Your job contains 1 sequence.
>018049
MSDGGGESGSKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAV
RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELI
QYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPS
QNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPFLS
APLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRFCESR
EEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDERKGDLKI
F
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018049
(361 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076567 - symbol:AT3G02160 species:3702 "Arabi... 641 8.8e-63 1
TAIR|locus:2180852 - symbol:AT5G15570 "AT5G15570" species... 567 6.1e-55 1
TAIR|locus:2116149 - symbol:TAF8 "TBP-associated factor 8... 436 2.6e-45 2
TAIR|locus:2197530 - symbol:AT1G31240 species:3702 "Arabi... 235 9.2e-20 1
MGI|MGI:1926879 - symbol:Taf8 "TAF8 RNA polymerase II, TA... 101 6.4e-08 2
RGD|1308423 - symbol:Taf8 "TAF8 RNA polymerase II, TATA b... 102 9.9e-08 2
RGD|2324594 - symbol:Taf3 "TAF3 RNA polymerase II, TATA b... 126 1.4e-07 2
UNIPROTKB|Q6QI09 - symbol:Taf3 "ATP synthase gamma chain"... 126 1.4e-07 2
UNIPROTKB|E2RN76 - symbol:TAF8 "Uncharacterized protein" ... 102 2.1e-07 2
UNIPROTKB|Q7Z7C8 - symbol:TAF8 "Transcription initiation ... 102 2.1e-07 2
ZFIN|ZDB-GENE-030131-6406 - symbol:taf3 "TAF3 RNA polymer... 128 3.6e-07 2
UNIPROTKB|A7MAZ4 - symbol:TAF8 "Transcription initiation ... 102 4.2e-07 2
MGI|MGI:2388097 - symbol:Taf3 "TAF3 RNA polymerase II, TA... 123 1.4e-06 2
UNIPROTKB|Q5VWG9 - symbol:TAF3 "Transcription initiation ... 122 3.6e-06 2
UNIPROTKB|F1PI56 - symbol:TAF3 "Uncharacterized protein" ... 122 3.6e-06 2
UNIPROTKB|E1BIA9 - symbol:TAF3 "Uncharacterized protein" ... 122 5.8e-06 2
UNIPROTKB|Q5F489 - symbol:TAF3 "Transcription initiation ... 115 1.1e-05 2
UNIPROTKB|Q5ZMS1 - symbol:TAF8 "Transcription initiation ... 109 2.2e-05 2
ZFIN|ZDB-GENE-040426-1013 - symbol:taf8 "TAF8 RNA polymer... 101 4.7e-05 2
UNIPROTKB|F1NMN6 - symbol:TAF8 "Transcription initiation ... 109 0.00010 2
FB|FBgn0022724 - symbol:Taf8 "TBP-associated factor 8" sp... 98 0.00013 2
>TAIR|locus:2076567 [details] [associations]
symbol:AT3G02160 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC009755 EMBL:AC011664
UniGene:At.75162 InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
KO:K14649 HOGENOM:HOG000240226 ProtClustDB:CLSN2685190
EMBL:BT015767 EMBL:BT020172 EMBL:AK226400 IPI:IPI00517297
RefSeq:NP_186865.1 ProteinModelPortal:Q9S7R9 PRIDE:Q9S7R9
EnsemblPlants:AT3G02160.1 GeneID:821295 KEGG:ath:AT3G02160
TAIR:At3g02160 eggNOG:NOG312984 InParanoid:Q9S7R9 OMA:ICESVEV
PhylomeDB:Q9S7R9 Genevestigator:Q9S7R9 Uniprot:Q9S7R9
Length = 397
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 154/377 (40%), Positives = 215/377 (57%)
Query: 1 MSDGGGESGSKHQQPHTKRK-FSGDDFSQAIAKVAVAQICERV------------G--FQ 45
M++G GE GS+ ++ H KRK F G+DF+ +IA++AVAQICE V G F
Sbjct: 17 MNNGVGEGGSQQRELHGKRKLFRGNDFAFSIARMAVAQICESVEVNPYQESQTREGVRFS 76
Query: 46 TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASD 105
+FQ+SAL L D+AV+YI S+GK A+ YANL+GR +GN DI Q LEDLG GF+G SD
Sbjct: 77 SFQESALDTLTDVAVQYIQSIGKTAHLYANLAGRVDGNSLDILQALEDLGSGLGFAGVSD 136
Query: 106 INHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAW 165
+HCLA SG+V+++I+Y EA ++PF Y++P FP K++KP SF ++G EPP E IP W
Sbjct: 137 TDHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFSKEKKPAPSFSEVGAEPPDEHIPVW 196
Query: 166 LPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGD 225
LPAFP+ + S N + E G M++S R E SS G+
Sbjct: 197 LPAFPETELCDRSEETNAATIEGEIPSKENGSSLPSMQLSFDGGGRL--EIHKSSKDVGE 254
Query: 226 SSKEKKTVESNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNH-ISVMET 284
S++ VE N FL+APL F EK VS VV P +LS EV N V KHV +NH I ++E
Sbjct: 255 STEA--VVEGNLFLTAPLRFVEKNVSPVVRPLELSNEVVRTNHVPDKHVRNNHHIPILEA 312
Query: 285 FAPALEAM-KNRFCESREEQK-NIQLDQRPPVQFKIXXXXXXXXXXXXXXXQNMDGGKID 342
AP+ + KN S++ +K ++ + V+FKI Q +G
Sbjct: 313 SAPSDKINNKNWLAISKDVEKVDVARKELTLVRFKIGTTKRSMCLAKNRSFQE-EG---- 367
Query: 343 PWFCKENENDERKGDLK 359
WF + + E+ ++K
Sbjct: 368 -WFQEGEDKREKTSEIK 383
>TAIR|locus:2180852 [details] [associations]
symbol:AT5G15570 "AT5G15570" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AL391143
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576 KO:K14649
IPI:IPI00533085 PIR:T51535 RefSeq:NP_197061.1 UniGene:At.31783
ProteinModelPortal:Q9LF25 EnsemblPlants:AT5G15570.1 GeneID:831410
KEGG:ath:AT5G15570 TAIR:At5g15570 eggNOG:NOG267471
HOGENOM:HOG000240226 InParanoid:Q9LF25 OMA:GNDFAYA PhylomeDB:Q9LF25
ProtClustDB:CLSN2685190 Genevestigator:Q9LF25 Uniprot:Q9LF25
Length = 381
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 131/327 (40%), Positives = 188/327 (57%)
Query: 1 MSDGGGESGSKHQQPHTKRKFS-GDDFSQAIAKVAVAQICERV-------------G--F 44
M +GGGE GS+ ++ KR S G+DF+ A+A++A AQICE V G F
Sbjct: 1 MINGGGEGGSQRRELQGKRSMSRGNDFAYALARMATAQICESVEINSYQESSQSREGLRF 60
Query: 45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGAS 104
+FQ++AL L D+ ++YI ++GK A FY N++GR E N DI Q LEDLG GF GA
Sbjct: 61 SSFQETALETLTDVVIQYIQNIGKTAQFYVNMAGRVESNALDIVQALEDLGSGLGFDGAH 120
Query: 105 DINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPA 164
D+ HCLA SG+V+++I+Y EA ++PF Y++P FP + ++P SF IG EPP E IP
Sbjct: 121 DVEHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFNRGKRPAPSFSDIGVEPPDEHIPV 180
Query: 165 WLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESG---PSSF 221
WLPAFP+ T + S+ + +KIE Q R S++++Q+ S
Sbjct: 181 WLPAFPE--TKMSNGSE-----EINVDKIERDVQSRDNGSSLMSVQQSVDVDRLKVQKSM 233
Query: 222 VHGDSSKEKKTVESNPFLSAPLHFEEKEVS--SVVLPAKLSKEVALQNPVAKKHV-VDNH 278
