BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018049
(361 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HZG4|TAF3_MOUSE Transcription initiation factor TFIID subunit 3 OS=Mus musculus
GN=Taf3 PE=1 SV=2
Length = 932
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 18/120 (15%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
+ +S+++ +V+VAQIC+ +G+ + Q SA L D+ RY+ +G+ + Y+ L GR +
Sbjct: 3 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62
Query: 84 VFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD 143
+ D+ + + +G++ + EL Y + V F + IP FPV K+
Sbjct: 63 LDDVGEAFQLMGVN------------------LHELEDYIHNIEPVTFPHQIPSFPVSKN 104
>sp|Q5F489|TAF3_CHICK Transcription initiation factor TFIID subunit 3 OS=Gallus gallus
GN=TAF3 PE=2 SV=1
Length = 930
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 18/120 (15%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
+ +S+ + +V+VAQIC+ +G+ + Q SA L D+ RY+ +G+ + Y L GR +
Sbjct: 3 ETYSRWLLRVSVAQICQALGWDSVQVSACDLLTDVLQRYLQGLGRGCHRYCELYGRTDPI 62
Query: 84 VFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD 143
+ D+ + +G++ + EL Y + V FA+ IP FPV K+
Sbjct: 63 LDDVGDAFKLMGVN------------------LHELEDYIHNIEPVTFAHQIPSFPVSKN 104
>sp|Q5VWG9|TAF3_HUMAN Transcription initiation factor TFIID subunit 3 OS=Homo sapiens
GN=TAF3 PE=1 SV=1
Length = 929
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 18/120 (15%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
+ +S+++ +V+VAQIC+ +G+ + Q SA L D+ RY+ +G+ + Y+ L GR +
Sbjct: 3 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62
Query: 84 VFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD 143
+ D+ + + +G+ + EL Y + V F + IP FPV K+
Sbjct: 63 LDDVGEAFQLMGVS------------------LHELEDYIHNIEPVTFPHQIPSFPVSKN 104
>sp|Q9EQH4|TAF8_MOUSE Transcription initiation factor TFIID subunit 8 OS=Mus musculus
GN=Taf8 PE=2 SV=1
Length = 308
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 107/243 (44%), Gaps = 31/243 (12%)
Query: 1 MSDGGGESGSKHQQPHTKRKFS-GDDFSQA---IAKVAVAQICERVGFQTFQQSALGKLA 56
M+D G +P +K+ + D++ A +V V+ + GF++ +++++ L
Sbjct: 1 MADTAAGPGGSGTRPGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLT 60
Query: 57 DIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIV 116
++ YI+ +G++A Y + R + + DI L ++G + ++ A +
Sbjct: 61 EMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFN--------VDTLPAYAKRS 112
Query: 117 RELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGE-EPPIEDIPAWLPAFPDPQTY 175
+ ++ A T+ P PK+ L G+ P IP+ P FPDP TY
Sbjct: 113 QRMVITAPPVTNQPVT-------------PKA--LTAGQNRPHPPHIPSHFPEFPDPHTY 157
Query: 176 FESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVES 235
++P+ E SD + + Q+R +E + L R +++G + + D + +
Sbjct: 158 IKTPTYREPVSDYQILREKAASQRRDVERA---LTRFMAKTGETQSLFKDDVSTFPLIAA 214
Query: 236 NPF 238
PF
Sbjct: 215 RPF 217
>sp|A7MAZ4|TAF8_BOVIN Transcription initiation factor TFIID subunit 8 OS=Bos taurus
GN=TAF8 PE=2 SV=1
Length = 310
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
+V V+ + GF++ +++++ L ++ YI+ +G++A Y + R + + DI L
Sbjct: 38 QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97
Query: 92 EDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFL 151
++G + ++ A + + ++ A T+ P PK+ L
