BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018058
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 195/329 (59%), Gaps = 31/329 (9%)
Query: 34 AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93
A VC + + + G + K E+A++ + E++IGT+ GGMDQ+IS +A+ G A+LI+F+
Sbjct: 169 ALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFS 228
Query: 94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
P+R TDV+LP+G FV+A+S E KA A S++N RV+ECRL A +LA ++
Sbjct: 229 PLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKYKSLQ----W 282
Query: 154 SKVKTLSDVEGLCVAFACKNGSS--DPVFAVKEFLRKEPYTALDIEKIT----EEKLTSI 207
KV L +V+ K G S + + ++ L EPY +I + EE T I
Sbjct: 283 DKVLRLEEVQA-------KLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI 335
Query: 208 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS 267
S ++ DVL +KL+QRA HVYSEA RV FK + E+ ++ LG+LMN S
Sbjct: 336 L--SPNTQDVL----IFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQS 387
Query: 268 HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 327
H SC +YECSCPEL++LV++CR GA G+RLTGAGWGGC V++V F+ N+ +
Sbjct: 388 HMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKA 447
Query: 328 FYQSRIDRGVINNNDLGLYVFASKPSSGA 356
+YQ R D + +FA+KP GA
Sbjct: 448 YYQ-RSDGSLAPEKQ---SLFATKPGGGA 472
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 193/371 (52%), Gaps = 58/371 (15%)
Query: 34 AFVCSSTVALMAA---FGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 90
AF+C+ +A++ A G + K+ + ++T E ++G +GGMDQA S+ + A +
Sbjct: 193 AFICAVALAVVKANMGPGYHMSKQNLMRITVVAEHYVGVNNGGMDQAASVCGEEDHALYV 252
Query: 91 DFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
+F P ++ T + P +FV+A++L S K TA +NYN RVVE A VLA
Sbjct: 253 EFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFETAPTNYNLRVVEVTTAANVLAATY 312
Query: 146 G---MKPQEAISKVK-TLSDVEGLCVAFACKNGSSDP---------------VFAVKEFL 186
G + +E S K L D + V +A + S P + V+E L
Sbjct: 313 GVVLLSGKEGSSTNKGNLRDF--MNVYYARYHNISTPWNGDIESGIERLTKMLVLVEESL 370
Query: 187 --RKEPYTALDI--------EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236
+K+ ++ D+ E+ T + LT+ S VL KL+QRA HVYSE
Sbjct: 371 ANKKQGFSVDDVAQSLNCSREEFTRDYLTT----SPVRFQVL------KLYQRAKHVYSE 420
Query: 237 AKRV-HAFK-DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGA 294
+ RV A K T +S ++ED K+ G LMN+S SC LYECSCPE++++ ++ +NG+
Sbjct: 421 SLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKLYECSCPEIDKICSIALSNGS 480
Query: 295 LGARLTGAGWGGCVVALVKESIDSQFILNLKE----QFYQSRIDRGVINNNDLGLYVFAS 350
G+RLTGAGWGGC V LV + I +KE +FY+ + + I + +L + S
Sbjct: 481 YGSRLTGAGWGGCTVHLVPGGPNGN-IEKVKEALANEFYKVKYPK--ITDAELENAIIVS 537
Query: 351 KPSSGAAKFKF 361
KP+ G+ ++
Sbjct: 538 KPALGSCLYEL 548
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 176/363 (48%), Gaps = 52/363 (14%)
Query: 33 TAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89
+AF C++ +A + A ++ KK++ ++T E ++G +GGMDQA S+ + A
Sbjct: 164 SAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALY 223
Query: 90 IDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
++F P ++ T + P +FV+A++L +S K TA +NYN RV+E + A LA +
Sbjct: 224 VEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATR 283
Query: 145 LGMK-PQEAISKVKTLSDVEGLCVAFACK--------NGS--------------SDPVFA 181
+ P + ++ A+ + NG + F+
Sbjct: 284 YSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFS 343
Query: 182 VKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA 237
K+ F E TAL+ E+ T + LT+ VL KL+QRA HVYSE+
Sbjct: 344 RKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL------KLYQRAKHVYSES 393
Query: 238 KRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGAL 295
RV A K S+ ++ED G LMN+S SC LYECSC E ++ ++ NG+
Sbjct: 394 LRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSF 453
Query: 296 GARLTGAGWGGCVVALVKESIDS---QFILNLKEQFYQSRIDRGVINNNDLGLYVFASKP 352
G+RLTGAGWGGC + LV + Q L E+FY R + + +L + SKP
Sbjct: 454 GSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPD--LTDEELKDAIIVSKP 511
Query: 353 SSG 355
+ G
Sbjct: 512 ALG 514
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 176/363 (48%), Gaps = 52/363 (14%)
Query: 33 TAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89
+AF C++ +A + A ++ KK++ ++T E ++G +GGMDQA S+ + A
Sbjct: 149 SAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALY 208
