Query 018050
Match_columns 361
No_of_seqs 269 out of 2415
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 09:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.7 5.5E-18 1.9E-22 161.2 9.6 157 128-307 94-283 (367)
2 2lnd_A De novo designed protei 50.0 17 0.00058 26.6 3.7 67 247-336 38-104 (112)
3 2ltm_A NFU1 iron-sulfur cluste 16.6 44 0.0015 25.8 0.0 48 213-260 53-100 (107)
4 1gvn_A Epsilon; postsegregatio 10.9 1.5E+02 0.0053 21.8 2.4 42 317-358 36-77 (90)
5 2bep_A Ubiquitin-conjugating e 9.4 3E+02 0.01 22.1 4.1 45 289-333 68-123 (159)
6 2ayv_A Ubiquitin-conjugating e 9.3 2.9E+02 0.0099 22.5 4.0 45 289-333 78-132 (166)
7 4gpr_A Ubiquitin-conjugating e 9.3 2.9E+02 0.01 22.0 4.0 45 289-333 61-115 (151)
8 1zdn_A Ubiquitin-conjugating e 8.9 3.1E+02 0.011 22.0 4.0 45 289-333 70-124 (158)
9 3k9o_A Ubiquitin-conjugating e 8.5 2.3E+02 0.0078 23.9 3.1 29 319-347 138-166 (201)
10 3h16_A TIR protein; bacteria T 8.5 6E+02 0.021 19.9 5.7 81 250-331 64-152 (154)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.73 E-value=5.5e-18 Score=161.20 Aligned_cols=157 Identities=19% Similarity=0.192 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHhhcceEEEEEeeeecchhhhhhhhhccCCcccccccccCCCCCCCEEEEeCCCChhhHHHHhhhc--
Q 018050 128 VVVTGRFLSRVMLFVLGFYWITETFRILDVQEKSENEAKNQSKDEDEAKDQDEESGRPGAIISNHVSYLDILYHMSSS-- 205 (361)
Q Consensus 128 ~~~~~r~l~r~ll~~~G~~~I~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~IiVsNH~S~lD~l~l~~~~-- 205 (361)
+..+.+.|.|.++...|.. +.|..... ++ .+..+.++++|++|||+|.+|++++...+
T Consensus 94 ~y~~~~~~ir~li~~~~s~---V~G~e~~~--------~~---------~E~l~~~~~vIfisNHQS~~D~~vi~~~l~~ 153 (367)
T 1iuq_A 94 YYIFGQNYIRPLIDFGNSF---VGNLSLFK--------DI---------EEKLQQGHNVVLISNHQTEADPAIISLLLEK 153 (367)
T ss_dssp HHHHHHHHHGGGBCGGGCE---EECHHHHH--------HH---------HHHHHTTCEEEEEECCCCTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCCE---eecchhhh--------hH---------HhhccCCCcEEEEECCccchhHHHHHHHHhh
Confidence 3346677777777766663 55543320 00 11124678999999999999999988776
Q ss_pred -------cceeeehhhhhhhcHHHHHH--HhcCceEEecCCC------CccccchHHHHHHHHHHHHhCCCCCeEEEecC
Q 018050 206 -------FPSFVAKRSVAKLPLVGLIS--KCLGCVYVQRESK------SSDFKGVSGVVTERVREAHRDKSAPMMMLFPE 270 (361)
Q Consensus 206 -------~~~fvak~~~~~~p~~g~~~--~~~g~i~V~R~~~------~~~~~~~~~~~~~~l~~~~~~~~g~~lvIFPE 270 (361)
+..||||+++.+.|+...+. +.++||+..+.-. .+..+.-. ...+.+.+.++.+ |..++||||
T Consensus 154 ~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI~~kk~id~~p~l~r~~~r~n~-ksl~~~~~~Lk~G-G~sI~IFPE 231 (367)
T 1iuq_A 154 TNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANT-RSLKEMALLLRGG-SQLIWIAPS 231 (367)
T ss_dssp TCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHH-HHHHHHHHHHHHC-CCEEEECTT
T ss_pred cccccccceEEEeehhhhcCccccchhhhhheeeEEecccCCCcchhhhhhhHHHH-HHHHHHHHHHHcC-CeEEEEeCC
Confidence 35999999999777664331 4456777633221 00001111 1112222223322 569999999
Q ss_pred ceecCC----CC--ccccccccc----c----CCCc--EEEEEEEcCCCCcCC
Q 018050 271 GTTTNG----DY--LLPFKTGAF----L----ARAP--VLPVILRYPYQRFSP 307 (361)
Q Consensus 271 GT~sn~----~~--ll~Fk~Gaf----~----~~~p--VvPv~i~y~~~~~~~ 307 (361)
|||+.+ +. ..+||+|+| . +++| |+||+|. ++..+.|
T Consensus 232 GTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~-t~~impp 283 (367)
T 1iuq_A 232 GGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL-CHDIMPP 283 (367)
T ss_dssp CSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE-CGGGSCC
T ss_pred CCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEE-eccccCC
Confidence 999995 44 446999998 3 8999 9999999 7776755