Sbjct: 98 VEMGFN--------VDTLPAYAKRSQRMVITAPPVTNQPVT-------------PKA--L 134
Query: 152 QIGE-EPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQ 210
G+ P IP+ P FPDP TY ++P+ E SD + + Q+R +E + L
Sbjct: 135 TAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LT 191
Query: 211 RQFSESGPSSFVHGDSSKEKKTVESNPF 238
R +++G + + D + + PF
Sbjct: 192 RFMAKTGETQSLFKDDVSTFPLIAARPF 219
>sp|Q7Z7C8|TAF8_HUMAN Transcription initiation factor TFIID subunit 8 OS=Homo sapiens
GN=TAF8 PE=1 SV=1
Length = 310
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
+V V+ + GF++ +++++ L ++ YI+ +G++A Y + R + + DI L
Sbjct: 38 QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97
Query: 92 EDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFL 151
++G + ++ A + + ++ A T+ P PK+ L
Sbjct: 98 VEMGFN--------VDTLPAYAKRSQRMVITAPPVTNQPVT-------------PKA--L 134
Query: 152 QIGE---EPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVN 208
G+ PP IP+ P FPDP TY ++P+ E SD + + Q+R +E +
Sbjct: 135 TAGQNRPHPP--HIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA--- 189
Query: 209 LQRQFSESGPSSFVHGDSSKEKKTVESNPF 238
L R +++G + + D + + PF
Sbjct: 190 LTRFMAKTGETQSLFKDDVSTFPLIAARPF 219
>sp|Q7ZYA2|TAF8_XENLA Transcription initiation factor TFIID subunit 8 OS=Xenopus laevis
GN=taf8 PE=2 SV=1
Length = 293
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 26/211 (12%)
Query: 32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
+V V+ + GF + +++A+ L ++ Y++ +G++A Y + R + + DI L
Sbjct: 28 QVVVSSLLTEAGFDSAEKAAVESLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDIVVTL 87
Query: 92 EDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFL 151
++G + ++ A + + ++ A T+ P +P D KP +
Sbjct: 88 IEMGFN--------VDSLPAYAKRSQRMVITAPPVTNNP---VVPKALSAGDNKPHPAH- 135
Query: 152 QIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQR 211
IP+ P FPDP TY ++P+ E D + + Q+R +E + L R
Sbjct: 136 ----------IPSHFPEFPDPHTYIKTPTYREPVCDYQVLREKAASQRRDVERA---LTR 182
Query: 212 QFSESGPSSFVHGDSSKEKKTVESNPFLSAP 242
+++G + + D + + + P LS P
Sbjct: 183 FMAKTGETQSLFKDDTSTFPLIAARP-LSIP 212
>sp|Q28J24|TAF8_XENTR Transcription initiation factor TFIID subunit 8 OS=Xenopus
tropicalis GN=taf8 PE=2 SV=1
Length = 293
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
+V V+ + GF++ +++A+ L ++ Y++ +G++A Y + R + + DI L
Sbjct: 28 QVVVSSLLTEAGFESAEKAAVESLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDIVVTL 87
Query: 92 EDLGLDQGFSGASDINHCLASSGIVRELIQYANEATD-VPFAYAIPHFPVVKDRKPKSSF 150
++G + V L YA + V A + + PVV PK+
Sbjct: 88 IEMGFN------------------VESLPAYAKRSQRMVITAPPVTNNPVV----PKALS 125
Query: 151 LQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQ 210
++ P IP+ P FPDP TY ++P+ E D + + Q+R +E + L
Sbjct: 126 AGQNKQHPAH-IPSHFPEFPDPHTYIKTPTYREPVCDYQVLREKAASQRRDVERA---LT 181
Query: 211 RQFSESGPSSFVHGDSSKEKKTVESNPFLSAP 242
R +++G + + D + + + P LS P
Sbjct: 182 RFMAKTGETQSLFKDDTSTFPLIAARP-LSIP 212
>sp|Q6P0T2|TAF8_DANRE Transcription initiation factor TFIID subunit 8 OS=Danio rerio
GN=taf8 PE=1 SV=1
Length = 308
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 24/186 (12%)
Query: 32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
+V V+ + GF + +++ + L ++ YI VG+ A + R+ + D+ L