D K + E NPFL+AP+ EK VS VV P++L KE N + +KH+ + +H
Sbjct: 234 DQKDVQKPIEEPEGNPFLAAPIWVGEKNVSLSRVVCPSELRKEEISTNHLPEKHMSMSHH 293
Query: 279 ISVMETFAPALEAM-KNRFCESREEQK 304
I +E +A + + KNR +EQK
Sbjct: 294 IPALEAYALSDKINDKNRLAGMEDEQK 320
>TAIR|locus:2116149 [details] [associations]
symbol:TAF8 "TBP-associated factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009072 EMBL:CP002687
SUPFAM:SSF47113 EMBL:AL035521 EMBL:AL161585 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 KO:K14649 InterPro:IPR019473
Pfam:PF10406 EMBL:AF360178 EMBL:AY039994 EMBL:AY463623
IPI:IPI00537362 PIR:T04780 RefSeq:NP_567964.1 UniGene:At.2617
ProteinModelPortal:Q9SYZ9 SMR:Q9SYZ9 IntAct:Q9SYZ9 STRING:Q9SYZ9
EnsemblPlants:AT4G34340.1 GeneID:829584 KEGG:ath:AT4G34340
TAIR:At4g34340 InParanoid:Q9SYZ9 OMA:SEAHTEW PhylomeDB:Q9SYZ9
ProtClustDB:CLSN2917667 Genevestigator:Q9SYZ9 Uniprot:Q9SYZ9
Length = 353
Score = 436 (158.5 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 90/191 (47%), Positives = 126/191 (65%)
Query: 25 DFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNV 84
+FS A AK AVAQ+CE VG++ F+ AL L+ A++YI +GK A +ANL+GR++ NV
Sbjct: 25 EFSHAAAKAAVAQVCESVGYENFKDPALESLSGFALQYILQLGKTATSFANLTGRSQCNV 84
Query: 85 FDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPV-VKD 143
FDI L+DL + G G S + L S +RE+I + N + +VPF+ +P FPV + D
Sbjct: 85 FDIILALDDLTDNNGEQGISSESCSLGRSIKLREIIDFVNSSEEVPFSQPLPSFPVAISD 144
Query: 144 RKPKS--SFLQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRK 201
R K SF++IGE PP + IP WLPAFPDP TY E+P ER SD +KIE +Q+RK
Sbjct: 145 RSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQARQRRK 204
Query: 202 MEMSMVNLQRQ 212
E ++++LQR+
Sbjct: 205 AERALLSLQRK 215
Score = 57 (25.1 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 279 ISVMETFAPALEAMKNRFC-ESREEQK 304
+SV+E FAPA+EA ++ F E+ E K
Sbjct: 261 LSVIEAFAPAMEAARDGFSSEAHTEWK 287
>TAIR|locus:2197530 [details] [associations]
symbol:AT1G31240 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP002684 EMBL:AC004793 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 KO:K14649 EMBL:BT010198 EMBL:AK229436 IPI:IPI00531567
RefSeq:NP_174409.1 UniGene:At.40389 ProteinModelPortal:Q9SA19
IntAct:Q9SA19 DNASU:840012 EnsemblPlants:AT1G31240.1 GeneID:840012
KEGG:ath:AT1G31240 eggNOG:NOG296492 OMA:IAVSQIC
ProtClustDB:CLSN2682368 Genevestigator:Q9SA19 Uniprot:Q9SA19
Length = 277
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 11 KHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAA 70
K ++ + S +FS ++ K+AV+QIC+ +G++ SAL L +++ S+ + A
Sbjct: 11 KFEETSDQSPTSTAEFSFSLTKIAVSQICQSIGYKATDASALNTLTLTTTKFLQSLAELA 70
Query: 71 NFYANLSGRAEGNVFDIFQGLEDLGLDQG--FSGAS---DI-NHCLASSGIVRELIQYAN 124
+ ++N + R E N+FDI GL+D+ L F G S DI + CL S ++R L +
Sbjct: 71 SSFSNTANRTEVNLFDIVNGLQDIALSTSDCFPGGSTVHDIESQCLIKSAVLRNLSDFVT 130
Query: 125 EATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNER 184
A ++PFA +P + + + +PAWLP FPD + S++ R
Sbjct: 131 YAPEIPFAKPLPRRERDGSFGGDLDHVAVTRSVDVTSVPAWLPPFPDSSLCSDRCSKDNR 190
Query: 185 ASDSYTE 191
SD E
Sbjct: 191 -SDHLWE 196
>MGI|MGI:1926879 [details] [associations]
symbol:Taf8 "TAF8 RNA polymerase II, TATA box binding
protein (TBP)-associated factorq" species:10090 "Mus musculus"
[GO:0001833 "inner cell mass cell proliferation" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005669 "transcription
factor TFIID complex" evidence=ISA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0045598 "regulation of fat cell differentiation"
evidence=ISA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=ISO] [GO:0051457 "maintenance of
protein location in nucleus" evidence=ISO] InterPro:IPR009072
MGI:MGI:1926879 GO:GO:0048471 GO:GO:0045893 GO:GO:0030154
GO:GO:0006351 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598
GO:GO:0051457 GO:GO:0001833 GO:GO:0005669 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 CTD:129685 eggNOG:NOG257256
GeneTree:ENSGT00390000017567 HOGENOM:HOG000007034
HOVERGEN:HBG105411 KO:K14649 OMA:TENLALH OrthoDB:EOG4V6ZH6
InterPro:IPR019473 Pfam:PF10406 EMBL:AF222802 EMBL:AK045108
EMBL:AK049949 EMBL:AK076486 EMBL:AK086656 EMBL:AK162110
EMBL:BC057895 IPI:IPI00459354 IPI:IPI00880809 IPI:IPI00881010
IPI:IPI00881023 IPI:IPI00881150 RefSeq:NP_071298.1
UniGene:Mm.275901 ProteinModelPortal:Q9EQH4 SMR:Q9EQH4
STRING:Q9EQH4 PhosphoSite:Q9EQH4 PRIDE:Q9EQH4 DNASU:63856
Ensembl:ENSMUST00000067103 GeneID:63856 KEGG:mmu:63856
UCSC:uc008cvh.1 UCSC:uc008cvi.1 UCSC:uc008cvj.1 InParanoid:Q9EQH4
NextBio:319779 Bgee:Q9EQH4 Genevestigator:Q9EQH4 Uniprot:Q9EQH4
Length = 308
Score = 101 (40.6 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
SDI L G V L YA + + A + + PV PK+ L G+ P
Sbjct: 89 SDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNRPHPP 142
Query: 162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
IP+ P FPDP TY ++P+ E SD + + Q+R +E + L R +++G +
Sbjct: 143 HIPSHFPEFPDPHTYIKTPTYREPVSDYQILREKAASQRRDVERA---LTRFMAKTGETQ 199
Query: 221 FVHGDSSKEKKTVESNPF 238
+ D + + PF
Sbjct: 200 SLFKDDVSTFPLIAARPF 217
Score = 91 (37.1 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 22/101 (21%), Positives = 51/101 (50%)
Query: 1 MSDGGGESGSKHQQPHTKRKFS-GDDFSQA---IAKVAVAQICERVGFQTFQQSALGKLA 56
M+D G +P +K+ + D++ A +V V+ + GF++ +++++ L
Sbjct: 1 MADTAAGPGGSGTRPGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLT 60
Query: 57 DIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97
++ YI+ +G++A Y + R + + DI L ++G +
Sbjct: 61 EMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFN 101
>RGD|1308423 [details] [associations]
