Query 018056
Match_columns 361
No_of_seqs 248 out of 2084
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03406 Band_7_3 A subgroup of 100.0 9.8E-51 2.1E-55 381.3 31.8 280 50-329 1-280 (280)
2 KOG2962 Prohibitin-related mem 100.0 7.1E-45 1.5E-49 320.7 31.0 291 49-339 18-308 (322)
3 PRK11029 FtsH protease regulat 100.0 1.2E-42 2.5E-47 334.2 31.9 257 49-335 15-323 (334)
4 PRK10930 FtsH protease regulat 100.0 1.6E-41 3.5E-46 334.6 33.3 253 47-331 90-346 (419)
5 TIGR01932 hflC HflC protein. H 100.0 9.1E-41 2E-45 321.4 31.8 257 49-335 15-313 (317)
6 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.6E-39 3.4E-44 301.9 27.6 235 54-306 1-241 (242)
7 TIGR01933 hflK HflK protein. H 100.0 3.5E-38 7.7E-43 296.2 29.9 248 54-334 1-254 (261)
8 cd03404 Band_7_HflK Band_7_Hfl 100.0 1E-36 2.2E-41 287.0 29.9 215 48-281 9-239 (266)
9 cd03407 Band_7_4 A subgroup of 100.0 1.3E-36 2.9E-41 285.6 29.1 203 59-283 1-208 (262)
10 KOG2620 Prohibitins and stomat 100.0 8.4E-37 1.8E-41 274.5 12.8 257 55-335 10-278 (301)
11 COG0330 HflC Membrane protease 100.0 7E-32 1.5E-36 257.2 30.2 198 48-262 15-222 (291)
12 cd03403 Band_7_stomatin_like B 100.0 2.7E-32 5.8E-37 248.9 24.0 180 57-254 1-185 (215)
13 cd03401 Band_7_prohibitin Band 100.0 5.3E-32 1.1E-36 243.6 22.7 156 53-216 1-160 (196)
14 cd03402 Band_7_2 A subgroup of 100.0 4.4E-31 9.5E-36 241.3 19.0 161 53-224 1-171 (219)
15 smart00244 PHB prohibitin homo 99.9 1.8E-26 3.8E-31 199.9 17.9 154 52-216 1-158 (160)
16 KOG2621 Prohibitins and stomat 99.9 1.8E-26 3.9E-31 210.3 17.3 155 50-215 51-209 (288)
17 KOG3090 Prohibitin-like protei 99.9 1.7E-24 3.6E-29 191.0 21.7 188 27-236 18-209 (290)
18 PF01145 Band_7: SPFH domain / 99.9 2.1E-25 4.6E-30 196.5 10.9 154 55-216 1-159 (179)
19 KOG3083 Prohibitin [Posttransl 99.8 8.4E-21 1.8E-25 167.5 11.0 173 47-235 20-197 (271)
20 cd03408 Band_7_5 A subgroup of 99.8 3.9E-19 8.5E-24 161.0 15.2 162 49-216 11-205 (207)
21 COG2268 Uncharacterized protei 99.7 5.8E-16 1.3E-20 155.1 26.3 195 54-259 35-251 (548)
22 cd03400 Band_7_1 A subgroup of 99.6 1.7E-15 3.6E-20 126.5 11.7 117 93-216 3-122 (124)
23 KOG2668 Flotillins [Intracellu 99.6 3.1E-13 6.7E-18 126.8 19.7 196 54-262 2-207 (428)
24 cd03399 Band_7_flotillin Band_ 99.6 2.8E-14 6E-19 119.8 10.5 117 93-214 2-124 (128)
25 cd02106 Band_7 The band 7 doma 99.3 8E-11 1.7E-15 96.2 12.4 107 101-216 10-119 (121)
26 PF13421 Band_7_1: SPFH domain 99.1 1.3E-08 2.9E-13 92.6 18.1 159 51-216 13-205 (211)
27 PTZ00491 major vault protein; 98.5 5.6E-05 1.2E-09 79.9 25.8 146 54-209 464-643 (850)
28 COG4260 Membrane protease subu 98.2 5.7E-05 1.2E-09 70.1 14.9 159 52-216 39-232 (345)
29 cd03405 Band_7_HflC Band_7_Hfl 97.2 0.0041 8.8E-08 57.6 10.8 117 178-321 120-239 (242)
30 TIGR01933 hflK HflK protein. H 97.1 0.0099 2.1E-07 55.8 12.6 67 244-321 169-236 (261)
31 TIGR01932 hflC HflC protein. H 96.8 0.008 1.7E-07 58.2 9.9 68 243-321 226-294 (317)
32 PRK11029 FtsH protease regulat 96.6 0.022 4.7E-07 55.5 11.5 90 236-340 229-319 (334)
33 cd03404 Band_7_HflK Band_7_Hfl 96.3 0.04 8.7E-07 51.7 10.8 29 233-261 207-235 (266)
34 COG1580 FliL Flagellar basal b 95.6 0.29 6.3E-06 42.5 12.2 55 148-205 102-157 (159)
35 PF12127 YdfA_immunity: SigmaW 95.6 0.56 1.2E-05 44.0 14.4 96 108-215 135-230 (316)
36 cd03407 Band_7_4 A subgroup of 95.3 0.09 2E-06 49.4 8.9 88 238-334 157-253 (262)
37 PRK10930 FtsH protease regulat 94.8 0.33 7.2E-06 48.8 11.6 88 172-262 213-305 (419)
38 KOG2668 Flotillins [Intracellu 94.5 0.92 2E-05 43.9 13.0 27 236-262 287-313 (428)
39 PRK13665 hypothetical protein; 94.5 0.76 1.7E-05 42.9 12.0 96 108-215 140-235 (316)
40 COG0330 HflC Membrane protease 92.4 1.3 2.7E-05 42.1 10.6 18 236-253 207-224 (291)
41 KOG2620 Prohibitins and stomat 91.9 0.65 1.4E-05 43.3 7.3 32 241-277 174-205 (301)
42 COG2268 Uncharacterized protei 88.9 3.2 6.9E-05 42.9 10.1 35 265-301 413-447 (548)
43 PF03748 FliL: Flagellar basal 88.4 1.5 3.1E-05 34.5 5.9 52 149-204 44-96 (99)
44 cd03403 Band_7_stomatin_like B 88.1 1.9 4.2E-05 38.8 7.3 10 322-331 206-215 (215)
45 PRK01558 V-type ATP synthase s 84.8 29 0.00063 31.1 14.9 47 209-257 4-50 (198)
46 PRK01005 V-type ATP synthase s 84.6 18 0.00039 32.8 11.6 53 207-261 7-59 (207)
47 PRK06231 F0F1 ATP synthase sub 82.0 37 0.0008 30.7 12.6 15 166-180 75-89 (205)
48 cd03401 Band_7_prohibitin Band 81.7 2.3 4.9E-05 37.8 4.6 11 197-207 136-146 (196)
49 COG4864 Uncharacterized protei 80.8 41 0.0009 30.8 12.1 70 141-215 165-234 (328)
50 PLN03086 PRLI-interacting fact 79.3 7.9 0.00017 40.4 8.1 17 322-338 90-106 (567)
51 PRK07718 fliL flagellar basal 78.3 5.8 0.00013 33.7 5.8 52 149-204 87-139 (142)
52 PRK01558 V-type ATP synthase s 77.5 29 0.00062 31.2 10.3 29 232-260 14-42 (198)
53 PRK14471 F0F1 ATP synthase sub 75.8 51 0.0011 28.4 12.5 18 164-181 33-50 (164)
54 PRK08455 fliL flagellar basal 74.9 8.1 0.00018 34.4 5.9 53 148-204 126-179 (182)
55 PRK14475 F0F1 ATP synthase sub 74.6 57 0.0012 28.3 12.5 18 164-181 35-52 (167)
56 PTZ00491 major vault protein; 74.4 26 0.00057 38.2 10.4 17 323-339 823-839 (850)
57 PRK14472 F0F1 ATP synthase sub 73.6 62 0.0013 28.3 12.6 19 163-181 42-60 (175)
58 PRK06654 fliL flagellar basal 73.4 8.9 0.00019 34.0 5.7 51 149-205 127-177 (181)
59 PRK13460 F0F1 ATP synthase sub 72.2 66 0.0014 28.0 11.2 19 163-181 40-58 (173)
60 PRK05697 flagellar basal body- 72.1 11 0.00025 31.8 5.9 56 149-204 78-134 (137)
61 PRK13461 F0F1 ATP synthase sub 71.0 66 0.0014 27.5 12.6 18 163-180 29-46 (159)
62 PRK12785 fliL flagellar basal 70.9 11 0.00024 32.9 5.8 52 149-204 111-163 (166)
63 cd03406 Band_7_3 A subgroup of 70.6 78 0.0017 30.1 11.8 27 178-207 125-153 (280)
64 PRK13453 F0F1 ATP synthase sub 70.3 74 0.0016 27.8 12.5 18 163-180 42-59 (173)
65 CHL00019 atpF ATP synthase CF0 69.0 82 0.0018 27.8 12.6 23 160-182 45-67 (184)
66 PRK13428 F0F1 ATP synthase sub 68.5 97 0.0021 31.5 12.8 18 164-181 26-43 (445)
67 PF11978 MVP_shoulder: Shoulde 68.3 17 0.00037 29.8 5.8 67 138-206 43-116 (118)
68 PRK14474 F0F1 ATP synthase sub 67.6 1.1E+02 0.0023 28.6 12.6 20 163-182 29-48 (250)
69 PRK13454 F0F1 ATP synthase sub 66.6 92 0.002 27.5 12.4 6 164-169 56-61 (181)
70 PRK08475 F0F1 ATP synthase sub 66.6 88 0.0019 27.2 11.5 19 163-181 46-64 (167)
71 PRK07021 fliL flagellar basal 64.8 20 0.00043 31.1 6.1 56 149-204 103-159 (162)
72 PRK07352 F0F1 ATP synthase sub 64.3 98 0.0021 27.0 12.6 20 161-180 41-60 (174)
73 PRK09098 type III secretion sy 62.6 73 0.0016 29.4 9.7 28 213-240 33-61 (233)
74 TIGR03321 alt_F1F0_F0_B altern 62.1 1.3E+02 0.0029 27.8 12.6 20 163-182 29-48 (246)
75 PRK06568 F0F1 ATP synthase sub 62.0 1.1E+02 0.0023 26.6 10.4 14 245-258 66-79 (154)
76 PRK13455 F0F1 ATP synthase sub 60.8 1.2E+02 0.0026 26.7 12.5 18 164-181 52-69 (184)
77 PRK14473 F0F1 ATP synthase sub 59.1 1.2E+02 0.0025 26.1 12.5 19 163-181 32-50 (164)
78 PRK09174 F0F1 ATP synthase sub 58.5 1.4E+02 0.0031 26.9 12.6 19 164-182 78-96 (204)
79 PRK05696 fliL flagellar basal 58.4 26 0.00057 30.6 5.7 56 148-204 110-167 (170)
80 PRK02292 V-type ATP synthase s 57.2 1.4E+02 0.0029 26.3 11.1 34 227-260 14-47 (188)
81 PRK01194 V-type ATP synthase s 49.6 1.9E+02 0.004 25.6 10.5 9 322-330 119-127 (185)
82 PRK06569 F0F1 ATP synthase sub 47.5 1.4E+02 0.0029 25.9 8.2 6 308-313 127-132 (155)
83 PRK01005 V-type ATP synthase s 46.8 2.2E+02 0.0049 25.8 11.2 18 226-243 35-52 (207)
84 PRK02292 V-type ATP synthase s 45.7 1.2E+02 0.0026 26.6 8.0 15 227-241 25-39 (188)
85 PRK09173 F0F1 ATP synthase sub 42.6 2.1E+02 0.0046 24.3 12.7 17 164-180 27-43 (159)
86 KOG4753 Predicted membrane pro 42.2 75 0.0016 26.2 5.4 47 24-85 51-97 (124)
87 PRK07353 F0F1 ATP synthase sub 41.7 2E+02 0.0044 23.8 12.5 6 164-169 30-35 (140)
88 KOG3090 Prohibitin-like protei 40.3 2.5E+02 0.0055 25.9 9.0 11 322-332 264-274 (290)
89 PRK09098 type III secretion sy 38.6 2E+02 0.0044 26.5 8.6 27 234-260 44-70 (233)
90 CHL00080 psbM photosystem II p 38.5 26 0.00056 22.2 1.7 19 29-47 5-23 (34)
91 PRK13665 hypothetical protein; 37.2 81 0.0018 29.8 5.6 16 193-208 207-223 (316)
92 KOG0742 AAA+-type ATPase [Post 36.9 4.8E+02 0.01 26.7 14.1 17 267-283 205-221 (630)
93 PRK04989 psbM photosystem II r 36.2 27 0.00058 22.3 1.6 18 29-46 5-22 (35)
94 KOG3083 Prohibitin [Posttransl 36.0 41 0.00089 30.9 3.4 12 267-278 207-218 (271)
95 KOG2621 Prohibitins and stomat 35.2 54 0.0012 31.1 4.1 52 153-208 142-197 (288)
96 PRK05759 F0F1 ATP synthase sub 33.9 2.9E+02 0.0062 23.3 12.5 6 164-169 29-34 (156)
97 PF12127 YdfA_immunity: SigmaW 32.6 1.1E+02 0.0023 29.2 5.5 16 193-208 202-218 (316)
98 TIGR03038 PS_II_psbM photosyst 31.8 36 0.00078 21.4 1.6 19 29-47 5-23 (33)
99 PRK14094 psbM photosystem II r 30.9 33 0.00072 23.4 1.4 17 29-45 5-21 (50)
100 KOG0742 AAA+-type ATPase [Post 30.3 5.8E+02 0.013 26.1 10.5 24 216-240 125-148 (630)
101 PF07946 DUF1682: Protein of u 30.3 2.4E+02 0.0052 27.3 8.0 14 49-62 42-55 (321)
102 PRK15322 invasion protein OrgB 28.5 4.5E+02 0.0098 23.9 12.1 18 315-332 97-121 (210)
103 TIGR03063 srtB_target sortase 28.3 1.1E+02 0.0023 18.8 3.2 11 16-26 1-11 (29)
104 PRK15322 invasion protein OrgB 28.1 3.4E+02 0.0073 24.6 7.8 27 231-257 14-40 (210)
105 PRK09173 F0F1 ATP synthase sub 24.6 4.4E+02 0.0094 22.4 12.1 9 207-215 24-32 (159)
106 PRK01194 V-type ATP synthase s 23.7 5.1E+02 0.011 22.8 9.9 12 231-242 18-29 (185)
107 PRK04057 30S ribosomal protein 23.2 3.6E+02 0.0077 24.4 7.1 43 144-189 127-169 (203)
108 TIGR01069 mutS2 MutS2 family p 22.7 8.7E+02 0.019 26.6 11.3 9 193-201 456-464 (771)
109 PF05151 PsbM: Photosystem II 22.1 44 0.00096 20.7 0.8 19 29-47 5-23 (31)
110 KOG1144 Translation initiation 22.0 6.7E+02 0.015 27.7 9.7 14 210-223 219-232 (1064)
111 COG5341 Uncharacterized protei 21.2 91 0.002 25.9 2.6 39 33-74 14-52 (132)
No 1
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=9.8e-51 Score=381.32 Aligned_cols=280 Identities=63% Similarity=0.987 Sum_probs=250.2
Q ss_pred hhceEEEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEEEEEEEEEeccchhH
Q 018056 50 SLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKE 129 (361)
Q Consensus 50 l~~~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v~~v~~rI~dp~~~~ 129 (361)
+++|+++|++|++|||+|||++.+++++|||||++||+++|..+|+++++.+..++++.|+|++++.++.|.+.+..++.