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=50.04 E-value=17 Score=26.61 Aligned_cols=67 Identities=13% Similarity=0.258 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCceecCCCCccccccccccCCCcEEEEEEEcCCCCcCCcccccCCCCCCCHHHHHHH
Q 018050 247 GVVTERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFLARAPVLPVILRYPYQRFSPAWDSISGQEKDDPKLYAEN 326 (361)
Q Consensus 247 ~~~~~~l~~~~~~~~g~~lvIFPEGT~sn~~~ll~Fk~Gaf~~~~pVvPv~i~y~~~~~~~~~~~~~~~~~~~~~~~a~~ 326 (361)
+.+.+.++.... +|.|+++|-.|...|+ +-+|..-+-..++..-. ....||++++++
T Consensus 38 qdirdiiksmkd--ngkplvvfvngasqnd--vnefqneakkegvsydv-------------------lkstdpeeltqr 94 (112)
T 2lnd_A 38 QDIRDIIKSMKD--NGKPLVVFVNGASQND--VNEFQNEAKKEGVSYDV-------------------LKSTDPEELTQR 94 (112)
T ss_dssp HHHHHHHHHHTT--CCSCEEEEECSCCHHH--HHHHHHHHHHHTCEEEE-------------------EECCCHHHHHHH
T ss_pred hhHHHHHHHHHh--cCCeEEEEecCccccc--HHHHHHHHHhcCcchhh-------------------hccCCHHHHHHH
Confidence 355555655443 3569999999977664 44666655544443211 134679999999
Q ss_pred HHHHHHHHhh
Q 018050 327 VRRLMASERN 336 (361)
Q Consensus 327 Vr~~ma~~l~ 336 (361)
||+.+..+..
T Consensus 95 vreflktags 104 (112)
T 2lnd_A 95 VREFLKTAGS 104 (112)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccc
Confidence 9998887653
No 3
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=16.63 E-value=44 Score=25.77 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=35.5
Q ss_pred hhhhhhcHHHHHHHhcCceEEecCCCCccccchHHHHHHHHHHHHhCC
Q 018050 213 RSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVTERVREAHRDK 260 (361)
Q Consensus 213 ~~~~~~p~~g~~~~~~g~i~V~R~~~~~~~~~~~~~~~~~l~~~~~~~ 260 (361)
..++.+|.+..++-....|.|.|.....++..+...+.+.|.+++..+
T Consensus 53 ~~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~ikp~V~~~I~~~~~sG 100 (107)
T 2ltm_A 53 RQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIMDFFASG 100 (107)
Confidence 456678888888888889999984444567777777878888777654
No 4
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=10.86 E-value=1.5e+02 Score=21.78 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHcccC
Q 018050 317 KDDPKLYAENVRRLMASERNLILSDIGLAEKRIYHAALNGLL 358 (361)
Q Consensus 317 ~~~~~~~a~~Vr~~ma~~l~~~~~~~~~~dk~~y~~~~~~~~ 358 (361)
+.|...|.-+.-..+..+..+.+-++..+|-..++.||+.++
T Consensus 36 k~ds~~l~vnLLnQL~~a~~VnLF~~sl~eL~~v~~YW~~Mn 77 (90)
T 1gvn_A 36 KNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMN 77 (90)
T ss_dssp TTCTTSHHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHH
Confidence 445556666667777888888999999999999999998753
No 5
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=9.43 E-value=3e+02 Score=22.15 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCCcEEEEEEEcCCCCcCCcccccCC-----------CCCCCHHHHHHHHHHHHHH
Q 018050 289 ARAPVLPVILRYPYQRFSPAWDSISG-----------QEKDDPKLYAENVRRLMAS 333 (361)
Q Consensus 289 ~~~pVvPv~i~y~~~~~~~~~~~~~~-----------~~~~~~~~~a~~Vr~~ma~ 333 (361)
.+.|..|=.++...+.|+|..+...| .+..+.+.+...++..|.+
T Consensus 68 ~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 123 (159)
T 2bep_A 68 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAA 123 (159)
T ss_dssp TTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhC
Confidence 55666665566555566554332111 3345566666777777765
No 6
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=9.31 E-value=2.9e+02 Score=22.53 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=25.1
Q ss_pred CCCcEEEEEEEcCCCCcCCcccc--------cC--CCCCCCHHHHHHHHHHHHHH
Q 018050 289 ARAPVLPVILRYPYQRFSPAWDS--------IS--GQEKDDPKLYAENVRRLMAS 333 (361)
Q Consensus 289 ~~~pVvPv~i~y~~~~~~~~~~~--------~~--~~~~~~~~~~a~~Vr~~ma~ 333 (361)
.+.|..|=.++...+.|.|.... +. ..+..+.+.+...|+..|.+
T Consensus 78 ~~YP~~PP~V~F~T~i~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~ 132 (166)
