 Identities=23% Similarity=0.216 Sum_probs=64.7
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~ 303 (361)
-.++++..|=|.++. ...|..|...++|+|+|+-.-... ..........|...+++.+--...+|+ ++.++..
T Consensus 95 ~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~ 167 (612)
T PRK07789 95 VGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRG--LIGTDAFQEADIVGITMPITKHNFLVT--DADDIPR 167 (612)
T ss_pred CEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCcc--ccCCCcCcccchhhhhhcceeEEEEcC--CHHHHHH
Confidence 345556667877772 567889999999999998644311 111111222466666666555555664 5668888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 304 VAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 304 al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
.+.+|+..++.+ .||+.|++-.+
T Consensus 168 ~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 168 VIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred HHHHHHHHHhcCCCceEEEEEccc
Confidence 999999999876 49999999764
No 180
>PRK08322 acetolactate synthase; Reviewed
Probab=92.87 E-value=0.46 Score=49.82 Aligned_cols=108 Identities=17% Similarity=0.087 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~ 281 (361)
-+|.|.+.+. +.-.++++..|=|..+. ...+..|-..+.|+|+|.-+-... ...+......|...
T Consensus 52 ~~A~gyar~t----------g~~gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~--~~~~~~~q~~d~~~ 116 (547)
T PRK08322 52 FMAATYGRLT----------GKAGVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIK--RSKQGSFQIVDVVA 116 (547)
T ss_pred HHHHHHHHhh----------CCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEecccccc--ccCCCccccccHHH
Confidence 4466666651 22334445557777772 557889999999999998643311 11111122345666
Q ss_pred ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
+.+.+--...+|+ ++.++...+.+|+..+... .||+.|++-.+
T Consensus 117 ~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 117 MMAPLTKWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HhhhheeEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 6665544455664 5668888999999999886 48999999764
No 181
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=92.85 E-value=0.5 Score=49.94 Aligned_cols=109 Identities=24% Similarity=0.238 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY 280 (361)
Q Consensus 201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~ 280 (361)
.-+|.|.+.+. +.-.++++..|=|..+. ...|..|...+.|||+|.-.-... ..........|..
T Consensus 66 ~~~A~gyar~t----------g~~gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~ItG~~~~~--~~~~~~~q~~d~~ 130 (571)
T PRK07710 66 IHAAEGYARIS----------GKPGVVIATSGPGATNV---VTGLADAMIDSLPLVVFTGQVATS--VIGSDAFQEADIM 130 (571)
T ss_pred HHHHHHHHHHh----------CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeccCCcc--ccCCCCccccchh
Confidence 34566666652 22234455558887772 567889999999999998655421 1111111223555
Q ss_pred hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
.+++.+--...+|. ++.++...+++|+..++.++ ||+.|++-.+
T Consensus 131 ~l~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 131 GITMPVTKHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred hhhhcccceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 66665544555664 45588889999999888774 9999999764
No 182
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.79 E-value=0.53 Score=49.76 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=65.1
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~ 303 (361)
.++++..|=|..+. ...|..|...+.|||+|.-.-. ..++ .......|...+++.+-....+|+ ++.++.+
T Consensus 75 gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~~~~~itk~s~~v~--~~~~~~~ 146 (566)
T PRK07282 75 GVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIG---KDAFQEADIVGITMPITKYNYQIR--ETADIPR 146 (566)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCC---CCCccccChhchhcCCCceeEEcC--CHHHHHH
Confidence 45566668888772 5578899999999999986543 1111 111122355566666655566665 5568888
Q ss_pred HHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 304 VAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 304 al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
.+.+|++.++.++ ||+.|++-.+
T Consensus 147 ~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 147 IITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred HHHHHHHHHhcCCCCeEEEeCChh
Confidence 9999999998875 9999998764
No 183
>PRK12474 hypothetical protein; Provisional
Probab=92.69 E-value=0.6 Score=48.71 Aligned_cols=96 Identities=19% Similarity=0.089 Sum_probs=63.8
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...|..|...+.|||+|+-....... ........|...+++.+--...+| .++.++.+.
T Consensus 70 gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~vtk~~~~v--~~~~~~~~~ 142 (518)
T PRK12474 70 AVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHL--QYDAPLTSDIDGFARPVSRWVHRS--ASAGAVDSD 142 (518)
T ss_pred EEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhc--CCCCccccCHHHhhhcccceeeec--CCHHHHHHH
Confidence 44555668887762 55788899999999999865431110 111111236666666554444455 456688889
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEec
Q 018048 305 AKEAIERARRGE-GPTLVECETYR 327 (361)
Q Consensus 305 l~~Al~~ar~~~-gP~lIev~t~R 327 (361)
+++|+..+..+. ||++|++-.+=
T Consensus 143 i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 143 VARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred HHHHHHHHhcCCCCcEEEEechhh
Confidence 999999888875 99999997653
No 184
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.68 E-value=0.62 Score=49.03 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=65.1
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...+..|...++|||+|+-.-... ..........|...+++.+-....+|+ ++.++...
T Consensus 66 gv~~~t~GpG~~n~---l~~i~~A~~~~~Pvl~i~g~~~~~--~~~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~~ 138 (558)
T TIGR00118 66 GVVLVTSGPGATNL---VTGIATAYMDSIPMVVFTGQVPTS--LIGSDAFQEADILGITMPITKHSFQVK--SAEDIPRI 138 (558)
T ss_pred EEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCCcc--ccCCCCCcccChhhhhcCccceeEEeC--CHHHHHHH
Confidence 45555668887772 567999999999999998643211 001111122356667777766677775 45688889
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 018048 305 AKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~~-gP~lIev~t~ 326 (361)
+.+|++.+...+ ||+.|++-.+
T Consensus 139 v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 139 IKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred HHHHHHHHhcCCCCeEEEEcChh
Confidence 999999998874 8999999754
No 185
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=92.67 E-value=0.63 Score=49.31 Aligned_cols=169 Identities=19% Similarity=0.142 Sum_probs=100.1
Q ss_pred eeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCcccc
Q 018048 118 FVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFI 197 (361)
Q Consensus 118 ~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~m 197 (361)
......|.||++.|+..+ .-+ ++..|.- -|-.+++..|....+. .|....+.. .-
T Consensus 192 ~~~~l~GNeAvA~ga~~a--g~~-~~~~YPi--------TPsTei~e~la~~~~~-----~~~~~~q~E-----~E---- 246 (562)
T TIGR03710 192 DRILISGNEAIALGAIAA--GLR-FYAAYPI--------TPASDILEFLAKHLKK-----FGVVVVQAE-----DE---- 246 (562)
T ss_pred cEEEeehHHHHHHHHHHh--CCc-eecccCC--------CChhHHHHHHHHhhhh-----hCcEEEeec-----cH----
Confidence 344567999888766543 123 4455532 1233455555443331 111111111 00
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccc--ccccccC
Q 018048 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATS 275 (361)
Q Consensus 198 G~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~--~~~~q~~ 275 (361)
-.++.+|+|+++| +.++++.+-=.+++-- .|.|.+|+-..+|+|+++.|-. +.++ +++....
T Consensus 247 ~aA~~~a~GAs~a-------------G~Ra~taTSg~Gl~lm--~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~ 310 (562)
T TIGR03710 247 IAAINMAIGASYA-------------GARAMTATSGPGFALM--TEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQS 310 (562)
T ss_pred HHHHHHHHhHHhc-------------CCceeecCCCCChhHh--HHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHH
Confidence 1245779999998 4445555555555522 7899999999999888888876 4433 3222211
Q ss_pred CcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 276 ~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
...+...+.-=..+.+.+...|++++++....|.+.+.+..-|+++-...+.
T Consensus 311 D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 311 DLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred HHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 1122221110023456677788999999999999999999999999887764
No 186
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=92.66 E-value=0.74 Score=48.66 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=60.8
Q ss_pred CceEEEE--ECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048 224 DHVTLAF--FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 301 (361)
Q Consensus 224 ~~~Vv~~--~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v 301 (361)
+++.+|+ .|=|.++. ...+..|...+.|+|+|.-+-.... .........|..++++.+-....+|+ ++.++
T Consensus 65 g~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~--~~~~~~Q~~d~~~l~~~itk~~~~v~--~~~~~ 137 (574)
T PRK09124 65 GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSE--IGSGYFQETHPQELFRECSHYCELVS--NPEQL 137 (574)
T ss_pred CCcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCcccc--CCCCCccccChhhhcccceeeeEEeC--CHHHH
Confidence 3445555 47777761 3468899999999999986543111 01111112345555554433344454 55588
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 302 REVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 302 ~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
...+++|+..+....||+.|++-.+
T Consensus 138 ~~~i~~A~~~A~~~~gPV~l~iP~D 162 (574)
T PRK09124 138 PRVLAIAMRKAILNRGVAVVVLPGD 162 (574)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeChh
Confidence 8889999999988889999998543
No 187
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=92.64 E-value=1.3 Score=44.91 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=75.6
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
++.+|+|+++| +.++++.+-=++++-- .|.|.+|+-..+|+|+++.|-. ..++........|+
T Consensus 61 A~~~aiGAs~a-------------GaRa~TaTSg~Gl~lm--~E~l~~aa~~~lPiVi~~~~R~--~p~~~~~~~~q~D~ 123 (390)
T PRK08366 61 AMAACIGASAA-------------GARAFTATSAQGLALM--HEMLHWAAGARLPIVMVDVNRA--MAPPWSVWDDQTDS 123 (390)
T ss_pred HHHHHHHHHhh-------------CCCeEeeeCcccHHHH--hhHHHHHHhcCCCEEEEEeccC--CCCCCCCcchhhHH
Confidence 46789999998 5556666666666633 8999999999999888887553 12211111111232
Q ss_pred hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCC
Q 018048 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 333 (361)
Q Consensus 280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~ 333 (361)
... +--|+ +..-..|+++.++....|..-+.+..-|+++-...++.. |..
T Consensus 124 ~~~-~d~g~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~ 173 (390)
T PRK08366 124 LAQ-RDTGW--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTY 173 (390)
T ss_pred HHH-hhcCE--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-ccc
Confidence 211 11233 555568889999999999999998899999988776654 443
No 188
>PRK08617 acetolactate synthase; Reviewed
Probab=92.62 E-value=0.56 Score=49.25 Aligned_cols=94 Identities=21% Similarity=0.076 Sum_probs=63.2
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-cccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~ 303 (361)
.++++..|=|.++. ...+..|...+.|+|+|.-..... ++ +......|...+++.+--...+|+ ++.++..
T Consensus 69 gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~---~~~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~ 140 (552)
T PRK08617 69 GVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRL---KRTHQSMDNVALFRPITKYSAEVQ--DPDNLSE 140 (552)
T ss_pred EEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccC---CCCccccchhhhhhhhcceEEEeC--CHHHHHH
Confidence 34444457887772 567899999999999998643311 11 111223455666666655566675 5558888
Q ss_pred HHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 304 VAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 304 al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
.+.+|++.+..+ .||+.|++-.+
T Consensus 141 ~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 141 VLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred HHHHHHHHHccCCCCcEEEeChhh
Confidence 999999998886 48999998754
No 189
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=92.60 E-value=0.5 Score=41.34 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHH-HhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLN-MAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~-tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
+..|.|.|+. ..+++++.. ..|..-. ++.|. .++.+++|+++++...++..+..- ......+.
T Consensus 52 vg~A~GlA~~------------G~~pi~~~~--~~f~~ra-~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G-~tH~~~~~ 115 (156)
T cd07033 52 VGIAAGLALH------------GLKPFVSTF--SFFLQRA-YDQIRHDVALQNLPVKFVGTHAGISVGEDG-PTHQGIED 115 (156)
T ss_pred HHHHHHHHHC------------CCeEEEEEC--HHHHHHH-HHHHHHHHhccCCCeEEEEECCcEecCCCC-cccchHHH
Confidence 3556676664 345555555 4555322 56665 889999999998886654432111 11111122
Q ss_pred hhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048 280 YKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 280 ~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~gP~lIev 323 (361)
..+.+ .+|+++| .-.|+.++.. .++++.+.++|++|-+
T Consensus 116 ~a~~~--~iPg~~v~~Ps~~~~~~~----ll~~a~~~~~P~~irl 154 (156)
T cd07033 116 IALLR--AIPNMTVLRPADANETAA----ALEAALEYDGPVYIRL 154 (156)
T ss_pred HHHhc--CCCCCEEEecCCHHHHHH----HHHHHHhCCCCEEEEe
Confidence 22222 5666654 3346556544 4455556677998864
No 190
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=92.55 E-value=0.72 Score=46.46 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=76.9
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcc
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQ 278 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d 278 (361)
++.+|+|+++| +.++++.+-=+++.-- .|.+.+++-..+|+++++.+-. =+.+.+...+...+.
T Consensus 59 A~~~a~GAs~a-------------G~Ra~taTSg~G~~lm--~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~ 123 (375)
T PRK09627 59 GISVALGASMS-------------GVKSMTASSGPGISLK--AEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVN 123 (375)
T ss_pred HHHHHHHHHhh-------------CCCEEeecCCchHHHH--hhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHHH
Confidence 45789999998 4445665554555533 7899999999999888887753 123333322111111
Q ss_pred hhhccccCC-ccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCC
Q 018048 279 IYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL 333 (361)
Q Consensus 279 ~~~~A~a~G-i~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~ 333 (361)
..+...+| .+.+.....++++++.....|++-+.+..-|++|-... + -+|+.
T Consensus 124 -~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~-lsh~~ 176 (375)
T PRK09627 124 -QAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-T-VGHMY 176 (375)
T ss_pred -HHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-H-HhCCe
Confidence 11222222 34456788899999999999999999888999998777 3 36654
No 191
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=92.53 E-value=0.54 Score=49.85 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=63.7
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...+..|...+.|||+|+-.-... ..........|...+++.+--...+|+ ++.++...
T Consensus 65 gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~~ 137 (586)
T PRK06276 65 GVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTK--LIGNDAFQEIDALGIFMPITKHNFQIK--KPEEIPEI 137 (586)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcc--ccCCCCCccccHhhHHhhhcceEEecC--CHHHHHHH
Confidence 44555557877772 567999999999999998533211 001111122355666666665566675 45588889
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 018048 305 AKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~~-gP~lIev~t~ 326 (361)
+.+|++.|...+ ||+.|++-.+
T Consensus 138 i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 138 FRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred HHHHHHHhcCCCCCcEEEEcChh
Confidence 999999998764 8999999754
No 192
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=92.52 E-value=0.56 Score=49.28 Aligned_cols=99 Identities=14% Similarity=0.042 Sum_probs=63.5
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-cccc--cccccCCc-chhhccccCCccEEEEeCCCHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMS--HLRATSDP-QIYKKGPAFGMPGFHVDGMDVL 299 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~--~~~q~~~~-d~~~~A~a~Gi~~~~Vdg~D~~ 299 (361)
-.++++..|=|.++. ...+..|...++|||+|.-+.... ++.. .+.|.... +...+++.+--...+|. ++.
T Consensus 64 ~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~--~~~ 138 (535)
T TIGR03394 64 LGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLD--DPA 138 (535)
T ss_pred ceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeC--ChH
Confidence 345566668888883 457899999999999998654311 1110 01121112 34455555433344554 455
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 300 KVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 300 ~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
++.+.+++|+..++...||+.|++-.+=
T Consensus 139 ~~~~~~~~A~~~a~~~~gPv~i~iP~Dv 166 (535)
T TIGR03394 139 TAPAEIARVLGSARELSRPVYLEIPRDM 166 (535)
T ss_pred HhHHHHHHHHHHHHHCCCCEEEEechhh
Confidence 8888899999999888899999997653
No 193
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.47 E-value=0.53 Score=49.78 Aligned_cols=108 Identities=20% Similarity=0.210 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~ 281 (361)
-+|-|.+.+. +.-.++++..|=|.++. ...+..|...+.|||+|.-.-.... .........|...
T Consensus 56 ~mAdgyar~t----------g~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~ 120 (572)
T PRK08979 56 HMADGYARAT----------GKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNL--IGNDAFQECDMIG 120 (572)
T ss_pred HHHHHHHHHh----------CCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCCCcccchhH
Confidence 4566666652 22334455558887772 5578899999999999975433111 0111122345566
Q ss_pred ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
+++.+--...+|+ ++.++...+++|+..|+.+. ||+.|++-.+
T Consensus 121 ~~~~itk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 121 ISRPVVKHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred HhhhceeEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 6666544555665 55688889999999998865 9999998764
No 194
>PRK08266 hypothetical protein; Provisional
Probab=92.46 E-value=0.62 Score=48.77 Aligned_cols=109 Identities=17% Similarity=0.079 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccC-Ccchh
Q 018048 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATS-DPQIY 280 (361)
Q Consensus 203 ~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~-~~d~~ 280 (361)
+|.|.+.+. +.-.++++..|=|..+. ...+..|...+.|+|+|+-.=. +.++.. ..+.. .+|..