T Consensus 1 ~~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~ 80 (280)
T cd03406 1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPD 80 (280)
T ss_pred CCceEEEECCCeEEEEEECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHH
Confidence 35789999999999999999998777899999999999999999999988877677889999998866545433332233
Q ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChh
Q 018056 130 YVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDR 209 (361)
Q Consensus 130 ~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~ 209 (361)
.+|+.+.+|+.++....|.+.+++++|+++|+++++++++++|++|...+++.+++.++.|.+||+|.+|.|++++||++
T Consensus 81 ~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~ 160 (280)
T cd03406 81 SVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEA 160 (280)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHH
Confidence 48888877888888999999999999999999999999998999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhccc
Q 018056 210 IRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLA 289 (361)
Q Consensus 210 i~~a~e~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~~~~~A 289 (361)
+.++|++|++||+++.+|.|.....+.+||.++.....+|+++++++.+.-++++.++|+.+..++.+.+++.++.++.|
T Consensus 161 V~~aferM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (280)
T cd03406 161 IRRNYELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIEDEAFLAREKAKA 240 (280)
T ss_pred HHHHHHHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhhcc
Confidence 99999999999999887776666555556555666777889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccccCcHHHHHHHHHHHHhccCeEEEc
Q 018056 290 DADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFG 329 (361)
Q Consensus 290 ea~~~~~~~~a~a~~~~l~~~~l~~~~~e~~~~~~~ii~~ 329 (361)
||++|...+++++|+..+||+||+|+.++++..|+|||++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (280)
T cd03406 241 DAEYYTAQKEAEANKLKLTPEYLELMKYEAIAANSKIYFG 280 (280)
T ss_pred CHHHHHHHHHHhhchhcCCHHHHHHHHHHHHHhcCccccC
Confidence 9999999999999999999999999999999999999863
No 2
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=100.00 E-value=7.1e-45 Score=320.70 Aligned_cols=291 Identities=65% Similarity=1.041 Sum_probs=279.0
Q ss_pred hhhceEEEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEEEEEEEEEeccchh
Q 018056 49 SSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRK 128 (361)
Q Consensus 49 ~l~~~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v~~v~~rI~dp~~~ 128 (361)
+++++++.|++|++||.+|-|.....+.+||+|+.+||+.++..+.+.+|+.++.++||+|+.||.+.++...|++-..+
T Consensus 18 ~~~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~ 97 (322)
T KOG2962|consen 18 FLSSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRP 97 (322)
T ss_pred HHHHHHhhcccCceEEEEecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhch
Confidence 56788999999999999999998887779999999999999999999999999999999999999998888888888877
Q ss_pred HHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCCh
Q 018056 129 EYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPD 208 (361)
Q Consensus 129 ~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~ 208 (361)
.++|..+++|++++...+|-+-+...+.+.++.+|+.+++-+--++|.++++..|++++..+..|++|..|++.....|+
T Consensus 98 d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPE 177 (322)
T KOG2962|consen 98 DAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPE 177 (322)
T ss_pred hHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChH
Confidence 78999999999999999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhcc
Q 018056 209 RIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGL 288 (361)
Q Consensus 209 ~i~~a~e~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~~~~~ 288 (361)
.++.-||.|++|+.+..+|.+.+...+.|||+++..+..|||+.++++.+.-+..+.++|.+++.++.|.+++.++.+.+
T Consensus 178 aiRrN~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~eiE~~~~Lareksk 257 (322)
T KOG2962|consen 178 AIRRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEKETEKRISEIEDAAFLAREKSK 257 (322)
T ss_pred HHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhccccCcHHHHHHHHHHHHhccCeEEEcCCCchhHHhh
Q 018056 289 ADADFYRVLKEAEANKLMLTPEYLELKFIEAIADNTKIFFGEKVPSMILDQ 339 (361)
Q Consensus 289 Aea~~~~~~~~a~a~~~~l~~~~l~~~~~e~~~~~~~ii~~~~~~~~~~~~ 339 (361)
|||+.|+..+++++|+..+||+||+++.+++++.|+||+++.+.|++++++
T Consensus 258 ADAe~Y~a~k~AeaNKlkLTpEyLeLkk~~AIAsNsKIyfGd~ip~~fv~~ 308 (322)
T KOG2962|consen 258 ADAEYYRALKEAEANKLKLTPEYLELKKIDAIASNSKIYFGDKIPNMFVDS 308 (322)
T ss_pred ccHHHHHHHHHHhhccccCCHHHHHHHHHHHHHhcCeeeecccchHHHHHH
Confidence 999999999999999999999999999999999999999999999998775
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=1.2e-42 Score=334.23 Aligned_cols=257 Identities=16% Similarity=0.227 Sum_probs=205.8
Q ss_pred hhhceEEEecCCeEEEEEeCCeecee------eeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEE---EEEE
Q 018056 49 SSLAILHQIPEGHVGVYWRGGALLET------ITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEK 119 (361)
Q Consensus 49 ~l~~~~~~V~~ge~gVv~r~Gk~~~~------~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~ 119 (361)
|+++|+++|++||+|||++||+++++ +++|||||++||+++|..+|+|.++.+.....+.|+|++.+ .++.
T Consensus 15 ~l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~ 94 (334)
T PRK11029 15 VLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIK 94 (334)
T ss_pred HHHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEE
Confidence 67889999999999999999999874 37999999999999999999999887766566789998755 5779
Q ss_pred EEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhh-------------
Q 018056 120 IEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVD------------- 186 (361)
Q Consensus 120 ~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~------------- 186 (361)
|+|.||.+ +|..+..-+.+.....|.+.+++++|+++|+++++++++++|++|..++++.+++.
T Consensus 95 yrI~Dp~~---~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~ 171 (334)
T PRK11029 95 WRISDFSR---YYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAA 171 (334)
T ss_pred EEECCHHH---HHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccccccccc
Confidence 99999876 34332211233456789999999999999999999999878999999999999864
Q ss_pred --------------------------cccCCCCeEEEEEEEeCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 187 --------------------------CTRYAPGIEIISVRVTKPTIPDRIRRNFE-QMEEERTRVLIAIEKQKVAEKEAE 239 (361)
Q Consensus 187 --------------------------l~~~~~GI~I~~V~I~~i~~p~~i~~a~e-~m~Aere~~~~A~q~~~~~~~eAe 239 (361)
+..| ||+|.+|+|++++||+++.++|+ +|+|||++ ++.+.++||+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~------~a~~~~aege 243 (334)
T PRK11029 172 DDAIASAAERVEAETKGKVPVINPNSMAAL--GIEVVDVRIKQINLPTEVSDAIYNRMRAEREA------VARRHRSQGQ 243 (334)
T ss_pred ccccccchhhcccccccccccccccccccC--CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 3567 99999999999999999999988 89999998 4555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH-hhcccCHHHHHHHHHHHhccccCcHHHHHHHHHH
Q 018056 240 TSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR-QRGLADADFYRVLKEAEANKLMLTPEYLELKFIE 318 (361)
Q Consensus 240 ~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~-~~~~Aea~~~~~~~~a~a~~~~l~~~~l~~~~~e 318 (361)
++++..+++|++++.+..++| ++++++++|+|+|+++... ..+..+|++|.|++.+++|+.
T Consensus 244 ~~a~~~~a~A~~e~~~~~AeA-----~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea~~~------------- 305 (334)
T PRK11029 244 EEAEKLRATADYEVTRTLAEA-----ERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYEN------------- 305 (334)
T ss_pred HHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------------
Confidence 666666677777777666655 5788899999988776552 355667888888888776553
Q ss_pred HHh--ccCeEEEcCCCchh
Q 018056 319 AIA--DNTKIFFGEKVPSM 335 (361)
Q Consensus 319 ~~~--~~~~ii~~~~~~~~ 335 (361)
.. +++++++|++++++
T Consensus 306 -~~~~~~~~~vl~~~~~~~ 323 (334)
T PRK11029 306 -SFSGNQDVMVLSPDSDFF 323 (334)
T ss_pred -HhcCCCcEEEECCChHHH
Confidence 33 24568889888544
No 4
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1.6e-41 Score=334.63 Aligned_cols=253 Identities=17% Similarity=0.203 Sum_probs=202.1
Q ss_pred hhhhhceEEEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEE---EEEEEEEe
Q 018056 47 VKSSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVV 123 (361)
Q Consensus 47 ~~~l~~~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~ 123 (361)
+.|+++||++|+++|+|||+|||+++++ ++|||||++||+++|..+|++.+........+.|+|++.| .++.|+|.
T Consensus 90 ~i~l~sg~yiV~e~E~gVV~rFGk~~~~-l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~ 168 (419)
T PRK10930 90 IIWAASGFYTIKEAERGVVTRFGKFSHL-VEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVT 168 (419)
T ss_pred HHHHHheEEEECCCeEEEEEECCcCcce-eCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEEC
Confidence 3588999999999999999999999887 7999999999999999999877654333345789998655 57899999
Q ss_pred ccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeC
Q 018056 124 NRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTK 203 (361)
Q Consensus 124 dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~ 203 (361)
||.+ |+| ++.+++..|.+.++++||+++|+++++++++++|++|..++++.|++.++.|++||+|++|.|++
T Consensus 169 Dp~~--~lf------~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~d 240 (419)
T PRK10930 169 DPEK--YLF------SVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQA 240 (419)
T ss_pred CHHH--HHH------hccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEee
Confidence 9876 343 56778899999999999999999999999998899999999999999999988899999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 018056 204 PTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLA 283 (361)
Q Consensus 204 i~~p~~i~~a~e~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~ 283 (361)
++||+++++||++|.++|+.. ++.+.++|+.+.. .+.+|+.+++....+|+| ++++.+++|+|+|+.+..
T Consensus 241 i~pP~eV~~Af~~v~~Are~~-----~~~i~eAeayan~--iip~A~gea~~ii~~AeA---yr~~~i~~AeGda~rF~~ 310 (419)
T PRK10930 241 ARPPEEVKAAFDDAIAARENE-----QQYIREAEAYTNE--VQPRANGQAQRILEEARA---YKAQTILEAQGEVARFAK 310 (419)
T ss_pred cCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHH
Confidence 999999999999988777664 3445544444444 444455555555555554 788888888887766544
Q ss_pred HhhcccCHHHHHHHHHHHhccccCcHHHHHHHHHHHHhcc-CeEEEcCC
Q 018056 284 RQRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIADN-TKIFFGEK 331 (361)
Q Consensus 284 ~~~~~Aea~~~~~~~~a~a~~~~l~~~~l~~~~~e~~~~~-~~ii~~~~ 331 (361)
.|..|.++ ..+|.++|++.+||.+.++ .|++++.+
T Consensus 311 ---------i~~~Y~ka----P~vtr~RlYletme~vl~~~~kvivd~~ 346 (419)
T PRK10930 311 ---------LLPEYKAA----PEITRERLYIETMEKVLGHTRKVLVNDK 346 (419)
T ss_pred ---------HHHHHhhC----HHHHHHHHHHHHHHHHHccCCEEEEeCC
Confidence 22223322 2678889999999999875 66888553
No 5
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=9.1e-41 Score=321.40 Aligned_cols=257 Identities=19% Similarity=0.222 Sum_probs=196.9
Q ss_pred hhhceEEEecCCeEEEEEeCCeeceee------eCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEE---EEEE
Q 018056 49 SSLAILHQIPEGHVGVYWRGGALLETI------THPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEK 119 (361)
Q Consensus 49 ~l~~~~~~V~~ge~gVv~r~Gk~~~~~------l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~ 119 (361)
++++||++|++||+|||++||++.++. ++|||||++||++++..+|+|.++.+.....+.|+|++.+ .++.
T Consensus 15 ~l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~ 94 (317)
T TIGR01932 15 VLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIR 94 (317)
T ss_pred HHHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEE
Confidence 577899999999999999999998764 3799999999999999999999987766667889998765 5779
Q ss_pred EEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHH------------------------
Q 018056 120 IEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQI------------------------ 175 (361)
Q Consensus 120 ~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i------------------------ 175 (361)
|+|.||.+ +|..+++-+.++.+..|.+.+++++|+++|+|+++++++++|++|
T Consensus 95 yrV~d~~~---~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (317)
T TIGR01932 95 WRIEDFKK---YYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITK 171 (317)
T ss_pred EEECCHHH---HHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccch
Confidence 99988765 444432101345678899999999999999999999998767766
Q ss_pred -----HHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 176 -----DEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFE-QMEEERTRVLIAIEKQKVAEKEAETSKKMAISEA 249 (361)
Q Consensus 176 -----~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e-~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeA 249 (361)
...|.+.+.+.+.+| ||+|++|.|++++||++++++++ +|+|||++. |.+.+. +|+.+++...++|
T Consensus 172 ~r~~l~~~i~~~~~~~~~~~--Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~--a~~~r~----ege~~a~~i~a~A 243 (317)
T TIGR01932 172 GREILAREISQIANSQLKDI--GIEVVDVRIKKINYSDELSESIYNRMRSEREQI--ARMHRS----QGEEKAEEILGKA 243 (317)
T ss_pred hhhhHHHHHHHHHHHHHhcC--CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH--HHHHHH----HHHHHHHHHHHHH
Confidence 557788888899999 99999999999999999999987 899999874 444444 4444444455677
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH-hhcccCHHHHHHHHHHHhccccCcHHHHHHHHHHHHhc--cCeE
Q 018056 250 EKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR-QRGLADADFYRVLKEAEANKLMLTPEYLELKFIEAIAD--NTKI 326 (361)
Q Consensus 250 e~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~-~~~~Aea~~~~~~~~a~a~~~~l~~~~l~~~~~e~~~~--~~~i 326 (361)
++++.+..++| ++++.+++|+|+|+++... ..+..+|++|++.+.+++ ++++.+ ++++
T Consensus 244 ~~e~~~~~aeA-----~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le~--------------~~~~~~~~~~~~ 304 (317)
T TIGR01932 244 EYEVRKILSEA-----YRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEA--------------YEKSFKDNQDEK 304 (317)
T ss_pred HHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHHH--------------HHHHhCCCCCEE
Confidence 77776666665 4577888888877666542 234455555555554433 445543 4568
Q ss_pred EEcCCCchh
Q 018056 327 FFGEKVPSM 335 (361)
Q Consensus 327 i~~~~~~~~ 335 (361)
+++++++.+
T Consensus 305 vl~~~~~~~ 313 (317)
T TIGR01932 305 VLSTDSEFF 313 (317)
T ss_pred EECCCcHHH
Confidence 889988765
No 6
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.6e-39 Score=301.86 Aligned_cols=235 Identities=20% Similarity=0.307 Sum_probs=194.5
Q ss_pred EEEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEE---EEEEEEEeccchhHH
Q 018056 54 LHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKEY 130 (361)
Q Consensus 54 ~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~ 130 (361)
+++|++||+||+++||++.+++++||+||++||++++..+|++.++.+....++.|+|++.+ .++.|+|.||.+
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~--- 77 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLR--- 77 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHH---
Confidence 57999999999999999998768999999999999999999999877666677899999766 467999998765
Q ss_pred HHHHHhhcCcc-chHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChh
Q 018056 131 VYETLRDYGVQ-YDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDR 209 (361)
Q Consensus 131 ~y~~~~~~~~~-~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~ 209 (361)
+|..++ +.+ ..+..|.+.+++++|+++|+++++++++++|++|++.+++.|++.+++| ||+|++|.|++|+||++
T Consensus 78 ~~~~~~--~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~ 153 (242)
T cd03405 78 FYQAVG--GEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKEL--GIEVVDVRIKRIDLPEE 153 (242)
T ss_pred HHHHhc--ChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHcc--CcEEEEEEEEeccCCHH
Confidence 565543 222 2358899999999999999999999998569999999999999999999 99999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHh-hc
Q 018056 210 IRRNFE-QMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQ-RG 287 (361)
Q Consensus 210 i~~a~e-~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~~-~~ 287 (361)
+.++|+ +|+++|++ .+++.+++++.++.+..++|++++.+..|+| ++++.+++|+|+|+++.... ..
T Consensus 154 i~~ai~~~~~ae~~~------~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea-----~a~a~~~~a~gea~a~~~~~~a~ 222 (242)
T cd03405 154 VSESVYRRMRAERER------IAAEFRAEGEEEAERIRADADRERTVILAEA-----YREAQEIRGEGDAEAARIYAEAY 222 (242)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHHH
Confidence 999987 79999987 3445555666665556666776666665555 56888999999888865543 56
Q ss_pred ccCHHHHHHHHHHHhcccc
Q 018056 288 LADADFYRVLKEAEANKLM 306 (361)
Q Consensus 288 ~Aea~~~~~~~~a~a~~~~ 306 (361)
+.+|+++.+++.+++++.+
T Consensus 223 ~~~p~~~~~~~~l~~~~~~ 241 (242)
T cd03405 223 GKDPEFYAFYRSLEAYRNS 241 (242)
T ss_pred cCCHHHHHHHHHHHHHHhh
Confidence 7789999999998887643
No 7
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=3.5e-38 Score=296.16 Aligned_cols=248 Identities=18% Similarity=0.230 Sum_probs=186.6
Q ss_pred EEEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEE---EEEEEEEeccchhHH
Q 018056 54 LHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKEY 130 (361)
Q Consensus 54 ~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~ 130 (361)
+|+|++||+|||++||+++++ ++||+||++||++++..+|++.+........+.|+|++.+ .++.|||.||.+ +
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~-l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~--~ 77 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRT-VDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYK--Y 77 (261)
T ss_pred CEEeCCCeEEEEEEcCccccc-cCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHH--H
Confidence 579999999999999999888 6999999999999999999875432222234679999765 467999998876 3
Q ss_pred HHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhH
Q 018056 131 VYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRI 210 (361)
Q Consensus 131 ~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i 210 (361)
+| +.++++..|.+.+++++|+++|+++++++++++|++|++.|.+.+++.++.|++||+|++|.|++++||+++
T Consensus 78 ~~------~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v 151 (261)
T TIGR01933 78 LF------SVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEV 151 (261)
T ss_pred HH------hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHH
Confidence 33 567788999999999999999999999999878999999999999999998777999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH-hhccc
Q 018056 211 RRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR-QRGLA 289 (361)
Q Consensus 211 ~~a~e~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~-~~~~A 289 (361)
+++|++|.++++.. ++.+.++++++...+..|++++++.+.+|+| ++++++++|+|+|+++... ..+..
T Consensus 152 ~~a~~~~~~a~q~~-----~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea-----~~~~~~~~a~g~a~~~~~~~~ay~~ 221 (261)
T TIGR01933 152 KEAFDDVIIAREDE-----ERYINEAEAYANEVVPKARGDAQRIIEEARG-----YKERRINRAKGDVARFTKLLAEYKK 221 (261)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999766544432 3445555555555555566666555554444 5678888888877765441 12223
Q ss_pred CHHHHHHHHHHHhccccCcHHHHHHHHHHHHhc-cCe-EEEcCCCch
Q 018056 290 DADFYRVLKEAEANKLMLTPEYLELKFIEAIAD-NTK-IFFGEKVPS 334 (361)
Q Consensus 290 ea~~~~~~~~a~a~~~~l~~~~l~~~~~e~~~~-~~~-ii~~~~~~~ 334 (361)
+|++ +..++++..+++|.+ +++ ++++++++.
