Query 018058
Match_columns 361
No_of_seqs 139 out of 1376
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02521 galactokinase 100.0 7.2E-61 1.6E-65 482.9 34.1 349 13-361 148-496 (497)
2 COG0153 GalK Galactokinase [Ca 100.0 3.4E-58 7.5E-63 439.1 28.5 284 2-359 100-389 (390)
3 PTZ00290 galactokinase; Provis 100.0 5.9E-53 1.3E-57 420.9 29.1 295 13-360 133-457 (468)
4 PLN02865 galactokinase 100.0 3.6E-52 7.7E-57 411.5 31.8 295 2-359 114-423 (423)
5 PRK05322 galactokinase; Provis 100.0 1.2E-49 2.6E-54 392.9 31.6 284 3-359 97-387 (387)
6 PRK05101 galactokinase; Provis 100.0 3.5E-49 7.5E-54 389.2 30.9 269 12-358 110-381 (382)
7 PRK00555 galactokinase; Provis 100.0 1.5E-48 3.3E-53 382.0 29.1 279 3-359 77-362 (363)
8 TIGR00131 gal_kin galactokinas 100.0 3.5E-48 7.6E-53 383.1 28.9 274 13-358 109-385 (386)
9 PRK03817 galactokinase; Provis 100.0 1.5E-42 3.2E-47 339.1 30.1 267 12-360 84-351 (351)
10 KOG0631 Galactokinase [Carbohy 100.0 2.3E-42 4.9E-47 335.6 21.4 343 13-361 141-489 (489)
11 PLN02677 mevalonate kinase 100.0 9.3E-33 2E-37 271.0 26.0 236 12-359 127-382 (387)
12 COG1577 ERG12 Mevalonate kinas 100.0 2E-32 4.4E-37 259.6 21.1 213 12-330 81-294 (307)
13 PTZ00298 mevalonate kinase; Pr 100.0 1.2E-30 2.6E-35 252.8 27.6 218 13-332 93-314 (328)
14 COG2605 Predicted kinase relat 100.0 1.9E-30 4.2E-35 238.0 23.8 213 15-327 90-313 (333)
15 TIGR00549 mevalon_kin mevalona 100.0 2.6E-30 5.5E-35 244.1 23.0 196 13-311 77-273 (273)
16 TIGR01220 Pmev_kin_Gr_pos phos 100.0 3E-29 6.5E-34 245.5 24.3 213 12-325 98-343 (358)
17 PRK03926 mevalonate kinase; Pr 100.0 1.3E-28 2.9E-33 235.8 26.1 226 12-360 73-300 (302)
18 KOG1511 Mevalonate kinase MVK/ 100.0 3.7E-29 8.1E-34 234.2 21.2 241 8-360 121-381 (397)
19 PRK13412 fkp bifunctional fuco 100.0 3.8E-28 8.2E-33 257.8 26.0 213 13-326 725-950 (974)
20 PLN02451 homoserine kinase 99.9 1.6E-24 3.5E-29 212.5 24.8 225 13-360 133-366 (370)
21 COG0083 ThrB Homoserine kinase 99.9 2.8E-23 6E-28 195.5 25.2 218 14-360 77-298 (299)
22 PRK01212 homoserine kinase; Pr 99.9 2E-23 4.3E-28 200.0 24.2 219 13-359 80-301 (301)
23 TIGR00191 thrB homoserine kina 99.9 1.8E-22 4E-27 193.5 23.5 217 13-358 79-301 (302)
24 PTZ00299 homoserine kinase; Pr 99.9 1.3E-21 2.8E-26 189.2 22.1 223 13-360 81-323 (336)
25 PRK03188 4-diphosphocytidyl-2- 99.9 7.2E-21 1.6E-25 182.3 21.8 213 13-360 82-296 (300)
26 PRK02534 4-diphosphocytidyl-2- 99.9 1.8E-21 3.8E-26 187.5 17.5 223 13-359 85-311 (312)
27 TIGR01920 Shik_kin_archae shik 99.9 9.7E-21 2.1E-25 177.8 21.9 99 13-115 63-164 (261)
28 PRK00128 ipk 4-diphosphocytidy 99.9 3.3E-21 7.2E-26 183.4 16.2 188 13-327 83-272 (286)
29 PRK01123 shikimate kinase; Pro 99.9 3.6E-20 7.8E-25 176.0 22.4 99 13-116 74-175 (282)
30 TIGR01219 Pmev_kin_ERG8 phosph 99.8 3E-19 6.5E-24 178.1 25.5 243 12-330 111-431 (454)
31 TIGR00144 beta_RFAP_syn beta-R 99.8 1.3E-18 2.8E-23 168.2 23.9 221 13-359 81-324 (324)
32 TIGR00154 ispE 4-diphosphocyti 99.8 7.2E-19 1.6E-23 167.9 18.4 94 12-117 84-177 (293)
33 PRK14616 4-diphosphocytidyl-2- 99.8 2.1E-18 4.6E-23 164.2 16.7 193 13-330 82-276 (287)
34 PRK14614 4-diphosphocytidyl-2- 99.8 2.1E-18 4.5E-23 163.8 14.4 93 13-117 84-176 (280)
35 COG1907 Predicted archaeal sug 99.8 3.6E-17 7.7E-22 150.9 20.7 228 11-359 68-311 (312)
36 PRK14608 4-diphosphocytidyl-2- 99.8 7.1E-18 1.5E-22 160.8 16.2 93 13-117 89-181 (290)
37 PRK14615 4-diphosphocytidyl-2- 99.8 1.9E-17 4.2E-22 158.2 16.4 93 13-117 87-180 (296)
38 PRK14611 4-diphosphocytidyl-2- 99.7 6.3E-17 1.4E-21 153.2 17.9 93 13-117 79-171 (275)
39 PRK14613 4-diphosphocytidyl-2- 99.7 5.9E-17 1.3E-21 154.9 17.7 197 13-332 92-291 (297)
40 PRK14612 4-diphosphocytidyl-2- 99.7 2.8E-17 6E-22 155.7 13.3 89 13-117 82-170 (276)
41 PRK14609 4-diphosphocytidyl-2- 99.7 4.7E-17 1E-21 153.5 13.9 93 13-117 81-174 (269)
42 PRK00343 ipk 4-diphosphocytidy 99.6 2.2E-14 4.8E-19 135.5 15.5 92 13-117 86-177 (271)
43 PRK00650 4-diphosphocytidyl-2- 99.6 1.1E-13 2.4E-18 131.0 16.4 92 13-116 79-170 (288)
44 TIGR01240 mevDPdecarb diphosph 99.5 1.7E-12 3.7E-17 124.4 23.4 203 13-328 84-304 (305)
45 PF00288 GHMP_kinases_N: GHMP 99.5 2.7E-14 5.8E-19 106.3 8.1 67 16-83 1-67 (67)
46 PRK14610 4-diphosphocytidyl-2- 99.5 1.5E-13 3.3E-18 130.6 15.1 89 13-115 83-173 (283)
47 COG1685 Archaeal shikimate kin 99.5 2.1E-12 4.5E-17 118.5 19.8 99 13-115 69-170 (278)
48 COG1947 IspE 4-diphosphocytidy 99.5 2.2E-13 4.8E-18 128.0 12.6 92 13-116 84-175 (289)
49 PF08544 GHMP_kinases_C: GHMP 99.5 9.8E-14 2.1E-18 107.6 7.9 82 243-329 1-84 (85)
50 PRK05905 hypothetical protein; 99.3 1.8E-11 3.8E-16 114.5 12.1 90 13-116 85-175 (258)
51 KOG4644 L-fucose kinase [Carbo 99.3 1.2E-10 2.6E-15 114.6 17.2 212 13-324 690-918 (948)
52 KOG1537 Homoserine kinase [Ami 99.2 2.1E-10 4.6E-15 104.6 11.7 224 14-358 94-352 (355)
53 COG4542 PduX Protein involved 99.1 5.3E-09 1.1E-13 95.3 16.4 90 13-115 82-172 (293)
54 PRK04181 4-diphosphocytidyl-2- 99.0 7.6E-10 1.7E-14 103.7 9.3 92 13-117 85-177 (257)
55 PLN02407 diphosphomevalonate d 99.0 1.2E-07 2.6E-12 91.4 22.3 65 16-92 105-172 (343)
56 COG3407 MVD1 Mevalonate pyroph 98.8 6.9E-07 1.5E-11 85.6 21.5 91 13-115 89-187 (329)
57 COG3890 ERG8 Phosphomevalonate 98.7 3.3E-06 7.2E-11 78.1 19.5 87 26-116 107-203 (337)
58 COG1829 Predicted archaeal kin 98.6 2.5E-06 5.3E-11 79.2 17.3 95 13-114 73-170 (283)
59 KOG2833 Mevalonate pyrophospha 98.4 2.9E-05 6.3E-10 73.2 19.0 61 14-83 105-165 (395)
60 KOG4519 Phosphomevalonate kina 97.7 0.0026 5.6E-08 60.6 16.2 66 26-94 152-231 (459)
61 PF03460 NIR_SIR_ferr: Nitrite 66.5 15 0.00033 26.6 4.9 48 277-326 21-68 (69)
62 PF06153 DUF970: Protein of un 38.2 72 0.0016 26.0 4.8 52 281-332 12-68 (109)
63 COG2221 DsrA Dissimilatory sul 37.6 49 0.0011 32.0 4.4 46 278-325 43-88 (317)
64 PRK04181 4-diphosphocytidyl-2- 29.7 41 0.0009 31.5 2.5 27 278-313 229-255 (257)
65 TIGR00161 conserved hypothetic 29.5 1.6E+02 0.0034 27.3 6.3 50 11-65 166-215 (238)
66 COG1356 tfx Transcriptional re 28.7 3E+02 0.0066 23.1 7.0 49 186-250 19-67 (143)
67 TIGR00162 conserved hypothetic 27.0 2.5E+02 0.0053 25.0 6.9 48 11-65 110-159 (188)
68 COG0024 Map Methionine aminope 24.9 1.9E+02 0.0042 27.1 6.0 55 257-311 14-71 (255)
69 PRK05377 fructose-1,6-bisphosp 21.6 92 0.002 29.7 3.1 41 278-324 120-160 (296)
70 PF08060 NOSIC: NOSIC (NUC001) 20.1 1.8E+02 0.0039 20.1 3.7 32 257-288 9-40 (53)
No 1
>PLN02521 galactokinase
Probab=100.00 E-value=7.2e-61 Score=482.90 Aligned_cols=349 Identities=74% Similarity=1.118 Sum_probs=311.2
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
.||++.|.|+||+++|||||||++||++.|++.+++.++++++++++|+++|+++|.++|+|||+++++|+.|+++++||
T Consensus 148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~ 227 (497)
T PLN02521 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDF 227 (497)
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEec
Confidence 49999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~ 172 (361)
+++.++++++|.++.|+|++|++++.|+.++++.||.|++||+.|+++|+++.++..++......+|||+.+++..+.+.
T Consensus 228 ~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~ 307 (497)
T PLN02521 228 NPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGS 307 (497)
T ss_pred CCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhccc
Confidence 99999999999899999999999999999999999999999999999999888876543212367899997655444555
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCCC
Q 018058 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (361)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~ 252 (361)
....++...++..+.+..|+.++++.+.+..+++++++.++..+.++..+.+.+++|++|+++|+.||.+++++|+++++
T Consensus 308 ~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~ 387 (497)
T PLN02521 308 HGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLS 387 (497)
T ss_pred ccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCc
Confidence 56667788888888888899999988876666777777676666666677889999999999999999999999998754
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHHhcc
Q 018058 253 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 332 (361)
Q Consensus 253 ~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~~~ 332 (361)
.+.+++.||++|+++|.++|++|++|||++|.|++++++.|++|+||||||||||+++|++++..+++++.+++.|+++.
T Consensus 388 ~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y~~~~ 467 (497)
T PLN02521 388 EEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSR 467 (497)
T ss_pred cchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 44569999999999999999999999999999999999999999999999999999999999889999999999999876
Q ss_pred cCCCcccCCCCcceEEEeeCCCCeeeccC
Q 018058 333 IDRGVINNNDLGLYVFASKPSSGAAKFKF 361 (361)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 361 (361)
+.++++.+.++.+.+|+++|++||++++|
T Consensus 468 ~~~~~~~~~~~~~~~~~~~p~~Ga~~~~~ 496 (497)
T PLN02521 468 IEKGVIKEEDLGLYVFASKPSSGAAILKF 496 (497)
T ss_pred cccccccccCCCCcEEEEecCCCceEeec
Confidence 54456666678999999999999999875
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-58 Score=439.08 Aligned_cols=284 Identities=33% Similarity=0.483 Sum_probs=254.2
Q ss_pred Ccchhhhhh---cCcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHH
Q 018058 2 KGETVVIIT---KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA 77 (361)
Q Consensus 2 ~g~~~~~~~---~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~ 77 (361)
||++..+.. .++|+++.|.|+||.|+|||||||+.||++.++.++++.++++.+++++|+++|+ |+|.+||+|||+
T Consensus 100 kgvi~~l~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ~ 179 (390)
T COG0153 100 KGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQL 179 (390)
T ss_pred HHHHHHHHhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHHH
Confidence 677777777 4689999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred HHHhhcCCeEEEEecCCCceeeecCCCC-ceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhcc
Q 018058 78 ISIMAKSGFAELIDFNPIRTTDVQLPAG-GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (361)
Q Consensus 78 ~~~~Gg~~~~~~~~~~~~~~~~i~~p~~-~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~ 156 (361)
++.+|+.++++++||++++++++|+|.+ +.|+|+||++ |+.++++.||.|+.||+.|++.+++. .
T Consensus 180 ~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr~ece~A~~~l~~~-----------~ 245 (390)
T COG0153 180 ASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLGVS-----------I 245 (390)
T ss_pred HHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHHHHHHHHHHHHHHh-----------h
Confidence 9999999999999999999999999986 9999999999 57899999999999999999999872 1
Q ss_pred ccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhH
Q 018058 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236 (361)
Q Consensus 157 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E 236 (361)
++|+|++... +.++. +. ++ . .+.+++|+.|+++|
T Consensus 246 ~~L~d~~~~~-----------------------------~~~~~-----~~----i~-------~-~~~~~rRa~hvv~E 279 (390)
T COG0153 246 KSLRDVTDEE-----------------------------FAALQ-----AE----IE-------V-DPKIARRARHVVTE 279 (390)
T ss_pred hhhhhcCHHH-----------------------------HHhhh-----hh----cc-------c-chHHHHHHHHHHhH
Confidence 3677765421 11110 00 00 0 13478999999999
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHh-CCCceeEeeccCCCceEEEEecCC
Q 018058 237 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKES 315 (361)
Q Consensus 237 ~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~-~Ga~Gak~sGaG~GG~vi~L~~~~ 315 (361)
++|+.++++||.++| +.+||+||++||.+||++|+|||||+|+|++++.. .|++|+||||||||||+|+|++++
T Consensus 280 n~Rvl~a~~Al~~~d-----l~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~~ 354 (390)
T COG0153 280 NQRVLEAAKALRSGD-----LTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPND 354 (390)
T ss_pred HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceecCCCCCceEEEEechh
Confidence 999999999999876 99999999999999999999999999999999986 578999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCCeeec
Q 018058 316 IDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 359 (361)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 359 (361)
.++++.+.+.++|++..+ +++.+|+++|+.|++++
T Consensus 355 ~v~~~~e~v~~~y~~~~g---------~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 355 DVEAVAEAVAEEYEKVTG---------LKAAFYVVEASQGAGVC 389 (390)
T ss_pred hHHHHHHHHHHhHHhhcC---------ccccEEEEeccCCcccc
Confidence 999999999999998875 68899999999999975
No 3
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=5.9e-53 Score=420.90 Aligned_cols=295 Identities=21% Similarity=0.281 Sum_probs=235.5
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCC-----C------------C---CHHHHHHHHHHhcc-ccCCCC
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----E------------V---PKKEIAQLTCECEQ-FIGTQS 71 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~-----~------------l---~~~ela~la~~~E~-~~g~~~ 71 (361)
+||++.|.++||+|+|||||||+.||++.|++.+++. . + +..+++.+|+++|+ ++|.+|
T Consensus 133 ~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~c 212 (468)
T PTZ00290 133 QGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNV 212 (468)
T ss_pred CCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCc
Confidence 6999999999999999999999999999999998632 1 2 34889999999998 899999
Q ss_pred CchhHHHHHhhcCCeEEEEecCCCceeeecCC----CCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCC
Q 018058 72 GGMDQAISIMAKSGFAELIDFNPIRTTDVQLP----AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 147 (361)
Q Consensus 72 G~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~p----~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~ 147 (361)
|+|||+++++|+.++++++||+++++++++++ .++.|+|+||+++++...+++..||.||.||+.+++.|++..-
T Consensus 213 GiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l- 291 (468)
T PTZ00290 213 GIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRY- 291 (468)
T ss_pred chhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhccccc-
Confidence 99999999999999999999999999999875 3799999999997544333445999999999999999964310
Q ss_pred Cchhhhhcc-ccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHH-HHHHhhhhhhhhhhcCCCchhHHHhhhhHh
Q 018058 148 KPQEAISKV-KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALD-IEKITEEKLTSIFANSSSSLDVLNAAKQYK 225 (361)
Q Consensus 148 ~~~~~~~~~-~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (361)
+.. .+|||+.. ...+|+.++ ...+.. .+.+.+ .+.
T Consensus 292 ------~~~~~~Lrd~~~----------------------~~~~~~~~~~~~~~~~--------~~~~~l-------~~~ 328 (468)
T PTZ00290 292 ------RGKPFTFSDLVR----------------------NPKKYTFDGDVVAFME--------SCKPLM-------TPG 328 (468)
T ss_pred ------cchhhhHHHhhh----------------------ccccccccccHHHHHH--------HhhhcC-------CHH
Confidence 000 13333210 111232211 111100 001111 135
Q ss_pred HHHHHhHHHhHhHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH-hCCCceeEeecc
Q 018058 226 LHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGA 302 (361)
Q Consensus 226 ~~~r~~~~i~E~~rv~~~~~al~~~~--~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~-~~Ga~Gak~sGa 302 (361)
+++|+.|+++|+.||.+|+.+|++.. ..+.+++.||+||++||.+|+++|+||||++|.|++.+. +.|++|+|||||
T Consensus 329 ~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRlTGa 408 (468)
T PTZ00290 329 EFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRMMGG 408 (468)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEEecC
Confidence 78999999999999999999996311 112469999999999999999999999999999999764 579999999999
Q ss_pred CCCceEEEEecCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCCeeecc
Q 018058 303 GWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 360 (361)
Q Consensus 303 G~GG~vi~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 360 (361)
|||||+++|++++..+++++++++.|.++++ ..+.+|+++|++|++++.