T Consensus 58 ~A~gyar~t----------g~~~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~-~~~~~~~~d~~ 123 (542)
T PRK08266 58 MAFGYARST----------GRPGVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGKG-RGHLHEMPDQL 123 (542)
T ss_pred HHHHHHHHh----------CCCeEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccCC-CCcceecccHh
Confidence 566666652 22234445558888773 5678999999999999985322 111110 01111 24666
Q ss_pred hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEec
Q 018048 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYR 327 (361)
Q Consensus 281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R 327 (361)
.+++.+--...+|+. +.++...+++|+..++.+ .||+.|++-.+-
T Consensus 124 ~~~~~~tk~~~~v~~--~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 124 ATLRSFTKWAERIEH--PSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred hHHhhhcceEEEeCC--HHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 677766555667764 458888899999988875 599999997653
No 195
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.37 E-value=0.5 Score=50.27 Aligned_cols=95 Identities=22% Similarity=0.214 Sum_probs=64.3
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|.++. ...+..|-..+.|||+|.-.-.... .........|...+++.+---..+|+ ++.++...
T Consensus 76 gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~l~~~vtk~~~~v~--~~~~i~~~ 148 (595)
T PRK09107 76 GVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHL--IGSDAFQECDTVGITRPCTKHNWLVK--DVNDLARV 148 (595)
T ss_pred EEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhh--cCCCCCcccchhhhhhhheEEEEEeC--CHHHHHHH
Confidence 45555668888872 5578899999999999986544211 01111222455566665544455664 55688889
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 018048 305 AKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~~-gP~lIev~t~ 326 (361)
+.+|++.++.+. ||+.|++-.+
T Consensus 149 l~~A~~~A~s~~~GPV~l~iP~D 171 (595)
T PRK09107 149 IHEAFHVATSGRPGPVVVDIPKD 171 (595)
T ss_pred HHHHHHHhcCCCCceEEEecCCC
Confidence 999999998874 9999998754
No 196
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.33 E-value=0.65 Score=49.18 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=63.3
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCc-ccccccccccCCcchhhccccCCccEEEEeCCCHHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y-~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~ 302 (361)
-.++++..|=|..+. ...+..|-..++|||+|.-.-.. ..+ .......|...+++.+--...+|. ++.++.
T Consensus 64 ~gv~~~t~GPG~~n~---~~~i~~A~~~~~Pvl~I~G~~~~~~~~---~~~~q~id~~~~~~~vtk~~~~v~--~~~~~~ 135 (575)
T TIGR02720 64 IGVCFGSAGPGATHL---LNGLYDAKEDHVPVLALVGQVPTTGMN---MDTFQEMNENPIYADVAVYNRTAM--TAESLP 135 (575)
T ss_pred ceEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCC---CCCcceechhhhhhhcceEEEEeC--CHHHHH
Confidence 345556668887772 55789999999999999865431 111 111122344455555544444554 455888
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 303 EVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 303 ~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
+.+.+|+..|....||+.|++-.+
T Consensus 136 ~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 136 HVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred HHHHHHHHHHhhCCCCEEEEECcc
Confidence 889999999888889999999765
No 197
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=92.27 E-value=0.48 Score=50.43 Aligned_cols=96 Identities=19% Similarity=0.050 Sum_probs=62.8
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCC-ccEEEEeCCCHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFG-MPGFHVDGMDVLKVRE 303 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~G-i~~~~Vdg~D~~~v~~ 303 (361)
.++++..|=|..+. ...+..|-..+.|||+|+-.=... ..........|..++.+.+- -...+|+ ++.++..
T Consensus 69 gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~--~~~~~~~q~~d~~~l~~~vt~k~~~~v~--~~~~~~~ 141 (597)
T PRK08273 69 GVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARA--ALGGHYQQEVDLQSLFKDVAGAFVQMVT--VPEQLRH 141 (597)
T ss_pred EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchh--hcCCCCCCccCHHHHHHHHHHHHeeEeC--CHHHHHH
Confidence 44555558888873 457889999999999998532211 10111112235555555543 3444565 4558888
Q ss_pred HHHHHHHHHHcCCCCEEEEEEEec
Q 018048 304 VAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 304 al~~Al~~ar~~~gP~lIev~t~R 327 (361)
.+++|+..|....||+.|++-.+-
T Consensus 142 ~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 142 LVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred HHHHHHHHHhhCCCCEEEEeCcch
Confidence 999999999988899999987653
No 198
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.25 E-value=0.76 Score=48.77 Aligned_cols=108 Identities=24% Similarity=0.209 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~ 281 (361)
-+|-|.+.+. +.-.++++..|=|..+. ...+..|...+.|||+|.-.=... ...+......|...
T Consensus 73 ~~AdgYar~t----------g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~--~~~~~~~q~~d~~~ 137 (587)
T PRK06965 73 HAADGYARAT----------GKVGVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTA--AIGQDAFQECDTVG 137 (587)
T ss_pred HHHHHHHHHh----------CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCcc--ccCCCCcccccHHH
Confidence 3566666652 22334555557777772 567889999999999997432210 00111122245566
Q ss_pred ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
+.+.+--...+|. ++.++.+.+.+|+..++.+ .||+.|++-.+
T Consensus 138 l~~~itk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 138 ITRPIVKHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HhcCCcceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 6666655566675 4558888999999999887 49999999765
No 199
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.05 E-value=0.73 Score=48.67 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=63.7
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...+..|-..+.|||+|.-.-.... .........|...+++.+--...+|. ++.++...
T Consensus 69 gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~--~~~~~~q~~d~~~l~~~vtk~s~~v~--~~~~~~~~ 141 (574)
T PRK06882 69 GCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNL--IGTDAFQECDMLGISRPVVKHSFIVK--NAEDIPST 141 (574)
T ss_pred eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCcccccchhhhhhcccceEEEeC--CHHHHHHH
Confidence 34455558887772 5578899999999999986443111 01111122455666666555566675 55688888
Q ss_pred HHHHHHHHHcC-CCCEEEEEEEe
Q 018048 305 AKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~-~gP~lIev~t~ 326 (361)
+.+|+..++.+ .||+.|++-.+
T Consensus 142 l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 142 IKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred HHHHHHHHhcCCCCCEEEecCHH
Confidence 99999888775 49999999765
No 200
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.97 E-value=0.82 Score=48.22 Aligned_cols=109 Identities=23% Similarity=0.214 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY 280 (361)
Q Consensus 201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~ 280 (361)
.-+|-|.+.+. +.-..+++..|=|.++. ...|..|-..+.|||+|.-.-... ..........|..
T Consensus 58 ~~~Adgyar~t----------g~~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~--~~~~~~~q~~d~~ 122 (561)
T PRK06048 58 AHAADGYARAT----------GKVGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRS--MIGNDAFQEADIT 122 (561)
T ss_pred HHHHHHHHHHh----------CCCeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCcc--ccCCCCccccchh
Confidence 34566666652 22344555568887772 567999999999999997532211 1111111224556
Q ss_pred hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
.+++.+--...+|+ ++.++...+.+|++.++.+ .||+.|++-.+
T Consensus 123 ~~~~~itk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 123 GITMPITKHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred hhccCcceEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 66666544455664 4558888999999988876 49999999653
No 201
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=91.65 E-value=0.55 Score=44.12 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccc--cccccccCCc
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDP 277 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is--~~~~~q~~~~ 277 (361)
++.+++|++++ +.++++.+-=.+++.- .|.|.+++-.++|+++++.|-. +-+ .+.+ ....
T Consensus 48 A~~~~~GAs~a-------------G~ra~t~ts~~Gl~lm--~e~l~~a~~~~~P~V~~~~~R~-g~~~g~~~~--~~q~ 109 (230)
T PF01855_consen 48 AMEAAIGASAA-------------GARAMTATSGPGLNLM--AEPLYWAAGTELPIVIVVVQRA-GPSPGLSTQ--PEQD 109 (230)
T ss_dssp HHHHHHHHHHT-------------T--EEEEEECCHHHHH--CCCHHHHHHTT--EEEEEEEB----SSSB--S--B-SH
T ss_pred HHHHHHHHHhc-------------CCceEEeecCCccccc--HhHHHHHHHcCCCEEEEEEECC-CCCCCCcCc--CChh
Confidence 45678888887 4444454444444422 5678999999999888888754 211 1111 1112
Q ss_pred chhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048 278 QIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA 334 (361)
Q Consensus 278 d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~ 334 (361)
|+.. ++-+|+. .+...++.+.++....|.+-+.+..-|+++-...++. .|+..
T Consensus 110 D~~~-~~d~~~~--vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~e 162 (230)
T PF01855_consen 110 DLMA-ARDSGWI--VLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSRE 162 (230)
T ss_dssp HHHH-TTTSS-E--EEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-EE
T ss_pred HHHH-HHhcCeE--EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCccc
Confidence 3222 2244554 5556788899999999999999999999998877664 25543
No 202
>PRK05858 hypothetical protein; Provisional
Probab=91.60 E-value=0.82 Score=48.01 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~ 281 (361)
-+|-|.+.+. +.-.++++..|=|..+. ...+..|...+.|||+|.-+-.... .........|...
T Consensus 56 ~~AdGyar~t----------g~~gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~ 120 (542)
T PRK05858 56 FAAEAWAKLT----------RVPGVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALR--WGMGSLQEIDHVP 120 (542)
T ss_pred HHHHHHHHhc----------CCCeEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCccc--CCCCCCcccchhh
Confidence 4566666661 12234444446766662 5689999999999998875433111 0111112245566
Q ss_pred ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
+++.+--...+|+. +.++.+.+.+|+..+... .||+.|++-.+
T Consensus 121 l~~~~tk~~~~v~~--~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 121 FVAPVTKFAATAQS--AENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhceEEEeCC--HHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 66666656667754 558888999999988875 58999998654
No 203
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=91.56 E-value=1.3 Score=46.23 Aligned_cols=108 Identities=16% Similarity=0.056 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-cCCcchh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-TSDPQIY 280 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-~~~~d~~ 280 (361)
-+|.|.+.+. +.-.++++..|=|..+ ....+..|...+.|||+|+-.-.+.. ..... ....|..
T Consensus 62 ~~Adgyar~t----------g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~--~~~~~~~~~~d~~ 126 (530)
T PRK07092 62 GMADGYAQAT----------GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSI--LPFEPFLAAVQAA 126 (530)
T ss_pred HHHHHHHHHh----------CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccc--cCccchhcccCHH
Confidence 3566776662 2334444556777775 26689999999999998876433211 11110 0123445
Q ss_pred hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
.+.+.+--...+| .++.++.+.+.+|+..++..+ ||+.|++-.+
T Consensus 127 ~l~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 127 ELPKPYVKWSIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred Hhhcccccceeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 5555554444455 456788889999999998875 8999999754
No 204
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=91.08 E-value=0.6 Score=49.37 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=63.8
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccc-----cccccCC-cchhhccccCCccEEEEeCCC
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMS-----HLRATSD-PQIYKKGPAFGMPGFHVDGMD 297 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~-----~~~q~~~-~d~~~~A~a~Gi~~~~Vdg~D 297 (361)
.++++..|=|..+. ...|..|...+.|||+|+-+-.+.. +.. ....... .|...+++.+--...+|+ +
T Consensus 77 gv~~~t~GPG~~N~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~--~ 151 (569)
T PRK08327 77 QAVMVHVDVGTANA---LGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIR--R 151 (569)
T ss_pred eEEEEecCHHHHHH---HHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccC--C
Confidence 45555568887772 5679999999999999987543211 100 0001112 355666665544555665 4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 298 VLKVREVAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 298 ~~~v~~al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
+.++..++.+|+..++.+ .||+.|++-.+
T Consensus 152 ~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 152 GDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 458888999999999876 69999999754
No 205
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.79 E-value=1.1 Score=47.32 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=62.3
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|.++. ...+..|...+.|||+|.-.=... ...+......|...+++.+--...+| +++.++..+
T Consensus 68 gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~--~~~~~~~q~~d~~~~~~~~tk~s~~v--~~~~~i~~~ 140 (563)
T PRK08527 68 GVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNS--LIGTDAFQEIDAVGISRPCVKHNYLV--KSIEELPRI 140 (563)
T ss_pred EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCcc--ccCCCCCcccchhhhhhcccceEEEc--CCHHHHHHH
Confidence 45555568887772 567889999999999987432210 00011112235555666554444455 456699999
Q ss_pred HHHHHHHHHcCC-CCEEEEEEEe
Q 018048 305 AKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~~-gP~lIev~t~ 326 (361)
+++|++.++.+. ||+.|++-.+
T Consensus 141 l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 141 LKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred HHHHHHHHhcCCCCcEEEEcCHh
Confidence 999999998765 8999998754
No 206
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=90.79 E-value=1.1 Score=47.63 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=62.2
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~ 303 (361)
.++++..|=|.++. ...|..|...+.|||+|.-.-. +.++. ......|...+++.+--...+|+ ++.++.+
T Consensus 78 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~~~~~~tk~~~~v~--~~~~i~~ 149 (585)
T CHL00099 78 GVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGT---DAFQEVDIFGITLPIVKHSYVVR--DARDISR 149 (585)
T ss_pred EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCccccchhhhhcCceeEEEEeC--CHHHHHH
Confidence 44555558887772 5578899999999999986432 11111 11112355555665544555665 5568888
Q ss_pred HHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 304 VAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 304 al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
.+++|++.++.+. ||+.|++-.+
T Consensus 150 ~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 150 IVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred HHHHHHHHHccCCCCeEEEecChh
Confidence 9999999888764 8999998754
No 207
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=90.70 E-value=0.85 Score=46.49 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~ 281 (361)
-+|-|.+.+. +.-.++++..|=|..+. .-.|..|-..+.|||+|.-.-.... .........|..+
T Consensus 52 ~mAdgyar~t----------g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~ 116 (432)
T TIGR00173 52 FFALGLAKAS----------GRPVAVVCTSGTAVANL---LPAVIEASYSGVPLIVLTADRPPEL--RGCGANQTIDQPG 116 (432)
T ss_pred HHHHHHHhcc----------CCCEEEEECCcchHhhh---hHHHHHhcccCCcEEEEeCCCCHHH--hCCCCCcccchhh
Confidence 3466666651 22344555557777772 4578899999999999986543111 0011111234445
Q ss_pred ccccCCccEEEEeCCC----HHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048 282 KGPAFGMPGFHVDGMD----VLKVREVAKEAIERARRGE-GPTLVECETY 326 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D----~~~v~~al~~Al~~ar~~~-gP~lIev~t~ 326 (361)
+++.+--...+|...+ +..+...+++|+..+..+. ||+.|++-.+
T Consensus 117 ~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 117 LFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred HHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 5555544455664433 1126678899998888754 9999999754
No 208
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.31 E-value=1.4 Score=46.77 Aligned_cols=96 Identities=15% Similarity=0.022 Sum_probs=60.6
Q ss_pred CceEEE--EECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048 224 DHVTLA--FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 301 (361)
Q Consensus 224 ~~~Vv~--~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v 301 (361)
+++.+| .+|=|..+. ...+..|-..+.|||+|.-+-... ..........|...+++.+--...+|+ ++.++
T Consensus 65 gk~~v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~--~~~~~~~Qe~d~~~l~~~~tk~~~~v~--~~~~~ 137 (578)
T PRK06546 65 GKLAVCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSA--QIGSGFFQETHPDRLFVECSGYCEMVS--SAEQA 137 (578)
T ss_pred CCceEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcc--ccCCCCccccChhhhcccceeeEeEeC--CHHHH
Confidence 334444 457777772 456889999999999998533211 000111112344455554433444554 45588
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 302 REVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 302 ~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
...+.+|++.+....||+.|++-.+
T Consensus 138 ~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 138 PRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChh
Confidence 8899999999998889999998754
No 209
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=90.00 E-value=1.4 Score=46.05 Aligned_cols=95 Identities=20% Similarity=0.050 Sum_probs=62.1
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a 304 (361)
.++++..|=|..+. ...+..|...+.|+|+|+-.-.... .........|...+++.+=-...++ .++.++.+.