T Consensus 222 ~p~~--------------~~~~~~le~~~~~~~~~~~~~~~~~~~~~ 254 (261)
T TIGR01933 222 APDV--------------TRERLYLETMEKVLSNTRKVLLDDKKGNN 254 (261)
T ss_pred ChHH--------------HHHHHHHHHHHHHHccCCeEEEECCCCCe
Confidence 3333 344445555667764 444 666776653
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1e-36 Score=286.99 Aligned_cols=215 Identities=17% Similarity=0.248 Sum_probs=164.0
Q ss_pred hhhhceEEEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEE-Eeeeeee------------ccccccccccCceE
Q 018056 48 KSSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPV-QVTLQTD------------QVTDIPCGTKGGVM 114 (361)
Q Consensus 48 ~~l~~~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~v-d~r~q~~------------~~~~~~~~Tkd~v~ 114 (361)
.|+++|+++|++||+|||++||+++++ ++||+||++||++++..+ |++.++. ......+.|+|++.
T Consensus 9 ~~~~~s~~~V~~ge~gVV~~fGk~~~~-~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~ 87 (266)
T cd03404 9 LWLLSGFYIVQPGERGVVLRFGKYSRT-VEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENI 87 (266)
T ss_pred HHHHcEEEEECCCceEEeEEcCccccc-cCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCE
Confidence 367889999999999999999999966 799999999999887554 3432211 11123468999976
Q ss_pred E---EEEEEEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCC
Q 018056 115 I---NFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYA 191 (361)
Q Consensus 115 v---~~v~~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~ 191 (361)
+ .++.|+|.||.+ ++| +.++++..|.+.+++++|+++|+|+++++++++|++|++.|++.+++.++.|+
T Consensus 88 v~vd~~v~yrI~d~~~--~~~------~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~ 159 (266)
T cd03404 88 VDVEFAVQYRISDPYD--YLF------NVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYK 159 (266)
T ss_pred EEEEEEEEEEECCHHH--HHh------hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccC
Confidence 5 467999998875 343 45667889999999999999999999999986699999999999999999877
Q ss_pred CCeEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 018056 192 PGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSAR 271 (361)
Q Consensus 192 ~GI~I~~V~I~~i~~p~~i~~a~e~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~ 271 (361)
+||+|++|.|++++||+++.++|+++.++++.. ++.+.++++++++.+..|++++++.+..++| ++++.+
T Consensus 160 ~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~-----~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a-----~~~~~~ 229 (266)
T cd03404 160 AGIEIVGVNLQDADPPEEVQDAFDDVNKARQDR-----ERLINEAEAYANEVVPKARGEAARIIQEAEA-----YKEEVI 229 (266)
T ss_pred CCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH-----HHHhHH
Confidence 799999999999999999999999766444332 4444455555555555666665555555444 456666
Q ss_pred HHHHHHHHHH
Q 018056 272 KQEEIDNQMY 281 (361)
Q Consensus 272 ~~ae~~a~a~ 281 (361)
.+|+|+|+.+
T Consensus 230 ~~ae~~a~~~ 239 (266)
T cd03404 230 AEAQGEAARF 239 (266)
T ss_pred HHHHHHHHHH
Confidence 6666655444
No 9
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.3e-36 Score=285.60 Aligned_cols=203 Identities=19% Similarity=0.273 Sum_probs=172.0
Q ss_pred CCeEEEEEeCCeeceeeeCCeeeEEcCceeEEE-EEEeeeeeeccccccccccCceEE---EEEEEEEeccchhHHHHHH
Q 018056 59 EGHVGVYWRGGALLETITHPGFHLKLPLITHYE-PVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKEYVYET 134 (361)
Q Consensus 59 ~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~-~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~~y~~ 134 (361)
+|++|||+|||+++++ ++|||||++||++++. .+|+|.++.+... .+.|+|++.+ .++.|+|.||....++|
T Consensus 1 q~~~~Vv~rfGk~~~~-l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~-- 76 (262)
T cd03407 1 QSQVAIIERFGKFFKV-AWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVFVTVVGQIQYRVSEENATDAFY-- 76 (262)
T ss_pred CcEEEEEeecCccccc-CCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCEEEEEEEEEEEECCcHHHHHHH--
Confidence 5899999999999988 7999999999999985 7899998776543 4689999766 57799999876322344
Q ss_pred HhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHH
Q 018056 135 LRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNF 214 (361)
Q Consensus 135 ~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~ 214 (361)
+..++...|.+.+++++|+++|+++++++++ +|++|+..+.+.+++.++.| ||.|++|.|++++||++++++|
T Consensus 77 ----~~~~~~~~l~~~~~s~lR~vig~~~l~eil~-~R~~I~~~i~~~l~~~l~~~--GI~V~~v~I~~i~~p~~v~~A~ 149 (262)
T cd03407 77 ----KLGNPEEQIQSYVFDVLRARIPKLTLDELFE-QKDEIAKAVEEELREAMSRY--GFEIVATLITDIDPDAEVKRAM 149 (262)
T ss_pred ----HcCCHHHHHHHHHHHHHHHHhcCccHHHHHh-hHHHHHHHHHHHHHHHHHhc--CcEEEEEEEEecCCCHHHHHHH
Confidence 3345677999999999999999999999996 89999999999999999999 9999999999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 018056 215 E-QMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLA 283 (361)
Q Consensus 215 e-~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~ 283 (361)
+ +|.|+|++ ++.+.++|++++..+..|+|++++.+.+|+|. +++.++.|+|+++.+..
T Consensus 150 ~~~~~A~~~~------~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~-----a~a~~~~A~g~~~~~~~ 208 (262)
T cd03407 150 NEINAAQRQR------VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGA-----AEQRQAIADGLRESILS 208 (262)
T ss_pred HHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHH
Confidence 9 68899988 67788888888888888888888888877764 46777777776655544
No 10
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=8.4e-37 Score=274.46 Aligned_cols=257 Identities=18% Similarity=0.214 Sum_probs=206.3
Q ss_pred EEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEe--eeeeeccccccccccCceEEE---EEEEEEeccchhH
Q 018056 55 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQV--TLQTDQVTDIPCGTKGGVMIN---FEKIEVVNRLRKE 129 (361)
Q Consensus 55 ~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~--r~q~~~~~~~~~~Tkd~v~v~---~v~~rI~dp~~~~ 129 (361)
..||+.+++||+||||++++ |+||+||..|+++++..+-. +++ .......+.|+|||.+. +.+|||.||.+++
T Consensus 10 ~~VpQ~~a~VvER~GkF~~i-LePG~~fl~p~~d~i~~v~~lkeia-~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~d 87 (301)
T KOG2620|consen 10 RFVPQQEAAVVERFGKFHRI-LEPGLHFLPPVIDKIAYVHSLKEIA-ILDPKQEAITKDNVFVQIDGVLYYRVVDPYADD 87 (301)
T ss_pred EeechhHhHHHHHhhhhhhh-cCCcceechhhhhhHHHHHHHHHHh-hcccccceeecccEEEEEEEEEEEEEecccccc
Confidence 34999999999999999999 79999999999998876521 221 12233457899999874 5589999998743
Q ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChh
Q 018056 130 YVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDR 209 (361)
Q Consensus 130 ~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~ 209 (361)
.+ |+.++++..|..++++.+|+.+|++|||.++. .|+.++..|.+.|++.++.| |++|.+..|+||.||+.
T Consensus 88 As------Ygvenp~~aI~qlaqttmRsevgkltLD~vFe-er~~ln~sI~eainkA~~~w--G~~clr~eIrDI~pp~~ 158 (301)
T KOG2620|consen 88 AS------YGVENPEYAIQQLAQTTMRSEVGKLTLDKVFE-ERNSLNKSIVEAINKAMEAW--GYECLRYEIRDIEPPPS 158 (301)
T ss_pred cc------cccCCHHHHHHHHHHHHHHHhcccccHHHHHH-HHHHHHHHHHHHHHHHHHHh--HHHHHHHhhhhcCCCHH
Confidence 33 59999999999999999999999999999997 89999999999999999999 99999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhcc
Q 018056 210 IRRNFE-QMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGL 288 (361)
Q Consensus 210 i~~a~e-~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~~~~~ 288 (361)
++++|+ +.+|||.+ ++++.+.|++++.+|.+||++++++++..++.+ ..++.++.|++++++. .+.
T Consensus 159 V~~AM~~q~~AeR~k------rAailesEger~~~InrAEGek~s~iL~seg~~-----~qr~n~a~Gea~ail~--~A~ 225 (301)
T KOG2620|consen 159 VKRAMNMQNEAERMK------RAAILESEGERIAQINRAEGEKESKILASEGIA-----RQRQNIADGEAEAILA--FAD 225 (301)
T ss_pred HHHHHHHHHHHHHHH------HHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHH-----HHHHHHHhhHHHHHHH--Hhh
Confidence 999999 77899988 899999999999999999999999999999864 4567788899999988 444
Q ss_pred cCHHHHHHHHHHHhccccC--cHHHHHHHHHHHH---h-ccCeEEEcCCCchh
Q 018056 289 ADADFYRVLKEAEANKLML--TPEYLELKFIEAI---A-DNTKIFFGEKVPSM 335 (361)
Q Consensus 289 Aea~~~~~~~~a~a~~~~l--~~~~l~~~~~e~~---~-~~~~ii~~~~~~~~ 335 (361)
+-|.....+.....-...+ +.-+...+++.+. . .++++|+|.+....
T Consensus 226 a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~lak~sntv~lP~~pg~v 278 (301)
T KOG2620|consen 226 AVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLAKKSNTVFLPHGPGDV 278 (301)
T ss_pred cccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhcccCceEEecCCCCcH
Confidence 5554444443221100122 3334444556666 3 57888887665544
No 11
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-32 Score=257.23 Aligned_cols=198 Identities=22% Similarity=0.357 Sum_probs=166.3
Q ss_pred hhhhceEEEecCCeEEEEEeCCeeceeeeC-CeeeEEcCc---eeE-EEEEEeeeeeecc-ccccccccCceEE---EEE
Q 018056 48 KSSLAILHQIPEGHVGVYWRGGALLETITH-PGFHLKLPL---ITH-YEPVQVTLQTDQV-TDIPCGTKGGVMI---NFE 118 (361)
Q Consensus 48 ~~l~~~~~~V~~ge~gVv~r~Gk~~~~~l~-pGlhf~~P~---i~~-v~~vd~r~q~~~~-~~~~~~Tkd~v~v---~~v 118 (361)
.++++++++|++++.+++++||++.++ ++ |||||++|| ++. +..++.+.++.+. ....+.|+|+..+ .++
T Consensus 15 ~~~~~~~~~v~~~~~~vv~r~G~~~~~-~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v 93 (291)
T COG0330 15 VLLFSSIFVVKEGERGVVLRFGRYTRT-LGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVV 93 (291)
T ss_pred HHHHceeEEEcCCceEEEEEecceeee-cCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEE
Confidence 468889999999999999999999999 47 999999999 333 3556666666666 5666889998755 577
Q ss_pred EEEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEE
Q 018056 119 KIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIIS 198 (361)
Q Consensus 119 ~~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~ 198 (361)
.|||.||.. ++| +.++++..+.+.+++.+|+++|++++++++++.|..|+..+.+.|++.++.| ||+|++
T Consensus 94 ~~rv~d~~~--~~~------~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~--Gi~V~~ 163 (291)
T COG0330 94 QYRVTDPQK--AVY------NVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPW--GIKVVD 163 (291)
T ss_pred EEEEcCHHH--HHH------hcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhc--CcEEEE
Confidence 999999875 233 5566899999999999999999999999999544499999999999999999 999999
Q ss_pred EEEeCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018056 199 VRVTKPTIPDRIRRNFE-QMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQ 262 (361)
Q Consensus 199 V~I~~i~~p~~i~~a~e-~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea 262 (361)
|+|++++||+++..+|+ +|.|||++ ++.+.++++++...+..++|++++.+..++|++
T Consensus 164 V~i~~i~~p~ev~~a~~~~~~Aer~~------ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~ 222 (291)
T COG0330 164 VEIKDIDPPEEVQAAMEKQMAAERDK------RAEILEAEGEAQAAILRAEGEAEAAIILAEAEA 222 (291)
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHHH------HHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999 89999998 567777777777766667777777777666653
No 12
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=2.7e-32 Score=248.92 Aligned_cols=180 Identities=23% Similarity=0.353 Sum_probs=154.0
Q ss_pred ecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEE-EEEEeeeeeeccccccccccCceEE---EEEEEEEeccchhHHHH
Q 018056 57 IPEGHVGVYWRGGALLETITHPGFHLKLPLITHY-EPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKEYVY 132 (361)
Q Consensus 57 V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v-~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~~y 132 (361)
|++||+||+++||++.++ ++||+||++||++++ ..+|++.++.+....++.|+|++.+ ..+.|+|.||.+ ++
T Consensus 1 V~~ge~~Vv~~~G~~~~~-~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~---~~ 76 (215)
T cd03403 1 VPQYERGVVERLGKYHRT-LGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVK---AV 76 (215)
T ss_pred CCcceEEEEEEcCcCccc-cCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHH---HH
Confidence 789999999999999998 799999999999999 9999999988777777899999876 467999999876 32
Q ss_pred HHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHH
Q 018056 133 ETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRR 212 (361)
Q Consensus 133 ~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~ 212 (361)
++.++++..|.+.+++++|+++|+++++++++ +|++|++.|++.|++.+++| ||+|++|.|++++||+++.+
T Consensus 77 -----~~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~i~~i~~p~~~~~ 148 (215)
T cd03403 77 -----YGVEDYRYAISQLAQTTLRSVIGKMELDELLS-EREEINAELVEILDEATDPW--GVKVERVEIKDIILPQEIQE 148 (215)
T ss_pred -----hcCCCHHHHHHHHHHHHHHHHHccccHHHHHh-hHHHHHHHHHHHHHHHHhcc--CeEEEEEEEeeecCCHHHHH
Confidence 24566778999999999999999999999997 89999999999999999999 99999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 213 NFE-QMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNAN 254 (361)
Q Consensus 213 a~e-~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~ 254 (361)
+++ +|+|+|++ ++.+.++++++++.+..++|+++.+
T Consensus 149 ai~~~~~A~~~~------~a~i~~A~ge~~a~~~~aea~~~~~ 185 (215)
T cd03403 149 AMAKQAEAEREK------RAKIIEAEGERQAAILLAEAAKQAA 185 (215)
T ss_pred HHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHc
Confidence 999 77888876 4566666666655555555555443
No 13
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=5.3e-32 Score=243.55 Aligned_cols=156 Identities=17% Similarity=0.314 Sum_probs=133.1
Q ss_pred eEEEecCCeEEEEEeCCeecee-eeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEEE---EEEEEEeccchh
Q 018056 53 ILHQIPEGHVGVYWRGGALLET-ITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMIN---FEKIEVVNRLRK 128 (361)
Q Consensus 53 ~~~~V~~ge~gVv~r~Gk~~~~-~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v~---~v~~rI~dp~~~ 128 (361)
|+++|++|++||+++||+.++. +++||+||++||++++..+|++.++.+. ..++.|+|++.+. .+.|++ ++.++
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~-~~~~~t~d~~~V~v~~~v~y~v-~~~~~ 78 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNI-ESTTGSKDLQMVNITLRVLFRP-DASQL 78 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccccceeEEEEeeeeEEEE-eecccCCCCeEEEEEEEEEEEe-CHHHH
Confidence 5789999999999999987652 5799999999999999999999887654 3457799998762 446666 34444
Q ss_pred HHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCCh
Q 018056 129 EYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPD 208 (361)
Q Consensus 129 ~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~ 208 (361)
..+|.. |+.++.+..|.+.+++.+|+++|+|+++|+++ +|++|+..|++.+++.+++| ||.|++|.|++|+||+
T Consensus 79 ~~~~~~---~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~ 152 (196)
T cd03401 79 PRIYQN---LGEDYDERVLPSIINEVLKAVVAQFTAEELIT-QREEVSALIREALTERAKDF--GIILDDVSITHLTFSK 152 (196)
T ss_pred HHHHHH---hCcchHhhhhcHHHHHHHHHHHccCCHHHHHh-hHHHHHHHHHHHHHHHHHhC--CeEEEEEEEEeccCCH
Confidence 446655 35556677899999999999999999999996 89999999999999999999 9999999999999999
Q ss_pred hHHHHHHH
Q 018056 209 RIRRNFEQ 216 (361)
Q Consensus 209 ~i~~a~e~ 216 (361)
++.+++++
T Consensus 153 ~~~~ai~~ 160 (196)
T cd03401 153 EFTKAVEA 160 (196)
T ss_pred HHHHHHHH
Confidence 99999995
No 14
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.97 E-value=4.4e-31 Score=241.29 Aligned_cols=161 Identities=14% Similarity=0.191 Sum_probs=144.2
Q ss_pred eEEEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEE---EEEEEEEeccchhH
Q 018056 53 ILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKE 129 (361)
Q Consensus 53 ~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~ 129 (361)
|+|+|+|||+||+++||++.+++++|||||++||++. ..+|+|+++.+.....+.|+|+..+ .++.|+|.||.+
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~k-- 77 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAK-- 77 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHH--
Confidence 5899999999999999999998679999999999865 6799999887777677889999765 578999999987
Q ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhh------hcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeC
Q 018056 130 YVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYI------DVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTK 203 (361)
Q Consensus 130 ~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~------~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~ 203 (361)
++| +.+++...|.+.+++++|+++|+|+++++++ ++|++|+.++++.+++.++.| ||+|.+|+|++
T Consensus 78 a~~------~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~--GI~V~~v~I~~ 149 (219)
T cd03402 78 AVF------NVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVA--GVEVVEARITH 149 (219)
T ss_pred HHH------HcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhh--CcEEEEEEEEe
Confidence 343 6677889999999999999999999999986 358999999999999999999 99999999999
Q ss_pred CCCChhHHHHHH-HHHHHHHHH
Q 018056 204 PTIPDRIRRNFE-QMEEERTRV 224 (361)
Q Consensus 204 i~~p~~i~~a~e-~m~Aere~~ 224 (361)
++||+++.++|. ||+|||+..