T Consensus 409 G~GGc~i~Lv~~~~~~~~~~~v~~~y~~~~g---------~~~~~~~~~~~~Ga~~~~ 457 (468)
T PTZ00290 409 GFGGCIILLLKKNAVDRVVAHVREKFKARFG---------VENDVYPVVAGDGAFVVS 457 (468)
T ss_pred CCceEEEEEechhhHHHHHHHHHHHHHHhhC---------CCCcEEEEecCCCcEEEe
Confidence 9999999999999999999999999988765 478899999999999875
No 4
>PLN02865 galactokinase
Probab=100.00 E-value=3.6e-52 Score=411.52 Aligned_cols=295 Identities=26% Similarity=0.317 Sum_probs=247.8
Q ss_pred Ccchhhhhhc---C-cceeEEEEeCC-CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchh
Q 018058 2 KGETVVIITK---F-QLFNHINSLFF-NLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMD 75 (361)
Q Consensus 2 ~g~~~~~~~~---~-~g~~i~i~s~i-P~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D 75 (361)
+|++.+|.+. + +||++.|.++| |+++|||||||++||++.+++.+++.++++++++++|+++|+ ++|.+||+||
T Consensus 114 ~gv~~~l~~~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mD 193 (423)
T PLN02865 114 RGAVYALQSRGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILD 193 (423)
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcccc
Confidence 4666666543 3 69999999999 579999999999999999999999999999999999999997 8999999999
Q ss_pred HHHHHhhcCCeEEEEecCCCceeeecCC-------CCceEEEEecCCchhhhhhc-ccchhhHHHHHHHHHHHHHHHhCC
Q 018058 76 QAISIMAKSGFAELIDFNPIRTTDVQLP-------AGGTFVVAHSLAESLKAITA-ASNYNNRVVECRLTAIVLAIKLGM 147 (361)
Q Consensus 76 ~~~~~~Gg~~~~~~~~~~~~~~~~i~~p-------~~~~~ll~~s~~~~~~~~~~-~~~y~~r~~e~~~~~~~l~~~~~~ 147 (361)
|+++++|..|+++++||+++.++.+++| .++.|++++|+++ |.+. ++.||.||.||+.++++|++++++
T Consensus 194 Q~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~~---h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~ 270 (423)
T PLN02865 194 QSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLR---HALTNKPGYNLRVSECQEAARFLLEASGN 270 (423)
T ss_pred HHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEeCCCc---hhhcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999887777766 3688999999984 5655 789999999999999999987764
Q ss_pred CchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHH
Q 018058 148 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 227 (361)
Q Consensus 148 ~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (361)
... ..+|||+.. +++..... .+ .+.++
T Consensus 271 ~~~-----~~~Lr~~~~-----------------------------~~~~~~~~-~l------------------~~~l~ 297 (423)
T PLN02865 271 DEL-----EPLLCNVEP-----------------------------EVYEAHKC-KL------------------EAVLA 297 (423)
T ss_pred ccc-----hhhhhcCCH-----------------------------HHHHHHHh-hc------------------CHHHH
Confidence 211 235565432 11111100 00 12368
Q ss_pred HHHhHHHhHhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHh-CCCceeEeeccCCCc
Q 018058 228 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGG 306 (361)
Q Consensus 228 ~r~~~~i~E~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~-~Ga~Gak~sGaG~GG 306 (361)
+|++|+++|+.||.+++.+|++++ ++.||+||+++|.++|++|++||||+|.|++.+++ .|++|+|||||||||
T Consensus 298 ~Ra~Hv~~E~~Rv~~~~~al~~~d-----~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~Ga~GaR~tGgGfGG 372 (423)
T PLN02865 298 RRAEHYFSENMRVIKGVEAWASGN-----LEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRG 372 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence 999999999999999999999886 99999999999999999999999999999999998 599999999999999
Q ss_pred eEEEEecCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCCeeec
Q 018058 307 CVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 359 (361)
Q Consensus 307 ~vi~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 359 (361)
|+++|++.+.++++++++++.|+++..+ ..+.-+..+.+|+++|++|++++
T Consensus 373 c~vaLv~~~~~~~~~~~v~~~Y~~~~p~--~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 373 CCVAFVDAEMAEEAASFVRDEYEKAQPE--LASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred EEEEEEchhHHHHHHHHHHHHHHhhccc--cccccCCCCcEEEEecCCCcccC
Confidence 9999999999999999999999976420 00011357899999999999975
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=1.2e-49 Score=392.90 Aligned_cols=284 Identities=30% Similarity=0.398 Sum_probs=245.9
Q ss_pred cchhhhhhc---C-cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHH
Q 018058 3 GETVVIITK---F-QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA 77 (361)
Q Consensus 3 g~~~~~~~~---~-~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~ 77 (361)
|++..+... + +||++.|.|+||+++|||||||++||++.|++.+++.++++++++++|+++|+ ++|.|||+|||+
T Consensus 97 gvi~~l~~~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~ 176 (387)
T PRK05322 97 GVLKFLQEAGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQF 176 (387)
T ss_pred HHHHHHHHcCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHH
Confidence 444555432 2 79999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred HHHhhcCCeEEEEecCCCceeeecCCC-CceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhcc
Q 018058 78 ISIMAKSGFAELIDFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (361)
Q Consensus 78 ~~~~Gg~~~~~~~~~~~~~~~~i~~p~-~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~ 156 (361)
++++||.++++++|+++++.+.+++|. ++.|+++||+. ++.+.++.||.|+.||+.+++.+++++++
T Consensus 177 as~~G~~~~~~~~d~~~~~~~~~~~~~~~~~lvv~dsg~---~~~~~~~~yn~r~~e~~~a~~~l~~~~~~--------- 244 (387)
T PRK05322 177 AIGMGKKDHAILLDCNTLEYEYVPLDLGDYVIVIMNTNK---RRELADSKYNERRAECEKALEELQKKLDI--------- 244 (387)
T ss_pred HHHhccCCeEEEEecCCCceEEeccCCCCeEEEEEECCC---ccccCcchhhHHHHHHHHHHHHHhhhcCc---------
Confidence 999999999999999988888888864 67899999998 57888899999999999999999887653
Q ss_pred ccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhH
Q 018058 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236 (361)
Q Consensus 157 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E 236 (361)
.+|++++. +++..+... + ..+.+++|+.|++.|
T Consensus 245 ~~l~~~~~-----------------------------~~~~~~~~~-~-----------------~~~~~~~r~~h~v~e 277 (387)
T PRK05322 245 KSLGELTE-----------------------------EEFDEYSYL-I-----------------KDETLLKRARHAVTE 277 (387)
T ss_pred cchhcCCH-----------------------------HHHHHHHhh-c-----------------CCHHHHHHHHHHHHH
Confidence 24555322 111111000 0 012468999999999
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH-hCCCceeEeeccCCCceEEEEecCC
Q 018058 237 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVALVKES 315 (361)
Q Consensus 237 ~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~-~~Ga~Gak~sGaG~GG~vi~L~~~~ 315 (361)
+.|+..++.+|.++| ++.||++|+++|.+|++.|++++|++|.|++.++ +.|++|+||||||+|||+++|++.+
T Consensus 278 ~~r~~~~~~al~~~d-----~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~garlsGaG~GG~vial~~~~ 352 (387)
T PRK05322 278 NQRTLKAVKALKAGD-----LEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKD 352 (387)
T ss_pred HHHHHHHHHHHHhCC-----HHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEEEecCCCceEEEEEEcHH
Confidence 999999999999886 9999999999999999999999999999999997 5799999999999999999999988
Q ss_pred cHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCCeeec
Q 018058 316 IDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 359 (361)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 359 (361)
..+++.+.|++.|+++++ ..+.+|+++|++|++++
T Consensus 353 ~~~~~~~~l~~~y~~~~~---------~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 353 KVEAFKENVGKAYEEKIG---------YAASFYVAEIGDGAREL 387 (387)
T ss_pred HHHHHHHHHHHHHHHhcC---------CCCcEEEEecCCCcccC
Confidence 999999999999998765 57789999999999974
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=3.5e-49 Score=389.17 Aligned_cols=269 Identities=30% Similarity=0.434 Sum_probs=236.3
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
.+||++.|.|+||+++|||||||++||++.|++.+++.++++++++++|+++|+ ++|.|||.+||+++++||.++++++
T Consensus 110 ~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~ 189 (382)
T PRK05101 110 FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLI 189 (382)
T ss_pred CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEE
Confidence 369999999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred ecCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 018058 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (361)
Q Consensus 91 ~~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 170 (361)
++++.+++++++|+++.|+|+||+++ +.+..+.||.|+.||+.+++++... .|+++..
T Consensus 190 d~~~~~~~~~~~~~~~~~vv~~sg~~---~~l~~~~y~~r~~e~~~A~~~l~~~-------------~l~~~~~------ 247 (382)
T PRK05101 190 DCRSLETKAVPMPEGVAVVIINSNVK---RGLVDSEYNTRRQQCETAARFFGVK-------------ALRDVTL------ 247 (382)
T ss_pred EcCCCceEEeeCCCCcEEEEEeCCCC---ccccccchhHHHHHHHHHHHHhChH-------------hhhcCCH------
Confidence 99998888999998999999999995 5566789999999999999877432 3443221
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
+++..... . ..+.+++|+.|++.|+.|+.+++++|.++
T Consensus 248 -----------------------~~~~~~~~----~---------------l~~~~~~r~~h~i~E~~rv~~a~~al~~~ 285 (382)
T PRK05101 248 -----------------------EQFNAVAA----E---------------LDPVVAKRARHVITENARTLEAASALAAG 285 (382)
T ss_pred -----------------------HHHHHHHh----h---------------CCHHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 11111100 0 01246889999999999999999999988
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhC-CC-ceeEeeccCCCceEEEEecCCcHHHHHHHHHHHH
Q 018058 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GA-LGARLTGAGWGGCVVALVKESIDSQFILNLKEQF 328 (361)
Q Consensus 251 ~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~-Ga-~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~ 328 (361)
| ++.||++|+++|.+||+.|++|||++|.|++.+++. |+ +||||||||||||+++|++++..+++++++.+.|
T Consensus 286 d-----~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y 360 (382)
T PRK05101 286 D-----LKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQY 360 (382)
T ss_pred C-----HHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHH
Confidence 6 999999999999999988999999999999999996 97 4789999999999999999999999999999999
Q ss_pred HhcccCCCcccCCCCcceEEEeeCCCCeee
Q 018058 329 YQSRIDRGVINNNDLGLYVFASKPSSGAAK 358 (361)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 358 (361)
+++++ +.+.+|+++|+.|+++
T Consensus 361 ~~~~~---------~~~~~~~~~~~~Ga~~ 381 (382)
T PRK05101 361 EAKTG---------LKETFYVCKASQGAGQ 381 (382)
T ss_pred HHhhC---------CCCeEEEEecCCCccc
Confidence 98775 5778999999999986
No 7
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=1.5e-48 Score=382.01 Aligned_cols=279 Identities=25% Similarity=0.350 Sum_probs=239.8
Q ss_pred cchhhhhhc---CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHH
Q 018058 3 GETVVIITK---FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAI 78 (361)
Q Consensus 3 g~~~~~~~~---~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~ 78 (361)
|++..|... +.|+++.|.|+||+++|||||||++||++.|++.+++.++++++++++|+++|+ ++|.|||.|||++
T Consensus 77 gv~~~l~~~g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~a 156 (363)
T PRK00555 77 GVIWALRGAGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLA 156 (363)
T ss_pred HHHHHHHHcCCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHH
Confidence 455555542 469999999999999999999999999999999999999999999999999998 8899999999999
Q ss_pred HHhhcCCeEEEEecCCCceeeecCCCC---ceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhc
Q 018058 79 SIMAKSGFAELIDFNPIRTTDVQLPAG---GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (361)
Q Consensus 79 ~~~Gg~~~~~~~~~~~~~~~~i~~p~~---~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~ 155 (361)
+++||.|+++++++++..++++++|++ +.|+++||+++ +.+....||.|+.+|+.+++.+..
T Consensus 157 s~~G~~~~~~~~d~~~~~~~~v~~~~~~~~~~lvv~~s~~~---~~~~~~~y~~rr~~~~~~~~~~~~------------ 221 (363)
T PRK00555 157 ALFGAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRAR---HRHAGGEYAARRASCERAAADLGV------------ 221 (363)
T ss_pred HHhCCCCeEEEEEcCCCcEEEeccCCCcCceEEEEEcCCCc---ccccchhhHHHHHHHHHHHHHhCc------------
Confidence 999999999999998888888888753 57999999985 667778999999999998876631
Q ss_pred cccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHh
Q 018058 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 235 (361)
Q Consensus 156 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~ 235 (361)
.++|++... .+..+ .. ...+..++|+.|+++
T Consensus 222 -~~lr~~~~~-----------------------------~~~~~-----~~--------------~~~~~~~~r~~h~~~ 252 (363)
T PRK00555 222 -SSLRAVQDR-----------------------------GLAAL-----GA--------------IADPIDARRARHVLT 252 (363)
T ss_pred -cchhcCCHH-----------------------------HHHHH-----Hh--------------cCChHHHHHHHHHHH
Confidence 234443211 11100 00 011245789999999
Q ss_pred HhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCC
Q 018058 236 EAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 315 (361)
Q Consensus 236 E~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~ 315 (361)
|+.|+.+++++|.++| ++.||++|+++|+++|+.+++|+|++|.|++.+++.|++|+||||||||||+++|++.+
T Consensus 253 e~~~v~~~~~al~~gd-----~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~Gg~vial~~~~ 327 (363)
T PRK00555 253 ENQRVLDFAAALADSD-----FTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPAD 327 (363)
T ss_pred HHHHHHHHHHHHHcCC-----HHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhcCCeEEEECCCCccCeEEEEEchh
Confidence 9999999999999886 99999999999999998899999999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCCeeec
Q 018058 316 IDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 359 (361)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 359 (361)
..+++.+.+++.|+++++ ..+.+|+++|++|++++
T Consensus 328 ~~~~~~~~l~~~y~~~~~---------~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 328 RAEDVADTVRRAAVTAGY---------PEPAVSRTYAAPGAGEC 362 (363)
T ss_pred HHHHHHHHHHHHHHHccC---------CCCcEEEEecCCCcccC
Confidence 899999999999998775 46789999999999986
No 8
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=3.5e-48 Score=383.10 Aligned_cols=274 Identities=33% Similarity=0.455 Sum_probs=235.2
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
.||++.|.|+||+++|||||||++||++.|++.+++.++++++++++|+.+|+ ++|.++|+|||+++++||.+++++++
T Consensus 109 ~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~ 188 (386)
T TIGR00131 109 LGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVE 188 (386)
T ss_pred CceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEE
Confidence 49999999999999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred cCCCceeeecCCC-CceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 018058 92 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (361)
Q Consensus 92 ~~~~~~~~i~~p~-~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 170 (361)
++++.+.++++|+ ++.|+|+||+++ +.|.+..||.|++||+.+++.+..+. ..++|++.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~lvv~~s~~~---~~t~~~~y~~r~~e~~~a~~~l~~~~----------~~~lr~~~~~~---- 251 (386)
T TIGR00131 189 CRSLKATPFKFPQLGIAFVIANTNVK---RTLAPSNYNTRRQECTTAANFLAATD----------KGALRDFMNEY---- 251 (386)
T ss_pred cCCCceeeecCCCCCeEEEEEeCCCc---cccccchhHHHHHHHHHHHHHhcccc----------ccchhhCCHHH----
Confidence 9998889999987 899999999995 56777899999999999999886431 12445432210
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
+.. +...++. +. ..+++|+.|+++|+.||.+++++|.++
T Consensus 252 -----------~~~-----------~~~~~~~-~~------------------~~~~~r~~h~v~e~~rv~~~~~al~~~ 290 (386)
T TIGR00131 252 -----------FAR-----------YIARLTK-ML------------------PLVEERAKHVVSENLRVLKAVKAMKDN 290 (386)
T ss_pred -----------Hhh-----------hHhhHhh-cC------------------HHHHhhHheeehHHHHHHHHHHHHHhC
Confidence 000 0000000 01 125679999999999999999999987
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHH-HhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHH
Q 018058 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 329 (361)
Q Consensus 251 ~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a-~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~ 329 (361)
| ++.||++|+++|.+++++|++|||++|.+++.+ ++.|++|+||||||||||+++|++++.++++.+++++.|+
T Consensus 291 d-----~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~ 365 (386)
T TIGR00131 291 D-----FKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYP 365 (386)
T ss_pred c-----HHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHH
Confidence 5 999999999999999998999999999999876 5689999999999999999999998899999999999997
Q ss_pred hcccCCCcccCCCCcceEEEeeCCCCeee
Q 018058 330 QSRIDRGVINNNDLGLYVFASKPSSGAAK 358 (361)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 358 (361)
++++ .++.+|+++++.|++.
T Consensus 366 ~~~~---------~~~~~~~~~~~~Ga~~ 385 (386)
T TIGR00131 366 KKTG---------LELTFYVIVSKPGAGS 385 (386)
T ss_pred HhhC---------CCCcEEEEEECCCcCC
Confidence 6654 5788999999999875
No 9
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=1.5e-42 Score=339.06 Aligned_cols=267 Identities=31% Similarity=0.411 Sum_probs=232.1
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
.+||+++|+|+||+++|||||||+++|++.|++.+++.++++++++++|.++|+ ++|.++|++||+++++|+.+.++++
T Consensus 84 ~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~ 163 (351)
T PRK03817 84 VGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFL 163 (351)
T ss_pred CCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEE
Confidence 469999999999999999999999999999999999999999999999999998 7899999999999999998888888
Q ss_pred ecCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 018058 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (361)
Q Consensus 91 ~~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 170 (361)
++.+..+.++++|+++.|++++|+.+ +.+....||.|+.+|+.+++.++.. +++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~vv~~sg~~---~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~------- 220 (351)
T PRK03817 164 DTMTLEYEYVPFPEDYEILVFDTGVK---RELASSEYNERRQECEEALKILGKK-------------SSKEVT------- 220 (351)
T ss_pred ecCCCceEEEecCCCcEEEEEeCCCc---cccccchhHHHHHHHHHHHHHhCcc-------------chhcCC-------
Confidence 98887788888988999999999984 4455568999999999988877432 222211
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
.++... ++ ..+++|+.|++.|+.|+..++.+|.++
T Consensus 221 ----------------------~~~~~~-----l~------------------~~~~~~~~~~v~e~~r~~~~~~al~~~ 255 (351)
T PRK03817 221 ----------------------EEDLSK-----LP------------------PLLRKRAGYVLRENERVLKVRDALKEG 255 (351)
T ss_pred ----------------------HHHHHh-----CC------------------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 011100 00 135788999999999999999999988
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHHh
Q 018058 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 251 ~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
| ++.||++|+++|.++++.|++++|++|+|++.+++.|++|+||||||||||+++|+++++.+++++.+++.|.+
T Consensus 256 d-----~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vlal~~~~~~~~~~~~l~~~~~~ 330 (351)
T PRK03817 256 D-----IETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYKK 330 (351)
T ss_pred C-----HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEEEEchHHHHHHHHHHHHHHHH
Confidence 6 99999999999999999899999999999999999999999999999999999999888899999999999876
Q ss_pred cccCCCcccCCCCcceEEEeeCCCCeeecc
Q 018058 331 SRIDRGVINNNDLGLYVFASKPSSGAAKFK 360 (361)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 360 (361)
..+ +.+.+|++.|+.|++++.