T Consensus 63 gv~~~t~GpG~~n~---l~gl~~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~~~~~~tk~~~~i--~~~~~~~~~ 135 (539)
T TIGR02418 63 GVALVTSGPGCSNL---VTGLATANSEGDPVVAIGGQVKRAD--LLKLTHQSMDNVALFRPITKYSAEV--QDPDALSEV 135 (539)
T ss_pred eEEEECCCCCHhHH---HHHHHHHhhcCCCEEEEeCCCcccc--cccCcccccchhhhhhcceeeeeec--CCHHHHHHH
Confidence 45555567877772 5578899999999999987433111 0111122345555665543334445 466688888
Q ss_pred HHHHHHHHHcC-CCCEEEEEEEe
Q 018048 305 AKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 305 l~~Al~~ar~~-~gP~lIev~t~ 326 (361)
+.+|++.+... .||+.|++-.+
T Consensus 136 ~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 136 VANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred HHHHHHHHhcCCCCCEEEEcChh
Confidence 99999988876 48999998765
No 210
>PLN02573 pyruvate decarboxylase
Probab=89.72 E-value=1.5 Score=46.59 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=61.6
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-ccccc-ccc-cCCc---chhhccccCCccEEEEeCCC
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH-LRA-TSDP---QIYKKGPAFGMPGFHVDGMD 297 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~-~~q-~~~~---d~~~~A~a~Gi~~~~Vdg~D 297 (361)
-.++++..|=|.++. ...+..|...+.|||+|.-.-... ++... ..+ ...+ +..++++.+--...+|. +
T Consensus 79 ~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~--~ 153 (578)
T PLN02573 79 VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVIN--N 153 (578)
T ss_pred CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeC--C
Confidence 456666678887772 456888889999999998654321 11000 000 0001 12234444444445554 4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 298 VLKVREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 298 ~~~v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
+.++.+.+++|+..|+...||+.|++-.+
T Consensus 154 ~~~~~~~l~~A~~~A~~~~gPV~l~iP~D 182 (578)
T PLN02573 154 LEDAHELIDTAISTALKESKPVYISVSCN 182 (578)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence 55888889999999999889999999665
No 211
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=89.49 E-value=3.9 Score=41.51 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
++.+++|++++ +.++.+.+-=.+++-- .|.|.+|+-..+|+++++.|-. ++.+........|+
T Consensus 62 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm--~E~l~~aag~~lP~V~vv~~R~--~~~p~~i~~d~~D~ 124 (394)
T PRK08367 62 AISACVGASAA-------------GVRTFTATASQGLALM--HEVLFIAAGMRLPIVMAIGNRA--LSAPINIWNDWQDT 124 (394)
T ss_pred HHHHHHHHHhh-------------CCCeEeeeccchHHHH--hhHHHHHHHccCCEEEEECCCC--CCCCCCcCcchHHH
Confidence 46789999988 4445555544445522 7899999999999888885553 33221111011232
Q ss_pred hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC--CCCEEEEEEEecCCCCC
Q 018048 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYRFRGHS 332 (361)
Q Consensus 280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~--~gP~lIev~t~R~~gHs 332 (361)
. -.+-.|+ +.+-..++++.++-...|.+-+.+. .-|+++-...++. +|.
T Consensus 125 ~-~~rd~g~--~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~ 175 (394)
T PRK08367 125 I-SQRDTGW--MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THT 175 (394)
T ss_pred H-hccccCe--EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCc
Confidence 2 1223443 3344578899999999999988843 4799998888774 464
No 212
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=88.98 E-value=2.3 Score=42.65 Aligned_cols=109 Identities=19% Similarity=0.200 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
++.+++|++++ .-+..-...|.|-..| +|.|..|+-..+|+++++.+..-. ++.........|+
T Consensus 59 a~s~v~GA~~a------------Gar~~TaTSg~Gl~Lm---~E~l~~a~~~~~P~Vi~~~~R~~p-s~g~p~~~dq~D~ 122 (365)
T COG0674 59 AISAVIGASYA------------GARAFTATSGQGLLLM---AEALGLAAGTETPLVIVVAQRPLP-STGLPIKGDQSDL 122 (365)
T ss_pred HHHHHHHHHhh------------CcceEeecCCccHHHH---HHHHHHHHhccCCeEEEEeccCcC-CCcccccccHHHH
Confidence 56789999988 3455566667776665 788999999999999998888622 1111011112233
Q ss_pred hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
...-.+ |++-+... ++++.+.....|...|.+..-|+++-..-++
T Consensus 123 ~~~r~~-g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~ 167 (365)
T COG0674 123 MAARDT-GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFL 167 (365)
T ss_pred HHHHcc-CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccch
Confidence 222222 77777766 7778888888888888887889887654444
No 213
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=88.80 E-value=2.3 Score=43.23 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
++.+++|++++ +.++.+.+-=.+++-- .|.|.+|+-..+|+++++.+-+..-.++ .+...+|+
T Consensus 68 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm--~E~l~~aa~~~~P~V~~~~~R~~~~~~~--i~~d~~D~ 130 (407)
T PRK09622 68 AMSACVGAAAA-------------GGRVATATSSQGLALM--VEVLYQASGMRLPIVLNLVNRALAAPLN--VNGDHSDM 130 (407)
T ss_pred HHHHHHHHHhh-------------CcCEEeecCcchHHHH--hhHHHHHHHhhCCEEEEEeccccCCCcC--CCchHHHH
Confidence 46789999988 4445555555555532 7999999999999888888776221111 11122343
Q ss_pred hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC--CCCEEEEEEEec
Q 018048 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYR 327 (361)
Q Consensus 280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~--~gP~lIev~t~R 327 (361)
.. ++.-| .+.....+++++++....|.+-+.+. .-|+++-...++
T Consensus 131 ~~-~r~~g--~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 131 YL-SRDSG--WISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred HH-HhcCC--eEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence 33 22223 55667788999999999999988775 789998776654
No 214
>PRK06154 hypothetical protein; Provisional
Probab=88.46 E-value=1.9 Score=45.56 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=60.3
Q ss_pred ceEEE--EECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHH
Q 018048 225 HVTLA--FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (361)
Q Consensus 225 ~~Vv~--~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~ 302 (361)
++.+| ..|=|.++. ...|..|...+.|||+|+-...... . .+....|...+++.+--...+|+ ++.++.
T Consensus 81 ~~gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~-~---~~~~~~d~~~~~~~vtk~~~~v~--~~~~~~ 151 (565)
T PRK06154 81 RVGVFAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGS-T---DVAPNFESLRNYRHITKWCEQVT--LPDEVP 151 (565)
T ss_pred CCEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCccc-c---cCCCCcchhhhHhhcceeEEECC--CHHHHH
Confidence 44454 458887772 5679999999999999985443111 0 01111233344554433344554 555888
Q ss_pred HHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048 303 EVAKEAIERARRG-EGPTLVECETY 326 (361)
Q Consensus 303 ~al~~Al~~ar~~-~gP~lIev~t~ 326 (361)
+.+++|++.++.+ .||+.|++-.+
T Consensus 152 ~~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 152 ELMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHHHHHhcCCCceEEEecchH
Confidence 8999999999885 59999998765
No 215
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=86.57 E-value=3.1 Score=42.54 Aligned_cols=106 Identities=25% Similarity=0.197 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhc
Q 018048 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKK 282 (361)
Q Consensus 203 ~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~ 282 (361)
+|-|.+.+. ++..+|++..|-|+.+- ..-|.-|-.-+.|++.+- .+..-+.+..+.....|+..+
T Consensus 144 aAegYaR~s----------gKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgi 208 (675)
T KOG4166|consen 144 AAEGYARSS----------GKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGI 208 (675)
T ss_pred hhhhhhhhc----------CCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeee
Confidence 355666652 45678999999999982 234667777889966553 332222222222333455555
Q ss_pred cccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEE
Q 018048 283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECET 325 (361)
Q Consensus 283 A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t 325 (361)
-+++-=..+-| .|++++..-+.+|++.|-.++ ||+|+++.-
T Consensus 209 sRScTKwNvmV--kdVedlPrrI~EAFeiATSGRPGPVLVDlPK 250 (675)
T KOG4166|consen 209 SRSCTKWNVMV--KDVEDLPRRIEEAFEIATSGRPGPVLVDLPK 250 (675)
T ss_pred eeccceeheee--ecHHHhhHHHHHHhhhhccCCCCCeEeeCcH
Confidence 55543223333 578899999999999987764 899998843
No 216
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=86.57 E-value=0.35 Score=49.30 Aligned_cols=54 Identities=13% Similarity=-0.058 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHhcCcCC--CcccCCCcccccc--------ccccc--cCCccccccccHHHHHHHH
Q 018048 156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS--------KEHNL--LGGFAFIGEGIPVATGAAF 209 (361)
Q Consensus 156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~--------~~~~~--~~~~g~mG~~lP~AiGaA~ 209 (361)
+++|..++.++....++ +++.|+|++..|. .+.++ ..+.|+||+++|.|||+++
T Consensus 366 ~i~p~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 366 PLSELSLARALSQLLPEGAALFVGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred CccHHHHHHHHHHhCCCCCeEEEECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 47888999999988874 5667777754442 23444 4677999999999999986
No 217
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=86.13 E-value=1.4 Score=38.40 Aligned_cols=105 Identities=15% Similarity=0.250 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHH-hhhCCCCeEEEEEcCCcc-cccccccccC-C
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM-AALWKLPIVFVVENNLWA-IGMSHLRATS-D 276 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~t-A~~~~LPvi~VV~NN~y~-is~~~~~q~~-~ 276 (361)
+++.+.|+.+| .+.+.+.+- ..+.... ..+|.. -..+++|++.++..-++- -+.+ -|.+ .
T Consensus 54 g~GIcAGa~lA------------Gkk~ailmQ-nsGlGNs--iNal~SL~~ty~iPl~ml~ShRG~~~E~i~--AQVpmG 116 (172)
T COG4032 54 GVGICAGAYLA------------GKKPAILMQ-NSGLGNS--INALASLYVTYKIPLLMLASHRGVLKEGIE--AQVPMG 116 (172)
T ss_pred ceeeehhhhhc------------CCCcEEEEe-ccCcchH--HHHHHHHHHHhccchhhhhhccchhhcCCc--cccccc
Confidence 34567899998 233334333 2222222 223322 247899999999888732 1222 2222 2
Q ss_pred cchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048 277 PQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 277 ~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev 323 (361)
...-++-+..++|.+++.+.. +-+..+..+...+.+...|+.+-+
T Consensus 117 r~~~kiLe~~~lpt~t~~~p~--Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 117 RALPKILEGLELPTYTIIGPE--EALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhhHHHHhhcCCcccccCCHH--HHHHHHHHHHHHHHHcCCceEEEe
Confidence 234556667899999998775 667788999999999999987655
No 218
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=83.64 E-value=5.7 Score=41.67 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=54.6
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccc-----c--cccCCcchhhccccCCccEEEEeCCC
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH-----L--RATSDPQIYKKGPAFGMPGFHVDGMD 297 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~-----~--~q~~~~d~~~~A~a~Gi~~~~Vdg~D 297 (361)
.++++..|=|+++. ...|..|-..+.|||+|.-.-... ...+ + ......++.++.+..-.....++
T Consensus 65 gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~~--- 137 (539)
T TIGR03393 65 AALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGAPGTA-AQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVLT--- 137 (539)
T ss_pred eEEEEecCccHHHH---hhHHHHHhhccCCEEEEECCCCcc-hhhcCceeeeecCCCchHHHHHHhhceEEEEEEeC---
Confidence 45556669988882 446888999999999998643311 0000 0 00001122233333222222332
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 298 VLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 298 ~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
+.++.+.+.+|++.|....||+.|++-.+=
T Consensus 138 ~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv 167 (539)
T TIGR03393 138 EQNATAEIDRVITTALRERRPGYLMLPVDV 167 (539)
T ss_pred hhhhHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 234455677788777777899999997754
No 219
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=83.61 E-value=6.2 Score=42.11 Aligned_cols=162 Identities=19% Similarity=0.174 Sum_probs=91.5
Q ss_pred CCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCcccccccc
Q 018048 122 YNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI 201 (361)
Q Consensus 122 ~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~l 201 (361)
..|.||++.|+..+ +--++..|.. -|..+++..|....+. +|-...|.. .-. .++
T Consensus 5 ~~GneA~A~g~~~a---g~~~~~~YPi--------TP~t~i~e~l~~~~~~-----~~~~~~~~~-----~E~----~a~ 59 (595)
T TIGR03336 5 LLGNEAIARGALEA---GVGVAAAYPG--------TPSSEITDTLAKVAKR-----AGVYFEWSV-----NEK----VAV 59 (595)
T ss_pred ecHHHHHHHHHHHc---CCEEEEecCC--------CCHHHHHHHHHHhhhh-----ccEEEEECc-----CHH----HHH
Confidence 45999888766543 4335555642 2444666666544331 111111111 011 134
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhh--hCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA--LWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~--~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
.+|+|+++| +.++++.+-=.+++-- .|.|..++ ...+|+++++-|.. +-+..+..| .|.
T Consensus 60 ~~~~GAs~a-------------G~ra~t~ts~~Gl~~~--~e~l~~~~~~g~~~~iV~~~~~~~-gp~~~~~~q---~d~ 120 (595)
T TIGR03336 60 EVAAGAAWS-------------GLRAFCTMKHVGLNVA--ADPLMTLAYTGVKGGLVVVVADDP-SMHSSQNEQ---DTR 120 (595)
T ss_pred HHHHHHHhc-------------CcceEEEccCCchhhh--HHHhhhhhhhcCcCceEEEEccCC-CCccchhhH---hHH
Confidence 589999998 4445555544445421 44554554 33677777777653 322111122 232
Q ss_pred hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (361)
Q Consensus 280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (361)
. .++-.+++ ..+-.+++++++....|++-+.+..-|++|-... ..+|+
T Consensus 121 ~-~~~~~~~~--vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~ 168 (595)
T TIGR03336 121 H-YAKFAKIP--CLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHM 168 (595)
T ss_pred H-HHHhcCCe--EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccc
Confidence 1 23345777 4556678899999999999999999999998865 34454
No 220
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=83.39 E-value=3.2 Score=49.60 Aligned_cols=108 Identities=17% Similarity=0.084 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~ 281 (361)
=+|.|.+.+. +.-.+++|..|=|..+. +-++..|..-+.|+|+|.-+-....- ........|...
T Consensus 353 fmAdGyAR~T----------gkpgV~i~TsGPG~tN~---l~av~eA~~d~vPlLvItgd~p~~~~--~~ga~Q~iDq~~ 417 (1655)
T PLN02980 353 FHALGYARGS----------LKPAVVITSSGTAVSNL---LPAVVEASQDFVPLLLLTADRPPELQ--DAGANQAINQVN 417 (1655)
T ss_pred HHHHHHHHHh----------CCCEEEEEeCcHHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHh--cCCCCcccchhh
Confidence 4567777662 23344555557776662 66899999999999999876542210 011111234555
Q ss_pred ccccCCccEEEEeCCCH----HHHHHHHHHHHHHHHcCC-CCEEEEEE
Q 018048 282 KGPAFGMPGFHVDGMDV----LKVREVAKEAIERARRGE-GPTLVECE 324 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D~----~~v~~al~~Al~~ar~~~-gP~lIev~ 324 (361)
+++.+--..++|...+- ..+...+++|+..++.+. ||+.|++-
T Consensus 418 lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 418 HFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred HHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 55555555556644331 013467888888888874 99999997
No 221
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=82.81 E-value=4.6 Score=35.93 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=53.3
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCC-CceEEEEECCCcccC---cchHHHHH-HhhhCCCCeEEEEEcCCccccccccccc
Q 018048 200 GIPVATGAAFTSKYRREVLKEADC-DHVTLAFFGDGTCNN---GQFFECLN-MAALWKLPIVFVVENNLWAIGMSHLRAT 274 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~-~~~Vv~~~GDGs~~~---g~~~eeL~-tA~~~~LPvi~VV~NN~y~is~~~~~q~ 274 (361)
.+..|.|.|++ ++ ..+++..++| |.. -...+.+. .....++|+. |+..-+++.+..-....
T Consensus 60 ~vg~a~GlA~~-----------G~~~~~~~~~f~~--F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~ 125 (178)
T PF02779_consen 60 MVGMAAGLALA-----------GGLRPPVESTFAD--FLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHH 125 (178)
T ss_dssp HHHHHHHHHHH-----------SSSEEEEEEEEGG--GGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTS
T ss_pred ccceeeeeeec-----------ccccceeEeeccc--cccccchhhhhhhhhhhhcccceec-ceeecCccccccccccc
Confidence 35678888887 42 3445555554 443 11133333 6778899988 66555444333222222
Q ss_pred CCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHc--CCCCEEEEE
Q 018048 275 SDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARR--GEGPTLVEC 323 (361)
Q Consensus 275 ~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~--~~gP~lIev 323 (361)
+..|..-+ + .+|+++| .-.|+.++.. +++++.+ .++|++|-.