T Consensus 150 l~~p~ei~~am~~R~~Ae~~~~ 171 (219)
T cd03402 150 LAYAPEIAQAMLQRQQASAIIA 171 (219)
T ss_pred ecCCHHHHHHHHHHHHHHHHHH
Confidence 999999999988 788888773
No 15
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.95 E-value=1.8e-26 Score=199.95 Aligned_cols=154 Identities=25% Similarity=0.406 Sum_probs=136.4
Q ss_pred ceEEEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEE---EEEEEEEeccchh
Q 018056 52 AILHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRK 128 (361)
Q Consensus 52 ~~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~ 128 (361)
+|+++|++||+||+++||++.++ ++||+||++||++++..+|++.++......++.|+|++.+ ..+.|+|.||.+
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~~~-~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~- 78 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLRV-LGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLK- 78 (160)
T ss_pred CcEEEEcccEEEEEEecCccccc-cCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHH-
Confidence 47899999999999999999986 7999999999999999999999987776667889999766 467999999875
Q ss_pred HHHHHHHhhcCccchH-HHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCC
Q 018056 129 EYVYETLRDYGVQYDK-TWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIP 207 (361)
Q Consensus 129 ~~~y~~~~~~~~~~~~-~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p 207 (361)
++++. .+.+ ..|.+.+++++|+++++++++++++++|+++.+.+++.+++.+++| ||+|.+|.|+++++|
T Consensus 79 -~~~~~------~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~--Gi~i~~v~i~~i~~p 149 (160)
T smart00244 79 -AVYRV------LDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAW--GIEVEDVEIKDIRLP 149 (160)
T ss_pred -Hhhhc------CCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhC--CCEEEEEEEEecCCC
Confidence 34322 2233 5899999999999999999999998679999999999999999999 999999999999999
Q ss_pred hhHHHHHHH
Q 018056 208 DRIRRNFEQ 216 (361)
Q Consensus 208 ~~i~~a~e~ 216 (361)
+++.+++++
T Consensus 150 ~~i~~ai~~ 158 (160)
T smart00244 150 EEIQEAMEQ 158 (160)
T ss_pred HHHHHHHHh
Confidence 999999985
No 16
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.94 E-value=1.8e-26 Score=210.30 Aligned_cols=155 Identities=18% Similarity=0.251 Sum_probs=141.1
Q ss_pred hhceEEEecCCeEEEEEeCCeece-eeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEE---EEEEEEEecc
Q 018056 50 SLAILHQIPEGHVGVYWRGGALLE-TITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNR 125 (361)
Q Consensus 50 l~~~~~~V~~ge~gVv~r~Gk~~~-~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp 125 (361)
+|.|+++|++.|+.||+|+|++.. ...+||+.|++|++|+..++|+|++..+++.....|||.+++ .+++|||.||
T Consensus 51 ~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dp 130 (288)
T KOG2621|consen 51 IWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDP 130 (288)
T ss_pred HHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCH
Confidence 678999999999999999999866 235999999999999999999999999998888899999887 4779999998
Q ss_pred chhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCC
Q 018056 126 LRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPT 205 (361)
Q Consensus 126 ~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~ 205 (361)
..+ + -++++.+...+-+.++++|.++|+.++.|+++ +|+.|..+++..|++....| ||+|++|+|+||.
T Consensus 131 i~s--v------~~V~Da~~sTr~lAqttLrn~lgtk~L~eils-~r~~is~~~~~~Ld~~T~~W--GvkVeRVEikDvr 199 (288)
T KOG2621|consen 131 IIA--V------NNVGDADNATRLLAQTTLRNYLGTKTLSEILS-SREVIAQEAQKALDEATEPW--GVKVERVEIKDVR 199 (288)
T ss_pred HHH--H------HhccCHHHHHHHHHHHHHHHHHccCcHHHHHH-hHHHHHHHHHHHhhhccccc--ceEEEEEEEeeee
Confidence 752 2 17788888888899999999999999999998 89999999999999999999 9999999999999
Q ss_pred CChhHHHHHH
Q 018056 206 IPDRIRRNFE 215 (361)
Q Consensus 206 ~p~~i~~a~e 215 (361)
+|.+.+.+|.
T Consensus 200 lp~qlqrama 209 (288)
T KOG2621|consen 200 LPAQLQRAMA 209 (288)
T ss_pred chHhhhhhhh
Confidence 9999888776
No 17
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-24 Score=190.98 Aligned_cols=188 Identities=19% Similarity=0.289 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhceEEEecCCeEEEEE-eCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccc
Q 018056 27 AVFLTFIAIVSLILIPSSSSVKSSLAILHQIPEGHVGVYW-RGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDI 105 (361)
Q Consensus 27 ~~~l~~~ai~~~~~~p~~~~~~~l~~~~~~V~~ge~gVv~-r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~ 105 (361)
...|.++.+.++.+ -....++|.|+-||+++++ |+|.+...++..|+||.+|||++.+.+|+|-....+ .-
T Consensus 18 ~~~l~~~~~~G~~~-------y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i-~S 89 (290)
T KOG3090|consen 18 GAGLKLLLIGGLGA-------YGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLI-SS 89 (290)
T ss_pred HHHHHHHHHhchhh-------heecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccc-cC
Confidence 34444444555433 2355789999999999999 699998888999999999999999999998764433 33
Q ss_pred cccccCceEEEEEEEEEe-ccc--hhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHH
Q 018056 106 PCGTKGGVMINFEKIEVV-NRL--RKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDA 182 (361)
Q Consensus 106 ~~~Tkd~v~v~~v~~rI~-dp~--~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~ 182 (361)
+++|+|..+|.+ ..||. .|. .-..+|+++ |.++.+..|.+++.+.+++++++|+..++++ .|+.++..|++.
T Consensus 90 ~tGskDLQmVnI-~lRVLsRP~~~~Lp~iyrtL---G~~y~ERVLPSIinEvLKaVVAqfNASqLIT-QRe~VSrliRk~ 164 (290)
T KOG3090|consen 90 PTGSKDLQMVNI-GLRVLSRPMADQLPEIYRTL---GQNYDERVLPSIINEVLKAVVAQFNASQLIT-QREQVSRLIRKI 164 (290)
T ss_pred CCCCcceeEEEe-eeEEecCCChhhhHHHHHHh---ccCcchhhhHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHH
Confidence 578999877754 34554 232 222466664 7888899999999999999999999999998 999999999999
Q ss_pred HHhhcccCCCCeEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 183 LQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEK 236 (361)
Q Consensus 183 l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e~m~Aere~~~~A~q~~~~~~~ 236 (361)
|.++..++ .|-++||.|+++.|.+++..|+|. +|+|.|+++++..
T Consensus 165 L~eRA~~F--ni~LDDVSiT~l~F~~efTaAiEa-------KQvA~QeAqRA~F 209 (290)
T KOG3090|consen 165 LTERAADF--NIALDDVSITELTFGKEFTAAIEA-------KQVAAQEAQRAKF 209 (290)
T ss_pred HHHHHhcc--ceEeecceeeeeecCHHHHHHHHH-------HHHHHHHHhhhhh
Confidence 99999998 999999999999999999999996 4556666666543
No 18
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.92 E-value=2.1e-25 Score=196.51 Aligned_cols=154 Identities=25% Similarity=0.404 Sum_probs=97.9
Q ss_pred EEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeecccc--ccccccCceEE---EEEEEEEeccchhH
Q 018056 55 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTD--IPCGTKGGVMI---NFEKIEVVNRLRKE 129 (361)
Q Consensus 55 ~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~--~~~~Tkd~v~v---~~v~~rI~dp~~~~ 129 (361)
++|++|++||++++|++..+ ++||+||++||++++..+|++.++.+... +++.|+|++.+ ..+.|+|.++..
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~-~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~-- 77 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDV-LGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPK-- 77 (179)
T ss_dssp --------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCC--
T ss_pred CEeCCCEEEEEEECCeEeEE-ECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHH--
Confidence 57999999999999999886 79999999999999999999988877766 68899999866 356899977665
Q ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChh
Q 018056 130 YVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDR 209 (361)
Q Consensus 130 ~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~ 209 (361)
++..+ .++.++.+..|++.+++++|+++++++++++++ +|.++.+.+++.|++.+..| ||+|.+|.|.++++|++
T Consensus 78 -~~~~~-~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~-~r~~~~~~v~~~l~~~~~~~--Gi~i~~v~i~~~~~~~~ 152 (179)
T PF01145_consen 78 -FVQNY-EGGEEDPENLLRQIVESALREVISSYSLEEIYS-NREEIADEVREQLQEALEEY--GIEITSVQITDIDPPQE 152 (179)
T ss_dssp -CCCCC-SS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHH-THHHHHHHHHHHHHHHHGGG--TEEEEEEEEEEEEECTT
T ss_pred -HHHhh-hcchhhhhhhhhhhhhhhhheEeeeeehHHhhh-hhhhhhHhHHHHHhhhcccc--EEEEEEEEEeecCCCHH
Confidence 44332 124567899999999999999999999999998 79999999999999999999 99999999999999999
Q ss_pred HHHHHHH
Q 018056 210 IRRNFEQ 216 (361)
Q Consensus 210 i~~a~e~ 216 (361)
+.+++++
T Consensus 153 ~~~~i~~ 159 (179)
T PF01145_consen 153 VEEAIEE 159 (179)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 19
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=8.4e-21 Score=167.54 Aligned_cols=173 Identities=14% Similarity=0.209 Sum_probs=141.4
Q ss_pred hhhhhceEEEecCCeEEEEE-eCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEE----EEEEEE
Q 018056 47 VKSSLAILHQIPEGHVGVYW-RGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI----NFEKIE 121 (361)
Q Consensus 47 ~~~l~~~~~~V~~ge~gVv~-r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v----~~v~~r 121 (361)
...+-++.|.|+-|+++|++ ||-.+...+.+.|-||.+||.++.+.+|+|.....+.. .+++||..+| .+..+-
T Consensus 20 ~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~-itGskdLQ~VniTlril~rp 98 (271)
T KOG3083|consen 20 GGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPV-ITGSKDLQNVNITLRILFRP 98 (271)
T ss_pred hhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCccccc-ccCchhhhcccceEEEEecc
Confidence 34566789999999999999 58888887789999999999999999999875433322 2577875444 333333
Q ss_pred EeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEE
Q 018056 122 VVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRV 201 (361)
Q Consensus 122 I~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I 201 (361)
+.+... ++|+++ |.||.+..|.++..+.+++++++++..++++ .|+.++..++..|.+....+ ||.+++|.|
T Consensus 99 ~~sqLP--~If~~~---G~dyDErVLpsI~~eiLKsVVa~FdA~eliT-qRe~vS~~v~~~lt~rA~~F--gl~Lddvsi 170 (271)
T KOG3083|consen 99 VVSQLP--CIFTSI---GEDYDERVLPSITTEILKSVVARFDAGELIT-QRELVSRQVSNDLTERAATF--GLILDDVSI 170 (271)
T ss_pred cccccc--hHHHhh---cccccccccccchHHHHHHHHHhccccchhh-hhHHHHHHHHHHHHHHHHhh--Ceeechhhh
Confidence 333333 477765 7889999999999999999999999999998 89999999999999999988 999999999
Q ss_pred eCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 202 TKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAE 235 (361)
Q Consensus 202 ~~i~~p~~i~~a~e~m~Aere~~~~A~q~~~~~~ 235 (361)
.+++|..++.+++|+ +|+|+|++++.+
T Consensus 171 ThltfGkEFt~AvE~-------KQVAQQEAErar 197 (271)
T KOG3083|consen 171 THLTFGKEFTEAVEA-------KQVAQQEAERAR 197 (271)
T ss_pred hhhhhhHHHHHHHHH-------HHHHHHHHHHHH
Confidence 999999999999997 556777766654
No 20
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.81 E-value=3.9e-19 Score=160.99 Aligned_cols=162 Identities=16% Similarity=0.239 Sum_probs=128.5
Q ss_pred hhhceEEEecCCeEEEEEeCCeeceeeeCCeeeEEc----Cce---------------eEEEEEEeeeeeeccc--cc--
Q 018056 49 SSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKL----PLI---------------THYEPVQVTLQTDQVT--DI-- 105 (361)
Q Consensus 49 ~l~~~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~----P~i---------------~~v~~vd~r~q~~~~~--~~-- 105 (361)
+.++|.++|++||.+|++++|++.++. +||.|+.+ |++ ..|..++.+.+..... ..
T Consensus 11 i~~~s~~iV~e~~~av~~~~Gk~~~~~-~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 89 (207)
T cd03408 11 IKNGSQLIVREGQAAVFVNEGKVADVF-APGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPV 89 (207)
T ss_pred cccCCEEEEcCCcEEEEEECCEEEEEe-cCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCe
Confidence 456789999999999999999999994 76666554 444 3477787776543211 11
Q ss_pred --cccccCceEE---EEEEEEEeccchhHHHHHHHhh----cCccchHHHHHHHHHHHHHHHhccCchHHHhhhc-HHHH
Q 018056 106 --PCGTKGGVMI---NFEKIEVVNRLRKEYVYETLRD----YGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDV-FDQI 175 (361)
Q Consensus 106 --~~~Tkd~v~v---~~v~~rI~dp~~~~~~y~~~~~----~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~-R~~i 175 (361)
...|+|++.+ ..+.|+|.||.+ +|..+.. |..+.....|.+.+++++|+++|++++++++..+ |++|
T Consensus 90 ~~~~~~~~~v~v~v~~~~~~kI~Dp~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i 166 (207)
T cd03408 90 FGRDSEFGGVPLRAFGTYSLKVTDPVL---FVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDEL 166 (207)
T ss_pred eeeCCccceEEEEeeEEEEEEEcCHHH---HHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHH
Confidence 2356777766 356899999986 6666531 2223567899999999999999999999999854 9999
Q ss_pred HHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHHH
Q 018056 176 DEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQ 216 (361)
Q Consensus 176 ~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e~ 216 (361)
++.+++.+++.++.| ||+|.+|.|++|++|+++++++.+
T Consensus 167 ~~~v~~~l~~~~~~~--Gi~i~~v~I~~i~~p~e~~~ai~~ 205 (207)
T cd03408 167 SKAVREALAPWFASF--GLELVSVYIESISYPDEVQKLIDK 205 (207)
T ss_pred HHHHHHHHHHHHHhc--CcEEEEEEEEeecCCHHHHHHHHh
Confidence 999999999999999 999999999999999999988874
No 21
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=5.8e-16 Score=155.07 Aligned_cols=195 Identities=13% Similarity=0.160 Sum_probs=137.4
Q ss_pred EEEecCCeEEEEEe--C------CeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEEE---EEEEEE
Q 018056 54 LHQIPEGHVGVYWR--G------GALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMIN---FEKIEV 122 (361)
Q Consensus 54 ~~~V~~ge~gVv~r--~------Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v~---~v~~rI 122 (361)
|.+.++++..|++. | |.-.++ +.+|+||++|++++..++|++....++..-.+.|+||+++. +...+|
T Consensus 35 y~~a~~~~aLI~~g~~~g~~~~~g~~~~v-V~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i 113 (548)
T COG2268 35 YIIARPNEALIRTGSKLGSKDEAGGGQKV-VRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKI 113 (548)
T ss_pred EEecCCCceEEEeccccCCcccccCCccE-EecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEe
Confidence 44445555555543 2 333345 69999999999999999998776665554457899998662 223344
Q ss_pred eccchhHHHHHHHhhcCcc----chHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEE
Q 018056 123 VNRLRKEYVYETLRDYGVQ----YDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIIS 198 (361)
Q Consensus 123 ~dp~~~~~~y~~~~~~~~~----~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~ 198 (361)
.+... .+.+....|+.. +....+...+.+++|.+++++|+.++.. +|..|...+.+.+...+++. |+.|++
T Consensus 114 ~~~~~--dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~e-dR~~F~~~V~~~v~~dL~k~--Gl~l~s 188 (548)
T COG2268 114 GDTFQ--DIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNE-DRLGFAQVVQEVVGDDLSKM--GLVLDS 188 (548)
T ss_pred cCCHH--HHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhh-HHhhHHHHHHHHHHHHHHhc--Ceeeee
Confidence 43322 122222223333 5678889999999999999999999997 89999999999999999998 999999
Q ss_pred EEEeCCCCC-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 199 VRVTKPTIP-------DRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKIL 259 (361)
Q Consensus 199 V~I~~i~~p-------~~i~~a~e~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~ 259 (361)
+.|.++.-+ ..+.++.-+-+ +..-.+++.+...|+++...+.++++.++++..+.+
T Consensus 189 ~~I~~i~d~~~~~~d~~~yLda~G~r~-----i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~~e~~ 251 (548)
T COG2268 189 LAINDINDTSKENQDPNNYLDALGRRR-----IAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELE 251 (548)
T ss_pred eeecccccccccccChhhhhhhcChHH-----HHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHhhh
Confidence 999999999 67777665311 111233566677777777667777677666665554
No 22
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.64 E-value=1.7e-15 Score=126.47 Aligned_cols=117 Identities=17% Similarity=0.232 Sum_probs=97.7
Q ss_pred EEeeeeeeccccccccccCceEE---EEEEEEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhh
Q 018056 93 VQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYI 169 (361)
Q Consensus 93 vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~ 169 (361)
+|+|+++.+. .+.+.|+|++.+ .++.|+|.+ .++.++|.. |+.+..+..|.+.+++++|+++|+|+++++++
T Consensus 3 ~~~r~~~~~~-~~~v~T~D~~~v~vd~~v~y~V~~-~~~~~~~~~---~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~ 77 (124)
T cd03400 3 YSTRLQEVDE-KIDVLSKEGLSINADVSVQYRINP-NKAAAVHSK---LGTDYARKIVRPTFRSLVREVTGRYTAEQIYS 77 (124)
T ss_pred ccceeeeccc-ceEEECCCCCEEEEEEEEEEEECh-hhHHHHHHH---hCcchhheeechhHHHHHHHHhcCCCHHHHhh
Confidence 5677775433 456889999766 467999954 444445554 35556677899999999999999999999997
Q ss_pred hcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHHH
Q 018056 170 DVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQ 216 (361)
Q Consensus 170 ~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e~ 216 (361)
++|++|++.+++.+++.+++| ||+|.+|.|++++||+++.++++.