T 2ayv_A 78 SDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTD 132 (166)
T ss_dssp TTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CcCCCCCceeeeccCCcCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhC
Confidence 55666665666555555544321 10 13345667777777777765
No 7
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=9.28 E-value=2.9e+02 Score=21.98 Aligned_cols=45 Identities=7% Similarity=0.038 Sum_probs=25.5
Q ss_pred CCCcEEEEEEEcCCCCcCCcccccC----------CCCCCCHHHHHHHHHHHHHH
Q 018050 289 ARAPVLPVILRYPYQRFSPAWDSIS----------GQEKDDPKLYAENVRRLMAS 333 (361)
Q Consensus 289 ~~~pVvPv~i~y~~~~~~~~~~~~~----------~~~~~~~~~~a~~Vr~~ma~ 333 (361)
.+.|..|=.++...+.|+|....-+ ..+..+.+.+...|+..|.+
T Consensus 61 ~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 115 (151)
T 4gpr_A 61 VDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTD 115 (151)
T ss_dssp TTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHC
T ss_pred CCCCCCcceeEEecCcccceECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcC
Confidence 4556666566665566655432210 13345677777777777765
No 8
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=8.88 E-value=3.1e+02 Score=22.04 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=25.3
Q ss_pred CCCcEEEEEEEcCCCCcCCcccccC----------CCCCCCHHHHHHHHHHHHHH
Q 018050 289 ARAPVLPVILRYPYQRFSPAWDSIS----------GQEKDDPKLYAENVRRLMAS 333 (361)
Q Consensus 289 ~~~pVvPv~i~y~~~~~~~~~~~~~----------~~~~~~~~~~a~~Vr~~ma~ 333 (361)
.+.|..|=.++...+.|+|....-. ..+..+.+.+...++..|.+
T Consensus 70 ~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~ 124 (158)
T 1zdn_A 70 KDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIH 124 (158)
T ss_dssp TTTTTSCCEEEESSCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCEEEeccCcccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhC
Confidence 5566666666665566665432210 13345666667777777654
No 9
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=8.52 E-value=2.3e+02 Score=23.90 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHhhhhhcccchHHH
Q 018050 319 DPKLYAENVRRLMASERNLILSDIGLAEK 347 (361)
Q Consensus 319 ~~~~~a~~Vr~~ma~~l~~~~~~~~~~dk 347 (361)
+.++|.+++|+...+..+.+..+-.+++|
T Consensus 138 ~~~~f~~~a~~~~~~~a~~~~~~~~~eek 166 (201)
T 3k9o_A 138 NPEMFKQTARLWAHVYAGAPVSSPEYTKK 166 (201)
T ss_dssp CHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccccchhHHH
Confidence 45667777776655544433333333333
No 10
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=8.51 E-value=6e+02 Score=19.87 Aligned_cols=81 Identities=7% Similarity=0.051 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCCCeEEEecCceecCCCCccccccccc---cCCCcEEEEEEEcCCCC---cCCcccccCC--CCCCCHH
Q 018050 250 TERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAF---LARAPVLPVILRYPYQR---FSPAWDSISG--QEKDDPK 321 (361)
Q Consensus 250 ~~~l~~~~~~~~g~~lvIFPEGT~sn~~~ll~Fk~Gaf---~~~~pVvPv~i~y~~~~---~~~~~~~~~~--~~~~~~~ 321 (361)
.+.+.+.++... ..|+|+=+......-++.++....- ..+..|+||...-+..- .++....... ....+.+
T Consensus 64 ~~~i~~ai~~s~-~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~ 142 (154)
T 3h16_A 64 RRSIDKGLGSSR-FGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKSVD 142 (154)
T ss_dssp HHHHHHHHTSEE-EEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTTSCHH
T ss_pred HHHHHHHHHhCc-EEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCcccHH
Confidence 345556565543 4677777766655554444433321 24568999987543221 1111111111 3466788
Q ss_pred HHHHHHHHHH
Q 018050 322 LYAENVRRLM 331 (361)
Q Consensus 322 ~~a~~Vr~~m 331 (361)
++++.+.+.+
T Consensus 143 ~ia~~l~~lv 152 (154)
T 3h16_A 143 EIVADLMAII 152 (154)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888776
Done!