Query 018059
Match_columns 361
No_of_seqs 305 out of 1725
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 09:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jtn_A LIM domain-binding prot 99.9 2.1E-24 7.1E-29 193.5 13.6 124 156-291 57-180 (182)
2 2xqn_T Testin, TESS; metal-bin 99.9 1.1E-24 3.8E-29 183.6 9.7 121 158-291 2-124 (126)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 1.4E-24 4.7E-29 184.0 8.9 122 159-292 2-127 (131)
4 2rgt_A Fusion of LIM/homeobox 99.9 1.8E-24 6E-29 191.7 9.2 125 158-294 5-129 (169)
5 1rut_X Flinc4, fusion protein 99.9 8.2E-24 2.8E-28 190.6 6.6 125 158-294 4-132 (188)
6 1b8t_A Protein (CRP1); LIM dom 99.9 3.1E-22 1.1E-26 180.8 9.8 123 157-293 5-175 (192)
7 2cup_A Skeletal muscle LIM-pro 99.8 3.2E-21 1.1E-25 156.2 9.0 98 157-265 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.8 1.5E-19 5.2E-24 151.9 5.0 109 158-294 4-116 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.7 1E-17 3.5E-22 139.1 7.7 104 158-293 2-107 (114)
10 1iml_A CRIP, cysteine rich int 99.6 2.6E-16 9E-21 121.0 6.6 71 160-230 1-72 (76)
11 1a7i_A QCRP2 (LIM1); LIM domai 99.6 2.2E-16 7.5E-21 122.9 4.6 73 157-229 5-77 (81)
12 2dlo_A Thyroid receptor-intera 99.6 9.9E-16 3.4E-20 119.2 7.8 78 146-224 2-80 (81)
13 2dar_A PDZ and LIM domain prot 99.6 1.4E-15 4.9E-20 120.8 7.9 68 156-224 22-89 (90)
14 1x3h_A Leupaxin; paxillin fami 99.6 1.3E-15 4.5E-20 118.0 7.4 77 147-224 2-79 (80)
15 2ehe_A Four and A half LIM dom 99.6 7E-16 2.4E-20 120.2 5.6 78 147-224 2-81 (82)
16 2cuq_A Four and A half LIM dom 99.6 1.9E-15 6.5E-20 117.1 7.6 77 147-224 2-79 (80)
17 2dj7_A Actin-binding LIM prote 99.6 1.9E-15 6.4E-20 117.9 6.6 68 156-224 12-79 (80)
18 1x63_A Skeletal muscle LIM-pro 99.6 3.8E-15 1.3E-19 115.9 8.0 77 147-223 2-80 (82)
19 2cu8_A Cysteine-rich protein 2 99.6 2.6E-15 8.9E-20 115.4 6.9 68 157-224 7-75 (76)
20 2d8y_A Eplin protein; LIM doma 99.6 5E-15 1.7E-19 117.8 8.4 74 157-230 13-86 (91)
21 1x68_A FHL5 protein; four-and- 99.6 1.9E-15 6.6E-20 116.2 5.3 69 158-226 4-75 (76)
22 2cur_A Skeletal muscle LIM-pro 99.6 3.3E-15 1.1E-19 112.6 6.4 66 158-224 4-69 (69)
23 2d8z_A Four and A half LIM dom 99.6 4.6E-15 1.6E-19 112.0 6.5 66 158-224 4-69 (70)
24 1wyh_A SLIM 2, skeletal muscle 99.5 4.5E-15 1.5E-19 112.6 6.1 67 158-224 4-71 (72)
25 1x4k_A Skeletal muscle LIM-pro 99.5 6.1E-15 2.1E-19 111.8 6.8 67 158-224 4-71 (72)
26 1g47_A Pinch protein; LIM doma 99.5 6E-15 2E-19 113.3 6.4 67 157-223 9-76 (77)
27 1x4l_A Skeletal muscle LIM-pro 99.5 8.1E-15 2.8E-19 111.3 6.2 67 157-223 3-72 (72)
28 1nyp_A Pinch protein; LIM doma 99.5 6.5E-15 2.2E-19 110.0 4.9 63 158-221 4-66 (66)
29 1x62_A C-terminal LIM domain p 99.5 1E-14 3.4E-19 113.1 5.5 66 157-223 13-78 (79)
30 1x64_A Alpha-actinin-2 associa 99.5 3.8E-14 1.3E-18 112.3 8.6 67 156-223 22-88 (89)
31 2d8x_A Protein pinch; LIM doma 99.5 2.6E-14 8.7E-19 108.0 6.5 66 157-223 3-68 (70)
32 1x6a_A LIMK-2, LIM domain kina 99.5 2.7E-14 9.3E-19 110.9 6.2 77 147-224 2-81 (81)
33 2cor_A Pinch protein; LIM doma 99.5 5.1E-14 1.7E-18 109.3 5.4 66 156-223 12-77 (79)
34 2egq_A FHL1 protein; LIM domai 99.5 1.1E-13 3.7E-18 106.3 7.1 70 147-216 2-76 (77)
35 1x61_A Thyroid receptor intera 99.4 8.4E-14 2.9E-18 105.6 6.0 67 158-225 4-71 (72)
36 1b8t_A Protein (CRP1); LIM dom 99.4 7E-14 2.4E-18 125.9 6.1 75 157-231 113-187 (192)
37 2co8_A NEDD9 interacting prote 99.4 1.4E-13 4.8E-18 107.5 5.8 67 156-222 12-80 (82)
38 1x6a_A LIMK-2, LIM domain kina 99.4 1.1E-13 3.7E-18 107.4 4.7 76 205-293 1-76 (81)
39 2l4z_A DNA endonuclease RBBP8, 99.4 3.9E-13 1.3E-17 113.2 7.7 64 156-219 58-123 (123)
40 2egq_A FHL1 protein; LIM domai 99.4 1.4E-13 5E-18 105.6 3.9 74 205-290 1-76 (77)
41 1wig_A KIAA1808 protein; LIM d 99.4 4E-13 1.4E-17 102.7 6.3 63 158-221 4-67 (73)
42 3f6q_B LIM and senescent cell 99.4 3.5E-13 1.2E-17 101.6 5.8 63 157-219 9-72 (72)
43 2cuq_A Four and A half LIM dom 99.4 3.4E-13 1.2E-17 104.2 4.8 73 205-292 1-73 (80)
44 2ehe_A Four and A half LIM dom 99.3 3.6E-13 1.2E-17 104.7 4.0 75 205-292 1-75 (82)
45 2l3k_A Rhombotin-2, linker, LI 99.3 5.9E-13 2E-17 111.7 4.9 73 160-232 9-83 (123)
46 1x3h_A Leupaxin; paxillin fami 99.3 8.4E-13 2.9E-17 102.0 5.4 74 205-293 1-74 (80)
47 2iyb_E Testin, TESS, TES; LIM 99.3 1.2E-12 4.2E-17 97.6 4.8 59 159-217 2-64 (65)
48 2dlo_A Thyroid receptor-intera 99.3 1.3E-12 4.5E-17 101.3 4.7 73 205-292 2-74 (81)
49 1v6g_A Actin binding LIM prote 99.3 2.2E-12 7.4E-17 100.1 5.8 72 147-219 2-75 (81)
50 1x63_A Skeletal muscle LIM-pro 99.3 1.6E-12 5.4E-17 100.9 4.3 76 205-293 1-76 (82)
51 1v6g_A Actin binding LIM prote 99.3 3.4E-12 1.1E-16 99.0 5.8 75 206-294 2-76 (81)
52 2xjy_A Rhombotin-2; oncoprotei 99.1 1.3E-11 4.5E-16 103.9 -0.5 75 146-220 50-129 (131)
53 1rut_X Flinc4, fusion protein 99.1 2.1E-11 7.1E-16 109.3 0.5 82 146-227 53-139 (188)
54 2xqn_T Testin, TESS; metal-bin 99.0 7E-11 2.4E-15 98.9 2.5 73 146-218 49-125 (126)
55 1wig_A KIAA1808 protein; LIM d 98.9 6.7E-10 2.3E-14 84.6 4.7 63 217-293 3-65 (73)
56 2rgt_A Fusion of LIM/homeobox 98.9 4.4E-10 1.5E-14 98.9 1.6 78 146-223 51-132 (169)
57 2jtn_A LIM domain-binding prot 98.8 1.3E-09 4.3E-14 97.1 3.1 72 146-217 105-180 (182)
58 2dar_A PDZ and LIM domain prot 98.8 3.4E-09 1.2E-13 83.7 5.2 70 208-292 14-83 (90)
59 1x68_A FHL5 protein; four-and- 98.8 2.1E-09 7.3E-14 82.1 3.9 71 216-300 2-73 (76)
60 2l3k_A Rhombotin-2, linker, LI 98.8 2.7E-09 9.4E-14 89.2 4.8 67 214-292 1-69 (123)
61 1x61_A Thyroid receptor intera 98.8 5.9E-09 2E-13 78.6 5.6 64 217-293 3-66 (72)
62 2cur_A Skeletal muscle LIM-pro 98.8 5.3E-09 1.8E-13 78.3 5.0 61 217-292 3-63 (69)
63 1nyp_A Pinch protein; LIM doma 98.8 2.4E-09 8.1E-14 79.5 2.7 62 216-292 2-63 (66)
64 2d8z_A Four and A half LIM dom 98.8 5.5E-09 1.9E-13 78.3 4.7 61 217-292 3-63 (70)
65 2iyb_E Testin, TESS, TES; LIM 98.8 3.6E-09 1.2E-13 78.6 3.4 61 218-291 1-64 (65)
66 1x4k_A Skeletal muscle LIM-pro 98.8 5.7E-09 2E-13 78.5 4.5 64 216-292 2-65 (72)
67 1x4l_A Skeletal muscle LIM-pro 98.8 6.9E-09 2.4E-13 78.3 4.9 64 217-292 3-67 (72)
68 3f6q_B LIM and senescent cell 98.7 4.1E-09 1.4E-13 79.0 3.1 66 214-292 6-71 (72)
69 1wyh_A SLIM 2, skeletal muscle 98.7 9E-09 3.1E-13 77.4 4.1 64 216-292 2-65 (72)
70 2d8x_A Protein pinch; LIM doma 98.7 1.7E-08 5.8E-13 75.7 5.2 61 218-293 4-64 (70)
71 2l4z_A DNA endonuclease RBBP8, 98.7 1.2E-08 4E-13 85.7 4.1 64 216-292 58-122 (123)
72 2cu8_A Cysteine-rich protein 2 98.6 2.3E-08 7.8E-13 76.3 4.6 62 217-292 7-69 (76)
73 2cor_A Pinch protein; LIM doma 98.6 3.6E-08 1.2E-12 76.1 4.2 60 217-292 13-72 (79)
74 1g47_A Pinch protein; LIM doma 98.6 2.9E-08 9.9E-13 75.6 3.6 63 217-292 9-71 (77)
75 1x62_A C-terminal LIM domain p 98.6 2.2E-08 7.4E-13 77.1 2.4 61 218-293 14-74 (79)
76 2co8_A NEDD9 interacting prote 98.5 6.1E-08 2.1E-12 75.3 4.9 62 219-293 15-77 (82)
77 1x64_A Alpha-actinin-2 associa 98.5 5.4E-08 1.9E-12 76.5 4.4 60 218-292 24-83 (89)
78 2dj7_A Actin-binding LIM prote 98.5 6.2E-08 2.1E-12 75.0 4.7 60 219-293 15-74 (80)
79 1m3v_A FLIN4, fusion of the LI 98.5 1.2E-08 4E-13 85.2 0.1 76 217-305 3-79 (122)
80 2d8y_A Eplin protein; LIM doma 98.5 6.3E-08 2.1E-12 76.5 3.7 63 217-293 13-75 (91)
81 1a7i_A QCRP2 (LIM1); LIM domai 98.5 5.5E-08 1.9E-12 75.0 3.3 61 218-292 6-66 (81)
82 1iml_A CRIP, cysteine rich int 98.5 9.5E-08 3.2E-12 72.8 4.4 60 220-293 1-61 (76)
83 2cup_A Skeletal muscle LIM-pro 98.5 6.4E-08 2.2E-12 77.5 3.3 71 217-302 3-73 (101)
84 1j2o_A FLIN2, fusion of rhombo 98.5 8.6E-08 2.9E-12 78.9 3.7 63 219-294 3-66 (114)
85 1zfo_A LAsp-1; LIM domain, zin 97.6 1.5E-05 5.1E-10 50.8 1.1 29 159-187 3-31 (31)
86 2d3g_P Ubiquitin interacting m 94.7 0.016 5.3E-07 34.8 1.9 23 40-62 2-24 (26)
87 1zfo_A LAsp-1; LIM domain, zin 87.2 0.17 5.9E-06 31.6 0.8 29 219-259 3-31 (31)
88 4ap4_A E3 ubiquitin ligase RNF 82.1 0.67 2.3E-05 37.3 2.4 98 187-299 8-117 (133)
89 2lva_A Ubiquitin carboxyl-term 80.1 0.41 1.4E-05 39.6 0.0 24 35-58 89-112 (129)
90 1q0v_A Hydrophilic protein; ha 77.3 0.93 3.2E-05 34.8 1.6 20 38-57 8-27 (81)
91 2djb_A Polycomb group ring fin 73.7 3.2 0.00011 30.0 3.8 46 187-232 16-63 (72)
92 1jm7_B BARD1, BRCA1-associated 73.0 3.1 0.00011 33.2 3.9 45 187-231 23-67 (117)
93 2ecy_A TNF receptor-associated 69.6 3.2 0.00011 29.4 2.9 45 187-232 16-63 (66)
94 1t1h_A Gspef-atpub14, armadill 69.4 5.2 0.00018 29.1 4.1 47 184-231 6-55 (78)
95 2ysl_A Tripartite motif-contai 68.4 3.9 0.00013 29.3 3.2 45 187-232 21-70 (73)
96 1q0v_A Hydrophilic protein; ha 65.7 4.8 0.00016 30.8 3.2 20 38-57 51-70 (81)
97 1weo_A Cellulose synthase, cat 64.8 11 0.00038 29.4 5.2 54 156-230 13-69 (93)
98 2y43_A E3 ubiquitin-protein li 64.8 4.1 0.00014 31.3 2.8 45 187-231 23-69 (99)
99 2ecv_A Tripartite motif-contai 63.9 6.4 0.00022 28.7 3.7 45 187-232 20-72 (85)
100 2ecm_A Ring finger and CHY zin 61.6 7.4 0.00025 26.1 3.4 27 205-231 27-55 (55)
101 2ecw_A Tripartite motif-contai 60.4 8.3 0.00028 28.1 3.8 45 187-232 20-72 (85)
102 2yur_A Retinoblastoma-binding 60.1 6.8 0.00023 28.4 3.2 44 187-231 16-64 (74)
103 1bor_A Transcription factor PM 58.7 7.8 0.00027 26.6 3.1 44 187-232 7-50 (56)
104 4ayc_A E3 ubiquitin-protein li 58.5 8.1 0.00028 31.7 3.7 26 206-231 72-99 (138)
105 2csy_A Zinc finger protein 183 57.9 6.9 0.00023 28.8 2.9 43 187-230 16-60 (81)
106 2ckl_A Polycomb group ring fin 57.7 6.7 0.00023 30.6 3.0 46 186-231 15-62 (108)
107 1jm7_A BRCA1, breast cancer ty 57.6 6.9 0.00023 30.4 3.0 43 188-231 23-70 (112)
108 1chc_A Equine herpes virus-1 r 57.4 11 0.00038 26.4 3.9 44 188-231 7-52 (68)
109 2ckl_B Ubiquitin ligase protei 57.0 6.2 0.00021 33.3 2.8 45 187-231 55-102 (165)
110 3vk6_A E3 ubiquitin-protein li 56.8 7.3 0.00025 31.1 2.9 44 188-231 3-49 (101)
111 2ecn_A Ring finger protein 141 56.4 5.3 0.00018 28.4 2.0 44 187-232 16-61 (70)
112 2d8t_A Dactylidin, ring finger 56.1 10 0.00034 27.1 3.5 28 204-231 32-61 (71)
113 3l11_A E3 ubiquitin-protein li 56.0 6.8 0.00023 30.9 2.8 43 187-230 16-61 (115)
114 3lrq_A E3 ubiquitin-protein li 52.9 7.1 0.00024 30.2 2.3 46 187-232 23-71 (100)
115 2egp_A Tripartite motif-contai 52.7 6.2 0.00021 28.6 1.9 27 205-231 30-65 (79)
116 2kre_A Ubiquitin conjugation f 51.2 15 0.00052 28.6 4.0 48 184-232 27-76 (100)
117 3fl2_A E3 ubiquitin-protein li 51.2 9.5 0.00032 30.5 2.9 27 205-231 70-99 (124)
118 2ct2_A Tripartite motif protei 51.1 9.8 0.00033 28.1 2.8 29 204-232 36-69 (88)
119 2ct0_A Non-SMC element 1 homol 50.9 11 0.00038 28.1 3.0 50 156-232 12-65 (74)
120 1e4u_A Transcriptional repress 50.8 12 0.0004 28.0 3.1 46 187-232 12-63 (78)
121 1g25_A CDK-activating kinase a 49.6 10 0.00035 26.5 2.6 46 187-232 4-56 (65)
122 4ic3_A E3 ubiquitin-protein li 49.4 16 0.00054 26.5 3.7 41 188-231 26-67 (74)
123 3ztg_A E3 ubiquitin-protein li 48.7 7.4 0.00025 29.3 1.8 44 186-230 13-61 (92)
124 2ysm_A Myeloid/lymphoid or mix 48.6 63 0.0022 25.2 7.5 96 159-290 7-104 (111)
125 2kr4_A Ubiquitin conjugation f 47.8 17 0.00057 27.3 3.7 47 184-231 12-60 (85)
126 1wgm_A Ubiquitin conjugation f 47.0 18 0.00061 28.1 3.8 47 184-231 20-69 (98)
127 2c2l_A CHIP, carboxy terminus 46.4 14 0.00048 33.1 3.6 46 186-232 208-256 (281)
128 2jrp_A Putative cytoplasmic pr 45.8 7.1 0.00024 29.9 1.2 12 221-232 53-64 (81)
129 1rmd_A RAG1; V(D)J recombinati 45.3 16 0.00053 28.7 3.3 45 187-232 24-71 (116)
130 4ap4_A E3 ubiquitin ligase RNF 45.0 15 0.00051 29.0 3.2 71 159-232 48-126 (133)
131 1z6u_A NP95-like ring finger p 43.9 13 0.00046 31.1 2.8 27 206-232 97-126 (150)
132 3hcs_A TNF receptor-associated 43.5 16 0.00055 30.7 3.3 45 187-232 19-66 (170)
133 2ea6_A Ring finger protein 4; 43.1 9.3 0.00032 26.7 1.5 27 204-230 39-67 (69)
134 3hct_A TNF receptor-associated 42.3 16 0.00053 29.0 2.9 45 187-232 19-66 (118)
135 2ect_A Ring finger protein 126 42.1 22 0.00076 25.6 3.5 25 208-232 39-65 (78)
136 3nw0_A Non-structural maintena 41.3 9.6 0.00033 34.7 1.6 48 158-232 179-230 (238)
137 2xeu_A Ring finger protein 4; 41.2 11 0.00037 25.9 1.6 46 187-232 4-57 (64)
138 1jjd_A Metallothionein, SMTA; 40.3 17 0.0006 25.7 2.4 29 188-216 9-38 (55)
139 2ecg_A Baculoviral IAP repeat- 39.6 23 0.0008 25.6 3.3 41 188-231 27-68 (75)
140 2ecj_A Tripartite motif-contai 37.0 26 0.00089 23.4 3.0 13 205-217 33-45 (58)
141 3knv_A TNF receptor-associated 35.2 8.8 0.0003 31.9 0.3 43 187-230 32-77 (141)
142 1chc_A Equine herpes virus-1 r 34.6 29 0.001 24.1 3.0 40 159-198 5-52 (68)
143 3ng2_A RNF4, snurf, ring finge 33.8 15 0.0005 25.9 1.3 29 204-232 34-64 (71)
144 2f42_A STIP1 homology and U-bo 33.5 26 0.00089 30.5 3.1 47 185-232 105-154 (179)
145 2gvi_A Conserved hypothetical 32.9 12 0.00042 33.2 0.8 13 204-216 190-202 (204)
146 2cs3_A Protein C14ORF4, MY039 32.4 30 0.001 26.5 2.8 33 158-190 14-46 (93)
147 2ysj_A Tripartite motif-contai 31.9 20 0.00069 24.7 1.7 31 187-218 21-51 (63)
148 4gne_A Histone-lysine N-methyl 30.4 1.7E+02 0.0058 23.1 7.2 50 159-229 15-68 (107)
149 2ect_A Ring finger protein 126 28.4 53 0.0018 23.4 3.6 40 259-298 16-55 (78)
150 2klz_A Ataxin-3; UIM, ubiquiti 26.0 28 0.00097 24.0 1.5 10 44-53 29-38 (52)
151 2yu4_A E3 SUMO-protein ligase 25.8 32 0.0011 26.1 2.0 43 185-228 6-59 (94)
152 2zet_C Melanophilin; complex, 25.2 38 0.0013 28.7 2.6 16 95-110 34-49 (153)
153 3py7_A Maltose-binding peripla 25.1 9.6 0.00033 38.0 -1.5 16 159-174 400-415 (523)
154 2dmi_A Teashirt homolog 3; zin 25.0 19 0.00065 27.4 0.6 12 257-268 79-90 (115)
155 1iym_A EL5; ring-H2 finger, ub 25.0 79 0.0027 20.7 3.8 40 259-298 6-46 (55)
156 2yho_A E3 ubiquitin-protein li 24.7 47 0.0016 24.4 2.7 41 188-231 20-61 (79)
157 2dmj_A Poly (ADP-ribose) polym 24.3 21 0.0007 28.4 0.6 19 214-232 20-38 (106)
158 2ee8_A Protein ODD-skipped-rel 24.2 17 0.00056 27.2 0.1 10 160-169 18-27 (106)
159 2hf1_A Tetraacyldisaccharide-1 23.7 12 0.00042 27.5 -0.7 41 259-327 9-49 (68)
160 2ea5_A Cell growth regulator w 23.4 57 0.002 23.2 2.9 25 205-231 33-58 (68)
161 2jny_A Uncharacterized BCR; st 23.4 10 0.00036 27.8 -1.2 42 258-327 10-51 (67)
162 3htk_C E3 SUMO-protein ligase 22.7 43 0.0015 31.2 2.5 47 185-231 180-232 (267)
163 2d8v_A Zinc finger FYVE domain 22.5 33 0.0011 25.2 1.4 14 205-218 26-39 (67)
164 4ayc_A E3 ubiquitin-protein li 22.4 1.6E+02 0.0056 23.5 5.9 38 161-199 55-100 (138)
165 2jr6_A UPF0434 protein NMA0874 22.4 15 0.0005 27.1 -0.6 43 257-327 7-49 (68)
166 3t6p_A Baculoviral IAP repeat- 22.3 60 0.002 31.1 3.6 42 187-231 296-338 (345)
167 1v9x_A Poly (ADP-ribose) polym 21.9 32 0.0011 27.8 1.4 18 156-173 17-34 (114)
168 2gvi_A Conserved hypothetical 21.9 19 0.00064 32.0 -0.1 31 258-290 172-202 (204)
169 2eqg_A Tumor necrosis factor, 21.5 51 0.0017 22.2 2.0 17 201-217 22-38 (49)
170 2bay_A PRE-mRNA splicing facto 21.1 61 0.0021 22.7 2.6 46 186-232 3-51 (61)
171 2y1n_A E3 ubiquitin-protein li 21.0 73 0.0025 31.1 3.9 45 187-232 333-380 (389)
172 3oue_A Cytochrome C family pro 20.4 11 0.00036 32.4 -1.9 46 255-301 102-155 (158)
No 1
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.91 E-value=2.1e-24 Score=193.48 Aligned_cols=124 Identities=23% Similarity=0.561 Sum_probs=109.1
Q ss_pred CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCccccCCcc
Q 018059 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 235 (361)