T Consensus 78 ~~R~~i~~~i~~~l~~~~~~~--Gi~v~~v~i~~i~~P~~v~~aI~~ 122 (124)
T cd03400 78 TKRKEIESAIKKELIEEFVGD--GLILEEVLLRNIKLPDQIADAIEA 122 (124)
T ss_pred hhHHHHHHHHHHHHHHHhccC--CeEEEEEEEecccCCHHHHHHHHh
Confidence 689999999999999999999 999999999999999999999884
No 23
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.57 E-value=3.1e-13 Score=126.84 Aligned_cols=196 Identities=14% Similarity=0.089 Sum_probs=137.7
Q ss_pred EEEecCCeEEEEEeCCeeceeeeCCeeeEEcCceeEEEEEEeeeeeeccccccccccCceEEE---E--EEEEEeccchh
Q 018056 54 LHQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMIN---F--EKIEVVNRLRK 128 (361)
Q Consensus 54 ~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v~---~--v~~rI~dp~~~ 128 (361)
|++.++++..++..+|.-... +-+| .|++|| +++..+|++..+++.....+.|+.+|+++ + +..++.|+..
T Consensus 2 f~~~~~~~~l~itg~g~~~~~-lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e- 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIEDIK-LVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE- 77 (428)
T ss_pred CccCCccceEEeecccccCce-eccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH-
Confidence 566788999999988864444 4555 477788 99999999877776655557899998653 2 2333334332
Q ss_pred HHHHHHHhh--cCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCC
Q 018056 129 EYVYETLRD--YGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTI 206 (361)
Q Consensus 129 ~~~y~~~~~--~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~ 206 (361)
..+|..... -+......++...+.+..|.++|+||++++|. +|.+|...+++..+.++.++ ||.|.+..|+|+..
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyK-drk~F~k~Vfeva~~dl~~m--Gi~I~s~tiKdl~D 154 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYK-DRKEFKKEVFEVAQLDLGQM--GIVIYSATIKDLVD 154 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHh-hHHHHHHHHHHHhhhhhhhc--ceEEEEeEhhhhhc
Confidence 122322111 13345677888899999999999999999997 89999999999999999998 99999999999988
Q ss_pred Ch--hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018056 207 PD--RIRRNFEQME-EERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQ 262 (361)
Q Consensus 207 p~--~i~~a~e~m~-Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Aea 262 (361)
.+ ++...+.+.+ ++ ++.++.++.+||+++.-+..++++.+..-++..++.
T Consensus 155 ~~g~~YlssLGka~tae------v~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aet 207 (428)
T KOG2668|consen 155 VPGHEYLSSLGKATTAE------VARDARIGVAEAKREAGIKEATGLTEQNAAKIDAET 207 (428)
T ss_pred ccchHHHHHhhhHHHHH------HHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhh
Confidence 77 5777666321 22 233556666666666655555555555444444443
No 24
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.55 E-value=2.8e-14 Score=119.82 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=95.5
Q ss_pred EEeeeeeeccccccccccCceEE---EEEEEEEeccchhHHHHHHHhhcC---ccchHHHHHHHHHHHHHHHhccCchHH
Q 018056 93 VQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKEYVYETLRDYG---VQYDKTWIYDKIHHEINQFCSSHSLQQ 166 (361)
Q Consensus 93 vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~~y~~~~~~~---~~~~~~~I~~~v~~~lR~vi~~~tl~e 166 (361)
+|+|++..++....+.|+|++.+ .++.|+|.+|.+ ++...+.+|. .+.....+.+.+++++|+++|+|++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e 79 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEE--AIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE 79 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 35666666666666889999866 577999998875 2222222222 356788999999999999999999999
Q ss_pred HhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHH
Q 018056 167 VYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNF 214 (361)
Q Consensus 167 il~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~ 214 (361)
+++ +|++|..+|.+.+++.+++| ||+|.+|.|++|++|+.+.+.+
T Consensus 80 l~~-~R~~i~~~i~~~v~~~~~~~--Gi~i~~v~I~~i~~~~~~~~~~ 124 (128)
T cd03399 80 IYE-DRDKFAEQVQEVVAPDLNKM--GLELDSFTIKDITDTDGYLNNL 124 (128)
T ss_pred HHH-hHHHHHHHHHHHHHHHHHHC--CCEEEEEeeEEecCCCCCHHHc
Confidence 997 89999999999999999999 9999999999999999866544
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.27 E-value=8e-11 Score=96.16 Aligned_cols=107 Identities=21% Similarity=0.346 Sum_probs=89.1
Q ss_pred ccccccccccCceEE---EEEEEEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHH
Q 018056 101 QVTDIPCGTKGGVMI---NFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDE 177 (361)
Q Consensus 101 ~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~ 177 (361)
....+.+.|+|++.+ ..+.|+|.++.. ++|... +..+ ...+.+.+.+++|+++++++++++.+ +|.+|.+
T Consensus 10 ~~~~~~~~t~d~~~i~~~~~~~~~v~~~~~--~~~~~~---~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~ 82 (121)
T cd02106 10 DVPPQEVLTKDNVPVRVDAVVQYRVVDPVK--ALYNVR---DPED-EEALRQLAQSALRSVIGKMTLDELLE-DRDEIAA 82 (121)
T ss_pred cCCCceEEecCCCEEEEEEEEEEEEeCHHH--HHHhcC---CccH-HHHHHHHHHHHHHHHHccccHHHHHh-hHHHHHH
Confidence 344456789999876 466899988763 344221 2222 68999999999999999999999986 8999999
Q ss_pred HHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHHH
Q 018056 178 KMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQ 216 (361)
Q Consensus 178 ~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e~ 216 (361)
.+++.+...++.| |++|.+|.|.++++|+++.+++++
T Consensus 83 ~v~~~l~~~~~~~--Gi~i~~v~i~~i~~~~~~~~ai~~ 119 (121)
T cd02106 83 EVREALQEDLDKY--GIEVVDVRIKDIDPPEEVQEAMED 119 (121)
T ss_pred HHHHHHHHHHHhc--CCEEEEEEEEecCCCHHHHHHHHh
Confidence 9999999999999 999999999999999999998885
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.07 E-value=1.3e-08 Score=92.59 Aligned_cols=159 Identities=18% Similarity=0.289 Sum_probs=115.4
Q ss_pred hceEEEecCCeEEEEEeCCeeceeeeCCeeeEE----c---------------CceeEEEEEEeeeeeecc----ccccc
Q 018056 51 LAILHQIPEGHVGVYWRGGALLETITHPGFHLK----L---------------PLITHYEPVQVTLQTDQV----TDIPC 107 (361)
Q Consensus 51 ~~~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~----~---------------P~i~~v~~vd~r~q~~~~----~~~~~ 107 (361)
..|-.+|++||.+|..+-|++... .+||-|-. + ||-..|+.++++.....- ..++.
T Consensus 13 ~GS~LiV~egQ~Avfv~~G~i~d~-~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~ 91 (211)
T PF13421_consen 13 NGSQLIVREGQCAVFVNDGKIADV-FGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPY 91 (211)
T ss_pred CCCEEEECCCCEEEEEECCEEEEE-ecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeee
Confidence 356779999999999999999885 79999976 2 444456666554322100 11112
Q ss_pred cccC--ceEE---EEEEEEEeccchhHHHHHHHhh----cCccchHHHHHHHHHHHHHHHhcc--CchHHHhhhcHHHHH
Q 018056 108 GTKG--GVMI---NFEKIEVVNRLRKEYVYETLRD----YGVQYDKTWIYDKIHHEINQFCSS--HSLQQVYIDVFDQID 176 (361)
Q Consensus 108 ~Tkd--~v~v---~~v~~rI~dp~~~~~~y~~~~~----~~~~~~~~~I~~~v~~~lR~vi~~--~tl~eil~~~R~~i~ 176 (361)
.+.+ .|.+ ..-.+||.||.. |++.+.. |+.++....+++.+...+-+.++. .++.|+-+ +-.+|+
T Consensus 92 ~D~~~~~v~lra~G~ys~rI~Dp~~---F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a-~~~eis 167 (211)
T PF13421_consen 92 RDPEYGPVRLRAFGTYSFRIVDPVL---FIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPA-HLDEIS 167 (211)
T ss_pred cCCCCCcEEEEEEEEEEEEEeCHHH---HHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHH
Confidence 2222 2334 123678999976 6766531 334455667777777777777765 68888876 889999
Q ss_pred HHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHHH
Q 018056 177 EKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQ 216 (361)
Q Consensus 177 ~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e~ 216 (361)
+.+++.|+..++.+ ||+|+++.|.+|.+|+++++.+++
T Consensus 168 ~~~~~~l~~~~~~~--Gi~l~~f~I~~i~~pee~~~~i~~ 205 (211)
T PF13421_consen 168 EALKEKLNPEFERY--GIELVDFGIESISFPEEVQKAIDK 205 (211)
T ss_pred HHHHHHHHHHHHhc--CcEEEEEEEEeecCCHHHHHHHHH
Confidence 99999999999988 999999999999999999998885
No 27
>PTZ00491 major vault protein; Provisional
Probab=98.52 E-value=5.6e-05 Score=79.93 Aligned_cols=146 Identities=10% Similarity=0.020 Sum_probs=90.8
Q ss_pred EEEecCCeEEEEEeC--CeeceeeeCCeeeEEcCceeEEEEEEeeeee---------ecc--------ccccccccCceE
Q 018056 54 LHQIPEGHVGVYWRG--GALLETITHPGFHLKLPLITHYEPVQVTLQT---------DQV--------TDIPCGTKGGVM 114 (361)
Q Consensus 54 ~~~V~~ge~gVv~r~--Gk~~~~~l~pGlhf~~P~i~~v~~vd~r~q~---------~~~--------~~~~~~Tkd~v~ 114 (361)
.|.||-+...=|+.+ ++ .+++.+|-+.+.-|- +....++++--+ .-. ..+.+-|+|...
T Consensus 464 ~~~vphn~avqvydyk~~~-~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhAr 541 (850)
T PTZ00491 464 TYKVPHNAAVQLYDYKTKK-SRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHAR 541 (850)
T ss_pred EEEcCCCcEEEEEEcccCc-eEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccce
Confidence 456666666656543 33 577789999999886 555555442110 000 112356888754
Q ss_pred EE---EEEEEEe----ccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHh--
Q 018056 115 IN---FEKIEVV----NRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQV-- 185 (361)
Q Consensus 115 v~---~v~~rI~----dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~-- 185 (361)
+. .-.|.+. ||..+..+ |++.++-..+-..+.+.+|..+++.++++.....-.-|...+....++
T Consensus 542 L~l~LsYnW~F~v~~~d~~~~~k~------Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~ 615 (850)
T PTZ00491 542 LALQLSYNWYFDVTDGNPEDAQKC------FSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETG 615 (850)
T ss_pred EEEEEEEEEEEecCCCChhhHhhe------eccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCC
Confidence 42 1256654 33322222 588887777888899999999999999999863333344444432222
Q ss_pred ------hcccCCCCeEEEEEEEeCCCCChh
Q 018056 186 ------DCTRYAPGIEIISVRVTKPTIPDR 209 (361)
Q Consensus 186 ------~l~~~~~GI~I~~V~I~~i~~p~~ 209 (361)
.+... |+.|++|.|+.+.|-+.
T Consensus 616 ~~r~~l~F~~N--~lvit~VDvqsvEpvD~ 643 (850)
T PTZ00491 616 EVRDSLRFPAN--NLVITNVDVQSVEPVDE 643 (850)
T ss_pred ccccceEEccC--CeEEEEEeeeeeeecCH
Confidence 12343 99999999999999763
No 28
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.20 E-value=5.7e-05 Score=70.08 Aligned_cols=159 Identities=12% Similarity=0.164 Sum_probs=110.2
Q ss_pred ceEEEecCCeEEEEEeCCeeceeeeCCeeeEE-------------------cCceeEEEEEEeeeeee----cccccccc
Q 018056 52 AILHQIPEGHVGVYWRGGALLETITHPGFHLK-------------------LPLITHYEPVQVTLQTD----QVTDIPCG 108 (361)
Q Consensus 52 ~~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~-------------------~P~i~~v~~vd~r~q~~----~~~~~~~~ 108 (361)
.|..+|.+++-++...-|++....-++|.+=+ -|+-+.|+.++++-++- ....+...
T Consensus 39 Gs~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin~~ 118 (345)
T COG4260 39 GSILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPINYF 118 (345)
T ss_pred CcEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCeecc
Confidence 35678999999999999998877545774322 24445565555443220 01112222
Q ss_pred c-cCc--eEE---EEEEEEEeccchhHHHHHHHh----hcCccchHHHHHHHHHHHHHHHhccCc--hHHHhhhcHHHHH
Q 018056 109 T-KGG--VMI---NFEKIEVVNRLRKEYVYETLR----DYGVQYDKTWIYDKIHHEINQFCSSHS--LQQVYIDVFDQID 176 (361)
Q Consensus 109 T-kd~--v~v---~~v~~rI~dp~~~~~~y~~~~----~~~~~~~~~~I~~~v~~~lR~vi~~~t--l~eil~~~R~~i~ 176 (361)
+ .++ +.+ .+-.|+|+||.. +++.+- .|.+++.++.+-+.+..+|...++++- +..+- .+--+|+
T Consensus 119 dn~~~g~l~lRa~Gtys~kvtDpi~---fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~lt-an~~els 194 (345)
T COG4260 119 DNFYNGELFLRAHGTYSIKVTDPIL---FIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLT-ANQMELS 194 (345)
T ss_pred cccccceeEEeecceEEEEecCHHH---HHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhh-hhHHHHH
Confidence 2 222 233 134688999986 666653 145566677777888888888887763 33443 3778899
Q ss_pred HHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHHH
Q 018056 177 EKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQ 216 (361)
Q Consensus 177 ~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e~ 216 (361)
+.+++.|.+.+..+ |..|++|.|-.|++|++.++.+++
T Consensus 195 k~m~e~Ld~q~~q~--Gm~v~sfqvaSisypde~Q~lin~ 232 (345)
T COG4260 195 KYMAEVLDEQWTQY--GMAVDSFQVASISYPDESQALINM 232 (345)
T ss_pred HHHHHHHhHHHHhh--CceEeeEEEEEecCcHHHHHHHHh
Confidence 99999999999998 999999999999999999998873
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.15 E-value=0.0041 Score=57.57 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=67.3
Q ss_pred HHHHHHHhhcccCCCCeEEEEEEEeCCCCCh-hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 178 KMKDALQVDCTRYAPGIEIISVRVTKPTIPD-RIRRNFEQ-MEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANV 255 (361)
Q Consensus 178 ~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~-~i~~a~e~-m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~ 255 (361)
.|.+.+.+.+... +.=..+.|.++.+.+ .+-+.+.+ |.. +..++-+++++...++|++++++
T Consensus 120 ~i~~~i~~~l~~~---l~~~Gi~i~~v~i~~i~~p~~i~~ai~~-------------~~~ae~~~~a~~~~ae~~~~a~~ 183 (242)
T cd03405 120 ELMEEIRRAVAEE---AKELGIEVVDVRIKRIDLPEEVSESVYR-------------RMRAERERIAAEFRAEGEEEAER 183 (242)
T ss_pred HHHHHHHHHHHHH---HHccCcEEEEEEEEeccCCHHHHHHHHH-------------HHHHHHHHHHHHHHhhhHHHHHH
Confidence 4555555555552 333457777776643 22223332 111 11222233334456777777777
Q ss_pred HHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHhccccCcHHHHH-HHHHHHHh
Q 018056 256 SKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYLE-LKFIEAIA 321 (361)
Q Consensus 256 ~~a~Aea~~~~~ea~~~~ae~~a~a~~~~~~~~Aea~~~~~~~~a~a~~~~l~~~~l~-~~~~e~~~ 321 (361)
.+++|+ +++.++.|++++++... ++++||+.++.+.++ | .-+|+++. +++|+++.
T Consensus 184 ~~aea~-----~~~~~~~Aea~a~a~~~--~a~gea~a~~~~~~a--~--~~~p~~~~~~~~l~~~~ 239 (242)
T cd03405 184 IRADAD-----RERTVILAEAYREAQEI--RGEGDAEAARIYAEA--Y--GKDPEFYAFYRSLEAYR 239 (242)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHH--H--cCCHHHHHHHHHHHHHH
Confidence 766664 56777888888888777 667777777777653 3 34677775 55666653
No 30
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=97.05 E-value=0.0099 Score=55.76 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHhccccCcHHHH-HHHHHHHHh
Q 018056 244 MAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYL-ELKFIEAIA 321 (361)
Q Consensus 244 i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~~~~~Aea~~~~~~~~a~a~~~~l~~~~l-~~~~~e~~~ 321 (361)
+..++++++..+.+|+++| +..+..|+|++++... ++++||+.++.+.+ +|. .+|++. .+.++|++.