symbol:Taf8 "TAF8 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0001833 "inner cell mass cell proliferation" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005669 "transcription
factor TFIID complex" evidence=IEA;ISO] [GO:0045598 "regulation of
fat cell differentiation" evidence=IEA;ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009072 RGD:1308423 GO:GO:0048471 GO:GO:0045893
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598 GO:GO:0051457
GO:GO:0001833 EMBL:CH473987 GO:GO:0005669 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 CTD:129685 GeneTree:ENSGT00390000017567
KO:K14649 OMA:TENLALH OrthoDB:EOG4V6ZH6 InterPro:IPR019473
Pfam:PF10406 IPI:IPI00371755 RefSeq:NP_001101667.1 UniGene:Rn.35557
Ensembl:ENSRNOT00000020499 GeneID:316216 KEGG:rno:316216
UCSC:RGD:1308423 NextBio:670552 Uniprot:D3ZY89
Length = 308
Score = 102 (41.0 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
SDI L G V L YA + + A + + PV PK+ L G+ P
Sbjct: 89 SDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNRPHPP 142
Query: 162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
IP+ P FPDP TY ++P+ E SD + + Q+R +E + L R +++G +
Sbjct: 143 HIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LTRFMAKTGETQ 199
Query: 221 FVHGDSSKEKKTVESNPF 238
+ D + + PF
Sbjct: 200 SLFKDDVSTFPLIAARPF 217
Score = 88 (36.0 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 22/101 (21%), Positives = 50/101 (49%)
Query: 1 MSDGGGESGSKHQQPHTKRKFS-GDDFSQA---IAKVAVAQICERVGFQTFQQSALGKLA 56
M+D G +P K+ + D++ A +V V+ + GF++ +++++ L
Sbjct: 1 MADTATGPGGSGTRPGNKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLT 60
Query: 57 DIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97
++ YI+ +G++A Y + R + + DI L ++G +
Sbjct: 61 EMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFN 101
>RGD|2324594 [details] [associations]
symbol:Taf3 "TAF3 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 140kDa" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0002039 "p53 binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005669
"transcription factor TFIID complex" evidence=ISO] [GO:0005753
"mitochondrial proton-transporting ATP synthase complex"
evidence=IEA] [GO:0015986 "ATP synthesis coupled proton transport"
evidence=IEA] [GO:0043433 "negative regulation of sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0045261 "proton-transporting ATP synthase complex, catalytic
core F(1)" evidence=IEA] [GO:0046933 "proton-transporting ATP
synthase activity, rotational mechanism" evidence=IEA] [GO:0046961
"proton-transporting ATPase activity, rotational mechanism"
evidence=IEA] [GO:0051457 "maintenance of protein location in
nucleus" evidence=ISO] InterPro:IPR000131 Pfam:PF00231
PRINTS:PR00126 RGD:2324594 RGD:620011 GO:GO:0046933 GO:GO:0046961
GO:GO:0015986 GO:GO:0045261 InterPro:IPR023632 InterPro:IPR023633
PANTHER:PTHR11693 SUPFAM:SSF52943 TIGRFAMs:TIGR01146
PROSITE:PS00153 GeneTree:ENSGT00390000006837 OrthoDB:EOG4FJ899
UniGene:Rn.63959 InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
EMBL:AY539950 IPI:IPI00454288 SMR:Q6QI09 STRING:Q6QI09
Ensembl:ENSRNOT00000041346 HOGENOM:HOG000143453
Genevestigator:Q6QI09 Uniprot:Q6QI09
Length = 607
Score = 126 (49.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 25/88 (28%), Positives = 53/88 (60%)
Query: 10 SKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKA 69
SK + +R+ + +S+++ +V+VAQIC+ +G+ + Q SA L D+ RY+ +G+
Sbjct: 322 SKMDGFYQQRRGMCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRG 381
Query: 70 ANFYANLSGRAEGNVFDIFQGLEDLGLD 97
+ Y+ L GR + + D+ + + +G++
Sbjct: 382 CHRYSELYGRTDPILDDVGEAFQLMGVN 409
Score = 69 (29.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 29/96 (30%), Positives = 40/96 (41%)
Query: 105 DINHCLASSGI-VRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIE--D 161
D+ G+ + EL Y + V F + IP FPV K+ + F Q G + E D
Sbjct: 398 DVGEAFQLMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNSVLQ--FPQPGSKDAEERKD 455
Query: 162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELG 196
IP +LP Q P Q SY +E+G
Sbjct: 456 YIPDYLPPIVSSQEGMPGPLQRP----SYFLGLEIG 487
>UNIPROTKB|Q6QI09 [details] [associations]
symbol:Taf3 "ATP synthase gamma chain" species:10116
"Rattus norvegicus" [GO:0015986 "ATP synthesis coupled proton
transport" evidence=IEA] [GO:0046933 "proton-transporting ATP
synthase activity, rotational mechanism" evidence=IEA] [GO:0046961
"proton-transporting ATPase activity, rotational mechanism"
evidence=IEA] InterPro:IPR000131 Pfam:PF00231 PRINTS:PR00126
RGD:2324594 RGD:620011 GO:GO:0046933 GO:GO:0046961 GO:GO:0015986
GO:GO:0045261 InterPro:IPR023632 InterPro:IPR023633
PANTHER:PTHR11693 SUPFAM:SSF52943 TIGRFAMs:TIGR01146
PROSITE:PS00153 GeneTree:ENSGT00390000006837 OrthoDB:EOG4FJ899
UniGene:Rn.63959 InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
EMBL:AY539950 IPI:IPI00454288 SMR:Q6QI09 STRING:Q6QI09
Ensembl:ENSRNOT00000041346 HOGENOM:HOG000143453
Genevestigator:Q6QI09 Uniprot:Q6QI09
Length = 607
Score = 126 (49.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 25/88 (28%), Positives = 53/88 (60%)
Query: 10 SKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKA 69
SK + +R+ + +S+++ +V+VAQIC+ +G+ + Q SA L D+ RY+ +G+
Sbjct: 322 SKMDGFYQQRRGMCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRG 381
Query: 70 ANFYANLSGRAEGNVFDIFQGLEDLGLD 97
+ Y+ L GR + + D+ + + +G++
Sbjct: 382 CHRYSELYGRTDPILDDVGEAFQLMGVN 409
Score = 69 (29.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 29/96 (30%), Positives = 40/96 (41%)
Query: 105 DINHCLASSGI-VRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIE--D 161
