RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018058
(361 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 92.4 bits (229), Expect = 5e-23
Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 22/168 (13%)
Query: 192 TALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251
T LDI+ + E AN+ D L +RA H E R +
Sbjct: 36 TRLDIQSLGELSNEEFDANTDLIGDET-------LIKRARHAVYENNRTKIAQ-----KA 83
Query: 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVA 310
L K G+L+N SH S YE + EL+ L + G LGAR+TGAG+GGC +A
Sbjct: 84 FVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIA 143
Query: 311 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 358
LV S F + + + + + ++ SG+ K
Sbjct: 144 LVAHDNVSAFRKAVGQVYEEVV---------GYPASFYVAQIGSGSTK 182
Score = 30.4 bits (68), Expect = 0.19
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 108 FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK 148
V+ ++ S YN R E R + +L ++
Sbjct: 4 IVIMNTNK---PRALTESKYNERFAETREALKRMQTRLDIQ 41
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 91.3 bits (226), Expect = 9e-23
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 226 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 285
+ +++ E RV +D + +E ++K+G ++ +H + Y SC EL+
Sbjct: 54 HRKFFSYIVRENARVLEVRDAL-----KEGDIEKVGKILTTAHWDLAENYRVSCEELDFF 108
Query: 286 VNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGL 345
V GA GARLTGAG+GG +ALV + + ++
Sbjct: 109 VKKAMELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYLA---------KFSWKA 159
Query: 346 YVFASKPSSGA 356
F KPS G
Sbjct: 160 KYFVVKPSDGV 170
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 85.1 bits (210), Expect = 2e-20
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 215 LDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL 274
L+ + +RA HV E +R + + G LM +SH S
Sbjct: 47 LEAARDLVSKEGFRRARHVVGEIRRTAQAAAAL-----RRGDYRAFGRLMVESHRSLRDD 101
Query: 275 YECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 333
YE SCPEL++LV G G+R+TG G+GGC V L++ S + +++E +
Sbjct: 102 YEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYG---- 157
Query: 334 DRGVINNNDLGLYVFASKPSSGA 356
+ S+ + GA
Sbjct: 158 ---------GTATFYLSQAADGA 171
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 74.9 bits (183), Expect = 3e-16
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGG 73
F+ + LG GLSSS + ++ L AQ+ + E F G G
Sbjct: 124 FSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGI 183
Query: 74 MDQAISIMAKSGFAELIDFNPIRTTDVQLP 103
MDQ IS+M + G A LID + T+ V L
Sbjct: 184 MDQFISLMGQKGHALLIDCRSLETSLVPLS 213
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 72.0 bits (176), Expect = 9e-16
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 228 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN 287
+ E +RV ++ L +LM+ + H + L++L
Sbjct: 41 TSIDAISLECERVLGEMAA----APVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQ 95
Query: 288 VCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF 328
V +G ++LTGAG GGC + L+K ++ + K+
Sbjct: 96 VTAAHGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 135
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 70.7 bits (172), Expect = 3e-15
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGG 73
+ LG+GLSSS +F L + + + + A L + E F+G G
Sbjct: 86 LKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGI 145
Query: 74 MDQAISIMAKSGFAELIDFNPIRTTDVQLP 103
+DQ + K +D ++ + P
Sbjct: 146 LDQFAVVFGKKDNVIFLDTQTLQYEYIPFP 175
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 67.6 bits (164), Expect = 6e-14
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 27 SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSG 85
SGLSSS + V L F + VP+ E+ QL + E +IG SG +DQ +
Sbjct: 126 SGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVK 185
Query: 86 FAELIDFNPIRTTDV 100
A +D N ++ V
Sbjct: 186 KAIELDCNTLKYEMV 200
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 59.2 bits (143), Expect = 2e-11
Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 195 DIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 254
+ E+ + I + + ++ E +V + L +
Sbjct: 3 EFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKV------IDEALKIK 56
Query: 255 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE 314
+ + G LM +H S P+L+ +V++ G GA+LTGAG GGCV+ LV E
Sbjct: 57 N-KEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFGF-GAKLTGAGGGGCVIILVNE 113
Query: 315 SIDSQFILNLKEQFYQ 330
+ + + L ++ +
Sbjct: 114 EKEKELLKELNKEDVR 129
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 48.7 bits (115), Expect = 1e-07
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 28 GLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87