Query: 90 IDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
++F P ++ T + P +FV+A++L +S K TA +NYN RV+E + A LA +
Sbjct: 209 VEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATR 268
Query: 145 LGMK-PQEAISKVKTLSDVEGLCVAFACK--------NGS--------------SDPVFA 181
+ P + ++ A+ + NG + F+
Sbjct: 269 YSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFS 328
Query: 182 VKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA 237
K+ F E TAL+ E+ T + LT+ VL KL+QRA HVYSE+
Sbjct: 329 RKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL------KLYQRAKHVYSES 378
Query: 238 KRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGAL 295
RV A K S+ ++ED G LMN+S SC LYECSC E ++ ++ NG+
Sbjct: 379 LRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSF 438
Query: 296 GARLTGAGWGGCVVALVKESIDS---QFILNLKEQFYQSRIDRGVINNNDLGLYVFASKP 352
G+RLTGAGWGGC + LV + Q L E+FY R + + +L + SKP
Sbjct: 439 GSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPD--LTDEELKDAIIVSKP 496
Query: 353 SSG 355
+ G
Sbjct: 497 ALG 499
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 119/289 (41%), Gaps = 79/289 (27%)
Query: 41 VALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQ-AISIMAKSGFAEL-----IDFN 93
V L F + VP+ E+ QL + E +IG SG +DQ AI GF E+ +D N
Sbjct: 168 VVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAI------GFGEVKKAIELDCN 221
Query: 94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
++ V + +V + + +A+T S YN R E R EA+
Sbjct: 222 TLKYEMVPVELRDYDIVIMNTNKP-RALTE-SKYNERFAETR---------------EAL 264
Query: 154 SKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSS 213
+++T D++ L L E + A + + I +E L
Sbjct: 265 KRMQTRLDIQSLGE------------------LSNEEFDA-NTDLIGDETLI-------- 297
Query: 214 SLDVLNAAKQYKLHQRAAHVYSEAKRVH-AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCS 272
+RA H E R A K V+ NL+ K G+L+N SH S
Sbjct: 298 --------------KRARHAVYENNRTKIAQKAFVAGNLT------KFGELLNASHASLK 337
Query: 273 VLYECSCPELEELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQF 320
YE + EL+ L + G LGAR+TGAG+GGC +ALV S F
Sbjct: 338 DDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAF 386
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 18/117 (15%)
Query: 205 TSIFANSSSSLDVLNAAKQY------KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 258
T I A+++ ++ ++ KQ +L+ H+ S+A+ L + D L+
Sbjct: 195 TGINASTAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQ 243
Query: 259 KLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 315
+LG LMN +H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 244 RLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 197 EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLSEED 255
++I EE L + SS + + K LH++ +++ E RV +D + +E
Sbjct: 204 KRIAEESLRILGKESSKEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDAL-----KEG 258
Query: 256 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 312
++K+G ++ +H + Y SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 259 DIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAXELGAYGARLTGAGFGGSAIALV 315
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 205 TSIFANSSSSLDVLNAAKQY------KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 258
T I A+++ ++ ++ KQ +L+ H+ S+A+ L + D L+
Sbjct: 195 TGINASTAKVVNDVHKXKQQQPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQ 243
Query: 259 KLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 315
+LG L N +H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 244 RLGQLXNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 199 ITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLSEEDKL 257
I EE L + SS + +K LH++ ++ E RV +D + +E +
Sbjct: 204 IAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDAL-----KEGNV 258
Query: 258 KKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 312
+++G ++ +H + YE SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 259 EEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALV 313
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin-
Resistant Staphylococcus Aureus Mrsa252
Length = 308
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 248 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 307
+S++ E K + L D+ N+ H L S ++E+L+ + + NGA+ +LTGAG GG
Sbjct: 217 ASDVIEHHKFEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGS 275