D+ G+ + EL Y + V F + IP FPV K+ + F Q G + E D
Sbjct: 398 DVGEAFQLMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNSVLQ--FPQPGSKDAEERKD 455
Query: 162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELG 196
IP +LP Q P Q SY +E+G
Sbjct: 456 YIPDYLPPIVSSQEGMPGPLQRP----SYFLGLEIG 487
>UNIPROTKB|E2RN76 [details] [associations]
symbol:TAF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR009072 Gene3D:1.10.20.10 SUPFAM:SSF47113
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
GeneTree:ENSGT00390000017567 OMA:TENLALH InterPro:IPR019473
Pfam:PF10406 EMBL:AAEX03008324 Ensembl:ENSCAFT00000002559
Uniprot:E2RN76
Length = 310
Score = 102 (41.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
SDI L G V L YA + + A + + PV PK+ L G+ P
Sbjct: 91 SDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNRPHPP 144
Query: 162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
IP+ P FPDP TY ++P+ E SD + + Q+R +E + L R +++G +
Sbjct: 145 HIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LTRFMAKTGETQ 201
Query: 221 FVHGDSSKEKKTVESNPF 238
+ D + + PF
Sbjct: 202 SLFKDDVSTFPLIAARPF 219
Score = 85 (35.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 21/97 (21%), Positives = 48/97 (49%)
Query: 4 GGGESGSKHQQPHTKRKFSGDDFSQA---IAKVAVAQICERVGFQTFQQSALGKLADIAV 60
G G SG++ + D++ A +V V+ + GF++ +++++ L ++
Sbjct: 9 GAGGSGTRSGSKQSTNP--ADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLTEMLQ 66
Query: 61 RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97
YI+ +G++A Y + R + + DI L ++G +
Sbjct: 67 SYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFN 103
>UNIPROTKB|Q7Z7C8 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9606 "Homo sapiens" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0001833 "inner cell mass cell
proliferation" evidence=IEA] [GO:0005669 "transcription factor
TFIID complex" evidence=IDA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IDA]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009072 GO:GO:0048471 GO:GO:0045893 GO:GO:0030154
GO:GO:0006351 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598
GO:GO:0051457 GO:GO:0001833 EMBL:AL513008 GO:GO:0005669
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576 CTD:129685
eggNOG:NOG257256 HOGENOM:HOG000007034 HOVERGEN:HBG105411 KO:K14649
OMA:TENLALH OrthoDB:EOG4V6ZH6 InterPro:IPR019473 Pfam:PF10406
EMBL:AF465841 EMBL:AK057383 EMBL:AL512274 EMBL:BC119678
EMBL:BC119679 IPI:IPI00065313 IPI:IPI00878968 IPI:IPI00879798
RefSeq:NP_612639.2 UniGene:Hs.520122 ProteinModelPortal:Q7Z7C8
SMR:Q7Z7C8 IntAct:Q7Z7C8 STRING:Q7Z7C8 PhosphoSite:Q7Z7C8
DMDM:74723384 PaxDb:Q7Z7C8 PRIDE:Q7Z7C8 Ensembl:ENST00000372977
Ensembl:ENST00000372978 Ensembl:ENST00000372982
Ensembl:ENST00000456846 Ensembl:ENST00000494547 GeneID:129685
KEGG:hsa:129685 UCSC:uc003orr.3 UCSC:uc003ort.3 UCSC:uc003orv.1
GeneCards:GC06P042018 HGNC:HGNC:17300 HPA:HPA031734 MIM:609514
neXtProt:NX_Q7Z7C8 PharmGKB:PA162405144 ChiTaRS:TAF8
GenomeRNAi:129685 NextBio:82629 ArrayExpress:Q7Z7C8 Bgee:Q7Z7C8
CleanEx:HS_TAF8 Genevestigator:Q7Z7C8 Uniprot:Q7Z7C8
Length = 310
Score = 102 (41.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
SDI L G V L YA + + A + + PV PK+ L G+ P
Sbjct: 91 SDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNRPHPP 144
Query: 162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
IP+ P FPDP TY ++P+ E SD + + Q+R +E + L R +++G +
Sbjct: 145 HIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LTRFMAKTGETQ 201
Query: 221 FVHGDSSKEKKTVESNPF 238
+ D + + PF
Sbjct: 202 SLFKDDVSTFPLIAARPF 219
Score = 85 (35.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 21/97 (21%), Positives = 48/97 (49%)
Query: 4 GGGESGSKHQQPHTKRKFSGDDFSQA---IAKVAVAQICERVGFQTFQQSALGKLADIAV 60
G G SG++ + D++ A +V V+ + GF++ +++++ L ++
Sbjct: 9 GAGGSGTRSGSKQSTNP--ADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLTEMLQ 66
Query: 61 RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97
YI+ +G++A Y + R + + DI L ++G +
Sbjct: 67 SYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFN 103
>ZFIN|ZDB-GENE-030131-6406 [details] [associations]
symbol:taf3 "TAF3 RNA polymerase II, TATA box
binding protein (TBP)-associated facto" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0044212
"transcription regulatory region DNA binding" evidence=IPI]
[GO:0030097 "hemopoiesis" evidence=IMP] [GO:0005669 "transcription
factor TFIID complex" evidence=ISS] InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016 SMART:SM00249
ZFIN:ZDB-GENE-030131-6406 GO:GO:0046872 GO:GO:0008270 GO:GO:0044212
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0030097 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576 CTD:83860
HOGENOM:HOG000231905 HOVERGEN:HBG083188 KO:K14650 OMA:FTPKTKT
GeneTree:ENSGT00680000099961 EMBL:BX640594 EMBL:BX927352
IPI:IPI00492543 RefSeq:NP_001036209.1 UniGene:Dr.81379
Ensembl:ENSDART00000066929 GeneID:334474 KEGG:dre:334474
InParanoid:Q5RH27 NextBio:20810418 Uniprot:Q5RH27
Length = 898
Score = 128 (50.1 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
+ F++++ +V+VAQ+C+ VG+ Q SA L+D+ RY+ + K+ + Y+ L GR +
Sbjct: 3 ESFARSLLRVSVAQMCQAVGWDAVQLSACDLLSDVLERYVQQLAKSCHRYSELYGRTDPG 62
Query: 84 VFDIFQGLEDLGL 96
+ D+ Q LG+
Sbjct: 63 LSDVDQAFGFLGV 75
Score = 67 (28.6 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 22/109 (20%), Positives = 43/109 (39%)
Query: 102 GASDINHCLASSGI-VRELIQYANEATDVPFAYAIPHFPVVKD---RKPKSSFLQIGEEP 157
G SD++ G+ + EL Y N + + IP FP+ K + P + F +
Sbjct: 62 GLSDVDQAFGFLGVSIAELEDYVNNVEPIGYPQTIPQFPISKSSVLQFPAAGFDTDARDA 121