T Consensus 331 ~~~---------~~~~~~~~~~~~G~~~~~ 351 (351)
T PRK03817 331 RFG---------IDPKYFVVESSDGVRKIE 351 (351)
T ss_pred hcC---------CCCcEEEEecCCCceeCC
Confidence 553 467899999999999873
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-42 Score=335.55 Aligned_cols=343 Identities=37% Similarity=0.541 Sum_probs=292.5
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEE
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF-GVE--VPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~-~~~--l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~ 89 (361)
-|+.+...+++|.|+||+||||+.++.+.|..++. |.+ ..+++++.++...|+++|.++|+|||.++++|..+++++
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~ 220 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLAEKGHALL 220 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeecccCcCCCcHHHHHHHHHhcCceEE
Confidence 39999999999999999999999999999999888 777 789999999999999999999999999999999999999
Q ss_pred Ee--cCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhh
Q 018058 90 ID--FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (361)
Q Consensus 90 ~~--~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~ 167 (361)
++ +.|++...+++|..-.|++.++.+.+++..++..+||.|+.|+..+...+..++++...+........+. -+. .
T Consensus 221 v~~~~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~-~~~-~ 298 (489)
T KOG0631|consen 221 VDPYFTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELPAYILRYQLQRA-WRG-D 298 (489)
T ss_pred ecccCCccccccccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccHHHHHhhhhhhc-ccc-c
Confidence 99 5588888888887779999999999999999999999999999999999999988765532111111111 000 1
Q ss_pred hhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHH
Q 018058 168 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 247 (361)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al 247 (361)
...+..++.+|+..|.+.+.+++|+.+++...++.+..++.++.+...++ ..+..++++|++|+++|+.|+.++..++
T Consensus 299 i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v--~~~~~k~~~rakHv~sea~rv~q~~~~~ 376 (489)
T KOG0631|consen 299 IGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAV--DLQVKKLYQRAKHVYSEALRVLQEEKLC 376 (489)
T ss_pred cchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233356778888888888889999999999988888887777777666 4566789999999999999999999999
Q ss_pred hcCCC-chHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHH
Q 018058 248 SSNLS-EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 326 (361)
Q Consensus 248 ~~~~~-~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~ 326 (361)
.+... .++.+..||+||++||.+.+.+|++||||+|+|++.++.+|.+|+|+||+|||||.+++++.+.++.+.+.+++
T Consensus 377 ~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGaGwGGc~v~lvp~d~~~~~~~~~~~ 456 (489)
T KOG0631|consen 377 ARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGVGARLTGAGWGGCTVALVPADLVDFAVAALKE 456 (489)
T ss_pred hcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCccceeeccccccceeeeccccchHHHHHhhhh
Confidence 98542 22458899999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred HHHhcccCCCcccCCCCcceEEEeeCCCCeeeccC
Q 018058 327 QFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 361 (361)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 361 (361)
.||++.. |-+..+..+..+++++|..|+.++.+
T Consensus 457 ~~Y~ka~--~~~~~~~~k~~~~~skp~~g~~l~el 489 (489)
T KOG0631|consen 457 IYYEKAY--PKFAQDELKKALIVSKPAAGVLLLEL 489 (489)
T ss_pred hhhcccc--chhhhchhhceEEEecCchhhhhccC
Confidence 9998875 56666667888999999999988764
No 11
>PLN02677 mevalonate kinase
Probab=100.00 E-value=9.3e-33 Score=271.03 Aligned_cols=236 Identities=22% Similarity=0.291 Sum_probs=175.7
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhC-CCC-------------CHHHHHHHHHHhcc-ccCCCCCchhH
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFG-VEV-------------PKKEIAQLTCECEQ-FIGTQSGGMDQ 76 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~-~~l-------------~~~ela~la~~~E~-~~g~~~G~~D~ 76 (361)
..++++.|.|+||+|+|||||||++||++.|+..+++ +++ +.+++.++|+.+|+ ++|.|+|+ |+
T Consensus 127 ~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~ 205 (387)
T PLN02677 127 FNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DN 205 (387)
T ss_pred CCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hH
Confidence 4689999999999999999999999999999999998 322 23678899999998 67999985 99
Q ss_pred HHHHhhcCCeEEEEecCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhcc
Q 018058 77 AISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (361)
Q Consensus 77 ~~~~~Gg~~~~~~~~~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~ 156 (361)
+++++|| ++.|+...+++++.+.+++|+|+||++|++|...
T Consensus 206 a~s~~Gg-----~I~f~~~~~~~l~~~~~l~llv~dTgv~~sT~~l---------------------------------- 246 (387)
T PLN02677 206 TVSTYGN-----MIKFKSGELTRLQSNMPLKMLITNTRVGRNTKAL---------------------------------- 246 (387)
T ss_pred HHHhcCC-----eEEEcCCCceecCCCCCceEEEEECCCCCcHHHH----------------------------------
Confidence 9999999 5666665667777777899999999998654332
Q ss_pred ccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhH
Q 018058 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236 (361)
Q Consensus 157 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E 236 (361)
++.|++...+.+ +.++ .+.+...++
T Consensus 247 ----------------------V~~V~~~~~~~p---~~~~---------------------------~il~~~~~i--- 271 (387)
T PLN02677 247 ----------------------VAGVSERALRHP---DAMK---------------------------SVFNAVDSI--- 271 (387)
T ss_pred ----------------------HHHHHHHHHhCH---HHHH---------------------------HHHHHHHHH---
Confidence 222222211110 0010 112233332
Q ss_pred hHHHHHHHHHHhc--CCC--chHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEe
Q 018058 237 AKRVHAFKDTVSS--NLS--EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 312 (361)
Q Consensus 237 ~~rv~~~~~al~~--~~~--~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~ 312 (361)
+.++.++|.+ ++. .++++..|+++|+.+|..|+.+ |+|+|.||.+++.+++.| +|||+||||+|||+|+|+
T Consensus 272 ---~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~L-GVS~~~le~iv~~a~~~~-~~AKlTGAGgGGC~IaL~ 346 (387)
T PLN02677 272 ---SEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCM-GVSHSSIETVLRTTLKYK-LVSKLTGAGGGGCVLTLL 346 (387)
T ss_pred ---HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHcC-CccccccCCCCCEEEEEc
Confidence 3455667776 221 1146999999999999999988 899999999999999985 799999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-Ceeec
Q 018058 313 KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 359 (361)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 359 (361)
+++..++.++.+.+++.+.++ .+|.+.++. |.+|.
T Consensus 347 ~~~~~~~~~~~l~~~l~~~G~------------~~~~~~~g~~Gv~~~ 382 (387)
T PLN02677 347 PTLLSGTVVDKVIAELESSGF------------QCFTAGIGGNGVQIC 382 (387)
T ss_pred ccccchhHHHHHHHHHHHCCC------------eEEEEEeCCCceEEE
Confidence 765444555566666665544 678888775 87764
No 12
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=2e-32 Score=259.56 Aligned_cols=213 Identities=29% Similarity=0.401 Sum_probs=159.5
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
.+||++.|.|+||+++|||||||++||++.|++..+|..+++++++++++++|. .+|.++ ++|.+++++|| ++++
T Consensus 81 ~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~S-g~D~a~~~~gg---~v~~ 156 (307)
T COG1577 81 LKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKAS-GIDIATITYGG---LVAF 156 (307)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCC-cccceEEEeCC---EEEE
Confidence 468999999999999999999999999999999999999999999999999998 456666 59999999999 3333
Q ss_pred ecCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 018058 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (361)
Q Consensus 91 ~~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 170 (361)
.. ...++++.++....|+++|++.+.++..
T Consensus 157 ~~-~~~~~~l~~~~~~~~~I~~tg~~~sT~e------------------------------------------------- 186 (307)
T COG1577 157 KK-GFDFEKLEIELLGTLVIGDTGVPGSTKE------------------------------------------------- 186 (307)
T ss_pred ec-CCCccccccccCCeEEEEEcCCcCcHHH-------------------------------------------------
Confidence 32 1355666665544899999998754321
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
+++.|++++++. ++.++ .+++.... -+.++..+++.+
T Consensus 187 -------~V~~V~~l~~~~---------------~~~~~---------------~~~~~ig~------~~~~a~~al~~~ 223 (307)
T COG1577 187 -------LVAGVAKLLEEE---------------PEVID---------------PILDAIGE------LVQEAEAALQTG 223 (307)
T ss_pred -------HHHHHHHHHHhh---------------hHHHH---------------HHHHHHHH------HHHHHHHHHhcc
Confidence 112222222111 00000 11222221 234556778876
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHHh
Q 018058 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 251 ~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
| .+.||++|+.+|..|..+ ++|+|++|+|++.+++.|+.|||+||||+|||+|+|+++.+ ..+.+..+.++
T Consensus 224 d-----~e~lgelm~~nq~LL~~L-gVs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~~---~~~~l~~~~~~ 294 (307)
T COG1577 224 D-----FEELGELMNINQGLLKAL-GVSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEE---IAETLSNRLEK 294 (307)
T ss_pred c-----HHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHhcCccccccccCCCCceEEEEeccch---HHHHHHHHHHh
Confidence 5 999999999999999998 89999999999999999999999999999999999998622 13444444443
No 13
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=1.2e-30 Score=252.83 Aligned_cols=218 Identities=22% Similarity=0.293 Sum_probs=169.5
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
+|++++|.++||+++|||||||++||++.+++.+++.+++.++++++|..+|+ ++|.++| +|++++++|| +++.+
T Consensus 93 ~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG-~D~~~~~~Gg---~~~~~ 168 (328)
T PTZ00298 93 DGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSG-ADNTAATYGG---LISYR 168 (328)
T ss_pred CCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCh-HHHHHHHcCC---eEEEe
Confidence 49999999999999999999999999999999999999999999999999998 7899998 5999999999 33443
Q ss_pred cCC--CceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 018058 92 FNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (361)
Q Consensus 92 ~~~--~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~ 169 (361)
... ..+.++++|+++.+++++|+++.++... |.. ++. +++
T Consensus 169 ~~~g~~~~~~l~~~~~~~lvv~~~~~~~sT~~~----~~~-----------v~~---------------~~~-------- 210 (328)
T PTZ00298 169 RVNGKSVFKRIAFQQPLYLVVCSTGITASTTKV----VGD-----------VRK---------------LKE-------- 210 (328)
T ss_pred cCCCccceeEecCCCCCeEEEEECCCchhHHHH----HHH-----------HHH---------------HHh--------
Confidence 222 2456777777889999999986432111 100 000 000
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhc
Q 018058 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (361)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~ 249 (361)
. . .+.+. .+.++..+ .+.++..+|.+
T Consensus 211 ------------------~--~-p~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 236 (328)
T PTZ00298 211 ------------------N--Q-PTWFN---------------------------RLLENYNA------CVSEAKEALQK 236 (328)
T ss_pred ------------------c--C-HHHHH---------------------------HHHHHHHH------HHHHHHHHHHc
Confidence 0 0 00000 11233333 34566778887
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecC-CcHHHHHHHHHHHH
Q 018058 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQF 328 (361)
Q Consensus 250 ~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~-~~~~~~~~~l~~~~ 328 (361)
+| ++.|+++|+++|+.++.. ++++|++|++++.+++.|++|+||||+|+|||+++|+++ +.++++.+.+++.|
T Consensus 237 ~d-----~~~lg~~m~~~~~~l~~~-~v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~ 310 (328)
T PTZ00298 237 GN-----LFRVGELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARC 310 (328)
T ss_pred CC-----HHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHh
Confidence 75 999999999999999865 789999999999999999999999999999999999976 57888999998888
Q ss_pred Hhcc
Q 018058 329 YQSR 332 (361)
Q Consensus 329 ~~~~ 332 (361)
....
T Consensus 311 ~~~~ 314 (328)
T PTZ00298 311 PEAK 314 (328)
T ss_pred hhcC
Confidence 7654
No 14
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=237.97 Aligned_cols=213 Identities=20% Similarity=0.266 Sum_probs=167.7
Q ss_pred eeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEEecC
Q 018058 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFN 93 (361)
Q Consensus 15 ~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~~~~ 93 (361)
++++..+++|+|+|||||||++||++.|+..+-|..+++++||++|+++|+ .++...|.|||++++|||++ |++|.
T Consensus 90 ~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFn---fMEf~ 166 (333)
T COG2605 90 IELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFN---FMEFR 166 (333)
T ss_pred eEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCce---EEEEc
Confidence 999999999999999999999999999999999999999999999999998 78999999999999999977 77765
Q ss_pred C---CceeeecCCC------CceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 018058 94 P---IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (361)
Q Consensus 94 ~---~~~~~i~~p~------~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~ 164 (361)
+ ..++|+++.. +.+++++++++.+. . .+++.
T Consensus 167 ~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~---S---------------s~V~~---------------------- 206 (333)
T COG2605 167 GNGEVVVNPLRINRERTAELEARLLLYYTGITRQ---S---------------SEVIE---------------------- 206 (333)
T ss_pred CCCcEEEeecccchhHHHHHHhceEEEEeccccc---h---------------hHHHH----------------------
Confidence 4 4566666543 35667777766321 0 01110
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHH
Q 018058 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (361)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~ 244 (361)
+++++...++ ++ ..++.|-+.+ -+.++.
T Consensus 207 ---------------dQ~~~~~~~~----~~-------------------------------~~e~~~~mk~--~A~~~~ 234 (333)
T COG2605 207 ---------------DQVRNVVDGD----EE-------------------------------TLEALHEMKA--LAYEMK 234 (333)
T ss_pred ---------------HHHHHhhccc----HH-------------------------------HHHHHHHHHH--HHHHHH
Confidence 1222221111 00 0112222221 244677
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHhhhh-cCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHH
Q 018058 245 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 323 (361)
Q Consensus 245 ~al~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~ 323 (361)
++|-++| +.+||++|+.+|+..+.+ -++|+|.+|+|++.|+++||+|+|++|||+||+++.+|++++.++++++
T Consensus 235 ~al~~nd-----~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~~~l~r~ 309 (333)
T COG2605 235 DALVRND-----IPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKRNELARA 309 (333)
T ss_pred HHHHhcc-----hHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeCccchHHHHHH
Confidence 8888775 999999999999999988 4799999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 018058 324 LKEQ 327 (361)
Q Consensus 324 l~~~ 327 (361)
|++.
T Consensus 310 l~~~ 313 (333)
T COG2605 310 LEKE 313 (333)
T ss_pred HHHh
Confidence 9764
No 15
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.97 E-value=2.6e-30 Score=244.08 Aligned_cols=196 Identities=29% Similarity=0.376 Sum_probs=150.4
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
.+++++|.|+||.++|||||||+++|++.|++.+++.++++++++++|+++|+ ++|.++| +|++++++|| +++++
T Consensus 77 ~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG-~D~~~~~~Gg---~~~~~ 152 (273)
T TIGR00549 77 PPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSG-IDTATSTYGG---PVYFE 152 (273)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCch-HhHHHHhcCC---eEEEE
Confidence 35999999999999999999999999999999999999999999999999998 6799998 5999999998 44555
Q ss_pred cCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 018058 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (361)
Q Consensus 92 ~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 171 (361)
.... ..+++.+.++.+++++|+.++++... .+.+.
T Consensus 153 ~~~~-~~~~~~~~~~~lvl~~tg~~~~T~~~---------------~~~v~----------------------------- 187 (273)
T TIGR00549 153 KGEG-EFTKLISLDGYFVIADTGVSGSTKEA---------------VARVR----------------------------- 187 (273)
T ss_pred cCCC-ceeeccCCCeEEEEEECCCCCcHHHH---------------HHHHH-----------------------------
Confidence 4432 23444455688999999986432211 00000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCC
Q 018058 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (361)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~ 251 (361)
+..... .+.+. ...++.. .++.+++.+|.++|
T Consensus 188 ------------~~~~~~---~~~~~---------------------------~~~~~~~------~~~~~~~~al~~~d 219 (273)
T TIGR00549 188 ------------QLLERF---PELID---------------------------SIMDAIG------ELTLEAKAALQDGD 219 (273)
T ss_pred ------------HHHHhC---HHHHH---------------------------HHHHHHH------HHHHHHHHHHHhCC
Confidence 000000 00000 0111211 35667788998875
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEE
Q 018058 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 311 (361)
Q Consensus 252 ~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L 311 (361)
++.||++|+++|..+++. ++++|++|+|++.+++.|++|+||||||+|||+++|
T Consensus 220 -----~~~lg~l~~~~~~~l~~~-~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 220 -----VESLGELMNINQGLLKAL-GVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred -----HHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 999999999999998865 899999999999999999999999999999999986
No 16
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.97 E-value=3e-29 Score=245.51 Aligned_cols=213 Identities=17% Similarity=0.191 Sum_probs=158.4
Q ss_pred CcceeEEEEeCCCCC----CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCe
Q 018058 12 FQLFNHINSLFFNLG----SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g----~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~ 86 (361)
++||++.|.|+||++ +|||||||++||++.|++.+++.++++++++++|+.+|+ ++|.++ .+|++++++||.
T Consensus 98 ~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~s-g~D~~a~~~GG~-- 174 (358)
T TIGR01220 98 LPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGS-CGDIAASTYGGW-- 174 (358)
T ss_pred CCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCC-cchhhhhhhCCE--
Confidence 469999999999984 699999999999999999999999999999999999998 455544 479999999993
Q ss_pred EEEEecC----------------------CCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHH
Q 018058 87 AELIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144 (361)
Q Consensus 87 ~~~~~~~----------------------~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~ 144 (361)
+.|-++. +..++++++|++++|++++|+.++++...
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~~T~~~---------------------- 232 (358)
T TIGR01220 175 IAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPASTASL---------------------- 232 (358)
T ss_pred EEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCCcCcHHH----------------------
Confidence 2222222 23467788887899999999987432211
Q ss_pred hCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhH
Q 018058 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 224 (361)
Q Consensus 145 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (361)
++.|++...+. + +.+.
T Consensus 233 ----------------------------------v~~V~~~~~~~--~-~~~~--------------------------- 248 (358)
T TIGR01220 233 ----------------------------------VSDVHRRKWRG--S-ASYQ--------------------------- 248 (358)
T ss_pred ----------------------------------HHHHHHHhhcC--h-HHHH---------------------------
Confidence 11111111100 0 0000
Q ss_pred hHHHHHhHHHhHhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhh-----cCCCChhHHHHHHHHHhCCCceeEe
Q 018058 225 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-----YECSCPELEELVNVCRNNGALGARL 299 (361)
Q Consensus 225 ~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~-----~~vs~peld~lv~~a~~~Ga~Gak~ 299 (361)
...+++.. -+.++.++|.++| ++.|+++|+++|..|+.+ .++++|++++|++.+++.|+ |+|+
T Consensus 249 ~~l~~~~~------i~~~~~~al~~~d-----~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga-~aKl 316 (358)
T TIGR01220 249 RFLETSTD------CVESAITAFETGD-----ITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGG-AAKP 316 (358)
T ss_pred HHHHHHHH------HHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCc-eecC
Confidence 01222222 2456778888875 999999999999999976 37999999999999999997 9999
Q ss_pred eccCCCceEEEEecCC-cHHHHHHHHH
Q 018058 300 TGAGWGGCVVALVKES-IDSQFILNLK 325 (361)
Q Consensus 300 sGaG~GG~vi~L~~~~-~~~~~~~~l~ 325 (361)
||||+|||+|+|++++ ..+++.++|+
T Consensus 317 sGAGgGg~~ial~~~~~~~~~~~~~~~ 343 (358)
T TIGR01220 317 SGAGGGDCGIAILDAEADITHVRQRWE 343 (358)
T ss_pred CCCCCcCEEEEEeCCchhHHHHHHHHH
Confidence 9999999999999764 4444444444
No 17
>PRK03926 mevalonate kinase; Provisional
Probab=99.97 E-value=1.3e-28 Score=235.81 Aligned_cols=226 Identities=27% Similarity=0.269 Sum_probs=167.3
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
.+|++++|.++||+++|||||||+++|++.+++++++.++++++++++|.++|+ +.|.++| +|++++++|| +++.
