Query 018058
Match_columns 361
No_of_seqs 139 out of 1376
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 3.8E-58 1.3E-62 465.2 30.3 344 11-360 144-519 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 1.1E-50 3.8E-55 410.0 34.9 330 12-360 147-476 (478)
3 1pie_A Galactokinase; galactos 100.0 4.6E-43 1.6E-47 348.7 34.2 275 13-360 140-417 (419)
4 1wuu_A Galactokinase; galactos 100.0 5.4E-42 1.9E-46 338.9 29.5 268 12-361 129-399 (399)
5 2cz9_A Probable galactokinase; 100.0 1.4E-40 4.7E-45 322.4 30.8 265 12-358 85-350 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 1.1E-36 3.9E-41 296.8 14.9 235 12-359 96-339 (357)
7 1kvk_A MK, mevalonate kinase; 100.0 9.9E-34 3.4E-38 279.3 25.1 238 12-360 126-381 (395)
8 3gon_A Phosphomevalonate kinas 100.0 1.4E-31 4.9E-36 256.7 22.6 208 11-326 83-318 (335)
9 2hfs_A Mevalonate kinase, puta 100.0 2.9E-30 9.9E-35 248.4 28.9 233 13-358 96-332 (332)
10 3k17_A LIN0012 protein; protei 100.0 7.7E-31 2.6E-35 256.3 25.0 210 12-326 96-341 (365)
11 4hac_A Mevalonate kinase; GHMP 100.0 4.2E-30 1.4E-34 246.9 29.2 224 12-358 95-320 (321)
12 2pg9_A Phosphomevalonate kinas 100.0 4.7E-31 1.6E-35 255.2 21.8 211 11-325 85-319 (337)
13 2x7i_A Mevalonate kinase; tran 100.0 2.7E-30 9.4E-35 246.0 22.8 216 8-328 80-297 (308)
14 2oi2_A Mevalonate kinase; enzy 100.0 6.6E-29 2.3E-33 234.3 23.4 211 12-329 72-284 (292)
15 1kkh_A Mevalonate kinase; mixe 100.0 1.1E-27 3.9E-32 228.8 23.7 201 12-325 97-304 (317)
16 1h72_C HK, homoserine kinase; 100.0 1.7E-27 5.9E-32 225.3 21.8 219 13-359 75-296 (296)
17 3hul_A HSK, HK, homoserine kin 99.9 2.8E-24 9.4E-29 204.4 22.8 218 11-360 68-290 (298)
18 3pyf_A 4-diphosphocytidyl-2-C- 99.9 1.5E-23 5E-28 200.1 20.7 213 13-360 87-301 (306)
19 2gs8_A Mevalonate pyrophosphat 99.9 7.4E-22 2.5E-26 188.8 23.0 215 13-358 91-317 (317)
20 3qt5_A Mevalonate diphosphate 99.9 1.1E-21 3.7E-26 189.2 21.6 222 13-360 93-332 (332)
21 1uek_A 4-(cytidine 5'-diphosph 99.8 1.4E-20 4.8E-25 176.4 11.9 88 13-116 75-162 (275)
22 2v8p_A 4-diphosphocytidyl-2-C- 99.8 2.5E-20 8.6E-25 174.5 10.7 92 13-116 80-171 (271)
23 1fi4_A Mevalonate 5-diphosphat 99.8 1.5E-17 5.2E-22 164.8 22.9 205 12-329 121-348 (416)
24 3lto_A Mevalonate diphosphate 99.8 1.2E-16 4E-21 152.9 22.9 201 13-329 91-309 (323)
25 2hke_A Diphosphomevalonate dec 99.7 3.1E-16 1.1E-20 153.7 24.8 204 12-329 95-319 (380)
26 2ww4_A 4-diphosphocytidyl-2C-m 99.7 3.1E-18 1E-22 161.5 9.1 92 13-117 88-179 (283)
27 3f0n_A Mevalonate pyrophosphat 99.6 8.2E-15 2.8E-19 143.4 19.0 204 13-330 122-346 (414)
28 3m05_A Uncharacterized protein 79.6 3.5 0.00012 32.6 5.7 54 279-332 15-73 (114)
29 1vfj_A Nitrogen regulatory pro 39.5 73 0.0025 24.5 6.4 52 279-330 10-83 (116)
30 2eg2_A Nitrogen regulatory pro 38.3 86 0.0029 23.9 6.6 53 278-330 9-83 (112)
31 2j9c_A GLNK1, hypothetical nit 36.8 76 0.0026 24.7 6.1 53 278-330 11-85 (119)
32 3bzq_A Nitrogen regulatory pro 30.2 1.4E+02 0.0047 22.8 6.6 53 278-330 11-85 (114)
33 2o66_A PII protein; regulation 30.1 1.5E+02 0.0052 23.6 7.0 52 279-330 22-96 (135)
34 1hwu_A PII protein; herbaspiri 29.9 1.5E+02 0.005 22.5 6.7 53 278-330 9-83 (112)
35 2ns1_B Nitrogen regulatory pro 29.0 1.9E+02 0.0066 22.1 7.7 53 278-330 13-87 (116)
36 2gw8_A PII signal transduction 27.3 1.6E+02 0.0053 22.5 6.4 53 278-330 11-85 (114)
37 1o51_A Hypothetical protein TM 25.0 85 0.0029 24.4 4.4 49 279-327 29-97 (114)
38 2cz4_A Hypothetical protein TT 23.9 1.1E+02 0.0038 23.9 4.9 52 278-329 33-98 (119)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=3.8e-58 Score=465.22 Aligned_cols=344 Identities=31% Similarity=0.490 Sum_probs=287.4
Q ss_pred cCcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeE
Q 018058 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (361)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~---~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~ 87 (361)
..+||++.|.|+||.|+|| |||++||++.|++.++ +.++++.+++++|+++|+++|.+||+|||+++++|+.+++
T Consensus 144 ~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~ 221 (520)
T 3v2u_C 144 PLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHA 221 (520)
T ss_dssp CCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBE
T ss_pred CCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeE
Confidence 3579999999999999999 9999999999999998 7789999999999999998999999999999999999999
Q ss_pred EEEecCC-CceeeecCCC----CceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCch----hhhhcccc
Q 018058 88 ELIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ----EAISKVKT 158 (361)
Q Consensus 88 ~~~~~~~-~~~~~i~~p~----~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~----~~~~~~~~ 158 (361)
+++||++ ++++++++|+ ++.|+|+||++.++||.++++.||.||+||+.|+++|++++|+... +......+
T Consensus 222 l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~s 301 (520)
T 3v2u_C 222 LYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGN 301 (520)
T ss_dssp EEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCC
T ss_pred EEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCccccccccccccccc
Confidence 9999999 9999999987 7999999999988899999999999999999999999999886521 11012348
Q ss_pred chhhhhhhhh-hhc---CC---------CCCChhHHHHHhhhc--CCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhh
Q 018058 159 LSDVEGLCVA-FAC---KN---------GSSDPVFAVKEFLRK--EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223 (361)
Q Consensus 159 l~d~~~~~~~-~~~---~~---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (361)
|||+.+.+.. +.+ .+ .+.+|.+.+.+.+.+ ++|+.+++.+.++.+.+++.+.++...++ +.+.
T Consensus 302 LRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~ 379 (520)
T 3v2u_C 302 LRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQV 379 (520)
T ss_dssp HHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESC
T ss_pred HHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--cccc
Confidence 9998754211 100 00 122344445555544 37999999888775445554444544443 3345
Q ss_pred HhHHHHHhHHHhHhHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeec
Q 018058 224 YKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTG 301 (361)
Q Consensus 224 ~~~~~r~~~~i~E~~rv~~~~~al~~~~--~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sG 301 (361)
+++++|++|+++|+.||.+++++|.+++ +.++|++.||++|+++|.+||++|+||||++|.|++++++.|++|+||||
T Consensus 380 ~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTG 459 (520)
T 3v2u_C 380 LKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTG 459 (520)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEec
Confidence 5789999999999999999999999863 22347999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEe---cCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCCeeecc
Q 018058 302 AGWGGCVVALV---KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 360 (361)
Q Consensus 302 aG~GG~vi~L~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 360 (361)
||||||+|+|+ +++.+++++++|++.|+++.+ |.++.+++++.+|+++|+.||+|+.
T Consensus 460 aG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~~~~~~p~~GA~i~~ 519 (520)
T 3v2u_C 460 AGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRY--PDLTDEELKDAIIVSKPALGTCLYE 519 (520)
T ss_dssp SCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHC--TTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred CCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CccccccCCCeEEEecCCCceEEee
Confidence 99999999999 778999999999999998876 4455555678999999999999974
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=1.1e-50 Score=409.95 Aligned_cols=330 Identities=40% Similarity=0.635 Sum_probs=276.7
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
.+||++.|+|+||+++|||||||++||++.|++.+++.++++++++++|.++|+++|.++|++||+++++|+.+.+++++
T Consensus 147 ~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~ 226 (478)
T 2a2c_A 147 LTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIE 226 (478)
T ss_dssp CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEE
T ss_pred CCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEE
Confidence 57999999999999999999999999999999999999999999999999999988999999999999999777799999
Q ss_pred cCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 018058 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (361)
Q Consensus 92 ~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 171 (361)
|++..+.++++|+++.|+|++|++++++..+ +.||.|+.||+.++++|.++.++.+. +.++|+|+++.+
T Consensus 227 f~~~~~~~~~~~~~~~~vi~~s~~~~~t~~t--~~yn~r~~e~~~A~~~L~~~~~~~~~----~~~~l~d~~~~~----- 295 (478)
T 2a2c_A 227 FSPLRATDVKLPSGAVFVIANSCVEMNKAAT--SHFNIRVMECRLAAKLLAKYKSLQWD----KVLRLEEVQAKL----- 295 (478)
T ss_dssp TTTTEEEEECCCTTEEEEEEECCCCCCGGGS--SHHHHHHHHHHHHHHHHHHHTTCCTT----TCCCHHHHHHHH-----
T ss_pred cCCCceEEecCCCCcEEEEEeCCCccccccc--chhHHHHHHHHHHHHHHHhhhccccc----ccchHHhhhhhh-----
Confidence 9998899999998899999999998654443 69999999999999999999876532 356888886543
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCC
Q 018058 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (361)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~ 251 (361)
..++.+|++.+++++.+.+|+.+++.+.++.+.+++.+.+++..++ ..+.+++++|+.|++.|+.|+.+++++|.+.
T Consensus 296 ~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~- 372 (478)
T 2a2c_A 296 GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQ--DVLIFKLYQRAKHVYSEAARVLQFKKICEEA- 372 (478)
T ss_dssp TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 2234578899999988877887778777766555555544443322 1233467899999999999999999999971
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHHhc
Q 018058 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQS 331 (361)
Q Consensus 252 ~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~~ 331 (361)
.++|++.||++|+++|+++|++|++++|++|+|++.+++.|++|+||||||||||+++|++++.+++++++|++.|++.
T Consensus 373 -~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l~~~y~~~ 451 (478)
T 2a2c_A 373 -PENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQR 451 (478)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHHHHHHHC-
T ss_pred -cccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 1236999999999999999999999999999999999999999999999999999999999888999999999999876
Q ss_pred ccCCCcccCCCCcceEEEeeCCCCeeecc
Q 018058 332 RIDRGVINNNDLGLYVFASKPSSGAAKFK 360 (361)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 360 (361)
.+....+ ..+.+|+++|+.||+++.
T Consensus 452 ~~~~~~~----~~~~~~~~~p~~Ga~~~~ 476 (478)
T 2a2c_A 452 SDGSLAP----EKQSLFATKPGGGALVLL 476 (478)
T ss_dssp ------------CCSEEEECCBCCCEEEE
T ss_pred cCccccC----CCCcEEEEcCCCCeEeec
Confidence 5210001 134789999999999874
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=4.6e-43 Score=348.73 Aligned_cols=275 Identities=27% Similarity=0.369 Sum_probs=235.9
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
+|+++.|.|+||+++|||||||+++|++.|++.+++.++++++|+++|.++|+ ++|.|+|++|++++++||.+.+++++
T Consensus 140 ~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d 219 (419)
T 1pie_A 140 KGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELD 219 (419)
T ss_dssp SCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEE
T ss_pred CCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEee
Confidence 79999999999999999999999999999999999999999999999999997 78999999999999999998888899
Q ss_pred cCCCceeeecCC-CCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 018058 92 FNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (361)
Q Consensus 92 ~~~~~~~~i~~p-~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 170 (361)
+++..++++++| +++.|++++|+++ ++|..+.||.|+.+|+.+++++.++.+ ...|+++..