Query: 158 PIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSM 206
+ ++P + P + + E + ++G M++SM
Sbjct: 122 LRGERRDYIPEYFPPLVSLQEDEEEEEPVPA-----DMGTSAEAMQVSM 165
Score = 49 (22.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/99 (21%), Positives = 40/99 (40%)
Query: 156 EPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSE 215
EPP P+ P P P ++ + +K++ + + + L+ + E
Sbjct: 449 EPPYLSSPSDSPPTPPPPLKLTQERKDSPTGNLLKKKLKKDIKTKLKKKDKERLKEKGKE 508
Query: 216 SGPSSFVHGDSSKEKKT--VESN----PFLSAPLHFEEK 248
G + + + +EK+ VE N P LS + EE+
Sbjct: 509 KGKNKEKNKEKKREKERGQVEENKMPWPELSLVVGGEER 547
Score = 39 (18.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 18/80 (22%), Positives = 28/80 (35%)
Query: 157 PPIEDIPAWLP--AFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFS 214
PP+ P LP FP P+ ++ +K E K + K +R
Sbjct: 622 PPL---PPILPDKLFPHPKDIKSKDKDKKKDKKEKKKKKEKEKDREKEREKEREKERTKE 678
Query: 215 ESGPSSFVHGDSSKEKKTVE 234
+ D K++KT E
Sbjct: 679 KERDKEEKKKDKEKKEKTKE 698
Score = 37 (18.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 157 PPIEDIPAWLPAFPDPQ 173
PP+ PA PA P P+
Sbjct: 771 PPVLPPPAPPPATPPPR 787
>UNIPROTKB|A7MAZ4 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9913 "Bos taurus" [GO:0051457 "maintenance of protein
location in nucleus" evidence=IEA] [GO:0048471 "perinuclear region
of cytoplasm" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045598 "regulation
of fat cell differentiation" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IEA] [GO:0001833
"inner cell mass cell proliferation" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009072
GO:GO:0048471 GO:GO:0045893 GO:GO:0030154 GO:GO:0006351
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598 GO:GO:0051457
GO:GO:0001833 GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 EMBL:BC151255 IPI:IPI00706402 RefSeq:NP_001094670.1
UniGene:Bt.102140 STRING:A7MAZ4 PRIDE:A7MAZ4
Ensembl:ENSBTAT00000036067 GeneID:539938 KEGG:bta:539938 CTD:129685
eggNOG:NOG257256 GeneTree:ENSGT00390000017567 HOGENOM:HOG000007034
HOVERGEN:HBG105411 InParanoid:A7MAZ4 KO:K14649 OMA:TENLALH
OrthoDB:EOG4V6ZH6 NextBio:20878312 InterPro:IPR019473 Pfam:PF10406
Uniprot:A7MAZ4
Length = 310
Score = 102 (41.0 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
SDI L G V L YA + + A + + PV PK+ L G+ P
Sbjct: 91 SDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNRPHPP 144
Query: 162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
IP+ P FPDP TY ++P+ E SD + + Q+R +E + L R +++G +
Sbjct: 145 HIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LTRFMAKTGETQ 201
Query: 221 FVHGDSSKEKKTVESNPF 238
+ D + + PF
Sbjct: 202 SLFKDDVSTFPLIAARPF 219
Score = 82 (33.9 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 15/66 (22%), Positives = 37/66 (56%)
Query: 32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
+V V+ + GF++ +++++ L ++ YI+ +G++A Y + R + + DI L
Sbjct: 38 QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97
Query: 92 EDLGLD 97
++G +
Sbjct: 98 VEMGFN 103
>MGI|MGI:2388097 [details] [associations]
symbol:Taf3 "TAF3 RNA polymerase II, TATA box binding
protein (TBP)-associated factor" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO;IDA] [GO:0002039 "p53 binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005669 "transcription
factor TFIID complex" evidence=ISO;ISA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO;IDA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051457 "maintenance of protein
location in nucleus" evidence=ISO] InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016 SMART:SM00249
MGI:MGI:2388097 GO:GO:0046872 GO:GO:0008270 GO:GO:0000122
GO:GO:0006366 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0043433 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0051457 eggNOG:NOG308418 GO:GO:0005669
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576 CTD:83860
HOGENOM:HOG000231905 HOVERGEN:HBG083188 KO:K14650 OMA:FTPKTKT
EMBL:AJ292189 EMBL:AK084574 EMBL:AK136045 EMBL:AK154372
EMBL:BC089030 IPI:IPI00756399 IPI:IPI00757994 RefSeq:NP_082024.2
UniGene:Mm.401602 UniGene:Mm.86343 PDB:2K16 PDB:2K17 PDBsum:2K16
PDBsum:2K17 ProteinModelPortal:Q5HZG4 SMR:Q5HZG4 IntAct:Q5HZG4
STRING:Q5HZG4 PhosphoSite:Q5HZG4 PaxDb:Q5HZG4 PRIDE:Q5HZG4
Ensembl:ENSMUST00000026888 GeneID:209361 KEGG:mmu:209361
UCSC:uc008ihk.2 GeneTree:ENSGT00680000099961 InParanoid:Q5HZG4
EvolutionaryTrace:Q5HZG4 NextBio:372647 Bgee:Q5HZG4
Genevestigator:Q5HZG4 GermOnline:ENSMUSG00000025782 Uniprot:Q5HZG4
Length = 932
Score = 123 (48.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 22/74 (29%), Positives = 47/74 (63%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
+ +S+++ +V+VAQIC+ +G+ + Q SA L D+ RY+ +G+ + Y+ L GR +
Sbjct: 3 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62
Query: 84 VFDIFQGLEDLGLD 97
+ D+ + + +G++
Sbjct: 63 LDDVGEAFQLMGVN 76
Score = 67 (28.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 36/137 (26%), Positives = 54/137 (39%)
Query: 146 PKSSFLQIGEEPPIEDIPAWLPAFPD--PQTYFES---PSQNERASDSYTEKI----ELG 196
PK L + P +PA LPAF P+ FE P + ER D +K E
Sbjct: 660 PKEMALPLFS-PSAVRVPAMLPAFSPMLPEKLFEEKEKPKEKERKKDKKEKKKKKEKEKE 718
Query: 197 KQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPFLSA-PLHF---EEKEVSS 252
K++++ E +R+ E H E +P + L ++K V S
Sbjct: 719 KEKKEREREKERREREKREKEKEKHKHEKIKVEPVIPAPSPVIPRLTLRVGAGQDKIVIS 778
Query: 253 VVLPAKLSKEV-ALQNP 268
V+PA +K +L P
Sbjct: 779 KVVPAPEAKPAPSLNRP 795
Score = 64 (27.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 27/109 (24%), Positives = 44/109 (40%)