T Consensus 126 s~~d~~~~-~--~iPg~~v~~Psd~~e~~~----~l~~a~~~~~~~P~~ir~ 170 (178)
T PF02779_consen 126 SIEDEAIL-R--SIPGMKVVVPSDPAEAKG----LLRAAIRRESDGPVYIRE 170 (178)
T ss_dssp SSSHHHHH-H--TSTTEEEEE-SSHHHHHH----HHHHHHHSSSSSEEEEEE
T ss_pred cccccccc-c--cccccccccCCCHHHHHH----HHHHHHHhCCCCeEEEEe
Confidence 23333332 2 3555543 3456666554 4445555 679999865
No 222
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=82.30 E-value=21 Score=34.31 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=59.2
Q ss_pred eEEEEECCCc--ccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccccc----C-CcchhhccccCCccEEEEeCCC
Q 018048 226 VTLAFFGDGT--CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRAT----S-DPQIYKKGPAFGMPGFHVDGMD 297 (361)
Q Consensus 226 ~Vv~~~GDGs--~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~----~-~~d~~~~A~a~Gi~~~~Vdg~D 297 (361)
.++.++.||. ++.+..-..+.-|.+.++-+++|+.+|. ..-|.....+. . .+.+......|+.|++.|= .|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 7777655667888888999888888774 22232211111 1 1155667778999999764 46
Q ss_pred HHHHHHHHHHHHHH
Q 018048 298 VLKVREVAKEAIER 311 (361)
Q Consensus 298 ~~~v~~al~~Al~~ 311 (361)
+.++.+.+..++..
T Consensus 245 ~~~lp~~l~~~lrq 258 (266)
T cd01460 245 LNQLPSVLSDALRQ 258 (266)
T ss_pred hhHhHHHHHHHHHH
Confidence 77888888777754
No 223
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=81.67 E-value=5.4 Score=42.83 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=49.6
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEe-CCCHHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVR 302 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v~ 302 (361)
-++++++ =+.|.+-.+-|-.+.++.+++||++++...++. +..-.......|++- --.+|+++|= -.|+.++.
T Consensus 376 ~~Pvv~~--~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~dia~---lr~iPgl~V~~Psd~~e~~ 449 (617)
T TIGR00204 376 YKPFVAI--YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAFDISY---LRCIPNMVIMAPSDENELR 449 (617)
T ss_pred CEEEEEe--cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccchHHHH---HhcCCCcEEEeeCCHHHHH
Confidence 4455554 456775433344567789999999998877642 221111112233332 2356777553 34555655
Q ss_pred HHHHHHHHHHHcC-CCCEEEEE
Q 018048 303 EVAKEAIERARRG-EGPTLVEC 323 (361)
Q Consensus 303 ~al~~Al~~ar~~-~gP~lIev 323 (361)
..++ .+.+. ++|++|-.
T Consensus 450 ~~l~----~a~~~~~~Pv~ir~ 467 (617)
T TIGR00204 450 QMLY----TGYHYDDGPIAVRY 467 (617)
T ss_pred HHHH----HHHhCCCCCEEEEE
Confidence 4444 44443 48998854
No 224
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=81.39 E-value=5.2 Score=43.28 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=47.5
Q ss_pred cccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHH
Q 018048 235 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERAR 313 (361)
Q Consensus 235 s~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar 313 (361)
.|.+ ...+.+.+++..++||++|....+++++..-....+ +.+++---.+|.+.| .-.|..++.. +++++.
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~---iedia~lr~iPn~~v~~PaD~~E~~~----~~~~a~ 501 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQP---IEQLASLRAIPNLSVWRPCDGNETAA----AWKYAL 501 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCC---HHHHHHHhcCCCCEEEeeCCHHHHHH----HHHHHH
Confidence 5553 346778888999999999998877655432111112 333322234666654 3345555544 444444
Q ss_pred -cCCCCEEEEE
Q 018048 314 -RGEGPTLVEC 323 (361)
Q Consensus 314 -~~~gP~lIev 323 (361)
..++|++|-.
T Consensus 502 ~~~~gP~~irl 512 (653)
T TIGR00232 502 ESQDGPTALIL 512 (653)
T ss_pred hcCCCcEEEEE
Confidence 4678988854
No 225
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=79.54 E-value=7 Score=34.76 Aligned_cols=88 Identities=19% Similarity=0.118 Sum_probs=44.2
Q ss_pred CceEEEEECCCcccCcchHHHH-HHhhhC--------CCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEE-
Q 018048 224 DHVTLAFFGDGTCNNGQFFECL-NMAALW--------KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV- 293 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL-~tA~~~--------~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~V- 293 (361)
+.++++.+.=+.|..- .++-+ +.++.+ ++||+++...-+++.+-+++ ...++ .+.+ .+|++.|
T Consensus 67 G~~pi~~~~~a~Fl~r-a~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th---s~~~~-a~lr--~iPg~~V~ 139 (167)
T cd07036 67 GLRPIVEIMFADFALP-AFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH---SQSLE-AWFA--HIPGLKVV 139 (167)
T ss_pred CCEEEEEeehHHHHHH-HHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh---hhhHH-HHHh--cCCCCEEE
Confidence 3445544333445432 24444 344433 69999998544433222221 22332 3333 4566654
Q ss_pred eCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 018048 294 DGMDVLKVREVAKEAIERARRGEGPTLVE 322 (361)
Q Consensus 294 dg~D~~~v~~al~~Al~~ar~~~gP~lIe 322 (361)
.-.|+.+... +++++.+.++|+++-
T Consensus 140 ~Psd~~e~~~----~l~~~~~~~~P~~~~ 164 (167)
T cd07036 140 APSTPYDAKG----LLKAAIRDDDPVIFL 164 (167)
T ss_pred eeCCHHHHHH----HHHHHHhCCCcEEEE
Confidence 3346556544 455555667999874
No 226
>PTZ00089 transketolase; Provisional
Probab=79.51 E-value=7.1 Score=42.29 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=55.7
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeC-CCHHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVLKVR 302 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg-~D~~~v~ 302 (361)
-+++++.+. .|.+ ..++.+..++..++||+||+...+.+++..-..-.+ +.+++---.+|.+.|=. .|..++
T Consensus 428 ~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~---iedia~lR~iPn~~V~~PaD~~E~- 500 (661)
T PTZ00089 428 FIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQP---VETLALLRATPNLLVIRPADGTET- 500 (661)
T ss_pred CeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCccc---HHHHHHHhcCCCcEEEecCCHHHH-
Confidence 356666554 6765 447779999999999999998887555432111112 33333333577776533 455554
Q ss_pred HHHHHHHHHHH-cCCCCEEEEE
Q 018048 303 EVAKEAIERAR-RGEGPTLVEC 323 (361)
Q Consensus 303 ~al~~Al~~ar-~~~gP~lIev 323 (361)
..+++.+. ..++|+.|-.
T Consensus 501 ---~~~l~~al~~~~gP~~irl 519 (661)
T PTZ00089 501 ---SGAYALALANAKTPTILCL 519 (661)
T ss_pred ---HHHHHHHHHcCCCCEEEEe
Confidence 44555555 4569999875
No 227
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=74.23 E-value=14 Score=36.99 Aligned_cols=99 Identities=22% Similarity=0.178 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE-CCCcccCcchHHHHHHhhhCC--------CCeEEEEEcCCccccc-c
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWK--------LPIVFVVENNLWAIGM-S 269 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~-GDGs~~~g~~~eeL~tA~~~~--------LPvi~VV~NN~y~is~-~ 269 (361)
.+..|.|.|++ ..++++++. .| |.+-.+-|-.+.++.++ +||+++..+ +...+. +
T Consensus 86 ~vg~AaGlA~~------------G~~P~v~~~~~~--f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~G~ 150 (356)
T PLN02683 86 FTGIGVGAAYA------------GLKPVVEFMTFN--FSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGVGA 150 (356)
T ss_pred HHHHHHHHHHC------------CCEEEEEEehhh--HHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCCCC
Confidence 34566677665 345555543 22 33223334456667666 999999877 533332 1
Q ss_pred cccccCCcchhhccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048 270 HLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 270 ~~~q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIev 323 (361)
++ ...+. .+.+ .+|+++|= -.|..++.. +++++.+.++|++|-.
T Consensus 151 tH---~~~~~-a~lr--~iPnl~V~~Pad~~e~~~----~l~~a~~~~gPv~ir~ 195 (356)
T PLN02683 151 QH---SQCFA-AWYS--SVPGLKVLAPYSSEDARG----LLKAAIRDPDPVVFLE 195 (356)
T ss_pred cc---ccCHH-HHHh--cCCCCEEEEeCCHHHHHH----HHHHHHhCCCcEEEEE
Confidence 22 12222 3333 46666543 345555544 4555556678999853
No 228
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=73.37 E-value=13 Score=38.64 Aligned_cols=99 Identities=21% Similarity=0.175 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhh--------hCCCCeEEEEEcCCccccccccc
Q 018048 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA--------LWKLPIVFVVENNLWAIGMSHLR 272 (361)
Q Consensus 201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~--------~~~LPvi~VV~NN~y~is~~~~~ 272 (361)
+..|.|+|++ ..++++.+..= .|.+-.+-|-.|.++ .+++||+|+..|-++.....
T Consensus 202 vg~AaGlA~~------------G~rPiv~~~~~-~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~--- 265 (464)
T PRK11892 202 AGIGVGAAFA------------GLKPIVEFMTF-NFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA--- 265 (464)
T ss_pred HHHHHHHHhC------------CCEEEEEEehH-HHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---
Confidence 4567777775 34555554321 233333345556677 88999999988766322111
Q ss_pred ccCCcchhhccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 018048 273 ATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVE 322 (361)
Q Consensus 273 q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIe 322 (361)
+.+..| ..+.+ .+|+++|= -.|..+... .++.+.+.++|+++-
T Consensus 266 hhs~~d-~a~~~--~iPgl~V~~P~d~~d~~~----ll~~ai~~~~Pv~il 309 (464)
T PRK11892 266 QHSQDY-AAWYS--HIPGLKVVAPYSAADAKG----LLKAAIRDPNPVIFL 309 (464)
T ss_pred ccccCH-HHHHh--hCCCCEEEEeCCHHHHHH----HHHHHhhCCCcEEEE
Confidence 222223 23332 56666543 345555544 444555567899873
No 229
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=72.22 E-value=15 Score=35.81 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHH-HHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL-NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL-~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
++.|.|.|++ ...+.++ +=+.|.++-.||-+ |+.+..++||.+|+.+-++..+..-.. .--+
T Consensus 62 vg~AAGLA~~------------Gk~Pfv~--tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~s---Hq~~ 124 (312)
T COG3958 62 VGTAAGLALA------------GKKPFVS--TFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSS---HQAL 124 (312)
T ss_pred HHHHHHHHhc------------CCCceee--chHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCcc---chhH
Confidence 3566676665 3444444 34677775445555 555678999999999998655432111 1124
Q ss_pred hhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048 280 YKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 280 ~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~gP~lIev 323 (361)
.++|--=|+|...| .-.|.. .+++++.++.+-+||+-+.+
T Consensus 125 EDiaimR~lpn~~V~~P~D~v----~~~~i~~~~~~~~GP~Y~Rl 165 (312)
T COG3958 125 EDIAIMRGLPNMTVIAPADAV----ETRAILDQIADYKGPVYMRL 165 (312)
T ss_pred HHHHHHhcCCCceEEccCcHH----HHHHHHHHHHhcCCCEEEEe
Confidence 55555557777755 344533 45777778888899998755
No 230
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=71.54 E-value=11 Score=39.61 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK 281 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~ 281 (361)
-+|-|.+.+. +.-.++++..|=|.++. .-++..|-..+.|||+|.-.-... ..........|...
T Consensus 61 ~aAdgyar~t----------g~~~v~~vt~GpG~~N~---l~~i~~A~~~~~Pvl~IsG~~~~~--~~~~~~~q~~d~~~ 125 (568)
T PRK07449 61 FLALGLAKAS----------KRPVAVIVTSGTAVANL---YPAVIEAGLTGVPLIVLTADRPPE--LRDCGANQAIDQLG 125 (568)
T ss_pred HHHHHHHHhh----------CCCEEEEECCccHHHhh---hHHHHHHhhcCCcEEEEECCCCHH--HhcCCCCceecHhh
Confidence 4566666651 22245566668888873 557999999999999997543211 00111111234444
Q ss_pred ccccCCccEEEEeCCCH--HHHHHHHHHHHHH---HHc-CCCCEEEEEEEe
Q 018048 282 KGPAFGMPGFHVDGMDV--LKVREVAKEAIER---ARR-GEGPTLVECETY 326 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D~--~~v~~al~~Al~~---ar~-~~gP~lIev~t~ 326 (361)
+.+.+- ..++.-.+. ..+...+..+++. +.. ..||+.|++-.+
T Consensus 126 ~~~~~t--~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 126 LFGSYP--FTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred Hhhhhh--hhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 444443 233332221 1122122223333 333 469999999754
No 231
>PRK05899 transketolase; Reviewed
Probab=71.03 E-value=14 Score=39.68 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=51.4
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccc--ccccccCCcchhhccccCCccEEEE-eCCCHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLK 300 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~--~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~ 300 (361)
.+++++.+ ..|. .-.++.+.+.+..++||+++....++..+. +++ | .+.+++---.+|+++| .-.|..+
T Consensus 392 ~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q----~~edia~~r~iP~~~V~~P~d~~e 463 (624)
T PRK05899 392 FIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-Q----PVEQLASLRAIPNLTVIRPADANE 463 (624)
T ss_pred CeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-c----cHHHHHHHHhCCCcEEEeCCCHHH
Confidence 44444433 2444 234777888888999999999887754432 222 2 2333333335677654 3446556
Q ss_pred HHHHHHHHHHHHHcC-CCCEEEEE
Q 018048 301 VREVAKEAIERARRG-EGPTLVEC 323 (361)
Q Consensus 301 v~~al~~Al~~ar~~-~gP~lIev 323 (361)
+.. +++++.+. ++|++|-.
T Consensus 464 ~~~----~l~~a~~~~~~P~~ir~ 483 (624)
T PRK05899 464 TAA----AWKYALERKDGPSALVL 483 (624)
T ss_pred HHH----HHHHHHHcCCCCEEEEE
Confidence 544 44455555 79998877
No 232
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=70.81 E-value=7.5 Score=38.70 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=66.8
Q ss_pred CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccccccccCCcchhhccccCCccEEEEeCCCHHH
Q 018048 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLK 300 (361)
Q Consensus 222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~ 300 (361)
.++.+-+|+---|-.... ....|-.|..-.+||+.|- .+ +- .-...+.....|++++|+..---. |.-.++.-
T Consensus 65 ~~gnigvcigtsgpagtd-mitglysa~adsipilcit--gq-aprarl~kedfqavdi~~ia~pv~kwa--vtv~epal 138 (592)
T COG3960 65 TAGNIGVCIGTSGPAGTD-MITGLYSASADSIPILCIT--GQ-APRARLHKEDFQAVDIEAIAKPVSKWA--VTVREPAL 138 (592)
T ss_pred cCCceEEEecCCCCCccc-hhhhhhhcccccccEEEec--CC-CchhhhchhhhhhhhHHHhhhhhhhhh--hhhcchhh
Confidence 355666666544444432 2667888888888877553 22 10 000112234467777765432222 33346667
Q ss_pred HHHHHHHHHHHHHcC-CCCEEEEEEEecCCCCCCCCCCCC
Q 018048 301 VREVAKEAIERARRG-EGPTLVECETYRFRGHSLADPDEL 339 (361)
Q Consensus 301 v~~al~~Al~~ar~~-~gP~lIev~t~R~~gHs~~Dp~~y 339 (361)
|..+++.|+.-.|.+ .||+||++..+-...--+.||+.|
T Consensus 139 vp~v~qkafhlmrs~rpgpvlidlp~dvq~aeiefd~d~y 178 (592)
T COG3960 139 VPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDMY 178 (592)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEecccceEEEEEecCcccc
Confidence 888899999888875 499999987655444445677665
No 233
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=70.77 E-value=16 Score=39.46 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=49.1
Q ss_pred CceEEEEECCCcccCcchHHHH-HHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEe-CCCHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECL-NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKV 301 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL-~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v 301 (361)
-+++++++. .|.+- .++.+ +.++..++||++++..-++. +..-..-....|++-+ -.+|++.|= -.|..++
T Consensus 385 ~~P~v~~f~--~Fl~r-a~dQI~~~~a~~~lpv~~v~~~~G~~-g~dG~THq~~~dia~l---r~iPnl~V~~Psd~~e~ 457 (641)
T PRK12571 385 LKPFCAVYS--TFLQR-GYDQLLHDVALQNLPVRFVLDRAGLV-GADGATHAGAFDLAFL---TNLPNMTVMAPRDEAEL 457 (641)
T ss_pred CEEEEEehH--HHHHH-HHHHHHHHHhhcCCCeEEEEECCCcC-CCCCccccccHHHHHH---hcCCCCEEEeeCCHHHH
Confidence 455666544 46653 34444 66889999999998655532 2111011112333332 256776553 3465565
Q ss_pred HHHHHHHHHHHHc-CCCCEEEEEE
Q 018048 302 REVAKEAIERARR-GEGPTLVECE 324 (361)
Q Consensus 302 ~~al~~Al~~ar~-~~gP~lIev~ 324 (361)
...++. +.+ .++|++|-..