T Consensus 73 ~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg-~D~~~~~~Gg---~~~~ 148 (302)
T PRK03926 73 KDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASP-TDTYVSTMGG---FVTI 148 (302)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCch-HHHHHHhcCC---eEEE
Confidence 369999999999999999999999999999999999999999999999999998 6788877 7999999998 3343
Q ss_pred ecCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 018058 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (361)
Q Consensus 91 ~~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 170 (361)
.... +++.+ ++.+++++|+.+.++... | +.+.. +++
T Consensus 149 ~~~~----~l~~~-~~~~vl~~~~~~~sT~~~----~-----------~~~~~---------------~~~--------- 184 (302)
T PRK03926 149 PDRK----KLPFP-ECGIVVGYTGSSGSTKEL----V-----------ANVRK---------------LKE--------- 184 (302)
T ss_pred cCCC----cCCCC-CceEEEEECCCCCcHHHH----H-----------HHHHH---------------HHH---------
Confidence 3222 44433 788999999986432111 0 00100 000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
. .. +.+.. ..++..+ -+..+.+++.++
T Consensus 185 --------------~-----~~-~~~~~---------------------------~~~~~~~------~~~~~~~al~~~ 211 (302)
T PRK03926 185 --------------E-----YP-ELIEP---------------------------ILSSIGK------ISEKGEELILSG 211 (302)
T ss_pred --------------h-----CH-HHHHH---------------------------HHHHHHH------HHHHHHHHHhcC
Confidence 0 00 00000 0011111 122345677766
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHHh
Q 018058 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 251 ~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
| ++.|+++|+++|..+.. +++++|+++++++.+++.|++|+||||+|+|||+++|++++..+++.+++++.
T Consensus 212 d-----~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~~~--- 282 (302)
T PRK03926 212 D-----YVSLGELMNINQGLLDA-LGVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAPEKQSEVATAIKIA--- 282 (302)
T ss_pred C-----HHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEeccccHHHHHHHHHhc---
Confidence 5 99999999999976654 58999999999999999999999999999999999999887777888777642
Q ss_pred cccCCCcccCCCCcceEEEeeCCC-Ceeecc
Q 018058 331 SRIDRGVINNNDLGLYVFASKPSS-GAAKFK 360 (361)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 360 (361)
...++++++.+ |++|..
T Consensus 283 -------------~~~~~~~~~~~~G~~i~~ 300 (302)
T PRK03926 283 -------------GGKPIITKITDEGLRIEE 300 (302)
T ss_pred -------------CCeEEEEecCCCeeEEEe
Confidence 13578999864 998864
No 18
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.97 E-value=3.7e-29 Score=234.20 Aligned_cols=241 Identities=23% Similarity=0.301 Sum_probs=176.2
Q ss_pred hhhcCcc----eeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH--------H--H-HHHHHHHhcc-ccCCCC
Q 018058 8 IITKFQL----FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------K--E-IAQLTCECEQ-FIGTQS 71 (361)
Q Consensus 8 ~~~~~~g----~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~--------~--e-la~la~~~E~-~~g~~~ 71 (361)
++.+.+| +.+.|+|++|+|+|||||||++|+++.+++.+.|.-.++ + + |-++|.+.|+ ++|.|+
T Consensus 121 l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpS 200 (397)
T KOG1511|consen 121 LCLRAPGTLPALTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPS 200 (397)
T ss_pred hhhcccCCCcceEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCc
Confidence 4555566 999999999999999999999999999999988763222 3 2 4588999998 789999
Q ss_pred CchhHHHHHhhcCCeEEEEecCCC-ceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCch
Q 018058 72 GGMDQAISIMAKSGFAELIDFNPI-RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ 150 (361)
Q Consensus 72 G~~D~~~~~~Gg~~~~~~~~~~~~-~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~ 150 (361)
| .|+.+|+||| .+.|++. .++.+...+.++++++||.+|+++....
T Consensus 201 G-iDnaV~t~Gg-----~i~f~kg~~~~~Lk~~~~L~illtnTrv~RnTk~lV--------------------------- 247 (397)
T KOG1511|consen 201 G-IDNAVCTYGG-----LISFKKGVEIESLKHLPPLRILLTNTRVPRNTKALV--------------------------- 247 (397)
T ss_pred c-cchhhhccCc-----eEEeecCccceecccCCCceEEEEccccCccHHHHH---------------------------
Confidence 7 9999999999 5666554 6666765567999999999997755432
Q ss_pred hhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHH
Q 018058 151 EAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA 230 (361)
Q Consensus 151 ~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 230 (361)
..|+.... .++++++.+++ .+
T Consensus 248 -----------------------------a~Vr~~~~---------------kfPevi~~i~~---------------ai 268 (397)
T KOG1511|consen 248 -----------------------------AGVRELLE---------------KFPEVIKAIFD---------------AI 268 (397)
T ss_pred -----------------------------HHHHHHHH---------------hhhHHHHHHHH---------------HH
Confidence 11111110 01222221222 22
Q ss_pred hHHHhHhHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceE
Q 018058 231 AHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCV 308 (361)
Q Consensus 231 ~~~i~E~~rv~~~~~al~~~~--~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~v 308 (361)
..+.. +++..+.+.+ .+...-.++.++|..||..|..+ ||++|.+|.++...++.| +.+|+||||+|||+
T Consensus 269 d~is~------ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~al-GVsH~~le~v~~~t~k~g-i~sKLTGAGgGGc~ 340 (397)
T KOG1511|consen 269 DEISL------EAVWILQRENDEFSSPKEQKLEELIRINQDLLDAL-GVSHPSLELVCTTTRKLG-IHSKLTGAGGGGCV 340 (397)
T ss_pred HHHHH------HHHHHHhcccccCCCcHHHHHHHHHHHhHHHHHHh-CCCcHHHHHHHHHHHHhC-cceecccCCCCceE
Confidence 22222 2233333211 01112225999999999999988 999999999999999999 77899999999999
Q ss_pred EEEecCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-Ceeecc
Q 018058 309 VALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 360 (361)
Q Consensus 309 i~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 360 (361)
++|.+++..++.+..+++....++| .+|.+.-+. |++|.+
T Consensus 341 itlL~~~~~qe~i~~~ke~L~s~gf------------~v~~t~lGG~G~~v~s 381 (397)
T KOG1511|consen 341 ITLLKPGTEQEQIDKWKEELESHGF------------EVFETELGGPGVSVHS 381 (397)
T ss_pred EEEECCCCchHHHHHHHHHHHhcCc------------ceeeccCCCCceEEEe
Confidence 9999999888999999999887755 688888765 888764
No 19
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.96 E-value=3.8e-28 Score=257.75 Aligned_cols=213 Identities=17% Similarity=0.191 Sum_probs=160.9
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
.|++++|.|+||+|+|||||||++||++.|++.+++.++++++++++|..+|+.++.++|++||+++++|| +.++++
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG---~~~i~~ 801 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPG---VKLLQT 801 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCC---eEEEEe
Confidence 69999999999999999999999999999999999999999999999999999777778899999999999 446654
Q ss_pred CC-----CceeeecCCC------CceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchh
Q 018058 93 NP-----IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 161 (361)
Q Consensus 93 ~~-----~~~~~i~~p~------~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d 161 (361)
.+ ..+.+++.+. +-+++|++|++++++... +. +
T Consensus 802 ~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~i------------------V~------------------~ 845 (974)
T PRK13412 802 GAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKGI------------------LA------------------E 845 (974)
T ss_pred cCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHHH------------------HH------------------H
Confidence 43 1244454332 346999999986432211 00 0
Q ss_pred hhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHH
Q 018058 162 VEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 241 (361)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~ 241 (361)
+ ++.+.... +... .+.+++..+ +.
T Consensus 846 V-------------------v~~~~~~~----~~~~---------------------------~~l~~ig~L------a~ 869 (974)
T PRK13412 846 I-------------------VRSMFLNS----TAHL---------------------------QLLHEMKAH------AL 869 (974)
T ss_pred H-------------------HHHHHhCc----HHHH---------------------------HHHHHHHHH------HH
Confidence 0 00000000 0000 012222222 44
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhh-cCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecC-CcHHH
Q 018058 242 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQ 319 (361)
Q Consensus 242 ~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~-~~~~~ 319 (361)
++.++|.++| ++.||++|+++|+.++.+ -++|+|++|+|++.+++ |++|+|+||||+|||+++|+++ +..++
T Consensus 870 ea~~ALe~gD-----~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI~Lak~~~~a~~ 943 (974)
T PRK13412 870 DMYEAIQRGE-----FEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLYMVAKDPGAAER 943 (974)
T ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEEEEECChhhHHH
Confidence 5778898876 999999999999999988 58999999999999965 7999999999999999999954 56777
Q ss_pred HHHHHHH
Q 018058 320 FILNLKE 326 (361)
Q Consensus 320 ~~~~l~~ 326 (361)
+.+++++
T Consensus 944 I~~~L~~ 950 (974)
T PRK13412 944 IRKILTE 950 (974)
T ss_pred HHHHHHh
Confidence 7777765
No 20
>PLN02451 homoserine kinase
Probab=99.93 E-value=1.6e-24 Score=212.48 Aligned_cols=225 Identities=20% Similarity=0.246 Sum_probs=169.3
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHH-HHhhcCCeEEEE
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAI-SIMAKSGFAELI 90 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~-~~~Gg~~~~~~~ 90 (361)
+|++|+|.++||+++|||||||+++|++.+++++++.++++++++++|.++|. ..|.. +|+++ +++|| +.+.
T Consensus 133 ~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~h---~Dnva~a~~GG---~v~~ 206 (370)
T PLN02451 133 VGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGYH---ADNIAPALMGG---FVLI 206 (370)
T ss_pred CCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCCC---ccchhHhhcCC---EEEE
Confidence 58999999999999999999999999999999999999999999999999998 44542 78886 68998 3344
Q ss_pred e-cCCCceeeecCC--CCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhh
Q 018058 91 D-FNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (361)
Q Consensus 91 ~-~~~~~~~~i~~p--~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~ 167 (361)
. ..+..+.++++| +++.|++++|+++.+|.. +.+.+...
T Consensus 207 ~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~~---------------ar~~lp~~----------------------- 248 (370)
T PLN02451 207 RSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKK---------------MRAALPKE----------------------- 248 (370)
T ss_pred EecCCCeEEEeecCCCCCeEEEEEcCCCCccHHH---------------HHHHHhhh-----------------------
Confidence 3 344455566665 579999999987532211 11111100
Q ss_pred hhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHH
Q 018058 168 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 247 (361)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al 247 (361)
+.. . .+ +....|+..++.++
T Consensus 249 -----------------------~~~---------------------------------~---~~-v~~~~~~~~l~~al 268 (370)
T PLN02451 249 -----------------------IPM---------------------------------K---HH-VWNCSQAAALVAAI 268 (370)
T ss_pred -----------------------cch---------------------------------h---hH-HHHHHHHHHHHHHH
Confidence 000 0 00 00112344566788
Q ss_pred hcCCCchHHHHHHHHHHHHH--HHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecC-CcHHHHHHHH
Q 018058 248 SSNLSEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNL 324 (361)
Q Consensus 248 ~~~~~~~~~~~~lg~lm~~s--h~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~-~~~~~~~~~l 324 (361)
.++| ++.++++|++. |+..+ ..++|+++++++.+++.|++|++|||+| +|+++|++. +.++++.+++
T Consensus 269 ~~~d-----~~~l~~~m~nD~~~e~~r---~~~~P~l~~l~~~~~~~GA~ga~mSGSG--ptvfal~~~~~~a~~i~~~l 338 (370)
T PLN02451 269 LQGD-----AVLLGEALSSDKIVEPTR---APLIPGMEAVKKAALEAGAYGCTISGAG--PTAVAVIDDEEKGEEVGERM 338 (370)
T ss_pred HcCC-----HHHHHHHHHHHHHhHHHH---hhhCccHHHHHHHHHHCCCeEEEEEccc--hheEEEEcCHHHHHHHHHHH
Confidence 8775 99999999865 66666 3589999999999999999999999887 899999975 4788999999
Q ss_pred HHHHHhcccCCCcccCCCCcceEEEeeCCC-Ceeecc
Q 018058 325 KEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 360 (361)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 360 (361)
++.|.+... +.+.++++++++ |+++..
T Consensus 339 ~~~~~~~~~---------~~~~~~~~~~d~~Ga~v~~ 366 (370)
T PLN02451 339 VEAFRKAGN---------LKATASVKKLDRVGARLVE 366 (370)
T ss_pred HHHHHHhcC---------CCceEEEeccCCCCeEEEe
Confidence 888865432 467899999997 999864
No 21
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.92 E-value=2.8e-23 Score=195.52 Aligned_cols=218 Identities=26% Similarity=0.263 Sum_probs=167.2
Q ss_pred ceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHH-HHhhcCCeEEEEe-
Q 018058 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAI-SIMAKSGFAELID- 91 (361)
Q Consensus 14 g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~-~~~Gg~~~~~~~~- 91 (361)
+++++++++||.++|||||+|.+||.+.+++++++.+++++++.+++.++|. + -|+++ |++|| +.+..
T Consensus 77 ~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg-----H--pDNVapa~lGG---~~l~~~ 146 (299)
T COG0083 77 GVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG-----H--PDNVAPAVLGG---LVLVEE 146 (299)
T ss_pred cEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC-----C--CchHHHHhhCC---EEEEee
Confidence 3999999999999999999999999999999999999999999999999993 2 57775 89999 33443
Q ss_pred cCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 018058 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (361)
Q Consensus 92 ~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 171 (361)
..++.+.++++|.+|+++++.|+++. +| ++++++
T Consensus 147 ~~~~~~~~v~~~~~~~~v~~iP~~e~---sT------------~~aR~v------------------------------- 180 (299)
T COG0083 147 ESGIISVKVPFPSDLKLVVVIPNFEV---ST------------AEARKV------------------------------- 180 (299)
T ss_pred cCCceEEEccCCcceEEEEEeCCccc---cH------------HHHHHh-------------------------------
Confidence 35567778888889999999998853 23 122222
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCC
Q 018058 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (361)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~ 251 (361)
+++. |+.++. +....|+.-++.||.+++
T Consensus 181 --------------LP~~-~~~~da-------------------------------------V~n~s~~a~lv~al~~~~ 208 (299)
T COG0083 181 --------------LPKS-YSRKDA-------------------------------------VFNLSRAALLVAALLEGD 208 (299)
T ss_pred --------------cccc-CCHHHH-------------------------------------HHHHHHHHHHHHHHHcCC
Confidence 3332 332211 223457778889999875
Q ss_pred CchHHHHHHHHHHHH-HHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHHh
Q 018058 252 SEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 252 ~~~~~~~~lg~lm~~-sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
.+.+..+|.+ -|+.+|.. ..|.++++.+.+.+.|++|+-+|||| +++++++++...+...+.+ +.++.
T Consensus 209 -----~~l~~~~~~D~ihepyR~~---L~P~~~~v~~~a~~~gA~g~~lSGAG--PTi~al~~~~~~e~~~~~~-~~~~~ 277 (299)
T COG0083 209 -----PELLRAMMKDVIHEPYRAK---LVPGYAEVREAALEAGALGATLSGAG--PTVFALADESDAEKAAALL-EELYE 277 (299)
T ss_pred -----HHHHHHHhccccchhhhhh---hCccHHHHHHHHhhCCceEEEEecCC--CeEEEEeccchhhHHHHHH-HHHHH
Confidence 8888888887 69999975 78999999999999999999999999 9999999887344444444 44444
Q ss_pred cccCCCcccCCCCcceEEEeeCC-CCeeecc
Q 018058 331 SRIDRGVINNNDLGLYVFASKPS-SGAAKFK 360 (361)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~~ 360 (361)
+.+ .+.++++... +|++++.
T Consensus 278 ~~~----------~~~~~~~~~~~~G~~~v~ 298 (299)
T COG0083 278 QGI----------KGRVHILALDSDGARVVE 298 (299)
T ss_pred hCC----------cceEEEEeecCCcceEec
Confidence 443 5677776654 6988763
No 22
>PRK01212 homoserine kinase; Provisional
Probab=99.92 E-value=2e-23 Score=200.00 Aligned_cols=219 Identities=24% Similarity=0.250 Sum_probs=163.3
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEE-e
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI-D 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~-~ 91 (361)
+|++|+|.++||.++|||||||.++|++.+++++++.+++.++++++|.++|. + ..|...+++||. .+. +
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~-----~-~ddv~~~l~GG~---~~~~~ 150 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG-----H-PDNVAPALLGGL---VLALE 150 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-----C-HHHHHHHHhCCE---EEEEE
Confidence 58999999999999999999999999999999999999999999999999993 1 235556899993 344 3
Q ss_pred cCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 018058 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (361)
Q Consensus 92 ~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 171 (361)
..+..+.+++.|+++++++++|+.+. +|. .+.+.+
T Consensus 151 g~g~~~~~~~~~~~~~~vlv~p~~~~---sT~------------~a~~~l------------------------------ 185 (301)
T PRK01212 151 ENGVISVKIPVFDDLKWVVAIPNIEL---STA------------EARAVL------------------------------ 185 (301)
T ss_pred CCceEEEEecCCCCeEEEEEECCCcC---CHH------------HHHHhC------------------------------
Confidence 55566778877778999999997642 221 000000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCC
Q 018058 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (361)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~ 251 (361)
++. +... ..+.+..|+..+..++.++|
T Consensus 186 ---------------~~~-~~~~-------------------------------------~~~~~~~~~~~l~~al~~~d 212 (301)
T PRK01212 186 ---------------PKQ-YSLK-------------------------------------DAVFNSSRAALLVAALYTGD 212 (301)
T ss_pred ---------------cCc-CCHH-------------------------------------HHHHHHHHHHHHHHHHhhCC
Confidence 000 1000 00111235556778888765
Q ss_pred CchHHHHHHHHHHHH-HHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHHh
Q 018058 252 SEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 252 ~~~~~~~~lg~lm~~-sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
++.+++.|++ .|+.++.. .+|+++++++.+++.|++|++|||+| +|+++|++++..+++.+++++.| .