Query: 105 DINHCLASSGI-VRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIE--D 161
D+ G+ + EL Y + V F + IP FPV K+ + F Q G + E D
Sbjct: 65 DVGEAFQLMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQ--FPQPGSKDAEERKD 122
Query: 162 -IPAWLPAFPDPQTYFESPS-QNERASDSYTEKIELGKQQRKMEMSMVN 208
IP +LP Q E + + + ++ L + E ++N
Sbjct: 123 YIPDYLPPIVSSQEEEEEEQVPTDGGTSAEAMQVPLEEDDEMEEEEVIN 171
>UNIPROTKB|Q5VWG9 [details] [associations]
symbol:TAF3 "Transcription initiation factor TFIID subunit
3" species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IDA] InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016 SMART:SM00249
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0043433 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0051457 EMBL:AL353754 eggNOG:NOG308418 GO:GO:0005669
EMBL:AL390294 InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
CTD:83860 HOGENOM:HOG000231905 HOVERGEN:HBG083188 KO:K14650
OrthoDB:EOG4V9TQC EMBL:AJ292190 EMBL:AL159172 EMBL:BC017320
EMBL:BC045106 EMBL:BC073884 EMBL:BC062352 EMBL:AL117661
IPI:IPI00853240 PIR:T17342 RefSeq:NP_114129.1 UniGene:Hs.527688
UniGene:Hs.709995 ProteinModelPortal:Q5VWG9 SMR:Q5VWG9
IntAct:Q5VWG9 STRING:Q5VWG9 PhosphoSite:Q5VWG9 DMDM:74747393
PaxDb:Q5VWG9 PRIDE:Q5VWG9 DNASU:83860 Ensembl:ENST00000344293
GeneID:83860 KEGG:hsa:83860 UCSC:uc010qbd.2 GeneCards:GC10P007860
H-InvDB:HIX0025228 H-InvDB:HIX0201494 HGNC:HGNC:17303 MIM:606576
neXtProt:NX_Q5VWG9 PharmGKB:PA38222 InParanoid:Q5VWG9 OMA:FTPKTKT
GenomeRNAi:83860 NextBio:72861 ArrayExpress:Q5VWG9 Bgee:Q5VWG9
CleanEx:HS_TAF3 Genevestigator:Q5VWG9 GermOnline:ENSG00000165632
Uniprot:Q5VWG9
Length = 929
Score = 122 (48.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 22/73 (30%), Positives = 46/73 (63%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
+ +S+++ +V+VAQIC+ +G+ + Q SA L D+ RY+ +G+ + Y+ L GR +
Sbjct: 3 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62
Query: 84 VFDIFQGLEDLGL 96
+ D+ + + +G+
Sbjct: 63 LDDVGEAFQLMGV 75
Score = 64 (27.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 27/109 (24%), Positives = 43/109 (39%)
Query: 105 DINHCLASSGI-VRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGE---EPPIE 160
D+ G+ + EL Y + V F + IP FPV K+ + F Q G E E
Sbjct: 65 DVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQ--FPQPGSKDAEERKE 122
Query: 161 DIPAWLPAFPDPQTYFESPS-QNERASDSYTEKIELGKQQRKMEMSMVN 208
IP +LP Q E + + + ++ L + E ++N
Sbjct: 123 YIPDYLPPIVSSQEEEEEEQVPTDGGTSAEAMQVPLEEDDELEEEEIIN 171
Score = 60 (26.2 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 32/133 (24%), Positives = 52/133 (39%)
Query: 146 PKSSFLQIGEEPPIEDIPAWLPAF-PD-PQTYFESPS---QNERASDSYTEKI--ELGKQ 198
PK L + +PA LP+ P P+ FE + E+ D +K E K+
Sbjct: 658 PKELALPLFSPATASRVPAMLPSLLPVLPEKLFEEKEKVKEKEKKKDKKEKKKKKEKEKE 717
Query: 199 QRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPFLSA-PLHF---EEKEVSSVV 254
+++ E +R+ E H E + +P + L ++K V S V
Sbjct: 718 KKEKEREKEKREREKREKEKEKHKHEKIKVEPVALAPSPVIPRLTLRVGAGQDKIVISKV 777
Query: 255 LPAKLSKEVALQN 267
+PA +K QN
Sbjct: 778 VPAPEAKPAPSQN 790
Score = 43 (20.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 16/58 (27%), Positives = 24/58 (41%)
Query: 172 PQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKE 229
PQT + N S + +EKI Q K + + + SE+ P V D + E
Sbjct: 331 PQTPVRPETPNRTPSATLSEKISKETIQVKQIQTPPDAGKLNSENQPKKAVVADKTIE 388
>UNIPROTKB|F1PI56 [details] [associations]
symbol:TAF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051457 "maintenance of protein location in
nucleus" evidence=IEA] [GO:0043433 "negative regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628
PROSITE:PS50016 SMART:SM00249 GO:GO:0046872 GO:GO:0008270
GO:GO:0000122 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0043433 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0051457 GO:GO:0005669 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 CTD:83860 KO:K14650 OMA:FTPKTKT
GeneTree:ENSGT00680000099961 EMBL:AAEX03001297 RefSeq:XP_544263.2
Ensembl:ENSCAFT00000008068 GeneID:487135 KEGG:cfa:487135
Uniprot:F1PI56
Length = 932
Score = 122 (48.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 22/73 (30%), Positives = 46/73 (63%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
+ +S+++ +V+VAQIC+ +G+ + Q SA L D+ RY+ +G+ + Y+ L GR +
Sbjct: 3 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62
Query: 84 VFDIFQGLEDLGL 96
+ D+ + + +G+
Sbjct: 63 LDDVGEAFQLMGV 75
Score = 64 (27.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 25/110 (22%), Positives = 47/110 (42%)
Query: 105 DINHCLASSGI-VRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIP 163
D+ G+ + EL Y + V F + IP FPV K+ + F Q G + E+
Sbjct: 65 DVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQ--FPQPGSKDA-EERK 121
Query: 164 AWLPAFPDPQTYFESPSQNERA-SDSYTE----KIELGKQQRKMEMSMVN 208
++P + P + + E+ +D T ++ L ++ E ++N
Sbjct: 122 EYIPDYMPPIVSSQEEEEEEQVPTDGGTSAEAMQVPLEEEDELEEEEIIN 171
Score = 59 (25.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 28/102 (27%), Positives = 39/102 (38%)
Query: 146 PKSSFLQIGEEPPIEDIPAWLPAFPD--PQTYFES---PSQNERASDSYTEKIELGKQQR 200
PK + L + +PA LPA P FE P + ER D +K + K++
Sbjct: 658 PKDAPLPLFSPAATARVPATLPALSSVLPDKLFEDKEKPKEKERKKDKKEKKKKKEKEKE 717
Query: 201 KMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPFLSAP 242
K E +R+ E EK VE P + AP
Sbjct: 718 K-EKKDKEREREKREREKREKEKEKHRHEKIKVE--PIVPAP 756
Score = 43 (20.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 19/71 (26%), Positives = 28/71 (39%)
Query: 163 PAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQ---QRKMEMSMVNLQRQFSESGPS 219
PA P FP + SP E Y EK +L ++K++ + ++ E