T Consensus 220 ~~~~~~~~l~~~~~~~~~vl~~~~~~---~~t~~~~y~~r~~~~~~a~~~l~~~~~---------v~~l~~~~~------ 281 (419)
T 1pie_A 220 CNTLKYEMVPVELRDYDIVIMNTNKP---RALTESKYNERFAETREALKRMQTRLD---------IQSLGELSN------ 281 (419)
T ss_dssp TTTCCEEEEECCCTTEEEEEEECCCC---CCTTCHHHHHHHHHHHHHHHHHHHHCC---------CSSGGGCCH------
T ss_pred cCCCceEEeecCCCCcEEEEEECCCc---cccccchHHHHHHHHHHHHHHHhhccc---------cCchhhCCH------
Confidence 888888999987 6899999999985 566678999999999999998876422 123343211
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
+++.++. +.+ ..+..++|+.|++.|+.|+.+++++|.++
T Consensus 282 -----------------------~~~~~~~------------~~l------~~~~~~~~~~~~v~e~~r~~~~~~al~~~ 320 (419)
T 1pie_A 282 -----------------------EEFDANT------------DLI------GDETLIKRARHAVYENNRTKIAQKAFVAG 320 (419)
T ss_dssp -----------------------HHHHHTG------------GGT------CCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHH------------hhc------CcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1111110 000 01235778899999999999999999987
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhC-CCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHH
Q 018058 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 329 (361)
Q Consensus 251 ~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~-Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~ 329 (361)
| ++.||++|+++|.++++.|++++|++|.|++.+++. |++|+||||||||||+++|++++.+++++++|++.|+
T Consensus 321 d-----~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~ 395 (419)
T 1pie_A 321 N-----LTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYE 395 (419)
T ss_dssp C-----HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHH
Confidence 6 999999999999999998899999999999999997 9999999999999999999988889999999999998
Q ss_pred hcccCCCcccCCCCcceEEEeeCCCCeeecc
Q 018058 330 QSRIDRGVINNNDLGLYVFASKPSSGAAKFK 360 (361)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 360 (361)
+.++ ..+.+|+++|+.|+++++
T Consensus 396 ~~~g---------~~~~~~~~~~~~Ga~v~~ 417 (419)
T 1pie_A 396 EVVG---------YPASFYVAQIGSGSTKLD 417 (419)
T ss_dssp HHHS---------SCCEEEECCBCCCSBCC-
T ss_pred HhcC---------CCCeEEEEcCCCCeeecc
Confidence 7543 467899999999999875
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=5.4e-42 Score=338.93 Aligned_cols=268 Identities=29% Similarity=0.401 Sum_probs=227.6
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
++|+++.|.|+||+++|||||||+++|++.|++.+++.++++++++++|.++|+ ++|.|+|++||+++++||.+.++++
T Consensus 129 ~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~ 208 (399)
T 1wuu_A 129 LPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLI 208 (399)
T ss_dssp CCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEE
T ss_pred CCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEE
Confidence 479999999999999999999999999999999999999999999999999998 7899999999999999999888889
Q ss_pred ecCCCceeeecCC-CCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 018058 91 DFNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (361)
Q Consensus 91 ~~~~~~~~~i~~p-~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~ 169 (361)
++++..++++++| +++.+++++|+++ ++|..+.||.|+.+|+.+++++... .++++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~vl~~~~~~---~~t~~~~y~~r~~~~~~a~~~l~~~-------------~l~~~~~----- 267 (399)
T 1wuu_A 209 DCRSLETSLVPLSDPKLAVLITNSNVR---HSLASSEYPVRRRQCEEVARALGKE-------------SLREVQL----- 267 (399)
T ss_dssp ETTTCCEEEEECCCSSEEEEEEEEEEE---C--CTTTHHHHHHHHHHHHHHTTCS-------------STTSCCH-----
T ss_pred ecCCCceEEecCCCCCeEEEEEECCCc---cccccccHHHHHHHHHHHHHHhChh-------------hhhcCCH-----
Confidence 9888888888887 4899999999985 5666679999999999988777321 2332211
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhc
Q 018058 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (361)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~ 249 (361)
+++.+... . -.+..++|+.|++.|..|+.+++++|.+
T Consensus 268 ------------------------~~~~~~~~------------~-------l~~~~~~r~~~~~~e~~r~~~~~~al~~ 304 (399)
T 1wuu_A 268 ------------------------EELEAARD------------L-------VSKEGFRRARHVVGEIRRTAQAAAALRR 304 (399)
T ss_dssp ------------------------HHHTTGGG------------G-------SCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHh------------h-------cCHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 11110000 0 0113578889999999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHh-CCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHH
Q 018058 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF 328 (361)
Q Consensus 250 ~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~-~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~ 328 (361)
+| ++.||++|+++|+++++.+++++|++|++++.+++ .|++|+||||||||||+++|++++.+++++++|++.|
T Consensus 305 ~d-----~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~ 379 (399)
T 1wuu_A 305 GD-----YRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY 379 (399)
T ss_dssp TC-----HHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred CC-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHh
Confidence 86 99999999999999998889999999999999999 7999999999999999999998888899999998877
Q ss_pred HhcccCCCcccCCCCcceEEEeeCCCCeeeccC
Q 018058 329 YQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 361 (361)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 361 (361)
. ..+.+|+++|+.|++++.|
T Consensus 380 ---~----------~~~~~~~~~~~~Ga~~~~~ 399 (399)
T 1wuu_A 380 ---G----------GTATFYLSQAADGAKVLCL 399 (399)
T ss_dssp ---S----------SCCEEEEECCCCCSEECCC
T ss_pred ---C----------CCCcEEEEcCCCCeeeccC
Confidence 1 3568999999999998753
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=1.4e-40 Score=322.36 Aligned_cols=265 Identities=23% Similarity=0.312 Sum_probs=225.6
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
.+|+++.|.|+||+++|||||||++||++.|++++++.++++++++++|.++|. ++|.|+|++|++++.+|+.++++++
T Consensus 85 ~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~ 164 (350)
T 2cz9_A 85 VGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFL 164 (350)
T ss_dssp CCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEE
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEE
Confidence 379999999999999999999999999999999999999999999999999997 7899999999999999998889999
Q ss_pred ecCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 018058 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (361)
Q Consensus 91 ~~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 170 (361)
++++..++++++|+++++++++|++++ .+..+.|+.|+.+|+.+++.++. ..||++...
T Consensus 165 d~~~~~~~~l~~~~~~~~vl~~~~~~~---~~~t~~~~~r~~~~~~a~~~~~~-------------~~lr~~~~~----- 223 (350)
T 2cz9_A 165 DTHTLDYEYIPFPKDVSILVFYTGVRR---ELASSEYAERKHIAEESLKILGK-------------GSSKEVREG----- 223 (350)
T ss_dssp ETTTCCEEEEECCTTEEEEEEECSCC-------CHHHHHHHHHHHHHHHHHTC-------------SCGGGCCGG-----
T ss_pred ecCCCcEEEEcCCCCcEEEEEECCCCC---ccccchHHHHHHHHHHHHHHhCh-------------hhhhhCCHH-----
Confidence 998888899998889999999999863 34445699999999998877631 234432110
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
++ . .++ ..++++..|.+.|..|+..+.++|.++
T Consensus 224 ------------------------~~-~----~l~------------------~~~~~~~~~~~~~~~~~~~~~~al~~~ 256 (350)
T 2cz9_A 224 ------------------------EL-S----KLP------------------PLHRKFFGYIVRENARVLEVRDALKEG 256 (350)
T ss_dssp ------------------------GG-G----GSC------------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------HH-h----hCC------------------HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 00 0 000 123556778888888999999999987
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHHh
Q 018058 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 251 ~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
| ++.||++|+++|..+++.+++++|++|.+++.+++.|++|+||||||||||+++|++++.++++.++|++.|++
T Consensus 257 d-----~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~~~~~ 331 (350)
T 2cz9_A 257 N-----VEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLK 331 (350)
T ss_dssp C-----HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCCCceEEEEEEchhhHHHHHHHHHHHHHH
Confidence 6 99999999999999998889999999999999999999999999999999999999888889999999999987
Q ss_pred cccCCCcccCCCCcceEEEeeCCCCeee
Q 018058 331 SRIDRGVINNNDLGLYVFASKPSSGAAK 358 (361)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 358 (361)
.++ +.+.+|+++|+.|+++
T Consensus 332 ~~~---------~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 332 RFP---------WKARHFIVEPSDGVGI 350 (350)
T ss_dssp HCC---------SCCEEEEECEECCSBC
T ss_pred hhC---------CCCcEEEecCCCCCCC
Confidence 633 4778999999999975
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-36 Score=296.83 Aligned_cols=235 Identities=16% Similarity=0.216 Sum_probs=169.2
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
.+||++.+.++||.++|||||||++||++.|++.+++.++++++++++|.++|+ ++|.|||.+||+++++||...+.+.
T Consensus 96 ~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~ 175 (357)
T 3k85_A 96 PKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFL 175 (357)
T ss_dssp CCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEE
T ss_pred CCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEe
Confidence 469999999999999999999999999999999999999999999999999998 8899999999999999997655555
Q ss_pred ecCCCceeeecCCCC------ceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 018058 91 DFNPIRTTDVQLPAG------GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (361)
Q Consensus 91 ~~~~~~~~~i~~p~~------~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~ 164 (361)
++++..++++++|+. +.+++++|+.+++ + .+++++..
T Consensus 176 ~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~~---a---------------~~~l~~~~------------------- 218 (357)
T 3k85_A 176 QNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRS---S---------------AAIINEQK------------------- 218 (357)
T ss_dssp TTTEEEEEEECCCHHHHHHHHHTEEEECC---------------------------------------------------
T ss_pred CCCceeEEEEecChhhhhhcCceEEEEECCCccc---H---------------HHHHHHHH-------------------
Confidence 556567788888753 5789999987532 2 11111100
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHH
Q 018058 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (361)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~ 244 (361)
.. +.. .+ ..+.++.|.+.| ++.+++
T Consensus 219 -------------------~~----------~~~-----~~-------------------~~~~~~~~~i~~--~~~~~~ 243 (357)
T 3k85_A 219 -------------------KN----------TSE-----GN-------------------QTAIEAMHKIKQ--SAIDTK 243 (357)
T ss_dssp ------------------------------------------------------------CCTTHHHHHHHH--HHHHHH
T ss_pred -------------------HH----------hhc-----Cc-------------------HHHHHHHHHHHH--HHHHHH
Confidence 00 000 00 012345555543 678889
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHhhhh-cCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHH
Q 018058 245 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 323 (361)
Q Consensus 245 ~al~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~ 323 (361)
++|.++| ++.||++|+++|++++++ +++++|++|+|++.+++.|++|+||||||+|||+++|++++.++++.++
T Consensus 244 ~aL~~~d-----~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~gG~vial~~~~~~~~~~~~ 318 (357)
T 3k85_A 244 LALLKGD-----VGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRA 318 (357)
T ss_dssp HHHTTTC-----HHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC---CEEEECCHHHHHHHHHH
T ss_pred HHHHcCC-----HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCCCCEEEEEecHHHHHHHHHH
Confidence 9999876 999999999999999987 8999999999999999999999999999999999999987777777777
Q ss_pred HHHHHHhcccCCCcccCCCCcceEEEeeCCC-Ceeec
Q 018058 324 LKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 359 (361)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 359 (361)
|++. ...++.++++. |++|-
T Consensus 319 l~~~----------------g~~~~~~~~~~~G~~v~ 339 (357)
T 3k85_A 319 LNNL----------------NGFVMPFQFIDDGAHGW 339 (357)
T ss_dssp HHTS----------------SSCBCCCCBCCCCCEEE
T ss_pred HHHC----------------CCeEEEeEEcCCceEEE
Confidence 7542 12456666663 77763
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=9.9e-34 Score=279.33 Aligned_cols=238 Identities=19% Similarity=0.240 Sum_probs=185.7
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCC-----CCC-------H---HHHHHHHHHhcc-ccCCCCCchh
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----EVP-------K---KEIAQLTCECEQ-FIGTQSGGMD 75 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~-----~l~-------~---~ela~la~~~E~-~~g~~~G~~D 75 (361)
.+|+++.|.|+||+++|||||||++||++.|++.+++. +++ + .+++++|+++|+ ++|.++|. |
T Consensus 126 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D 204 (395)
T 1kvk_A 126 LPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-D 204 (395)
T ss_dssp CCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-H
T ss_pred CCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-c
Confidence 57999999999999999999999999999999999998 788 7 456677999998 78999997 9
Q ss_pred HHHHHhhcCCeEEEEecCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhc
Q 018058 76 QAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (361)
Q Consensus 76 ~~~~~~Gg~~~~~~~~~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~ 155 (361)
++++++|| ++++ ++..++++++++++++++++|++++++... + +
T Consensus 205 ~~~~~~Gg---~~~~--~~~~~~~l~~~~~~~~vl~~~~~~~~T~~~----~-----------~---------------- 248 (395)
T 1kvk_A 205 NSVSTWGG---ALRY--QQGKMSSLKRLPALQILLTNTKVPRSTKAL----V-----------A---------------- 248 (395)
T ss_dssp HHHHHHCS---EEEE--SSSCEEECSCCCCEEEEEEECCCCCCHHHH----H-----------H----------------
T ss_pred hHHhhhcc---eEEE--cCCCceeccCCCCcEEEEEECCCCCchHHH----H-----------H----------------
Confidence 99999998 3344 344678888777899999999986432211 0 0
Q ss_pred cccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHh
Q 018058 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 235 (361)
Q Consensus 156 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~ 235 (361)
.+++ .... +. +.+ ..+++++.|++.