T Consensus 458 ~~~l~~----a~~~~~~P~~ir~~ 477 (641)
T PRK12571 458 RHMLRT----AAAHDDGPIAVRFP 477 (641)
T ss_pred HHHHHH----HHhCCCCcEEEEEe
Confidence 554444 444 4799998553
No 234
>PLN02790 transketolase
Probab=70.71 E-value=16 Score=39.51 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=46.2
Q ss_pred HHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeC-CCHHHHHHHHHHHHHHHHc-CCCCE
Q 018048 242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVLKVREVAKEAIERARR-GEGPT 319 (361)
Q Consensus 242 ~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg-~D~~~v~~al~~Al~~ar~-~~gP~ 319 (361)
.+.+..++..++||+||+...+.+.+..-....+ +.+++---.+|.+.|=. .|..++ ..+++.+.. .++|+
T Consensus 433 ~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~---iedla~lR~iPnl~V~~PaD~~E~----~~~l~~al~~~~gP~ 505 (654)
T PLN02790 433 RAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQP---IEHLASLRAMPNILMLRPADGNET----AGAYKVAVTNRKRPT 505 (654)
T ss_pred HHHHHHHHhcCCCeEEEEECCceeecCCCCCccc---HHHHHHhcCCCCcEEEeCCCHHHH----HHHHHHHHHcCCCCE
Confidence 5677888999999999998887555432111112 34444344577776533 455554 445555544 56898
Q ss_pred EEEE
Q 018048 320 LVEC 323 (361)
Q Consensus 320 lIev 323 (361)
.|-.
T Consensus 506 ~irl 509 (654)
T PLN02790 506 VLAL 509 (654)
T ss_pred EEEe
Confidence 8865
No 235
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=70.24 E-value=19 Score=38.39 Aligned_cols=91 Identities=15% Similarity=0.206 Sum_probs=48.8
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEE-eCCCHHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVR 302 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~ 302 (361)
.++++.+ =..|..-.+-|-.+.++..++||+++....++. +..-.......|++-+ -.+|++.| .-.|+.++.
T Consensus 345 ~~p~~~~--f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~-g~dG~tH~~~edia~l---r~iP~l~V~~Psd~~e~~ 418 (580)
T PRK05444 345 LKPVVAI--YSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLV-GADGPTHQGAFDLSYL---RCIPNMVIMAPSDENELR 418 (580)
T ss_pred CeeEEEe--eHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcC-CCCCccccccHHHHHH---hcCCCCEEEeeCCHHHHH
Confidence 4445544 445664333345566788999999999876642 2100011122333332 24666654 345666665
Q ss_pred HHHHHHHHHHHcCCCCEEEEE
Q 018048 303 EVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 303 ~al~~Al~~ar~~~gP~lIev 323 (361)
..++.|++ ..++|++|..
T Consensus 419 ~~l~~a~~---~~~~P~~ir~ 436 (580)
T PRK05444 419 QMLYTALA---YDDGPIAIRY 436 (580)
T ss_pred HHHHHHHh---CCCCcEEEEe
Confidence 54454442 2378998855
No 236
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=67.39 E-value=22 Score=38.87 Aligned_cols=92 Identities=8% Similarity=-0.060 Sum_probs=52.8
Q ss_pred CCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeC-CCHHHH
Q 018048 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVLKV 301 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg-~D~~~v 301 (361)
.-++++++. ..|.+=.+-|-.+-++.+++||+|++..-++.. ..-.......|++-+ -.+|+++|=. .|..++
T Consensus 446 G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg-~DG~TH~g~~Dia~l---r~IPnm~V~aPsD~~El 519 (701)
T PLN02225 446 GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVG-SDGPVQCGAFDIAFM---SSLPNMIAMAPADEDEL 519 (701)
T ss_pred CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCC-CCCccccccHHHHHH---hcCCCCEEEeeCCHHHH
Confidence 457788877 468765555556668899999999987644321 100011122343332 2467776533 465665
Q ss_pred HHHHHHHHHHHHcCCCCEEEEE
Q 018048 302 REVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 302 ~~al~~Al~~ar~~~gP~lIev 323 (361)
...++.|+. ..++|++|-.
T Consensus 520 ~~mL~~A~~---~~~gPv~IR~ 538 (701)
T PLN02225 520 VNMVATAAY---VTDRPVCFRF 538 (701)
T ss_pred HHHHHHHHh---cCCCCEEEEe
Confidence 554444332 3568999865
No 237
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=66.79 E-value=20 Score=38.87 Aligned_cols=90 Identities=12% Similarity=0.136 Sum_probs=47.7
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeC-CCHHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVLKVR 302 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg-~D~~~v~ 302 (361)
-+++++++ +.|.+-.+-|-.+.++..++||+|++...++. +..-.......|++- .-.+|++.|-. .|+.++.
T Consensus 423 ~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~-g~dG~TH~~~~Dia~---lr~iPnl~V~~Psd~~E~~ 496 (641)
T PLN02234 423 LKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLM-GADGPTHCGAFDVTF---MACLPNMIVMAPSDEAELF 496 (641)
T ss_pred CeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccC-CCCCccccccHHHHH---HhcCCCCEEEeeCCHHHHH
Confidence 45555553 45654333444567789999999999777632 211111111233322 22467665533 4655655
Q ss_pred HHHHHHHHHHHcCCCCEEEE
Q 018048 303 EVAKEAIERARRGEGPTLVE 322 (361)
Q Consensus 303 ~al~~Al~~ar~~~gP~lIe 322 (361)
..++.|+. ..++|++|-
T Consensus 497 ~~l~~a~~---~~~~Pv~ir 513 (641)
T PLN02234 497 NMVATAAA---IDDRPSCFR 513 (641)
T ss_pred HHHHHHHh---CCCCCEEEE
Confidence 44444332 345899883
No 238
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=66.24 E-value=50 Score=38.37 Aligned_cols=113 Identities=18% Similarity=0.081 Sum_probs=66.7
Q ss_pred ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
++.+++|++.+ +.++..++-=.++.-- .|.|-.++-..+|+|++|.+-.+. +..........|+
T Consensus 63 A~~av~GA~~a-------------Gara~T~TSs~GL~LM--~e~l~~~ag~~~P~Vi~va~R~~~-~~~~~i~~dh~Dv 126 (1165)
T TIGR02176 63 AAGAVHGALQT-------------GALTTTFTASQGLLLM--IPNMYKIAGELLPCVFHVSARAIA-AHALSIFGDHQDV 126 (1165)
T ss_pred HHHHHHhHhhc-------------CCCEEEecChhHHHHH--HHHHHHHHhccCCEEEEEecCCCC-CCCCccCCCchHH
Confidence 35667787766 3445555444444422 777866666789988888876432 1110000011232
Q ss_pred hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS 332 (361)
Q Consensus 280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs 332 (361)
..++.-|+ +.+-..++.++++....|..-|.+...|+++-..-++. +|.
T Consensus 127 -~~~R~~G~--ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 127 -MAARQTGF--AMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred -HHhhcCCe--EEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 22344455 55556788888888888888888888898876654442 454
No 239
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=66.10 E-value=20 Score=38.31 Aligned_cols=89 Identities=11% Similarity=-0.011 Sum_probs=49.5
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEE-eCCCHHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVR 302 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~ 302 (361)
-+++++.+.+ |.+-.+-|-.+.++..++||+|++..-++....+++. ...|++-+ -.+|++.| .-.|..++.
T Consensus 344 ~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~--~~~Dia~l---r~iPnl~V~~P~d~~e~~ 416 (581)
T PRK12315 344 ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHL--GIFDIPMI---SNIPNLVYLAPTTKEELI 416 (581)
T ss_pred CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCcccc--ccHHHHHH---hcCCCCEEEecCCHHHHH
Confidence 4566655554 5543333345557889999999998555332112211 22333322 35777765 345656655
Q ss_pred HHHHHHHHHHHcC-CCCEEEEE
Q 018048 303 EVAKEAIERARRG-EGPTLVEC 323 (361)
Q Consensus 303 ~al~~Al~~ar~~-~gP~lIev 323 (361)
.. ++.+.+. ++|++|-.
T Consensus 417 ~~----l~~a~~~~~gP~~ir~ 434 (581)
T PRK12315 417 AM----LEWALTQHEHPVAIRV 434 (581)
T ss_pred HH----HHHHHhCCCCcEEEEE
Confidence 44 4444443 69999866
No 240
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=65.11 E-value=29 Score=37.87 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=50.6
Q ss_pred CCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEe-CCCHHHH
Q 018048 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKV 301 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v 301 (361)
.-+++++++ ..|.+=.+-|-++-++..++||+|++...++. +..-.......|++-+ -.+|++.|= -.|..++
T Consensus 421 G~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~v-g~dG~TH~~~~Dia~l---r~iPnl~V~~Psd~~E~ 494 (677)
T PLN02582 421 GLKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLV-GADGPTHCGAFDVTYM---ACLPNMVVMAPSDEAEL 494 (677)
T ss_pred CCeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcc-cCCCCcccccHHHHHH---hcCCCCEEEeeCCHHHH
Confidence 356666664 35665444455677789999999998877642 2111111122333322 246666553 3455555
Q ss_pred HHHHHHHHHHHHc-CCCCEEEEE
Q 018048 302 REVAKEAIERARR-GEGPTLVEC 323 (361)
Q Consensus 302 ~~al~~Al~~ar~-~~gP~lIev 323 (361)
... ++++.. .++|++|..
T Consensus 495 ~~~----l~~al~~~~gPv~IR~ 513 (677)
T PLN02582 495 FHM----VATAAAIDDRPSCFRY 513 (677)
T ss_pred HHH----HHHHHhCCCCCEEEEE
Confidence 444 444443 358998854
No 241
>PRK12753 transketolase; Reviewed
Probab=63.97 E-value=26 Score=38.00 Aligned_cols=89 Identities=19% Similarity=0.091 Sum_probs=54.1
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeC-CCHHHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVLKVRE 303 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg-~D~~~v~~ 303 (361)
.++++.+ +.|.. ..++.+.+++..++||++|....+++++..-....+ +.+++---.+|.+.|=. -|..++
T Consensus 428 ~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~---iedla~lR~iPn~~v~~PaD~~E~-- 499 (663)
T PRK12753 428 VPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQP---VEQLASLRLTPNFSTWRPCDQVEA-- 499 (663)
T ss_pred eEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCccccc---HHHHHHHhcCCCCEEEccCCHHHH--
Confidence 4444444 36654 458888889999999999999887666442221112 33444334577766533 354454
Q ss_pred HHHHHHHHHHc-CCCCEEEEE
Q 018048 304 VAKEAIERARR-GEGPTLVEC 323 (361)
Q Consensus 304 al~~Al~~ar~-~~gP~lIev 323 (361)
+.+++.+.+ .++|+.|-+
T Consensus 500 --~~~~~~al~~~~gP~~irl 518 (663)
T PRK12753 500 --AVAWKLAIERHNGPTALIL 518 (663)
T ss_pred --HHHHHHHHhcCCCCEEEEe
Confidence 445555554 578988765
No 242
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=58.60 E-value=23 Score=34.42 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=38.9
Q ss_pred CCceEEEEECCCcccCcchHHHHHHhhhCC-CC--eEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCC
Q 018048 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~-LP--vi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~ 296 (361)
+.+++|.+.|.|+. .++|-.+.+.+ +| |+.|+.||. +..++|+.+|+|++.++..
T Consensus 93 ~~kiavl~Sg~g~n-----l~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~~ 150 (289)
T PRK13010 93 RPKVVIMVSKFDHC-----LNDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPVT 150 (289)
T ss_pred CeEEEEEEeCCCcc-----HHHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCCC
Confidence 45788888888765 45566666543 44 888888885 2346788999999987643
No 243
>PRK12754 transketolase; Reviewed
Probab=56.92 E-value=40 Score=36.72 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=50.0
Q ss_pred cccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEe-CCCHHHHHHHHHHHHHHHH
Q 018048 235 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERAR 313 (361)
Q Consensus 235 s~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar 313 (361)
.|.. ...+.+.+++..++||++|....+++++..-.... .+.++|---.+|.+.|= --|..++.. +++.+.
T Consensus 436 ~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq---~iEdla~lR~iPn~~V~~PaD~~E~~~----~~~~a~ 507 (663)
T PRK12754 436 MFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQ---PVEQVASLRVTPNMSTWRPCDQVESAV----AWKYGV 507 (663)
T ss_pred HHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcc---cHHHHHHHhcCCCcEEecCCCHHHHHH----HHHHHH
Confidence 5554 55888888999999999999888766654322212 23344433457777653 345555544 444444
Q ss_pred cC-CCCEEEEE
Q 018048 314 RG-EGPTLVEC 323 (361)
Q Consensus 314 ~~-~gP~lIev 323 (361)
+. ++|+.|-+
T Consensus 508 ~~~~gP~yirl 518 (663)
T PRK12754 508 ERQDGPTALIL 518 (663)
T ss_pred hCCCCCEEEEe
Confidence 44 69987655
No 244
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=55.54 E-value=46 Score=28.93 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCC-CCeEEEEEc-CCcccccccccccCCcc
Q 018048 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LPIVFVVEN-NLWAIGMSHLRATSDPQ 278 (361)
Q Consensus 201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~-LPvi~VV~N-N~y~is~~~~~q~~~~d 278 (361)
+..|.|.++. + .++++++...-. ... .+.+.+...++ +|+++.... ..++...++ .....+
T Consensus 62 vg~a~GlA~~-----------G-~~pi~~~~~~f~-~~a--~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~t--H~~~~~ 124 (168)
T smart00861 62 VGFAAGLALA-----------G-LRPVVAIFFTFF-DRA--KDQIRSDGAMGRVPVVVRHDSGGGVGEDGPT--HHSQED 124 (168)
T ss_pred HHHHHHHHHc-----------C-CCcEEEeeHHHH-HHH--HHHHHHhCcccCCCEEEEecCccccCCCCcc--ccchhH
Confidence 3456666665 3 356666654322 233 77777777776 555444432 222221111 111223
Q ss_pred hhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048 279 IYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 279 ~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev 323 (361)
+.- --++|.+. +.-.|+.++...++.+++ ..++|++|-+
T Consensus 125 ~~~---~~~iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~ 164 (168)
T smart00861 125 EAL---LRAIPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRL 164 (168)
T ss_pred HHH---HhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEe
Confidence 222 22566554 345676777666666652 3468977654
No 245
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=54.64 E-value=56 Score=35.05 Aligned_cols=91 Identities=13% Similarity=0.189 Sum_probs=54.8
Q ss_pred CCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeC-CCHHHH
Q 018048 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVLKV 301 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg-~D~~~v 301 (361)
.-++|+++. ..|-|=.+-|-+.=.+.+||||+|+|.-.+ -.+..-..-...-|++-+. -+|.+.+-. .|..+
T Consensus 381 G~kPvvaIY--STFLQRAYDQliHDvaiqnLPV~faIDRAG-ivG~DG~TH~G~fDls~l~---~iPnmvi~aP~de~e- 453 (627)
T COG1154 381 GMKPVVAIY--STFLQRAYDQLIHDVAIQNLPVTFAIDRAG-IVGADGPTHQGLFDLSFLR---CIPNMVIMAPRDEEE- 453 (627)
T ss_pred CCCCEEEEe--cHHHHHHHHHHHHHHHhccCCeEEEEecCc-ccCCCCCccccHHHHHHHh---cCCCcEEecCCCHHH-
Confidence 456788776 345565556667777889999999999776 2222211111223433332 467776644 35444
Q ss_pred HHHHHHHHHHHHcCC-CCEEEEE
Q 018048 302 REVAKEAIERARRGE-GPTLVEC 323 (361)
Q Consensus 302 ~~al~~Al~~ar~~~-gP~lIev 323 (361)
++..+.++...+ +|+.|..
T Consensus 454 ---l~~ml~ta~~~~~gP~AiRy 473 (627)
T COG1154 454 ---LRQMLYTALAQDDGPVAIRY 473 (627)
T ss_pred ---HHHHHHHHHhcCCCCeEEEe
Confidence 455666666655 8998865
No 246
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=53.69 E-value=33 Score=33.22 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=37.9
Q ss_pred CCceEEEEECCCcccCcchHHHHHHhhhCC-CC--eEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCC
Q 018048 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~-LP--vi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~ 296 (361)
+.+++|...|-|+.. ++|--+...+ +| |+.|+.||. +...+|+.+|+|++.++..
