Query 018051
Match_columns 361
No_of_seqs 175 out of 1502
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 09:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018051.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018051hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 11.3 81 0.0059 24.4 3.3 29 83-111 114-142 (173)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 9.5 1.1E+02 0.0079 17.1 2.4 23 5-27 12-34 (36)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 6.7 3.5E+02 0.026 18.0 5.7 19 339-357 67-85 (103)
4 d1v54l_ f.23.6.1 (L:) Mitochon 6.3 1.7E+02 0.012 17.3 2.4 23 46-70 17-39 (46)
5 d2bs2c1 f.21.2.1 (C:1-254) Fum 5.0 4.7E+02 0.034 20.8 5.6 63 79-141 23-94 (254)
6 d1kqfb2 f.23.22.1 (B:246-290) 4.2 3.8E+02 0.028 15.6 3.0 18 303-320 17-34 (45)
7 d1jb0j_ f.23.18.1 (J:) Subunit 3.7 4.1E+02 0.03 15.0 2.9 19 299-317 10-28 (41)
8 d1rkla_ f.23.30.1 (A:) Oligosa 3.4 3.9E+02 0.029 14.4 2.4 16 345-360 10-25 (36)
9 d2e74f1 f.23.25.1 (F:1-32) Pet 3.4 3.8E+02 0.028 14.0 3.1 19 341-359 10-28 (32)
10 d2axth1 f.23.33.1 (H:2-65) Pho 3.4 3.1E+02 0.023 17.2 2.2 13 7-19 33-45 (64)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=11.27 E-value=81 Score=24.40 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=19.3
Q ss_pred HHHHHhhhhhHHhhhHHhccHhhHHhccC
Q 018051 83 FIIKAFAAGVILATGFVHILPDAYESLTS 111 (361)
Q Consensus 83 ~~l~~fa~GVlLa~aflhLLPea~e~~~~ 111 (361)
....+.-..+++|+.+=-++|-..+.++.
T Consensus 114 vi~~sl~~~~~ia~~~G~~lPlll~klg~ 142 (173)
T d2yvxa3 114 VVGVSLVLIVFFANLVGAMLPFLLRRLGV 142 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455556677777777777877777764
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.47 E-value=1.1e+02 Score=17.11 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHhhccccccc
Q 018051 5 TMFLFIFFCFLLILLPLSASAEC 27 (361)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (361)
.+|..+=-.||+|+-+-|++++.
T Consensus 12 ~LFilvPt~FLliLyvqT~s~~~ 34 (36)
T d2axtm1 12 ALFVLVPSVFLIILYVQTESQQK 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHhheeeccccc
Confidence 35666667899999998888754
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.67 E-value=3.5e+02 Score=17.95 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018051 339 LQLGANFSLLLGSGCMSLL 357 (361)
Q Consensus 339 ~~~~~~~~~~lG~~lMa~l 357 (361)
-|+...+.++.|..+++.+
T Consensus 67 gr~~~~~~~~~Gi~~~~~~ 85 (103)
T d1r3jc_ 67 GRCVAVVVMVAGITSFGLV 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776543
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.33 E-value=1.7e+02 Score=17.30 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHhhhcc
Q 018051 46 KLKIVAILSILIAGAFGVSIPSFGK 70 (361)
Q Consensus 46 ~~ki~~i~~i~~~sllg~~lPl~~~ 70 (361)
.+|+.++++++++|-++. |+++.
T Consensus 17 k~rLla~m~~~fGsgfa~--PF~iv 39 (46)
T d1v54l_ 17 KWRLLAMMTLFFGSGFAA--PFFIV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHhccccc--hHHHH
Confidence 477888888888876654 87543
No 5
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=5.05 E-value=4.7e+02 Score=20.79 Aligned_cols=63 Identities=6% Similarity=-0.169 Sum_probs=34.4
Q ss_pred chHHHHHHHhhhhhHHhhhHHhcc--------HhhHHhccCCCCC-CCCCCCCcHHHHHHHHHHHHHHHHHH
Q 018051 79 NNIFFIIKAFAAGVILATGFVHIL--------PDAYESLTSPCLS-PKPWQDFPFTGFVAMVSAILTMMVDA 141 (361)
Q Consensus 79 ~~~l~~l~~fa~GVlLa~aflhLL--------Pea~e~~~~~~~~-~~~~~~~p~~~~~~~~Gf~l~~llE~ 141 (361)
+-.+..+.+.+|=++..-.+.||+ ||+++...+.... .......|+...+..++++..+++--
T Consensus 23 ~~~l~~l~slTGlvL~lFl~~Hm~~n~~il~g~eafn~~a~~l~~~~~~~~~~p~l~~i~~~~l~~~ll~H~ 94 (254)
T d2bs2c1 23 PAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHA 94 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHHHHHHHH
Confidence 335677777776666666777876 6776665432111 11112346655555555555555543
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.16 E-value=3.8e+02 Score=15.62 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018051 303 IEGIFNSASAGILIYMAL 320 (361)
Q Consensus 303 ~~gil~alaaGtflYIa~ 320 (361)
+.++..++++|.|=||+.
T Consensus 17 ~~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 17 AAGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhee
Confidence 345566788899999886
No 7
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=3.70 E-value=4.1e+02 Score=15.05 Aligned_cols=19 Identities=47% Similarity=0.618 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 018051 299 TALVIEGIFNSASAGILIY 317 (361)
Q Consensus 299 ~~~~~~gil~alaaGtflY 317 (361)
++.++..+-.++.||.++=
T Consensus 10 tAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 10 TAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp BHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3556777788899998763
No 8
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.45 E-value=3.9e+02 Score=14.36 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 018051 345 FSLLLGSGCMSLLAKW 360 (361)
Q Consensus 345 ~~~~lG~~lMa~l~~w 360 (361)
+.+..|+..|.++-+|
T Consensus 10 ~~i~fgi~mmtliviy 25 (36)
T d1rkla_ 10 LAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHH
Confidence 4577888888887765
No 9
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.36 E-value=3.8e+02 Score=14.01 Aligned_cols=19 Identities=32% Similarity=0.191 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018051 341 LGANFSLLLGSGCMSLLAK 359 (361)
Q Consensus 341 ~~~~~~~~lG~~lMa~l~~ 359 (361)
++.+-.+++|+++-+++-+
T Consensus 10 ~lsfglifvgwglgalllk 28 (32)
T d2e74f1 10 LLSFGLIFVGWGLGVLLLK 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHhh
Confidence 4566778888888777643
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.36 E-value=3.1e+02 Score=17.16 Aligned_cols=13 Identities=54% Similarity=1.081 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHh
Q 018051 7 FLFIFFCFLLILL 19 (361)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (361)
|...|..|++|.|
T Consensus 33 ~m~Lf~vfl~iiL 45 (64)
T d2axth1 33 FMGLFLVFLLIIL 45 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445666777665
Done!