T Consensus 249 --~~~~-----------------------~~~~--~~-~~~---------------------------~~~~~~~~~~~~ 273 (395)
T 1kvk_A 249 --GVRS-----------------------RLIK--FP-EIM---------------------------APLLTSIDAISL 273 (395)
T ss_dssp --HHHH-----------------------HHHH--SH-HHH---------------------------HHHHHHHHHHHH
T ss_pred --HHHH-----------------------HHHH--CH-HHH---------------------------HHHHHHHHHHHH
Confidence 0000 0000 00 000 024567788887
Q ss_pred HhHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecC
Q 018058 236 EAKRVHAF-KDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE 314 (361)
Q Consensus 236 E~~rv~~~-~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~ 314 (361)
|..|+... +.++.+ +|++.||++|+++|.++++ |++++|++|++++.+++.|+ |+||||||||||+++|+++
T Consensus 274 ~~~~~l~~~~~al~~-----~d~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~~Ga-ga~~sGaG~Gg~v~~l~~~ 346 (395)
T 1kvk_A 274 ECERVLGEMAAAPVP-----EQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAAHGL-HSKLTGAGGGGCGITLLKP 346 (395)
T ss_dssp HHHHHHHHHTTCCCH-----HHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHTTC-EEEECSSCSSSEEEEEECT
T ss_pred HHHHHHHhhhccccH-----HHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHcCC-ceeeccCCCCCEEEEEecC
Confidence 77776544 344543 4699999999999999997 79999999999999999999 9999999999999999988
Q ss_pred CcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEee-CCCCeeecc
Q 018058 315 SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASK-PSSGAAKFK 360 (361)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~Ga~v~~ 360 (361)
+..+++++++.+.|++..+ .+|+++ ++.|+++..
T Consensus 347 ~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~G~~v~~ 381 (395)
T 1kvk_A 347 GLERAKVEAAKQALTGCGF------------DCWETSIGAPGVSMHS 381 (395)
T ss_dssp TCCHHHHHHHHHHHHHTTC------------EEEEEEESCCCSEEEC
T ss_pred CCCHHHHHHHHHHHHHcCC------------EEEEEecCCCcEEEEe
Confidence 7788899999888876432 478888 677998864
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=1.4e-31 Score=256.73 Aligned_cols=208 Identities=17% Similarity=0.136 Sum_probs=159.0
Q ss_pred cCcceeEEEEeCCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCe
Q 018058 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (361)
Q Consensus 11 ~~~g~~i~i~s~iP~g---~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~ 86 (361)
.++|+++.|.|++|.+ +|||||||++||++.+++.++++++++++++++|+.+|+ +.|.++| +||+++++||.
T Consensus 83 ~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg-~D~a~a~~Gg~-- 159 (335)
T 3gon_A 83 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSM-GDLACIAAEDL-- 159 (335)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCS-HHHHHHHHTSC--
T ss_pred CCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCC-CCcceeecCCe--
Confidence 4589999999999987 699999999999999999999999999999999999998 4566555 99999999994
Q ss_pred EEEEecC----------------------CCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHH
Q 018058 87 AELIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144 (361)
Q Consensus 87 ~~~~~~~----------------------~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~ 144 (361)
+++.+. .....+++.|.++.+++++++.+.++... +
T Consensus 160 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t~~~------------------v--- 217 (335)
T 3gon_A 160 -VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHM------------------V--- 217 (335)
T ss_dssp -EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHH------------------H---
T ss_pred -EEEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCChhhHHHH------------------H---
Confidence 233221 12345666677899999999886432110 0
Q ss_pred hCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhH
Q 018058 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 224 (361)
Q Consensus 145 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (361)
+.+++. ...
T Consensus 218 -----------------------------------~~v~~~-----~~~------------------------------- 226 (335)
T 3gon_A 218 -----------------------------------QQIKQN-----INQ------------------------------- 226 (335)
T ss_dssp -----------------------------------HHHGGG-----CCH-------------------------------
T ss_pred -----------------------------------HHHHHH-----hHH-------------------------------
Confidence 000000 000
Q ss_pred hHHHHHhHHHhHhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhh-cCCCChhHHHHHHHHHhCCCceeEeeccC
Q 018058 225 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAG 303 (361)
Q Consensus 225 ~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~~Ga~Gak~sGaG 303 (361)
.++.....++.++..+|.++| ++.||++|+++|.+++++ +++++|++|.|++.+++.|+ |+||||||
T Consensus 227 ------~~~~~~~~~~~~~~~aL~~~d-----~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~-~akltGAG 294 (335)
T 3gon_A 227 ------NFLTSSKETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAG 294 (335)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSE-EEEECTTC
T ss_pred ------HHHHHHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCc-EEEEcccc
Confidence 011122346778889999876 999999999999999996 48999999999999999986 89999999
Q ss_pred CCceEEEEecCC-cHHHHHHHHHH
Q 018058 304 WGGCVVALVKES-IDSQFILNLKE 326 (361)
Q Consensus 304 ~GG~vi~L~~~~-~~~~~~~~l~~ 326 (361)
||||+|+|++++ .++.+.++|++
T Consensus 295 ~Ggc~ial~~~~~~~~~i~~~~~~ 318 (335)
T 3gon_A 295 GGDCGIALSFDAQSTKTLKNRWAD 318 (335)
T ss_dssp SSSEEEEEECSHHHHHHHHHHHHH
T ss_pred chheEEEEECCHHHHHHHHHHHHH
Confidence 999999999653 44455544443
No 9
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.98 E-value=2.9e-30 Score=248.37 Aligned_cols=233 Identities=24% Similarity=0.363 Sum_probs=175.9
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
+|+++.+.++||+++|||||||+++|++.|++++++.++++++++++|+++|+ ++|.++|. |++++++|| +++.+
T Consensus 96 ~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~-D~~~~~~Gg---~~~~~ 171 (332)
T 2hfs_A 96 DGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGA-DNTAATYGG---LILYR 171 (332)
T ss_dssp SEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSH-HHHHHHHCE---EEEEE
T ss_pred CceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcH-hHHHHhcCC---eEEEe
Confidence 58999999999999999999999999999999999999999999999999998 77999986 999999999 33443
Q ss_pred c-CC-CceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 018058 92 F-NP-IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (361)
Q Consensus 92 ~-~~-~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~ 169 (361)
. .. ..+.++++|+++.+++++|+++.++.. +++.. ..+++.
T Consensus 172 ~~~g~~~~~~~~~~~~~~~vl~~~~~~~~T~~------------------~~~~~------------~~~~~~------- 214 (332)
T 2hfs_A 172 RQNGKSVFKPIAFQQRLYLVVVGTGINASTAK------------------VVNDV------------HKMKQQ------- 214 (332)
T ss_dssp ECSSSEEEEEECCCSCEEEEEEECSCCCCHHH------------------HHHHH------------HHHHHH-------
T ss_pred cCCCCcceeeecCCCCcEEEEEECCCCccHHH------------------HHHHH------------HHHHHh-------
Confidence 2 22 257788887889999999998643211 11000 000000
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhc
Q 018058 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (361)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~ 249 (361)
..+.+. .+++++.+ ++.++..+|.+
T Consensus 215 ----------------------~~~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 239 (332)
T 2hfs_A 215 ----------------------QPVQFK---------------------------RLYDNYTH------IVSQAREALQK 239 (332)
T ss_dssp ----------------------CHHHHH---------------------------HHHHHHHH------HHHHHHHHHHH
T ss_pred ----------------------CHHHHH---------------------------HHHHHHHH------HHHHHHHHHHc
Confidence 000000 01223322 34566788887
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCC-cHHHHHHHHHHHH
Q 018058 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQF 328 (361)
Q Consensus 250 ~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~-~~~~~~~~l~~~~ 328 (361)
+| ++.|+++|+++|..++.. ++++|+++++++.+++.|++|+||||+|+|||+++|++++ .++++.+++++.|
T Consensus 240 ~d-----~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~ 313 (332)
T 2hfs_A 240 GD-----LQRLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKC 313 (332)
T ss_dssp TC-----HHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHC
T ss_pred CC-----HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHHHH
Confidence 75 999999999999988874 8899999999999999999999999999999999999775 4688999998776
Q ss_pred HhcccCCCcccCCCCcceEEEeeCCCCeee
Q 018058 329 YQSRIDRGVINNNDLGLYVFASKPSSGAAK 358 (361)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 358 (361)
....+ ...+.+.|++||++
T Consensus 314 ~~~~~-----------~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 314 PEAKF-----------IWRYTVQPSAASNL 332 (332)
T ss_dssp TTCCE-----------EEEEEECCSCC---
T ss_pred hcCCc-----------eEEEEeccCCCCCC
Confidence 54332 12466778889874
No 10
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.98 E-value=7.7e-31 Score=256.30 Aligned_cols=210 Identities=16% Similarity=0.185 Sum_probs=163.9
Q ss_pred CcceeEEEEeCCCC----CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCe
Q 018058 12 FQLFNHINSLFFNL----GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (361)
Q Consensus 12 ~~g~~i~i~s~iP~----g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~ 86 (361)
.+||++.|.|+||. ++|||||||++||++.|++.+++.++++++++++|+++|+ +.| ++|++|++++++||
T Consensus 96 ~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~Gg--- 171 (365)
T 3k17_A 96 LTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQG-NGSCGDIASCMYGG--- 171 (365)
T ss_dssp CCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHCS---
T ss_pred CCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-CCCcccHHHHhcCC---
Confidence 57999999999996 5699999999999999999999999999999999999998 667 67779999999999
Q ss_pred EEEEe-cC----------------------CCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHH
Q 018058 87 AELID-FN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143 (361)
Q Consensus 87 ~~~~~-~~----------------------~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~ 143 (361)
+++++ +. +..++++++|++ ++++++|++++++... ++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT~~~---------------~~~v~- 234 (365)
T 3k17_A 172 WIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVSTGKL---------------VSQIH- 234 (365)
T ss_dssp EEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCHHHH---------------HHHHH-
T ss_pred EEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCccchHHH---------------HHHHH-
Confidence 33443 21 356778888878 9999999997432110 00010
Q ss_pred HhCCCchhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhh
Q 018058 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223 (361)
Q Consensus 144 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (361)
++....