Q Consensus 156 ~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~ 235 (361)
....++|++|+++|....++.++|+.||+.||+|..|+++|....| .++|++||+.||.++|+|+|.+|+++|.+.. .
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~ 134 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-V 134 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-C
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-e
Confidence 4467899999999987677899999999999999999999988765 6899999999999999999999999999753 3
Q ss_pred ceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhh
Q 018059 236 LIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (361)
Q Consensus 236 ~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~ 291 (361)
++.+.++. | |..||+|..|++.|..|..|+...+|++||..||.++
T Consensus 135 v~~a~~~~-~---------H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 135 VRRAQDFV-Y---------HLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CCEETTEE-C---------CTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred EEecCCCC-E---------EeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 45566665 3 9999999999999977888887788999999999875
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=183.61 Aligned_cols=121 Identities=23% Similarity=0.530 Sum_probs=107.9
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCccccCCccce
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 237 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~~i 237 (361)
..++|++|+++|..++++.++|+.||+.||+|..|+++|.+..|+.++|++||+.||.++|+++|.+|+++|.+.+ ..|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~ 80 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV-QRV 80 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTS-CEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCc-eEE
Confidence 4578999999998788999999999999999999999999888999999999999999999999999999999742 468
Q ss_pred EeeccccccccCCCCccc--CCCCccCCCCCcCCCCCceEEccCCCccChhhhhhh
Q 018059 238 EYRAHPFWLQKYCPSHER--DGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (361)
Q Consensus 238 ~~~~~pfW~~~yCp~h~H--~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~ 291 (361)
.+.++. | | ..||+|..|++.|. |..|+. .+|++||..++.++
T Consensus 81 ~a~~~~-~---------H~~~~CF~C~~C~~~l~-~~~f~~-~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 81 TYNNFS-W---------HASTECFLCSCCSKCLI-GQKFMP-VEGMVFCSVECKKR 124 (126)
T ss_dssp EETTEE-E---------ESSTTTSBCTTTCCBCT-TSEEEE-ETTEEESSHHHHHS
T ss_pred ECCCCE-e---------eCCCCCcCcCCCCCccC-CCeeEe-ECCEEcchHHhhhh
Confidence 888887 3 7 99999999999995 788876 57999999666553
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.91 E-value=1.4e-24 Score=184.04 Aligned_cols=122 Identities=17% Similarity=0.457 Sum_probs=108.0
Q ss_pred CCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCC--cceeecCCcccchhhhhhhcCC--ccccCCCccccCCc
Q 018059 159 YRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNSA 234 (361)
Q Consensus 159 ~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~--~~f~~~dg~~YC~~CY~~~f~p--kC~~C~~~I~~~~~ 234 (361)
.++|++|+++|.....+.++|+.||+.||+|..|+.+|.. ..|+.++|++||+.||.++|++ +|.+|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e- 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE- 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-
Confidence 4689999999986667999999999999999999999963 5799999999999999999999 9999999998742
Q ss_pred cceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 235 GLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 235 ~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
.+|.+.++.| |..||+|..|++.|+.|..|+. .+|++||..||..++
T Consensus 81 ~~~~a~~~~~----------H~~CF~C~~C~~~L~~g~~f~~-~~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 81 MTMRVKDKVY----------HLECFKCAACQKHFCVGDRYLL-INSDIVCEQDIYEWT 127 (131)
T ss_dssp EEEEETTEEE----------EGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGHHHHH
T ss_pred eeEeeCCceE----------CccCcccCCCCCCCCCCCEEEE-ECCEEEcHHHHHHHh
Confidence 4677788763 9999999999999977888887 479999999998753
No 4
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.90 E-value=1.8e-24 Score=191.73 Aligned_cols=125 Identities=23% Similarity=0.553 Sum_probs=108.6
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCccccCCccce
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 237 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~~i 237 (361)
+.++|++|+++|....++.++|+.||+.||+|..|+.+|.+..| .++|++||+.||.++|+++|.+|+++|.+.. .++
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v~ 82 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VVR 82 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCc-EEE
Confidence 46799999999986678899999999999999999999988765 7899999999999999999999999999752 234
Q ss_pred EeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhccC
Q 018059 238 EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD 294 (361)
Q Consensus 238 ~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~d 294 (361)
.+.++. | |..||+|..|++.|..|+.|+...+|++||..||..+++.
T Consensus 83 ~a~~~~-~---------H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 83 RAQDFV-Y---------HLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp EETTEE-E---------EGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred EcCCce-E---------eeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc
Confidence 566665 3 9999999999999977888877778999999999987654
No 5
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.89 E-value=8.2e-24 Score=190.62 Aligned_cols=125 Identities=19% Similarity=0.491 Sum_probs=109.7
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCC--cceeecCCcccchhhhhhhcCC--ccccCCCccccCC
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNS 233 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~--~~f~~~dg~~YC~~CY~~~f~p--kC~~C~~~I~~~~ 233 (361)
..++|++|+++|....++.++++.||+.||+|..|+.+|.. ..|+.++|++||+.||.++|++ +|.+|+++|.+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 45789999999986667899999999999999999999985 6799999999999999999999 7999999999742
Q ss_pred ccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhccC
Q 018059 234 AGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD 294 (361)
Q Consensus 234 ~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~d 294 (361)
.+|.+.++. | |..||+|..|++.|..|..|+. .++++||..||..++..
T Consensus 84 -~~i~a~~~~-~---------H~~CF~C~~C~~~L~~g~~f~~-~~g~~yC~~c~~~~~~~ 132 (188)
T 1rut_X 84 -LVMRAQGNV-Y---------HLKCFTCSTCRNRLVPGDRFHY-INGSLFCEHDRPTALIN 132 (188)
T ss_dssp -EEEEETTEE-E---------CGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGCCTTTC-
T ss_pred -EEEEcCCCE-E---------eCCCCeECCCCCCCCCCCeEEE-ECCeEECHHHHHHHhcc
Confidence 356777876 3 9999999999999977888886 57999999999887654
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.87 E-value=3.1e-22 Score=180.75 Aligned_cols=123 Identities=22% Similarity=0.553 Sum_probs=107.0
Q ss_pred CCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCc---------------
Q 018059 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK--------------- 221 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pk--------------- 221 (361)
.+.++|.+|+++|+.++.+.++|+.||+.||+|..|+.+|....|+.++|++||+.||.++|+|+
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 35689999999998888899999999999999999999999988999999999999999999987
Q ss_pred ---------------------------------cccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcC
Q 018059 222 ---------------------------------CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERME 268 (361)
Q Consensus 222 ---------------------------------C~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l 268 (361)
|..|+++|.... .|.+.++. | |..||+|..|++.|
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~v~a~~~~-~---------H~~CF~C~~C~~~L 152 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE--KVIGAGKS-W---------HKSCFRCAKCGKSL 152 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS--CEEETTEE-E---------CTTTCBCTTTCCBC
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE--EEecCCCc-c---------chhcCCccccCCCC
Confidence 678888887542 56777775 4 99999999999999
Q ss_pred CCCCceEEccCCCccChhhhhhhcc
Q 018059 269 PRDTKYLSLDDGRKLCLECLDSAIM 293 (361)
Q Consensus 269 ~~g~~f~~~~dg~~~C~~C~~~~v~ 293 (361)
.. ..|+. .+|++||..||..++.
T Consensus 153 ~~-~~~~~-~~g~~yC~~cy~~~f~ 175 (192)
T 1b8t_A 153 ES-TTLAD-KDGEIYCKGCYAKNFG 175 (192)
T ss_dssp CS-SSEEE-ETTEEEEHHHHHHHTC
T ss_pred CC-Ccccc-cCCEEeCHHHHHHhcC
Confidence 54 46774 6899999999988653
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.84 E-value=3.2e-21 Score=156.16 Aligned_cols=98 Identities=27% Similarity=0.587 Sum_probs=88.4
Q ss_pred CCCCcCccCCCcccc-CceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCccccCCcc
Q 018059 157 SGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 235 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~-ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~ 235 (361)
.+.++|++|+++|+. ++.+.++++.||+.||+|..|+++|.+..|+.++|++||+.||.++|+|+|.+|+++|.+. +.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~-~~ 81 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAG-DQ 81 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSS-SC
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccC-Ce
Confidence 356899999999975 7889999999999999999999999888899999999999999999999999999999953 24
Q ss_pred ceEeeccccccccCCCCcccCCCCccCCCC
Q 018059 236 LIEYRAHPFWLQKYCPSHERDGTPRCCSCE 265 (361)
Q Consensus 236 ~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~ 265 (361)
.|.+.++.| |..||+|..|+
T Consensus 82 ~~~a~~~~~----------H~~CF~C~~C~ 101 (101)
T 2cup_A 82 NVEYKGTVW----------HKDCFSGPSSG 101 (101)
T ss_dssp EEESSSCEE----------ETTTCCCTTCC
T ss_pred EEEeCCcch----------HHhCCCCCCCC
Confidence 688888873 99999999996
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=1.5e-19 Score=151.90 Aligned_cols=109 Identities=16% Similarity=0.276 Sum_probs=91.4
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCC--cceeecCCcccchhhhhhhcCC--ccccCCCccccCC
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNS 233 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~--~~f~~~dg~~YC~~CY~~~f~p--kC~~C~~~I~~~~ 233 (361)
..++|++|+++|....++.++++.||+.||+|..|+.+|.. ..|+.++|++||+.||.++|+| +|.+|+++|.+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~- 82 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG- 82 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE-
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch-
Confidence 46789999999987677999999999999999999999973 5799999999999999999999 999999999974
Q ss_pred ccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhccC
Q 018059 234 AGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD 294 (361)
Q Consensus 234 ~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~d 294 (361)
.+++.++ .+..|++|++ .++++||..|+....+.
T Consensus 83 --~~~~~g~------------------------~~l~g~~f~~-~~~~~yC~~~~~~~~~~ 116 (122)
T 1m3v_A 83 --DVMVVGE------------------------PTLMGGEFGD-EDERLITRLENTQFDAA 116 (122)
T ss_dssp --ESSSSSS------------------------SSCCSCTTCC-TTCCCCEECTTTTTTCC
T ss_pred --heEEcCC------------------------cCCCCCccEe-cCCEeEccCcchhchhh
Confidence 2333222 1236889985 67999999999876543
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1e-17 Score=139.09 Aligned_cols=104 Identities=14% Similarity=0.339 Sum_probs=86.4
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCC--cceeecCCcccchhhhhhhcCCccccCCCccccCCcc
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 235 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~--~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~ 235 (361)
+.++|++|+++|...+++.++++.||+.||+|..|+.+|.. ..|+.++|++||+.||.++|+|+|..|.. +.
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~--- 75 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GD--- 75 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CS---
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---Cc---
Confidence 45789999999986678999999999999999999999985 57999999999999999999999998862 11
Q ss_pred ceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhcc
Q 018059 236 LIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 293 (361)
Q Consensus 236 ~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~ 293 (361)
+| . |.+.+..|++|++ .++++||..|+.....
T Consensus 76 ~~----------------------~---~~~~~~~g~~f~~-~~~~~~C~~~~~~~~~ 107 (114)
T 1j2o_A 76 VM----------------------V---VGEPTLMGGEFGD-EDERLITRLENTQFDA 107 (114)
T ss_dssp CC----------------------C---SSCSSTTSSBCCC-SSSCCCEEEECTTCCC
T ss_pred ee----------------------E---cCCccCCCCeeEE-cCCEeecchhhhcccc
Confidence 11 1 3355557889975 6799999999987543
No 10
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.6e-16 Score=120.98 Aligned_cols=71 Identities=21% Similarity=0.506 Sum_probs=66.7
Q ss_pred CcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccch-hhhhhhcCCccccCCCccc
Q 018059 160 RICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDVCQNFIP 230 (361)
Q Consensus 160 ~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~-~CY~~~f~pkC~~C~~~I~ 230 (361)
++|++|+++|..++.|.++++.||+.||+|..|+++|....|+.++|++||. .||.++|+|+|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5799999999878999999999999999999999999988899999999999 6999999999999997665
No 11
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.62 E-value=2.2e-16 Score=122.89 Aligned_cols=73 Identities=22% Similarity=0.470 Sum_probs=58.0
Q ss_pred CCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCcc
Q 018059 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI 229 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I 229 (361)
.+.++|.+|+++|+.++.+.++++.||+.||+|..|+++|....|+.+++++||+.||.++|+|+|..|++..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 4578999999999888899999999999999999999999988899999999999999999999999999764
No 12
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=9.9e-16 Score=119.17 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=70.7
Q ss_pred CCCccCCCCCCCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeec-CCcccchhhhhhhcCCcccc
Q 018059 146 SGNIFQPFPFFSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHHPKCDV 224 (361)
Q Consensus 146 ~gs~~~p~~~~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~-dg~~YC~~CY~~~f~pkC~~ 224 (361)
.|++|+...+....++|++|+++|. +++|.++++.||+.||+|..|+++|.+..|+.. +|++||+.||.++|+|+|.+
T Consensus 2 ~g~~yC~~~y~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 2 SSGSSGEGCYVATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCCCCCCCCCCSSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cCCEECHHHhhcCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 4778999888668899999999997 678999999999999999999999998788875 78999999999999999974
No 13
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1.4e-15 Score=120.76 Aligned_cols=68 Identities=26% Similarity=0.560 Sum_probs=63.4
Q ss_pred CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCcccc
Q 018059 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (361)
Q Consensus 156 ~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~ 224 (361)
....++|++|+++|. +++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|..
