Query 018051
Match_columns 361
No_of_seqs 175 out of 1502
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 09:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jdm_A Sarcolipin; helix, memb 16.6 40 0.0014 19.6 0.6 20 1-20 1-20 (31)
2 4faj_A PRGZ; substrate binding 16.3 30 0.001 31.6 0.0 32 10-41 24-56 (564)
3 2lat_A Dolichyl-diphosphooligo 12.1 2.1E+02 0.0071 17.6 3.0 18 343-360 8-25 (37)
4 3j1r_A Archaeal adhesion filam 10.7 2.6E+02 0.0088 15.7 3.0 17 303-319 8-24 (26)
5 1fjk_A Cardiac phospholamban; 10.5 1.4E+02 0.0049 19.1 1.9 14 7-20 30-43 (52)
6 2ks1_B Epidermal growth factor 9.9 3.2E+02 0.011 17.3 3.5 20 52-71 18-37 (44)
7 2l9u_A Receptor tyrosine-prote 8.8 2.5E+02 0.0084 17.0 2.4 12 307-318 19-30 (40)
8 2k21_A Potassium voltage-gated 8.6 4.6E+02 0.016 20.8 4.5 31 120-150 49-79 (138)
9 1rkl_A Dolichyl-diphosphooligo 8.5 2.2E+02 0.0076 17.4 2.1 17 344-360 9-25 (36)
10 2jyp_A Aragonite protein AP7; 6.4 2.1E+02 0.0071 16.8 1.2 15 26-40 11-29 (36)
No 1
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=16.62 E-value=40 Score=19.59 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=11.2
Q ss_pred ChhhhhHHHHHHHHHHHHhh
Q 018051 1 MARKTMFLFIFFCFLLILLP 20 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (361)
|.|.|-=||+=||..||.++
T Consensus 1 m~~n~qELf~NFt~vLI~vl 20 (31)
T 1jdm_A 1 MGINTRELFLNFTIVLITVI 20 (31)
T ss_dssp CCSCSSSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHH
Confidence 44555556666666655444
No 2
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=16.29 E-value=30 Score=31.58 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccccccc-ccCCccccCCcCCc
Q 018051 10 IFFCFLLILLPLSASAEC-KCDLTETIGGSGHK 41 (361)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 41 (361)
-=||||-|-|.|-++.+| ++..+..|||.-++
T Consensus 24 kkfcflgigllplvlascgtntatkdsqdatek 56 (564)
T 4faj_A 24 KKFCFLGIGLLPLVLASCGTNTATKDSQDATEK 56 (564)
T ss_dssp ---------------------------------
T ss_pred hhheeecccHHHHHHHhcCCCcccccchhhHHH
Confidence 358999999999999987 44344445554433
No 3
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=12.09 E-value=2.1e+02 Score=17.63 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 018051 343 ANFSLLLGSGCMSLLAKW 360 (361)
Q Consensus 343 ~~~~~~lG~~lMa~l~~w 360 (361)
..++.++|.+.|.++-.|
T Consensus 8 ~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457889999999887654
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=10.69 E-value=2.6e+02 Score=15.68 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018051 303 IEGIFNSASAGILIYMA 319 (361)
Q Consensus 303 ~~gil~alaaGtflYIa 319 (361)
+.-|+.+++++.++|.=
T Consensus 8 ~lLIviav~aaVllylW 24 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44567889999999963
No 5
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=10.54 E-value=1.4e+02 Score=19.15 Aligned_cols=14 Identities=57% Similarity=1.042 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhh
Q 018051 7 FLFIFFCFLLILLP 20 (361)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (361)
=+|+=||..||.|.
T Consensus 30 elfvnfclilicll 43 (52)
T 1fjk_A 30 NLFINFCLILIFLL 43 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36666776666543
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.86 E-value=3.2e+02 Score=17.33 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhHhhhccc
Q 018051 52 ILSILIAGAFGVSIPSFGKN 71 (361)
Q Consensus 52 i~~i~~~sllg~~lPl~~~~ 71 (361)
+..+++..++....-++.++
T Consensus 18 VgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 18 VGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 33344433444433444443
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.81 E-value=2.5e+02 Score=17.00 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 018051 307 FNSASAGILIYM 318 (361)
Q Consensus 307 l~alaaGtflYI 318 (361)
..-+-+|||+|-
T Consensus 19 if~~lg~tflyw 30 (40)
T 2l9u_A 19 IFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhCceeEEE
Confidence 344567888884
No 8
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=8.57 E-value=4.6e+02 Score=20.82 Aligned_cols=31 Identities=0% Similarity=-0.077 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018051 120 QDFPFTGFVAMVSAILTMMVDAFATSFYQRL 150 (361)
Q Consensus 120 ~~~p~~~~~~~~Gf~l~~llE~~~~~~~~~~ 150 (361)
+++.+.++++++||+-++++--++.....++
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 3444566788889998888876665544443
No 9
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=8.49 E-value=2.2e+02 Score=17.38 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 018051 344 NFSLLLGSGCMSLLAKW 360 (361)
Q Consensus 344 ~~~~~lG~~lMa~l~~w 360 (361)
.++.++|.+.|.++-.|
T Consensus 9 ~lan~lG~~~~~LIvlY 25 (36)
T 1rkl_A 9 SLAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788999999887654
No 10
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=6.42 E-value=2.1e+02 Score=16.76 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=0.0
Q ss_pred cc-ccC---CccccCCcCC
Q 018051 26 EC-KCD---LTETIGGSGH 40 (361)
Q Consensus 26 ~~-~~~---~~~~~~~~~~ 40 (361)
|| -|+ .|++-|.|-|
T Consensus 11 ecalcysitdpgerqrcid 29 (36)
T 2jyp_A 11 ECALCYSITDPGERQRCID 29 (36)
T ss_dssp CCSSSTTTTTTTCTTCGGG
T ss_pred hheeEEeecCcchhhhhhh
Done!