Sbjct: 40 QVVVSALLTECGFDSAEKAVVETLTEMMQSYITEVGRCAKANCEHTARSTPTLSDVVITL 99
Query: 92 EDLGLDQGFSGASDINHCLASSGIVRELIQYANEATD-VPFAYAIPHFPVVKDRKPKSSF 150
++G + V L YA + V A I + PVV PKS
Sbjct: 100 VEMGFN------------------VDTLPVYAKRSQRMVITAPPITNAPVV----PKSLT 137
Query: 151 LQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQ 210
P IP+ P FPDP TY +P+ E SD + + Q+R +E ++
Sbjct: 138 AGQKRTHPAH-IPSHFPDFPDPHTYIRTPTFREPVSDYQVVREKAASQRRDVERALTRFM 196
Query: 211 RQFSES 216
+ E+
Sbjct: 197 AKTGET 202
>sp|Q9VWY6|TAF8_DROME Transcription initiation factor TFIID subunit 8 OS=Drosophila
melanogaster GN=Taf8 PE=1 SV=1
Length = 328
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 25/195 (12%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
D + + + KV V+Q+ G +L L + I +G +A+ Y LSGR
Sbjct: 13 DPYRRILNKV-VSQLLLDKGAGQASNHSLETLTQMLQALIWEIGNSAHNYCELSGRTMPT 71
Query: 84 VFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD 143
V D+ L ++G+ + L Y + T VP IP P
Sbjct: 72 VGDVSLALINMGIS------------------ISNLDPYMRKETHVP----IPLPPQQTQ 109
Query: 144 RKPKSSFLQIG-EEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKM 202
++P S LQ G + P +P++ P PDP Y +P+ + ++ + + Q+R +
Sbjct: 110 QRPLS-LLQAGIKAPHPHYVPSYFPPMPDPHAYIRTPTHKQPVTEYEAIREKAACQKRDI 168
Query: 203 EMSMVNLQRQFSESG 217
E ++ + +E+
Sbjct: 169 EKALTKFLCKTTETN 183
>sp|Q5ZMS1|TAF8_CHICK Transcription initiation factor TFIID subunit 8 OS=Gallus gallus
GN=TAF8 PE=2 SV=1
Length = 244
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 27/178 (15%)
Query: 62 YINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQ 121
YI+ +G++A Y + R + + DI L ++G + + A + + ++
Sbjct: 5 YISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFN--------VETLPAYAKRSQRMVI 56
Query: 122 YANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGE-EPPIEDIPAWLPAFPDPQTYFESPS 180
A T+ P PK+ L G+ +P IP + P FPDP TY ++P+
Sbjct: 57 TAPPVTNQPVT-------------PKA--LTAGQNKPHPSHIPGYFPEFPDPHTYIKTPT 101
Query: 181 QNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPF 238
E SD + + Q+R +E + L R +++G + + D + + PF
Sbjct: 102 YREPVSDYQVLREKAASQRRDVERA---LTRFMAKTGETQSLFKDDVSTFPLIAARPF 156
>sp|Q03750|TAF8_YEAST Transcription initiation factor TFIID subunit 8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF8 PE=1
SV=1
Length = 510
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 158 PIE-DIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSES 216
P+E IP+WLP FP TY +P N +D T K E+ K+ ++ E +++NL + S
Sbjct: 170 PLEKQIPSWLPNFPPDHTYKFTPEFNHPITDLKTIKKEIVKESQESEKALLNLNKSLSHI 229
Query: 217 GPSS 220
+S
Sbjct: 230 SSAS 233
>sp|B9DUW7|RLMN_STRU0 Probable dual-specificity RNA methyltransferase RlmN
OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J)
GN=rlmN PE=3 SV=1
Length = 361
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 83 NVFDIFQGLEDLGLDQGFS-GASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVV 141
N ++ + L + D G + GA I +++SG+ ++ ++ANE V A ++ H P
Sbjct: 168 NYDNVMKFLRTINDDNGLAIGARHIT--VSTSGLAHKIREFANEGVQVNLAVSL-HAP-- 222
Query: 142 KDRKPKSSFLQIGEEPPIEDIPAWLPAF---PDPQTYFESPSQNERASDSYTEKIELGKQ 198
+ + +SS ++I P+E + A + + + + FE NE +D + EL
Sbjct: 223 -NNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNE-VNDGVEQAQELADL 280