T Consensus 169 ~~~ae~~~~~~~~~a~~~a-----~~~~~~Aea~~~~~~~--~a~g~a~~~~~~~~--ay~--~~p~~~~~~~~le~~~ 236 (261)
T TIGR01933 169 INEAEAYANEVVPKARGDA-----QRIIEEARGYKERRIN--RAKGDVARFTKLLA--EYK--KAPDVTRERLYLETME 236 (261)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH--HhhhhHHHHHHHHH--HHH--hChHHHHHHHHHHHHH
Confidence 3444455554444554433 3444555555555444 55555555555544 343 345544 445666665
No 31
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=96.81 E-value=0.008 Score=58.24 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHhccccCcHHHHH-HHHHHHHh
Q 018056 243 KMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYLE-LKFIEAIA 321 (361)
Q Consensus 243 ~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~~~~~Aea~~~~~~~~a~a~~~~l~~~~l~-~~~~e~~~ 321 (361)
...+++|+++++...++|+ +++.++.+++++++... ++++||++++.+.++ | .-+|+++. ++++|++.
T Consensus 226 ~~~r~ege~~a~~i~a~A~-----~e~~~~~aeA~a~a~~~--~Aegea~a~~~~~~a--~--~~~p~~~~~~~~le~~~ 294 (317)
T TIGR01932 226 RMHRSQGEEKAEEILGKAE-----YEVRKILSEAYRTARII--KGEGDAEAAKIYSDA--Y--GKDPEFYSFWRSLEAYE 294 (317)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHH--H--ccCHHHHHHHHHHHHHH
Confidence 3445677777776666654 46667777776666555 666777777777654 3 34577664 66777776
No 32
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=96.63 E-value=0.022 Score=55.53 Aligned_cols=90 Identities=19% Similarity=0.286 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHhccccCcHHHH-HH
Q 018056 236 KEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANKLMLTPEYL-EL 314 (361)
Q Consensus 236 ~eAe~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~~~~~Aea~~~~~~~~a~a~~~~l~~~~l-~~ 314 (361)
+|-++.+...++||+++++..+++|+ +++.++.|++++++... ++++||++++.+.++ | .-+|++. .+
T Consensus 229 Aere~~a~~~~aege~~a~~~~a~A~-----~e~~~~~AeA~~~a~i~--~aegeA~a~~~~~~a--~--~~~p~~~~~~ 297 (334)
T PRK11029 229 AEREAVARRHRSQGQEEAEKLRATAD-----YEVTRTLAEAERQGRIM--RGEGDAEAAKLFADA--F--SQDPDFYAFI 297 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHH--H--hcCHHHHHHH
Confidence 33444445667889988888887774 57777778887766666 667777777777764 3 3445544 45
Q ss_pred HHHHHHhccCeEEEcCCCchhHHhhh
Q 018056 315 KFIEAIADNTKIFFGEKVPSMILDQR 340 (361)
Q Consensus 315 ~~~e~~~~~~~ii~~~~~~~~~~~~~ 340 (361)
++|+++.. + ++++...++++.+
T Consensus 298 ~~lea~~~---~-~~~~~~~~vl~~~ 319 (334)
T PRK11029 298 RSLRAYEN---S-FSGNQDVMVLSPD 319 (334)
T ss_pred HHHHHHHH---H-hcCCCcEEEECCC
Confidence 56776652 2 3444444555544
No 33
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.28 E-value=0.04 Score=51.75 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 233 VAEKEAETSKKMAISEAEKNANVSKILME 261 (361)
Q Consensus 233 ~~~~eAe~~~~i~~aeAe~~a~~~~a~Ae 261 (361)
+.+++++.++.+..|+|++++.+++++|+
T Consensus 207 ~~~A~~ea~~~~~~A~a~~~~~~~~ae~~ 235 (266)
T cd03404 207 VPKARGEAARIIQEAEAYKEEVIAEAQGE 235 (266)
T ss_pred HHHhHhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444555555555555555544
No 34
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=95.63 E-value=0.29 Score=42.55 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhccCchHHHhh-hcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCC
Q 018056 148 YDKIHHEINQFCSSHSLQQVYI-DVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPT 205 (361)
Q Consensus 148 ~~~v~~~lR~vi~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~ 205 (361)
.+.+++++...+++.|.+++-+ .+++++..++++.++..+.. |..|.+|.+.++.
T Consensus 102 ~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~---g~~V~dV~fT~fi 157 (159)
T COG1580 102 KPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKE---GQVVKDVLFTNFI 157 (159)
T ss_pred hHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhc---CCeeEEEeeehhh
Confidence 3678999999999999999998 67999999999999999998 4489999888764
No 35
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=95.58 E-value=0.56 Score=43.97 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=60.0
Q ss_pred cccCceEEEEEEEEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhc
Q 018056 108 GTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDC 187 (361)
Q Consensus 108 ~Tkd~v~v~~v~~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l 187 (361)
..+||+.+. +.-||+=..+ +-+.+ |....+..+...-++.+..+=+.-+-.+++. +-+.|++.+.+. -+
T Consensus 135 VAkdGIql~-~kArVTVRaN---i~rLV---GGAgEeTIiARVGEgIVttiGSa~~hk~VLE-nPd~ISk~VL~k---gL 203 (316)
T PF12127_consen 135 VAKDGIQLK-VKARVTVRAN---IDRLV---GGAGEETIIARVGEGIVTTIGSAESHKEVLE-NPDSISKTVLEK---GL 203 (316)
T ss_pred hhcCCeEEE-EEEEEEEEec---HHHhc---cCCCcHHHHHHHccceeeeeccchhHHHHhc-CHHHHHHHHHhh---CC
Confidence 467887652 2334432122 22222 4455566777666666655545556677775 778888777554 45
Q ss_pred ccCCCCeEEEEEEEeCCCCChhHHHHHH
Q 018056 188 TRYAPGIEIISVRVTKPTIPDRIRRNFE 215 (361)
Q Consensus 188 ~~~~~GI~I~~V~I~~i~~p~~i~~a~e 215 (361)
+. +.-.+|.++.|-|++.-..+-.-++
T Consensus 204 Da-gTAFeIlSIDIaDidVG~NIGA~Lq 230 (316)
T PF12127_consen 204 DA-GTAFEILSIDIADIDVGENIGAKLQ 230 (316)
T ss_pred Cc-CceeEEEEeeeeccccchhhchhhh
Confidence 54 4579999999999999877655443
No 36
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=95.34 E-value=0.09 Score=49.41 Aligned_cols=88 Identities=14% Similarity=0.009 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHhcc----ccCcHHH--
Q 018056 238 AETSKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAEANK----LMLTPEY-- 311 (361)
Q Consensus 238 Ae~~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~a~a~~~~~~~~Aea~~~~~~~~a~a~~----~~l~~~~-- 311 (361)
.++++.+..|+|++.+.+.+|+|+ +++.+++|+|+|++... .++++++.+..+.+ +|. ...+.-+
T Consensus 157 ~~~~a~~~~Aea~~~~~i~~A~~e-----a~a~~~~Aeg~a~a~~~--~A~g~~~~~~~~~~--~~~~~~~~~~~~~~~~ 227 (262)
T cd03407 157 RQRVAAVHKAEAEKIKDIKAAEAD-----AEAKRLQGVGAAEQRQA--IADGLRESILSLAD--AVPGMTAKDVMDLLLV 227 (262)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHH--HhhcccccchHHHHHH
Confidence 344444555666666666655553 45666667776666555 33334433333332 221 1222222
Q ss_pred -HHHHHHHHHhc--cCeEEEcCCCch
Q 018056 312 -LELKFIEAIAD--NTKIFFGEKVPS 334 (361)
Q Consensus 312 -l~~~~~e~~~~--~~~ii~~~~~~~ 334 (361)
+++..++.+.+ |+.+++|.+...
T Consensus 228 ~~y~e~~~~~~~~~~kviv~p~~~~~ 253 (262)
T cd03407 228 NQYFDTLKAYGRSSSTVVFRPHGPGG 253 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCcc
Confidence 33334555553 444666665443
No 37
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=94.83 E-value=0.33 Score=48.80 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhh---cccCCCCeEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 018056 172 FDQIDEKMKDALQVD---CTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEA--ETSKKMAI 246 (361)
Q Consensus 172 R~~i~~~i~~~l~~~---l~~~~~GI~I~~V~I~~i~~p~~i~~a~e~m~Aere~~~~A~q~~~~~~~eA--e~~~~i~~ 246 (361)
+.++.+.+.+.++.. +.-- .|.|.++...+=. -+.+.+++..-+.++..+..|+.+++....+| +..+.+..
T Consensus 213 ~~~i~~~l~e~l~~y~~GI~V~--~V~I~di~pP~eV-~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~ 289 (419)
T PRK10930 213 RSDTQRELEETIRPYDMGITLL--DVNFQAARPPEEV-KAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEE 289 (419)
T ss_pred HHHHHHHHHHHHhhcCCCeEEE--EEEEeecCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666653 3333 7899999986422 25677766633333333456777776554444 44444555
Q ss_pred HHHHHHHHHHHHHHHh
Q 018056 247 SEAEKNANVSKILMEQ 262 (361)
Q Consensus 247 aeAe~~a~~~~a~Aea 262 (361)
|+|++++.+++|+++|
T Consensus 290 AeAyr~~~i~~AeGda 305 (419)
T PRK10930 290 ARAYKAQTILEAQGEV 305 (419)
T ss_pred HHHHHHHHHHHhhhhH
Confidence 7778888888877765
No 38
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=94.51 E-value=0.92 Score=43.90 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018056 236 KEAETSKKMAISEAEKNANVSKILMEQ 262 (361)
Q Consensus 236 ~eAe~~~~i~~aeAe~~a~~~~a~Aea 262 (361)
+||+..+....+||+++..+.+++|||
T Consensus 287 aeAe~~r~~klaEAnk~~~~~qaqAEA 313 (428)
T KOG2668|consen 287 AEAEVERETKLAEANKELYNKQAQAEA 313 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666666666665544
No 39
>PRK13665 hypothetical protein; Provisional
Probab=94.46 E-value=0.76 Score=42.90 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=54.9
Q ss_pred cccCceEEEEEEEEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhc
Q 018056 108 GTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDC 187 (361)
Q Consensus 108 ~Tkd~v~v~~v~~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l 187 (361)
..|||+.+.. .-||+=..+ +-+.+ |..-.++.|...-++.+..+=+.-+-.+++. +-+.|++.+. .+-|
T Consensus 140 VAkdGIql~~-kARVTVRaN---i~rLV---GGAgEeTIiARVGEgIVttIGSa~~hk~VLE-nPd~ISk~VL---~kGL 208 (316)
T PRK13665 140 VAKDGIEVKA-KARVTVRAN---IDRLV---GGAGEETIIARVGEGIVSTIGSSESHKEVLE-NPDSISKTVL---SKGL 208 (316)
T ss_pred hcccCeEEEE-EEEEEeehh---HHHHh---CCCcceeeEeeecCceeecccCcchHHHHhc-CHHHHHHHHH---hccC
Confidence 4678877632 334432111 22222 3233344444444444444334445667775 7788876554 4556
Q ss_pred ccCCCCeEEEEEEEeCCCCChhHHHHHH
Q 018056 188 TRYAPGIEIISVRVTKPTIPDRIRRNFE 215 (361)
Q Consensus 188 ~~~~~GI~I~~V~I~~i~~p~~i~~a~e 215 (361)
+. +.-.+|.++.|-|++....+-.-++
T Consensus 209 Da-gTAFeIlSIDIADvdVG~NIGA~Lq 235 (316)
T PRK13665 209 DA-GTAFEILSIDIADVDVGKNIGAKLQ 235 (316)
T ss_pred Cc-CceeEEEEEeeeccccchhhchhhh
Confidence 65 4579999999999999887655443
No 40
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=1.3 Score=42.13 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018056 236 KEAETSKKMAISEAEKNA 253 (361)
Q Consensus 236 ~eAe~~~~i~~aeAe~~a 253 (361)
++|++++.+..++|++++
T Consensus 207 a~g~~~a~~i~aea~~~a 224 (291)
T COG0330 207 AEGEAEAAIILAEAEAEA 224 (291)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 444444444445555444
No 41
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=91.87 E-value=0.65 Score=43.25 Aligned_cols=32 Identities=25% Similarity=0.129 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Q 018056 241 SKKMAISEAEKNANVSKILMEQKLMEKDSARKQEEID 277 (361)
Q Consensus 241 ~~~i~~aeAe~~a~~~~a~Aea~~~~~ea~~~~ae~~ 277 (361)
.+++..+||++.+++.+||++ +++.++.++|.
T Consensus 174 rAailesEger~~~InrAEGe-----k~s~iL~seg~ 205 (301)
T KOG2620|consen 174 RAAILESEGERIAQINRAEGE-----KESKILASEGI 205 (301)
T ss_pred HHHHhhhhhhhHHhhhhhcch-----hhhHHhhhHHH
Confidence 334555555555555555553 35555555553
No 42
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.92 E-value=3.2 Score=42.92 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q 018056 265 MEKDSARKQEEIDNQMYLARQRGLADADFYRVLKEAE 301 (361)
Q Consensus 265 ~~~ea~~~~ae~~a~a~~~~~~~~Aea~~~~~~~~a~ 301 (361)
+++++++..+.++|++.+. ++.|+|+..+.++++.
T Consensus 413 aea~a~~a~~~~~Aea~r~--kG~AEAea~r~lAEa~ 447 (548)
T COG2268 413 AEAEAQAAEIKAEAEAIRE--KGKAEAEAKRALAEAI 447 (548)
T ss_pred HHHHHHHHHHHhHHHHHHH--hhhhhHHHHHHHHHHH
Confidence 3445555555556777766 8888888888887764
No 43
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=88.39 E-value=1.5 Score=34.45 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhccCchHHHhh-hcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCC
Q 018056 149 DKIHHEINQFCSSHSLQQVYI-DVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKP 204 (361)
Q Consensus 149 ~~v~~~lR~vi~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i 204 (361)
+.+++.+...+++++.+++-+ .++..+.+++.+.+++.+.+. .|.+|.++++
T Consensus 44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~----~V~~V~ft~f 96 (99)
T PF03748_consen 44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG----KVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC----cEEEEEEEEE
Confidence 467888888999999999986 579999999999999999763 5888888765
No 44
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=88.09 E-value=1.9 Score=38.78 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=6.2
Q ss_pred ccCeEEEcCC
Q 018056 322 DNTKIFFGEK 331 (361)
Q Consensus 322 ~~~~ii~~~~ 331 (361)
++++++++++
T Consensus 206 ~~~~~~~~~~ 215 (215)
T cd03403 206 AASTVVFPAP 215 (215)
T ss_pred cCCeEEeeCC
Confidence 3677777653
No 45
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=84.80 E-value=29 Score=31.14 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 209 RIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSK 257 (361)
Q Consensus 209 ~i~~a~e~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~ 257 (361)
.+++-++++..+-.. .|++++....++|++++.....+|+++++...
T Consensus 4 ~~~~l~dki~~~~~e--eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~ 50 (198)
T PRK01558 4 EVKDLINKIKKDGLE--EAERLANEIILEAKEEAEEIIAKAEEEAKELK 50 (198)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444332 25556666666666665555555555544433
No 46
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=84.56 E-value=18 Score=32.84 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 207 PDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILME 261 (361)
Q Consensus 207 p~~i~~a~e~m~Aere~~~~A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~Ae 261 (361)
...+++-++++..+... .|++++.....+|++++.....+|+++++....+|+
T Consensus 7 ~~k~q~L~dki~~eiL~--eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~ 59 (207)
T PRK01005 7 QDKLKQICDALREETLK--PAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAE 59 (207)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555543333 255555555555555555444555544444444433
No 47
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=81.99 E-value=37 Score=30.72 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=5.9
Q ss_pred HHhhhcHHHHHHHHH
Q 018056 166 QVYIDVFDQIDEKMK 180 (361)
Q Consensus 166 eil~~~R~~i~~~i~ 180 (361)
.++...++.|...+.
T Consensus 75 ~~L~~R~~~I~~~L~ 89 (205)
T PRK06231 75 RFLNKRKELIEAEIN 89 (205)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344323334444443
No 48
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=81.67 E-value=2.3 Score=37.75 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=5.2
Q ss_pred EEEEEeCCCCC
Q 018056 197 ISVRVTKPTIP 207 (361)
Q Consensus 197 ~~V~I~~i~~p 207 (361)
..+.|.++.+.