T Consensus 22 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 22 GKRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TTCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 557789999999994 88999999999999999999999999888999999999999999999999964
No 14
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1.3e-15 Score=117.97 Aligned_cols=77 Identities=27% Similarity=0.523 Sum_probs=70.3
Q ss_pred CCccCCCCC-CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCcccc
Q 018059 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (361)
Q Consensus 147 gs~~~p~~~-~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~ 224 (361)
|++|+...+ ....++|++|+++|. ++.|.++++.||+.||+|..|+++|....|+.+++++||+.||.++|+++|..
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCccchhHHhhhcCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 567888888 556789999999996 58899999999999999999999999888999999999999999999999974
No 15
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=7e-16 Score=120.19 Aligned_cols=78 Identities=23% Similarity=0.428 Sum_probs=71.1
Q ss_pred CCccCCCCC-CCCCCcCccCCCcccc-CceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCcccc
Q 018059 147 GNIFQPFPF-FSGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (361)
Q Consensus 147 gs~~~p~~~-~~~~~~C~~C~~~I~~-ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~ 224 (361)
|.+|+...+ ....++|++|+++|.. +.++.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|.+
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 678898888 6677899999999974 67888999999999999999999999888999999999999999999999974
No 16
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.9e-15 Score=117.06 Aligned_cols=77 Identities=19% Similarity=0.424 Sum_probs=70.4
Q ss_pred CCccCCCCC-CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCcccc
Q 018059 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (361)
Q Consensus 147 gs~~~p~~~-~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~ 224 (361)
|.+|+...+ ....++|++|+++|. ++.|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|..
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 678898888 567799999999996 56899999999999999999999998888999999999999999999999964
No 17
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.9e-15 Score=117.93 Aligned_cols=68 Identities=32% Similarity=0.738 Sum_probs=62.8
Q ss_pred CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCcccc
Q 018059 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (361)
Q Consensus 156 ~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~ 224 (361)
..+.++|++|+++|+.+++|.++++.||+.||+|..|+.+|.+ .|+.+++++||+.||.++|+++|..
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 3467899999999988899999999999999999999999986 6889999999999999999999974
No 18
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=3.8e-15 Score=115.86 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=70.3
Q ss_pred CCccCCCCC-CCCCCcCccCCCccccC-ceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccc
Q 018059 147 GNIFQPFPF-FSGYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (361)
Q Consensus 147 gs~~~p~~~-~~~~~~C~~C~~~I~~g-e~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~ 223 (361)
+++|+...+ ....++|++|+++|..+ .+|.++++.||+.||+|..|+++|....|+.+++++||+.||.++|+|+|.
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 568898888 66678999999999875 568999999999999999999999988999999999999999999999985
No 19
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2.6e-15 Score=115.37 Aligned_cols=68 Identities=18% Similarity=0.465 Sum_probs=63.5
Q ss_pred CCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccch-hhhhhhcCCcccc
Q 018059 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDV 224 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~-~CY~~~f~pkC~~ 224 (361)
...++|++|+++|..++.|.++++.||+.||+|..|+++|....|+.+++++||. .||.++|+|+|..
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 4568999999999878999999999999999999999999988899999999999 7999999999964
No 20
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=5e-15 Score=117.84 Aligned_cols=74 Identities=20% Similarity=0.394 Sum_probs=67.2
Q ss_pred CCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCccc
Q 018059 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIP 230 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~ 230 (361)
.+..+|.+|+++|..++.|.++++.||+.||+|..|+.+|....|+.+++++||..||.++|+|+|..+..+..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~ 86 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGS 86 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCC
Confidence 46789999999998778899999999999999999999999888999999999999999999999996665544
No 21
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.9e-15 Score=116.22 Aligned_cols=69 Identities=19% Similarity=0.566 Sum_probs=64.1
Q ss_pred CCCcCccCCCcccc---CceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCC
Q 018059 158 GYRICAGCNTEIGH---GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQ 226 (361)
Q Consensus 158 ~~~~C~~C~~~I~~---ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~ 226 (361)
..++|++|+++|.. .++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+++|..++
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 45789999999973 4889999999999999999999999988899999999999999999999999876
No 22
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3.3e-15 Score=112.60 Aligned_cols=66 Identities=24% Similarity=0.576 Sum_probs=61.7
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCcccc
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~ 224 (361)
+.++|++|+++|. ++.|.++++.||+.||+|..|+++|.+..|+.+++++||..||.++|+|+|.+
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 4 GSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 5679999999996 67899999999999999999999999888999999999999999999999974
No 23
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4.6e-15 Score=112.00 Aligned_cols=66 Identities=23% Similarity=0.531 Sum_probs=61.4
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCcccc
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~ 224 (361)
+.++|.+|+++|. ++.|.++++.||+.||+|..|+++|.+..|+.+++++||..||.++|+|+|..
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 5678999999996 67799999999999999999999999888999999999999999999999964
No 24
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4.5e-15 Score=112.55 Aligned_cols=67 Identities=25% Similarity=0.595 Sum_probs=62.3
Q ss_pred CCCcCccCCCccccC-ceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCcccc
Q 018059 158 GYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (361)
Q Consensus 158 ~~~~C~~C~~~I~~g-e~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~ 224 (361)
...+|.+|+++|..+ .++.++++.||+.||+|..|+++|....|+.+++++||+.||.++|+|+|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 467899999999875 8899999999999999999999999888999999999999999999999963
No 25
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=6.1e-15 Score=111.81 Aligned_cols=67 Identities=31% Similarity=0.678 Sum_probs=62.2
Q ss_pred CCCcCccCCCccccC-ceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCcccc
Q 018059 158 GYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (361)
Q Consensus 158 ~~~~C~~C~~~I~~g-e~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~ 224 (361)
..++|++|+++|..+ .+|.++++.||+.||+|..|+++|....|+..++++||+.||.++|+|+|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 457899999999875 6899999999999999999999999988999999999999999999999974
No 26
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=6e-15 Score=113.30 Aligned_cols=67 Identities=18% Similarity=0.395 Sum_probs=60.1
Q ss_pred CCCCcCccCCCcccc-CceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccc
Q 018059 157 SGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~-ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~ 223 (361)
....+|++|+++|.. +.++.++|+.||+.||+|..|+++|....|+.++|++||+.||.++|+|+|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 356899999999985 4667899999999999999999999988899999999999999999999996
No 27
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=8.1e-15 Score=111.35 Aligned_cols=67 Identities=31% Similarity=0.690 Sum_probs=61.2
Q ss_pred CCCCcCccCCCcccc---CceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccc
Q 018059 157 SGYRICAGCNTEIGH---GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~---ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~ 223 (361)
.+..+|++|+++|.. ..+|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|++.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~g 72 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSSG 72 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCCC
Confidence 356899999999974 3889999999999999999999999988899999999999999999999873
No 28
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.52 E-value=6.5e-15 Score=110.04 Aligned_cols=63 Identities=27% Similarity=0.561 Sum_probs=59.4
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCc
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK 221 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pk 221 (361)
..++|++|+++|. ++++.++++.||+.||+|..|+++|.+..|+.++|++||+.||.++|+||
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 4678999999997 88999999999999999999999999888999999999999999999986
No 29
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1e-14 Score=113.08 Aligned_cols=66 Identities=20% Similarity=0.482 Sum_probs=61.0
Q ss_pred CCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccc
Q 018059 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~ 223 (361)
....+|++|+++|. +++|.++++.||+.||+|..|+++|....|+.+++++||+.||.++|+|++.
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 45789999999996 5789999999999999999999999887899999999999999999999875
No 30
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=3.8e-14 Score=112.26 Aligned_cols=67 Identities=21% Similarity=0.521 Sum_probs=61.9
Q ss_pred CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccc
Q 018059 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (361)
Q Consensus 156 ~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~ 223 (361)
.....+|.+|+++|. +++|.++++.||+.||+|..|+++|....|+.+++++||+.||.++|+|+|.
T Consensus 22 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 22 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 346689999999997 5889999999999999999999999988899999999999999999999985
No 31
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=2.6e-14 Score=107.98 Aligned_cols=66 Identities=32% Similarity=0.689 Sum_probs=60.9
Q ss_pred CCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccc
Q 018059 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~ 223 (361)
.+..+|++|+++|. +++|.++++.||+.||+|..|+.+|....|+.+++++||+.||.++|+++..
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 35689999999996 7889999999999999999999999998899999999999999999998764
No 32
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=2.7e-14 Score=110.85 Aligned_cols=77 Identities=23% Similarity=0.430 Sum_probs=68.1
Q ss_pred CCccCCCCC-CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCC-ccee-ecCCcccchhhhhhhcCCccc
Q 018059 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD-VEFS-MSGNRPYHKHCYKEQHHPKCD 223 (361)
Q Consensus 147 gs~~~p~~~-~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~-~~f~-~~dg~~YC~~CY~~~f~pkC~ 223 (361)
+++|+..++ ....++|++|+++|. ++.|.++++.||+.||+|..|+++|.. ..|. ..++++||+.||.++|++.|.
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCccchhHHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 567888888 667789999999997 888999999999999999999999974 5676 489999999999999999886
Q ss_pred c
Q 018059 224 V 224 (361)
Q Consensus 224 ~ 224 (361)
+
T Consensus 81 g 81 (81)
T 1x6a_A 81 G 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=5.1e-14 Score=109.33 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=59.8
Q ss_pred CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccc
Q 018059 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (361)
Q Consensus 156 ~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~ 223 (361)
..+.++|++|+++|. +++|.++++.||+.||+|..|+.+|....| .++|++||..||.++|+|++.
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCSSC
T ss_pred ccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCCCC
Confidence 346789999999997 888999999999999999999999998754 889999999999999999775
No 34
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=106.35 Aligned_cols=70 Identities=21% Similarity=0.487 Sum_probs=63.1
Q ss_pred CCccCCCCC-CCCCCcCccCCCcccc----CceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhh
Q 018059 147 GNIFQPFPF-FSGYRICAGCNTEIGH----GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE 216 (361)
Q Consensus 147 gs~~~p~~~-~~~~~~C~~C~~~I~~----ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~ 216 (361)
+++|+...+ ....++|++|+++|.. .+.+.++++.||+.||+|..|+++|.+..|+.+++++||+.||.+
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 567888888 6677999999999973 388999999999999999999999998889999999999999975
No 35
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=8.4e-14 Score=105.59 Aligned_cols=67 Identities=21% Similarity=0.540 Sum_probs=59.6
Q ss_pred CCCcCccCCCccccC-ceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccC
Q 018059 158 GYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVC 225 (361)
Q Consensus 158 ~~~~C~~C~~~I~~g-e~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C 225 (361)
+.++|.+|+++|... ..+.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|. +|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~~~ 71 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCSSC
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCCCC
Confidence 567999999999764 68999999999999999999999988889999999999999999885 55543
No 36
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.44 E-value=7e-14 Score=125.89 Aligned_cols=75 Identities=21% Similarity=0.443 Sum_probs=69.6
Q ss_pred CCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCcccc
Q 018059 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPT 231 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~ 231 (361)
.+..+|++|+++|..++.|.++++.||+.||+|..|+++|....|+.+++++||+.||.++|+++|.+|+++|-.
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g~ 187 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGA 187 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcccc
Confidence 456789999999987888999999999999999999999988889999999999999999999999999998643
No 37
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=1.4e-13 Score=107.55 Aligned_cols=67 Identities=19% Similarity=0.390 Sum_probs=60.2
Q ss_pred CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCccee--ecCCcccchhhhhhhcCCcc
Q 018059 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKEQHHPKC 222 (361)
Q Consensus 156 ~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~--~~dg~~YC~~CY~~~f~pkC 222 (361)
..+..+|.+|+++|+.++.|.++++.||+.||+|..|+++|....|+ ..+|++||+.||.++|++-+
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 44678999999999888899999999999999999999999988887 47999999999999988654
No 38
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1.1e-13 Score=107.43 Aligned_cols=76 Identities=13% Similarity=0.294 Sum_probs=65.7
Q ss_pred CCcccchhhhhhhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccC
Q 018059 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (361)
Q Consensus 205 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C 284 (361)
++.+||+.||.++|+++|..|+++|.+. .|.+.++. | |..||+|..|++.|..|..|+...++.+||
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~~-~---------H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C 67 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEFK-Y---------HPECFACMSCKVIIEDGDAYALVQHATLYC 67 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTCC-B---------CTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCce-e---------ccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence 4679999999999999999999999953 67777776 4 999999999999997778887547899999
Q ss_pred hhhhhhhcc
Q 018059 285 LECLDSAIM 293 (361)
Q Consensus 285 ~~C~~~~v~ 293 (361)
..||..++.
T Consensus 68 ~~c~~~~~~ 76 (81)
T 1x6a_A 68 GKCHNEVVS 76 (81)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999987654
No 39
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=113.19 Aligned_cols=64 Identities=22% Similarity=0.541 Sum_probs=57.7
Q ss_pred CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCC--CcceeecCCcccchhhhhhhcC
Q 018059 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKEQHH 219 (361)
Q Consensus 156 ~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~--~~~f~~~dg~~YC~~CY~~~f~ 219 (361)
....++|++|+++|+...++.++++.||+.||+|..|+.+|. +..|+.++|++||+.||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 446789999999998667799999999999999999999997 3579999999999999999885
No 40
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=105.60 Aligned_cols=74 Identities=22% Similarity=0.538 Sum_probs=62.2
Q ss_pred CCcccchhhhhhhcCCccccCCCccccC--CccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCc
Q 018059 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTN--SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRK 282 (361)
Q Consensus 205 dg~~YC~~CY~~~f~pkC~~C~~~I~~~--~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~ 282 (361)
+++|||+.||.++|+++|.+|+++|.+. .+..|.+.++. | |..||+|..|++.|. +..|+. .+|++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~-~---------H~~CF~C~~C~~~L~-~~~f~~-~~~~~ 68 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQS-W---------HDYCFHCKKCSVNLA-NKRFVF-HQEQV 68 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEE-E---------ETTTCBCSSSCCBCT-TSCCCE-ETTEE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcce-e---------CcccCEehhcCCCCC-CCccEe-ECCEE
Confidence 4789999999999999999999999961 12467777776 4 999999999999994 666765 57999
Q ss_pred cChhhhhh
Q 018059 283 LCLECLDS 290 (361)
Q Consensus 283 ~C~~C~~~ 290 (361)
||..||..
T Consensus 69 yC~~cy~~ 76 (77)
T 2egq_A 69 YCPDCAKK 76 (77)
T ss_dssp CCHHHHHH
T ss_pred EChHHhcc
Confidence 99999975
No 41
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=4e-13 Score=102.69 Aligned_cols=63 Identities=27% Similarity=0.591 Sum_probs=57.0
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCC-CcceeecCCcccchhhhhhhcCCc
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHPK 221 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~-~~~f~~~dg~~YC~~CY~~~f~pk 221 (361)
..++|++|+++|. +++|.++++.||+.||+|..|+++|. +..|+..++++||..||.+++...
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 4678999999996 58899999999999999999999998 667889999999999999887754
No 42
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.39 E-value=3.5e-13 Score=101.57 Aligned_cols=63 Identities=19% Similarity=0.438 Sum_probs=56.9
Q ss_pred CCCCcCccCCCccccCc-eEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcC
Q 018059 157 SGYRICAGCNTEIGHGR-YLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH 219 (361)
Q Consensus 157 ~~~~~C~~C~~~I~~ge-~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~ 219 (361)
....+|++|+++|..++ ++.++++.||+.||+|..|+++|....|+.++|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 35679999999998665 4679999999999999999999998889999999999999999875
No 43
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=3.4e-13 Score=104.24 Aligned_cols=73 Identities=22% Similarity=0.643 Sum_probs=63.6
Q ss_pred CCcccchhhhhhhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccC
Q 018059 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (361)
Q Consensus 205 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C 284 (361)
+|++||+.||.++|+++|..|+++|.+. .|.+.++. | |..||+|..|++.| .+..|+. .++++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~~-~---------H~~CF~C~~C~~~L-~~~~~~~-~~~~~yC 65 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQP-W---------HRECLVCTGCQTPL-AGQQFTS-RDEDPYC 65 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSSE-E---------CTTTCBCSSSCCBC-TTCCEEE-CSSSEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCch-h---------hhhhCCcccCCCcC-CCCeeEe-ECCEEEC
Confidence 5889999999999999999999999864 57777775 4 99999999999999 4667875 6899999
Q ss_pred hhhhhhhc
Q 018059 285 LECLDSAI 292 (361)
Q Consensus 285 ~~C~~~~v 292 (361)
..||..++
T Consensus 66 ~~cy~~~f 73 (80)
T 2cuq_A 66 VACFGELF 73 (80)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998764
No 44
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.6e-13 Score=104.68 Aligned_cols=75 Identities=28% Similarity=0.651 Sum_probs=62.9
Q ss_pred CCcccchhhhhhhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccC
Q 018059 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (361)
Q Consensus 205 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C 284 (361)
+|+|||+.||.++|+++|..|+++|.+. ..++.+.++. | |..||+|..|++.|. +..|+. .++++||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~-~~~~~a~~~~-~---------H~~CF~C~~C~~~L~-~~~f~~-~~~~~~C 67 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHD-SRELFYEDRH-F---------HEGCFRCCRCQRSLA-DEPFTC-QDSELLC 67 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS-CCBCCCSSCC-C---------BTTTSBCTTTCCBCS-SCCEEE-ETTEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccC-cEEEEeCCcc-c---------cccCCeecCCCCccC-CCccEe-eCCEEEC
Confidence 5889999999999999999999999942 2356666765 4 999999999999994 667775 5799999
Q ss_pred hhhhhhhc
Q 018059 285 LECLDSAI 292 (361)
Q Consensus 285 ~~C~~~~v 292 (361)
..||..++
T Consensus 68 ~~c~~~~~ 75 (82)
T 2ehe_A 68 NDCYCSAF 75 (82)
T ss_dssp TTTSSCCG
T ss_pred HHHHhhhc
Confidence 99998754
No 45
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.34 E-value=5.9e-13 Score=111.68 Aligned_cols=73 Identities=15% Similarity=0.288 Sum_probs=65.5
Q ss_pred CcCccCCCccccC-ceEEeCCceecCCCcccCCCCCCCC-CcceeecCCcccchhhhhhhcCCccccCCCccccC
Q 018059 160 RICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN 232 (361)
Q Consensus 160 ~~C~~C~~~I~~g-e~l~a~gk~wH~~CF~C~~C~~~L~-~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~ 232 (361)
.+|++|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||..||.++|+++|..|...+.+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGG 83 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccC
Confidence 3899999999864 5678999999999999999999994 55799999999999999999999999999887754
No 46
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=8.4e-13 Score=102.03 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=63.5
Q ss_pred CCcccchhhhhhhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccC
Q 018059 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (361)
Q Consensus 205 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C 284 (361)
+|++||+.||.++|+++|..|+++|.+. .|.+.++. | |..||+|..|++.|..+ .|+. .++++||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~~-~---------H~~CF~C~~C~~~L~~~-~~~~-~~~~~yC 65 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDTV-W---------HPECFVCGDCFTSFSTG-SFFE-LDGRPFC 65 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTEE-E---------CTTTCBCSSSCCBSCSS-CCEE-SSSCEEC
T ss_pred CCCccchhHHhhhcCCccccCCCeecce---eEEECCCe-E---------ecCcCChhhCCCCCCCC-cEEe-ECCEEEC
Confidence 5789999999999999999999999973 67787776 4 99999999999999544 5775 5799999
Q ss_pred hhhhhhhcc
Q 018059 285 LECLDSAIM 293 (361)
Q Consensus 285 ~~C~~~~v~ 293 (361)
..||..++.