T Consensus 84 ~~ki~vl~Sg~g~nl-----~~l~~~~~~g~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~~ 141 (280)
T TIGR00655 84 LKRVAILVSKEDHCL-----GDLLWRWYSGELDAEIALVISNHE--------------DLRSLVERFGIPFHYIPAT 141 (280)
T ss_pred CcEEEEEEcCCChhH-----HHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEcCCC
Confidence 467788888887654 4455555433 44 888888885 2334588899999988753
No 247
>PRK13683 hypothetical protein; Provisional
Probab=52.18 E-value=26 Score=27.88 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=30.8
Q ss_pred cCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048 285 AFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (361)
Q Consensus 285 a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g 330 (361)
.+-+.+-+=+-.|.+++|+.+..|+ +.+.|.++|+.|.+..+
T Consensus 12 P~P~SVQRKe~edA~alYq~I~~am----~sg~P~llELtCek~~~ 53 (87)
T PRK13683 12 PMPISVQRKEAEDAEALYQQIRQAM----RSGNPRLLELTCEKVED 53 (87)
T ss_pred CcceEEEeccHHHHHHHHHHHHHHH----hcCCCcEEEEEecCcCC
Confidence 3344445556678888998888876 45789999999988643
No 248
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=52.05 E-value=44 Score=36.05 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=47.4
Q ss_pred chHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHc-CCC
Q 018048 240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARR-GEG 317 (361)
Q Consensus 240 ~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~-~~g 317 (361)
....++.+++..++|+++|.....++++..-....+...++.+=.--++.++| +|++ +. ..|.+.+.+ .++
T Consensus 440 Y~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~---Et----~~aw~~Al~~~~g 512 (663)
T COG0021 440 YARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADAN---ET----AAAWKYALERKDG 512 (663)
T ss_pred hhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChH---HH----HHHHHHHHhcCCC
Confidence 34668999999999999999999877765433322333333322223444443 3444 33 445555555 589
Q ss_pred CEEEEE
Q 018048 318 PTLVEC 323 (361)
Q Consensus 318 P~lIev 323 (361)
|++|-.
T Consensus 513 Pt~Lil 518 (663)
T COG0021 513 PTALIL 518 (663)
T ss_pred CeEEEE
Confidence 998865
No 249
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=50.01 E-value=43 Score=32.41 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=37.7
Q ss_pred CCCceEEEEECCCcccCcchHHHHHHhhhC---CCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCC
Q 018048 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALW---KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (361)
Q Consensus 222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~---~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~ 296 (361)
.+.+++|...|.|+. .|+|--+... +.-|+.|+.|+. +...+|+.+|+|++.++..
T Consensus 88 ~~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~~~ 146 (286)
T PRK06027 88 ERKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVPVT 146 (286)
T ss_pred cCcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEeccC
Confidence 356778888888554 5566655543 334888888874 3344588899999987543
No 250
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=49.89 E-value=52 Score=30.36 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=35.9
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhC-CCC--eEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCC
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALW-KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~-~LP--vi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~ 296 (361)
+++|.+.|-|+-.+ +|--+... .++ +++||.||... ...++|+.+|+|.+..+..
T Consensus 1 ki~vl~Sg~Gsn~~-----al~~~~~~~~l~~~i~~visn~~~~------------~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 1 KLAVFVSGGGSNFR-----AIHDACLDGRVNGDVVVVVTNKPGC------------GGAEYARENGIPVLVYPKT 58 (207)
T ss_pred CEEEEEeCCChhHH-----HHHHHHHcCCCCeEEEEEEEeCCCC------------hHHHHHHHhCCCEEEeccc
Confidence 35778888887654 45555433 355 88888888622 2245677889999876553
No 251
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=49.60 E-value=56 Score=30.11 Aligned_cols=84 Identities=25% Similarity=0.294 Sum_probs=54.2
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhC-CCC--eEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALW-KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV 301 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~-~LP--vi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v 301 (361)
+++|.+.|-||-. |+|--|..- .+| |..|+.||.=++ -.++|+.+|+|.+.++-.+.. -
T Consensus 2 ki~VlaSG~GSNl-----qaiida~~~~~~~a~i~~Visd~~~A~------------~lerA~~~gIpt~~~~~k~~~-~ 63 (200)
T COG0299 2 KIAVLASGNGSNL-----QAIIDAIKGGKLDAEIVAVISDKADAY------------ALERAAKAGIPTVVLDRKEFP-S 63 (200)
T ss_pred eEEEEEeCCcccH-----HHHHHHHhcCCCCcEEEEEEeCCCCCH------------HHHHHHHcCCCEEEeccccCC-C
Confidence 4678888888754 456666653 334 888888884122 345778889999888765532 2
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 302 REVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 302 ~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
.+++..++....+..+|=+|-+--|
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcch
Confidence 3456667666667777877766433
No 252
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.75 E-value=49 Score=28.22 Aligned_cols=75 Identities=21% Similarity=0.214 Sum_probs=41.2
Q ss_pred HHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEE--eCC--CHHHHHHHHHHHHHHHHcCCC
Q 018048 242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV--DGM--DVLKVREVAKEAIERARRGEG 317 (361)
Q Consensus 242 ~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~V--dg~--D~~~v~~al~~Al~~ar~~~g 317 (361)
.+.+.-++..+.. -| +||. --+. ...|..+......|+..|+.+.+| .+. ...+| ++++.|++. ..|
T Consensus 18 ~~D~~~iaa~GFk--si-I~nR-PDgE-e~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV-~~f~~Al~e---aeg 88 (130)
T COG3453 18 PADIASIAALGFK--SI-ICNR-PDGE-EPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADV-EAFQRALDE---AEG 88 (130)
T ss_pred HHHHHHHHHhccc--ee-cccC-CCCC-CCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHH-HHHHHHHHH---hCC
Confidence 3445555555543 22 3454 1111 233444455666777788877654 332 22333 356666664 479
Q ss_pred CEEEEEEE
Q 018048 318 PTLVECET 325 (361)
Q Consensus 318 P~lIev~t 325 (361)
|+|-.|++
T Consensus 89 PVlayCrs 96 (130)
T COG3453 89 PVLAYCRS 96 (130)
T ss_pred CEEeeecC
Confidence 99999976
No 253
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=45.19 E-value=68 Score=32.07 Aligned_cols=98 Identities=23% Similarity=0.203 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHHHhhhhhcCCCceEEEE-ECCCcccCcchHHHHHHhhh--------CCCCeEEEEEcCCcccccccc
Q 018048 201 IPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMAAL--------WKLPIVFVVENNLWAIGMSHL 271 (361)
Q Consensus 201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~-~GDGs~~~g~~~eeL~tA~~--------~~LPvi~VV~NN~y~is~~~~ 271 (361)
+..|.|.|++ ..++++++ +.| |.+-.+-|-.+.++. +++|++++.....++...+++
T Consensus 95 vg~AaGlA~~------------G~~Pvv~~~fa~--Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tH 160 (355)
T PTZ00182 95 AGFAIGAAMN------------GLRPIAEFMFAD--FIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYH 160 (355)
T ss_pred HHHHHHHHhC------------CCEEEEEechhh--HHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcc
Confidence 4556777765 34555554 343 443333333444554 356666664333333323333
Q ss_pred cccCCcchhhccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 018048 272 RATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVE 322 (361)
Q Consensus 272 ~q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIe 322 (361)
.| .+..+.+ .+|+++|= -.|+.++... ++++.+.++|++|-
T Consensus 161 s~----~~ea~lr--~iPn~~V~~Psd~~e~~~~----l~~a~~~~~P~~i~ 202 (355)
T PTZ00182 161 SQ----SFEAYFA--HVPGLKVVAPSDPEDAKGL----LKAAIRDPNPVVFF 202 (355)
T ss_pred cc----hHHHHHh--cCCCCEEEeeCCHHHHHHH----HHHHHhCCCcEEEE
Confidence 22 1223333 46666543 3455565544 44455567999773
No 254
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.09 E-value=43 Score=29.85 Aligned_cols=48 Identities=29% Similarity=0.427 Sum_probs=35.8
Q ss_pred CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 275 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 275 ~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
-.+..+--|+|||+.++.+++.+-+.+.+.++..++ +-+||..|+..+
T Consensus 19 iTTHV~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~~ 66 (179)
T COG1303 19 ITTHVALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFGV 66 (179)
T ss_pred chhhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEcc
Confidence 345677789999999999999865666666666554 467888777655
No 255
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=44.45 E-value=59 Score=26.91 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=37.1
Q ss_pred HHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEE--eCCCH-HHHHHHHHHHHHHHHcCCCC
Q 018048 242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV--DGMDV-LKVREVAKEAIERARRGEGP 318 (361)
Q Consensus 242 ~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~V--dg~D~-~~v~~al~~Al~~ar~~~gP 318 (361)
.+.|..++..+.-.| | ||. .-+. ...|....+..+.|++.|+.++++ .+.++ .+..+++.++++ +..+|
T Consensus 17 ~~d~~~la~~GfktV--I-nlR-pd~E-~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~P 88 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTV--I-NLR-PDGE-EPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKP 88 (110)
T ss_dssp HHHHHHHHHCT--EE--E-E-S--TTS-TTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTS
T ss_pred HHHHHHHHHCCCcEE--E-ECC-CCCC-CCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCC
Confidence 566777777665533 3 443 1111 112333345778899999999864 44332 222233444443 35789
Q ss_pred EEEEEEE
Q 018048 319 TLVECET 325 (361)
Q Consensus 319 ~lIev~t 325 (361)
+++.|.+
T Consensus 89 vl~hC~s 95 (110)
T PF04273_consen 89 VLAHCRS 95 (110)
T ss_dssp EEEE-SC
T ss_pred EEEECCC
Confidence 9999965
No 256
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=43.13 E-value=88 Score=26.11 Aligned_cols=61 Identities=20% Similarity=0.129 Sum_probs=39.0
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEe
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD 294 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vd 294 (361)
.+..|+++.||.-.. ...+.+..+...++++.+|-......- ...+..+++.-|..++.++
T Consensus 99 ~~~~iv~iTDG~~~~-~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~tgG~~~~~~ 159 (172)
T PF13519_consen 99 RRRAIVLITDGEDNS-SDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEATGGRYFHVD 159 (172)
T ss_dssp EEEEEEEEES-TTHC-HHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHHTEEEEEEE-
T ss_pred CceEEEEecCCCCCc-chhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHhcCCEEEEec
Confidence 577899999997663 345677777777777666654443110 1346677777888888884
No 257
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=42.98 E-value=80 Score=28.86 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=35.8
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCC--eEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCC
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD 297 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP--vi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D 297 (361)
+++|.+.|+|+..+. ++ ......+++ |++||.|+. . ....++|+..|+|++.++..+
T Consensus 3 ki~vl~sg~gs~~~~-ll---~~~~~~~~~~~I~~vvs~~~-~-----------~~~~~~a~~~gIp~~~~~~~~ 61 (200)
T PRK05647 3 RIVVLASGNGSNLQA-II---DACAAGQLPAEIVAVISDRP-D-----------AYGLERAEAAGIPTFVLDHKD 61 (200)
T ss_pred eEEEEEcCCChhHHH-HH---HHHHcCCCCcEEEEEEecCc-c-----------chHHHHHHHcCCCEEEECccc
Confidence 578999999888754 12 222333344 666667764 1 113567788999999876443
No 258
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=40.58 E-value=70 Score=35.61 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=54.6
Q ss_pred CCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHH
Q 018048 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~ 302 (361)
.++++||+.|+..... .+-.+-.+|.+.+.|...|-..|.=........+..-.....+|+.+|....++.|.|+.
T Consensus 248 ~e~ilvcI~~~~~~e~-liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~--- 323 (890)
T COG2205 248 RERILVCISGSPGSEK-LIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVA--- 323 (890)
T ss_pred cceEEEEECCCCchHH-HHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHH---
Confidence 3678888888865543 457778888889999544433332011221122222234567889999999999999843
Q ss_pred HHHHHHHHHHHcCC
Q 018048 303 EVAKEAIERARRGE 316 (361)
Q Consensus 303 ~al~~Al~~ar~~~ 316 (361)
+.-+++|+..+
T Consensus 324 ---~~i~~ya~~~~ 334 (890)
T COG2205 324 ---KAIARYAREHN 334 (890)
T ss_pred ---HHHHHHHHHcC
Confidence 44556676654
No 259
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=40.11 E-value=96 Score=30.53 Aligned_cols=102 Identities=22% Similarity=0.147 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhC--------CCCeEEEEEcCCccccccccc
Q 018048 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW--------KLPIVFVVENNLWAIGMSHLR 272 (361)
Q Consensus 201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~--------~LPvi~VV~NN~y~is~~~~~ 272 (361)
+..|.|.|++ ..++++++.. ..|.+-.+-|-.+-++.+ ++|+++...+-.++-..+++.
T Consensus 64 vg~AaGlA~~------------G~~Piv~~~~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~ 130 (327)
T PRK09212 64 AGLAVGAAFA------------GLRPIVEFMT-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHS 130 (327)
T ss_pred HHHHHHHHHc------------CCeeEEEeeh-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccc
Confidence 4567777765 3456666443 122322223333444444 577777654422222112221
Q ss_pred ccCCcchhhccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048 273 ATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVECET 325 (361)
Q Consensus 273 q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIev~t 325 (361)
| .+..+.+ .+|+++|= -.|..++... ++++.+.++|++|-...
T Consensus 131 ~----~~ea~~r--~iP~l~V~~P~d~~e~~~~----l~~a~~~~~Pv~i~~~~ 174 (327)
T PRK09212 131 Q----CYAAWYS--HIPGLKVVAPYFAADCKGL----LKTAIRDPNPVIFLENE 174 (327)
T ss_pred c----CHHHHHh--cCCCCEEEeeCCHHHHHHH----HHHHHhCCCcEEEEEch
Confidence 2 1223332 56776553 3466665544 44455568899985433
No 260
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=39.61 E-value=2.1e+02 Score=27.16 Aligned_cols=89 Identities=21% Similarity=0.188 Sum_probs=60.0
Q ss_pred CCCceEEEEECCCcccCcchHHHHHHhhh-CCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHH
Q 018048 222 DCDHVTLAFFGDGTCNNGQFFECLNMAAL-WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLK 300 (361)
Q Consensus 222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~-~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~ 300 (361)
..+...+.+.-|-.+..|. .+-|..+.. -++||+. .+ | -+ .+.-...+..+|+..+.+...+...
T Consensus 81 ~~GA~aisvlte~~~f~g~-~~~l~~v~~~v~iPvl~---kd-f--i~-------~~~qi~~a~~~GAD~VlLi~~~l~~ 146 (260)
T PRK00278 81 AGGAACLSVLTDERFFQGS-LEYLRAARAAVSLPVLR---KD-F--II-------DPYQIYEARAAGADAILLIVAALDD 146 (260)
T ss_pred hCCCeEEEEecccccCCCC-HHHHHHHHHhcCCCEEe---ee-e--cC-------CHHHHHHHHHcCCCEEEEEeccCCH
Confidence 3456778888888777664 677777765 5899883 22 1 11 1223455667899999988766221
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048 301 VREVAKEAIERARRGEGPTLVECETY 326 (361)
Q Consensus 301 v~~al~~Al~~ar~~~gP~lIev~t~ 326 (361)
..+++.+++++.-+.-+++||.+.
T Consensus 147 --~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 147 --EQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred --HHHHHHHHHHHHcCCeEEEEeCCH
Confidence 356777778877778888998775
No 261
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=39.04 E-value=2.3e+02 Score=27.31 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=43.2
Q ss_pred CceEEEEECCCccc----CcchHHHHHHhhhCCC-CeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCH
Q 018048 224 DHVTLAFFGDGTCN----NGQFFECLNMAALWKL-PIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~----~g~~~eeL~tA~~~~L-Pvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~ 298 (361)
.+++++++-||=.+ .+...+++..|..... ++.++|.|=.-.. ....-..++|..+|.++++.+....
T Consensus 177 ~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~-------~~~g~~~~iA~~~Gg~~~~L~~l~~ 249 (261)
T COG1240 177 RRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE-------VRLGLAEEIARASGGEYYHLDDLSD 249 (261)
T ss_pred cceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc-------ccccHHHHHHHHhCCeEEecccccc
Confidence 47888999999766 2224566666654332 3433333332010 1112245688899999999998875
Q ss_pred HHHHH
Q 018048 299 LKVRE 303 (361)
Q Consensus 299 ~~v~~ 303 (361)
..+..
T Consensus 250 ~~i~~ 254 (261)
T COG1240 250 DSIVS 254 (261)
T ss_pred hHHHH
Confidence 55543
No 262
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=38.31 E-value=52 Score=29.71 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=47.3
Q ss_pred HHHHhhhCCCCeEEEEEcCCccccccc--------ccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHc
Q 018048 244 CLNMAALWKLPIVFVVENNLWAIGMSH--------LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 314 (361)
Q Consensus 244 eL~tA~~~~LPvi~VV~NN~y~is~~~--------~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~ 314 (361)
...+..++...+++++.||- .+.-.. ++|.....+.++-+.++.|++.+++.|-.+=+....+|++....