T Consensus 213 -----~~~~~~~~~~~~~~~~~~~---~~p~~~~i~~~~~~~Ga~g~~~SGsG--ptv~~l~~~~~~~~~~~~l~~~~-~ 281 (301)
T PRK01212 213 -----YELAGRAMKDVLHEPYRAK---LIPGFAEVRQAALEAGALGAGISGAG--PTVFALCDKEDAEKVADALQKAF-L 281 (301)
T ss_pred -----HHHHHHHhchhheHHhHHh---hCCCHHHHHHHHHHCCCeEEEEEchh--hheeEEeccccHHHHHHHHHHhh-c
Confidence 9999999854 35666432 56999999999999999999999877 99999998765588888888776 2
Q ss_pred cccCCCcccCCCCcceEEEeeCCC-Ceeec
Q 018058 331 SRIDRGVINNNDLGLYVFASKPSS-GAAKF 359 (361)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 359 (361)
.. .++.+++++|++ |++++
T Consensus 282 ~~----------~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 282 QG----------IEGFVHVLRLDTAGARVL 301 (301)
T ss_pred cC----------CCeEEEEeccCCCceEeC
Confidence 22 377899999997 99874
No 23
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.91 E-value=1.8e-22 Score=193.49 Aligned_cols=217 Identities=21% Similarity=0.243 Sum_probs=150.0
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhH-HHHHhhcCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQ-AISIMAKSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~-~~~~~Gg~~~~~~~~ 91 (361)
+|++++|.|+||+++|||||||+++|++.+++++++.+++.++++++|.++|. + .|+ .++++||. .+..
T Consensus 79 ~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~-----h--~Dnv~~~l~GG~---~~~~ 148 (302)
T TIGR00191 79 PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEG-----H--PDNVAPALLGGF---QLAF 148 (302)
T ss_pred CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcC-----C--cccHHHHhccCE---EEEE
Confidence 58999999999999999999999999999999999999999999999999993 1 565 56889993 3443
Q ss_pred cCCCceeeecCC--CCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 018058 92 FNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (361)
Q Consensus 92 ~~~~~~~~i~~p--~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~ 169 (361)
.+...+.++++| +++.+++++|+++. +|. .+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~vl~~p~~~~---sT~------------~a~~~l---------------------------- 185 (302)
T TIGR00191 149 VEDDKLEVLKIPIFSKLDWVLAIPNIEV---STA------------EARAVL---------------------------- 185 (302)
T ss_pred EcCCceEEEEeCCCCCEEEEEEECCCcc---cHH------------HHHHhC----------------------------
Confidence 333334454443 68999999998753 221 011111
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhc
Q 018058 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (361)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~ 249 (361)
++. +...+. +....++..++.++.+
T Consensus 186 -----------------p~~-~~~~~~-------------------------------------v~~~~~~~~l~~al~~ 210 (302)
T TIGR00191 186 -----------------PKA-YPRQDL-------------------------------------VFNLSHLAGLVHAIYQ 210 (302)
T ss_pred -----------------ccc-CCHHHH-------------------------------------HHHHHHHHHHHHHHHc
Confidence 000 110000 0001233335567776
Q ss_pred CCCchHHHHHHHHHHHHH--HHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHH
Q 018058 250 NLSEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 327 (361)
Q Consensus 250 ~~~~~~~~~~lg~lm~~s--h~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~ 327 (361)
++ ++ +++.+.+. |+.++. ..+|+++++++.+++.|++|++|||+| +|+++|++++...+.+.++.+.
T Consensus 211 ~~-----~~-l~~~~~~d~l~e~~~~---~l~p~l~~i~~~~~~~Ga~g~~lSGsG--ptv~al~~~~~~~~~~~~~~~~ 279 (302)
T TIGR00191 211 KK-----PD-LGAIMMKDRIHQPYRE---SLIPNLFKIKQAALEKGAYGITISGSG--PTILAMADEEFAEQKEQDLLEV 279 (302)
T ss_pred CC-----HH-HHHHHcccccchhhHh---hhCCCHHHHHHHHHHCCCeEEEEEchh--hhheEEecchhhHHHHHHHHHH
Confidence 53 44 55565544 677774 479999999999999999999999888 9999999876444333333333
Q ss_pred HHhcccCCCcccCCCCcceEEEeeCCC-Ceee
Q 018058 328 FYQSRIDRGVINNNDLGLYVFASKPSS-GAAK 358 (361)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 358 (361)
+++.. .++.++++++++ |+++
T Consensus 280 ~~~~~----------~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 280 LHKQG----------IEGTVHVLDFDNDGARV 301 (302)
T ss_pred HHhcC----------CCeEEEEcccCCCCeEe
Confidence 33322 367899999987 9886
No 24
>PTZ00299 homoserine kinase; Provisional
Probab=99.89 E-value=1.3e-21 Score=189.22 Aligned_cols=223 Identities=22% Similarity=0.194 Sum_probs=162.7
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHhccccCCCCCchhHH-HHHhhcCCeEE
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVP---KKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAE 88 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~---~~ela~la~~~E~~~g~~~G~~D~~-~~~~Gg~~~~~ 88 (361)
+|++++|.++||.++|||||||.+||.+.+++++++.+++ .++++++|.++| | + .|++ .+++||. .
T Consensus 81 ~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~E---G--H--pDNVapal~GG~---~ 150 (336)
T PTZ00299 81 PPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFE---G--H--PDNAAPAIYGGI---Q 150 (336)
T ss_pred CceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhc---C--C--cccHHHHHhCCE---E
Confidence 5899999999999999999999999999999999999995 899999999998 2 1 6844 5899994 2
Q ss_pred EEec-C--CCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 018058 89 LIDF-N--PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (361)
Q Consensus 89 ~~~~-~--~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~ 165 (361)
.... . .....+++.|+++.++++.|++.- +.+|. .+
T Consensus 151 ~~~~~~~ge~~~~~i~~~~~~~~vv~iP~~~~-~~sT~------------~a---------------------------- 189 (336)
T PTZ00299 151 LVYKKDNGRFLTYRVPTPPNLSVVLFVPHNKM-KANTH------------VT---------------------------- 189 (336)
T ss_pred EEEecCCCceEEEecCCCCCeEEEEEECCCCc-cccHH------------HH----------------------------
Confidence 3332 2 233456777778999999997620 01220 11
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHH
Q 018058 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 245 (361)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~ 245 (361)
|++++++ +..+ ..+....|+..++.
T Consensus 190 -----------------R~vLP~~-v~~~-------------------------------------dav~n~~~~~~lv~ 214 (336)
T PTZ00299 190 -----------------RNLIPTS-VSLE-------------------------------------DAVFNISRTSILVL 214 (336)
T ss_pred -----------------HhhCccc-CcHH-------------------------------------HHHHhhhHHHHHHH
Confidence 1122221 2111 01112234455778
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecC-----------
Q 018058 246 TVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE----------- 314 (361)
Q Consensus 246 al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~----------- 314 (361)
+|.+++ ++.+..+.+..|+.+|.. -..|+++.+.+.+.+.|++|+-||||| +++++|++.
T Consensus 215 al~~~d-----~~ll~~~~D~lhep~R~~--~liP~~~~v~~~~~~~Ga~g~~lSGSG--PTv~al~~~~~~~~~~~~~~ 285 (336)
T PTZ00299 215 ALSTGD-----LRMLKSCSDKLHEQQRSD--ALFPHFRPCVKAAREAGAHYAFLSGAG--PSVCALVGGRHGDPLTQPRE 285 (336)
T ss_pred HHHhCC-----HHHHHhchhcccCccccc--ccCccHHHHHHHHHHCCCeEEEEEchh--hhheEEeccccccccccccc
Confidence 888875 888866434478877741 268999999999999999999999998 999999973
Q ss_pred -CcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-Ceeecc
Q 018058 315 -SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 360 (361)
Q Consensus 315 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 360 (361)
...+++.+++++.|.+.. +.+.+++++++. |+++.+
T Consensus 286 ~~~~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~G~~~~~ 323 (336)
T PTZ00299 286 ERKAESVAEAMIKAAEAVG----------VAGRVIITQPSDQGVHLVG 323 (336)
T ss_pred hhHHHHHHHHHHHHHHHcC----------CceEEEEccCCCCCcEEEe
Confidence 246789999988886544 488999999997 999864
No 25
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.88 E-value=7.2e-21 Score=182.33 Aligned_cols=213 Identities=14% Similarity=0.131 Sum_probs=148.2
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++++|.|+||+++|||||||.++|++.+++++++.++++++++++|.++| .|..++++|| +.+...
T Consensus 82 ~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig---------~dv~~~~~GG---~~~~~~ 149 (300)
T PRK03188 82 PDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG---------SDVPFALLGG---TALGTG 149 (300)
T ss_pred CCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCC---eEEEEe
Confidence 5899999999999999999999999999999999999999999999999986 5777788998 445554
Q ss_pred CCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~ 172 (361)
+...+.++..++++.++++.++.. .+|. ..| +.+... +
T Consensus 150 ~g~~~~~~~~~~~~~~~lv~p~~~---~sT~-~~~-----------~~l~~~---------------~------------ 187 (300)
T PRK03188 150 RGEQLAPVLARGTFHWVLAFADGG---LSTP-AVF-----------RELDRL---------------R------------ 187 (300)
T ss_pred cCCEEEECCCCCCcEEEEEeCCCC---CCHH-HHH-----------Hhchhh---------------h------------
Confidence 444556665555666666666542 1221 000 000000 0
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCCC
Q 018058 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (361)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~ 252 (361)
... . +.. ..++..+..++.++|
T Consensus 188 --------------~~~----------------~-------------------~~~--------~~~~~~~~~al~~~d- 209 (300)
T PRK03188 188 --------------EAG----------------D-------------------PPR--------LGEPDPLLAALRAGD- 209 (300)
T ss_pred --------------ccc----------------c-------------------ccc--------cccHHHHHHHHHcCC-
Confidence 000 0 000 012344667788775
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecC-CcHHHHHHHHHHHHHhc
Q 018058 253 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQS 331 (361)
Q Consensus 253 ~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~-~~~~~~~~~l~~~~~~~ 331 (361)
++.+++.|.+..+..+- -.+|+++++++.+++.|++|++|||+| +++++|+++ +.++++.+.+++ .
T Consensus 210 ----~~~l~~~~~n~le~~~~---~~~p~l~~l~~~~~~~Galga~lSGsG--~tv~~l~~~~~~~~~~~~~l~~----~ 276 (300)
T PRK03188 210 ----PAQLAPLLGNDLQAAAL---SLRPSLRRTLRAGEEAGALAGIVSGSG--PTCAFLCADADSAVDVAAALSG----A 276 (300)
T ss_pred ----HHHHHHHhhCcCHHHHH---HhCchHHHHHHHHHHCCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHh----c
Confidence 99999998653333221 149999999999999999999999888 789999976 345666666644 2
Q ss_pred ccCCCcccCCCCcceEEEeeCCC-Ceeecc
Q 018058 332 RIDRGVINNNDLGLYVFASKPSS-GAAKFK 360 (361)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 360 (361)
+ ....++++++.+ |++|++
T Consensus 277 g----------~~~~~~~~~~~~~~~~~~~ 296 (300)
T PRK03188 277 G----------VCRTVRVATGPVPGARVVS 296 (300)
T ss_pred C----------cceeEEEeeccccceEecc
Confidence 1 245788877664 999875
No 26
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=1.8e-21 Score=187.52 Aligned_cols=223 Identities=17% Similarity=0.178 Sum_probs=155.0
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++|+|.++||.++|||||||+++|++.+++++++.+++.++++++|.++| .|..++++||. .+...
T Consensus 85 ~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~GG~---~~~~~ 152 (312)
T PRK02534 85 GGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELG---------SDVPFCIAGGT---QLCFG 152 (312)
T ss_pred CCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCcEEeECCe---EEEEC
Confidence 5899999999999999999999999999999999999999999999999987 36677889983 34333
Q ss_pred CCCceeeecCCCCceEEEE-ecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 018058 93 NPIRTTDVQLPAGGTFVVA-HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~-~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 171 (361)
++..+.+++.|+++.++++ +|+... +|. .+.+.+++
T Consensus 153 ~g~~~~~~~~~~~~~~vv~~~p~~~~---~T~------------~a~~~~~~---------------------------- 189 (312)
T PRK02534 153 RGEILEPLPDLDGLGVVLAKYPSLSV---STP------------WAYKTYRQ---------------------------- 189 (312)
T ss_pred CCCEeEECCCCCCcEEEEEECCCCCc---cHH------------HHHHHHhh----------------------------
Confidence 4445677777778999887 788743 221 01000100
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCC
Q 018058 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (361)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~ 251 (361)
.+++. +...+ ...+. +....|...+..++.++|
T Consensus 190 -------------~~~~~-~~~~~-----------------------------~~~~~----~~~~~~~~~l~~al~~~d 222 (312)
T PRK02534 190 -------------QFGDT-YLSDE-----------------------------EDFEQ----RRQALRSGPLLQAISAKD 222 (312)
T ss_pred -------------hcccc-cccCc-----------------------------ccccc----cccccchhHHHHhhhccC
Confidence 00000 00000 00000 111123334567777665
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH-hCCCceeEeeccCCCceEEEEecCC-cHHHHHHHHHHHHH
Q 018058 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQFY 329 (361)
Q Consensus 252 ~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~-~~Ga~Gak~sGaG~GG~vi~L~~~~-~~~~~~~~l~~~~~ 329 (361)
++.+++.| |+.++....-..|+++++++.++ +.|++|+.|||+| +|+++|++.. .++++.+++++.+.
T Consensus 223 -----~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSGsG--ptv~~l~~~~~~a~~~~~~l~~~~~ 292 (312)
T PRK02534 223 -----PPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSLPGCLGTMMSGSG--PTCFALFESQEQAEQALEQVREAFA 292 (312)
T ss_pred -----HHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhccCCCeeEEECcC--cceEEEeCCHHHHHHHHHHHHHHhc
Confidence 88888766 55666553336899999999888 8999999999777 9999999763 67778788866543
Q ss_pred hcccCCCcccCCCCcceEEEeeCCC-Ceeec
Q 018058 330 QSRIDRGVINNNDLGLYVFASKPSS-GAAKF 359 (361)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 359 (361)
. ....++++++++ |++|-
T Consensus 293 ~------------~~~~v~i~~~~n~G~~v~ 311 (312)
T PRK02534 293 D------------PGLDAWVCQFISHGIQLE 311 (312)
T ss_pred c------------CceEEEEEEecCCCceec
Confidence 2 133688999887 99873
No 27
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.87 E-value=9.7e-21 Score=177.85 Aligned_cols=99 Identities=23% Similarity=0.176 Sum_probs=82.5
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccc--CCCCCchhHHHHHhhcCCeEEEE
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI--GTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~--g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
+|+++++.++||+++|||||||+++|++.+++.+++.+++++++++++.++|+.. +..+|.+|++++++|| +++.
T Consensus 63 ~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG---~~~~ 139 (261)
T TIGR01920 63 DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGG---IVIT 139 (261)
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCC---EEEE
Confidence 6899999999999999999999999999999999999999999999999999843 3567889999999999 5566
Q ss_pred ecCCCcee-eecCCCCceEEEEecCC
Q 018058 91 DFNPIRTT-DVQLPAGGTFVVAHSLA 115 (361)
Q Consensus 91 ~~~~~~~~-~i~~p~~~~~ll~~s~~ 115 (361)
+.++.... +.++| +..+++++|+.
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 140 DNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred eCCCceEEEecCCC-CceEEEEECCC
Confidence 66554333 33433 45788888865
No 28
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=3.3e-21 Score=183.37 Aligned_cols=188 Identities=16% Similarity=0.178 Sum_probs=138.1
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++++|.++||+++|||||||+++|++.+++++++.++++++++++|.++| .|..++++|| +.+.+.
T Consensus 83 ~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~Gg---~~~~~~ 150 (286)
T PRK00128 83 QGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIG---------SDVPFCIYGG---TALATG 150 (286)
T ss_pred CCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC---------CCCCeEeeCC---eEEEec
Confidence 5899999999999999999999999999999999999999999999999987 4777889998 345554
Q ss_pred CCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~ 172 (361)
+...+.+++.+++..+++++|+... +|. ..| + .++
T Consensus 151 ~g~~~~~~~~~~~~~~vv~~p~~~~---~T~-~~~-----------~------------------~~~------------ 185 (286)
T PRK00128 151 RGEKITPLKSPPSCWVVLAKPDIGV---STK-DVY-----------K------------------NLD------------ 185 (286)
T ss_pred CCcccccCCCCCCcEEEEEcCCCCC---CHH-HHH-----------h------------------cCc------------
Confidence 4444556665567789999998642 221 000 0 000
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCCC
Q 018058 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (361)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~ 252 (361)
.. +.. ...+..+..++.++|
T Consensus 186 ---------------~~---------------------------------------~~~-----~~~~~~~~~~l~~~d- 205 (286)
T PRK00128 186 ---------------LD---------------------------------------KIS-----HPDTEKLIEAIEEGD- 205 (286)
T ss_pred ---------------cc---------------------------------------ccc-----CcchHHHHHHHhcCC-
Confidence 00 000 001233456677665
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCC-cHHHHHHHHHHH
Q 018058 253 EEDKLKKLGDLMNDSHHSCSVLYEC-SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQ 327 (361)
Q Consensus 253 ~~~~~~~lg~lm~~sh~~lr~~~~v-s~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~-~~~~~~~~l~~~ 327 (361)
++.++++|.+..+.+ .+ .+|+++++++.+++.|++|++|||+| ||+++|++.+ .++++.+.+++.
T Consensus 206 ----~~~~~~~~~n~l~~~----~~~~~p~l~~l~~~~~~~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~~~ 272 (286)
T PRK00128 206 ----YQGICANMGNVLENV----TLKKYPEIAKIKERMLKFGADGALMSGSG--PTVFGLFDDESRAQRIYNGLKGF 272 (286)
T ss_pred ----HHHHHHhccCcHHHH----HHhhChHHHHHHHHHHhcCCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhHhh
Confidence 999999886433333 33 48999999999999999999999888 9999999763 567777777653
No 29
>PRK01123 shikimate kinase; Provisional
Probab=99.86 E-value=3.6e-20 Score=175.97 Aligned_cols=99 Identities=16% Similarity=0.076 Sum_probs=81.4
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccc-C-CCCCchhHHHHHhhcCCeEEEE
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI-G-TQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~-g-~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
+||++++.|+||+++|||||||+++|++.|++++++.++++++++++|.++|+.. + ..++.+|++++++|| +++.
