Query 018056
Match_columns 361
No_of_seqs 248 out of 2084
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fvg_A Stomatin; mixed alpha-b 99.9 4.4E-23 1.5E-27 173.4 9.7 127 82-219 3-133 (133)
2 3bk6_A PH stomatin; archaea, t 99.9 2.4E-22 8.4E-27 178.5 14.3 127 86-223 2-132 (188)
3 1win_A Flotillin 2; BAND 7 dom 99.8 9.7E-20 3.3E-24 154.8 5.6 125 86-216 3-134 (143)
4 2rpb_A Hypothetical membrane p 99.7 1.5E-16 5.3E-21 129.3 7.5 107 92-209 4-113 (113)
5 2zuo_A MVP, major vault protei 98.3 0.00012 4E-09 76.2 24.1 148 54-209 459-648 (861)
6 2zuo_A MVP, major vault protei 88.3 5.2 0.00018 41.9 13.0 21 318-338 823-843 (861)
7 3bk6_A PH stomatin; archaea, t 82.7 1.7 5.8E-05 37.2 5.4 15 307-321 158-172 (188)
8 3v6i_A V-type ATP synthase sub 58.3 62 0.0021 27.2 9.5 11 320-330 114-124 (187)
9 4efa_E V-type proton ATPase su 51.8 1.2E+02 0.0041 26.4 11.4 35 207-243 10-44 (233)
10 4efa_G V-type proton ATPase su 38.6 73 0.0025 25.1 6.2 14 227-240 18-31 (119)
11 3arc_M Photosystem II reaction 21.9 28 0.00097 21.5 0.8 18 30-47 6-23 (36)
12 2b5u_A Colicin E3; high resolu 20.6 3.3E+02 0.011 26.8 8.3 24 192-215 278-301 (551)
No 1
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.88 E-value=4.4e-23 Score=173.40 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=97.7
Q ss_pred EEcCceeEEEEEEeeeeeeccccccccccCceEE---EEEEEEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHH
Q 018056 82 LKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQF 158 (361)
Q Consensus 82 f~~P~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~v 158 (361)
++.||++++.++|+|+++.++....+.|+|++.+ .++.|||.||.+ ++ |+.++++..+..++++++|++
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~--~~------~~v~~~~~~l~~~~~~~lR~v 74 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATL--AV------ANITNADSATRLLAQTTLRNA 74 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHH--HH------HSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHH--hH------hhhhhHHHHHHHHHHHHHHHH
Confidence 6789999999999999988887777899999765 578999999987 23 377889999999999999999
Q ss_pred hccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHH-HHHH
Q 018056 159 CSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFE-QMEE 219 (361)
Q Consensus 159 i~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e-~m~A 219 (361)
+|+++++++++ +|++|+.++++.+++.+++| ||+|.+|+|++++||++++++|+ +|+|
T Consensus 75 ig~~~ldeil~-~r~~i~~~i~~~l~~~~~~~--GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 75 LGTKNLSQILS-DREEIAHHMQSTLDDATDDW--GIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp HHTSCHHHHHH-CHHHHHHHHHHHHHHHHGGG--TEEEEEEEEEEEECCCC-----------
T ss_pred hccccHHHHHh-hHHHHHHHHHHHHHHHHhcC--CEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 99999999998 89999999999999999999 99999999999999999999998 4443
No 2
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.88 E-value=2.4e-22 Score=178.48 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=112.3
Q ss_pred ceeEEEEEEeeeeeeccccccccccCceEE---EEEEEEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccC
Q 018056 86 LITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSH 162 (361)
Q Consensus 86 ~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~ 162 (361)
|++++..+|+|.++.++....+.|+|++.| .++.|+|.||.+ ++ |+.+++...+.+.+++++|+++|++