T Consensus 66 ~~~y~~~f~ 74 (80)
T 1x3h_A 66 ELHYHHRRG 74 (80)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 999987653
No 47
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=97.58 Aligned_cols=59 Identities=24% Similarity=0.562 Sum_probs=54.3
Q ss_pred CCcCccCCCcccc-CceEEeCCceec--CCCcccCCCCCCCCCcceeecCCcccc-hhhhhhh
Q 018059 159 YRICAGCNTEIGH-GRYLSCMEAFWH--PECFRCHSCNLPITDVEFSMSGNRPYH-KHCYKEQ 217 (361)
Q Consensus 159 ~~~C~~C~~~I~~-ge~l~a~gk~wH--~~CF~C~~C~~~L~~~~f~~~dg~~YC-~~CY~~~ 217 (361)
.++|++|+++|.. ++.|.++++.|| +.||+|..|+++|.+..|+.++|+||| ..||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4689999999987 489999999999 999999999999999889999999999 8999764
No 48
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=1.3e-12 Score=101.35 Aligned_cols=73 Identities=16% Similarity=0.366 Sum_probs=62.6
Q ss_pred CCcccchhhhhhhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccC
Q 018059 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (361)
Q Consensus 205 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C 284 (361)
+|++||+.||. ++.++|..|+++|.+. .|.+.++. | |..||+|..|++.| .+..|+...+|.+||
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~---~~~a~~~~-~---------H~~CF~C~~C~~~L-~~~~f~~~~~g~~yC 66 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR---ILRAMGKA-Y---------HPGCFTCVVCHRGL-DGIPFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC---CEEETTEE-E---------CTTTCBCSSSCCBC-TTSCEECCTTCCCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce---eEEECCcc-c---------cHHhcCcccCCCcc-CCCeeEECCCCEEEC
Confidence 68999999999 7999999999999953 67777776 4 99999999999999 477787544789999
Q ss_pred hhhhhhhc
Q 018059 285 LECLDSAI 292 (361)
Q Consensus 285 ~~C~~~~v 292 (361)
..||..++
T Consensus 67 ~~cy~~~f 74 (81)
T 2dlo_A 67 IEDFHRKF 74 (81)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998764
No 49
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=2.2e-12 Score=100.12 Aligned_cols=72 Identities=19% Similarity=0.370 Sum_probs=60.7
Q ss_pred CCccCCCCC-CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCC-cccchhhhhhhcC
Q 018059 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGN-RPYHKHCYKEQHH 219 (361)
Q Consensus 147 gs~~~p~~~-~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg-~~YC~~CY~~~f~ 219 (361)
+++|+..++ .....+|++|+++|. ++.|.++++.||+.||+|..|+++|....++..++ .+||..||.+++.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCCcchHHHHhHhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 467888888 667789999999997 78999999999999999999999998766555444 5799999976544
No 50
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=1.6e-12 Score=100.92 Aligned_cols=76 Identities=18% Similarity=0.539 Sum_probs=63.2
Q ss_pred CCcccchhhhhhhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccC
Q 018059 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (361)
Q Consensus 205 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C 284 (361)
++.+||+.||.++|+++|..|+++|...+ .+|.+.++. | |..||+|..|++.|..+ .|+. .++.+||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~~-~---------H~~CF~C~~C~~~L~~~-~~~~-~~~~~yC 67 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGTV-W---------HKDCFTCSNCKQVIGTG-SFFP-KGEDFYC 67 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSCE-E---------ETTTCCCSSSCCCCTTS-CEEE-ETTEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-eEEEECccc-c---------ccccCchhhCCCccCCC-ccEe-eCCEEEC
Confidence 46899999999999999999999999632 356777775 4 99999999999999544 6765 5799999
Q ss_pred hhhhhhhcc
Q 018059 285 LECLDSAIM 293 (361)
Q Consensus 285 ~~C~~~~v~ 293 (361)
..||..++.
T Consensus 68 ~~cy~~~f~ 76 (82)
T 1x63_A 68 VTCHETKFA 76 (82)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhC
Confidence 999987643
No 51
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=3.4e-12 Score=99.04 Aligned_cols=75 Identities=13% Similarity=0.311 Sum_probs=62.0
Q ss_pred CcccchhhhhhhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccCh
Q 018059 206 NRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL 285 (361)
Q Consensus 206 g~~YC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~ 285 (361)
+.+||+.||.++|+++|..|+++|.+. .|.+.++. | |..||+|..|++.|..+..|. +.++.+||.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~---~v~a~~~~-w---------H~~CF~C~~C~~~L~~~~~~~-~~~~~~~C~ 67 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGE---VVSALGKT-Y---------HPDCFVCAVCRLPFPPGDRVT-FNGKECMCQ 67 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSC---CEEETTEE-E---------CTTTSSCSSSCCCCCSSSCEE-EETTEEEEH
T ss_pred CCCcchHHHHhHhCCcCccccCEeccc---eEEECCce-e---------CccCCccccCCCCCCCCCEEE-eCCCCEECh
Confidence 568999999999999999999999953 68888876 4 999999999999996666655 444457999
Q ss_pred hhhhhhccC
Q 018059 286 ECLDSAIMD 294 (361)
Q Consensus 286 ~C~~~~v~d 294 (361)
.|+..++..
T Consensus 68 ~C~~~~~~~ 76 (81)
T 1v6g_A 68 KCSLPVSVS 76 (81)
T ss_dssp HHHSCCSSC
T ss_pred hhhcccCCC
Confidence 999876543
No 52
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.06 E-value=1.3e-11 Score=103.92 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=61.9
Q ss_pred CCCccCCCCC-CCCCC--cCccCCCccccC-ceEEeCCceecCCCcccCCCCCCCC-CcceeecCCcccchhhhhhhcCC
Q 018059 146 SGNIFQPFPF-FSGYR--ICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHP 220 (361)
Q Consensus 146 ~gs~~~p~~~-~~~~~--~C~~C~~~I~~g-e~l~a~gk~wH~~CF~C~~C~~~L~-~~~f~~~dg~~YC~~CY~~~f~p 220 (361)
.|.+|+...+ ....+ +|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||..||.++|++
T Consensus 50 ~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 50 LGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp TTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred CCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 4556666555 23334 899999999754 5788999999999999999999995 66799999999999999998865
No 53
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.05 E-value=2.1e-11 Score=109.35 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=61.9
Q ss_pred CCCccCCCCC-CCCCC--cCccCCCccccC-ceEEeCCceecCCCcccCCCCCCCC-CcceeecCCcccchhhhhhhcCC
Q 018059 146 SGNIFQPFPF-FSGYR--ICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHP 220 (361)
Q Consensus 146 ~gs~~~p~~~-~~~~~--~C~~C~~~I~~g-e~l~a~gk~wH~~CF~C~~C~~~L~-~~~f~~~dg~~YC~~CY~~~f~p 220 (361)
.|.+|+...+ ....+ +|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||..||.++|.+
T Consensus 53 ~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~ 132 (188)
T 1rut_X 53 SGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALIN 132 (188)
T ss_dssp TTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC-
T ss_pred CCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcc
Confidence 4566777655 22333 799999999765 4678999999999999999999996 45788999999999999999999
Q ss_pred ccccCCC
Q 018059 221 KCDVCQN 227 (361)
Q Consensus 221 kC~~C~~ 227 (361)
+|...+.
T Consensus 133 ~~~~~g~ 139 (188)
T 1rut_X 133 GHLNSGG 139 (188)
T ss_dssp -------
T ss_pred cccccCC
Confidence 9987775
No 54
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.02 E-value=7e-11 Score=98.86 Aligned_cols=73 Identities=18% Similarity=0.372 Sum_probs=62.5
Q ss_pred CCCccCCCCC-CCCCCcCccCCCccccC-ceEEeCCceec--CCCcccCCCCCCCCCcceeecCCcccchhhhhhhc
Q 018059 146 SGNIFQPFPF-FSGYRICAGCNTEIGHG-RYLSCMEAFWH--PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH 218 (361)
Q Consensus 146 ~gs~~~p~~~-~~~~~~C~~C~~~I~~g-e~l~a~gk~wH--~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f 218 (361)
.|.+|+...+ ....++|++|+++|..+ ..|.++++.|| +.||+|..|+++|.+..|+..+|++||..+|.++|
T Consensus 49 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 49 NDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp TTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCEEechHHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 4556666555 45678999999999764 67899999999 99999999999999888999999999998888766
No 55
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.93 E-value=6.7e-10 Score=84.62 Aligned_cols=63 Identities=16% Similarity=0.377 Sum_probs=53.4
Q ss_pred hcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhcc
Q 018059 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 293 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~ 293 (361)
+|+++|..|+++|.+. +|.+.++. | |..||+|..|++.|..+..|+. .++.+||..||..+..
T Consensus 3 ~~~~~C~~C~~~I~~~---~v~a~~~~-w---------H~~CF~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 3 SGSSGCDSCEKYITGR---VLEAGEKH-Y---------HPSCALCVRCGQMFAEGEEMYL-QGSSIWHPACRQAART 65 (73)
T ss_dssp CSCCSCSSSCCCCSSC---CBCCSSCC-B---------CTTTSCCSSSCCCCCSSCCCEE-ETTEEECTTHHHHTSS
T ss_pred cCcCCcccCCCEecCe---eEEeCCCC-C---------CCCcCEeCCCCCCCCCCCeeEe-eCCEEEChHHChHhhc
Confidence 5889999999999973 67777775 4 9999999999999965788876 5799999999987643
No 56
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.86 E-value=4.4e-10 Score=98.92 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=62.8
Q ss_pred CCCccCCCCC-CCCCCcCccCCCccccCc-eEEeCCceecCCCcccCCCCCCCCC-ccee-ecCCcccchhhhhhhcCCc
Q 018059 146 SGNIFQPFPF-FSGYRICAGCNTEIGHGR-YLSCMEAFWHPECFRCHSCNLPITD-VEFS-MSGNRPYHKHCYKEQHHPK 221 (361)
Q Consensus 146 ~gs~~~p~~~-~~~~~~C~~C~~~I~~ge-~l~a~gk~wH~~CF~C~~C~~~L~~-~~f~-~~dg~~YC~~CY~~~f~pk 221 (361)
.|.+|+...+ ....++|.+|+++|...+ ++.++++.||+.||+|..|+++|.. ..|+ ..+|++||+.||.+.+...
T Consensus 51 ~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 51 GESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG 130 (169)
T ss_dssp SSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC
T ss_pred CCeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhcc
Confidence 5667777666 556789999999997655 4689999999999999999999974 4565 4689999999999988765
Q ss_pred cc
Q 018059 222 CD 223 (361)
Q Consensus 222 C~ 223 (361)
+.
T Consensus 131 ~~ 132 (169)
T 2rgt_A 131 SG 132 (169)
T ss_dssp --
T ss_pred CC
Confidence 53
No 57
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=98.82 E-value=1.3e-09 Score=97.13 Aligned_cols=72 Identities=22% Similarity=0.382 Sum_probs=59.3
Q ss_pred CCCccCCCCC-CCCCCcCccCCCccccCc-eEEeCCceecCCCcccCCCCCCCCC-ccee-ecCCcccchhhhhhh
Q 018059 146 SGNIFQPFPF-FSGYRICAGCNTEIGHGR-YLSCMEAFWHPECFRCHSCNLPITD-VEFS-MSGNRPYHKHCYKEQ 217 (361)
Q Consensus 146 ~gs~~~p~~~-~~~~~~C~~C~~~I~~ge-~l~a~gk~wH~~CF~C~~C~~~L~~-~~f~-~~dg~~YC~~CY~~~ 217 (361)
.|.+|+...+ ....++|.+|+++|...+ ++.++++.||+.||+|..|+++|.. ..|+ ..+|++||+.||.++
T Consensus 105 ~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 105 GESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp TTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred CCEeeecCccccccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 5667777666 566789999999997654 5689999999999999999999974 4565 468999999999864
No 58
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.82 E-value=3.4e-09 Score=83.67 Aligned_cols=70 Identities=16% Similarity=0.435 Sum_probs=56.7
Q ss_pred ccchhhhhhhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhh
Q 018059 208 PYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLEC 287 (361)
Q Consensus 208 ~YC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C 287 (361)
..+...+...+.++|..|+++|.+. .|.+.++. | |..||+|..|++.|. +..|+. .+|.+||..|
T Consensus 14 ~~~~~~~~~~~~~~C~~C~~~I~~~---~v~a~~~~-~---------H~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~c 78 (90)
T 2dar_A 14 QRAEHIPAGKRTPMCAHCNQVIRGP---FLVALGKS-W---------HPEEFNCAHCKNTMA-YIGFVE-EKGALYCELC 78 (90)
T ss_dssp BCCEEECTTTCCCBBSSSCCBCCSC---EEEETTEE-E---------CTTTCBCSSSCCBCS-SSCBEE-SSSCEECHHH
T ss_pred hhcccCCCCCCCCCCccCCCEecce---EEEECCcc-c---------cccCCccCCCCCCCC-CCEeEe-ECCEEECHHH
Confidence 3344456778899999999999753 67787776 4 999999999999994 566775 6899999999
Q ss_pred hhhhc
Q 018059 288 LDSAI 292 (361)
Q Consensus 288 ~~~~v 292 (361)
|..++
T Consensus 79 y~~~f 83 (90)
T 2dar_A 79 YEKFF 83 (90)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98764
No 59
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.81 E-value=2.1e-09 Score=82.12 Aligned_cols=71 Identities=18% Similarity=0.394 Sum_probs=55.7
Q ss_pred hhcCCccccCCCccccC-CccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhccC
Q 018059 216 EQHHPKCDVCQNFIPTN-SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD 294 (361)
Q Consensus 216 ~~f~pkC~~C~~~I~~~-~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~d 294 (361)
++|+++|..|+++|.+. .+..|.+.++. | |..||+|..|++.|. +..|+. .+|++||..||..++
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~-w---------H~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~cy~~~f-- 67 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQ-W---------HSECFNCGKCSVSLV-GKGFLT-QNKEIFCQKCGSGMD-- 67 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEE-E---------EGGGCBCTTTCCBCS-SSCEEE-ETTEEEETTTTCCCC--
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcc-c---------CcccCChhhCCCcCC-CCceEe-ECCEEECHHHhhhhh--
Confidence 46899999999999961 12467777775 5 999999999999994 777876 689999999998754
Q ss_pred CCCCch
Q 018059 295 THECQP 300 (361)
Q Consensus 295 ~~~cq~ 300 (361)
...|.+
T Consensus 68 ~~~C~~ 73 (76)
T 1x68_A 68 TDISGP 73 (76)
T ss_dssp CCSSSS
T ss_pred CCcCCC
Confidence 335543
No 60
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.81 E-value=2.7e-09 Score=89.17 Aligned_cols=67 Identities=13% Similarity=0.280 Sum_probs=55.4
Q ss_pred hhhhcCC--ccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhh
Q 018059 214 YKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (361)
Q Consensus 214 Y~~~f~p--kC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~ 291 (361)
|.++|++ +|..|+++|.+.+ .+|.+.++. | |..||+|..|++.|..|..|+. .++.+||..||..+
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e-~~~~a~~~~-~---------H~~CF~C~~C~~~L~~g~~f~~-~~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYE-MTMRVKDKV-Y---------HLECFKCAACQKHFSVGDRYLL-INSDIVCEQDIYEW 68 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTC-CCCCCSSCC-C---------CTTTCBCTTTCCBCCTTCEEEE-CSSSEEEGGGHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCc-eEEEECCcc-c---------ccccCccccCCCCCCCCCcEEe-eCCEEEcHHHhHHH
Confidence 5678998 9999999999642 355676665 4 9999999999999977888886 57999999999875
Q ss_pred c
Q 018059 292 I 292 (361)
Q Consensus 292 v 292 (361)
+
T Consensus 69 ~ 69 (123)
T 2l3k_A 69 T 69 (123)
T ss_dssp H
T ss_pred h
Confidence 3
No 61
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.79 E-value=5.9e-09 Score=78.55 Aligned_cols=64 Identities=14% Similarity=0.331 Sum_probs=52.7
Q ss_pred hcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhcc
Q 018059 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 293 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~ 293 (361)
+++++|..|+++|.+.. ..|.+.++. | |..||+|..|++.| .+..|+. .++.+||..||..++.