Query: 199 QRKM-EMSMVNL 209
+K+ ++S VNL
Sbjct: 281 TKKIRKLSYVNL 292
>sp|Q9P6P0|TAF3_SCHPO Transcription initiation factor TFIID subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf3 PE=3 SV=1
Length = 155
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
D+ ++ ++ +Q G + S L DI +RYI + + A A + R+ +
Sbjct: 7 DELYFSLMRIFCSQTLRAAGIDRTKVSLLNSFTDITIRYIRLLSETAMAKAEVGRRSCCD 66
Query: 84 VFDIFQGLEDLGLDQG 99
+ D+ +E++GL G
Sbjct: 67 LGDLRLAMEEIGLLNG 82
>sp|Q8SQP4|H4_ENCCU Histone H4 OS=Encephalitozoon cuniculi (strain GB-M1) GN=HHF1
PE=3 SV=1
Length = 103
Score = 34.3 bits (77), Expect = 1.7, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 37/92 (40%)
Query: 5 GGESGSKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYIN 64
G + SK + KR S +I+K A+ +I R G + ++ + A YI
Sbjct: 7 GAKGKSKAAKGIAKRHRKQSSLSDSISKPAIRRIARRAGVRRVGGGCFKEINNAAREYIR 66
Query: 65 SVGKAANFYANLSGRAEGNVFDIFQGLEDLGL 96
A YA + R DI L+ +G+
Sbjct: 67 DTLSIACIYATHAKRKTITCSDILHSLKRMGI 98
>sp|Q5HAW8|PURA_EHRRW Adenylosuccinate synthetase OS=Ehrlichia ruminantium (strain
Welgevonden) GN=purA PE=3 SV=1
Length = 430
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 113 SGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDP 172
SG+V + ++ +++ + V+ D P SS++Q EP E +P W
Sbjct: 325 SGLVLTKLDVLDQFSEIKICTQYKYDGVIYDYIPASSYVQNNLEPIYETVPGWKENTFGS 384
Query: 173 QTYFESPSQNERASDSYTEKIE 194
TY + P + + SY +KIE
Sbjct: 385 VTYEDLP----KNAISYIKKIE 402
>sp|Q5FFQ3|PURA_EHRRG Adenylosuccinate synthetase OS=Ehrlichia ruminantium (strain
Gardel) GN=purA PE=3 SV=1
Length = 430
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 113 SGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDP 172
SG+V + ++ +++ + V+ D P SS++Q EP E +P W
Sbjct: 325 SGLVLTKLDVLDQFSEIKICTQYKYDGVIYDYIPASSYVQNNLEPIYETVPGWKENTFGS 384
Query: 173 QTYFESPSQNERASDSYTEKIE 194
TY + P + + SY +KIE
Sbjct: 385 VTYEDLP----KNAISYIKKIE 402
>sp|Q61282|PGCA_MOUSE Aggrecan core protein OS=Mus musculus GN=Acan PE=1 SV=2
Length = 2132
Score = 33.9 bits (76), Expect = 2.2, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 125 EATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNER 184
+ T+VP+ P K + + ++ +G P P WLP P + + ESPS +E
Sbjct: 726 KTTEVPYFTTEPR----KQTEWEPAYTPVGTSPQPGIPPTWLPTLPAAEEHTESPSASEE 781
Query: 185 ASDS 188
S S
Sbjct: 782 PSAS 785
>sp|O94706|TAF8_SCHPO Transcription initiation factor TFIID subunit 8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf8 PE=3 SV=1
Length = 222
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 15/174 (8%)
Query: 35 VAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94
+A I +++GF + ++A + +Y+ + + + LS D+ L L
Sbjct: 5 IANILQQLGFDSMTKAAEASFVEAVDKYLRNSFRELALHTQLSKHTIPTTKDVALWLNLL 64
Query: 95 GLDQGFSGASDINHCL--ASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQ 152
+ S +++ L I EL + ANE+ D+P F D K S L
Sbjct: 65 NIPMS-SLQTELEKYLKPLPPAINDELDRLANESQDIP-----SKFKSSLDSKMVSQLL- 117
Query: 153 IGEEPPIEDIPAW----LPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKM 202
G ++ PA+ LP FP TY +P R + S + EL Q+ ++
Sbjct: 118 -GSLAVSQNRPAYVVNHLPPFPASHTYMATPVYPVRPT-SPKQIRELATQESRL 169
>sp|P87152|SPT7_SCHPO Transcriptional activator spt7 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spt7 PE=1 SV=2