T Consensus 74 ~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG---~~~~ 150 (282)
T PRK01123 74 YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGG---VTVT 150 (282)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCC---EEEE
Confidence 5899999999999999999999999999999999999999999999999999843 3 356678999999999 4455
Q ss_pred ecCCC-ceeeecCCCCceEEEEecCCc
Q 018058 91 DFNPI-RTTDVQLPAGGTFVVAHSLAE 116 (361)
Q Consensus 91 ~~~~~-~~~~i~~p~~~~~ll~~s~~~ 116 (361)
+.... ...+++ +++.|++++|+.+
T Consensus 151 ~~~~~~~~~~~~--~~~~~vv~~p~~~ 175 (282)
T PRK01123 151 DNREMKLLKRDE--VELDVLVLIPPEG 175 (282)
T ss_pred cCCCceEEEEec--CCcEEEEEECCCC
Confidence 53322 223333 3589999999864
No 30
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.85 E-value=3e-19 Score=178.05 Aligned_cols=243 Identities=15% Similarity=0.121 Sum_probs=152.7
Q ss_pred CcceeEEEEeCC-------------------CC--------CCCCChHHHHHHHHHHHHHHHhCCCC-------------
Q 018058 12 FQLFNHINSLFF-------------------NL--------GSGLSSSTAFVCSSTVALMAAFGVEV------------- 51 (361)
Q Consensus 12 ~~g~~i~i~s~i-------------------P~--------g~GLGSSaA~~va~~~al~~l~~~~l------------- 51 (361)
+++++|+|.|+. +. +.|||||||++||++.||+.+++..+
T Consensus 111 l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~ 190 (454)
T TIGR01219 111 LQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCS 190 (454)
T ss_pred cCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHHHHHHHHHHHHHhCCccccccccccccccc
Confidence 678999998877 21 69999999999999999999999876
Q ss_pred CHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEEecCCC----------------------------ceeeecC
Q 018058 52 PKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPI----------------------------RTTDVQL 102 (361)
Q Consensus 52 ~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~~~~~~----------------------------~~~~i~~ 102 (361)
+++.+.++|+.+|. ..|.++++.|.++++||| +.|..|.+- .++++++
T Consensus 191 ~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGg---i~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~l 267 (454)
T TIGR01219 191 DLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSL 267 (454)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCc---eEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeeccC
Confidence 78899999999997 457666779999999999 567776541 3346667
Q ss_pred CCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHH
Q 018058 103 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAV 182 (361)
Q Consensus 103 p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 182 (361)
|+++++++.+++.+++|.......-..|....+....++. .+
T Consensus 268 P~~l~Llvgdtg~~ssT~~lV~~V~~~~~~~p~~s~~i~~--------------------------------------~l 309 (454)
T TIGR01219 268 PPLMNLFMGDPGGGSSTPSMVGKVKKWQMSDPEESRENWQ--------------------------------------NL 309 (454)
T ss_pred CCCCEEEEEcCCCCcCcHHHHHHHHHHHHHCHHHHHHHHH--------------------------------------HH
Confidence 7789999999998876655432221111100000000000 00
Q ss_pred HHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCCC---chHHHHH
Q 018058 183 KEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS---EEDKLKK 259 (361)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~---~~~~~~~ 259 (361)
.... +.+...+.+ +..+.++.+ ..|. .+.+.+.++.. ...++..
T Consensus 310 ~~aN-------~~~~~~l~~-l~~~~~~~~------------~~y~-------------~~~~~l~~~~~~~~~~~~~~~ 356 (454)
T TIGR01219 310 SDAN-------LELETKLND-LSKLAKDHW------------DVYL-------------RVIKVLTSEKCVLHATEELLE 356 (454)
T ss_pred HHHH-------HHHHHHHHh-hhhhhcccc------------chhh-------------hhhhhhccccchhcccccHHH
Confidence 0000 000000000 000000000 0010 11122322200 0014778
Q ss_pred HHHHHHHHHHHhhhhc-----CCCChhHHHHHHHHHhC-CCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHHh
Q 018058 260 LGDLMNDSHHSCSVLY-----ECSCPELEELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 260 lg~lm~~sh~~lr~~~-----~vs~peld~lv~~a~~~-Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
+.+.|.++...||.+. .+.+|++-+|++.+.+. ||+||+.+|||+|.|+++|+..+. ++++.+.+.+..
T Consensus 357 i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~~ 431 (454)
T TIGR01219 357 AREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWSS 431 (454)
T ss_pred HHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHhh
Confidence 8888888888887663 46799999999999884 899999999999999999986643 244555555543
No 31
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.83 E-value=1.3e-18 Score=168.21 Aligned_cols=221 Identities=16% Similarity=0.140 Sum_probs=151.7
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|+++.|.++||.++|||||||+++|++.|++.+++.+++.+++++++.+.|. + ..|.+++++|| +++...
T Consensus 81 ~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~-----s-~~~va~~~~GG---~vv~~G 151 (324)
T TIGR00144 81 EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGT-----S-GIGVASFEDGG---FIVDGG 151 (324)
T ss_pred CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCC-----C-ccceeeeeeCC---EEEECC
Confidence 58999999999999999999999999999999999999999999999998772 2 35677789999 333311
Q ss_pred ---C---------------CCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhh
Q 018058 93 ---N---------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAIS 154 (361)
Q Consensus 93 ---~---------------~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~ 154 (361)
. +..+.++++| +|+|+++.|+.+ .+ .+ .|- .+++++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~-~t-~~------are------~~~lp~~---------- 206 (324)
T TIGR00144 152 HSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID-SV-SG------RRE------VNIFQKY---------- 206 (324)
T ss_pred cccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC-CC-Cc------HHH------HHHHHhc----------
Confidence 1 1124556666 999999999864 21 11 111 1112110
Q ss_pred ccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHH
Q 018058 155 KVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVY 234 (361)
Q Consensus 155 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i 234 (361)
.+++.+++
T Consensus 207 ----------------------------------~~i~~~dv-------------------------------------- 214 (324)
T TIGR00144 207 ----------------------------------CPVPLRDV-------------------------------------- 214 (324)
T ss_pred ----------------------------------CCCCHHHH--------------------------------------
Confidence 01111111
Q ss_pred hHhHHH--HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhc--CCCChhHHHHHHHHHhCCCceeEeeccCCCceEEE
Q 018058 235 SEAKRV--HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY--ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 310 (361)
Q Consensus 235 ~E~~rv--~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~--~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~ 310 (361)
.+..|+ .+++.++.++| ++.|++.|++.+..-.+.. +.-.|.+..+++.+.+ ++|+-|||+| +||++
T Consensus 215 ~~~~~~~l~~l~~al~~~d-----~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~--a~g~~iSGsG--PTv~a 285 (324)
T TIGR00144 215 ERICHLILMKMMPAVVEGD-----LDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS--APGAGMSSFG--PTVYA 285 (324)
T ss_pred HHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh--ccCceecCCC--CeEEE
Confidence 111222 34578888765 9999999987543332211 2346777777777654 4899999655 99999
Q ss_pred EecCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-Ceeec
Q 018058 311 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 359 (361)
Q Consensus 311 L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 359 (361)
|++.+ .+++.+++++.|.... +.+.++++++++ |++|.
T Consensus 286 l~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 286 VTDEK-PGNIAGAVADIFGPYG----------VYGRIIVTKARNRGAFII 324 (324)
T ss_pred EecCc-hHHHHHHHHHHhhhCC----------CceEEEEEccCCCCCEeC
Confidence 99754 7778888887664332 478899999996 99873
No 32
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.81 E-value=7.2e-19 Score=167.89 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=78.9
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
.+|+++.|.++||+++|||||||.++|++.+++++++.++++++++++|.++| .|...+++|| ..+..
T Consensus 84 ~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg---------~Dv~~~~~gg---~~~~~ 151 (293)
T TIGR00154 84 LDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLG---------ADVPFFVSGH---AAFAT 151 (293)
T ss_pred CCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEEECC---eEEEE
Confidence 35899999999999999999999999999999999999999999999999986 5878888998 33444
Q ss_pred cCCCceeeecCCCCceEEEEecCCch
Q 018058 92 FNPIRTTDVQLPAGGTFVVAHSLAES 117 (361)
Q Consensus 92 ~~~~~~~~i~~p~~~~~ll~~s~~~~ 117 (361)
.....+.+++.++++.+++++|+++.
T Consensus 152 g~ge~~~~l~~~~~~~~vl~~p~~~~ 177 (293)
T TIGR00154 152 GVGEIITPFEDPPEKWVVIAKPHVSI 177 (293)
T ss_pred ecCcEEEECCCCCCcEEEEEcCCCCc
Confidence 44444556665567889999998753
No 33
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.79 E-value=2.1e-18 Score=164.23 Aligned_cols=193 Identities=13% Similarity=0.135 Sum_probs=131.7
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHH-hhcCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISI-MAKSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~-~Gg~~~~~~~~ 91 (361)
+|++++|.++||+++|||||||.++|++.+++++++.+++.++++++|.++| .|..+++ +|| +.+..
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig---------~Dvp~~l~~gg---~~~~~ 149 (287)
T PRK14616 82 KGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLG---------ADVPYFLEMKG---LAYAT 149 (287)
T ss_pred CCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEeccCC---cEEEE
Confidence 6899999999999999999999999999999999999999999999999998 4533333 355 22333
Q ss_pred cCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 018058 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (361)
Q Consensus 92 ~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 171 (361)
.....+++++.+..+.+++++|+++- +|. .+.+.+.+.
T Consensus 150 g~g~~~~~~~~~~~~~~vvv~P~~~v---sT~------------~a~~~l~~~--------------------------- 187 (287)
T PRK14616 150 GIGDELEDLQLTLPFHIVTVFPEEHI---STV------------WAYKNFYRR--------------------------- 187 (287)
T ss_pred EcCceeEECCcCCCcEEEEECCCCCc---CHH------------HHHHHhhhh---------------------------
Confidence 33334555554445789999998753 331 011111000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCC
Q 018058 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (361)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~ 251 (361)
+. . ...++..++.++...
T Consensus 188 -------------------~~----------------------------------~--------~~~~~~~l~~~l~~~- 205 (287)
T PRK14616 188 -------------------FE----------------------------------R--------ERPDLKTLVRRLCLD- 205 (287)
T ss_pred -------------------cc----------------------------------c--------CCchHHHHHHHHhcC-
Confidence 00 0 000111122333321
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecC-CcHHHHHHHHHHHHHh
Q 018058 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQ 330 (361)
Q Consensus 252 ~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~-~~~~~~~~~l~~~~~~ 330 (361)
++++.++.++++- +..+.. ..|+++++.+.+++.|++|+.|||+| +|+++|+++ +.++++.+.+++.|..
T Consensus 206 ---~~~~l~~~~~nD~-e~~~~~---l~p~l~~v~~~~~~~Galg~~lSGSG--ptv~al~~~~~~a~~i~~~l~~~~~~ 276 (287)
T PRK14616 206 ---GDTSVLPAFENDF-ESAVFD---HYPAVRKVKDDLLEAGSFFASLSGSG--SAVFGLFENEADAEAAAEMMRARYRT 276 (287)
T ss_pred ---CHHHHHHHhcCcc-HHHHHH---hChHHHHHHHHHHhCCCCeEEEeccc--ccceEEeCCHHHHHHHHHHhHHhCcc
Confidence 1355565555544 444432 57999999999999999999999998 899999977 4778888888877653
No 34
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=2.1e-18 Score=163.78 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=78.0
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++++|.++||+++|||||||.++|++.+++++++.+++++++.++|..+| .|...+++||. .+...
T Consensus 84 ~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G---------~Dv~~~l~gg~---~~~~g 151 (280)
T PRK14614 84 VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLG---------ADVPFFIFKKT---ALAEG 151 (280)
T ss_pred CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceeeeCCc---EEEEE
Confidence 5899999999999999999999999999999999999999999999998765 48877888873 34444
Q ss_pred CCCceeeecCCCCceEEEEecCCch
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~~ 117 (361)
+...+.+++.++++.+++++|+++.
T Consensus 152 ~ge~~~~l~~~~~~~ivl~~p~~~~ 176 (280)
T PRK14614 152 IGDKLTAVEGVPPLWVVLVNPGLHV 176 (280)
T ss_pred cCceeEECCCCCCcEEEEECCCCCC
Confidence 4445666665567889999998854
No 35
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.77 E-value=3.6e-17 Score=150.92 Aligned_cols=228 Identities=18% Similarity=0.196 Sum_probs=160.2
Q ss_pred cCcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
...|++|.|.+++|.+.||||.++++.|+..+++++++++++.+|||....+.-. +| .-.++.-+||+ .+
T Consensus 68 ~~~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG~t-----Sg-iGv~afe~GGF----IV 137 (312)
T COG1907 68 VGEGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRGGT-----SG-IGVYAFEYGGF----IV 137 (312)
T ss_pred ccCceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccCCc-----cc-eeEEEEEECCE----EE
Confidence 4478999999999999999999999999999999999999999999988877542 11 22333455662 22
Q ss_pred ecC------C--Cc--eeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccch
Q 018058 91 DFN------P--IR--TTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 160 (361)
Q Consensus 91 ~~~------~--~~--~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~ 160 (361)
|.. | .. +-+..||.+|+|+++.|..++. .+..| |. .++.+.-+
T Consensus 138 DGGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg-------~~~~~--E~----~if~~~~p-------------- 190 (312)
T COG1907 138 DGGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERG-------VSGRR--EV----DIFKKYCP-------------- 190 (312)
T ss_pred ECCcccCcccCCCCceeeeecCCCceEEEEEecCCCcc-------ccchH--HH----HHHHhcCC--------------
Confidence 321 1 11 4466789899999999987631 11111 11 11111100
Q ss_pred hhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHH
Q 018058 161 DVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 240 (361)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv 240 (361)
... +..+++.|.+ .
T Consensus 191 ------------------------------~p~-------------------------------~~~~~ls~~v-----L 204 (312)
T COG1907 191 ------------------------------VPL-------------------------------EEVGELSHRV-----L 204 (312)
T ss_pred ------------------------------CCH-------------------------------HHHHHHHHHH-----H
Confidence 000 1122233322 2
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHh---hhhc--CCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCC
Q 018058 241 HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSC---SVLY--ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 315 (361)
Q Consensus 241 ~~~~~al~~~~~~~~~~~~lg~lm~~sh~~l---r~~~--~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~ 315 (361)
..+..|+... |++.||+.|++-|... .+.. +..|+.+..+++.+.+. +|||-+| .||+++++++++.
T Consensus 205 m~mmPavvE~-----Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqS--SwGPtvY~i~d~~ 276 (312)
T COG1907 205 MKMMPAVVER-----DIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQS--SWGPTVYGIVDSR 276 (312)
T ss_pred HHHhHHHHhh-----CHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-ccccccc--ccCCEEEEecccc
Confidence 3456666644 5999999999998877 4332 46789999999999998 7999998 8999999999887
Q ss_pred cHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-Ceeec
Q 018058 316 IDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 359 (361)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 359 (361)
....+...+.+.+.++. +...+++++|.+ ||.|.
T Consensus 277 ~~~~~~~~~~~~~~~~g----------~~gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 277 EAGSVVRKLIDILLEEG----------IGGEVFVTKARNRGAEIL 311 (312)
T ss_pred ccchHHHHHHHHHHhcC----------CceEEEEeccCCCCceec
Confidence 77766666766665544 478999999997 99875
No 36
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.77 E-value=7.1e-18 Score=160.81 Aligned_cols=93 Identities=10% Similarity=0.031 Sum_probs=78.9
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++++|.++||+++|||||||.+||++.+++++++.+++.++++++|.++| .|...+++||. .+...
T Consensus 89 ~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig---------~dv~~~l~gg~---~~~~g 156 (290)
T PRK14608 89 PPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLG---------ADVPVCLDSRP---LIMRG 156 (290)
T ss_pred CceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCCe---EEEEe
Confidence 6899999999999999999999999999999999999999999999999986 58888999983 34444
Q ss_pred CCCceeeecCCCCceEEEEecCCch
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~~ 117 (361)
....+.+++.++++.+++++|+++.
T Consensus 157 ~g~~~~~l~~~~~~~~vv~~p~~~~ 181 (290)
T PRK14608 157 IGEELTPLPGLPSLPAVLVNPGVPV 181 (290)
T ss_pred cCCEeEECCCCCCcEEEEECCCCCc
Confidence 4445666654457889999998853
No 37
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.76 E-value=1.9e-17 Score=158.23 Aligned_cols=93 Identities=15% Similarity=0.014 Sum_probs=75.4
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++++|.++||+++|||||||.++|++.+++++++.+++.++++++|.++| .|...++.||. .+...
T Consensus 87 ~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~g---------aDvPffl~gg~---a~~~G 154 (296)
T PRK14615 87 PPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVG---------ADVPFFLHNVP---CRATG 154 (296)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC---------CCCeeeccCCC---EEEEe
Confidence 6899999999999999999999999999999999999999999999999988 46555555653 23433
Q ss_pred CCCceeeecC-CCCceEEEEecCCch
Q 018058 93 NPIRTTDVQL-PAGGTFVVAHSLAES 117 (361)
Q Consensus 93 ~~~~~~~i~~-p~~~~~ll~~s~~~~ 117 (361)
....++++++ ++++.+++++|+++-
T Consensus 155 ~Ge~~~~l~~~~~~~~~vl~~P~~~v 180 (296)
T PRK14615 155 IGEILTPVALGLSGWTLVLVCPEVQV 180 (296)
T ss_pred eEeEEEECCCCCCCcEEEEECCCCCc
Confidence 3445666664 346789999998853
No 38
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.75 E-value=6.3e-17 Score=153.23 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=77.5
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++++|.++||+++|||||||.+||++.+++++++.+++.++++++|.++| .|...+++|| ..+...
T Consensus 79 ~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~---------~D~~~~~~Gg---~~~~~~ 146 (275)
T PRK14611 79 INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSIS---------ADAPFFLKGG---FALGRG 146 (275)
T ss_pred CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------CCCCeeecCC---eEEEec
Confidence 5899999999999999999999999999999999999999999999999988 4766677887 445554
Q ss_pred CCCceeeecCCCCceEEEEecCCch
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~~ 117 (361)
....+.+++.+.++.+++++|+++.
T Consensus 147 ~g~~~~~~~~~~~~~~vv~~p~~~~ 171 (275)
T PRK14611 147 IGDKLEFLEKPISREITLVYPNIKS 171 (275)
T ss_pred cCceeEECCcCCCcEEEEEeCCCCC
Confidence 4444556655456679999998864
No 39
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.74 E-value=5.9e-17 Score=154.94 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=131.5
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-KEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~-~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
+|++|+|.++||+++|||||||.+++++.+++..++ ++. +++.++|.++| .|..+++.|+ ..+..
T Consensus 92 ~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~--l~~~e~L~~lA~~lG---------aDvP~~l~G~---~a~~~ 157 (297)
T PRK14613 92 PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRN--FFTSDEMQVFAKEIG---------SDVPFFLGEG---HAFVT 157 (297)
T ss_pred CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHhC---------CccchhhcCC---eEEEe
Confidence 689999999999999999999999888888877554 454 67777999986 5855655554 34555
Q ss_pred cCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 018058 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (361)
Q Consensus 92 ~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 171 (361)
..+..+.++++|+.+. +++.|+++- +|. .+.+.+.....