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~--~~------~~v~~~~~~i~~~~~~~lR~vig~~ 73 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVK--AV------TQVKNYIMATSQISQTTLRSVIGQA 73 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHH--HH------HSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHH--HH------HHhcCHHHHHHHHHHHHHHHHHccC
Confidence 689999999999888777677899999866 467999999876 23 2556777888999999999999999
Q ss_pred chHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHH-HHHHHHHH
Q 018056 163 SLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFE-QMEEERTR 223 (361)
Q Consensus 163 tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e-~m~Aere~ 223 (361)
+++++++ +|++|+..|++.|++.+++| ||+|++|.|++|+||+++.++|+ +|+|||++
T Consensus 74 ~l~ell~-~R~~i~~~i~~~l~~~~~~~--GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~ 132 (188)
T 3bk6_A 74 HLDELLS-ERDKLNMQLQRIIDEATDPW--GIKVTAVEIKDVELPAGMQKAMARQAEAERER 132 (188)
T ss_dssp CHHHHHH-CHHHHHHHHHHHHHHHTGGG--TEEEEEEEEEEEEEETTHHHHHHHHHHHHHHH
T ss_pred CHHHHHh-hHHHHHHHHHHHHHHHHHhc--CeEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 9999998 89999999999999999999 99999999999999999999999 67777765
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.78 E-value=9.7e-20 Score=154.81 Aligned_cols=125 Identities=16% Similarity=0.211 Sum_probs=108.0
Q ss_pred ceeEEEEEEeeeeeeccccccccccCceEE---EEEEEEEe-ccchhHHHHHHHhhc-C--ccchHHHHHHHHHHHHHHH
Q 018056 86 LITHYEPVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVV-NRLRKEYVYETLRDY-G--VQYDKTWIYDKIHHEINQF 158 (361)
Q Consensus 86 ~i~~v~~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~-dp~~~~~~y~~~~~~-~--~~~~~~~I~~~v~~~lR~v 158 (361)
|++++.++|+|.++.++....+.|+|++.+ .++.|||. ||.. ++..+.+| + .+.....+.+.++++||++
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~---~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~v 79 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKEL---LAVACEQFLGKNVQDIKNVVLQTLEGHLRSI 79 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSC---CHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHH---HHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 679999999999998888778899999876 57899998 5766 33333222 2 2456788999999999999
Q ss_pred hccCchHHHhhhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChhHHHHHHH
Q 018056 159 CSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQ 216 (361)
Q Consensus 159 i~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~i~~a~e~ 216 (361)
+|++|++++++ +|++|+..+++.+++.+++| ||+|.+|+|+||++|+++.+||++
T Consensus 80 iG~~tldeils-~R~~i~~~v~~~~~~~~~~~--Gi~V~~v~IkdI~~p~~~~~am~~ 134 (143)
T 1win_A 80 LGTLTVEQIYQ-DRDQFAKLVREVAAPDVGRM--GIEILSFTIKDVYDKVDYLSSLGK 134 (143)
T ss_dssp HHHSCHHHHHH-THHHHHHHHHHHHHHHHTTT--TEEEEEEECCCEECTTCHHHHHCC
T ss_pred HhcCCHHHHHH-HHHHHHHHHHHHHHHHHHhC--CCEEEEEEEEeecChHHHHHHHHH
Confidence 99999999998 89999999999999999999 999999999999999999999983
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.65 E-value=1.5e-16 Score=129.30 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=93.9
Q ss_pred EEEeeeeeeccccccccccCceEE---EEEEEEEeccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHh
Q 018056 92 PVQVTLQTDQVTDIPCGTKGGVMI---NFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVY 168 (361)
Q Consensus 92 ~vd~r~q~~~~~~~~~~Tkd~v~v---~~v~~rI~dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil 168 (361)
++|+|.++.+.....+.|+|++.+ .++.|||.||.+ +| ++..++...+.+.+++++|+++|++++++++