T Consensus 136 ~Gi~i~~v~i~ 146 (196)
T cd03401 136 FGIILDDVSIT 146 (196)
T ss_pred CCeEEEEEEEE
Confidence 34455555443
No 49
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.76 E-value=41 Score=30.79 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHH
Q 018056 141 QYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFE 215 (361)
Q Consensus 141 ~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e 215 (361)
...+..|...-...+..+=++..-.+++. +-+.|++.+.+ +-++. ....+|.++.|-|++..+.+-.-++
T Consensus 165 ageetviarvgegivstigss~~h~~vle-npd~isktvl~---kgld~-gtafeilsidiadvdigkniga~lq 234 (328)
T COG4864 165 AGEETVIARVGEGIVSTIGSSDEHTKVLE-NPDSISKTVLE---KGLDS-GTAFEILSIDIADVDIGKNIGAKLQ 234 (328)
T ss_pred CCchhhhhhhccceeeccCCCcchhhHhc-CccHHHHHHHH---ccCCC-CceeEEEEeeeeccccccccccccc
Confidence 33445555444444433333344556664 66777776654 34444 3468999999999999987765443
No 50
>PLN03086 PRLI-interacting factor K; Provisional
Probab=79.29 E-value=7.9 Score=40.40 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=11.3
Q ss_pred ccCeEEEcCCCchhHHh
Q 018056 322 DNTKIFFGEKVPSMILD 338 (361)
Q Consensus 322 ~~~~ii~~~~~~~~~~~ 338 (361)
...||+||++.=.-+.+
T Consensus 90 ~GdKI~LPpSaL~~L~~ 106 (567)
T PLN03086 90 NGDKIKLPPSCFTELSD 106 (567)
T ss_pred CCCeEEcCHHHHHHHHh
Confidence 46889998875554433
No 51
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=78.35 E-value=5.8 Score=33.72 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhccCchHHHhh-hcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCC
Q 018056 149 DKIHHEINQFCSSHSLQQVYI-DVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKP 204 (361)
Q Consensus 149 ~~v~~~lR~vi~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i 204 (361)
+.+++.+-..+++.+.+|+-+ ++|+.+.+++.+.++..+.+ | .|.+|.++++
T Consensus 87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~---g-~V~~Vyft~f 139 (142)
T PRK07718 87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE---G-KVEKVYITSF 139 (142)
T ss_pred hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc---C-ceEEEEEEee
Confidence 357777778889999999986 35999999999999999886 5 6888888765
No 52
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=77.49 E-value=29 Score=31.18 Aligned_cols=29 Identities=28% Similarity=0.108 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 232 KVAEKEAETSKKMAISEAEKNANVSKILM 260 (361)
Q Consensus 232 ~~~~~eAe~~~~i~~aeAe~~a~~~~a~A 260 (361)
..+..+|+.++....++|++++.....+|
T Consensus 14 ~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA 42 (198)
T PRK01558 14 KDGLEEAERLANEIILEAKEEAEEIIAKA 42 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333
No 53
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=75.83 E-value=51 Score=28.38 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=7.5
Q ss_pred hHHHhhhcHHHHHHHHHH
Q 018056 164 LQQVYIDVFDQIDEKMKD 181 (361)
Q Consensus 164 l~eil~~~R~~i~~~i~~ 181 (361)
+..++...++.|...+.+
T Consensus 33 i~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14471 33 ILGAVKEREDSIKNALAS 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444233444444443
No 54
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=74.89 E-value=8.1 Score=34.36 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhccCchHHHhhh-cHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCC
Q 018056 148 YDKIHHEINQFCSSHSLQQVYID-VFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKP 204 (361)
Q Consensus 148 ~~~v~~~lR~vi~~~tl~eil~~-~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i 204 (361)
.+.+|+++-..+++.+.+|+.+. +++.+.+++.+.++..+.+ | .|.+|.++++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~---g-~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID---G-FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc---C-ceeEEEeEee
Confidence 35678888889999999999864 4899999999999999987 4 6888888775
No 55
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=74.57 E-value=57 Score=28.30 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=8.5
Q ss_pred hHHHhhhcHHHHHHHHHH
Q 018056 164 LQQVYIDVFDQIDEKMKD 181 (361)
Q Consensus 164 l~eil~~~R~~i~~~i~~ 181 (361)
+..++...++.|...+.+
T Consensus 35 i~~~le~R~~~I~~~l~~ 52 (167)
T PRK14475 35 LAGALDAYAAKIQAELDE 52 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445554334445555443
No 56
>PTZ00491 major vault protein; Provisional
Probab=74.36 E-value=26 Score=38.17 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=11.6
Q ss_pred cCeEEEcCCCchhHHhh
Q 018056 323 NTKIFFGEKVPSMILDQ 339 (361)
Q Consensus 323 ~~~ii~~~~~~~~~~~~ 339 (361)
...+|-++++|+.++.+
T Consensus 823 ~~~litDG~sPiNLf~t 839 (850)
T PTZ00491 823 KGYLVTDGKSPINLFNT 839 (850)
T ss_pred ceEEeecCCCchhHHhh
Confidence 45677788888766543
No 57
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=73.57 E-value=62 Score=28.26 Aligned_cols=19 Identities=5% Similarity=0.062 Sum_probs=8.4
Q ss_pred chHHHhhhcHHHHHHHHHH
Q 018056 163 SLQQVYIDVFDQIDEKMKD 181 (361)
Q Consensus 163 tl~eil~~~R~~i~~~i~~ 181 (361)
++..++...+..|...+.+
T Consensus 42 pi~~~l~~R~~~I~~~l~~ 60 (175)
T PRK14472 42 PILSALEEREKGIQSSIDR 60 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445554333444444443
No 58
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=73.39 E-value=8.9 Score=34.00 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCC
Q 018056 149 DKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPT 205 (361)
Q Consensus 149 ~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~ 205 (361)
+.+++.+...+++.|.+|+- ++.++.++|+++++..+.+- .|.+|.++++.
T Consensus 127 pqIRD~Ii~~LssKt~~eL~--Gk~~LKeEI~~rIN~iL~~G----kV~~VYFTeFv 177 (181)
T PRK06654 127 VRLKDIIREYFSQKTGQELK--NESQIKAEIKARINSILRNG----EIKDIAFTQID 177 (181)
T ss_pred HHHHHHHHHHHHhCCHHHHc--CHHHHHHHHHHHHHHhcCCC----ceEEEEEEEEE
Confidence 56788888899999999997 67999999999999999974 58888777653
No 59
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=72.17 E-value=66 Score=28.02 Aligned_cols=19 Identities=0% Similarity=0.092 Sum_probs=8.4
Q ss_pred chHHHhhhcHHHHHHHHHH
Q 018056 163 SLQQVYIDVFDQIDEKMKD 181 (361)
Q Consensus 163 tl~eil~~~R~~i~~~i~~ 181 (361)
++..++...++.|...+.+
T Consensus 40 pi~~~l~~R~~~I~~~l~~ 58 (173)
T PRK13460 40 VILKALDERASGVQNDINK 58 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555333444444433
No 60
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=72.10 E-value=11 Score=31.82 Aligned_cols=56 Identities=9% Similarity=0.034 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhccCchHHHhh-hcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCC
Q 018056 149 DKIHHEINQFCSSHSLQQVYI-DVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKP 204 (361)
Q Consensus 149 ~~v~~~lR~vi~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i 204 (361)
+.+|+.+-..+++.+.+++-+ ++|+.+.+++.+.++..+....-.-.|++|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 567888888999999999976 46999999999999999875211235888887765
No 61
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=71.03 E-value=66 Score=27.52 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=7.4
Q ss_pred chHHHhhhcHHHHHHHHH
Q 018056 163 SLQQVYIDVFDQIDEKMK 180 (361)
Q Consensus 163 tl~eil~~~R~~i~~~i~ 180 (361)
++.+++...+..|...+.
T Consensus 29 pi~~~l~~R~~~I~~~l~ 46 (159)
T PRK13461 29 KIKAVIDSRQSEIDNKIE 46 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555422333444433
No 62
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=70.86 E-value=11 Score=32.90 Aligned_cols=52 Identities=6% Similarity=0.079 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhccCchHHHhh-hcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCC
Q 018056 149 DKIHHEINQFCSSHSLQQVYI-DVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKP 204 (361)
Q Consensus 149 ~~v~~~lR~vi~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i 204 (361)
+.+++.+-..+++.+.+|+.+ .++..+.+++.+.++..+.+- .|.+|.++++
T Consensus 111 p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~----~V~~VlFt~F 163 (166)
T PRK12785 111 PRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA----QVNAVLFKEV 163 (166)
T ss_pred hHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC----ceeEEEEEee
Confidence 567777778889999999986 358999999999999998873 4888888765
No 63
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=70.58 E-value=78 Score=30.15 Aligned_cols=27 Identities=4% Similarity=0.206 Sum_probs=12.9
Q ss_pred HHHHHHHhhcccCCCCeEE--EEEEEeCCCCC
Q 018056 178 KMKDALQVDCTRYAPGIEI--ISVRVTKPTIP 207 (361)
Q Consensus 178 ~i~~~l~~~l~~~~~GI~I--~~V~I~~i~~p 207 (361)
.|.+.+.+.+..- +.- ..+.|.++.+-
T Consensus 125 ~I~~~I~~~l~e~---l~~y~~GI~I~dV~I~ 153 (280)
T cd03406 125 QIDENLKLALQKD---LTRMAPGLEIQAVRVT 153 (280)
T ss_pred HHHHHHHHHHHHH---HhccCCCcEEEEEEEE
Confidence 4455555555542 121 15666666553
No 64
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=70.29 E-value=74 Score=27.78 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=8.1
Q ss_pred chHHHhhhcHHHHHHHHH
Q 018056 163 SLQQVYIDVFDQIDEKMK 180 (361)
Q Consensus 163 tl~eil~~~R~~i~~~i~ 180 (361)
++.+++...++.|.+.+.
T Consensus 42 pi~~~l~~R~~~I~~~l~ 59 (173)
T PRK13453 42 PLKDVMDKRERDINRDID 59 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566533333444443
No 65
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=68.97 E-value=82 Score=27.75 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=12.6
Q ss_pred ccCchHHHhhhcHHHHHHHHHHH
Q 018056 160 SSHSLQQVYIDVFDQIDEKMKDA 182 (361)
Q Consensus 160 ~~~tl~eil~~~R~~i~~~i~~~ 182 (361)
+--++..++...+..|...+.+.
T Consensus 45 l~kPI~~~l~~R~~~I~~~l~~A 67 (184)
T CHL00019 45 GKGVLSDLLDNRKQTILNTIRNS 67 (184)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Confidence 34566777764444555555443
No 66
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=68.51 E-value=97 Score=31.52 Aligned_cols=18 Identities=6% Similarity=0.307 Sum_probs=8.0
Q ss_pred hHHHhhhcHHHHHHHHHH
Q 018056 164 LQQVYIDVFDQIDEKMKD 181 (361)
Q Consensus 164 l~eil~~~R~~i~~~i~~ 181 (361)
+..++...++.|.+.+.+
T Consensus 26 i~~~l~~R~~~I~~~L~e 43 (445)
T PRK13428 26 VRRLMAARQDTVRQQLAE 43 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344454334445544443
No 67
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=68.26 E-value=17 Score=29.82 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=46.2
Q ss_pred cCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHH-----HHHHh--hcccCCCCeEEEEEEEeCCCC
Q 018056 138 YGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMK-----DALQV--DCTRYAPGIEIISVRVTKPTI 206 (361)
Q Consensus 138 ~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~-----~~l~~--~l~~~~~GI~I~~V~I~~i~~ 206 (361)
|++.++-..+-..+.+.+|..+++.+.++.....-.-|...|. ..+.. .+..- |+.|++|.|+++.|
T Consensus 43 F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~~~~r~~~~F~~N--~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 43 FSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDENGEVRDGLRFPAN--NLVITSVDVQSVEP 116 (118)
T ss_dssp TSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---E--SS-EEETTT--TEEEEEEEEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCCCCccceeEEcCC--CeEEEEEeeeEecc
Confidence 6888887778888999999999999999998633222222221 11111 23443 99999999998875
No 68
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=67.61 E-value=1.1e+02 Score=28.61 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=9.1
Q ss_pred chHHHhhhcHHHHHHHHHHH
Q 018056 163 SLQQVYIDVFDQIDEKMKDA 182 (361)
Q Consensus 163 tl~eil~~~R~~i~~~i~~~ 182 (361)
++.+++...+..|...+.+.
T Consensus 29 Pi~~~l~eR~~~I~~~l~~A 48 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQDA 48 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455553334455544443
No 69
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=66.59 E-value=92 Score=27.46 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.6
Q ss_pred hHHHhh
Q 018056 164 LQQVYI 169 (361)
Q Consensus 164 l~eil~ 169 (361)
+..++.
T Consensus 56 I~~~l~ 61 (181)
T PRK13454 56 IGAVLA 61 (181)
T ss_pred HHHHHH
Confidence 334444
No 70
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=66.58 E-value=88 Score=27.21 Aligned_cols=19 Identities=16% Similarity=0.539 Sum_probs=8.1
Q ss_pred chHHHhhhcHHHHHHHHHH
Q 018056 163 SLQQVYIDVFDQIDEKMKD 181 (361)
Q Consensus 163 tl~eil~~~R~~i~~~i~~ 181 (361)
++.+++...++.|.+.+.+
T Consensus 46 Pi~~~l~~R~~~I~~~l~~ 64 (167)
T PRK08475 46 PLKNFYKSRINKISKRLEE 64 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445554233344444433
No 71
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=64.75 E-value=20 Score=31.12 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhccCchHHHhh-hcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCC
Q 018056 149 DKIHHEINQFCSSHSLQQVYI-DVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKP 204 (361)
Q Consensus 149 ~~v~~~lR~vi~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i 204 (361)
+.+|+.+-..+++.+.+|+.+ +++..+.+++.+.++..+......-.|.+|.++++
T Consensus 103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 457777788889999999975 35888999999999988865211236888887765
No 72
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=64.27 E-value=98 Score=26.95 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=9.9
Q ss_pred cCchHHHhhhcHHHHHHHHH
Q 018056 161 SHSLQQVYIDVFDQIDEKMK 180 (361)
Q Consensus 161 ~~tl~eil~~~R~~i~~~i~ 180 (361)
..++..++...+..|...+.
T Consensus 41 ~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 41 RGFLGKILEERREAILQALK 60 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34466666533444444443
No 73
>PRK09098 type III secretion system protein HrpB; Validated
Probab=62.59 E-value=73 Score=29.42 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 018056 213 NFEQMEEERTRVL-IAIEKQKVAEKEAET 240 (361)
Q Consensus 213 a~e~m~Aere~~~-~A~q~~~~~~~eAe~ 240 (361)
+|..+.+|++++. .|+++++...++|+.
T Consensus 33 ~~~~~~~~~~~ila~Ar~~A~~Il~~A~~ 61 (233)
T PRK09098 33 ALAAVHAERDAVLAAARARAERIVAEARA 61 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777752 344444443333333
No 74
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=62.07 E-value=1.3e+02 Score=27.76 Aligned_cols=20 Identities=15% Similarity=0.136 Sum_probs=10.5
Q ss_pred chHHHhhhcHHHHHHHHHHH
Q 018056 163 SLQQVYIDVFDQIDEKMKDA 182 (361)
Q Consensus 163 tl~eil~~~R~~i~~~i~~~ 182 (361)
++..++...+..|...+.+.
T Consensus 29 Pi~~~l~~R~~~I~~~l~~A 48 (246)
T TIGR03321 29 PILDAMDAREKKIAGELADA 48 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556653445566655544
No 75
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=62.03 E-value=1.1e+02 Score=26.55 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 018056 245 AISEAEKNANVSKI 258 (361)
Q Consensus 245 ~~aeAe~~a~~~~a 258 (361)
..|+.+++..+..+
T Consensus 66 ~~Ar~EA~~Ii~~A 79 (154)
T PRK06568 66 KKLETLRSQMIEES 79 (154)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444433333
No 76
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=60.75 E-value=1.2e+02 Score=26.70 Aligned_cols=18 Identities=6% Similarity=0.156 Sum_probs=8.6
Q ss_pred hHHHhhhcHHHHHHHHHH
Q 018056 164 LQQVYIDVFDQIDEKMKD 181 (361)
Q Consensus 164 l~eil~~~R~~i~~~i~~ 181 (361)
+..++...++.|...+.+
T Consensus 52 v~~~L~~R~~~I~~~l~~ 69 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEE 69 (184)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455565334445544443
No 77
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=59.14 E-value=1.2e+02 Score=26.13 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=8.0
Q ss_pred chHHHhhhcHHHHHHHHHH
Q 018056 163 SLQQVYIDVFDQIDEKMKD 181 (361)
Q Consensus 163 tl~eil~~~R~~i~~~i~~ 181 (361)
++..++...++.|...+.+
T Consensus 32 pi~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14473 32 PVLNLLNERTRRIEESLRD 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444554233344444433
No 78
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=58.51 E-value=1.4e+02 Score=26.92 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=8.9
Q ss_pred hHHHhhhcHHHHHHHHHHH
Q 018056 164 LQQVYIDVFDQIDEKMKDA 182 (361)
Q Consensus 164 l~eil~~~R~~i~~~i~~~ 182 (361)
+..++...++.|...+.+.
T Consensus 78 I~~vLe~R~~~I~~~L~~A 96 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQA 96 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344543344555555443
No 79
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=58.35 E-value=26 Score=30.60 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhccCchHHHhhh-cHHHHHHHHHHHHHhhcccCCCC-eEEEEEEEeCC
Q 018056 148 YDKIHHEINQFCSSHSLQQVYID-VFDQIDEKMKDALQVDCTRYAPG-IEIISVRVTKP 204 (361)
Q Consensus 148 ~~~v~~~lR~vi~~~tl~eil~~-~R~~i~~~i~~~l~~~l~~~~~G-I~I~~V~I~~i 204 (361)
.+.+|+.+-..+++.+.+++-+. +++.+.+++.++++..++.. +| -.|.+|.++++
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~-~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKV-TGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhh-cCCCceeEEeeeec
Confidence 35678888889999999999853 57888888887777766542 22 25788887765
No 80
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=57.19 E-value=1.4e+02 Score=26.29 Aligned_cols=34 Identities=24% Similarity=0.123 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 227 AIEKQKVAEKEAETSKKMAISEAEKNANVSKILM 260 (361)
Q Consensus 227 A~q~~~~~~~eAe~~~~i~~aeAe~~a~~~~a~A 260 (361)
|+++++...++|++++....++|+++++....++
T Consensus 14 a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~ 47 (188)
T PRK02292 14 ARARASEIRAEADEEAEEIIAEAEADAEEILEDR 47 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666555556665555444333
No 81
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=49.61 E-value=1.9e+02 Score=25.64 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=4.4
Q ss_pred ccCeEEEcC
Q 018056 322 DNTKIFFGE 330 (361)
Q Consensus 322 ~~~~ii~~~ 330 (361)
+...|++..