T Consensus 158 g~Ge~~~~l~~~~~~~-vlv~P~~~v---sT~------------~a~~~l~~~~~------------------------- 196 (297)
T PRK14613 158 GKGEIMEEIEVHKGQG-ILALTPQVM---NTG------------EMYALLKKPLQ------------------------- 196 (297)
T ss_pred cCCcEEEEcCCCCCeE-EEEECCCCc---ChH------------HHHHhcchhhc-------------------------
Confidence 5555667777665554 678888753 331 11111100000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCC
Q 018058 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (361)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~ 251 (361)
.... .. .. +.+...++.++.+++
T Consensus 197 -----------------~~~~------------~~-------------------~~---------~~~~~~~~~al~~~~ 219 (297)
T PRK14613 197 -----------------ESAS------------QK-------------------NG---------NTLSEDLISSLKVGD 219 (297)
T ss_pred -----------------cccc------------cc-------------------cc---------cccHHHHHHHHHcCC
Confidence 0000 00 00 011223456676664
Q ss_pred CchHHHHHHHHHH-HHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecC-CcHHHHHHHHHHHHH
Q 018058 252 SEEDKLKKLGDLM-NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFY 329 (361)
Q Consensus 252 ~~~~~~~~lg~lm-~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~-~~~~~~~~~l~~~~~ 329 (361)
++.+...| |+. +..+.. ..|+++++++.+++.|++|++|||+| +||++|++. +.++++.+.+++.|.
T Consensus 220 -----~~~l~~~l~ndl-e~~~~~---l~P~~~~i~~~~~~~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~~~l~~~~~ 288 (297)
T PRK14613 220 -----WVSLQGRLENDF-EPVAFQ---LHPELGVLKDKFLEFGSSYCSLTGSG--SSMYGLVQGLEIQEELLPRLRQEFS 288 (297)
T ss_pred -----HHHHHHHhcccc-hHHHHH---hCcHHHHHHHHHHHcCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHHhhc
Confidence 77775554 555 444432 48999999999999999999999997 999999987 577888899987776
Q ss_pred hcc
Q 018058 330 QSR 332 (361)
Q Consensus 330 ~~~ 332 (361)
+.+
T Consensus 289 ~~~ 291 (297)
T PRK14613 289 NLT 291 (297)
T ss_pred cce
Confidence 544
No 40
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=2.8e-17 Score=155.74 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=69.9
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++|+|.++||+++|||||||.++|++.+++++++.+++ +.+++..+| .|...+++|| +.+...
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g---------~dv~~~~~GG---~~~~~g 146 (276)
T PRK14612 82 GGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLG---------ADVPFFLLGG---AAEARG 146 (276)
T ss_pred CCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhC---------CCcCeeeeCC---eEEEEe
Confidence 5899999999999999999999999999999999998775 445555544 4777888998 334444
Q ss_pred CCCceeeecCCCCceEEEEecCCch
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~~ 117 (361)
++..+.+++.| ++.+++++|+++.
T Consensus 147 ~g~~~~~l~~~-~~~~vv~~P~~~~ 170 (276)
T PRK14612 147 VGERLTPLELP-PVPLVLVNPGVAV 170 (276)
T ss_pred cCccceEcCCC-CcEEEEECCCCCC
Confidence 44456666644 7889999998853
No 41
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.73 E-value=4.7e-17 Score=153.51 Aligned_cols=93 Identities=13% Similarity=0.056 Sum_probs=77.1
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++|++.++||+++|||||||.++|++.+++++++.+++.++++++|.+++ +|...+++||. .+...
T Consensus 81 ~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iG---------aDvpffl~g~~---a~~~G 148 (269)
T PRK14609 81 PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLG---------ADCAFFIRNKP---VYATG 148 (269)
T ss_pred CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEEccCCC---EEEEE
Confidence 6899999999999999999999999999999999999999999999999875 68777777763 34444
Q ss_pred CCCceeeecCC-CCceEEEEecCCch
Q 018058 93 NPIRTTDVQLP-AGGTFVVAHSLAES 117 (361)
Q Consensus 93 ~~~~~~~i~~p-~~~~~ll~~s~~~~ 117 (361)
+...+.+++.+ +++.+++++|++..
T Consensus 149 ~Ge~l~~l~~~~~~~~~vlv~P~~~~ 174 (269)
T PRK14609 149 IGDIFSPIDLSLSGYYIALVKPDIHV 174 (269)
T ss_pred eCCeeEECCCCCCCCEEEEECCCCCC
Confidence 44556666543 57889999998853
No 42
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.60 E-value=2.2e-14 Score=135.52 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=73.1
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|+++.|.++||+++|||||||.++|++.+++++++.+++.++++++|.++| .|...++.|+ ..+...
T Consensus 86 ~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~ig---------aDvp~~l~g~---~~~~~g 153 (271)
T PRK00343 86 LGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLG---------ADVPVFVRGH---AAFAEG 153 (271)
T ss_pred CCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEEecCC---cEEEEe
Confidence 5899999999999999999999999999999999999999999999999887 4644444443 234444
Q ss_pred CCCceeeecCCCCceEEEEecCCch
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~~ 117 (361)
.+....+++.| ...+++++|+++.
T Consensus 154 ~g~~~~~l~~~-~~~~vl~~p~~~~ 177 (271)
T PRK00343 154 IGEILTPVDLP-EKWYLVVKPGVHI 177 (271)
T ss_pred cCCEEEECCCC-CcEEEEEeCCCCc
Confidence 44456666644 4567899998753
No 43
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.56 E-value=1.1e-13 Score=130.97 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=77.5
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++|.|.++||+++|||||||.++|++.+++++++.+++.+++.++|.++| .|...++.|| ..+...
T Consensus 79 ~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lG---------aDvPffl~~g---~a~~~G 146 (288)
T PRK00650 79 TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIG---------MDTPFFFSTG---SALGVG 146 (288)
T ss_pred CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CcchhhhcCc---eEEEEe
Confidence 5899999999999999999999999999999999999999999999999998 5888877766 334444
Q ss_pred CCCceeeecCCCCceEEEEecCCc
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~ 116 (361)
....+++++.++++.++++.|++.
T Consensus 147 ~Ge~l~~~~~~~~~~~vlv~P~~~ 170 (288)
T PRK00650 147 RGEKIIALEESVSDRYVLYFSSEG 170 (288)
T ss_pred cCCEEEECcCCCCceEEEEeCCCC
Confidence 455667776556677899988774
No 44
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.54 E-value=1.7e-12 Score=124.35 Aligned_cols=203 Identities=11% Similarity=0.098 Sum_probs=132.5
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
.+++|.+.++||.++|||||||..+|++.|++++++++++.++++++|.+.+ |..|+ +++||. +.+..
T Consensus 84 ~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs---Gsa~~------s~~GG~---v~~~~ 151 (305)
T TIGR01240 84 EKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS---GSACR------SLFGGY---VAWEK 151 (305)
T ss_pred CceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---CCeee------eeecCe---EEEEc
Confidence 4799999999999999999999999999999999999999999999999987 43333 789993 34432
Q ss_pred ----CCCceeeecCCCCc----eEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 018058 93 ----NPIRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (361)
Q Consensus 93 ----~~~~~~~i~~p~~~----~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~ 164 (361)
.+....+++.+..| .++++.+..++...++. .+ |
T Consensus 152 g~~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~---------gm-------------------------~---- 193 (305)
T TIGR01240 152 GKDDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQ---------GM-------------------------Q---- 193 (305)
T ss_pred CCCCCCeeEEECCCccccccceEEEEEcCCCCCCCCCHH---------HH-------------------------H----
Confidence 23345566555344 45555555432100110 00 0
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHH
Q 018058 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (361)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~ 244 (361)
..++..++ ...|..+. ..++.+++
T Consensus 194 -------------------~~~~ts~~----------------------------------~~~~v~~~---~~~l~~~~ 217 (305)
T TIGR01240 194 -------------------LTVATSEL----------------------------------FKEWIEHV---VPDFEVXR 217 (305)
T ss_pred -------------------HhhhcCcc----------------------------------HHHHHHHH---HHHHHHHH
Confidence 00000000 11233321 12467788
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHhhhhc-C------CCChhHHHHHHHH---HhCCCceeEeeccCCCceEEEEecC
Q 018058 245 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-E------CSCPELEELVNVC---RNNGALGARLTGAGWGGCVVALVKE 314 (361)
Q Consensus 245 ~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~-~------vs~peld~lv~~a---~~~Ga~Gak~sGaG~GG~vi~L~~~ 314 (361)
+++.++| ++.||++...+-..|.... . .-+|+.-.+++.. ++.|....-..=|| +.|..|+.+
T Consensus 218 ~ai~~~D-----~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAG--pNv~vl~~~ 290 (305)
T TIGR01240 218 KAIKTKD-----FATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAG--PNVKVLYLA 290 (305)
T ss_pred HHHHhcc-----HHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCC--CCEEEEEcc
Confidence 9999876 9999999887644443221 1 1244444444444 44565556666677 999999999
Q ss_pred CcHHHHHHHHHHHH
Q 018058 315 SIDSQFILNLKEQF 328 (361)
Q Consensus 315 ~~~~~~~~~l~~~~ 328 (361)
++.+.+.+.+++.|
T Consensus 291 ~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 291 ENLSKLFEFIYKLF 304 (305)
T ss_pred ccHHHHHHHHHHhc
Confidence 99999998887654
No 45
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.54 E-value=2.7e-14 Score=106.32 Aligned_cols=67 Identities=36% Similarity=0.484 Sum_probs=61.9
Q ss_pred eEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhc
Q 018058 16 NHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAK 83 (361)
Q Consensus 16 ~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg 83 (361)
+++|+|+||+++|||||||+++|++.+++++++.++++++++++++++|+..|.++ ++|+.+++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~-g~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPS-GIDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSH-SHHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCC-hhhHHHHHhCc
Confidence 68999999999999999999999999999999999999999999999998448875 57779999997
No 46
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.53 E-value=1.5e-13 Score=130.62 Aligned_cols=89 Identities=10% Similarity=-0.017 Sum_probs=73.3
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++++|.++||+++|||||||.++|++.+++++++ ++.+++.++|.++. +|...+++|| ..+...
T Consensus 83 ~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lG---------aDvPffl~g~---~a~~~G 148 (283)
T PRK14610 83 TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVG---------SDVPACLDSK---TLFVRG 148 (283)
T ss_pred CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhC---------CCCcEEEECC---eEEEEe
Confidence 589999999999999999999999999999999996 79999999998863 8999999887 346666
Q ss_pred CCCceeeecC-CCCceEEEEec-CC
Q 018058 93 NPIRTTDVQL-PAGGTFVVAHS-LA 115 (361)
Q Consensus 93 ~~~~~~~i~~-p~~~~~ll~~s-~~ 115 (361)
+...+++++. +....++++.| ++
T Consensus 149 ~Ge~l~~l~~~~~~~~~vl~~p~~~ 173 (283)
T PRK14610 149 IGEDILLLPDLSLPTYVVLVAPKGK 173 (283)
T ss_pred cccEEEECcccCCCCeEEEEECCCC
Confidence 6667777743 22334788877 45
No 47
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.51 E-value=2.1e-12 Score=118.45 Aligned_cols=99 Identities=22% Similarity=0.178 Sum_probs=79.8
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCC--CCchhHHHHHhhcCCeEEEE
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ--SGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~--~G~~D~~~~~~Gg~~~~~~~ 90 (361)
.++++.++|+||+++||.||||++.|++.|+.++.|.++++.+++++..++-...|.. +-.-|..++.+|| +.+.
T Consensus 69 ~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG---~~iT 145 (278)
T COG1685 69 LGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGG---IVIT 145 (278)
T ss_pred cceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceEeccchHHHHHHhCC---eEEe
Confidence 3899999999999999999999999999999999999999999999988886544322 2247777899999 6678
Q ss_pred ecCCCceeee-cCCCCceEEEEecCC
Q 018058 91 DFNPIRTTDV-QLPAGGTFVVAHSLA 115 (361)
Q Consensus 91 ~~~~~~~~~i-~~p~~~~~ll~~s~~ 115 (361)
|.+..++.+. +.| ++..+|.-|+.
T Consensus 146 DN~~m~Ilrr~~~~-~~~vlI~~p~~ 170 (278)
T COG1685 146 DNRKMRILRRLDLP-ELTVLILAPGE 170 (278)
T ss_pred cchhheehhccccC-CceEEEEecCC
Confidence 8776655444 334 67777777765
No 48
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.50 E-value=2.2e-13 Score=127.98 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=80.6
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
.|++|+|+++||+++|||+.||.++|++.+|+++++.+++.+||+.++.++. .|...+++||. -+...
T Consensus 84 ~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LG---------aDVPffl~g~t---A~a~G 151 (289)
T COG1947 84 GGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLG---------ADVPFFLSGGT---AFAEG 151 (289)
T ss_pred CCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------CCcCeeeeCCc---eEEEE
Confidence 6899999999999999999999999999999999999999999999999985 88888999884 36666
Q ss_pred CCCceeeecCCCCceEEEEecCCc
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~ 116 (361)
+.-+.++++-++...++++.|++.
T Consensus 152 ~GE~l~~~~~~~~~~~vl~~P~v~ 175 (289)
T COG1947 152 RGEKLEPLEDPPEKWYVLAKPGVG 175 (289)
T ss_pred ccceeeECCCCCCceEEEEeCCCC
Confidence 666778887445677899999875
No 49
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.48 E-value=9.8e-14 Score=107.60 Aligned_cols=82 Identities=32% Similarity=0.507 Sum_probs=70.2
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHH-hhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEe-cCCcHHHH
Q 018058 243 FKDTVSSNLSEEDKLKKLGDLMNDSHHS-CSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV-KESIDSQF 320 (361)
Q Consensus 243 ~~~al~~~~~~~~~~~~lg~lm~~sh~~-lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~-~~~~~~~~ 320 (361)
+++||.++| ++.|+++|+++|.. ......+.+|+++.+++.+++.|++|++|||+|||||+++|+ +++.++++
T Consensus 1 m~~al~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v 75 (85)
T PF08544_consen 1 MIKALAEGD-----LELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERV 75 (85)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHH
T ss_pred CHHHHHCcC-----HHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHH
Confidence 357788775 99999999999884 111236789999999999999999999999999999999999 44689999
Q ss_pred HHHHHHHHH
Q 018058 321 ILNLKEQFY 329 (361)
Q Consensus 321 ~~~l~~~~~ 329 (361)
.++|++.|+
T Consensus 76 ~~~l~~~~~ 84 (85)
T PF08544_consen 76 AEALREHYK 84 (85)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHhCC
Confidence 999988875
No 50
>PRK05905 hypothetical protein; Provisional
Probab=99.31 E-value=1.8e-11 Score=114.50 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=76.3
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhh-cCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA-KSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~G-g~~~~~~~~ 91 (361)
+|+++.+.++||.++||||+||.++|++.+++++++ ++.+++.+++.++. +|...+++| |. .+..
T Consensus 85 ~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lG---------ADVPFfl~g~~~---a~~~ 150 (258)
T PRK05905 85 NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLG---------SDIPFFLSGYKT---AYIS 150 (258)
T ss_pred CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhC---------CCcceEEeCCcc---EEEE
Confidence 689999999999999999999999999999999997 78999999998875 888888888 63 3555
Q ss_pred cCCCceeeecCCCCceEEEEecCCc
Q 018058 92 FNPIRTTDVQLPAGGTFVVAHSLAE 116 (361)
Q Consensus 92 ~~~~~~~~i~~p~~~~~ll~~s~~~ 116 (361)
.+.-.+++++.++...+++++|++.
T Consensus 151 G~GE~l~pl~~~~~~~~vlv~P~~~ 175 (258)
T PRK05905 151 DYGSQVEDLIGQFKLTYKVIFMNVN 175 (258)
T ss_pred eeCceeEECCCCCCceEEEECCCCC
Confidence 5666777876554566899999875
No 51
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1.2e-10 Score=114.59 Aligned_cols=212 Identities=20% Similarity=0.272 Sum_probs=139.0
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHH----HHHHHhccccCCCCCchhHHHHHhhcCCeEE
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA----QLTCECEQFIGTQSGGMDQAISIMAKSGFAE 88 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela----~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~ 88 (361)
.||+++.+|++|-|+|||.||-++...++|+....+.--..+.+. .-..+.|+++.+.+|++||...++-|..+..
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~gr 769 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKGR 769 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhcc
Confidence 699999999999999999999999999999999988766666554 3345688887777899999999898854211
Q ss_pred EE-e-cCCCceeeecCCC------CceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccch
Q 018058 89 LI-D-FNPIRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 160 (361)
Q Consensus 89 ~~-~-~~~~~~~~i~~p~------~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~ 160 (361)
.. + .....++++.+|. +-++++++++
T Consensus 770 ~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTG---------------------------------------------- 803 (948)
T KOG4644|consen 770 CRAELNHGIEHEEITIPEEFREKLEDHLLLVYTG---------------------------------------------- 803 (948)
T ss_pred chhhccCCceeeeecCCHHHHHHHhhcEEEEEeC----------------------------------------------
Confidence 11 0 1123556666664 2345555554
Q ss_pred hhhhhhhhhhcCCCCCC-hh-HHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhH
Q 018058 161 DVEGLCVAFACKNGSSD-PV-FAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAK 238 (361)
Q Consensus 161 d~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~ 238 (361)
+++++. ++ +.++++ |++ . +...+.+... . .
T Consensus 804 -----------KTRLAkNLLQdViRn~-----far---------------------~--------~a~~Q~ah~l-~--~ 835 (948)
T KOG4644|consen 804 -----------KTRLAKNLLQDVIRNF-----FAR---------------------C--------KATKQKAHKL-A--E 835 (948)
T ss_pred -----------chHHHHHHHHHHHHHH-----HHh---------------------h--------HHHHHHHHHH-H--H
Confidence 332111 00 011111 000 0 0111222222 1 2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhh-cCCCChhHHHHHHHHHh--CCCceeEeeccCCCceEEEEecCC
Q 018058 239 RVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRN--NGALGARLTGAGWGGCVVALVKES 315 (361)
Q Consensus 239 rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~--~Ga~Gak~sGaG~GG~vi~L~~~~ 315 (361)
.+.++..-+++|. ++.+|+++...|+..+-. -|+..+.+.+|.+.... .| -.+...|||+||+++.+.++.