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~---~~-----~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~ 75 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVK---AV-----YNVSDFLMAIVKLAQTNLRAIIGEMELDETL 75 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTT---CT-----TTTTHHHHHHHHHHHHHHHHHHTSCCTTHHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHH---HH-----HhcCCHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 467788877776667899999876 578999999987 22 2455677889999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCChh
Q 018056 169 IDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDR 209 (361)
Q Consensus 169 ~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~V~I~~i~~p~~ 209 (361)
+ +|++|+..+++.+++.+++| ||+|.+|.|++++||++
T Consensus 76 ~-~R~~i~~~i~~~l~~~~~~~--Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 76 S-GRDIINARLREELDKITDRW--GVKITRVEIQRIDPPKD 113 (113)
T ss_dssp H-CHHHHHHHHHHHHHHHHGGG--TEECCCEEECCCBCCCC
T ss_pred h-CHHHHHHHHHHHHHHHHHhc--CeEEEEEEEEEecCCCC
Confidence 8 99999999999999999999 99999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.33 E-value=0.00012 Score=76.21 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=91.5
Q ss_pred EEEecCCeEEEEEeCC-eeceeeeCCeeeEEcCceeEEEEEEeee---------eeec----c----ccccccccCceEE
Q 018056 54 LHQIPEGHVGVYWRGG-ALLETITHPGFHLKLPLITHYEPVQVTL---------QTDQ----V----TDIPCGTKGGVMI 115 (361)
Q Consensus 54 ~~~V~~ge~gVv~r~G-k~~~~~l~pGlhf~~P~i~~v~~vd~r~---------q~~~----~----~~~~~~Tkd~v~v 115 (361)
.|.||.+...-|+.+. +-.+++.+|-+.+.-|- +....++++- .+.- . ..+.+-|+|...+
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL 537 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL 537 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence 4678988888888752 22567789999777674 4444444311 0000 0 1224679998654
Q ss_pred ----EEEEEEEe--ccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCchHHHhhhcHHHH-HHHHHH-------
Q 018056 116 ----NFEKIEVV--NRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQI-DEKMKD------- 181 (361)
Q Consensus 116 ----~~v~~rI~--dp~~~~~~y~~~~~~~~~~~~~~I~~~v~~~lR~vi~~~tl~eil~~~R~~i-~~~i~~------- 181 (361)
+| .|.+. |+.++... . +-|++.++-.-+-..+.+.+|..+++.++++... +-..| ...+.-
T Consensus 538 ~L~LsY-nW~F~~~d~~~~~~~-~--k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHk-nsa~iir~aVFg~~~~~~~ 612 (861)
T 2zuo_A 538 QLQLAY-NWHFELKNRNDPAEA-A--KLFSVPDFVGDACKAIASRVRGAVASVTFDDFHK-NSARIIRMAVFGFEMSEDT 612 (861)
T ss_dssp EEEEEE-EEEECCTTTTCHHHH-H--GGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHH-HHHHHHHHHSSCCC-----
T ss_pred EEEEEE-EEEEeccCCCChhhh-h--hhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhh-hHHHHHHHhhcCCCccccc
Confidence 34 67763 55432111 1 1268888777778889999999999999999985 32222 221110
Q ss_pred --------HHH--hhcccCCCCeEEEEEEEeCCCCChh
Q 018056 182 --------ALQ--VDCTRYAPGIEIISVRVTKPTIPDR 209 (361)
Q Consensus 182 --------~l~--~~l~~~~~GI~I~~V~I~~i~~p~~ 209 (361)
... -.+... |+.|++|.|+.+.|-+.
T Consensus 613 ~~~~~~~~~~~~~~~F~~N--~lvitsVDvqsvEpvDq 648 (861)
T 2zuo_A 613 GPDGTLLPKARDQAVFPQN--GLVVSSVDVQSVEPVDQ 648 (861)
T ss_dssp --------CCCSCEECTTT--CEEEEEEEEEEEEESSH
T ss_pred ccccccccCcccceEEccC--CeEEEEEeeeeecccCH
Confidence 011 113444 99999999999999763
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=88.32 E-value=5.2 Score=41.93 Aligned_cols=21 Identities=5% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHhccCeEEEcCCCchhHHh
Q 018056 318 EAIADNTKIFFGEKVPSMILD 338 (361)
Q Consensus 318 e~~~~~~~ii~~~~~~~~~~~ 338 (361)
+.++=.+.+|-++++|..++.