T Consensus 119 ~~~~v~~~~ 127 (185)
T PRK01194 119 EDCIIKVSE 127 (185)
T ss_pred CCeEEEEcH
Confidence 445555533
No 82
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=47.47 E-value=1.4e+02 Score=25.94 Aligned_cols=6 Identities=0% Similarity=0.241 Sum_probs=2.3
Q ss_pred cHHHHH
Q 018056 308 TPEYLE 313 (361)
Q Consensus 308 ~~~~l~ 313 (361)
+++++.
T Consensus 127 ~~~~i~ 132 (155)
T PRK06569 127 SEAIIK 132 (155)
T ss_pred HHHHHH
Confidence 333333
No 83
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=46.79 E-value=2.2e+02 Score=25.75 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018056 226 IAIEKQKVAEKEAETSKK 243 (361)
Q Consensus 226 ~A~q~~~~~~~eAe~~~~ 243 (361)
.|++++.....+|+.++.
T Consensus 35 eAk~~Ae~Ii~eA~~EAe 52 (207)
T PRK01005 35 NAKEQAKRIIAEAQEEAE 52 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 84
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=45.69 E-value=1.2e+02 Score=26.63 Aligned_cols=15 Identities=33% Similarity=0.209 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 018056 227 AIEKQKVAEKEAETS 241 (361)
Q Consensus 227 A~q~~~~~~~eAe~~ 241 (361)
|++++....++|+++
T Consensus 25 a~~~~~~i~~ea~~~ 39 (188)
T PRK02292 25 ADEEAEEIIAEAEAD 39 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 85
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=42.60 E-value=2.1e+02 Score=24.31 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=6.7
Q ss_pred hHHHhhhcHHHHHHHHH
Q 018056 164 LQQVYIDVFDQIDEKMK 180 (361)
Q Consensus 164 l~eil~~~R~~i~~~i~ 180 (361)
+..++...++.|...+.
T Consensus 27 i~~~l~~R~~~I~~~l~ 43 (159)
T PRK09173 27 IARSLDARADRIKNELA 43 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444422333444333
No 86
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=42.19 E-value=75 Score=26.17 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhceEEEecCCeEEEEEeCCeeceeeeCCeeeEEcC
Q 018056 24 AILAVFLTFIAIVSLILIPSSSSVKSSLAILHQIPEGHVGVYWRGGALLETITHPGFHLKLP 85 (361)
Q Consensus 24 ~~~~~~l~~~ai~~~~~~p~~~~~~~l~~~~~~V~~ge~gVv~r~Gk~~~~~l~pGlhf~~P 85 (361)
.-|..+|.+++++.+++ ..+++.....-..+-.||+. +-+|+-..+|
T Consensus 51 i~lavvL~~fg~Lli~l------g~fl~~~~~~ag~~~~gv~f---------~V~G~L~FiP 97 (124)
T KOG4753|consen 51 IALAVVLLVFGLLLIGL------GFFLAGGRVEAGDRSQGVFF---------FVLGILLFIP 97 (124)
T ss_pred HHHHHHHHHHHHHHHHH------HHHheecceeeCCCcceEEE---------ehhhhHhccc
Confidence 44566666655555544 12333333332566666654 3556666666
No 87
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=41.66 E-value=2e+02 Score=23.75 Aligned_cols=6 Identities=17% Similarity=0.108 Sum_probs=2.4
Q ss_pred hHHHhh
Q 018056 164 LQQVYI 169 (361)
Q Consensus 164 l~eil~ 169 (361)
+.+++.
T Consensus 30 i~~~l~ 35 (140)
T PRK07353 30 VGKVVE 35 (140)
T ss_pred HHHHHH
Confidence 334443
No 88
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.26 E-value=2.5e+02 Score=25.93 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=7.7
Q ss_pred ccCeEEEcCCC
Q 018056 322 DNTKIFFGEKV 332 (361)
Q Consensus 322 ~~~~ii~~~~~ 332 (361)
.++|+|++++.
T Consensus 264 S~NkvyL~~~~ 274 (290)
T KOG3090|consen 264 SANKVYLSSDD 274 (290)
T ss_pred CCCeEEecccc
Confidence 36888887654
No 89
>PRK09098 type III secretion system protein HrpB; Validated
Probab=38.58 E-value=2e+02 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 234 AEKEAETSKKMAISEAEKNANVSKILM 260 (361)
Q Consensus 234 ~~~eAe~~~~i~~aeAe~~a~~~~a~A 260 (361)
..++|+.+++...++|+.+++....+|
T Consensus 44 ila~Ar~~A~~Il~~A~~~A~~I~~~A 70 (233)
T PRK09098 44 VLAAARARAERIVAEARAQAEAILEAA 70 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444
No 90
>CHL00080 psbM photosystem II protein M
Probab=38.47 E-value=26 Score=22.17 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhcccchhh
Q 018056 29 FLTFIAIVSLILIPSSSSV 47 (361)
Q Consensus 29 ~l~~~ai~~~~~~p~~~~~ 47 (361)
.|+|+|...++++|..+.+
T Consensus 5 ~lgfiAt~LFi~iPt~FLl 23 (34)
T CHL00080 5 ILAFIATALFILVPTAFLL 23 (34)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5789999999998886543
No 91
>PRK13665 hypothetical protein; Provisional
Probab=37.22 E-value=81 Score=29.82 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=8.4
Q ss_pred CeEE-EEEEEeCCCCCh
Q 018056 193 GIEI-ISVRVTKPTIPD 208 (361)
Q Consensus 193 GI~I-~~V~I~~i~~p~ 208 (361)
|+.- +.++|..|+.-+
T Consensus 207 GLDagTAFeIlSIDIAD 223 (316)
T PRK13665 207 GLDAGTAFEILSIDIAD 223 (316)
T ss_pred cCCcCceeEEEEEeeec
Confidence 5533 345566666544
No 92
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=36.89 E-value=4.8e+02 Score=26.72 Aligned_cols=17 Identities=6% Similarity=0.194 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018056 267 KDSARKQEEIDNQMYLA 283 (361)
Q Consensus 267 ~ea~~~~ae~~a~a~~~ 283 (361)
++.+..++++|-+-++.
T Consensus 205 r~tE~erae~EretiRv 221 (630)
T KOG0742|consen 205 RKTEMERAEAERETIRV 221 (630)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 33444455554444444
No 93
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=36.20 E-value=27 Score=22.28 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhcccchh
Q 018056 29 FLTFIAIVSLILIPSSSS 46 (361)
Q Consensus 29 ~l~~~ai~~~~~~p~~~~ 46 (361)
.|+|+|...++++|..+.
T Consensus 5 ~lgfiAt~Lfi~iPt~FL 22 (35)
T PRK04989 5 DLGFVASLLFVLVPTVFL 22 (35)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999999888654
No 94
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=35.99 E-value=41 Score=30.91 Aligned_cols=12 Identities=33% Similarity=0.224 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 018056 267 KDSARKQEEIDN 278 (361)
Q Consensus 267 ~ea~~~~ae~~a 278 (361)
|.|..+.|||++
T Consensus 207 k~aavIsAEGds 218 (271)
T KOG3083|consen 207 KKAAVISAEGDS 218 (271)
T ss_pred hhhheeecccch
Confidence 344444444433
No 95
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=35.25 E-value=54 Score=31.09 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHhccCchHHHhhhcH-HHH---HHHHHHHHHhhcccCCCCeEEEEEEEeCCCCCh
Q 018056 153 HEINQFCSSHSLQQVYIDVF-DQI---DEKMKDALQVDCTRYAPGIEIISVRVTKPTIPD 208 (361)
Q Consensus 153 ~~lR~vi~~~tl~eil~~~R-~~i---~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~ 208 (361)
.+.| .+++.|+..+++.++ .+| .+.+...++..+++ +=+-=.|.+.+|+.-+
T Consensus 142 ~sTr-~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~---~T~~WGvkVeRVEikD 197 (288)
T KOG2621|consen 142 NATR-LLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDE---ATEPWGVKVERVEIKD 197 (288)
T ss_pred HHHH-HHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhh---cccccceEEEEEEEee
Confidence 3443 578889999987432 122 23355555556665 4566677788887654
No 96
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=33.93 E-value=2.9e+02 Score=23.26 Aligned_cols=6 Identities=0% Similarity=0.041 Sum_probs=2.5
Q ss_pred hHHHhh
Q 018056 164 LQQVYI 169 (361)
Q Consensus 164 l~eil~ 169 (361)
+..++.
T Consensus 29 i~~~l~ 34 (156)
T PRK05759 29 IMKALE 34 (156)
T ss_pred HHHHHH
Confidence 334444
No 97
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=32.58 E-value=1.1e+02 Score=29.22 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=8.6
Q ss_pred CeEE-EEEEEeCCCCCh
Q 018056 193 GIEI-ISVRVTKPTIPD 208 (361)
Q Consensus 193 GI~I-~~V~I~~i~~p~ 208 (361)
|+.- +.++|.+|+.-+
T Consensus 202 gLDagTAFeIlSIDIaD 218 (316)
T PF12127_consen 202 GLDAGTAFEILSIDIAD 218 (316)
T ss_pred CCCcCceeEEEEeeeec
Confidence 5443 445666666544
No 98
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=31.82 E-value=36 Score=21.43 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhcccchhh
Q 018056 29 FLTFIAIVSLILIPSSSSV 47 (361)
Q Consensus 29 ~l~~~ai~~~~~~p~~~~~ 47 (361)
.++|+|...++++|+.+.+
T Consensus 5 ~l~fiAt~Lfi~iPt~FLi 23 (33)
T TIGR03038 5 ILGFIATLLFILVPTVFLL 23 (33)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788888888888876543
No 99
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=30.86 E-value=33 Score=23.37 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhcccch
Q 018056 29 FLTFIAIVSLILIPSSS 45 (361)
Q Consensus 29 ~l~~~ai~~~~~~p~~~ 45 (361)
.|+|+|...++++|..+
T Consensus 5 ~lgfiAtaLFi~iPT~F 21 (50)
T PRK14094 5 NFGFVASLLFVGVPTIF 21 (50)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58899999999988864
No 100
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.30 E-value=5.8e+02 Score=26.12 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 216 QMEEERTRVLIAIEKQKVAEKEAET 240 (361)
Q Consensus 216 ~m~Aere~~~~A~q~~~~~~~eAe~ 240 (361)
+++.||.++ +++.++.....+++.
T Consensus 125 ~~~~er~r~-~~Ee~rk~lq~qaq~ 148 (630)
T KOG0742|consen 125 QLKSERIRV-QAEERRKTLQEETQQ 148 (630)
T ss_pred hhhHHHHHH-HHHHHHHHHHHHHHH
Confidence 666777665 244444444444443
No 101
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=30.26 E-value=2.4e+02 Score=27.27 Aligned_cols=14 Identities=0% Similarity=-0.168 Sum_probs=6.8
Q ss_pred hhhceEEEecCCeE
Q 018056 49 SSLAILHQIPEGHV 62 (361)
Q Consensus 49 ~l~~~~~~V~~ge~ 62 (361)
++-.-|..|+.+..
T Consensus 42 ~L~~~Fa~VG~~~~ 55 (321)
T PF07946_consen 42 LLESNFALVGDDGS 55 (321)
T ss_pred HHHhhccccCCCCC
Confidence 33344555555544
No 102
>PRK15322 invasion protein OrgB; Provisional
Probab=28.47 E-value=4.5e+02 Score=23.85 Aligned_cols=18 Identities=0% Similarity=-0.018 Sum_probs=10.7
Q ss_pred HHHHHHh-------ccCeEEEcCCC
Q 018056 315 KFIEAIA-------DNTKIFFGEKV 332 (361)
Q Consensus 315 ~~~e~~~-------~~~~ii~~~~~ 332 (361)
+-++.|. ...++++|.+.
T Consensus 97 ~~le~Wl~~l~~~~~pL~l~lP~~a 121 (210)
T PRK15322 97 TVLDEWLRDFDKPEGQLFLTLPVNA 121 (210)
T ss_pred HHHHHHHHhCccccCceeEecChhh
Confidence 3477775 13557777743
No 103
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=28.27 E-value=1.1e+02 Score=18.77 Aligned_cols=11 Identities=45% Similarity=0.712 Sum_probs=8.1
Q ss_pred CCCCCchhHHH
Q 018056 16 RPQPGDSSAIL 26 (361)
Q Consensus 16 ~~~~~~~~~~~ 26 (361)
||++.|.++++
T Consensus 1 NPkT~D~a~i~ 11 (29)
T TIGR03063 1 NPKTGDSAQIG 11 (29)
T ss_pred CCCCccchhHH
Confidence 68888877654
No 104
>PRK15322 invasion protein OrgB; Provisional
Probab=28.14 E-value=3.4e+02 Score=24.64 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 231 QKVAEKEAETSKKMAISEAEKNANVSK 257 (361)
Q Consensus 231 ~~~~~~eAe~~~~i~~aeAe~~a~~~~ 257 (361)
+.....+|++.+.....+|+.+++..+
T Consensus 14 a~~l~~qA~~kA~~ii~qA~~eaE~ir 40 (210)
T PRK15322 14 AERLEQQARRRAKRILRQAEEEAETLR 40 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444433333333444333333
No 105
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=24.61 E-value=4.4e+02 Score=22.36 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=3.9
Q ss_pred ChhHHHHHH
Q 018056 207 PDRIRRNFE 215 (361)
Q Consensus 207 p~~i~~a~e 215 (361)
|.-+...++
T Consensus 24 ~~pi~~~l~ 32 (159)
T PRK09173 24 PGMIARSLD 32 (159)
T ss_pred HHHHHHHHH
Confidence 333444444
No 106
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=23.66 E-value=5.1e+02 Score=22.82 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 018056 231 QKVAEKEAETSK 242 (361)
Q Consensus 231 ~~~~~~eAe~~~ 242 (361)
+.....+|++++
T Consensus 18 a~~I~~eA~~~a 29 (185)
T PRK01194 18 KKEINDEYSKRI 29 (185)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 107
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=23.16 E-value=3.6e+02 Score=24.44 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhccCchHHHhhhcHHHHHHHHHHHHHhhccc
Q 018056 144 KTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTR 189 (361)
Q Consensus 144 ~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i~~~i~~~l~~~l~~ 189 (361)
...|+....+.+...++++++++++. .-+...|...+.+.+..
T Consensus 127 ~~~IRk~m~~~i~~~~~~~~~~e~V~---~~i~g~i~~eI~~~~k~ 169 (203)
T PRK04057 127 KHAIRKIMEEIIEEKASELTFEEFVQ---EIVFGKLASEIYKEAKK 169 (203)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHH---HHccchHHHHHHHhhhh
Confidence 46788888889999999999999985 23444444444444443
No 108
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.74 E-value=8.7e+02 Score=26.65 Aligned_cols=9 Identities=44% Similarity=0.490 Sum_probs=4.7
Q ss_pred CeEEEEEEE
Q 018056 193 GIEIISVRV 201 (361)
Q Consensus 193 GI~I~~V~I 201 (361)
|+.--++.+
T Consensus 456 ~v~~~~~~~ 464 (771)
T TIGR01069 456 GVENASVLF 464 (771)
T ss_pred CeEEeEEEE
Confidence 555555543
No 109
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=22.13 E-value=44 Score=20.74 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhcccchhh
Q 018056 29 FLTFIAIVSLILIPSSSSV 47 (361)
Q Consensus 29 ~l~~~ai~~~~~~p~~~~~ 47 (361)
.++|+|...++++|+.+.+
T Consensus 5 ~l~fiAtaLfi~iPt~FLi 23 (31)
T PF05151_consen 5 ILAFIATALFILIPTAFLI 23 (31)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 3678888888887776543
No 110
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=21.97 E-value=6.7e+02 Score=27.66 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 018056 210 IRRNFEQMEEERTR 223 (361)
Q Consensus 210 i~~a~e~m~Aere~ 223 (361)
+++++.+.++++++
T Consensus 219 ~qe~La~~qe~eE~ 232 (1064)
T KOG1144|consen 219 MQEALAKRQEEEER 232 (1064)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455543443333
No 111
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.18 E-value=91 Score=25.89 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=26.0
Q ss_pred HHHHHHhhcccchhhhhhhceEEEecCCeEEEEEeCCeecee
Q 018056 33 IAIVSLILIPSSSSVKSSLAILHQIPEGHVGVYWRGGALLET 74 (361)
Q Consensus 33 ~ai~~~~~~p~~~~~~~l~~~~~~V~~ge~gVv~r~Gk~~~~ 74 (361)
+.|+++++ ++.+++++.++..-..|-++.+.--|++.++
T Consensus 14 vIiv~LiI---~sf~~i~~f~~a~~~kG~~A~i~v~Gk~~r~ 52 (132)
T COG5341 14 VIIVMLII---LSFLPILLFSLAKAKKGAVAEISVDGKVIRT 52 (132)
T ss_pred EeehHHHH---HHHHHHHhheeeeccCCcEEEEEECCEEEEE
Confidence 33444443 3334566667777777988999989998775
Done!