Sbjct: 483 PAVPPGFPYISSPSVSPPTPEPLHKVYEEKTKLPSSVEVKKKLKKELKTKMKK-KEKQRD 541
Query: 220 SFVHGDSSKEK 230
D SKEK
Sbjct: 542 KERERDKSKEK 552
>UNIPROTKB|E1BIA9 [details] [associations]
symbol:TAF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051457 "maintenance of protein location in nucleus"
evidence=IEA] [GO:0043433 "negative regulation of sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0005669 "transcription factor TFIID complex" evidence=IEA]
[GO:0002039 "p53 binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016
SMART:SM00249 GO:GO:0046872 GO:GO:0008270 GO:GO:0000122
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0043433 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0051457 GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 CTD:83860 KO:K14650 OMA:FTPKTKT
GeneTree:ENSGT00680000099961 EMBL:DAAA02035305 EMBL:DAAA02035306
EMBL:DAAA02035307 EMBL:DAAA02035308 IPI:IPI00841386
RefSeq:XP_003586802.1 UniGene:Bt.87954 Ensembl:ENSBTAT00000003674
GeneID:506674 KEGG:bta:506674 ArrayExpress:E1BIA9 Uniprot:E1BIA9
Length = 932
Score = 122 (48.0 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 22/73 (30%), Positives = 46/73 (63%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
+ +S+++ +V+VAQIC+ +G+ + Q SA L D+ RY+ +G+ + Y+ L GR +
Sbjct: 3 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62
Query: 84 VFDIFQGLEDLGL 96
+ D+ + + +G+
Sbjct: 63 LDDVGEAFQLMGV 75
Score = 62 (26.9 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 20/81 (24%), Positives = 35/81 (43%)
Query: 105 DINHCLASSGI-VRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIP 163
D+ G+ + EL Y + V F + IP FPV K+ + F Q G + E+
Sbjct: 65 DVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQ--FPQPGSKDA-EERK 121
Query: 164 AWLPAFPDPQTYFESPSQNER 184
++P + P + + E+
Sbjct: 122 EYIPDYMPPIVSSQEEEEEEQ 142
Score = 48 (22.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 36/147 (24%), Positives = 55/147 (37%)
Query: 136 PHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPD--PQTYFES---PSQNERASDSYT 190
P P+V PK L + I A LP+ P+ FE P + ER D
Sbjct: 650 PPAPLVLP--PKDVALPLFSPAAAMRITAVLPSLTPVLPEKLFEEKEKPKEKERKKDKKE 707
Query: 191 EKI----ELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPFLSA-PLHF 245
+K E K++++ E +R+ E H E +P + L
Sbjct: 708 KKKKKEKEKEKEKKEKEREKEKREREKREKEKERHKHEKIKVEPVVPAPSPVIPRLTLKV 767
Query: 246 ---EEKEVSSVVLPAKLSKEV-ALQNP 268
++K V S V+PA +K +L P
Sbjct: 768 GAGQDKIVISKVVPAPEAKPAPSLNRP 794
>UNIPROTKB|Q5F489 [details] [associations]
symbol:TAF3 "Transcription initiation factor TFIID subunit
3" species:9031 "Gallus gallus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016
SMART:SM00249 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 eggNOG:NOG308418 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 EMBL:AJ851411 IPI:IPI00573245 RefSeq:NP_001026012.1
UniGene:Gga.8090 ProteinModelPortal:Q5F489 SMR:Q5F489 STRING:Q5F489
GeneID:419107 KEGG:gga:419107 CTD:83860 HOGENOM:HOG000231905
HOVERGEN:HBG083188 InParanoid:Q5F489 KO:K14650 OrthoDB:EOG4V9TQC
NextBio:20822213 Uniprot:Q5F489
Length = 930
Score = 115 (45.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
+ +S+ + +V+VAQIC+ +G+ + Q SA L D+ RY+ +G+ + Y L GR +
Sbjct: 3 ETYSRWLLRVSVAQICQALGWDSVQVSACDLLTDVLQRYLQGLGRGCHRYCELYGRTDPI 62
Query: 84 VFDIFQGLEDLGLD 97
+ D+ + +G++
Sbjct: 63 LDDVGDAFKLMGVN 76
Score = 67 (28.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 36/167 (21%), Positives = 66/167 (39%)
Query: 105 DINHCLASSGI-VRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIP 163
D+ G+ + EL Y + V FA+ IP FPV K+ + F Q G + E+
Sbjct: 65 DVGDAFKLMGVNLHELEDYIHNIEPVTFAHQIPSFPVSKNNVLQ--FPQPGSKDA-EERK 121
Query: 164 AWLPAFPDPQTYFESPSQNERA-SDSYTE----KIELGKQQRKMEMSMVNLQRQFSE--- 215
++P + P + + E+ +D T ++ L ++ E +N + S+
Sbjct: 122 EYIPDYMPPIVSSQEEEEEEQVPTDGGTSAEAMQVPLEEEGDMEEDEAINDENYLSKRPL 181
Query: 216 SGPSSFVHGDSSKEKKTVESNPFLSAPLHFEE--KEVSSVVLPAKLS 260
P + + K +V L L E +++ +P LS
Sbjct: 182 ESPDAEEFPPMKRPKLSVSKGDALDGALEPREPLSSINTQKVPPMLS 228
>UNIPROTKB|Q5ZMS1 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9031 "Gallus gallus" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0001833 "inner cell mass cell proliferation"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] [GO:0045598 "regulation of fat cell differentiation"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0051457 "maintenance of protein
location in nucleus" evidence=IEA] GO:GO:0007275 GO:GO:0048471
GO:GO:0045893 GO:GO:0030154 GO:GO:0006351 GO:GO:0045598
GO:GO:0051457 GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
CTD:129685 eggNOG:NOG257256 HOGENOM:HOG000007034 HOVERGEN:HBG105411
KO:K14649 OrthoDB:EOG4V6ZH6 InterPro:IPR019473 Pfam:PF10406
EMBL:AJ719313 IPI:IPI00579339 RefSeq:NP_001026094.1
UniGene:Gga.22333 STRING:Q5ZMS1 GeneID:419929 KEGG:gga:419929
InParanoid:Q5ZMS1 NextBio:20822916 ArrayExpress:Q5ZMS1
Uniprot:Q5ZMS1
Length = 244
Score = 109 (43.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
SDI L G V L YA + + A + + PV PK+ L G+ P
Sbjct: 28 SDIVVTLVEMGFNVETLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNKPHPS 81
Query: 162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
IP + P FPDP TY ++P+ E SD + + Q+R +E + L R +++G +
Sbjct: 82 HIPGYFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LTRFMAKTGETQ 138
Query: 221 FVHGDSSKEKKTVESNPF 238
+ D + + PF
Sbjct: 139 SLFKDDVSTFPLIAARPF 156
Score = 53 (23.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 62 YINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97
YI+ +G++A Y + R + + DI L ++G +