GL SS + + A+ + E+ EIA+L E+ I ++ D +
Sbjct: 113 GLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITY---KGI 169
Query: 88 ELIDFNPIR 96
I N R
Sbjct: 170 LEIKNNKFR 178
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 135
Score = 42.8 bits (100), Expect = 7e-06
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 253 EEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 311
E+ K +K+ + + + L + P L +L ++ A A+ +GAG G C +AL
Sbjct: 50 EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIAL 108
Query: 312 VKESIDSQFILN 323
++ ++ + N
Sbjct: 109 SFDAQSTKTLKN 120
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 43.3 bits (101), Expect = 1e-05
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 15/82 (18%)
Query: 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV---------------EVPKKEIAQL 59
+ + G+GL SS A+ AL+ A E K I +
Sbjct: 129 LDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKW 188
Query: 60 TCECEQFIGTQSGGMDQAISIM 81
E E+ I G+D ++S
Sbjct: 189 AYEGERVIHGNPSGVDNSVSTW 210
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 194
Score = 41.0 bits (95), Expect = 7e-05
Identities = 16/72 (22%), Positives = 25/72 (34%)
Query: 9 ITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG 68
+ F L + GL SS + V AL+A + + V + + +LT G
Sbjct: 84 LRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRG 143
Query: 69 TQSGGMDQAISI 80
D A
Sbjct: 144 DNGSMGDLACIA 155
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 133
Score = 30.1 bits (67), Expect = 0.18
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 279 CPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK---EQFYQSRIDR 335
P ++ ++ G ++G+ G ++A KE + L+ E ++ + +
Sbjct: 72 IPNYFKIKEEVKD-KVYGITISGS--GPSIIAFPKEEFIDEVENILRDYYENTIRTEVGK 128
Query: 336 GV 337
GV
Sbjct: 129 GV 130
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 27.6 bits (60), Expect = 1.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 252 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNG 293
EE K + L DL + + +V++ + ++EEL RN+
Sbjct: 10 EEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK 51
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 27.7 bits (61), Expect = 2.3
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 281 ELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 332
EL+ + ++ G G +V +++D+ FI+ +K +F +++
Sbjct: 44 ELKPISKEGHSSSLFGN-----IKGATIV----DALDTLFIMGMKTEFQEAK 86
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 26.9 bits (59), Expect = 2.8
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 17 HINS-LFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLT 60
HI S F +GL+SS A + A+ + + EI+++
Sbjct: 103 HIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIA 147
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 26.9 bits (59), Expect = 4.3
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 303 GWGGCVVALVKESIDSQFILNLKEQFYQSR-----IDRGVINNNDLGLYVF 348
GWG + + +D+ ++ + I+ + G VF
Sbjct: 47 GWGSSAI----DGLDTAILMGDADIVNTILQYVPQINFTTTAVANQGSSVF 93
>d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia
ensiformis), Concanavalin B [TaxId: 3823]}
Length = 283
Score = 26.7 bits (58), Expect = 4.4
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 3/91 (3%)
Query: 264 MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 323
+ C C LE + C+ G L G G +
Sbjct: 48 LELEGV-CGPSVGNPCSFLESQIKECQRMGVK-VFLALGGPKG-TYSACSADYAKDLAEY 104
Query: 324 LKEQFYQSRIDRGVINNNDLGLYVFASKPSS 354
L F R + + G++ KP
Sbjct: 105 LHTYFLSERREGPLGKVALDGIHFDIQKPVD 135
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 148
Score = 25.9 bits (56), Expect = 4.6
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 25 LGSGLSSSTAFVCSSTVALMAA 46
L + S + ++++AL A
Sbjct: 125 LQADAGSRLVSLMAASLALADA 146
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 144
Score = 26.0 bits (56), Expect = 5.2
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 25 LGSGLSSSTAFVCSSTVALMAAFGV 49
L + S TA + +++VAL+ A GV
Sbjct: 121 LQADAGSRTACLNAASVALVDA-GV 144
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 72
Score = 24.2 bits (53), Expect = 7.4
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 141 LAIKLGMKPQEAISKVKTL 159
LA ++G++ Q+AI++++ L
Sbjct: 27 LAFQMGLRTQDAINRIQDL 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.373
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,246,004
Number of extensions: 55004
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 27
Length of query: 361
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,226,816
Effective search space: 337374400
Effective search space used: 337374400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)