T Consensus 106 ~~~~i~~~r~DL~lLl~p~t-~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~~v~i~~~~y~eR~~~~~~aV~ell~ 183 (187)
T COG3172 106 LQALIAEYRFDLTLLLEPNT-PWVADGLRSLGSSVQRQEFQNLLEQMLEENNIPFVVIEGEDYLERYLQAVEAVEELLG 183 (187)
T ss_pred HHHHHhhcccceEEEcCCCC-ceeCCCccccccHhHHHHHHHHHHHHHHHhCCcEEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 34566788888999999995 322111 11222234556667789999999999888877777777776654
No 263
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=36.64 E-value=74 Score=33.53 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=56.8
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEE--cCCcccccc--cccccCCcc---hhhccccCCccEEEEeCCC
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVE--NNLWAIGMS--HLRATSDPQ---IYKKGPAFGMPGFHVDGMD 297 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~--NN~y~is~~--~~~q~~~~d---~~~~A~a~Gi~~~~Vdg~D 297 (361)
...|..+|=|+++- +..+.=+=..++|||+||- |-. ..++. -+....+.| +.++++-.-+...-++ |
T Consensus 68 ~a~VtTfgVGeLSA---lNGIAGsYAE~vpVihIVG~Pnt~-~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~--~ 141 (561)
T KOG1184|consen 68 GACVTTFGVGELSA---LNGIAGAYAENVPVIHIVGVPNTN-DQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMIN--D 141 (561)
T ss_pred eEEEEEeccchhhh---hcccchhhhhcCCEEEEECCCCcc-cccccchheeecCCCchHHHHHHHHhhhhHHhhhc--C
Confidence 45677778887771 1123334467999999984 111 11111 111123344 3344444333333443 4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 298 VLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 298 ~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
.++..+.+..|++.+....+|+-|.+.+.-
T Consensus 142 ~e~A~~~ID~aI~~~~~~~rPVYi~iP~n~ 171 (561)
T KOG1184|consen 142 IEDAPEQIDKAIRTALKESKPVYIGVPANL 171 (561)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEeeccc
Confidence 456777889999999999999999998853
No 264
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=35.67 E-value=1.6e+02 Score=26.18 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=41.9
Q ss_pred CceEEEEECCCcccC-cchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHH
Q 018048 224 DHVTLAFFGDGTCNN-GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~-g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~ 302 (361)
.+.++++++||+-.. +...+....+...+++|-+|-..+. ..-+.++|++-|-.++.+...+ ++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~~~~--~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVILDET--HLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeCCHH--HHH
Confidence 455788888887653 2334556667777887666544321 1237788999999999885443 544
Q ss_pred H
Q 018048 303 E 303 (361)
Q Consensus 303 ~ 303 (361)
+
T Consensus 173 ~ 173 (183)
T cd01453 173 E 173 (183)
T ss_pred H
Confidence 3
No 265
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=33.78 E-value=2.9e+02 Score=29.71 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=57.6
Q ss_pred cccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcc---------hHHHHHHhh---hCCCCeEEEEEcCCc
Q 018048 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ---------FFECLNMAA---LWKLPIVFVVENNLW 264 (361)
Q Consensus 197 mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~---------~~eeL~tA~---~~~LPvi~VV~NN~y 264 (361)
-|.+.|.+-|...|.+...+... ....++|+++-||-.+.+. ..+++..|. ..++++++|-.-+.
T Consensus 472 ~gGgTpL~~gL~~A~~~l~~~~~--~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~- 548 (584)
T PRK13406 472 GGGGTPLAAGLDAAAALALQVRR--KGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR- 548 (584)
T ss_pred CCCCChHHHHHHHHHHHHHHhcc--CCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC-
Confidence 34567777777777554322110 1236788889999887542 133333333 34566554422211
Q ss_pred ccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHH
Q 018048 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKE 307 (361)
Q Consensus 265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~ 307 (361)
......++|+..|..++.+..-+...+.++++.
T Consensus 549 ----------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~ 581 (584)
T PRK13406 549 ----------PQPQARALAEAMGARYLPLPRADAGRLSQAVRA 581 (584)
T ss_pred ----------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHh
Confidence 123467789999999999998886666544443
No 266
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=33.07 E-value=4e+02 Score=24.68 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=15.5
Q ss_pred CCceEEEEECCCcccCc
Q 018048 223 CDHVTLAFFGDGTCNNG 239 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g 239 (361)
..++||-+.|||--+.|
T Consensus 115 ~~RrVIDvSGDG~~N~G 131 (205)
T PF06707_consen 115 CWRRVIDVSGDGPNNQG 131 (205)
T ss_pred CceEEEEECCCCCCCCC
Confidence 56899999999999988
No 267
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=32.48 E-value=1.3e+02 Score=27.20 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=34.7
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhCCCC--eEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeC
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP--vi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg 295 (361)
+++|.+.|.|+.... -++.....+++ |..||.|+. . -...++|+..|+|.+.++-
T Consensus 2 riail~sg~gs~~~~----ll~~~~~~~l~~~I~~vi~~~~-~-----------~~~~~~A~~~gip~~~~~~ 58 (190)
T TIGR00639 2 RIVVLISGNGSNLQA----IIDACKEGKIPASVVLVISNKP-D-----------AYGLERAAQAGIPTFVLSL 58 (190)
T ss_pred eEEEEEcCCChhHHH----HHHHHHcCCCCceEEEEEECCc-c-----------chHHHHHHHcCCCEEEECc
Confidence 467888888887754 24444444554 666666764 1 0124667788999987653
No 268
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=31.88 E-value=1.4e+02 Score=29.00 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=41.9
Q ss_pred CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCc-chHHHHHHhh---------hCCCCeEEEEEcC
Q 018048 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG-QFFECLNMAA---------LWKLPIVFVVENN 262 (361)
Q Consensus 193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g-~~~eeL~tA~---------~~~LPvi~VV~NN 262 (361)
-+..||.+++.++|.++.....+.. ..+-++|++.--|+.-|- ....=|++|. +.+||.|.|+.|=
T Consensus 130 df~FmgGSmGsVvGeki~ra~E~A~----e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~P 205 (294)
T COG0777 130 DFAFMGGSMGSVVGEKITRAIERAI----EDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDP 205 (294)
T ss_pred eccccccchhHHHHHHHHHHHHHHH----HhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC
Confidence 3456677777788888775444321 245678888877776532 1233334433 4589999998876
Q ss_pred C
Q 018048 263 L 263 (361)
Q Consensus 263 ~ 263 (361)
-
T Consensus 206 T 206 (294)
T COG0777 206 T 206 (294)
T ss_pred C
Confidence 5
No 269
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.44 E-value=1.9e+02 Score=23.22 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEc
Q 018048 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN 261 (361)
Q Consensus 222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~N 261 (361)
.++..+|++.-.|...+- .+.+..|.+.+.|+|.|..|
T Consensus 52 ~~~d~vi~is~sg~~~~~--~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 52 DPDDLVIIISYSGETREL--IELLRFAKERGAPVILITSN 89 (131)
T ss_dssp STTEEEEEEESSSTTHHH--HHHHHHHHHTTSEEEEEESS
T ss_pred cccceeEeeeccccchhh--hhhhHHHHhcCCeEEEEeCC
Confidence 466778888878877654 88888888999998666644
No 270
>PRK06988 putative formyltransferase; Provisional
Probab=31.15 E-value=1.3e+02 Score=29.32 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=38.1
Q ss_pred EEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCC
Q 018048 228 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (361)
Q Consensus 228 v~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~ 296 (361)
|+|+|.+.+. ...|+.....+..|+.|+.+.. .- .. ......+.++|..+|+|++..+..
T Consensus 5 Ivf~Gs~~~a----~~~L~~L~~~~~~i~~Vvt~~d-~~---~~-~~~~~~v~~~A~~~gip~~~~~~~ 64 (312)
T PRK06988 5 AVVFAYHNVG----VRCLQVLLARGVDVALVVTHED-NP---TE-NIWFGSVAAVAAEHGIPVITPADP 64 (312)
T ss_pred EEEEeCcHHH----HHHHHHHHhCCCCEEEEEcCCC-CC---cc-CcCCCHHHHHHHHcCCcEEccccC
Confidence 7888998877 3345554455677887777643 10 01 112346788999999999875443
No 271
>PRK10490 sensor protein KdpD; Provisional
Probab=30.19 E-value=1.6e+02 Score=33.16 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=49.4
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeE-EEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIV-FVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi-~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~ 302 (361)
+++.||+.|+ -.++-.+-.+..+|.+.+.|.. +.|...... ......+..-.+..++|+.+|.....+.|.|+.+
T Consensus 251 eriLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~-~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva~-- 326 (895)
T PRK10490 251 DAILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLH-RLPEKKRRAILSALRLAQELGAETATLSDPAEEK-- 326 (895)
T ss_pred CeEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcC-cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH--
Confidence 4566666666 4444555677788889999933 333333211 1111111112234468999999999999998553
Q ss_pred HHHHHHHHHHHcCC
Q 018048 303 EVAKEAIERARRGE 316 (361)
Q Consensus 303 ~al~~Al~~ar~~~ 316 (361)
.-+++|+..+
T Consensus 327 ----~i~~~A~~~~ 336 (895)
T PRK10490 327 ----AVLRYAREHN 336 (895)
T ss_pred ----HHHHHHHHhC
Confidence 3455665543
No 272
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=28.02 E-value=3e+02 Score=27.23 Aligned_cols=114 Identities=20% Similarity=0.135 Sum_probs=69.9
Q ss_pred CCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHH
Q 018048 223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~ 302 (361)
++..+++.. |+.+.|++.+.-..|++.++..+++++|=- . . ...+.+ .-+.+-+|+...-+|...-..+.
T Consensus 62 ~g~dTlvT~--GgiQSNh~r~tAavA~~lGl~~v~ile~~~-~-~-----y~~ngn-~Ll~~l~G~~~~~~~~~~d~~~~ 131 (323)
T COG2515 62 KGADTLVTY--GGIQSNHVRQTAAVAAKLGLKCVLILENIE-A-N-----YLLNGN-LLLSKLMGAEVRAVDAGTDIGIN 131 (323)
T ss_pred cCCcEEEEe--cccchhHHHHHHHHHHhcCCcEEEEEeccc-c-c-----cccccc-hhhhhhcCceEEEecCCCChhhc
Confidence 344455544 678888888889999999999999998754 1 1 111222 22344578888888754322233
Q ss_pred HHHHHHHHHHH-cCCCCEEEEEEEecCCC-CCCCCCCCCCCHHHHHhHHHh
Q 018048 303 EVAKEAIERAR-RGEGPTLVECETYRFRG-HSLADPDELRDPGEHLVLVLF 351 (361)
Q Consensus 303 ~al~~Al~~ar-~~~gP~lIev~t~R~~g-Hs~~Dp~~yR~~~e~~~~~~~ 351 (361)
...+...++++ ++++|.+|-. .| |+..-..-.|-..|+..|+..
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp~-----GG~~~~g~lGyv~~a~Ei~~Q~~~ 177 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIPE-----GGSSPLGALGYVRLALEIAEQAEQ 177 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEecc-----CCcCccccccHHHHHHHHHHHHhh
Confidence 34455555554 3778988854 44 333333333777888888774
No 273
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=28.01 E-value=3.5e+02 Score=29.38 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=84.2
Q ss_pred CCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCcccccccc
Q 018048 122 YNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI 201 (361)
Q Consensus 122 ~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~l 201 (361)
..|+||+.-++ +..+--+...||+ -+..+++..+..... .. |..++ -...| =--++
T Consensus 16 llGneAi~r~A---le~gV~~~aGYpG--------tPstei~e~la~~~~-~l----~~vy~-e~s~N-------EkvA~ 71 (640)
T COG4231 16 LLGNEAIARGA---LEAGVGVAAGYPG--------TPSTELIETLAKAKK-IL----GDVYF-EWSLN-------EKVAL 71 (640)
T ss_pred hccHHHHHHHH---HhcCceEEeccCC--------CCcHHHHHHHHHhhh-hc----CcEEE-Eeccc-------HHHHH
Confidence 67999887543 4445556677764 455677776654432 11 11111 00001 01123
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC--eEEEEEcCCcccccccccccCCcch
Q 018048 202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP--IVFVVENNLWAIGMSHLRATSDPQI 279 (361)
Q Consensus 202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP--vi~VV~NN~y~is~~~~~q~~~~d~ 279 (361)
-.|.|++++ +...++..= ....+...-.|-+++-.+.- +++|+-++- +...++..| .+.-|
T Consensus 72 e~a~GA~~~-------------G~ral~~mK--hVGlNvAsDpl~s~ay~Gv~GGlviv~aDDp-g~~SSqneq-dsr~y 134 (640)
T COG4231 72 ETAAGASYA-------------GVRALVTMK--HVGLNVASDPLMSLAYAGVTGGLVIVVADDP-GMHSSQNEQ-DSRAY 134 (640)
T ss_pred HHHHHhhhc-------------CceeeEEec--ccccccchhhhhhhhhcCccccEEEEEccCC-Ccccccchh-HhHHH
Confidence 456666665 222222221 12222222333344433433 666666665 433322222 12223
Q ss_pred hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048 280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR 327 (361)
Q Consensus 280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R 327 (361)
.+ ...+|.+ |-.|+.+.++.++.|.+-.+..+-|+++-+.|.-
T Consensus 135 ~~---~a~iPvL--eP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~ 177 (640)
T COG4231 135 GK---FALIPVL--EPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRV 177 (640)
T ss_pred HH---hcCceee--cCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeee
Confidence 33 3346654 5568999999999999999999999999887743
No 274
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=27.76 E-value=50 Score=25.02 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCCCEEEEE
Q 018048 305 AKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 305 l~~Al~~ar~~~gP~lIev 323 (361)
+.+|++.|++.++|++|++
T Consensus 6 ~~~al~~A~~~~kpvlv~f 24 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDF 24 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5678888999999999999
No 275
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=26.93 E-value=1.9e+02 Score=27.06 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=29.7
Q ss_pred chhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048 278 QIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323 (361)
Q Consensus 278 d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev 323 (361)
.+.+..+.+|+.+......+..++.+++++..++....+.-+++-+
T Consensus 34 ~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 34 NLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred HHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 4666677789999888888877777766665432222244555555
No 276
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=26.21 E-value=4.3e+02 Score=22.88 Aligned_cols=68 Identities=9% Similarity=0.075 Sum_probs=41.5
Q ss_pred ceEEEEECCCcccCcc--h----HHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCH
Q 018048 225 HVTLAFFGDGTCNNGQ--F----FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~--~----~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~ 298 (361)
+.+|+++.||.-+.|. . .+....+...+++++.|-..-. . ....-+.++|+.-|..++.++..+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~-~--------~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGR-P--------VRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCC-c--------cCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5789999999877542 1 2223444566777654421110 0 0112367788889999999988874
Q ss_pred HHH
Q 018048 299 LKV 301 (361)
Q Consensus 299 ~~v 301 (361)
.++
T Consensus 170 ~~~ 172 (178)
T cd01451 170 DAI 172 (178)
T ss_pred HHH
Confidence 443
No 277
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=24.54 E-value=2.4e+02 Score=27.75 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=19.9
Q ss_pred CccEEEEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 018048 287 GMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVE 322 (361)
Q Consensus 287 Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIe 322 (361)
.+|+.+|= -.|+.+.+..++. +.+.++|++|-
T Consensus 139 ~iPgl~V~~Psd~~d~~~~l~~----a~~~~~Pv~ir 171 (327)
T CHL00144 139 SVPGLQIVACSTPYNAKGLLKS----AIRSNNPVIFF 171 (327)
T ss_pred cCCCCEEEEeCCHHHHHHHHHH----HHhCCCcEEEE
Confidence 56777553 3466666555444 44567999885
No 278
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=24.52 E-value=1.4e+02 Score=23.76 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=35.6
Q ss_pred ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEEe
Q 018048 282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARR--GEGPTLVECETY 326 (361)
Q Consensus 282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~--~~gP~lIev~t~ 326 (361)
++..+++..+++...|+.++.+++.+-++.+-. .+.|++|++.-.
T Consensus 9 Kg~~~~l~vl~l~~~d~~~l~~~L~~ki~~ap~FF~~~pvvldl~~l 55 (99)
T PF05209_consen 9 KGSNFTLLVLRLRSADLDELLQALDEKIAQAPDFFKNAPVVLDLSNL 55 (99)
T ss_dssp EEETTEEEEEEECSS-HHHHHHHHHHHHHHTHHHCTTTEEEEEEEEE
T ss_pred EcCceeEEEEEeCCCCHHHHHHHHHHHHHhChHhHcCCCeEEehhhc
Confidence 445688899999999999999999888887765 467999998643
No 279
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.93 E-value=1.5e+02 Score=24.30 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=28.2
Q ss_pred CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC
Q 018048 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263 (361)
Q Consensus 222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~ 263 (361)
.++..+|++.--|...+- .+.+..|...+.|++.|..|..