T Consensus 235 ----------------------------------------~~~~~~---------------------------------- 240 (365)
T 3k17_A 235 ----------------------------------------AFKQED---------------------------------- 240 (365)
T ss_dssp ----------------------------------------HHHHHC----------------------------------
T ss_pred ----------------------------------------HHHHhC----------------------------------
Confidence 000000
Q ss_pred HhHHHHHhHHHhHh-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCC------CChhHHHHHHHHHhCCCce
Q 018058 224 YKLHQRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC------SCPELEELVNVCRNNGALG 296 (361)
Q Consensus 224 ~~~~~r~~~~i~E~-~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~v------s~peld~lv~~a~~~Ga~G 296 (361)
-++..+++.|. .++.+++++|.++| ++.||++|+++|++|+++ ++ ++|++|+|++.+++.|++
T Consensus 241 ---~~~~~~~~~~~~~~~~~~~~aL~~gd-----~~~lg~lm~~~~~~l~~l-~v~~~~~is~p~ld~l~~~a~~~Ga~- 310 (365)
T 3k17_A 241 ---SKNYQHFLTRNNEIMKQIIQAFHTKD-----EELLYSSIKENRRILQEL-GTKAGVNIETSLLKELADSAENMGGA- 310 (365)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHH-HHHHTCCCSCHHHHHHHHHHHHTTSE-
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHh-hhhcCCcccCHHHHHHHHHHHhcCCE-
Confidence 01123445553 45688899999876 999999999999999985 55 999999999999999998
Q ss_pred eEeeccCCCceEEEEecCC-cHHHHHHHHHH
Q 018058 297 ARLTGAGWGGCVVALVKES-IDSQFILNLKE 326 (361)
Q Consensus 297 ak~sGaG~GG~vi~L~~~~-~~~~~~~~l~~ 326 (361)
+||||||||||+++|++++ .++++.++|++
T Consensus 311 ak~sGAGgGg~vial~~~~~~~~~l~~~l~~ 341 (365)
T 3k17_A 311 GKSSGSGGGDCGIAFSKTKELAEKLVNEWEK 341 (365)
T ss_dssp EEECTTCSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred EEecCCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 9999999999999999764 45555555543
No 11
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.98 E-value=4.2e-30 Score=246.91 Aligned_cols=224 Identities=27% Similarity=0.265 Sum_probs=169.2
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
.+|+++.|.++||+++|||||||+++|++.|++++++.++++++++++|.++|+ ++|. +|++|++++++|| ++++
T Consensus 95 ~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~-~~~~D~~~~~~Gg---~~~~ 170 (321)
T 4hac_A 95 INGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGA-ASPTDTYVSTFGG---VVTI 170 (321)
T ss_dssp CCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSC-CCSHHHHHHHHCS---EEEE
T ss_pred CCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-CcHHHHHHHHcCC---eEEE
Confidence 479999999999999999999999999999999999999999999999999998 6677 6789999999999 4444
Q ss_pred ecCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 018058 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (361)
Q Consensus 91 ~~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 170 (361)
.+ .+++++| ++++++++|+++.++... ...++.++..
T Consensus 171 -~~---~~~l~~p-~~~~vlv~p~~~~sT~~~------------~~~~~~l~~~-------------------------- 207 (321)
T 4hac_A 171 -PE---RRKLKTP-DCGIVIGDTGVFSSTKEL------------VANVRQLRES-------------------------- 207 (321)
T ss_dssp -TT---CCEECCC-CCEEEEEECCCCCCHHHH------------HHHHHHHHHH--------------------------
T ss_pred -cC---CceeccC-CCEEEEEECCCCccHHHH------------HHHHHHHHhc--------------------------
Confidence 22 2344456 899999999986432211 0000000000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
.. +.+. ...+... ..+.++.++|.++
T Consensus 208 --------------------~~-~~~~---------------------------~~~~~~~------~~~~~~~~al~~~ 233 (321)
T 4hac_A 208 --------------------YP-DLIE---------------------------PLMTSIG------KISRIGEQLVLSG 233 (321)
T ss_dssp --------------------CH-HHHH---------------------------HHHHHHH------HHHHHHHHHHHHT
T ss_pred --------------------CH-HHHH---------------------------HHHHHHH------HHHHHHHHHHHhC
Confidence 00 0000 0011111 1234567888877
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHHh
Q 018058 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 251 ~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
| ++.|+++|+++|..++ .+++++|++|++++.+++.|++|+||||+|+|||+++|++++.++++.++|++.
T Consensus 234 d-----~~~lg~~~~~~~~~~~-~~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~~~--- 304 (321)
T 4hac_A 234 D-----YASIGRLMNVNQGLLD-ALGVNILELSQLIYSARAAGAFGAKITGAGGGGCMVALTAPEKCNQVAEAVAGA--- 304 (321)
T ss_dssp C-----HHHHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEECSTTHHHHHHHHHHT---
T ss_pred C-----HHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEEEcCHHHHHHHHHHHHhC---
Confidence 5 9999999999987665 458999999999999999999999999999999999999667788877777542
Q ss_pred cccCCCcccCCCCcceEEEeeCCC-Ceee
Q 018058 331 SRIDRGVINNNDLGLYVFASKPSS-GAAK 358 (361)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 358 (361)
...++.++++. |++|
T Consensus 305 -------------g~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 305 -------------GGKVTITKPTEQGLKV 320 (321)
T ss_dssp -------------TCEEEEECBCSCSSEE
T ss_pred -------------CCeEEEEEECCCceec
Confidence 23689999885 9886
No 12
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.97 E-value=4.7e-31 Score=255.20 Aligned_cols=211 Identities=16% Similarity=0.151 Sum_probs=164.2
Q ss_pred cCcceeEEEEeCCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeE
Q 018058 11 KFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (361)
Q Consensus 11 ~~~g~~i~i~s~iP~g---~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~ 87 (361)
..+||+++|.|+||.+ +|||||||++||++.|++++++.++++++++++|+++|.++|.++|++|++++++||....
T Consensus 85 ~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg~~~~ 164 (337)
T 2pg9_A 85 NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLY 164 (337)
T ss_dssp CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEE
T ss_pred CCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCEEEE
Confidence 4579999999999999 9999999999999999999999999999999999999987888999999999999995321
Q ss_pred EEEecC-------------------CCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCC
Q 018058 88 ELIDFN-------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK 148 (361)
Q Consensus 88 ~~~~~~-------------------~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~ 148 (361)
...+.. +..++++++|+++++++++|++++++... ++.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~~~~T~~~---------------~~~~~------ 223 (337)
T 2pg9_A 165 QSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHM---------------VQQIK------ 223 (337)
T ss_dssp ECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHH---------------HHHHG------
T ss_pred ecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCCccchHHH---------------HHHHH------
Confidence 111221 23577888887899999999986432110 00000
Q ss_pred chhhhhccccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHH
Q 018058 149 PQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQ 228 (361)
Q Consensus 149 ~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (361)
+. +. ++ ..+
T Consensus 224 ---------------------------------------~~-~~-~~------------------------------~~~ 232 (337)
T 2pg9_A 224 ---------------------------------------QN-IN-QN------------------------------FLT 232 (337)
T ss_dssp ---------------------------------------GG-CC-HH------------------------------HHH
T ss_pred ---------------------------------------HH-HH-HH------------------------------HHH
Confidence 00 00 00 001
Q ss_pred HHhHHHhHhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhc-CCCChhHHHHHHHHHhCCCceeEeeccCCCce
Q 018058 229 RAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRNNGALGARLTGAGWGGC 307 (361)
Q Consensus 229 r~~~~i~E~~rv~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~-~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~ 307 (361)
+. ..++.+++++|.++| ++.|+++|+++|++++++. ++++|++|+|++.+++.|++ +||||||||||
T Consensus 233 ~~------~~~~~~~~~aL~~~d-----~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga~-ak~sGaGgGg~ 300 (337)
T 2pg9_A 233 SS------KETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV-AKSSGAGGGDC 300 (337)
T ss_dssp HH------HHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE-EEECTTCSSSE
T ss_pred HH------HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCCE-EEEeCCCCccE
Confidence 11 235667888998876 9999999999999999874 49999999999999999999 99999999999
Q ss_pred EEEEecCC-cHHHHHHHHH
Q 018058 308 VVALVKES-IDSQFILNLK 325 (361)
Q Consensus 308 vi~L~~~~-~~~~~~~~l~ 325 (361)
+++|++++ .++++.++|+
T Consensus 301 vial~~~~~~~~~~~~~l~ 319 (337)
T 2pg9_A 301 GIALSFDAQSTKTLKNRWA 319 (337)
T ss_dssp EEEEECSHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHH
Confidence 99999763 4555555554
No 13
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.97 E-value=2.7e-30 Score=246.03 Aligned_cols=216 Identities=21% Similarity=0.282 Sum_probs=166.5
Q ss_pred hhhcCcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCe
Q 018058 8 IITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGF 86 (361)
Q Consensus 8 ~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~ 86 (361)
+.+.++|+++++.++||+++|||||||+++|++.|++++++.++++++++++|.++|+ ++|.|+| .|+.++.+||
T Consensus 80 ~~~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG-~d~~~~~~g~--- 155 (308)
T 2x7i_A 80 LNNITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSG-IDTQTIVSGK--- 155 (308)
T ss_dssp HTTCCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCH-HHHHHHHHTS---
T ss_pred HHhhCCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCch-HHHHHhhCCc---
Confidence 4445579999999999999999999999999999999999999999999999999998 7799998 5999988888
Q ss_pred EEEEecCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhh
Q 018058 87 AELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLC 166 (361)
Q Consensus 87 ~~~~~~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~ 166 (361)
.++++ +...+++++++.++.+++++|+++.++... + ..+++
T Consensus 156 ~~~~~-~g~~~~~~~~~~~~~~vi~~~~~~~sT~~~----~-----------------------------~~l~~----- 196 (308)
T 2x7i_A 156 PVWFQ-KGHAETLKTLSLDGYMVVIDTGVKGSTRQA----V-----------------------------HDVHK----- 196 (308)
T ss_dssp CEEEE-TTEEEECSCCCBSSEEEEEECCC--CCSCC----C-----------------------------C---------
T ss_pred eEEEE-cCCCceEeccCCCceEEEEECcCCCCHHHH----H-----------------------------HHHHH-----
Confidence 44555 444567777766789999999885332110 0 00000
Q ss_pred hhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHH
Q 018058 167 VAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDT 246 (361)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~a 246 (361)
..... + ..++ ..++ ..++.++..+
T Consensus 197 ------------------~~~~~---------------~-------------------~~~~-~~~~---~~~~~~~~~a 220 (308)
T 2x7i_A 197 ------------------LCEDP---------------Q-------------------YMSH-VKHI---GKLVLRASDV 220 (308)
T ss_dssp ----------------------C---------------C-------------------HHHH-HHHH---HHHHHHHHHH
T ss_pred ------------------HHhcC---------------c-------------------hHHH-HHHH---HHHHHHHHHH
Confidence 00000 0 0111 1221 1356677788
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecC-CcHHHHHHHHH
Q 018058 247 VSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLK 325 (361)
Q Consensus 247 l~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~-~~~~~~~~~l~ 325 (361)
|.++| ++.|+++|+++|..+++. ++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.++++
T Consensus 221 l~~~d-----~~~l~~~~~~~~~~~~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~ 294 (308)
T 2x7i_A 221 IEHHK-----FEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVE 294 (308)
T ss_dssp HHTTC-----HHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHH
T ss_pred HHcCC-----HHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHH
Confidence 98775 999999999999999984 899999999999999999999999999999999999987 56777887776
Q ss_pred HHH
Q 018058 326 EQF 328 (361)
Q Consensus 326 ~~~ 328 (361)
+.|
T Consensus 295 ~~~ 297 (308)
T 2x7i_A 295 KAG 297 (308)
T ss_dssp HTT
T ss_pred hCC
Confidence 654
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.97 E-value=6.6e-29 Score=234.27 Aligned_cols=211 Identities=19% Similarity=0.228 Sum_probs=157.5
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
.+|+++.+.++||.++|||||||+++|++.|++++++.+++.++++++|.++|+ .++.|+|. |++++++||. +++
T Consensus 72 ~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~-d~~~~~~gg~---~~~ 147 (292)
T 2oi2_A 72 EACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGL-DAKTCLSDQP---IRF 147 (292)
T ss_dssp CCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSH-HHHHHTCSSC---EEE
T ss_pred CCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCch-hHHHHhcCce---EEE
Confidence 368999999999999999999999999999999999999999999999999998 67999985 9999999983 344
Q ss_pred ecCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 018058 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (361)
Q Consensus 91 ~~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 170 (361)
.+...+++++++....+++++++++.++.. +.+.+...