Query: 308 VVALVKE 314
++ L K+
Sbjct: 276 MLLLAKD 282
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 225 KLHQRAAHVYSEAKRVH----AFKDTVSSNLSEEDKLKK---LGDLMNDSHHSCSVLYEC 277
K ++ A + +E ++ FK+ + + E K+K G LM +H L
Sbjct: 197 KRKKKTAELVNEVAKIENKDEIFKE-IDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 254
Query: 278 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 312
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 255 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 288
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 225 KLHQRAAHVYSEAKRVH----AFKDTVSSNLSEEDKLKK---LGDLMNDSHHSCSVLYEC 277
K ++ A + +E ++ FK+ + + E K+K G LM +H L
Sbjct: 200 KRKKKTAELVNEVAKIENKDEIFKE-IDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 257
Query: 278 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 312
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 258 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 291
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 310
+S++D + LG +++ +H + S E + LV ++GALGA+++G G GGC++A
Sbjct: 207 ISQKDA-EGLGQILSQAHLHLKEI-GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIA 264
Query: 311 LVKESIDSQ 319
LV +Q
Sbjct: 265 LVTNLTHAQ 273
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 85/231 (36%), Gaps = 76/231 (32%)
Query: 63 CEQ----FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL--PAGGTFVVAHSLAE 116
C+Q F G G DQ IS+ + G A LID + T+ V L P + ++
Sbjct: 177 CQQAEHSFAGXPCGIXDQFISLXGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRH 236
Query: 117 SLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSS 176
SL A+S Y R +C A L +E++ +V+ L ++E
Sbjct: 237 SL----ASSEYPVRRRQCEEVARALG-------KESLREVQ-LEELE------------- 271
Query: 177 DPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236
A ++ + KE + +RA HV E
Sbjct: 272 ----AARDLVSKEGF------------------------------------RRARHVVGE 291
Query: 237 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN 287
+R ++ L D + G L +SH S YE SCPEL++LV
Sbjct: 292 IRRT----AQAAAALRRGD-YRAFGRLXVESHRSLRDDYEVSCPELDQLVE 337
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 114 LAESLKAITAASNYNNRVVECRLTAIVLAI-KLGMKPQEAIS---------KVKTLSDVE 163
L E++ ++ +++ E +++ LA +L + P+E I+ ++ ++++
Sbjct: 12 LYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQ 71
Query: 164 GLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223
L VA G D V VK RK + + + + E S LD+LN+
Sbjct: 72 CLTVA-----GGQDNVMGVKYCFRKNDHVVIAMPYLEHE----------SFLDILNSLSF 116
Query: 224 YKLHQRAAHVYSEAKRVHAF----KDTVSSNLSEEDKLKK 259
++ + +++ KR+H F +D SN +LKK
Sbjct: 117 QEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKK 156
>pdb|4HTE|A Chain A, Crystal Structure Of The C-terminal Domain Of Nicking
Enzyme From Staphylococcus Aureus
Length = 353
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 208 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 263
+ N S S + N AK K++ + Y E +R++ K S +ED+L K+ D+
Sbjct: 19 YXNKSDSTTLKNXAKDLKIYVTPINXYKENERLYDLKQKTSLITDDEDRLNKIEDI 74
>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
pdb|3F9I|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
Length = 249
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 237 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALG 296
A+ +H V + S E+KLK LG+ + D++ + C+ EE N+ L
Sbjct: 31 ARLLHKLGSKVIISGSNEEKLKSLGNALKDNY----TIEVCNLANKEECSNLISKTSNLD 86
Query: 297 ARLTGAGWGGCVVA--LVKESIDSQFILNLKEQFYQSR 332
+ AG +A + + D +NLK F +R
Sbjct: 87 ILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNR 124
>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
pdb|3TCM|B Chain B, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
Length = 500
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 199 ITEEKLTSIFANSSSSLDVLNAAKQY--KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 256
+ E++ ++F S D ++ AKQ + RA YS ++ +H +D ++S ++ D
Sbjct: 98 LQREEIKTLF-----SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDG 152
Query: 257 LKKLGD 262
D
Sbjct: 153 FPANAD 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,255,769
Number of Sequences: 62578
Number of extensions: 345082
Number of successful extensions: 975
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 30
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)