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~~-~---------H~~CF~C~~C~~~L-~~~~~~~-~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-AGVVALDRV-F---------HVGCFVCSTCRAQL-RGQHFYA-VERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-CCEECSSSE-E---------CTTTCBCSSSCCBC-TTSCEEE-SSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCc-eEEEECCCe-E---------cccCCcccccCCcC-CcCcCEe-eCCeEECHHHHHHHHc
Confidence 46899999999999631 367777775 4 99999999999999 5777876 5799999999988654
No 62
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.78 E-value=5.3e-09 Score=78.26 Aligned_cols=61 Identities=18% Similarity=0.587 Sum_probs=51.5
Q ss_pred hcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
+++++|..|+++|.+. .|.+.++. | |..||+|..|++.|. +..|+. .++++||..||..++
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~~-~---------H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG---GITYQDQP-W---------HADCFVCVTCSKKLA-GQRFTA-VEDQYYCVDCYKNFV 63 (69)
T ss_dssp CCCCCCSSSCCCCCTT---CEEETTEE-E---------CTTTTBCTTTCCBCT-TSCEEE-CSSCEEEHHHHHHHH
T ss_pred CCcCCCcccCCEeCcc---eEEECccc-c---------ccCcCEECCCCCCCC-CCccEe-ECCEEECHHHhHHHh
Confidence 4688999999999864 57787776 4 999999999999994 677875 679999999998764
No 63
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.77 E-value=2.4e-09 Score=79.50 Aligned_cols=62 Identities=16% Similarity=0.370 Sum_probs=50.8
Q ss_pred hhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
++|.++|.+|+++|.+. .|.+.++. | |..||+|..|++.|. +..|+. .+|.+||..||..++
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~~-~---------H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 2 SMGVPICGACRRPIEGR---VVNAMGKQ-W---------HVEHFVCAKCEKPFL-GHRHYE-RKGLAYCETHYNQLF 63 (66)
T ss_dssp CCCCCEETTTTEECCSC---EECCTTSB-E---------ETTTCBCTTTCCBCS-SSCCEE-ETTEEECHHHHHHHC
T ss_pred CcCCCCCcccCCEecce---EEEECccc-c---------ccCcCEECCCCCCCC-CCceEe-ECCcEECHHHHHHHh
Confidence 35789999999999943 57777765 4 999999999999984 566775 689999999998754
No 64
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=5.5e-09 Score=78.29 Aligned_cols=61 Identities=23% Similarity=0.584 Sum_probs=51.1
Q ss_pred hcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
+++++|..|+++|.+. .|.+.++. | |..||+|..|++.| .+..|+. .++++||..||..++
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~~-~---------H~~CF~C~~C~~~L-~~~~~~~-~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTG---GVTYREQP-W---------HKECFVCTACRKQL-SGQRFTA-RDDFAYCLNCFCDLY 63 (70)
T ss_dssp CCCCBCSSSCCBCCSS---EEESSSSE-E---------ETTTSBCSSSCCBC-TTSCCEE-SSSSEECHHHHHHHT
T ss_pred CCCCCCcccCCeeccc---eEEECccc-c---------CCCCCccCCCCCcC-CcCceEe-eCCeEECHHHHHHHh
Confidence 5789999999999864 57777775 4 99999999999999 4667775 689999999998764
No 65
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.76 E-value=3.6e-09 Score=78.56 Aligned_cols=61 Identities=23% Similarity=0.587 Sum_probs=49.7
Q ss_pred cCCccccCCCccccCCccceEeeccccccccCCCCccc--CCCCccCCCCCcCCCCCceEEccCCCccC-hhhhhhh
Q 018059 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHER--DGTPRCCSCERMEPRDTKYLSLDDGRKLC-LECLDSA 291 (361)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H--~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C-~~C~~~~ 291 (361)
|+++|.+|+++|.+. +..|.+.++. | | ..||+|..|++.| .+..|+. .+|++|| ..||..+
T Consensus 1 fa~~C~~C~~~I~~~-~~~v~a~~~~-w---------H~~~~CF~C~~C~~~L-~~~~f~~-~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPE-VQRVTYNNFS-W---------HASTECFLCSCCSKCL-IGQKFMP-VEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTT-SCEEEETTEE-E---------ETTTTTSBCTTTCCBC-TTSCCEE-ETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccC-ceEEEECCCc-c---------CCCCCCEECCCCCCcC-CCCceEE-ECCEEecCHHHhhhh
Confidence 578999999999953 1367888876 4 8 9999999999999 5677875 5799999 9999764
No 66
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.76 E-value=5.7e-09 Score=78.54 Aligned_cols=64 Identities=17% Similarity=0.566 Sum_probs=52.0
Q ss_pred hhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
++|+++|..|+++|...+ .+|.+.++. | |..||+|..|++.|.. ..|+. .+|++||..||..++
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~~-~---------H~~CF~C~~C~~~L~~-~~~~~-~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGT-RKMEYKGSS-W---------HETCFICHRCQQPIGT-KSFIP-KDNQNFCVPCYEKQH 65 (72)
T ss_dssp CSCCCCBSSSCCCCCSSS-CEEEETTEE-E---------ETTTTCCSSSCCCCCS-SSEEE-ETTEEEEHHHHHHHT
T ss_pred CccCCCCccCCCcccCCc-eEEEECcCe-e---------cccCCcccccCCccCC-CccCc-cCCeEECHHHHhHHh
Confidence 468999999999999642 367777775 4 9999999999999954 47775 579999999998764
No 67
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.75 E-value=6.9e-09 Score=78.25 Aligned_cols=64 Identities=19% Similarity=0.437 Sum_probs=51.6
Q ss_pred hcCCccccCCCccccC-CccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 217 QHHPKCDVCQNFIPTN-SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~-~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
.+.++|..|+++|.+. ...+|.+.++. | |..||+|..|++.| .+..|+. .+|++||..||..++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~-w---------H~~CF~C~~C~~~L-~~~~f~~-~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQ-W---------HNDCFNCKKCSLSL-VGRGFLT-ERDDILCPDCGKDIS 67 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCE-E---------CTTTCBCSSSCCBC-TTSCCEE-CSSSEECHHHHHTCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcc-c---------CcccCEeccCCCcC-CCCccEe-ECCEEEChhHcCccc
Confidence 4678999999999961 12467777775 4 99999999999999 4777775 689999999998754
No 68
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.74 E-value=4.1e-09 Score=78.97 Aligned_cols=66 Identities=14% Similarity=0.393 Sum_probs=51.9
Q ss_pred hhhhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 214 YKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
|...+.++|..|+++|.+.+ .++.+.++. | |..||+|..|++.|..+ .|+. .+|++||..||..++
T Consensus 6 y~~~~~~~C~~C~~~i~~~e-~~~~~~~~~-~---------H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAE-KIVNSNGEL-Y---------HEQCFVCAQCFQQFPEG-LFYE-FEGRKYCEHDFQMLF 71 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTC-EEEEETTEE-E---------ETTTSSCTTTCCCCGGG-CCEE-ETTEEECHHHHHHHT
T ss_pred ccCcCCccchhcCccccCCc-eEEEeCcCe-e---------CcCCCcccCCCCCCCCC-CeEe-ECCeEeCHHHHHHhh
Confidence 34567899999999999753 245566665 4 99999999999999655 6665 579999999998753
No 69
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.70 E-value=9e-09 Score=77.44 Aligned_cols=64 Identities=20% Similarity=0.595 Sum_probs=51.1
Q ss_pred hhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
++|+++|..|+++|.... .+|.+.++. | |..||+|..|++.|. +..|+. .+|.+||..||..++
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~~-~---------H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGS-RKLEYGGQT-W---------HEHCFLCSGCEQPLG-SRSFVP-DKGAHYCVPCYENKF 65 (72)
T ss_dssp CCCCCBCSSSCCBCCSSS-CEECSTTCC-E---------ETTTCBCTTTCCBTT-TSCEEE-ETTEEEEHHHHHHHT
T ss_pred CccCCCCccCCCccccCc-cEEEECccc-c---------CcccCeECCCCCcCC-CCccCC-cCCeEECHHHHHHHc
Confidence 467899999999999631 356666665 4 999999999999995 446775 589999999998754
No 70
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.69 E-value=1.7e-08 Score=75.68 Aligned_cols=61 Identities=23% Similarity=0.554 Sum_probs=50.6
Q ss_pred cCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhcc
Q 018059 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 293 (361)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~ 293 (361)
+.++|..|+++|.+. .|.+.++. | |..||+|..|++.|..+ .|+. .+|++||..||...+.
T Consensus 4 ~~~~C~~C~~~I~~~---~~~a~~~~-~---------H~~CF~C~~C~~~L~~~-~f~~-~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR---VIKAMNNS-W---------HPECFRCDLCQEVLADI-GFVK-NAGRHLCRPCHNREKA 64 (70)
T ss_dssp CSSBCSSSCCBCCSC---CEEETTEE-E---------CTTTSBCSSSCCBCSSS-CCEE-ETTEEECHHHHHHHHC
T ss_pred CCCcCccCCCEecce---EEEECccc-c---------cccCCEeCCCCCcCCCC-ccEe-ECCeEECHHHhhhhcC
Confidence 578999999999863 67787776 4 99999999999999544 5764 6899999999988654
No 71
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.67 E-value=1.2e-08 Score=85.71 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=52.2
Q ss_pred hhcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCC-CCCceEEccCCCccChhhhhhhc
Q 018059 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP-RDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~-~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
..+.++|..|+++|.+. .++.+.++. | |..||+|..|++.|. .|..|+. .+|++||..||..++
T Consensus 58 ~~~~~~C~~C~~~I~~~--~~v~a~~~~-w---------H~~CF~C~~C~~~L~~~g~~f~~-~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADR--FLLYAMDSY-W---------HSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLF 122 (123)
T ss_dssp CSSCSBBSSSSSBCCSS--SEEEETTEE-E---------ETTTSBCTTTCCBGGGTTCCCBC-SSSCCBCHHHHHHHC
T ss_pred CccCCcCcCCCCCcCCc--EEEEeCCcE-E---------cccccCcCcCCCcccccCCceEE-ECCEEeCHHHhhhhc
Confidence 35678999999999964 257777775 4 999999999999995 3677875 689999999998753
No 72
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.63 E-value=2.3e-08 Score=76.26 Aligned_cols=62 Identities=16% Similarity=0.412 Sum_probs=50.8
Q ss_pred hcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccCh-hhhhhhc
Q 018059 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAI 292 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~-~C~~~~v 292 (361)
.+.++|..|+++|.... .|.+.++. | |..||+|..|++.|. +..|+. .++.+||. .||..++
T Consensus 7 ~~~~~C~~C~~~I~~~~--~v~a~~~~-~---------H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~cy~~~f 69 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAE--KVSSLGKD-W---------HKFCLKCERCSKTLT-PGGHAE-HDGKPFCHKPCYATLF 69 (76)
T ss_dssp CCCCBCTTTCCBCCTTT--EEEETTEE-E---------ETTTCBCSSSCCBCC-TTSCEE-ETTEEECTTTHHHHHS
T ss_pred CCCCCCcCCCCEeECCe--EEEECCeE-e---------eCCCCCCCCCCCccC-CCceEe-ECCEEecchHHHHHhc
Confidence 46789999999999543 67777775 4 999999999999994 566775 58999999 7998764
No 73
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.57 E-value=3.6e-08 Score=76.07 Aligned_cols=60 Identities=18% Similarity=0.438 Sum_probs=48.9
Q ss_pred hcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
.+.++|..|+++|.+. .|.+.++. | |..||+|..|++.|.. ..| . .+|.+||..||..++
T Consensus 13 ~~~~~C~~C~~~I~~~---~v~a~~~~-~---------H~~CF~C~~C~~~L~~-~~f-~-~~g~~yC~~cy~~~f 72 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ---PLIFKNDP-Y---------HPDHFNCANCGKELTA-DAR-E-LKGELYCLPCHDKMG 72 (79)
T ss_dssp CCCCBCTTTCCBCCSC---CCCCSSSC-C---------CTTTSBCSSSCCBCCT-TCE-E-ETTEEECHHHHHTTS
T ss_pred cCCCCCccCCCEecce---EEEECcce-e---------CCCCCEeCCCCCccCC-CCE-e-ECCEEeCHHHHHHhC
Confidence 4678999999999953 57777776 4 9999999999999954 445 3 589999999998754
No 74
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.57 E-value=2.9e-08 Score=75.59 Aligned_cols=63 Identities=14% Similarity=0.371 Sum_probs=50.4
Q ss_pred hcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
.+.++|..|+++|.+.+ .++.+.++. | |..||+|..|++.|..+ .|+. .+|++||..||..++
T Consensus 9 ~~~~~C~~C~~~I~~~~-~~~~a~~~~-~---------H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~~f 71 (77)
T 1g47_A 9 LASATCERCKGGFAPAE-KIVNSNGEL-Y---------HEQCFVCAQCFQQFPEG-LFYE-FEGRKYCEHDFQMLF 71 (77)
T ss_dssp CCCCBCSSSCCBCCSTT-TCEEETTEE-E---------CTTTCCCTTTCCCCGGG-CSEE-ETTEEECHHHHHHHC
T ss_pred CCCCCchhcCCccCCCc-eEEEeCccE-e---------ccccCeECCCCCCCCCC-CeEe-ECCeEeCHHHHHHHh
Confidence 46789999999998532 356677775 4 99999999999999555 5665 589999999998754
No 75
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.55 E-value=2.2e-08 Score=77.09 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=50.0
Q ss_pred cCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhcc
Q 018059 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 293 (361)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~ 293 (361)
..++|..|+++|.+. +|.+.++. | |..||+|..|++.| .+..|+. .++.+||..||..++.
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~-~---------H~~CF~C~~C~~~L-~~~~~~~-~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRH-R---------HPECYVCTDCGTNL-KQKGHFF-VEDQIYCEKHARERVS 74 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCE-E---------CTTTTSCSSSCCCH-HHHCCEE-SSSCEECHHHHHHHHS
T ss_pred CCCccccCCCCccCc---EEEECcce-e---------CcCcCeeCCCCCCC-CCCCeEe-ECCEEECHHHHHHHhC
Confidence 357999999999974 67777775 4 99999999999998 4556775 5799999999987653
No 76
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.55 E-value=6.1e-08 Score=75.29 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=48.5
Q ss_pred CCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEE-ccCCCccChhhhhhhcc
Q 018059 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLS-LDDGRKLCLECLDSAIM 293 (361)
Q Consensus 219 ~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~-~~dg~~~C~~C~~~~v~ 293 (361)
.++|..|+++|.... .+.+.++. | |..||+|..|++.|. +..|+. ..+|++||..||..++.
T Consensus 15 ~~~C~~C~~~I~~~e--~v~a~~~~-w---------H~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 15 GDLCALCGEHLYVLE--RLCVNGHF-F---------HRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp SCBCSSSCCBCCTTT--BCCBTTBC-C---------BTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCcccCCCcccce--EEEECCCe-e---------CCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhhhc
Confidence 568999999997532 56666665 4 999999999999984 455653 36899999999987654
No 77
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.54 E-value=5.4e-08 Score=76.53 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=48.8
Q ss_pred cCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
..++|..|++.|.+. +|.+.++. | |..||+|..|++.|. +..|+. .++.+||..||..++
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~~-~---------H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~y~~~f 83 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDKY-R---------HPECFVCADCNLNLK-QKGYFF-VEGELYCETHARART 83 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSCE-E---------CTTTCCCSSSCCCTT-TSCCEE-ETTEEECHHHHHHHS
T ss_pred cCCCcccCCCEeccc---EEEECCce-E---------CccCCEecCCCCCCC-CCCeEe-ECCEEECHHHHHHHh
Confidence 357999999999973 57777765 4 999999999999994 445665 479999999998765
No 78
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.54 E-value=6.2e-08 Score=75.00 Aligned_cols=60 Identities=18% Similarity=0.411 Sum_probs=48.9
Q ss_pred CCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhcc
Q 018059 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 293 (361)
Q Consensus 219 ~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~ 293 (361)
.++|..|+++|.... .|.+.++. | |..||+|..|++.|. + .|+. .+|++||..||..++.
T Consensus 15 ~~~C~~C~~~I~~~~--~v~a~~~~-w---------H~~CF~C~~C~~~L~-~-~~~~-~~g~~yC~~~y~~~fg 74 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ--SLLALDKQ-W---------HVSCFKCQTCSVILT-G-EYIS-KDGVPYCESDYHAQFG 74 (80)
T ss_dssp CSCCTTTCCCCSSSC--CEEETTEE-E---------CTTTCBCSSSCCBCS-S-CCEE-ETTEEECTTHHHHHTT
T ss_pred CCCCcCcCCeeCCCe--EEEECCcc-c---------ccccCCcCcCCCCcC-C-CeEE-ECCEEECHHHHHHHcC
Confidence 568999999998532 67777775 5 999999999999985 5 5765 6899999999988653
No 79
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.52 E-value=1.2e-08 Score=85.19 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=58.0
Q ss_pred hcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCC-CCCceEEccCCCccChhhhhhhccCC
Q 018059 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP-RDTKYLSLDDGRKLCLECLDSAIMDT 295 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~-~g~~f~~~~dg~~~C~~C~~~~v~d~ 295 (361)
++.++|..|+++|.+.. ++.+.++. | |..||+|..|++.|. .+..|+. .+|++||..||..++...
T Consensus 3 ~~~~~C~~C~~~I~~~~--~~~a~~~~-w---------H~~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~~ 69 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF--LLYAMDSY-W---------HSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNS 69 (122)
T ss_dssp SCCCCBSSSSSCCCSSC--CEEETTEE-E---------CHHHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCCC
T ss_pred CCCCCCcccCCEeCCcE--EEEECCce-e---------HhhCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCCC
Confidence 46789999999999752 57777776 5 999999999999985 2567775 689999999999876442
Q ss_pred CCCchhhHHH
Q 018059 296 HECQPLYLEI 305 (361)
Q Consensus 296 ~~cq~~~~~i 305 (361)
..|..+-..|
T Consensus 70 ~~C~~C~~~I 79 (122)
T 1m3v_A 70 GAGGSGGHMG 79 (122)
T ss_dssp CSSSCSSCCS
T ss_pred CccccCCCCc
Confidence 3555553333
No 80
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.49 E-value=6.3e-08 Score=76.48 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=50.3
Q ss_pred hcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhcc
Q 018059 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 293 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~ 293 (361)
...++|..|+++|.+.. .|.+.++. | |..||+|..|++.|..+ .|+. .++++||..||..++.