T Consensus 148 -~~~~~~~~~~~~~~~~~~i~~~~~~~sT~~---------------~~~~l~~~-------------------------- 185 (292)
T 2oi2_A 148 -IKNVGFTELEMDLSAYLVIADTGVYGHTRE---------------AIQVVQNK-------------------------- 185 (292)
T ss_dssp -ETTTEEEECCCCCSCEEEEEECSSCCCHHH---------------HHHHHHHT--------------------------
T ss_pred -EcCCCceeecCCCCCEEEEEECCCCCcHHH---------------HHHHHHHH--------------------------
Confidence 233456666654323388999987533211 00111000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
.. ..++..+.+. ..+.++.++|.++
T Consensus 186 --------------------~~---------------------------------~~~~~~~~~~--~~~~~~~~al~~~ 210 (292)
T 2oi2_A 186 --------------------GK---------------------------------DALPFLHALG--ELTQQAEIAISQK 210 (292)
T ss_dssp --------------------GG---------------------------------GGHHHHHHHH--HHHHHHHHHHHTT
T ss_pred --------------------Hh---------------------------------hhHHHHHHHH--HHHHHHHHHHHcC
Confidence 00 0001111111 1244567888877
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecC-CcHHHHHHHHHHHHH
Q 018058 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFY 329 (361)
Q Consensus 251 ~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~-~~~~~~~~~l~~~~~ 329 (361)
| ++.|+++|+++|..++. +++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.+++++.+.
T Consensus 211 d-----~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~~ 284 (292)
T 2oi2_A 211 D-----AEGLGQILSQAHLHLKE-IGVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGA 284 (292)
T ss_dssp C-----HHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred C-----HHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecCchHHHHHHHHHHhcCc
Confidence 5 99999999999999997 4899999999999999999999999999999999999987 567788888876553
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.96 E-value=1.1e-27 Score=228.79 Aligned_cols=201 Identities=22% Similarity=0.298 Sum_probs=152.2
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
.+|+++.+.++||+++|||||||+++|++.|++++++.++++++++++|.++|+ ++|.++| +|++++++||. .++
T Consensus 97 ~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg-~D~~~~~~Gg~---~~~ 172 (317)
T 1kkh_A 97 KTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI-TDTSTITYKGI---LEI 172 (317)
T ss_dssp CSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHCSE---EEE
T ss_pred CCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHHHHhCCe---EEE
Confidence 479999999999999999999999999999999999999999999999999998 6788765 89999999983 333
Q ss_pred ecCCCceeeecCC--C----CceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 018058 91 DFNPIRTTDVQLP--A----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (361)
Q Consensus 91 ~~~~~~~~~i~~p--~----~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~ 164 (361)
++..+++++++ + ++.+++++|+.+.++... .+.+. .+
T Consensus 173 --~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T~~~---------------~~~~~---------------~~----- 215 (317)
T 1kkh_A 173 --KNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAEL---------------VNEVA---------------KI----- 215 (317)
T ss_dssp --SSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHH---------------HHHHH---------------TC-----
T ss_pred --cCCCceEecCCcccccccCcEEEEEECCCcCcHHHH---------------HHHHH---------------Hh-----
Confidence 34456666542 1 268999999986432110 00000 00
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHH
Q 018058 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (361)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~ 244 (361)
... . ...++.. + .+.
T Consensus 216 --------------------------~~~---~---------------------------~~~~~~~-------~--~~~ 230 (317)
T 1kkh_A 216 --------------------------ENK---D---------------------------EIFKEID-------K--VID 230 (317)
T ss_dssp --------------------------TTH---H---------------------------HHHHHHH-------H--HHH
T ss_pred --------------------------hcc---H---------------------------HHHHHHH-------H--HHH
Confidence 000 0 0001111 1 123
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHH
Q 018058 245 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNL 324 (361)
Q Consensus 245 ~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l 324 (361)
+++..+| ++.|+++|+++|..+++ +++++|+++++++.+++.| +|+||||+|+|||+++|++++.++++.++|
T Consensus 231 ~a~~~~d-----~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l 303 (317)
T 1kkh_A 231 EALKIKN-----KEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEEKEKELLKEL 303 (317)
T ss_dssp HHHHCCS-----HHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEEECCGGGHHHHHHHH
T ss_pred HHHHcCC-----HHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEEEechhhHHHHHHHH
Confidence 5566564 99999999999998886 4899999999999999999 999999999999999999876677766666
Q ss_pred H
Q 018058 325 K 325 (361)
Q Consensus 325 ~ 325 (361)
+
T Consensus 304 ~ 304 (317)
T 1kkh_A 304 N 304 (317)
T ss_dssp H
T ss_pred H
Confidence 5
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.96 E-value=1.7e-27 Score=225.27 Aligned_cols=219 Identities=14% Similarity=0.166 Sum_probs=168.2
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~-~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
+|+++.++++||+++|||||||+++|++.|++++++.++++++++++|.++|. .+|.++ ..|..++++||. +++.+
T Consensus 75 ~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~-~ddv~~~~~gg~--~~~~~ 151 (296)
T 1h72_C 75 KGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKH-ADNVAPAIFGGF--TMVTN 151 (296)
T ss_dssp CEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCC-CTTHHHHHHCSE--EEEEE
T ss_pred CCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCC-ccchHHHHhCCE--EEEEe
Confidence 58999999999999999999999999999999999999999999999999998 668777 255566899984 33334
Q ss_pred cCCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 018058 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (361)
Q Consensus 92 ~~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 171 (361)
..+..+.++++|+++.+++++|+++. +|. .+.
T Consensus 152 ~~~~~~~~~~~~~~~~~vl~~p~~~~---~T~------------~~~--------------------------------- 183 (296)
T 1h72_C 152 YEPLEVLHIPIDFKLDILIAIPNISI---NTK------------EAR--------------------------------- 183 (296)
T ss_dssp TTTTEEEEECCCSCCCEEEECCSSCC---CHH------------HHH---------------------------------
T ss_pred CCceEEEEEcCCCCeEEEEEeCCCCc---cHH------------HHH---------------------------------
Confidence 44555788888878999999998742 221 000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCC
Q 018058 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (361)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~ 251 (361)
+.+++. + +..+.+.+..|+..+.++|.++|
T Consensus 184 ------------~~l~~~-~-------------------------------------~~~~~~~~~~~~~~~~~al~~~d 213 (296)
T 1h72_C 184 ------------EILPKA-V-------------------------------------GLKDLVNNVGKACGMVYALYNKD 213 (296)
T ss_dssp ------------HTSCSC-C-------------------------------------CHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------HhccCc-C-------------------------------------cHHHHHHHHHHHHHHHHHHHcCC
Confidence 000000 0 01123344456677888998876
Q ss_pred CchHHHHHHHHHH--HHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHHHHH
Q 018058 252 SEEDKLKKLGDLM--NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 329 (361)
Q Consensus 252 ~~~~~~~~lg~lm--~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~~~~ 329 (361)
++.|+++| ++.|+.++. +++|+++++++.+++. ++|++|||+| +|+++|++++.++++.+++++.|.
T Consensus 214 -----~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~-a~ga~~sGsG--~~v~~l~~~~~~~~~~~~l~~~~~ 282 (296)
T 1h72_C 214 -----KSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK-VYGITISGSG--PSIIAFPKEEFIDEVENILRDYYE 282 (296)
T ss_dssp -----HHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT-EEEEEECTTS--SCEEEEECGGGHHHHHHHHHHHCS
T ss_pred -----HHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh-cceEEEecCC--hheEEEecHHHHHHHHHHHHHhcc
Confidence 99999999 667788774 6999999999999988 8999999888 599999966678888888876543
Q ss_pred hcccCCCcccCCCCcceEEEeeCCCCeeec
Q 018058 330 QSRIDRGVINNNDLGLYVFASKPSSGAAKF 359 (361)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 359 (361)
. +.+++|+.|++++
T Consensus 283 --------------~--~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 283 --------------N--TIRTEVGKGVEVV 296 (296)
T ss_dssp --------------C--EEEECBCCCCEEC
T ss_pred --------------C--ceeccCCCCeEeC
Confidence 1 1277887799875
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.93 E-value=2.8e-24 Score=204.38 Aligned_cols=218 Identities=17% Similarity=0.202 Sum_probs=154.8
Q ss_pred cCcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEE
Q 018058 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 90 (361)
Q Consensus 11 ~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~ 90 (361)
..+|++++|.++||.++|||||||+++|++.|++++++.++++++++++|.++| |. ..|...+++||. .+.
T Consensus 68 ~~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~e---g~---~ddv~~~~~GG~---~~~ 138 (298)
T 3hul_A 68 NLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIE---GH---PDNVAPAVLGNW---VVG 138 (298)
T ss_dssp TCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---SC---STTHHHHHHCSE---EEE
T ss_pred cCCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc---CC---cccCcccccCCE---EEE
Confidence 357999999999999999999999999999999999999999999999999999 22 256667889994 233
Q ss_pred ecCC--CceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhh
Q 018058 91 DFNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVA 168 (361)
Q Consensus 91 ~~~~--~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~ 168 (361)
..+. +.+.++++| ++.+++++|+++. +|. .+.+ .|
T Consensus 139 ~g~ge~~~~~~~~~p-~~~~vlv~p~~~~---sT~------------~a~~------------------~l--------- 175 (298)
T 3hul_A 139 AKLDGEDFYVRHLFP-DCALIAFIPKAEL---LTS------------ESRG------------------VL--------- 175 (298)
T ss_dssp EEETTEEEEEEECCC--CEEEEEECCCCC---C-----------------------------------------------
T ss_pred EeCCCcEEEEEcCCC-CeEEEEEECCCCC---CcH------------HHHH------------------HH---------
Confidence 3322 334466765 5999999998742 221 0000 00
Q ss_pred hhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHh
Q 018058 169 FACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS 248 (361)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~ 248 (361)
++. +. +.. .+.+..++..+..+|.
T Consensus 176 ------------------~~~-~~----------------------------------~~~---~~~~~~~~~~~~~al~ 199 (298)
T 3hul_A 176 ------------------PDT-LP----------------------------------FKE---AVQASSIANVMIAAIL 199 (298)
T ss_dssp ------------------CCE-EE----------------------------------HHH---HHHHHHHHHHHHHHHT
T ss_pred ------------------hhh-cc----------------------------------HHH---HHHHHHHHHHHHHHHH
Confidence 000 00 000 1112235566788898
Q ss_pred cCCCchHHHHHHHHHHHH--HHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCCcHHHHHHHHHH
Q 018058 249 SNLSEEDKLKKLGDLMND--SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 326 (361)
Q Consensus 249 ~~~~~~~~~~~lg~lm~~--sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~~~~l~~ 326 (361)
++| ++.|+++|++ .|+.++.. .+|+++++++.+++.|++|++|||+| +|+++|++++.++++.++|++
T Consensus 200 ~~d-----~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~~Ga~ga~~SGsG--ptv~al~~~~~a~~v~~~l~~ 269 (298)
T 3hul_A 200 RND-----MTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKNQGAYAACLSGAG--PTVLVFAPRNLANKLQTSLQT 269 (298)
T ss_dssp TTC-----HHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHTTTCCEEEECTTS--SCEEEEECGGGHHHHHHHHHT
T ss_pred cCC-----HHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHHCCCEEEEEeccc--hheEEEECHHHHHHHHHHHHh
Confidence 876 9999999973 47777754 58999999999999999999999888 899999986666666655543
Q ss_pred HHHhcccCCCcccCCCCcceEEEeeCCC-Ceeecc
Q 018058 327 QFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 360 (361)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 360 (361)
.+ ..+.++++++++ |++|..
T Consensus 270 ----~~----------~~~~~~~~~~~~~Ga~v~~ 290 (298)
T 3hul_A 270 ----LE----------IDADVLLLDVEGSGAEVFR 290 (298)
T ss_dssp ----TC----------CSSEEEEEEBCCCCCEEEE
T ss_pred ----cC----------CCcEEEEcccCCCceEEEe
Confidence 22 256899999985 999875
No 18
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.91 E-value=1.5e-23 Score=200.09 Aligned_cols=213 Identities=14% Similarity=0.128 Sum_probs=155.9
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|+++++.++||.++|||||||.++|++.+++++++.++++++++++|.++| .|...+++|| +.+...