Length = 992
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 26 FSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVF 85
+ + K I GF++FQ AL L +IA Y+ +G + Y + G+ +
Sbjct: 709 LAHDVLKKLCTIILFHAGFESFQMGALDALTEIAADYMAKMGAVMDQYL-IYGKDKSQQE 767
Query: 86 DIFQGLEDLGLD 97
+ Q L +LG+D
Sbjct: 768 IVGQTLGELGVD 779
>sp|P07897|PGCA_RAT Aggrecan core protein OS=Rattus norvegicus GN=Acan PE=1 SV=2
Length = 2124
Score = 33.1 bits (74), Expect = 3.4, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 125 EATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNER 184
E T+VP+ P K + + ++ +G P P WLP P + + ESPS ++
Sbjct: 722 ETTEVPYFTTEPE----KQTEWEPAYTPVGTSPLPGIPPTWLPTVPAAEEHTESPSASQE 777
Query: 185 ASDS 188
S S
Sbjct: 778 PSAS 781
>sp|A4VHM4|RPOC_PSEU5 DNA-directed RNA polymerase subunit beta' OS=Pseudomonas stutzeri
(strain A1501) GN=rpoC PE=3 SV=1
Length = 1399
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 181 QNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPFLS 240
Q + +D + E I L + RK+E++ ESG SSF+ GD + + +E N LS
Sbjct: 1244 QGVKINDKHIETI-LRQMLRKVEIT---------ESGDSSFIKGDQMELTQVLEENERLS 1293
Query: 241 APLHFEEKEVSSV--VLPAKLSKE 262
A F K V + + A LS E
Sbjct: 1294 AEDKFVAKYVRVLLGITKASLSTE 1317
>sp|Q88WZ5|MURC_LACPL UDP-N-acetylmuramate--L-alanine ligase OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=murC PE=3
SV=1
Length = 436
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 188 SYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPFLSAPLHFEE 247
SY EK+ L + +R++ + ++R+FSE V D + +A + +
Sbjct: 278 SYFEKVNLDEIRREL-LDFSGVKRRFSEHQVGDMVMIDDYAHHPSEIKATLDAARQKYPD 336
Query: 248 KEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALE 290
KE+ +V P S+ AL + A +H+ + F+ A E
Sbjct: 337 KEILAVFQPHTFSRTKALMDGFAASLSKADHVFLTNIFSSARE 379
>sp|O31489|YDCI_BACSU Uncharacterized protein YdcI OS=Bacillus subtilis (strain 168)
GN=ydcI PE=4 SV=2
Length = 719
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 130 PFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWL 166
P A +PH + +R K L++ EPP + I A+L
Sbjct: 217 PIAKVVPHRVLAMNRGEKEDILKVAIEPPADHIKAYL 253
>sp|Q9FKD0|MT797_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37970
OS=Arabidopsis thaliana GN=At5g37970 PE=1 SV=1
Length = 362
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 21/102 (20%)
Query: 166 LPAFPD---------PQTYFESPSQN--------ERASDSYTEKIELGKQQRKMEMSMVN 208
+P FP P +Y + S ER S++ EK++L R E +++
Sbjct: 1 MPTFPQSFPMNGGDGPHSYIHNSSYQKVAIDGVKERTSEAILEKLDLEFLNRNSEENILR 60
Query: 209 LQRQFSESGPSSF--VHG--DSSKEKKTVESNPFLSAPLHFE 246
+ GP++F V D+ K+K+ E+ ++ APL F+
Sbjct: 61 IVDFGCSIGPNTFDVVQNIIDTVKQKRLKENKTYIGAPLEFQ 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,884,737
Number of Sequences: 539616
Number of extensions: 5722165
Number of successful extensions: 11669
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 11635
Number of HSP's gapped (non-prelim): 50
length of query: 361
length of database: 191,569,459
effective HSP length: 119
effective length of query: 242
effective length of database: 127,355,155
effective search space: 30819947510
effective search space used: 30819947510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)