T Consensus 13 ~~~~~C~~C~~~I~~~~--~v~a~~~~-~---------H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 13 PARETCVECQKTVYPME--RLLANQQV-F---------HISCFRCSYCNNKLSLG-TYAS-LHGRIYCKPHFNQLFK 75 (91)
T ss_dssp SSSCBCTTTCCBCCTTS--EEECSSSE-E---------ETTTCBCTTTCCBCCTT-TCCC-SSSCCCCHHHHHHHSC
T ss_pred CCCCcCccCCCccCCce--eEEECCCE-E---------CCCCCeeCCCCCCCCCC-CcEe-ECCEEECHHHHHHHhC
Confidence 35789999999998643 56666665 4 99999999999999554 4664 6899999999987654
No 81
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.49 E-value=5.5e-08 Score=74.98 Aligned_cols=61 Identities=15% Similarity=0.323 Sum_probs=48.3
Q ss_pred cCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhc
Q 018059 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 292 (361)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v 292 (361)
..++|..|+++|.... .+.+.++. | |..||+|..|++.|.. ..|+. .++++||..||..++
T Consensus 6 ~~~~C~~C~~~I~~~~--~~~a~~~~-~---------H~~CF~C~~C~~~L~~-~~~~~-~~~~~yC~~cy~~~f 66 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE--EVQCDGRS-F---------HRCCFLCMVCRKNLDS-TTVAI-HDAEVYCKSCYGKKY 66 (81)
T ss_dssp --CBCSSSCCBCSSTT--EEEETTEE-E---------ESSSEECSSSCCEECS-SCCEE-ETTEEECSHHHHHHC
T ss_pred CCCcCcCcCccccCce--eEEeCCcc-c---------ccccCccCCCCCCCCC-CCeEe-eCCEEECHHHHHHHh
Confidence 4689999999997543 57777765 4 9999999999999954 45765 589999999998764
No 82
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.49 E-value=9.5e-08 Score=72.77 Aligned_cols=60 Identities=17% Similarity=0.444 Sum_probs=48.3
Q ss_pred CccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccCh-hhhhhhcc
Q 018059 220 PKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIM 293 (361)
Q Consensus 220 pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~-~C~~~~v~ 293 (361)
|+|..|+++|... ..|.+.++. | |..||+|..|++.|..+ .|+. .+|.+||. .||..++.
T Consensus 1 p~C~~C~~~I~~~--~~v~a~~~~-~---------H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~cy~~~f~ 61 (76)
T 1iml_A 1 PKCPKCDKEVYFA--ERVTSLGKD-W---------HRPCLKCEKCGKTLTSG-GHAE-HEGKPYCNHPCYSAMFG 61 (76)
T ss_dssp CBCTTTSSBCCGG--GEEEETTEE-E---------ETTTCBCTTTCCBCCTT-TEEE-ETTEEEETTTHHHHHSS
T ss_pred CcCCCCCCEEECc--eEEEECCcc-c---------cCCCCCccccCccCCCC-ceEC-cCCeEeeCHHHHHHHhC
Confidence 6899999999853 257777765 4 99999999999999544 6775 68999999 69987653
No 83
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.47 E-value=6.4e-08 Score=77.50 Aligned_cols=71 Identities=20% Similarity=0.526 Sum_probs=55.1
Q ss_pred hcCCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhhhccCCC
Q 018059 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (361)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~d~~ 296 (361)
++.++|..|+++|... ...+.+.++. | |..||+|..|++.| .+..|+. .+|++||..||..+.. +
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~~~a~~~~-~---------H~~CF~C~~C~~~L-~~~~~~~-~~g~~yC~~cy~~~~~--~ 67 (101)
T 2cup_A 3 SGSSGCVECRKPIGAD-SKEVHYKNRF-W---------HDTCFRCAKCLHPL-ANETFVA-KDNKILCNKCTTREDS--P 67 (101)
T ss_dssp SCCCBCSSSCCBCCSS-SCEEEETTEE-E---------ETTTCCCSSSCCCT-TSSCCEE-ETTEEECHHHHTTCCC--C
T ss_pred CCCCcCcccCCcccCC-ceEEEECccC-h---------hhcCCcccccCCCC-CcCeeEC-cCCEEEChhHhhhhcC--C
Confidence 4678999999999742 2367777775 4 99999999999999 5667775 5899999999987643 3
Q ss_pred CCchhh
Q 018059 297 ECQPLY 302 (361)
Q Consensus 297 ~cq~~~ 302 (361)
.|..+.
T Consensus 68 ~C~~C~ 73 (101)
T 2cup_A 68 KCKGCF 73 (101)
T ss_dssp BCSSSC
T ss_pred ccccCC
Confidence 555543
No 84
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.45 E-value=8.6e-08 Score=78.95 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=51.0
Q ss_pred CCccccCCCccccCCccceEeeccccccccCCCCcccCCCCccCCCCCcCCC-CCceEEccCCCccChhhhhhhccC
Q 018059 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMD 294 (361)
Q Consensus 219 ~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~-g~~f~~~~dg~~~C~~C~~~~v~d 294 (361)
.++|..|+++|.+. ..+.+.++. | |..||+|..|++.|.. |..|+. .+|++||..||..++..
T Consensus 3 ~~~C~~C~~~I~~~--~~~~a~~~~-w---------H~~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR--YFLKAIDQY-W---------HEDCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp CBCBSSSCSCBCSS--EEEECSSSE-E---------CTTTCCCSSSCSCCCCSSSCCCC-BTTBCCCHHHHHHHHTS
T ss_pred CCCCcCCCCeeCCc--EEEEECchh-H---------HHhcCcccccCCchhcCCCeeEE-ECCeeechHHHHHHhCc
Confidence 46899999999964 256777765 5 9999999999999963 567875 68999999999886543
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.60 E-value=1.5e-05 Score=50.80 Aligned_cols=29 Identities=31% Similarity=0.881 Sum_probs=27.1
Q ss_pred CCcCccCCCccccCceEEeCCceecCCCc
Q 018059 159 YRICAGCNTEIGHGRYLSCMEAFWHPECF 187 (361)
Q Consensus 159 ~~~C~~C~~~I~~ge~l~a~gk~wH~~CF 187 (361)
...|+.|++.|+..+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 46899999999999999999999999998
No 86
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=94.66 E-value=0.016 Score=34.75 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.6
Q ss_pred CChhHHHHHHHhhhhhhhhcCCc
Q 018059 40 FDNEEIDRAIALSLVEVDQKGKK 62 (361)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~ 62 (361)
.|.|||.-|||||++|...+.++
T Consensus 2 ~EeEEl~LAlAlS~sEae~~~~~ 24 (26)
T 2d3g_P 2 QEEEELQLALALSQSEAEEKXXX 24 (26)
T ss_pred chHHHHHHHHHHHHHHHHHhccc
Confidence 46889999999999998877665
No 87
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=87.24 E-value=0.17 Score=31.63 Aligned_cols=29 Identities=14% Similarity=0.450 Sum_probs=21.8
Q ss_pred CCccccCCCccccCCccceEeeccccccccCCCCcccCCCC
Q 018059 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP 259 (361)
Q Consensus 219 ~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~Cf 259 (361)
.++|..|++.+...+ .+.+.++. | |..||
T Consensus 3 ~~~C~~C~k~Vy~~E--k~~~~g~~-~---------Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE--KVNCLDKF-W---------HKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG--CCCSSSSC-C---------CGGGC
T ss_pred CCcCCccCCEEecce--eEEECCeE-e---------cccCC
Confidence 468999999998753 56677766 3 88776
No 88
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=82.07 E-value=0.67 Score=37.28 Aligned_cols=98 Identities=17% Similarity=0.424 Sum_probs=59.8
Q ss_pred cccCCCCCCCCCc------ceeecCCcccchhhhhhhc--CCccccCCCccccCCccceEeeccccccccCCCCcccCCC
Q 018059 187 FRCHSCNLPITDV------EFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGT 258 (361)
Q Consensus 187 F~C~~C~~~L~~~------~f~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~~~~~~i~~~~~pfW~~~yCp~h~H~~C 258 (361)
+.|..|...+... .....=|+.||..|..+.+ ...|..|...+.... +... |. ...-
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~---l~~l---~i---------~~~~ 72 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR---YHPI---YI---------GSGT 72 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC---EEEC---BC---------SSSS
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc---cccc---cc---------CCCC
Confidence 5666676655331 1344567889999987653 358999999998653 2111 10 2344
Q ss_pred CccCCCCCcCCC----CCceEEccCCCccChhhhhhhccCCCCCc
Q 018059 259 PRCCSCERMEPR----DTKYLSLDDGRKLCLECLDSAIMDTHECQ 299 (361)
Q Consensus 259 f~C~~C~r~l~~----g~~f~~~~dg~~~C~~C~~~~v~d~~~cq 299 (361)
..|..|...+.. +...+...=|..+|..|..........|.
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP 117 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 117 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCT
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCC
Confidence 678888875522 22334556789999999876543333443
No 89
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.06 E-value=0.41 Score=39.60 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=19.9
Q ss_pred CCCCCCChhHHHHHHHhhhhhhhh
Q 018059 35 DDSSGFDNEEIDRAIALSLVEVDQ 58 (361)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~ 58 (361)
.|++..+++||-|||||||.|..+
T Consensus 89 idlt~d~KDDLQ~AIALSLqES~~ 112 (129)
T 2lva_A 89 IDLTHDNKDDLQAAIALSLLESPK 112 (129)
Confidence 356667899999999999988765
No 90
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=77.34 E-value=0.93 Score=34.85 Aligned_cols=20 Identities=40% Similarity=0.386 Sum_probs=16.2
Q ss_pred CCCChhHHHHHHHhhhhhhh
Q 018059 38 SGFDNEEIDRAIALSLVEVD 57 (361)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~ 57 (361)
.+.+.|||-|||+|||-|..
T Consensus 8 ~~~eDeDLkrAieLSL~Es~ 27 (81)
T 1q0v_A 8 PEDEEELIRKAIELSLKESR 27 (81)
T ss_dssp CSSHHHHHHHHHHHHHHCCC
T ss_pred ccCchHHHHHHHHHhHHHHc
Confidence 35678999999999996643
No 91
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.73 E-value=3.2 Score=29.98 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=30.0
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc--CCccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~~ 232 (361)
+.|..|...+........=|+.||..|..+.+ ...|..|...|...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 45566655554422222456788988876544 56899999988764
No 92
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.02 E-value=3.1 Score=33.21 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=28.1
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCcccc
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPT 231 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~ 231 (361)
+.|..|...+..-.....=|+.||..|....+...|..|...+..
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 455555555543222214567788888777666788888887754
No 93
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.57 E-value=3.2 Score=29.36 Aligned_cols=45 Identities=22% Similarity=0.637 Sum_probs=29.1
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc---CCccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 232 (361)
+.|..|...+.... ...=|+.||..|..+.+ ...|..|+..|...
T Consensus 16 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 44555554443321 23456789999988765 35799999988754
No 94
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=69.36 E-value=5.2 Score=29.13 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=33.9
Q ss_pred CCCcccCCCCCCCCCcceeecCCcccchhhhhhhc---CCccccCCCcccc
Q 018059 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPT 231 (361)
Q Consensus 184 ~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~ 231 (361)
+.-|.|..|...+.. .....-|+.||..|..+.+ ...|..|+..+..
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 345778888877765 3444678999999987655 3468888888765
No 95
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.40 E-value=3.9 Score=29.31 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=28.3
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhcC-----CccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH-----PKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~-----pkC~~C~~~I~~~ 232 (361)
+.|..|...+.. .....=|+.||..|..+.+. .+|..|...|...
T Consensus 21 ~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 445555554443 22224567788888877653 3799999888753
No 96
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=65.73 E-value=4.8 Score=30.85 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.8
Q ss_pred CCCChhHHHHHHHhhhhhhh
Q 018059 38 SGFDNEEIDRAIALSLVEVD 57 (361)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~ 57 (361)
.+.|.+||-.|||.||.|-.
T Consensus 51 ~edeD~DLKAAIaASLrd~E 70 (81)
T 1q0v_A 51 EEEEDPDLKAAIQESLREAE 70 (81)
T ss_dssp CCCSCHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHH
Confidence 46778999999999997654
No 97
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=64.83 E-value=11 Score=29.37 Aligned_cols=54 Identities=22% Similarity=0.626 Sum_probs=34.3
Q ss_pred CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhh---cCCccccCCCccc
Q 018059 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIP 230 (361)
Q Consensus 156 ~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~---f~pkC~~C~~~I~ 230 (361)
.....+|..|+..|. +.+.|..| ..|..|+- |.|+.||.-. -...|..|+....
T Consensus 13 ~~~~qiCqiCGD~VG----~~~~Ge~F----VAC~eC~F-------------PvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 13 NLDGQFCEICGDQIG----LTVEGDLF----VACNECGF-------------PACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CCSSCBCSSSCCBCC----BCSSSSBC----CSCSSSCC-------------CCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccCCCccccccCccc----cCCCCCEE----EeeeccCC-------------hhhHHHHHHHHhccCccccccCCccc
Confidence 345689999998885 33445444 24555543 5699998632 3347888886554
No 98
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=64.80 E-value=4.1 Score=31.31 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=27.5
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc--CCccccCCCcccc
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 231 (361)
+.|..|...+........=|+.||..|..+.+ ...|..|+..+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45555555554322222456788888876554 3578888887765
No 99
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.86 E-value=6.4 Score=28.70 Aligned_cols=45 Identities=20% Similarity=0.509 Sum_probs=26.6
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc--------CCccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--------HPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f--------~pkC~~C~~~I~~~ 232 (361)
+.|..|...+... ....=|+.||..|....+ ..+|..|+..|...
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3444444444331 122346678888876532 56899999888753
No 100
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=61.57 E-value=7.4 Score=26.07 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=17.7
Q ss_pred CCcccchhhhhhhc--CCccccCCCcccc
Q 018059 205 GNRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (361)
Q Consensus 205 dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 231 (361)
=|+.||..|..+.+ ...|..|...|.+
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45667777765432 3678888887753
No 101
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.43 E-value=8.3 Score=28.07 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=27.0
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc--------CCccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--------HPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f--------~pkC~~C~~~I~~~ 232 (361)
+.|..|...+.... ...=|+.||..|....+ ...|..|...|...
T Consensus 20 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 20 VTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 45555555444322 23456678888876532 45788888887753
No 102
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=60.09 E-value=6.8 Score=28.40 Aligned_cols=44 Identities=18% Similarity=0.433 Sum_probs=26.3
Q ss_pred cccCCCCCCCCCcceeec-CCcccchhhhhhhcC----CccccCCCcccc
Q 018059 187 FRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHH----PKCDVCQNFIPT 231 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~-dg~~YC~~CY~~~f~----pkC~~C~~~I~~ 231 (361)
+.|..|...+..- .... =|+.||..|..+.+. ..|..|...+..
T Consensus 16 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4555555554432 2233 367788888765542 479999887554
No 103
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.69 E-value=7.8 Score=26.62 Aligned_cols=44 Identities=18% Similarity=0.413 Sum_probs=24.4
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~ 232 (361)
+.|..|...+..- ....=|+.||..|... ...+|..|...+...
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPWPLG 50 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSSSCC
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEeecC
Confidence 3455555444332 2223455666666544 355788888877654
No 104
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=58.47 E-value=8.1 Score=31.69 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=16.3
Q ss_pred Ccccchhhhhhhc--CCccccCCCcccc
Q 018059 206 NRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (361)
Q Consensus 206 g~~YC~~CY~~~f--~pkC~~C~~~I~~ 231 (361)
|+.||..|..+.+ ...|..|...|..
T Consensus 72 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 72 AHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4466777755432 3468888887764
No 105
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.87 E-value=6.9 Score=28.78 Aligned_cols=43 Identities=21% Similarity=0.578 Sum_probs=26.2
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc--CCccccCCCccc
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIP 230 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~ 230 (361)
+.|..|...+.. .....=|+.||..|..+.+ ...|..|...+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345555444433 2233456778888876543 457999998876
No 106
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=57.69 E-value=6.7 Score=30.59 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=28.7
Q ss_pred CcccCCCCCCCCCcceeecCCcccchhhhhhhcC--CccccCCCcccc
Q 018059 186 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH--PKCDVCQNFIPT 231 (361)
Q Consensus 186 CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~--pkC~~C~~~I~~ 231 (361)
-+.|..|...+..-.....=|+.||..|....+. ..|..|...|..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3567777666654222225678889888765533 467777776654
No 107
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.59 E-value=6.9 Score=30.43 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=23.0
Q ss_pred ccCCCCCCCCCcceeecCCcccchhhhhhhcC-----CccccCCCcccc
Q 018059 188 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH-----PKCDVCQNFIPT 231 (361)
Q Consensus 188 ~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~-----pkC~~C~~~I~~ 231 (361)
.|..|...+... ....=|+.||..|....+. ..|..|...|..
T Consensus 23 ~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 23 ECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCcccChhhcCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 445554444321 1223466788888765443 256666666554
No 108
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=57.40 E-value=11 Score=26.43 Aligned_cols=44 Identities=16% Similarity=0.474 Sum_probs=26.5
Q ss_pred ccCCCCCCCCCcceeecCCcccchhhhhhh--cCCccccCCCcccc
Q 018059 188 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPT 231 (361)
Q Consensus 188 ~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~--f~pkC~~C~~~I~~ 231 (361)
.|..|...+........=|+.||..|..+. ....|..|...|..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 455555555432233345667788776543 34689999988864
No 109
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=56.96 E-value=6.2 Score=33.32 Aligned_cols=45 Identities=11% Similarity=0.318 Sum_probs=30.4
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc---CCccccCCCcccc
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPT 231 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~ 231 (361)
+.|..|...+........=|+.||..|..+.+ ...|..|...|..
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 56777766665532222567889999987654 3468888888754
No 110
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=56.84 E-value=7.3 Score=31.07 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=32.8
Q ss_pred ccCCCCCCCCCcceeecCCcccchhhhhh---hcCCccccCCCcccc
Q 018059 188 RCHSCNLPITDVEFSMSGNRPYHKHCYKE---QHHPKCDVCQNFIPT 231 (361)
Q Consensus 188 ~C~~C~~~L~~~~f~~~dg~~YC~~CY~~---~f~pkC~~C~~~I~~ 231 (361)
.|..|+.|+....-...=+..+|..|+.. +-...|..|..+|..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 37778888876554455567899999875 345689999999984
No 111
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.37 E-value=5.3 Score=28.40 Aligned_cols=44 Identities=14% Similarity=0.394 Sum_probs=27.5
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhcC--CccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH--PKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~--pkC~~C~~~I~~~ 232 (361)
+.|..|...+.. ....=|+.||..|..+.+. ..|..|...|...
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 445555555444 3334566788888765433 5788888888754
No 112
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.14 E-value=10 Score=27.12 Aligned_cols=28 Identities=21% Similarity=0.539 Sum_probs=19.4
Q ss_pred cCCcccchhhhhhhc--CCccccCCCcccc
Q 018059 204 SGNRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (361)
Q Consensus 204 ~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 231 (361)
.=|+.||..|..+.+ ...|..|...|..