T Consensus 87 ~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~---------~Dv~~~~~Gg---~~~~~g 154 (306)
T 3pyf_A 87 PDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG---------SDVPFALHGG---TALGTG 154 (306)
T ss_dssp CCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC---------TTHHHHHHBS---EEEECS
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCceeecCc---eEEEEe
Confidence 5899999999999999999999999999999999999999999999999988 5999999999 445555
Q ss_pred CCCceeeecCCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcC
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~ 172 (361)
+...+.+++.++++++++++|+++.+|... | +.+... +
T Consensus 155 ~ge~~~~l~~~~~~~~vl~~P~~~vsT~~a----~-----------~~l~~~---------------~------------ 192 (306)
T 3pyf_A 155 RGEELATVLSRNTFHWVLAFADSGLLTSAV----Y-----------NELDRL---------------R------------ 192 (306)
T ss_dssp SSSCCEEECCSSCEEEEEEECSSCCCHHHH----H-----------HHHHHH---------------H------------
T ss_pred eCCeEEEccCCCCcEEEEEECCCCCcHHHH----H-----------Hhhhhh---------------c------------
Confidence 555677888878899999999985332110 0 000000 0
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcCCC
Q 018058 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (361)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~ 252 (361)
.. .+ + .+ ..++..+..+|.++|
T Consensus 193 --------------~~----------------~~-------------------~----~~----~~~~~~~~~al~~~d- 214 (306)
T 3pyf_A 193 --------------EV----------------GD-------------------P----PR----LGEPGPVLAALAAGD- 214 (306)
T ss_dssp --------------HH----------------SC-------------------C----CC----CCCHHHHHHHHHHTC-
T ss_pred --------------cc----------------cc-------------------c----cc----ccCHHHHHHHHHhCC-
Confidence 00 00 0 00 012334567777665
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhCCCceeEeeccCCCceEEEEecCC-cHHHHHHHHHHHHHhc
Q 018058 253 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQFYQS 331 (361)
Q Consensus 253 ~~~~~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~Gak~sGaG~GG~vi~L~~~~-~~~~~~~~l~~~~~~~ 331 (361)
++.|++.|.+..+..+. ..+|+++++++.+++.|++|++|||+| +|+++|++.. .++++.++|++ .
T Consensus 215 ----~~~l~~~l~n~le~~~~---~~~P~l~~i~~~~~~~Ga~ga~mSGsG--ptvfal~~~~~~a~~~~~~l~~----~ 281 (306)
T 3pyf_A 215 ----PDQLAPLLGNEMQAAAV---SLDPALARALRAGVEAGALAGIVSGSG--PTCAFLCTSASSAIDVGAQLSG----A 281 (306)
T ss_dssp ----HHHHGGGCEETTHHHHH---HHCTHHHHHHHHHHHTTCSEEEECTTS--SEEEEEESSHHHHHHHHHHHHH----T
T ss_pred ----HHHHHHHhccchHHHHH---HhChHHHHHHHHHHhcCCCEEEEcCcc--hhheEEeCCHHHHHHHHHHHHh----c
Confidence 99999988543333332 258999999999999999999999887 9999999763 45555555543 2
Q ss_pred ccCCCcccCCCCcceEEEeeCCC-Ceeecc
Q 018058 332 RIDRGVINNNDLGLYVFASKPSS-GAAKFK 360 (361)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 360 (361)
+ +...++++++.+ |++|..
T Consensus 282 g----------~~~~v~~~~~~~~Ga~v~~ 301 (306)
T 3pyf_A 282 G----------VCRTVRVATGPVPGARVVS 301 (306)
T ss_dssp T----------SSSEEEEEEECCBCSEEC-
T ss_pred C----------CcceEEEeecCCCCCEEec
Confidence 2 356788888665 999864
No 19
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.89 E-value=7.4e-22 Score=188.81 Aligned_cols=215 Identities=15% Similarity=0.084 Sum_probs=149.6
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++|.+.++||.++|||||||+++|++.|++++++++++.++++++|.+++ .+...+++|| +..+..
T Consensus 91 ~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~---------G~~~~~~~GG---~~~~~~ 158 (317)
T 2gs8_A 91 AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFAS---------GSSSRSFFGP---VAAWDK 158 (317)
T ss_dssp CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH---------GGGGGGGSCS---EEEECT
T ss_pred CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhc---------chhHhhhcCC---hheEee
Confidence 6899999999999999999999999999999999999999999999998875 2345578999 334433
Q ss_pred CCCceeeecCCCCceEEEE--ecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 018058 93 NPIRTTDVQLPAGGTFVVA--HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~--~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 170 (361)
.+..+...++|.++.++++ +++.. .....+.|+.+ +
T Consensus 159 ~~~~~~~~~~~~~~~~~v~i~~~~~~---~~~tt~~~~~~----------~----------------------------- 196 (317)
T 2gs8_A 159 DSGAIYKVETDLKMAMIMLVLNAAKK---PISSREGMKLC----------R----------------------------- 196 (317)
T ss_dssp TTCCEEECCCCCCEEEEEEECCCSSC---CSCHHHHHHHH----------H-----------------------------
T ss_pred CCCceeEEEccccccEEEEEEECCCc---CcccHHHHHHH----------h-----------------------------
Confidence 3333334455556765444 44331 11111111100 0
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHHHHhcC
Q 018058 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (361)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~ 250 (361)
++. . ...+++.+. ..++..++.+|.++
T Consensus 197 ----------------~~~-~---------------------------------~~~~~~~~~---~~~~~~~~~al~~~ 223 (317)
T 2gs8_A 197 ----------------DTS-T---------------------------------TFDQWVEQS---AIDYQHMLTYLKTN 223 (317)
T ss_dssp ----------------HHC-T---------------------------------THHHHHHHH---HHHHHHHHHHHHTT
T ss_pred ----------------hcC-H---------------------------------HHHHHHHHH---HHHHHHHHHHHHcC
Confidence 000 0 001122221 35677888999988
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCC-------ChhHHHHHHH---HHhCCCceeEeeccCCCceEEEEecCCcHHHH
Q 018058 251 LSEEDKLKKLGDLMNDSHHSCSVLYECS-------CPELEELVNV---CRNNGALGARLTGAGWGGCVVALVKESIDSQF 320 (361)
Q Consensus 251 ~~~~~~~~~lg~lm~~sh~~lr~~~~vs-------~peld~lv~~---a~~~Ga~Gak~sGaG~GG~vi~L~~~~~~~~~ 320 (361)
| ++.||++|+++|..|.+.|..+ .|.+.++++. +++.|+.++.|||+| ||+++|++++..+++
T Consensus 224 d-----~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaG--ptv~~l~~~~~~~~v 296 (317)
T 2gs8_A 224 N-----FEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAG--PNVKVLCLEKDLAQL 296 (317)
T ss_dssp C-----HHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEGGGHHHH
T ss_pred C-----HHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCC--CeEEEEEcHHHHHHH
Confidence 6 9999999999988888765444 4445666654 344899999999887 999999987767777
Q ss_pred HHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCCeee
Q 018058 321 ILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 358 (361)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 358 (361)
.+++++ ...+|++++++|++|
T Consensus 297 ~~~l~~-----------------~~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 297 AERLGK-----------------NYRIIVSKTKDLPDV 317 (317)
T ss_dssp HHHHHT-----------------TSEEEEEEBCCCCCC
T ss_pred HHHHhc-----------------CCeEEEEecCCCCCC
Confidence 776654 126999999999986
No 20
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.89 E-value=1.1e-21 Score=189.19 Aligned_cols=222 Identities=14% Similarity=0.113 Sum_probs=155.3
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++|.+.++||.++|||||||.++|++.|++++++++++.++++++|.++| .|...+++||. ..+..
T Consensus 93 ~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~---------g~~~~~~~GG~---~~~~~ 160 (332)
T 3qt5_A 93 LHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGS---------GSASRSIFGGF---AEWEK 160 (332)
T ss_dssp CEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHC---------GGGGGGGSCSE---EEEEC
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc---------CCchhhhcCCe---EEEec
Confidence 5899999999999999999999999999999999999999999999999986 25566889993 34332
Q ss_pred -CC---Cceeeec---CCCCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 018058 93 -NP---IRTTDVQ---LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (361)
Q Consensus 93 -~~---~~~~~i~---~p~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~ 165 (361)
.. ....+++ .+++++++++.+.....+.++ |. .++..
T Consensus 161 g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss-------~~--------~~~~~--------------------- 204 (332)
T 3qt5_A 161 GHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSS-------RS--------GMSLT--------------------- 204 (332)
T ss_dssp CSSTTTCEEEEECCTTGGGGEEEEEECCCCCCCC--C-------HH--------HHHHH---------------------
T ss_pred CCCCccceeeecccccCCCCcEEEEEEEcCCCCCCch-------HH--------HHHHh---------------------
Confidence 11 1235554 335788888888764211111 10 00000
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHH
Q 018058 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 245 (361)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~ 245 (361)
.+.. .. ..++..+ + ..++..++.
T Consensus 205 --------------------~~~s-~~---------------------------------~~~~v~~-~--~~~~~~l~~ 227 (332)
T 3qt5_A 205 --------------------RDTS-RF---------------------------------YQYWLDH-V--DEDLNEAKE 227 (332)
T ss_dssp --------------------HHHC-TT---------------------------------HHHHHHH-H--HHHHHHHHH
T ss_pred --------------------hhcC-hh---------------------------------HHHHHHH-H--HHHHHHHHH
Confidence 0000 00 0011111 0 126777889
Q ss_pred HHhcCCCchHHHHHHHHHHHHH----HHHhhhhcC---CCChhHHHHHHHHH---hCCCceeEeeccCCCceEEEEecCC
Q 018058 246 TVSSNLSEEDKLKKLGDLMNDS----HHSCSVLYE---CSCPELEELVNVCR---NNGALGARLTGAGWGGCVVALVKES 315 (361)
Q Consensus 246 al~~~~~~~~~~~~lg~lm~~s----h~~lr~~~~---vs~peld~lv~~a~---~~Ga~Gak~sGaG~GG~vi~L~~~~ 315 (361)
+|.++| ++.|+++|.++ |+.++..+. ..+|+++++++.++ +.|++|+.+||+| +|+++|++++
T Consensus 228 Al~~~D-----~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaG--Ptv~~l~~~~ 300 (332)
T 3qt5_A 228 AVKNQD-----FQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG--PNVKVLVEKK 300 (332)
T ss_dssp HHHHTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS--SCEEEEEEHH
T ss_pred HHHcCC-----HHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCC--CcEEEEECHH
Confidence 999876 99999999844 455554321 14799999999885 7899999999776 9999999877
Q ss_pred cHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEe-eCCCCeeecc
Q 018058 316 IDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFAS-KPSSGAAKFK 360 (361)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~Ga~v~~ 360 (361)
+++++.++|++.|. ..+++++ +|+.|+++++
T Consensus 301 ~a~~v~~~l~~~~~--------------~~~~~v~~~~g~G~~~~~ 332 (332)
T 3qt5_A 301 NKQAVMEQFLKVFD--------------ESKIIASDIISSGVEIIK 332 (332)
T ss_dssp HHHHHHHHHHTTSC--------------GGGEEEEEBCSSCCEECC
T ss_pred HHHHHHHHHHHhCC--------------CceEEEeccccCCcEecC
Confidence 77777777765442 3468888 9999999864
No 21
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.83 E-value=1.4e-20 Score=176.38 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=77.1
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|+++++.++||+++|||||||+++|++.|++++++.++ +++++|.++| .|..++++|| +.+...
T Consensus 75 ~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g---------~dv~~~~~Gg---~~~~~g 139 (275)
T 1uek_A 75 GGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLG---------ADVPFFLLGR---GAEARG 139 (275)
T ss_dssp CEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHC---------TTHHHHHHCS---EEEEET
T ss_pred CCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhC---------CChHHHhcCC---eEEEEc
Confidence 689999999999999999999999999999999999988 9999999987 4999999999 445555
Q ss_pred CCCceeeecCCCCceEEEEecCCc
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~ 116 (361)
+...+++++ ++++++++++|+++
T Consensus 140 ~g~~~~~l~-~~~~~~vl~~p~~~ 162 (275)
T 1uek_A 140 VGERLKPLA-LPPVPAVVFFPGLR 162 (275)
T ss_dssp TTTEEEEEC-CCCEEEEEEECCCC
T ss_pred cCceeEEcc-CCCcEEEEEeCCCC
Confidence 555677887 66899999999875
No 22
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.82 E-value=2.5e-20 Score=174.46 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=80.0
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|++|.++++||+++|||||||.++|++.|++++++.+++.++++++|.++| .|..++++|| +.+...