T Consensus 823 ~~Lgl~~~litdG~sPinLf~ 843 (861)
T 2zuo_A 823 QSLGLKSTLITDGSSPINLFS 843 (861)
T ss_dssp ---------------------
T ss_pred HhCCCceEEecCCCChHHHHH
Confidence 333334556668888865544
No 7
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=82.74 E-value=1.7 Score=37.20 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=9.5
Q ss_pred CcHHHHHHHHHHHHh
Q 018056 307 LTPEYLELKFIEAIA 321 (361)
Q Consensus 307 l~~~~l~~~~~e~~~ 321 (361)
.+|..|+++++|++.
T Consensus 158 ~~~~~l~lr~le~~~ 172 (188)
T 3bk6_A 158 EHPMALQLRTLQTIS 172 (188)
T ss_dssp HCTTHHHHHHTTC--
T ss_pred hCHHHHHHHHHHHHH
Confidence 356778888777775
No 8
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=58.27 E-value=62 Score=27.20 Aligned_cols=11 Identities=0% Similarity=0.096 Sum_probs=4.7
Q ss_pred HhccCeEEEcC
Q 018056 320 IADNTKIFFGE 330 (361)
Q Consensus 320 ~~~~~~ii~~~ 330 (361)
+..+..+++++
T Consensus 114 l~~~~~vv~~~ 124 (187)
T 3v6i_A 114 LPGAKALVANP 124 (187)
T ss_dssp CTTCCEEEECT
T ss_pred cCCCCeEEECH
Confidence 33344455533
No 9
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=51.84 E-value=1.2e+02 Score=26.36 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018056 207 PDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKK 243 (361)
Q Consensus 207 p~~i~~a~e~m~Aere~~~~A~q~~~~~~~eAe~~~~ 243 (361)
|.++.+-+++|.+--.+. |+..+.....+|+.+..
T Consensus 10 ~~~v~~~i~~m~~fI~qE--A~eKA~EI~~kAeeE~~ 44 (233)
T 4efa_E 10 PNQVNDELNKMQAFIRKE--AEEKAKEIQLKADQEYE 44 (233)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 457777888877554443 55555554444444443
No 10
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=38.57 E-value=73 Score=25.11 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 018056 227 AIEKQKVAEKEAET 240 (361)
Q Consensus 227 A~q~~~~~~~eAe~ 240 (361)
|++++.....+|.+
T Consensus 18 AEk~A~~iV~~ARk 31 (119)
T 4efa_G 18 AEKEAHEIVSKARK 31 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344443334433
No 11
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=21.86 E-value=28 Score=21.46 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhcccchhh
Q 018056 30 LTFIAIVSLILIPSSSSV 47 (361)
Q Consensus 30 l~~~ai~~~~~~p~~~~~ 47 (361)
++|+|...++++|+.+.+
T Consensus 6 l~fiAt~Lfi~iPt~FLl 23 (36)
T 3arc_M 6 LGLIATALFVLVPSVFLI 23 (36)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678888888888876544
No 12
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.56 E-value=3.3e+02 Score=26.78 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=19.1
Q ss_pred CCeEEEEEEEeCCCCChhHHHHHH
Q 018056 192 PGIEIISVRVTKPTIPDRIRRNFE 215 (361)
Q Consensus 192 ~GI~I~~V~I~~i~~p~~i~~a~e 215 (361)
.|++-.-|.+.+|-.|.++++-.+
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqe 301 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQD 301 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHH
Confidence 388999999999999888766444
Done!