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 32 PCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 345677888876533 3579999988874
No 113
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=56.04 E-value=6.8 Score=30.89 Aligned_cols=43 Identities=16% Similarity=0.478 Sum_probs=23.1
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc---CCccccCCCccc
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIP 230 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~ 230 (361)
|.|..|...+.. .....=|+.||..|....+ ...|..|...|.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 455555554433 2222456677888865543 235666666554
No 114
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=52.92 E-value=7.1 Score=30.21 Aligned_cols=46 Identities=17% Similarity=0.436 Sum_probs=28.4
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc--C-CccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--H-PKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f--~-pkC~~C~~~I~~~ 232 (361)
+.|..|...+..-.....=|+.||..|..+.+ . ..|..|...+...
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 45556655554322213456788998876543 2 5799999888653
No 115
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=52.74 E-value=6.2 Score=28.59 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=16.8
Q ss_pred CCcccchhhhhhhc---------CCccccCCCcccc
Q 018059 205 GNRPYHKHCYKEQH---------HPKCDVCQNFIPT 231 (361)
Q Consensus 205 dg~~YC~~CY~~~f---------~pkC~~C~~~I~~ 231 (361)
=|+.||..|..+.+ ..+|..|...+..
T Consensus 30 CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 30 CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 45566777765432 3467778777764
No 116
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=51.18 E-value=15 Score=28.60 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=34.5
Q ss_pred CCCcccCCCCCCCCCcceeecCCcccchhhhhhhc--CCccccCCCccccC
Q 018059 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 232 (361)
Q Consensus 184 ~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~~ 232 (361)
+.-|.|..|...+.+ ......|+.||..|-.+.+ ...|..|+.++...
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 667888888877766 3444588999998865543 45788888877653
No 117
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=51.16 E-value=9.5 Score=30.50 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=19.0
Q ss_pred CCcccchhhhhhhc---CCccccCCCcccc
Q 018059 205 GNRPYHKHCYKEQH---HPKCDVCQNFIPT 231 (361)
Q Consensus 205 dg~~YC~~CY~~~f---~pkC~~C~~~I~~ 231 (361)
=|+.||..|....+ ...|..|...|..
T Consensus 70 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 70 CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 35568888876544 2389999988875
No 118
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.08 E-value=9.8 Score=28.06 Aligned_cols=29 Identities=10% Similarity=0.393 Sum_probs=20.7
Q ss_pred cCCcccchhhhhhhcC-----CccccCCCccccC
Q 018059 204 SGNRPYHKHCYKEQHH-----PKCDVCQNFIPTN 232 (361)
Q Consensus 204 ~dg~~YC~~CY~~~f~-----pkC~~C~~~I~~~ 232 (361)
.=|+.||..|..+.+. .+|..|...+...
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 36 HCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3466788888765532 5799999887654
No 119
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.86 E-value=11 Score=28.11 Aligned_cols=50 Identities=24% Similarity=0.696 Sum_probs=30.4
Q ss_pred CCCCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcC----CccccCCCcccc
Q 018059 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH----PKCDVCQNFIPT 231 (361)
Q Consensus 156 ~~~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~----pkC~~C~~~I~~ 231 (361)
......|+.|...|..+ .+|..|+ ..|+..|..+-|. ..|..|+..+..
T Consensus 12 ~~~i~~C~IC~~~i~~g--------------~~C~~C~-------------h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQG--------------QSCETCG-------------IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSS--------------EECSSSC-------------CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccC--------------CccCCCC-------------chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 44667899999888532 2444443 2344455443322 569999988775
Q ss_pred C
Q 018059 232 N 232 (361)
Q Consensus 232 ~ 232 (361)
.
T Consensus 65 ~ 65 (74)
T 2ct0_A 65 E 65 (74)
T ss_dssp C
T ss_pred C
Confidence 4
No 120
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=50.85 E-value=12 Score=27.98 Aligned_cols=46 Identities=17% Similarity=0.456 Sum_probs=29.7
Q ss_pred cccCCCCCCCCCc--ceee-cCCcccchhhhhhhc---CCccccCCCccccC
Q 018059 187 FRCHSCNLPITDV--EFSM-SGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~--~f~~-~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 232 (361)
+.|..|-.++... .+.. .=|+.+|..|+.+.. ...|..|.+.+...
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4566666655321 2221 257788999987664 45899999988764
No 121
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.57 E-value=10 Score=26.52 Aligned_cols=46 Identities=11% Similarity=0.268 Sum_probs=30.6
Q ss_pred cccCCCCC-CCCCcc---eeecCCcccchhhhhhhc---CCccccCCCccccC
Q 018059 187 FRCHSCNL-PITDVE---FSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~-~L~~~~---f~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 232 (361)
+.|..|.. .+.... ....=|+.||..|..+.+ ..+|..|+..|...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 45667766 333321 234567889999987663 35799999999764
No 122
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=49.37 E-value=16 Score=26.53 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=26.2
Q ss_pred ccCCCCCCCCCcceeecCCcc-cchhhhhhhcCCccccCCCcccc
Q 018059 188 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (361)
Q Consensus 188 ~C~~C~~~L~~~~f~~~dg~~-YC~~CY~~~f~pkC~~C~~~I~~ 231 (361)
.|..|...+....+ ..=|+. +|..|.... .+|..|...|..
T Consensus 26 ~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 26 LCKICMDRNIAIVF-VPCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp BCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCEEE-cCCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 44555544433222 234556 888887665 789999998875
No 123
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=48.69 E-value=7.4 Score=29.25 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=27.5
Q ss_pred CcccCCCCCCCCCcceeec-CCcccchhhhhhhc----CCccccCCCccc
Q 018059 186 CFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQH----HPKCDVCQNFIP 230 (361)
Q Consensus 186 CF~C~~C~~~L~~~~f~~~-dg~~YC~~CY~~~f----~pkC~~C~~~I~ 230 (361)
-|.|..|...+.. ..... =|+.||..|....+ ...|..|...+.
T Consensus 13 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3566666655543 22333 37789999976554 247888888763
No 124
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=48.61 E-value=63 Score=25.25 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCcCccCCCccccCceEEe--CCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCccccCCccc
Q 018059 159 YRICAGCNTEIGHGRYLSC--MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGL 236 (361)
Q Consensus 159 ~~~C~~C~~~I~~ge~l~a--~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~~~ 236 (361)
...|..|+..-.....|.. =++.||+.|..-.. .++ ..+.-+|..|. .|.+|++.-... .
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~~-------~~~~W~C~~C~------~C~~C~~~~~~~---~ 68 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TPL-------KRAGWQCPECK------VCQNCKQSGEDS---K 68 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CTT-------TSTTCCCTTTC------CCTTTCCCSCCT---T
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--ccc-------cccCccCCcCC------cccccCccCCCC---C
Confidence 4578888765321233443 36889998875432 111 24567787773 688898765432 1
Q ss_pred eEeeccccccccCCCCcccCCCCccCCCCCcCCCCCceEEccCCCccChhhhhh
Q 018059 237 IEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (361)
Q Consensus 237 i~~~~~pfW~~~yCp~h~H~~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~ 290 (361)
+.. -..|+..||..|..- .+ . .+..+.++|..|...
T Consensus 69 ll~-------Cd~C~~~yH~~Cl~p-----pl--~----~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 69 MLV-------CDTCDKGYHTFCLQP-----VM--K----SVPTNGWKCKNCRIC 104 (111)
T ss_dssp EEE-------CSSSCCEEEGGGSSS-----CC--S----SCCSSCCCCHHHHCC
T ss_pred eeE-------CCCCCcHHhHHhcCC-----cc--c----cCCCCCcCCcCCcCc
Confidence 221 124555667665531 11 1 123578999999654
No 125
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=47.81 E-value=17 Score=27.32 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCCcccCCCCCCCCCcceeecCCcccchhhhhhhc--CCccccCCCcccc
Q 018059 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (361)
Q Consensus 184 ~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 231 (361)
+.-|.|..|...+.+ ......|+.||..|-.+.+ ...|..|+.++..
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456888888877765 3444578899998865433 4678888888765
No 126
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=46.99 E-value=18 Score=28.07 Aligned_cols=47 Identities=4% Similarity=-0.041 Sum_probs=32.1
Q ss_pred CCCcccCCCCCCCCCcceeecCC-cccchhhhhhhc--CCccccCCCcccc
Q 018059 184 PECFRCHSCNLPITDVEFSMSGN-RPYHKHCYKEQH--HPKCDVCQNFIPT 231 (361)
Q Consensus 184 ~~CF~C~~C~~~L~~~~f~~~dg-~~YC~~CY~~~f--~pkC~~C~~~I~~ 231 (361)
+.-|.|..|...+.+- .....| +.||..|-.+.+ ...|..|+.++..
T Consensus 20 p~~~~CpI~~~~m~dP-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCC-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4567888887776653 334455 899998865543 4578888887765
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=46.38 E-value=14 Score=33.14 Aligned_cols=46 Identities=7% Similarity=-0.020 Sum_probs=27.0
Q ss_pred CcccCCCCCCCCCcceeecCCcccchhhhhhhc---CCccccCCCccccC
Q 018059 186 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (361)
Q Consensus 186 CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 232 (361)
-|.|..|...+.+ ......|+.||..|-.+.+ +..|..|+.++...
T Consensus 208 ~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 208 YLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp TTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred ccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 4555555555443 2233457778887755432 33488998888653
No 128
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=45.78 E-value=7.1 Score=29.93 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=8.0
Q ss_pred ccccCCCccccC
Q 018059 221 KCDVCQNFIPTN 232 (361)
Q Consensus 221 kC~~C~~~I~~~ 232 (361)
.|..|+..|+-.
T Consensus 53 FC~~C~~LiSkk 64 (81)
T 2jrp_A 53 FCQNGHGLISKK 64 (81)
T ss_dssp CCTTTTCCCCTT
T ss_pred eeccCCCEeecc
Confidence 567777777654
No 129
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=45.31 E-value=16 Score=28.75 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=31.8
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc---CCccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 232 (361)
|.|..|...+.. .....-|+.||..|..+.+ ...|..|...|...
T Consensus 24 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 567777666654 2334567889999986543 45899999998864
No 130
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=45.02 E-value=15 Score=29.01 Aligned_cols=71 Identities=18% Similarity=0.486 Sum_probs=46.5
Q ss_pred CCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCc------ceeecCCcccchhhhhhh--cCCccccCCCccc
Q 018059 159 YRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDV------EFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIP 230 (361)
Q Consensus 159 ~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~------~f~~~dg~~YC~~CY~~~--f~pkC~~C~~~I~ 230 (361)
...|+.|+..+........ .....=+.|..|...+... .....=|..||..|..+. ....|..|...|.
T Consensus 48 ~~~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 48 ANTCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp CSBCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 3478899988864444321 1234456788887776432 133456888999997653 3468999999888
Q ss_pred cC
Q 018059 231 TN 232 (361)
Q Consensus 231 ~~ 232 (361)
.+
T Consensus 125 ~~ 126 (133)
T 4ap4_A 125 HK 126 (133)
T ss_dssp GG
T ss_pred hh
Confidence 64
No 131
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=43.90 E-value=13 Score=31.06 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=18.0
Q ss_pred CcccchhhhhhhcC---CccccCCCccccC
Q 018059 206 NRPYHKHCYKEQHH---PKCDVCQNFIPTN 232 (361)
Q Consensus 206 g~~YC~~CY~~~f~---pkC~~C~~~I~~~ 232 (361)
|..||..|....+. ..|..|...|...
T Consensus 97 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 97 FHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp SCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45677777655432 3788888887753
No 132
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=43.53 E-value=16 Score=30.75 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=32.1
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc---CCccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 232 (361)
|.|..|...+..- +...-|..||..|..+.+ ..+|..|...|...
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 5677777766543 334678889999987654 34899999888764
No 133
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.11 E-value=9.3 Score=26.68 Aligned_cols=27 Identities=15% Similarity=0.501 Sum_probs=18.5
Q ss_pred cCCcccchhhhhhhc--CCccccCCCccc
Q 018059 204 SGNRPYHKHCYKEQH--HPKCDVCQNFIP 230 (361)
Q Consensus 204 ~dg~~YC~~CY~~~f--~pkC~~C~~~I~ 230 (361)
.=|+.||..|..+.+ ...|..|...|.
T Consensus 39 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 39 ECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 345677888876543 457888888775
No 134
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=42.33 E-value=16 Score=28.99 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=29.7
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc---CCccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 232 (361)
|.|..|...+... ....=|..||..|..+.+ ...|..|...|...
T Consensus 19 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4566666555432 333467788999986543 24899999988764
No 135
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.08 E-value=22 Score=25.56 Aligned_cols=25 Identities=24% Similarity=0.658 Sum_probs=14.2
Q ss_pred ccchhhhhhh--cCCccccCCCccccC
Q 018059 208 PYHKHCYKEQ--HHPKCDVCQNFIPTN 232 (361)
Q Consensus 208 ~YC~~CY~~~--f~pkC~~C~~~I~~~ 232 (361)
.||..|..+. ....|..|...|...
T Consensus 39 ~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 39 LFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp EEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred eecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3444444332 234788888887754
No 136
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=41.33 E-value=9.6 Score=34.74 Aligned_cols=48 Identities=23% Similarity=0.719 Sum_probs=30.7
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhc----CCccccCCCccccC
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH----HPKCDVCQNFIPTN 232 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f----~pkC~~C~~~I~~~ 232 (361)
....|..|+..|.. ..+|..|+. .++..|+.+.+ .++|..|+...+..
T Consensus 179 ~i~~C~iC~~iv~~--------------g~~C~~C~~-------------~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQ--------------GQSCETCGI-------------RMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSS--------------CEECSSSCC-------------EECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhC--------------CcccCccCh-------------HHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 46789999888852 244554542 34455554433 46899999988764
No 137
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=41.17 E-value=11 Score=25.87 Aligned_cols=46 Identities=15% Similarity=0.427 Sum_probs=29.8
Q ss_pred cccCCCCCCCCCc------ceeecCCcccchhhhhhhc--CCccccCCCccccC
Q 018059 187 FRCHSCNLPITDV------EFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~------~f~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~~ 232 (361)
+.|..|...+... .....=|+.||..|..+.+ ...|..|...|...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 4566666555321 1334567788988876543 46899999988764
No 138
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=40.26 E-value=17 Score=25.68 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=22.6
Q ss_pred ccCCCCCCCCCcceeecCCcccc-hhhhhh
Q 018059 188 RCHSCNLPITDVEFSMSGNRPYH-KHCYKE 216 (361)
Q Consensus 188 ~C~~C~~~L~~~~f~~~dg~~YC-~~CY~~ 216 (361)
.|..|+..++...-+.++|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 46788888877777788999998 777553
No 139
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.64 E-value=23 Score=25.59 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=26.8
Q ss_pred ccCCCCCCCCCcceeecCCcc-cchhhhhhhcCCccccCCCcccc
Q 018059 188 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (361)
Q Consensus 188 ~C~~C~~~L~~~~f~~~dg~~-YC~~CY~~~f~pkC~~C~~~I~~ 231 (361)
.|..|...+....+ ..=|+. ||..|... ..+|..|...|..
T Consensus 27 ~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~--~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNIAIVF-VPCGHLVTCKQCAEA--VDKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCCCBCC-SSSCCCCBCHHHHHH--CSBCTTTCCBCCC
T ss_pred CCCcCCCCCCCEEE-ecCCCHHHHHHHhhC--CCCCccCCceecC
Confidence 45555554443222 234566 89999865 3799999999975
No 140
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.04 E-value=26 Score=23.41 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=8.5
Q ss_pred CCcccchhhhhhh
Q 018059 205 GNRPYHKHCYKEQ 217 (361)
Q Consensus 205 dg~~YC~~CY~~~ 217 (361)
=|+.||..|..+.
T Consensus 33 CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 33 CGHNFCKACITRW 45 (58)
T ss_dssp SCCCCCHHHHHHH
T ss_pred CCCccCHHHHHHH
Confidence 4566777776654
No 141
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=35.18 E-value=8.8 Score=31.91 Aligned_cols=43 Identities=16% Similarity=0.416 Sum_probs=30.8
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhcC---CccccCCCccc
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH---PKCDVCQNFIP 230 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~---pkC~~C~~~I~ 230 (361)
|.|..|...+..- +...-|..||..|..+.+. ..|..|...|.
T Consensus 32 ~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 32 YLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 6677777766543 3446788899999877543 48999988764
No 142
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=34.58 E-value=29 Score=24.09 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=28.0
Q ss_pred CCcCccCCCccccCceEEeCCceecCCCc--------ccCCCCCCCCC
Q 018059 159 YRICAGCNTEIGHGRYLSCMEAFWHPECF--------RCHSCNLPITD 198 (361)
Q Consensus 159 ~~~C~~C~~~I~~ge~l~a~gk~wH~~CF--------~C~~C~~~L~~ 198 (361)
...|.-|...+.....+..-|..||..|+ .|..|+.++..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45688888877433344445777888887 48889888764
No 143
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=33.85 E-value=15 Score=25.86 Aligned_cols=29 Identities=14% Similarity=0.508 Sum_probs=20.5
Q ss_pred cCCcccchhhhhhh--cCCccccCCCccccC
Q 018059 204 SGNRPYHKHCYKEQ--HHPKCDVCQNFIPTN 232 (361)
Q Consensus 204 ~dg~~YC~~CY~~~--f~pkC~~C~~~I~~~ 232 (361)
.=|+.||..|..+. ....|..|...+...
T Consensus 34 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 34 ECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 44567888887643 346899999888754
No 144
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=33.55 E-value=26 Score=30.52 Aligned_cols=47 Identities=6% Similarity=-0.002 Sum_probs=29.2
Q ss_pred CCcccCCCCCCCCCcceeecCCcccchhhhhhh---cCCccccCCCccccC
Q 018059 185 ECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTN 232 (361)
Q Consensus 185 ~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~---f~pkC~~C~~~I~~~ 232 (361)
.-|.|..|...+.+ .+....|+.||..|-... .+..|..|+.++...