T Consensus 46 ~~~dl~I~iS~SG~t~~~--~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKET--VAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChHH--HHHHHHHHHcCCeEEEEECCCC
Confidence 355677777777776644 7888888888888777665443
No 280
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=22.83 E-value=3.2e+02 Score=29.54 Aligned_cols=88 Identities=18% Similarity=0.117 Sum_probs=44.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCc-----chHHHHHHhh---hCCCCeEEEEEcCCcccccc
Q 018048 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG-----QFFECLNMAA---LWKLPIVFVVENNLWAIGMS 269 (361)
Q Consensus 198 G~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g-----~~~eeL~tA~---~~~LPvi~VV~NN~y~is~~ 269 (361)
|.+.|.+-|...|.+...+........+.+|+++.||-.+.+ .+-+++..|. ..++++++|-..+.
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~------ 611 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG------ 611 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC------
Confidence 444555556555544432111111235688999999988652 1223333333 34555444422111
Q ss_pred cccccCCcchhhccccCCccEEEEe
Q 018048 270 HLRATSDPQIYKKGPAFGMPGFHVD 294 (361)
Q Consensus 270 ~~~q~~~~d~~~~A~a~Gi~~~~Vd 294 (361)
.....-..++|+..|..++.++
T Consensus 612 ---~~~~~~~~~lA~~~gg~y~~l~ 633 (633)
T TIGR02442 612 ---FVRLGLAEDLARALGGEYVRLD 633 (633)
T ss_pred ---CcchhHHHHHHHhhCCeEEecC
Confidence 0112235667788888887653
No 281
>PLN02828 formyltetrahydrofolate deformylase
Probab=22.78 E-value=3.1e+02 Score=26.39 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=40.5
Q ss_pred CCCceEEEEECCCcccCcchHHHHHHhhhCC-CC--eEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeC
Q 018048 222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (361)
Q Consensus 222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~-LP--vi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg 295 (361)
.+.+++|.+.|-|+..+ +|-.+.+.+ || |+.||.|+. . + ...+..++|+.+|+|++.+..
T Consensus 69 ~~~riavlvSg~g~nl~-----~ll~~~~~g~l~~eI~~ViSn~~-~---~-----~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 69 PKYKIAVLASKQDHCLI-----DLLHRWQDGRLPVDITCVISNHE-R---G-----PNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred CCcEEEEEEcCCChhHH-----HHHHhhhcCCCCceEEEEEeCCC-C---C-----CCchHHHHHHHcCCCEEEeCC
Confidence 34577888888877654 455554432 44 888888875 1 0 123677889999999997754
No 282
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=22.11 E-value=8.9e+02 Score=25.11 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=66.9
Q ss_pred ceEEEEECCCcccCcchHHHHHHhhhC-------------CCCeEEEEEcCCcccccccccccCCcchhhccccCCccEE
Q 018048 225 HVTLAFFGDGTCNNGQFFECLNMAALW-------------KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGF 291 (361)
Q Consensus 225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~-------------~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~ 291 (361)
.+|.+-+|-.+...=.+.|++....+. ..||+++++|-. - + .++....---|+..+
T Consensus 381 KPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~-D--V--------D~IhEYLLlKGVEav 449 (610)
T KOG0341|consen 381 KPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKA-D--V--------DDIHEYLLLKGVEAV 449 (610)
T ss_pred cceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEecccc-C--h--------HHHHHHHHHccceeE
Confidence 456666665544433479999887643 245888888765 1 1 122222222377777
Q ss_pred EEeC-CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCC---CCCCHHHHHhHHHhh
Q 018048 292 HVDG-MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPGEHLVLVLFI 352 (361)
Q Consensus 292 ~Vdg-~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~---~yR~~~e~~~~~~~~ 352 (361)
.+.| .|-++ -..|++..|.+++.+||-..+-- .|--..|-+ .|--|+|++++.--+
T Consensus 450 aIHGGKDQed----R~~ai~afr~gkKDVLVATDVAS-KGLDFp~iqHVINyDMP~eIENYVHRI 509 (610)
T KOG0341|consen 450 AIHGGKDQED----RHYAIEAFRAGKKDVLVATDVAS-KGLDFPDIQHVINYDMPEEIENYVHRI 509 (610)
T ss_pred EeecCcchhH----HHHHHHHHhcCCCceEEEecchh-ccCCCccchhhccCCChHHHHHHHHHh
Confidence 7765 44322 34577777889999998765522 222222212 588899999987654
No 283
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=21.95 E-value=2.4e+02 Score=27.37 Aligned_cols=53 Identities=23% Similarity=0.120 Sum_probs=34.5
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCC-CC--eEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeC
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWK-LP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~-LP--vi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg 295 (361)
.+++|...|- |...++|--+...+ ++ |+.|+.|+. +...+|+.+|+|.+.++.
T Consensus 90 ~ri~vl~Sg~-----g~nl~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK13011 90 PKVLIMVSKF-----DHCLNDLLYRWRIGELPMDIVGVVSNHP--------------DLEPLAAWHGIPFHHFPI 145 (286)
T ss_pred ceEEEEEcCC-----cccHHHHHHHHHcCCCCcEEEEEEECCc--------------cHHHHHHHhCCCEEEeCC
Confidence 3555555653 22367777776544 44 888887774 345568889999998753
No 284
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=21.92 E-value=3.9e+02 Score=24.46 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCC
Q 018048 245 LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (361)
Q Consensus 245 L~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~ 296 (361)
...|...++|+++++-++. + +.-....+.+|...+.+++.
T Consensus 66 A~~a~~~g~~~~v~~p~~~---~---------~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 66 AAAAARLGLKCTIVMPEGA---S---------PEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred HHHHHHcCCCEEEEECCCC---C---------HHHHHHHHHCCCEEEEECCC
Confidence 3445568999888877653 1 22344566789999999876
No 285
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=21.44 E-value=2.8e+02 Score=26.97 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=39.7
Q ss_pred EEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCC
Q 018048 228 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD 297 (361)
Q Consensus 228 v~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D 297 (361)
|+|+|...|.. ..|......+..++.||.+.. .-.. +.......++.++|...|+|++..+..+
T Consensus 3 Ivf~Gs~~~a~----~~L~~L~~~~~~i~~Vvt~pd-~~~~-r~~~~~~~~v~~~A~~~~Ipv~~~~~~~ 66 (313)
T TIGR00460 3 IVFFGTPTFSL----PVLEELREDNFEVVGVVTQPD-KPAG-RGKKLTPPPVKVLAEEKGIPVFQPEKQR 66 (313)
T ss_pred EEEECCCHHHH----HHHHHHHhCCCcEEEEEcCCC-CccC-CCCCCCCChHHHHHHHcCCCEEecCCCC
Confidence 67888888773 344444445567777776542 1000 1112234568888999999999876654
No 286
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=21.04 E-value=5.7e+02 Score=26.02 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=33.9
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCC
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~ 296 (361)
+..++.+.|-|+..|- +. .+..-+--=.++|.+|+ .+| ..+.++++.||.+...++..
T Consensus 55 ~~~~~ll~gsGt~amE----Aa-v~sl~~pgdkVLv~~nG-~FG---------~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 55 NGDVVLLSGSGTLAME----AA-VASLVEPGDKVLVVVNG-KFG---------ERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred CCcEEEEcCCcHHHHH----HH-HHhccCCCCeEEEEeCC-hHH---------HHHHHHHHHhCCceEEEeCC
Confidence 4578888888887732 21 11111111344444565 333 24788888999998887643
No 287
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.93 E-value=1.6e+02 Score=24.04 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=16.8
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEE
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVV 259 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV 259 (361)
+..+|++.-.|...+- .+.++.|.+.+.|+|.|.
T Consensus 44 ~dl~I~iS~SG~t~e~--i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 44 KTLVIAVSYSGNTEET--LSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CCEEEEEECCCCCHHH--HHHHHHHHHCCCEEEEEe
Confidence 3445555555544432 555555555555554444
No 288
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=20.83 E-value=2.4e+02 Score=26.26 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=51.6
Q ss_pred EEEECCCccc-CcchHHHHHHhh-hCCCCeEEEEEcCCccc--ccccccc------cCCcchhhccccCCccEEEEeCCC
Q 018048 228 LAFFGDGTCN-NGQFFECLNMAA-LWKLPIVFVVENNLWAI--GMSHLRA------TSDPQIYKKGPAFGMPGFHVDGMD 297 (361)
Q Consensus 228 v~~~GDGs~~-~g~~~eeL~tA~-~~~LPvi~VV~NN~y~i--s~~~~~q------~~~~d~~~~A~a~Gi~~~~Vdg~D 297 (361)
+...|-|++. .| |..|+ +.++.+-+++.+.+ .+ ...+... .-..++.+.++..|++...-+ .+
T Consensus 46 fmtsGhGGC~P~G-----LAlAA~rrG~~vev~~~~~~-plfld~vr~~~kk~v~~~v~~~f~~~a~~~gv~~~~~~-~~ 118 (207)
T PF11814_consen 46 FMTSGHGGCGPFG-----LALAAARRGFKVEVWVSTDG-PLFLDSVRSEEKKEVMELVHEDFREEAEQAGVPVHYRP-LS 118 (207)
T ss_pred cccCCCCCcChHH-----HHHHHHHcCCceEEEECCCC-CceeccCCCHHHHHHHHHHHHHHHHHHHHCCCceecCC-CC
Confidence 3345788877 44 66665 45777777777666 21 1112111 123467888888999876532 23
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048 298 VLKVREVAKEAIERARRGEGPTLVECETYRFRG 330 (361)
Q Consensus 298 ~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g 330 (361)
..+ +++ +.+.++-+||-+.+||+.|
T Consensus 119 ~~~----l~~----~l~~G~~~lvLIS~y~~~g 143 (207)
T PF11814_consen 119 LAD----LRA----ALAAGAIVLVLISTYRMDG 143 (207)
T ss_pred HHH----HHH----HHHCCCEEEEEEeecccCC
Confidence 222 333 3345667777788999865
No 289
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=20.54 E-value=4.2e+02 Score=25.34 Aligned_cols=22 Identities=9% Similarity=0.369 Sum_probs=19.9
Q ss_pred HHHHHHhhhCCCCeEEEEEcCC
Q 018048 242 FECLNMAALWKLPIVFVVENNL 263 (361)
Q Consensus 242 ~eeL~tA~~~~LPvi~VV~NN~ 263 (361)
++++.-|...++|+|-+|.-|.
T Consensus 131 ~qAI~EA~~lnIPvIal~DTds 152 (249)
T PTZ00254 131 HQAIREASYVNIPVIALCDTDS 152 (249)
T ss_pred hHHHHHHHHhCCCEEEEecCCC
Confidence 8899999999999999998664
No 290
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=20.44 E-value=1.8e+02 Score=28.11 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHHH----cCC-----CCEEEEEEE
Q 018048 295 GMDVLKVREVAKEAIERAR----RGE-----GPTLVECET 325 (361)
Q Consensus 295 g~D~~~v~~al~~Al~~ar----~~~-----gP~lIev~t 325 (361)
...+.++.+.++++.+++. +.. .|.-+|+..
T Consensus 186 ~~~p~~a~~~I~~~a~~Al~~~~~~~p~~~~~P~~l~i~f 225 (266)
T cd08663 186 CLPPAEARALIREAAAEAVRRLGKVKPLTPPGPYTLEIEF 225 (266)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCCCCCCEEEEEEE
Confidence 3455566667777776663 222 576666643
No 291
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.36 E-value=8.3e+02 Score=24.03 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=58.4
Q ss_pred CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEE-cCCcccccccccccCCcchhhccccCC-ccEEEEeCCCHHHH
Q 018048 224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVE-NNLWAIGMSHLRATSDPQIYKKGPAFG-MPGFHVDGMDVLKV 301 (361)
Q Consensus 224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~-NN~y~is~~~~~q~~~~d~~~~A~a~G-i~~~~Vdg~D~~~v 301 (361)
.+.+|.++|=|+-. | -.-++++|.+.. .+.+.. |.+ +. .+..+..+..| ++++.||=.|.+++
T Consensus 37 ~g~~vLITGgg~Gl-G-r~ialefa~rg~--~~vl~Din~~-~~----------~etv~~~~~~g~~~~y~cdis~~eei 101 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL-G-RLIALEFAKRGA--KLVLWDINKQ-GN----------EETVKEIRKIGEAKAYTCDISDREEI 101 (300)
T ss_pred cCCEEEEeCCCchH-H-HHHHHHHHHhCC--eEEEEecccc-ch----------HHHHHHHHhcCceeEEEecCCCHHHH
Confidence 46688899877655 3 255788887766 333333 333 21 11122222123 77889999998888
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEE-ecCCCCCCCCCCCCCCHHHHHhHHHhh
Q 018048 302 REVAKEAIERARRGEGPTLVECET-YRFRGHSLADPDELRDPGEHLVLVLFI 352 (361)
Q Consensus 302 ~~al~~Al~~ar~~~gP~lIev~t-~R~~gHs~~Dp~~yR~~~e~~~~~~~~ 352 (361)
++..++ .++.-||+-|-|.- --..+|+..| =+++|+++-.-++
T Consensus 102 ~~~a~~----Vk~e~G~V~ILVNNAGI~~~~~ll~----~~d~ei~k~~~vN 145 (300)
T KOG1201|consen 102 YRLAKK----VKKEVGDVDILVNNAGIVTGKKLLD----CSDEEIQKTFDVN 145 (300)
T ss_pred HHHHHH----HHHhcCCceEEEeccccccCCCccC----CCHHHHHHHHHHh
Confidence 764443 33444566555543 2234444444 3566776644443
No 292
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=20.35 E-value=3.1e+02 Score=26.14 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=33.8
Q ss_pred HhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCE
Q 018048 247 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319 (361)
Q Consensus 247 tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~ 319 (361)
.|.++++|+++++-.+- . +.-.++-+.||...+.++++. +...+++.+.+.+.+.+++.
T Consensus 75 ~a~~~Gl~~~i~vp~~~-~-----------~~k~~~~~~~GA~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~ 133 (298)
T TIGR01139 75 VAAARGYKLILTMPETM-S-----------IERRKLLKAYGAELVLTPGAE--GMKGAIAKAEEIAASTPNSY 133 (298)
T ss_pred HHHHcCCeEEEEeCCcc-C-----------HHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhCCCcE
Confidence 44578999888776552 1 112345568999999998763 12223444444444433333
No 293
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=20.16 E-value=73 Score=31.86 Aligned_cols=37 Identities=30% Similarity=0.519 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCCEEEEEEEe---cCCCCCCCCCCCCC
Q 018048 304 VAKEAIERARRGEGPTLVECETY---RFRGHSLADPDELR 340 (361)
Q Consensus 304 al~~Al~~ar~~~gP~lIev~t~---R~~gHs~~Dp~~yR 340 (361)
+++.|++++++.+.|+|||..+. -+.|-+...|.++|
T Consensus 29 ViEAAl~~a~~~~~~vLIEAT~NQVnq~GGYTGMTP~DFr 68 (426)
T COG4573 29 VIEAALRFARASQTPVLIEATSNQVNQFGGYTGMTPADFR 68 (426)
T ss_pred HHHHHHHHHhccCCceEeecccccccccCCcCCCChHHHH
Confidence 56789999999999999999874 34555555565554
No 294
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.06 E-value=6.8e+02 Score=22.88 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=42.8
Q ss_pred CCceEEEEECCCcccCcc-hHHH--HHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHH
Q 018048 223 CDHVTLAFFGDGTCNNGQ-FFEC--LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVL 299 (361)
Q Consensus 223 ~~~~Vv~~~GDGs~~~g~-~~ee--L~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~ 299 (361)
.+..||.+.-||.-+.+. -..+ -.+|+..+++|-.| +++.. ....+..+|+.-|-.++++...+
T Consensus 110 a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytI------giG~~-----d~~~l~~iA~~tgG~~F~A~d~~-- 176 (191)
T cd01455 110 FDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVI------FIGSL-----SDEADQLQRELPAGKAFVCMDTS-- 176 (191)
T ss_pred CCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEE------EecCC-----CHHHHHHHHhCCCCcEEEeCCHH--
Confidence 356788888999975332 2333 46777888885544 33321 12235566777789999986543
Q ss_pred HHHHHHH
Q 018048 300 KVREVAK 306 (361)
Q Consensus 300 ~v~~al~ 306 (361)
++.+.++
T Consensus 177 ~L~~iy~ 183 (191)
T cd01455 177 ELPHIMQ 183 (191)
T ss_pred HHHHHHH
Confidence 4443333
Done!