BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018055
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F4F|A Chain A, X-Ray Crystal Structure Of Plp Bound Threonine Synthase
From Brucella Melitensis
pdb|4F4F|B Chain B, X-Ray Crystal Structure Of Plp Bound Threonine Synthase
From Brucella Melitensis
Length = 468
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 23/102 (22%)
Query: 169 FLPQVVSQIAGTVEELYALGGRTFLVLNLAPIGCYPAFLVQLPHSSSDLDAYGCMISYNN 228
+LPQ Q T E++ AL G++++ + LA V P + ++ A
Sbjct: 35 YLPQEYPQF--TAEQIRALRGKSYVEVALA---------VLTPFTGGEIPA--------- 74
Query: 229 AVLDYNNMLKEALAQTRRNLPNASLICVDTHSVLLELFQNPT 270
D+ M++EA T R+ L+ D + +LELF PT
Sbjct: 75 --ADFERMVREAYG-TFRHDAVCPLVQTDANEFVLELFHGPT 113
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 18/107 (16%)
Query: 62 GPFGMTYFKRPAGRASDGRLIVDFLA-QALGLPFLSPYLQSIGSDYRHGANYATLASTVL 120
GP GM + GR R IVD +A QA+ LP+ SP+ + R ATL L
Sbjct: 59 GPAGMWCAQVGYGR----REIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDL 114
Query: 121 LPNTSLFVTGISP-----------FSLAIQLNQMKEFKARVDEFHSS 156
N F TG S ++ + Q K R D +H S
Sbjct: 115 --NRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGS 159
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 223 MISYNNAVLDYNNMLKEALAQTRRNLPNASLICVDTHSVLLELFQNPTSHGLKYGTQACC 282
++ + + ++D M KE + RNLP+ L + ++ N S+ LKY +
Sbjct: 5 IVRFMSLIIDRFEMTKEQHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEG-- 62
Query: 283 GH 284
GH
Sbjct: 63 GH 64
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166)
From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 68 YFKRPAGRASDGRLIVDFLAQALGLPFLSPYLQSIGSDYRHGANYATLASTVLLPN---- 123
Y KRP G+ G + L LG P L IG G+ A + S +L+
Sbjct: 23 YHKRPMGKVKPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGS-VANMVSNILVSQGYRV 81
Query: 124 TSLFVTGISPFSLAIQLNQ 142
S + +S F I+LN+
Sbjct: 82 GSYYSPHLSTFRERIRLNE 100
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 127 FVTGISPFSLAIQLNQMKEFKARVDEFHSSCTSAIGIGGVKQFLPQ-----VVSQIAGT- 180
F+ +S F L++ +++ R E + T +GIG +++ + ++++++G
Sbjct: 457 FLRQVSTFGLSLVKLDIRQESDRHTEVLDAITQHLGIGSYREWSEEKRQEWLLAELSGKR 516
Query: 181 ---------VEELYALGGRTFLVLNLAPIGCYPAFLVQLPHSSSDL 217
EE+ TF VL P C+ A+++ + S+SD+
Sbjct: 517 PLIGPDLPKTEEVKDCLD-TFKVLAELPSDCFGAYIISMATSTSDV 561
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 74 GRASDGRLIVDFLAQALGLPFLSPYLQSIG 103
GR + GRL+ D G+PFL+ Y+ S+G
Sbjct: 67 GRDASGRLMPDPKRFPHGIPFLADYVHSLG 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,076,169
Number of Sequences: 62578
Number of extensions: 452551
Number of successful extensions: 952
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 14
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)