T Consensus 836 ~tdecAegf~kGs-----l~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hg-esgw~AGAGGGGFiYLl~kEp 909 (948)
T KOG4644|consen 836 ATDECAEGFEKGS-----LELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHG-ESGWAAGAGGGGFIYLLIKEP 909 (948)
T ss_pred HHHHHHHHHhcCc-----HHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcccccc-ccchhccCCCCcEEEEEecCC
Confidence 3566778888886 999999999988876644 26888889999987654 23 335688999999999999876
Q ss_pred cHHHHHHHH
Q 018058 316 IDSQFILNL 324 (361)
Q Consensus 316 ~~~~~~~~l 324 (361)
...+.++++
T Consensus 910 qqkeaiEa~ 918 (948)
T KOG4644|consen 910 QQKEAIEAF 918 (948)
T ss_pred CCHHHHHHh
Confidence 555444443
No 52
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.18 E-value=2.1e-10 Score=104.62 Aligned_cols=224 Identities=20% Similarity=0.215 Sum_probs=150.7
Q ss_pred ceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccc--------cCCC---------------
Q 018058 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF--------IGTQ--------------- 70 (361)
Q Consensus 14 g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~--------~g~~--------------- 70 (361)
+-++++.+-||-++|+|||++..++.++..+....+.+++..+...+..+|+. +|.-
T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~ 173 (355)
T KOG1537|consen 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKV 173 (355)
T ss_pred ceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhh
Confidence 45778999999999999999999999998888887777776655555444421 0100
Q ss_pred CC-chhHH-HHHhhcCCeEEEEe-cCCC---ceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHH
Q 018058 71 SG-GMDQA-ISIMAKSGFAELID-FNPI---RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144 (361)
Q Consensus 71 ~G-~~D~~-~~~~Gg~~~~~~~~-~~~~---~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~ 144 (361)
+| -.|+. ....||+. ++. ..|. +.-+++..++++|+++.|.+...+..
T Consensus 174 ~~~~ad~ilp~~~gg~~---li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k----------------------- 227 (355)
T KOG1537|consen 174 SGYHADNILPAIMGGFV---LIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKK----------------------- 227 (355)
T ss_pred cCCCHHHhcccccCCee---eecCCCcccccccccCCCCccceEEEEeccccccchh-----------------------
Confidence 00 03444 46677732 332 2233 23334444578888888877532111
Q ss_pred hCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhH
Q 018058 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 224 (361)
Q Consensus 145 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (361)
.| ..++.+ |.+
T Consensus 228 --------------~R-----------------------~vLPt~-yp~------------------------------- 238 (355)
T KOG1537|consen 228 --------------MR-----------------------AVLPTE-YPM------------------------------- 238 (355)
T ss_pred --------------hh-----------------------hhcCcc-ccc-------------------------------
Confidence 01 111111 211
Q ss_pred hHHHHHhHHHhHhHHHHHHHHHHhcC-CCchHHHHHHHHHHHH-HHHHhhhhcCCCChhHHHHHHHHHhC---CCceeEe
Q 018058 225 KLHQRAAHVYSEAKRVHAFKDTVSSN-LSEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNN---GALGARL 299 (361)
Q Consensus 225 ~~~~r~~~~i~E~~rv~~~~~al~~~-~~~~~~~~~lg~lm~~-sh~~lr~~~~vs~peld~lv~~a~~~---Ga~Gak~ 299 (361)
.|.+...+|...+..|+..+ + +.....++|.+ .|+.+|.- ..|.++.+...+... |.+|--+
T Consensus 239 ------~d~V~NlqrlA~LttAl~~~p~----n~~L~y~~m~DkvhqPyRa~---LIPGl~~il~~~~p~t~pGl~Gicl 305 (355)
T KOG1537|consen 239 ------VDHVWNLQRLAALTTALLEGPD----NVMLGYALMSDKVHQPYRAP---LIPGLEAILKAALPATYPGLFGICL 305 (355)
T ss_pred ------eeeeecHHHHHHHHHHHhcCCC----chhhhhhhhhccccCccccc---cCccHHHHHHhhCcccCCceeeEEe
Confidence 11233345666666777665 3 46777788887 79999964 789999999998874 9999999
Q ss_pred eccCCCceEEEEecCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCC-CCeee
Q 018058 300 TGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPS-SGAAK 358 (361)
Q Consensus 300 sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 358 (361)
|||| +++++|.. ++-+++-+++-+.|.+.+ ..+.|-.++|. +|+.|
T Consensus 306 SGAG--PT~lAlat-enf~eI~~~mv~~F~K~G----------~kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 306 SGAG--PTALALAT-ENFQEIGEKMVEAFWKVG----------HKCSVASLKPALDGAGV 352 (355)
T ss_pred cCCC--CeeEEEec-CcHHHHHHHHHHHHHhhC----------ceeeeEeeccccCCcce
Confidence 9998 99999996 678899999999998765 48889999976 56554
No 53
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.09 E-value=5.3e-09 Score=95.29 Aligned_cols=90 Identities=24% Similarity=0.207 Sum_probs=68.2
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
.|.++.+.|+||.|.|++||+|..||++.|+..++|..++..+|+++|..+| | .|-+ +|-+ +.++|.
T Consensus 82 ~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iE-----P---tDsi--iF~~---~tlFd~ 148 (293)
T COG4542 82 TGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE-----P---TDSI--IFDK---ATLFDQ 148 (293)
T ss_pred CCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcC-----C---ccce--eccc---ceeehh
Confidence 5799999999999999999999999999999999999999999999999999 2 2222 2333 335554
Q ss_pred CCCcee-eecCCCCceEEEEecCC
Q 018058 93 NPIRTT-DVQLPAGGTFVVAHSLA 115 (361)
Q Consensus 93 ~~~~~~-~i~~p~~~~~ll~~s~~ 115 (361)
+...+. ...-+|...+++.+++.
T Consensus 149 r~g~~~~~~g~~PpL~ilv~e~~~ 172 (293)
T COG4542 149 REGRVIEFLGEMPPLHILVFEGKG 172 (293)
T ss_pred ccchHHHhcCCCCceEEEEEcCCC
Confidence 443322 22223357788888765
No 54
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.04 E-value=7.6e-10 Score=103.71 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=77.2
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhh-cCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA-KSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~G-g~~~~~~~~ 91 (361)
+|+++++.++||+++|||||||.++|++.+++++++.+++.+++.++|.++. +|...+++| + ..+..
T Consensus 85 ~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lG---------aDvPffl~~~~---~a~~~ 152 (257)
T PRK04181 85 KKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVG---------ADVAFFISGYK---SANVS 152 (257)
T ss_pred CceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCccEEecCCc---eEEEE
Confidence 5899999999999999999999999999999999999999999999999875 888888888 5 33555
Q ss_pred cCCCceeeecCCCCceEEEEecCCch
Q 018058 92 FNPIRTTDVQLPAGGTFVVAHSLAES 117 (361)
Q Consensus 92 ~~~~~~~~i~~p~~~~~ll~~s~~~~ 117 (361)
.+...+++++.++. .++++.|+++-
T Consensus 153 G~Ge~l~~l~~~~~-~~~lv~P~~~v 177 (257)
T PRK04181 153 GIGEIVEEFEEEIL-NLEIFTPNIFC 177 (257)
T ss_pred eeCCeeEECCCCCC-eEEEECCCCCc
Confidence 56666777753223 38899998853
No 55
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.99 E-value=1.2e-07 Score=91.42 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=54.7
Q ss_pred eEEEEe--CCCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 16 NHINSL--FFNLGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 16 ~i~i~s--~iP~g~GLGSSaA~~va~~~al~~l~~~~l~-~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+++|.| ++|.++|||||||..+|++.|+..+++++++ .+++..+|+. | ++.|.- +++|| ++.+..
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~-----G---SGSa~r-S~~Gg---~v~w~~ 172 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQ-----G---SGSACR-SLYGG---FVKWNM 172 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhc-----c---ChHHHH-HhhCC---eEEecC
Confidence 577777 9999999999999999999999999999999 9999999984 3 236666 89999 445543
No 56
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=98.85 E-value=6.9e-07 Score=85.57 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=66.5
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
..|++...++.|.+.||+||||..+|+++|+.+++++.++..++.++|+.+- |..+ -+++||. ..++.
T Consensus 89 ~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gS---GSa~------RS~~Gg~---~~W~~ 156 (329)
T COG3407 89 FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGS---GSAS------RSIFGGF---VLWEK 156 (329)
T ss_pred ceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhc---cchh------hhhcCCe---eEecc
Confidence 4688889999999999999999999999999999999999999999998753 2222 2689994 33432
Q ss_pred CC------CceeeecCCC--CceEEEEecCC
Q 018058 93 NP------IRTTDVQLPA--GGTFVVAHSLA 115 (361)
Q Consensus 93 ~~------~~~~~i~~p~--~~~~ll~~s~~ 115 (361)
.+ ..+.+..+++ ..-++++.+..
T Consensus 157 ~~g~~~~~~~~~~~~~~~e~~~i~~~~~~~~ 187 (329)
T COG3407 157 GEGEDSAAEQLFRLDLWKELAMIVLVISPKK 187 (329)
T ss_pred CCCCccceeeeccccCccccceEEEEEcccc
Confidence 22 1234445543 34455665544
No 57
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=98.68 E-value=3.3e-06 Score=78.11 Aligned_cols=87 Identities=24% Similarity=0.213 Sum_probs=63.1
Q ss_pred CCCCChHHHHHHHHH--HHHHHHhCCCCCH-HHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEEecCCCce----
Q 018058 26 GSGLSSSTAFVCSST--VALMAAFGVEVPK-KEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRT---- 97 (361)
Q Consensus 26 g~GLGSSaA~~va~~--~al~~l~~~~l~~-~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~---- 97 (361)
..|||||||+++.++ .++....+-+++. .+|-++|+.+-. ..|..+++-|..++++|+ ++|-+|.|...
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGs---iiyrRF~p~li~~l~ 183 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGS---IIYRRFEPGLIPKLR 183 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcc---eEEeecCcchhhhhH
Confidence 589999999999998 4444435566775 788899988865 456667779999999999 66766766322
Q ss_pred --eeecCCCCceEEEEecCCc
Q 018058 98 --TDVQLPAGGTFVVAHSLAE 116 (361)
Q Consensus 98 --~~i~~p~~~~~ll~~s~~~ 116 (361)
..+.+. ++.++..+....
T Consensus 184 qig~~nfg-~y~LmmGd~a~g 203 (337)
T COG3890 184 QIGAVNFG-DYYLMMGDQAIG 203 (337)
T ss_pred hhCccccc-CeeeeecccccC
Confidence 222332 678888887654
No 58
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=98.63 E-value=2.5e-06 Score=79.18 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=74.2
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
.++.+.+.+++|.|+|+|-|+|.+.+.+.|++..++.+ .++.++.||.+|-..+ +|..|..+..+||. .+.+..
T Consensus 73 ~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~g--tGLGDVvAq~~GGl--ViR~~p 146 (283)
T COG1829 73 DGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENG--TGLGDVVAQYTGGL--VIRVKP 146 (283)
T ss_pred cCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcC--CCchHHHHHhcCcE--EEEecC
Confidence 35779999999999999999999999999999998865 8889999999996544 56899999999992 333322
Q ss_pred C-C--CceeeecCCCCceEEEEecC
Q 018058 93 N-P--IRTTDVQLPAGGTFVVAHSL 114 (361)
Q Consensus 93 ~-~--~~~~~i~~p~~~~~ll~~s~ 114 (361)
. | ..++.++.|+ ++++.+..+
T Consensus 147 G~Pg~~~vd~Ip~~~-~~V~~~~~g 170 (283)
T COG1829 147 GGPGEGEVDRIPVPG-LRVITISLG 170 (283)
T ss_pred CCCCeEEEEEeecCC-ceEEEEEcc
Confidence 2 2 3677888775 666665544
No 59
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.44 E-value=2.9e-05 Score=73.18 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=51.9
Q ss_pred ceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhc
Q 018058 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAK 83 (361)
Q Consensus 14 g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg 83 (361)
.++|.-.++.|..+||.||||=-+|++.||.++++++.+++++..+|++.- |..| =++|||
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GS---GSAC------RSl~GG 165 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGS---GSAC------RSLYGG 165 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccC---chhh------hhhhcc
Confidence 356666679999999999999999999999999999999999999998753 3333 279999
No 60
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=97.67 E-value=0.0026 Score=60.63 Aligned_cols=66 Identities=23% Similarity=0.390 Sum_probs=45.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCC----------CCC--HHHHH-HHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 26 GSGLSSSTAFVCSSTVALMAAFGV----------EVP--KKEIA-QLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 26 g~GLGSSaA~~va~~~al~~l~~~----------~l~--~~ela-~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
..|||||||++.+++.++..-++. +++ ..+++ ++|+.+-= ..|.-+++-|..+++||. ..|.+
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS---~rYrR 228 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRR 228 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccc---eeeee
Confidence 589999999999999777666642 133 23433 44444321 347777779999999998 55777
Q ss_pred cCC
Q 018058 92 FNP 94 (361)
Q Consensus 92 ~~~ 94 (361)
|.|
T Consensus 229 F~P 231 (459)
T KOG4519|consen 229 FSP 231 (459)
T ss_pred CCH
Confidence 765
No 61
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=66.51 E-value=15 Score=26.59 Aligned_cols=48 Identities=25% Similarity=0.207 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHH
Q 018058 277 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 326 (361)
Q Consensus 277 vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~ 326 (361)
++...+..|.+++++.|.--.++|... +..+.-++.++++++.+.|++
T Consensus 21 i~~~~l~~la~ia~~yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 21 ISAEQLRALAEIAEKYGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEHHHHHHHHHHHHHHSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHhCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 566788999999999887778999555 788888888999999988864
No 62
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=38.21 E-value=72 Score=25.95 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhCCCceeEeeccCC----CceEEEE-ecCCcHHHHHHHHHHHHHhcc
Q 018058 281 ELEELVNVCRNNGALGARLTGAGW----GGCVVAL-VKESIDSQFILNLKEQFYQSR 332 (361)
Q Consensus 281 eld~lv~~a~~~Ga~Gak~sGaG~----GG~vi~L-~~~~~~~~~~~~l~~~~~~~~ 332 (361)
.-+.+.+...+.|....|++..|+ |-+.+.+ +++++.+++++-|++...++.
T Consensus 12 Da~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~R~ 68 (109)
T PF06153_consen 12 DADDLSDALNENGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKKRE 68 (109)
T ss_dssp HHHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--EE
T ss_pred hHHHHHHHHHHCCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcCce
Confidence 346778888889988899987772 4445555 466799999999999877544
No 63
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=37.59 E-value=49 Score=31.99 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHH
Q 018058 278 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 325 (361)
Q Consensus 278 s~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~ 325 (361)
+++.|..+++.|.+.|.-..++|+-+ |..|-..+.++++++.+.|+
T Consensus 43 ~~e~Lr~i~diAekyG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~ 88 (317)
T COG2221 43 SAETLRKIADIAEKYGDGLIHITSRQ--GLEIPGISPEDADDVVEELR 88 (317)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecC--ceEeccCCHHHHHHHHHHHH
Confidence 34445555555555544444555333 44444444444555554444
No 64
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=29.72 E-value=41 Score=31.51 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=20.0
Q ss_pred CChhHHHHHHHHHhCCCceeEeeccCCCceEEEEec
Q 018058 278 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVK 313 (361)
Q Consensus 278 s~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~ 313 (361)
-+|++.++.+ ..+.|||+| .|++++-+
T Consensus 229 ~~P~i~~~~~-------~~~~mSGSG--stvF~l~~ 255 (257)
T PRK04181 229 LYPALKDYLG-------EDWFFSGSG--SSFFRVKR 255 (257)
T ss_pred hCHHHHHHhc-------CCcEEeCcC--cceEEEee
Confidence 4677777743 456799888 99999854
No 65
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=29.50 E-value=1.6e+02 Score=27.26 Aligned_cols=50 Identities=10% Similarity=0.053 Sum_probs=37.1
Q ss_pred cCcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc
Q 018058 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 65 (361)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~ 65 (361)
.++++.+...+. |-.=..-.+.+++.+|.+++|.+++.++|.+.|.++|.
T Consensus 166 gi~~i~Ll~et~-----~~~PDP~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~ 215 (238)
T TIGR00161 166 DIPAICLLAETL-----GPYPDPRAAASLVEVLNKMLNTNVDPEPLLKEAEAIES 215 (238)
T ss_pred CCCEEEEEEeCC-----CCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHH
Confidence 467777766652 22233445677778899999999999999999988874
No 66
>COG1356 tfx Transcriptional regulator [DNA replication, recombination and repair]
Probab=28.66 E-value=3e+02 Score=23.06 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=32.2
Q ss_pred hhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 186 LRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
+++++++.+++.+.++.+-.++ . .+-+||...+..+.++..+++-+.++
T Consensus 19 lRekG~tQ~eIA~~L~TTraNv--------S--------aIEkrA~enIekarnTL~l~~~i~sp 67 (143)
T COG1356 19 LREKGLTQSEIARILKTTRANV--------S--------AIEKRALENIEKARNTLLLWEQINSP 67 (143)
T ss_pred hhhccccHHHHHHHHccchhhH--------H--------HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456788888888776533332 1 24567777777777788777777764
No 67
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=27.00 E-value=2.5e+02 Score=24.97 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=35.8
Q ss_pred cCcceeEEEEeC--CCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc
Q 018058 11 KFQLFNHINSLF--FNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 65 (361)
Q Consensus 11 ~~~g~~i~i~s~--iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~ 65 (361)
.++++.+..... +|. .-.+.+++.++.+++|++++.++|.+.|.++|.
T Consensus 110 gi~ai~L~~e~p~y~pD-------P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~ 159 (188)
T TIGR00162 110 GIPGACLMGETPGYMID-------PKAAKAVLEVLCKMLSLEVSVEALEERAKEMEK 159 (188)
T ss_pred CCCeEEEEEeCCCCCCC-------hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 356666665553 232 455677778899999999999999999988874
No 68
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=24.88 E-value=1.9e+02 Score=27.13 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhh--cCCCChhHHHHHHHHH-hCCCceeEeeccCCCceEEEE
Q 018058 257 LKKLGDLMNDSHHSCSVL--YECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVAL 311 (361)
Q Consensus 257 ~~~lg~lm~~sh~~lr~~--~~vs~peld~lv~~a~-~~Ga~Gak~sGaG~GG~vi~L 311 (361)
+.+.|++..+..+-+... -|+++.|||.+++... +.|++-+....-|+.+.+..=
T Consensus 14 ~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciS 71 (255)
T COG0024 14 MREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCIS 71 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEee
Confidence 444444444443333322 3899999999998865 478999998777755554433
No 69
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.56 E-value=92 Score=29.71 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=31.3
Q ss_pred CChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHH
Q 018058 278 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNL 324 (361)
Q Consensus 278 s~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l 324 (361)
.+|.||.|.+.+.+.|+.|+|+ -||+-+..+....+.+..+
T Consensus 120 ~~~GLD~Ll~R~~~y~~~GaKw------RsViki~~~~~I~~na~ql 160 (296)
T PRK05377 120 PIPNLDDLLDRAVEKGIFGTKM------RSVIKEANEQGIAAVVAQQ 160 (296)
T ss_pred cCCCHHHHHHHHHHhCCCccce------eeeecCCCHHHHHHHHHHH
Confidence 4799999999999999999998 5888886444444444444
No 70
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=20.14 E-value=1.8e+02 Score=20.10 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChhHHHHHHH
Q 018058 257 LKKLGDLMNDSHHSCSVLYECSCPELEELVNV 288 (361)
Q Consensus 257 ~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~ 288 (361)
.+.+-+-++.-|.-+|+.|+.--|||+.++.-
T Consensus 9 ~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~ 40 (53)
T PF08060_consen 9 LDDIDKEINLLHMRLREWYSWHFPELESLVPN 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHcCC
Confidence 55677778888999999999999999988653
Done!