T Consensus 105 ~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 34556666555544 333356788888885443 234699999887653
No 145
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=32.95 E-value=12 Score=33.19 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=9.2
Q ss_pred cCCcccchhhhhh
Q 018059 204 SGNRPYHKHCYKE 216 (361)
Q Consensus 204 ~dg~~YC~~CY~~ 216 (361)
.+|+++|..|+.+
T Consensus 190 ~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 190 LNGKPVCKPDYYG 202 (204)
T ss_dssp ETTEEECHHHHHC
T ss_pred eCCcEEChhhhcc
Confidence 4677788888754
No 146
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=32.41 E-value=30 Score=26.52 Aligned_cols=33 Identities=24% Similarity=0.631 Sum_probs=25.7
Q ss_pred CCCcCccCCCccccCceEEeCCceecCCCcccC
Q 018059 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCH 190 (361)
Q Consensus 158 ~~~~C~~C~~~I~~ge~l~a~gk~wH~~CF~C~ 190 (361)
..-.|.-|.+.+.+..++.+-...-|+-||-|+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 456788888888777888887777888888775
No 147
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.94 E-value=20 Score=24.69 Aligned_cols=31 Identities=10% Similarity=0.274 Sum_probs=17.6
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhhc
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH 218 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f 218 (361)
+.|..|...+.. .....=|+.||..|..+.+
T Consensus 21 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CBCTTTCSBCSS-CEECTTSSEECHHHHHHHH
T ss_pred CCCCcCCchhCC-eEEeCCCCcchHHHHHHHH
Confidence 455555554443 2223456778888876544
No 148
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=30.35 E-value=1.7e+02 Score=23.10 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=30.9
Q ss_pred CCcCccCCCccccCceEEeC----CceecCCCcccCCCCCCCCCcceeecCCcccchhhhhhhcCCccccCCCcc
Q 018059 159 YRICAGCNTEIGHGRYLSCM----EAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI 229 (361)
Q Consensus 159 ~~~C~~C~~~I~~ge~l~a~----gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~pkC~~C~~~I 229 (361)
...|..|+. .|++|... .+.||..|.. |.. .-.|.-||..| .|..|++..
T Consensus 15 ~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c-------~C~~C~k~~ 68 (107)
T 4gne_A 15 EDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH-------QCDECSSAA 68 (107)
T ss_dssp CSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG-------BCTTTCSBC
T ss_pred CCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC-------CCCcCCCCC
Confidence 456888873 35666543 3678877763 222 12466788877 678887654
No 149
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.40 E-value=53 Score=23.45 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=21.7
Q ss_pred CccCCCCCcCCCCCceEEccCCCccChhhhhhhccCCCCC
Q 018059 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHEC 298 (361)
Q Consensus 259 f~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~d~~~c 298 (361)
+.|..|...+..+.....+.=|+.+|..|....+.....|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~C 55 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSC 55 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcC
Confidence 4566665555444444444556667777766554433334
No 150
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=25.99 E-value=28 Score=23.99 Aligned_cols=10 Identities=50% Similarity=0.836 Sum_probs=8.3
Q ss_pred HHHHHHHhhh
Q 018059 44 EIDRAIALSL 53 (361)
Q Consensus 44 ~~~~~~~~~~ 53 (361)
|+-|||-||+
T Consensus 29 dLrrAiqLSm 38 (52)
T 2klz_A 29 DLRRAIQLSM 38 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7888888886
No 151
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.83 E-value=32 Score=26.13 Aligned_cols=43 Identities=12% Similarity=0.259 Sum_probs=29.2
Q ss_pred CCcccCCCCCCCCCcceee-cCCcccchhhhhhhc--------CCcccc--CCCc
Q 018059 185 ECFRCHSCNLPITDVEFSM-SGNRPYHKHCYKEQH--------HPKCDV--CQNF 228 (361)
Q Consensus 185 ~CF~C~~C~~~L~~~~f~~-~dg~~YC~~CY~~~f--------~pkC~~--C~~~ 228 (361)
.=|.|..|...+.+ .... ..|+.||+.|-.+.+ ...|.. |...
T Consensus 6 ~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34788888877765 4444 489999999865433 236777 6654
No 152
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.16 E-value=38 Score=28.70 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=10.8
Q ss_pred HhhhHHHHHHHHHHHH
Q 018059 95 IAQQEEDERRAKAQQE 110 (361)
Q Consensus 95 ~~~~~E~~~l~~~q~e 110 (361)
.+.+.|++++.+|..+
T Consensus 34 ~l~~~EeeRi~kLk~~ 49 (153)
T 2zet_C 34 DLRRREEERLQGLKGK 49 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4556677777777664
No 153
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=25.13 E-value=9.6 Score=37.95 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=10.6
Q ss_pred CCcCccCCCccccCce
Q 018059 159 YRICAGCNTEIGHGRY 174 (361)
Q Consensus 159 ~~~C~~C~~~I~~ge~ 174 (361)
.-.|-.|++.+...+.
T Consensus 400 ~~~~~~c~~~l~~~~~ 415 (523)
T 3py7_A 400 GLDCLWCREPLTEVDA 415 (523)
T ss_dssp TCEETTTCCBCCHHHH
T ss_pred CcEEEecCCcCCHHHH
Confidence 3568888888754443
No 154
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.97 E-value=19 Score=27.36 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=8.4
Q ss_pred CCCccCCCCCcC
Q 018059 257 GTPRCCSCERME 268 (361)
Q Consensus 257 ~Cf~C~~C~r~l 268 (361)
.-|.|..|++.+
T Consensus 79 ~~~~C~~C~k~f 90 (115)
T 2dmi_A 79 KVLKCMYCGHSF 90 (115)
T ss_dssp SSCBCSSSCCBC
T ss_pred cceECCCCCCcc
Confidence 447788888765
No 155
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=24.96 E-value=79 Score=20.67 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=21.1
Q ss_pred CccCCCCCcCCCCCceEEcc-CCCccChhhhhhhccCCCCC
Q 018059 259 PRCCSCERMEPRDTKYLSLD-DGRKLCLECLDSAIMDTHEC 298 (361)
Q Consensus 259 f~C~~C~r~l~~g~~f~~~~-dg~~~C~~C~~~~v~d~~~c 298 (361)
..|..|...+..+.....+. =|..+|..|....+.....|
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~C 46 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTC 46 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcC
Confidence 34555655554444444443 46677777776554433333
No 156
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=24.68 E-value=47 Score=24.44 Aligned_cols=41 Identities=17% Similarity=0.425 Sum_probs=26.4
Q ss_pred ccCCCCCCCCCcceeecCCcc-cchhhhhhhcCCccccCCCcccc
Q 018059 188 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (361)
Q Consensus 188 ~C~~C~~~L~~~~f~~~dg~~-YC~~CY~~~f~pkC~~C~~~I~~ 231 (361)
.|..|........+ ..=|+. +|..|.... ..|..|...|..
T Consensus 20 ~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEINSTF-CPCGHTVCCESCAAQL--QSCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBCCEEE-ETTCBCCBCHHHHTTC--SBCTTTCCBCCE
T ss_pred EeEEeCcccCcEEE-ECCCCHHHHHHHHHhc--CcCCCCCchhhC
Confidence 45555544443222 334555 888887754 499999999986
No 157
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=24.27 E-value=21 Score=28.43 Aligned_cols=19 Identities=26% Similarity=0.744 Sum_probs=14.2
Q ss_pred hhhhcCCccccCCCccccC
Q 018059 214 YKEQHHPKCDVCQNFIPTN 232 (361)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~ 232 (361)
|.+....+|..|+..|.-.
T Consensus 20 yAkS~Ra~Ck~C~~kI~Kg 38 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKD 38 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTT
T ss_pred EeCCCCCcchhhCCccCCC
Confidence 4455566899999999865
No 158
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=24.17 E-value=17 Score=27.22 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=5.5
Q ss_pred CcCccCCCcc
Q 018059 160 RICAGCNTEI 169 (361)
Q Consensus 160 ~~C~~C~~~I 169 (361)
..|..|++..
T Consensus 18 ~~C~~C~~~f 27 (106)
T 2ee8_A 18 FICKFCGRHF 27 (106)
T ss_dssp CBCSSSCCBC
T ss_pred eECCCCCCcc
Confidence 4566665554
No 159
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.69 E-value=12 Score=27.50 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=25.9
Q ss_pred CccCCCCCcCCCCCceEEccCCCccChhhhhhhccCCCCCchhhHHHHHHHHhcCccccccccccccch
Q 018059 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVER 327 (361)
Q Consensus 259 f~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~d~~~cq~~~~~i~~f~egl~mk~~~~~P~llv~~ 327 (361)
..|-.|+..| .|. ...|.++|..|.. -.+|...+|.||.+.
T Consensus 9 L~CP~ck~~L----~~~-~~~~~LiC~~cg~-----------------------~YPI~dGIPvmL~~E 49 (68)
T 2hf1_A 9 LVCPLCKGPL----VFD-KSKDELICKGDRL-----------------------AFPIKDGIPMMLESE 49 (68)
T ss_dssp CBCTTTCCBC----EEE-TTTTEEEETTTTE-----------------------EEEEETTEECCCGGG
T ss_pred eECCCCCCcC----eEe-CCCCEEEcCCCCc-----------------------EecCCCCeeeeChhh
Confidence 4566666544 222 2357778877732 246778999999773
No 160
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.44 E-value=57 Score=23.24 Aligned_cols=25 Identities=20% Similarity=0.598 Sum_probs=18.8
Q ss_pred CCcc-cchhhhhhhcCCccccCCCcccc
Q 018059 205 GNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (361)
Q Consensus 205 dg~~-YC~~CY~~~f~pkC~~C~~~I~~ 231 (361)
=|+. +|..|... ..+|..|...|..
T Consensus 33 CgH~~~C~~C~~~--~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 33 CRHTCLCDGCVKY--FQQCPMCRQFVQE 58 (68)
T ss_dssp TTBCCSCTTHHHH--CSSCTTTCCCCCC
T ss_pred CCChhhhHHHHhc--CCCCCCCCcchhc
Confidence 3445 78888774 3689999999985
No 161
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.40 E-value=10 Score=27.84 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=26.9
Q ss_pred CCccCCCCCcCCCCCceEEccCCCccChhhhhhhccCCCCCchhhHHHHHHHHhcCccccccccccccch
Q 018059 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVER 327 (361)
Q Consensus 258 Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~d~~~cq~~~~~i~~f~egl~mk~~~~~P~llv~~ 327 (361)
=..|-.|+..| .|. ...|.++|..|.. -.+|...+|.||.+.
T Consensus 10 iL~CP~ck~~L----~~~-~~~g~LvC~~c~~-----------------------~YPI~dGIPvmL~~E 51 (67)
T 2jny_A 10 VLACPKDKGPL----RYL-ESEQLLVNERLNL-----------------------AYRIDDGIPVLLIDE 51 (67)
T ss_dssp CCBCTTTCCBC----EEE-TTTTEEEETTTTE-----------------------EEEEETTEECCCSSC
T ss_pred HhCCCCCCCcC----eEe-CCCCEEEcCCCCc-----------------------cccCCCCEeeeChhH
Confidence 35666777654 232 2457788887732 247778999999773
No 162
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.73 E-value=43 Score=31.15 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=30.6
Q ss_pred CCcccCCCCCCCCCcceeecCCcccchhhhhhhcC----Ccccc--CCCcccc
Q 018059 185 ECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH----PKCDV--CQNFIPT 231 (361)
Q Consensus 185 ~CF~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~f~----pkC~~--C~~~I~~ 231 (361)
.=|+|..|...+..-.....-|+.||+.|..+.+. ..|.+ |.+.+..
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34788888888866333335688999998766543 14666 6665543
No 163
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=22.48 E-value=33 Score=25.21 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=11.8
Q ss_pred CCcccchhhhhhhc
Q 018059 205 GNRPYHKHCYKEQH 218 (361)
Q Consensus 205 dg~~YC~~CY~~~f 218 (361)
+|.+||..||.+..
T Consensus 26 dgDLYC~rC~rE~H 39 (67)
T 2d8v_A 26 DGDLYCARCFREGH 39 (67)
T ss_dssp TSEEECSSHHHHHT
T ss_pred CCceehHHHHHHHc
Confidence 56799999999864
No 164
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=22.39 E-value=1.6e+02 Score=23.52 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=23.9
Q ss_pred cCccCCCccccCceEEeCCceecCCCc--------ccCCCCCCCCCc
Q 018059 161 ICAGCNTEIGHGRYLSCMEAFWHPECF--------RCHSCNLPITDV 199 (361)
Q Consensus 161 ~C~~C~~~I~~ge~l~a~gk~wH~~CF--------~C~~C~~~L~~~ 199 (361)
.|.-|...+. ..++..-|..||..|+ .|..|+.++...
T Consensus 55 ~C~iC~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 55 QCIICSEYFI-EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp BCTTTCSBCS-SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCcccCcccC-CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4777776653 3344445667776664 588888887653
No 165
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=22.35 E-value=15 Score=27.08 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=27.2
Q ss_pred CCCccCCCCCcCCCCCceEEccCCCccChhhhhhhccCCCCCchhhHHHHHHHHhcCccccccccccccch
Q 018059 257 GTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVER 327 (361)
Q Consensus 257 ~Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~~v~d~~~cq~~~~~i~~f~egl~mk~~~~~P~llv~~ 327 (361)
.-..|-.|+..| .|. ...|.++|..|.. -.+|...+|.||.+.
T Consensus 7 ~iL~CP~ck~~L----~~~-~~~~~LiC~~cg~-----------------------~YPI~dGIPvmL~~E 49 (68)
T 2jr6_A 7 DILVCPVTKGRL----EYH-QDKQELWSRQAKL-----------------------AYPIKDGIPYMLENE 49 (68)
T ss_dssp CCCBCSSSCCBC----EEE-TTTTEEEETTTTE-----------------------EEEEETTEECCCTTT
T ss_pred hheECCCCCCcC----eEe-CCCCEEEcCCCCc-----------------------EecCCCCeeeeChhh
Confidence 335677777655 222 2357777877732 246778999999773
No 166
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=22.34 E-value=60 Score=31.07 Aligned_cols=42 Identities=21% Similarity=0.461 Sum_probs=27.4
Q ss_pred cccCCCCCCCCCcceeecCCcc-cchhhhhhhcCCccccCCCcccc
Q 018059 187 FRCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~-YC~~CY~~~f~pkC~~C~~~I~~ 231 (361)
+.|..|...+....+ ..=|+. +|..|.... ..|..|...|..
T Consensus 296 ~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~--~~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVF-IPCGHLVVCQECAPSL--RKCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBCCEEE-ETTCCEEECTTTGGGC--SBCTTTCCBCCE
T ss_pred CCCCccCCcCCceEE-cCCCChhHhHHHHhcC--CcCCCCCCCccC
Confidence 455666555543222 244556 888887654 789999999875
No 167
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=21.93 E-value=32 Score=27.75 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.5
Q ss_pred CCCCCcCccCCCccccCc
Q 018059 156 FSGYRICAGCNTEIGHGR 173 (361)
Q Consensus 156 ~~~~~~C~~C~~~I~~ge 173 (361)
..+...|.+|+..|..++
T Consensus 17 KS~RA~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 17 KSSRSSCKTCKSVINKEN 34 (114)
T ss_dssp SCSCCBCSSSCCBCCSSS
T ss_pred CCCCCCchhhCCccCCCC
Confidence 556789999999997664
No 168
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=21.90 E-value=19 Score=31.95 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=22.0
Q ss_pred CCccCCCCCcCCCCCceEEccCCCccChhhhhh
Q 018059 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (361)
Q Consensus 258 Cf~C~~C~r~l~~g~~f~~~~dg~~~C~~C~~~ 290 (361)
-..|..|+....... ..+.+|+.+|..|+..
T Consensus 172 ~~~C~~CGE~~~~~~--~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEAD--AKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGG--CEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcc--eeeeCCcEEChhhhcc
Confidence 456999998663322 2335799999999865
No 169
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=21.46 E-value=51 Score=22.23 Aligned_cols=17 Identities=18% Similarity=0.503 Sum_probs=13.6
Q ss_pred eeecCCcccchhhhhhh
Q 018059 201 FSMSGNRPYHKHCYKEQ 217 (361)
Q Consensus 201 f~~~dg~~YC~~CY~~~ 217 (361)
|...+-+|||..||.++
T Consensus 22 ~mSVnTQP~CHEC~err 38 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERR 38 (49)
T ss_dssp BCCTTTTTSCHHHHHHH
T ss_pred EEEecCccchHHHHHHH
Confidence 34468899999999865
No 170
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=21.11 E-value=61 Score=22.71 Aligned_cols=46 Identities=4% Similarity=-0.009 Sum_probs=33.8
Q ss_pred CcccCCCCCCCCCcceee-cCCcccchhhhhhhc--CCccccCCCccccC
Q 018059 186 CFRCHSCNLPITDVEFSM-SGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 232 (361)
Q Consensus 186 CF~C~~C~~~L~~~~f~~-~dg~~YC~~CY~~~f--~pkC~~C~~~I~~~ 232 (361)
-|.|..+...+.+- ... ..|..|++.+-.+.+ ..+|..+++++...
T Consensus 3 ~~~CpIs~~~m~dP-V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRP-VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSE-EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCC-EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 37888888888763 444 789999998876543 24699999888764
No 171
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=20.97 E-value=73 Score=31.14 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=31.0
Q ss_pred cccCCCCCCCCCcceeecCCcccchhhhhhh---cCCccccCCCccccC
Q 018059 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTN 232 (361)
Q Consensus 187 F~C~~C~~~L~~~~f~~~dg~~YC~~CY~~~---f~pkC~~C~~~I~~~ 232 (361)
..|..|-..+.. .....=|+.||..|.... ....|..|...|...
T Consensus 333 ~~C~ICle~~~~-pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKD-VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCC-EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCCC-eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 456677655543 233456778899997654 357899999999863
No 172
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=20.42 E-value=11 Score=32.38 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=24.2
Q ss_pred cCCCCccCCCCCcCCC----CCceEEcc--CCCccChhhhhhhccCC--CCCchh
Q 018059 255 RDGTPRCCSCERMEPR----DTKYLSLD--DGRKLCLECLDSAIMDT--HECQPL 301 (361)
Q Consensus 255 H~~Cf~C~~C~r~l~~----g~~f~~~~--dg~~~C~~C~~~~v~d~--~~cq~~ 301 (361)
|..=+.|..|..-+-. +..+. +. ....+|..|+.-...++ ..|..+
T Consensus 102 H~~~~~C~~CH~~v~~~~~~~~~~t-m~~~~~gk~Cg~CH~gk~Af~~~~~C~~C 155 (158)
T 3oue_A 102 HLSMFKCADCHTKVFKYRKGSAPAT-MADMEKGKSCGVCHNGKDAFSVADDCVKC 155 (158)
T ss_dssp HHTTCCGGGTBTTTBCSSTTSSCCC-HHHHHTTCGGGGTBTTTSBCCSSSCGGGT
T ss_pred hCCCCChhhhccchhhcccCCCCcc-hhhhhccChhHhhcCCCccCCCcccHHHH
Confidence 5433889999974411 11221 11 12259999996333332 366554
Done!