Sbjct: 5 YISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFN 40
>ZFIN|ZDB-GENE-040426-1013 [details] [associations]
symbol:taf8 "TAF8 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:7955 "Danio rerio"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009072 ZFIN:ZDB-GENE-040426-1013 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006355
GO:GO:0006351 Gene3D:1.10.20.10 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 CTD:129685 eggNOG:NOG257256
GeneTree:ENSGT00390000017567 HOGENOM:HOG000007034
HOVERGEN:HBG105411 KO:K14649 OrthoDB:EOG4V6ZH6 InterPro:IPR019473
Pfam:PF10406 EMBL:BC049422 EMBL:BC065457 IPI:IPI00481674
IPI:IPI00882794 RefSeq:NP_956580.1 UniGene:Dr.159222 STRING:Q6P0T2
PRIDE:Q6P0T2 Ensembl:ENSDART00000039498 GeneID:393256
KEGG:dre:393256 InParanoid:Q6P0T2 NextBio:20814317 Bgee:Q6P0T2
Uniprot:Q6P0T2
Length = 308
Score = 101 (40.6 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 49/180 (27%), Positives = 78/180 (43%)
Query: 104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEP--PI 159
SD+ L G V L YA + + A I + PVV PKS L G++ P
Sbjct: 93 SDVVITLVEMGFNVDTLPVYAKRSQRMVITAPPITNAPVV----PKS--LTAGQKRTHPA 146
Query: 160 EDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPS 219
IP+ P FPDP TY +P+ E SD + + Q+R +E ++ + E+ S
Sbjct: 147 H-IPSHFPDFPDPHTYIRTPTFREPVSDYQVVREKAASQRRDVERALTRFMAKTGET-QS 204
Query: 220 SFVHGDSSKEKKTVESNP--FLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDN 277
F S+ + +P +LSA L E E+ S+ ++ + N H++ +
Sbjct: 205 LFKDDISAFPLIAAKPSPIPYLSALLP-SELELQSLEETDSSEQDDQMDNDNNTSHIMQD 263
Score = 63 (27.2 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 14/66 (21%), Positives = 32/66 (48%)
Query: 32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
+V V+ + GF + +++ + L ++ YI VG+ A + R+ + D+ L
Sbjct: 40 QVVVSALLTECGFDSAEKAVVETLTEMMQSYITEVGRCAKANCEHTARSTPTLSDVVITL 99
Query: 92 EDLGLD 97
++G +
Sbjct: 100 VEMGFN 105
>UNIPROTKB|F1NMN6 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9031 "Gallus gallus" [GO:0001833 "inner cell mass cell
proliferation" evidence=IEA] [GO:0005669 "transcription factor
TFIID complex" evidence=IEA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0051457
"maintenance of protein location in nucleus" evidence=IEA]
GO:GO:0048471 GO:GO:0045893 GO:GO:0045598 GO:GO:0051457
GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
GeneTree:ENSGT00390000017567 InterPro:IPR019473 Pfam:PF10406
IPI:IPI00579339 EMBL:AADN02066913 EMBL:AADN02066914
Ensembl:ENSGALT00000005533 OMA:AIREKSA ArrayExpress:F1NMN6
Uniprot:F1NMN6
Length = 239
Score = 109 (43.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 39/138 (28%), Positives = 61/138 (44%)
Query: 104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
SDI L G V L YA + + A + + PV PK+ L G+ P
Sbjct: 23 SDIVVTLVEMGFNVETLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNKPHPS 76
Query: 162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
IP + P FPDP TY ++P+ E SD + + Q+R +E + L R +++G +
Sbjct: 77 HIPGYFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LTRFMAKTGETQ 133
Query: 221 FVHGDSSKEKKTVESNPF 238
+ D + + PF
Sbjct: 134 SLFKDDVSTFPLIAARPF 151
Score = 46 (21.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 63 INSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97
I+ +G++A Y + R + + DI L ++G +
Sbjct: 1 ISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFN 35
>FB|FBgn0022724 [details] [associations]
symbol:Taf8 "TBP-associated factor 8" species:7227
"Drosophila melanogaster" [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IDA] [GO:0009987
"cellular process" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0005669 "transcription factor TFIID complex" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] EMBL:AE014298
GO:GO:0045944 GO:GO:0006367 GO:GO:0005669 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 CTD:129685 eggNOG:NOG257256
GeneTree:ENSGT00390000017567 KO:K14649 OMA:TENLALH
InterPro:IPR019473 Pfam:PF10406 EMBL:Y15513 EMBL:AY071604
RefSeq:NP_523397.1 ProteinModelPortal:Q9VWY6 SMR:Q9VWY6
IntAct:Q9VWY6 MINT:MINT-863143 STRING:Q9VWY6 PaxDb:Q9VWY6
PRIDE:Q9VWY6 EnsemblMetazoa:FBtr0074514 GeneID:32792
KEGG:dme:Dmel_CG7128 FlyBase:FBgn0022724 InParanoid:Q9VWY6
OrthoDB:EOG4DZ0B5 PhylomeDB:Q9VWY6 GenomeRNAi:32792 NextBio:780406
Bgee:Q9VWY6 GermOnline:CG7128 Uniprot:Q9VWY6
Length = 328
Score = 98 (39.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/114 (25%), Positives = 54/114 (47%)
Query: 105 DINHCLASSGI-VRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIED-I 162
D++ L + GI + L Y + T VP IP P ++P S LQ G + P +
Sbjct: 74 DVSLALINMGISISNLDPYMRKETHVP----IPLPPQQTQQRPLS-LLQAGIKAPHPHYV 128
Query: 163 PAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSES 216
P++ P PDP Y +P+ + ++ + + Q+R +E ++ + +E+
Sbjct: 129 PSYFPPMPDPHAYIRTPTHKQPVTEYEAIREKAACQKRDIEKALTKFLCKTTET 182
Score = 63 (27.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/73 (27%), Positives = 34/73 (46%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
D + + + KV V+Q+ G +L L + I +G +A+ Y LSGR
Sbjct: 13 DPYRRILNKV-VSQLLLDKGAGQASNHSLETLTQMLQALIWEIGNSAHNYCELSGRTMPT 71
Query: 84 VFDIFQGLEDLGL 96
V D+ L ++G+
Sbjct: 72 VGDVSLALINMGI 84
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 361 346 0.00098 116 3 11 23 0.44 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 592 (63 KB)
Total size of DFA: 218 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.30u 0.14s 32.44t Elapsed: 00:00:02
Total cpu time: 32.31u 0.14s 32.45t Elapsed: 00:00:02
Start: Fri May 10 14:14:43 2013 End: Fri May 10 14:14:45 2013