T Consensus 80 ~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e---------~dv~~~~~gg---~~~~~g 147 (271)
T 2v8p_A 80 INYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSIS---------ADAPFFLLGK---SAIGRG 147 (271)
T ss_dssp CCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHC---------TTTGGGGTCS---EEEEET
T ss_pred CCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---------CCHHHHhcCC---eEEEEE
Confidence 6899999999999999999999999999999999999999999999999998 3888899998 445554
Q ss_pred CCCceeeecCCCCceEEEEecCCc
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAE 116 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~ 116 (361)
+...++++++|.++.+++++|+++
T Consensus 148 ~g~~~~~l~~~~~~~~vl~~p~~~ 171 (271)
T 2v8p_A 148 KGEVLEPVETEISGKITLVIPQVS 171 (271)
T ss_dssp TTTEEEECCCCCCSEEEEEECSSC
T ss_pred cCCEEEEccCCCCcEEEEEeCCCC
Confidence 455577777444899999999874
No 23
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.78 E-value=1.5e-17 Score=164.84 Aligned_cols=205 Identities=13% Similarity=0.116 Sum_probs=138.5
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
..|++|.+.++||.++|||||||.++|++.|++++++++++.++|+++|.+++ .+...+++||. ..++
T Consensus 121 ~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~---------Gs~~~sl~GG~---v~~~ 188 (416)
T 1fi4_A 121 QWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGS---------GSACRSLFGGY---VAWE 188 (416)
T ss_dssp GSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH---------GGGGGGGSSSE---EEEE
T ss_pred CCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC---------CchheEeeCCc---EEEe
Confidence 46899999999999999999999999999999999999999999999998875 24566899993 3343
Q ss_pred cC------CCceeeecC---CCCceEE--EEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccch
Q 018058 92 FN------PIRTTDVQL---PAGGTFV--VAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 160 (361)
Q Consensus 92 ~~------~~~~~~i~~---p~~~~~l--l~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~ 160 (361)
.. .....+++. .+++.++ +.+++.. .....+.|+.++
T Consensus 189 ~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~---~~sst~~~~~~~----------------------------- 236 (416)
T 1fi4_A 189 MGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKK---DVSSTQGMQLTV----------------------------- 236 (416)
T ss_dssp CCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSC---CCCHHHHHHHHH-----------------------------
T ss_pred cCCcCCCCCceeEEecCccCCcccEEEEEEECCCCC---CcCCHHHHHHHh-----------------------------
Confidence 21 122345543 2366643 3443221 111001111000
Q ss_pred hhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHH
Q 018058 161 DVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 240 (361)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv 240 (361)
+.. . ...+++.++. ..++
T Consensus 237 --------------------------~~~-~---------------------------------~~~~~~~~i~--~~~~ 254 (416)
T 1fi4_A 237 --------------------------ATS-E---------------------------------LFKERIEHVV--PKRF 254 (416)
T ss_dssp --------------------------HHC-S---------------------------------HHHHHHHTHH--HHHH
T ss_pred --------------------------hcC-H---------------------------------hHHHHHHHHH--HHHH
Confidence 000 0 0011122211 2467
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhhhc-------CCCChhHHHHHHHHHh----CC-CceeEeeccCCCceE
Q 018058 241 HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-------ECSCPELEELVNVCRN----NG-ALGARLTGAGWGGCV 308 (361)
Q Consensus 241 ~~~~~al~~~~~~~~~~~~lg~lm~~sh~~lr~~~-------~vs~peld~lv~~a~~----~G-a~Gak~sGaG~GG~v 308 (361)
..++.||.++| ++.||++|.++|..+...+ ....|....+++.+.+ .| +.++.|||+| +++
T Consensus 255 ~~l~~AL~~gD-----~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv 327 (416)
T 1fi4_A 255 EVMRKAIVEKD-----FATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNA 327 (416)
T ss_dssp HHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCE
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcE
Confidence 77889999876 9999999987766665432 1245677888877644 38 7888999887 999
Q ss_pred EEEecCCcHHHHHHHHHHHHH
Q 018058 309 VALVKESIDSQFILNLKEQFY 329 (361)
Q Consensus 309 i~L~~~~~~~~~~~~l~~~~~ 329 (361)
++|++++..+++.+++++.|.
T Consensus 328 ~al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 328 VLYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp EEEEEGGGHHHHHHHHHHHHT
T ss_pred EEEECHHHHHHHHHHHHHhcc
Confidence 999987778889999988775
No 24
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.75 E-value=1.2e-16 Score=152.87 Aligned_cols=201 Identities=15% Similarity=0.072 Sum_probs=136.1
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeE
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSST----VALMAAFGVEV-PKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~----~al~~l~~~~l-~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~ 87 (361)
.|++|.+.++||.++|||||||.+||++ .|+++++|+++ +++|+.++|..++ .+...|++|| +
T Consensus 91 ~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs---------Gsaa~si~GG---~ 158 (323)
T 3lto_A 91 GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS---------GSSCRSFYAP---W 158 (323)
T ss_dssp CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC---------GGGGGGGSCS---E
T ss_pred CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC---------CCcchhhhCC---E
Confidence 6999999999999999999999999999 99999999999 9999999997765 2445689999 3
Q ss_pred EEEecCCCceeeec-CCCCceEEEEe-cCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 018058 88 ELIDFNPIRTTDVQ-LPAGGTFVVAH-SLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (361)
Q Consensus 88 ~~~~~~~~~~~~i~-~p~~~~~ll~~-s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~~~ 165 (361)
+.+... ..+++. .++++.++++. +..+. ..++. .+.+.
T Consensus 159 v~~~~g--~~~~l~~~~~~l~~~v~vi~~~~~-~vsT~------------~~~~~------------------------- 198 (323)
T 3lto_A 159 ALWTGD--KVSAIDLPYKDLLHQVIVISSQEK-EIPSR------------VAHKL------------------------- 198 (323)
T ss_dssp EEEETT--EEEECCCSCCSCEEEEEECCCCTT-CCCHH------------HHHHH-------------------------
T ss_pred EEEecC--cEEEccCCCCCCeEEEEEECCCCC-CCCCH------------HHHhh-------------------------
Confidence 333321 334442 22456664444 32210 11110 00000
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHHHH
Q 018058 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 245 (361)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~ 245 (361)
+...++. + .+..+ ...++..++.
T Consensus 199 --------------------l~~~~~~------------~----------------------~~~~~---~~~~~~~l~~ 221 (323)
T 3lto_A 199 --------------------VKTSPFY------------E----------------------TRSER---AEANLKLLLN 221 (323)
T ss_dssp --------------------GGGSTTT------------T----------------------THHHH---HHHHHHHHHH
T ss_pred --------------------cccChhH------------H----------------------HHHHH---hHHHHHHHHH
Confidence 0000000 0 00000 1246778889
Q ss_pred HHhcCCCchHHHHHHHHHHHHH----HHHhhhh--c-CCCChhHHHHHHHHHh----CCCceeEeeccCCCceEEEEecC
Q 018058 246 TVSSNLSEEDKLKKLGDLMNDS----HHSCSVL--Y-ECSCPELEELVNVCRN----NGALGARLTGAGWGGCVVALVKE 314 (361)
Q Consensus 246 al~~~~~~~~~~~~lg~lm~~s----h~~lr~~--~-~vs~peld~lv~~a~~----~Ga~Gak~sGaG~GG~vi~L~~~ 314 (361)
+|.++| ++.|+++|..+ |+.++.. | -.-.|+..++++.+.+ .|++++.++||| +++++|+++
T Consensus 222 AL~~gD-----~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~~l~~~ 294 (323)
T 3lto_A 222 AFENKD-----WTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVHLLYRS 294 (323)
T ss_dssp HHHTTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEEEEECG
T ss_pred HHHcCC-----HHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeEEEEec
Confidence 999886 99999987644 5544442 1 2357877777777755 689999999999 889999988
Q ss_pred CcHHHHHHHHHHHHH
Q 018058 315 SIDSQFILNLKEQFY 329 (361)
Q Consensus 315 ~~~~~~~~~l~~~~~ 329 (361)
+..+++.+.|++.+.
T Consensus 295 ~~~~~v~~~l~~~~~ 309 (323)
T 3lto_A 295 DQTDLARQFKSDHLV 309 (323)
T ss_dssp GGHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhH
Confidence 889999999987664
No 25
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.74 E-value=3.1e-16 Score=153.70 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=132.5
Q ss_pred CcceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEe
Q 018058 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (361)
Q Consensus 12 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~ 91 (361)
.+|++|.+.++||.++|||||||.++|++.|++++++++ ++++++|.+.+ .|...|++||. +.+.
T Consensus 95 ~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~---------Gsva~s~~GG~---v~~~ 159 (380)
T 2hke_A 95 NKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGS---------GSACRSAFGGF---VIWN 159 (380)
T ss_dssp TCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHC---------GGGGGGGSSSE---EEEE
T ss_pred CCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcC---------cceeeehhCCe---EEEe
Confidence 368999999999999999999999999999999999977 88999998765 25667899993 3333
Q ss_pred cC------CCceeeecCC---CCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhh
Q 018058 92 FN------PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 162 (361)
Q Consensus 92 ~~------~~~~~~i~~p---~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~ 162 (361)
.. .....+++.+ +++.++++.+..+.....+ + .+. .+++
T Consensus 160 ~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~ss-------t-~~~---r~~~--------------------- 207 (380)
T 2hke_A 160 KGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSS-------T-KGM---QQSL--------------------- 207 (380)
T ss_dssp CCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCH-------H-HHH---HHHH---------------------
T ss_pred cCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCC-------H-HHH---HHHH---------------------
Confidence 21 1234566542 3555444432211000111 0 000 0000
Q ss_pred hhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHH
Q 018058 163 EGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA 242 (361)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~ 242 (361)
+..+. + ..+..++ ...++..
T Consensus 208 ------------------------~~~~~----~------------------------------~~~~~~~--~~~~~~~ 227 (380)
T 2hke_A 208 ------------------------KTSPL----M------------------------------KKRISET--VPERMKI 227 (380)
T ss_dssp ------------------------HHCTT----H------------------------------HHHHHTH--HHHHHHH
T ss_pred ------------------------hcChh----H------------------------------HHHHHHH--HHHHHHH
Confidence 00000 0 0011110 1246667
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHH----HHHhhhh--c-CCCChhHHHHHHHHHhC----C-CceeEeeccCCCceEEE
Q 018058 243 FKDTVSSNLSEEDKLKKLGDLMNDS----HHSCSVL--Y-ECSCPELEELVNVCRNN----G-ALGARLTGAGWGGCVVA 310 (361)
Q Consensus 243 ~~~al~~~~~~~~~~~~lg~lm~~s----h~~lr~~--~-~vs~peld~lv~~a~~~----G-a~Gak~sGaG~GG~vi~ 310 (361)
++.+|.++| ++.|+++|.++ |+..+.. | ....|....+++.+.+. | +.++.+||+| +++++
T Consensus 228 l~~Al~~~D-----~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv~~ 300 (380)
T 2hke_A 228 ASRAIKARD-----FATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--ANCFL 300 (380)
T ss_dssp HHHHHHHTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEEE
T ss_pred HHHHHHcCC-----HHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--CcEEE
Confidence 889999876 99999999654 4433332 1 23578888888886654 8 8889999776 99999
Q ss_pred EecCCcHHHHHHHHHHHHH
Q 018058 311 LVKESIDSQFILNLKEQFY 329 (361)
Q Consensus 311 L~~~~~~~~~~~~l~~~~~ 329 (361)
|++++.++++.+.+++.|.
T Consensus 301 l~~~~~~~~v~~~l~~~~~ 319 (380)
T 2hke_A 301 FVLKEDLPEAVAMLMEHFP 319 (380)
T ss_dssp EEEGGGHHHHHHHHHHHSC
T ss_pred EECHHHHHHHHHHHHHhcc
Confidence 9987778889999987765
No 26
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.74 E-value=3.1e-18 Score=161.45 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=79.6
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
+|+++.+.++||+++|||||||+++|++.|++++++.+++.++++++|.++| .|..++++||. .+...
T Consensus 88 ~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e---------~dv~~~~~gg~---~~~~g 155 (283)
T 2ww4_A 88 SGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLG---------ADVPVFVRGHA---AFAEG 155 (283)
T ss_dssp CEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTC---------TTHHHHHHTBC---EEEET
T ss_pred CceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---------CCHHHhhcCCe---EEEEe
Confidence 6899999999999999999999999999999999999999999999999988 49999999993 35555
Q ss_pred CCCceeeecCCCCceEEEEecCCch
Q 018058 93 NPIRTTDVQLPAGGTFVVAHSLAES 117 (361)
Q Consensus 93 ~~~~~~~i~~p~~~~~ll~~s~~~~ 117 (361)
+...++++++| ++.+++++|+++.
T Consensus 156 ~g~~~~~l~~~-~~~~vl~~p~~~~ 179 (283)
T 2ww4_A 156 VGEILTPVDPP-EKWYLVAHPGVSI 179 (283)
T ss_dssp TTTEEEECCCC-CCEEEEECCSCCC
T ss_pred cCccceEcCCC-CcEEEEEeCCCCC
Confidence 55556777766 7899999998753
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.64 E-value=8.2e-15 Score=143.42 Aligned_cols=204 Identities=13% Similarity=0.132 Sum_probs=136.5
Q ss_pred cceeEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCchhHHHHHhhcCCeEEEEec
Q 018058 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (361)
Q Consensus 13 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~l~~~ela~la~~~E~~~g~~~G~~D~~~~~~Gg~~~~~~~~~ 92 (361)
.+++|.+.++||.++|||||||.++|++.|+++++++ .+++.++|..++ .+...|+||| ++.+..
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s---------Gs~~~s~~GG---~v~w~~ 186 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS---------GSACRSLYGG---FVEWQM 186 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC---------GGGGGGGSSS---EEEECC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC---------CCcchHhhCC---EEEEEe
Confidence 5899999999999999999999999999999999997 468888888765 2445689999 444422
Q ss_pred C------CCceeeecCC---CCceEEEEecCCchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhh
Q 018058 93 N------PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVE 163 (361)
Q Consensus 93 ~------~~~~~~i~~p---~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~d~~ 163 (361)
. +....+++.+ +++.++++.+.....+.++ | ..++. .+
T Consensus 187 ~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsS-------T-~~mr~---~l---------------------- 233 (414)
T 3f0n_A 187 GEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGS-------T-VGMQT---SV---------------------- 233 (414)
T ss_dssp CSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCH-------H-HHHHH---HH----------------------
T ss_pred ccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCc-------h-HHHHh---hc----------------------
Confidence 1 1223455422 3677777664322111110 0 00000 00
Q ss_pred hhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhHHHhhhhHhHHHHHhHHHhHhHHHHHH
Q 018058 164 GLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAF 243 (361)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~ 243 (361)
+.. .+ ...+..++ -..|+..+
T Consensus 234 -----------------------~ts----------------~~------------------~~~~v~~~--~~~~~~~l 254 (414)
T 3f0n_A 234 -----------------------ETS----------------TL------------------LKFRAESV--VPERMKEM 254 (414)
T ss_dssp -----------------------HHC----------------HH------------------HHHHHHHT--HHHHHHHH
T ss_pred -----------------------ccC----------------cc------------------HHHHHHHH--HHHHHHHH
Confidence 000 00 00111110 12577888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHH----HHHHhhhh--c-CCCChhHHHHHHHHHhC-----CCceeEeeccCCCceEEEE
Q 018058 244 KDTVSSNLSEEDKLKKLGDLMND----SHHSCSVL--Y-ECSCPELEELVNVCRNN-----GALGARLTGAGWGGCVVAL 311 (361)
Q Consensus 244 ~~al~~~~~~~~~~~~lg~lm~~----sh~~lr~~--~-~vs~peld~lv~~a~~~-----Ga~Gak~sGaG~GG~vi~L 311 (361)
+.||.++| |+.||+++.. -|+.+++- | -..+|+..++++.+.+. |++++.++||| +++++|
T Consensus 255 ~~AL~~gD-----~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAG--Pnv~vl 327 (414)
T 3f0n_A 255 TRCIQEQD-----FQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAG--PNAVIF 327 (414)
T ss_dssp HHHHHTTC-----HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEEEE
T ss_pred HHHHHcCC-----HHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCC--CCEEEE
Confidence 99999886 9999998763 46666652 1 23578888888887763 79999999999 899999
Q ss_pred ecCCcHHHHHHHHHHHHHh
Q 018058 312 VKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~ 330 (361)
+.+++.+++.+.|++.|..
T Consensus 328 ~~~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 328 TLEDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp EEHHHHHHHHHHHHHHSCC
T ss_pred EecccHHHHHHHHHHhcCC
Confidence 9888899999999876654
No 28
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=79.65 E-value=3.5 Score=32.65 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=40.9
Q ss_pred ChhHHHHHHHHHhCCCceeEeeccCCCc-----eEEEEecCCcHHHHHHHHHHHHHhcc
Q 018058 279 CPELEELVNVCRNNGALGARLTGAGWGG-----CVVALVKESIDSQFILNLKEQFYQSR 332 (361)
Q Consensus 279 ~peld~lv~~a~~~Ga~Gak~sGaG~GG-----~vi~L~~~~~~~~~~~~l~~~~~~~~ 332 (361)
...+|.+.+...+.|..|.+++-.|++| .+...++++.++++++.|.+.-+.+.
T Consensus 15 p~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR~ 73 (114)
T 3m05_A 15 DKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTRE 73 (114)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCce
Confidence 4567899998889999998887665433 34555677899999999998766543
No 29
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=39.53 E-value=73 Score=24.52 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=38.1
Q ss_pred ChhHHHHHHHHHhCCCceeE---eeccCCC--c-----------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018058 279 CPELEELVNVCRNNGALGAR---LTGAGWG--G-----------------CVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 279 ~peld~lv~~a~~~Ga~Gak---~sGaG~G--G-----------------~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
...++.+.+.+.+.|+.|.. ..|-|-. . .+..+++++.++.+++.|++..+.
T Consensus 10 ~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 83 (116)
T 1vfj_A 10 PEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART 83 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 45678999999888876643 3344421 1 588888888999999999987753
No 30
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=38.29 E-value=86 Score=23.95 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHhCCCceeEe---eccCC--Cc-----------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018058 278 SCPELEELVNVCRNNGALGARL---TGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 278 s~peld~lv~~a~~~Ga~Gak~---sGaG~--GG-----------------~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
....++.+.+.+.+.|+.|..+ .|-|- |. -+..+++++.++++++.|++..+.
T Consensus 9 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 2eg2_A 9 KPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQT 83 (112)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3456789999888888766433 33332 11 366777778999999999988753
No 31
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=36.75 E-value=76 Score=24.66 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHhCCCceeEe---eccCC--Cce-----------------EEEEecCCcHHHHHHHHHHHHHh
Q 018058 278 SCPELEELVNVCRNNGALGARL---TGAGW--GGC-----------------VVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 278 s~peld~lv~~a~~~Ga~Gak~---sGaG~--GG~-----------------vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
....++.+.+.+.+.|+.|..+ .|-|- |-+ +..+++++.++++++.|++..+.
T Consensus 11 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 11 RPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3456889999999988777533 33332 111 67778888999999999988753
No 32
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=30.16 E-value=1.4e+02 Score=22.75 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHHhCCCceeE---eeccCCC-c------------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018058 278 SCPELEELVNVCRNNGALGAR---LTGAGWG-G------------------CVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 278 s~peld~lv~~a~~~Ga~Gak---~sGaG~G-G------------------~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
....++.+.+.+.+.|+.|.. ..|-|-. | -+..+++++.++++++.|++..+.
T Consensus 11 r~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 85 (114)
T 3bzq_A 11 KPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAART 85 (114)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 345678899988888876643 3343421 2 366777788999999999988753
No 33
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=30.14 E-value=1.5e+02 Score=23.63 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=37.2
Q ss_pred ChhHHHHHHHHHhCCCceeEe---eccCCCc--------------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018058 279 CPELEELVNVCRNNGALGARL---TGAGWGG--------------------CVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 279 ~peld~lv~~a~~~Ga~Gak~---sGaG~GG--------------------~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
...++.+.+.+.+.|+.|..+ .|-|-.+ .+..+++++.++.+++.|.+..+.
T Consensus 22 ~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~t 96 (135)
T 2o66_A 22 PWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGART 96 (135)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 456788999888888777533 4444321 366777788999999999988764
No 34
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=29.95 E-value=1.5e+02 Score=22.52 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHhCCCceeEe---eccCCC-c------------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018058 278 SCPELEELVNVCRNNGALGARL---TGAGWG-G------------------CVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 278 s~peld~lv~~a~~~Ga~Gak~---sGaG~G-G------------------~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
....++.+.+.+.+.|+.|..+ .|-|-. | -+..+++++.++.+++.|++..+.
T Consensus 9 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 1hwu_A 9 KPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAART 83 (112)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 3456789999988888776543 444431 2 445556677899999999987753
No 35
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=29.01 E-value=1.9e+02 Score=22.06 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=37.5
Q ss_pred CChhHHHHHHHHHhCCCcee---EeeccCCCc-------------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018058 278 SCPELEELVNVCRNNGALGA---RLTGAGWGG-------------------CVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 278 s~peld~lv~~a~~~Ga~Ga---k~sGaG~GG-------------------~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
....++.+.+++.+.|+.|. ...|-|-.. -+..+++++.++++++.|++..+.
T Consensus 13 r~~~~~~v~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 87 (116)
T 2ns1_B 13 KPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYT 87 (116)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 34567899998888877664 444555322 445566778899999999988764
No 36
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=27.30 E-value=1.6e+02 Score=22.53 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHhCCCceeE---eeccCC--Cc-----------------eEEEEecCCcHHHHHHHHHHHHHh
Q 018058 278 SCPELEELVNVCRNNGALGAR---LTGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQ 330 (361)
Q Consensus 278 s~peld~lv~~a~~~Ga~Gak---~sGaG~--GG-----------------~vi~L~~~~~~~~~~~~l~~~~~~ 330 (361)
....++.+.+.+.+.|+.|.. ..|-|- |. -+..+++++.++.+++.|++..+.
T Consensus 11 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~t 85 (114)
T 2gw8_A 11 KPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARS 85 (114)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 345678999999888876643 333332 11 445556777899999999988753
No 37
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=25.02 E-value=85 Score=24.44 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHHhCCCceeEe----eccCCCc---------------eEEEEe-cCCcHHHHHHHHHHH
Q 018058 279 CPELEELVNVCRNNGALGARL----TGAGWGG---------------CVVALV-KESIDSQFILNLKEQ 327 (361)
Q Consensus 279 ~peld~lv~~a~~~Ga~Gak~----sGaG~GG---------------~vi~L~-~~~~~~~~~~~l~~~ 327 (361)
-|-.++|++.+++.|+-|+-+ .|-|..| -++-++ ++++.+.+.+.+++-
T Consensus 29 ~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~ 97 (114)
T 1o51_A 29 KPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNI 97 (114)
T ss_dssp EEHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTC
T ss_pred eEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 467799999999999888765 4444333 233333 334666777666543
No 38
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=23.88 E-value=1.1e+02 Score=23.91 Aligned_cols=52 Identities=23% Similarity=0.409 Sum_probs=35.9
Q ss_pred CChhHHHHHHHHHhCCCceeEe---eccCCCc-----------eEEEEecCCcHHHHHHHHHHHHH
Q 018058 278 SCPELEELVNVCRNNGALGARL---TGAGWGG-----------CVVALVKESIDSQFILNLKEQFY 329 (361)
Q Consensus 278 s~peld~lv~~a~~~Ga~Gak~---sGaG~GG-----------~vi~L~~~~~~~~~~~~l~~~~~ 329 (361)
-.+.++.+++++.+.|+-|.-+ .|-|..+ -+..+++++.++.+++.|.+..+
T Consensus 33 r~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~ 98 (119)
T 2cz4_A 33 ESLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYF 98 (119)
T ss_dssp EGGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhc
Confidence 3567899999999988766533 3333211 35566666789999999987654
Done!