BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018060
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 119/250 (47%), Gaps = 29/250 (11%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
KA+IL GG GTRL T+ PKP+VE KP++ H ++ G+ + ++ Y+ V+
Sbjct: 4 KAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 62 NFLKEFEAKLGIKIICSQET---------EPLG-----------TAGPLALARDKLIDDT 101
+ + + E EP T G L + + DD
Sbjct: 64 EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD- 122
Query: 102 GEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFV 161
E F D +++ I+FHKAHG +A++ T P ++G + ++ G+V F
Sbjct: 123 -EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRFGALDIQ--AGQVRSFQ 177
Query: 162 EKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 221
EKPK G IN G ++LNP+V+D I+ T+ E+E +A +G+L A PGFW +
Sbjct: 178 EKPKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMD 236
Query: 222 QPRD--YITG 229
RD Y+ G
Sbjct: 237 TLRDKVYLEG 246
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 161/360 (44%), Gaps = 46/360 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA IL G G RL P+T + PK V +KP+I +QIE L+ G+ ++ + ++ + +
Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNK-- 58
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALAR--DKLIDDTGEPFFVLNSDVISEYPF 118
+ FE KL I +Q+ + GT + A+ D+ + G+ FF +E
Sbjct: 59 ----EYFEKKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFS------NEKEI 108
Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYL 178
+I E +I+ KV P YGV+V+ ++ + K +EKP++ N INAGIY
Sbjct: 109 CNIITLK-----ENAIIGVKVSNPKDYGVLVL-DNQNNLSKIIEKPEIPPSNLINAGIYK 162
Query: 179 LNPAV---LDRIELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYI-TGXX 231
LN + LD+I + E E+ I L + ++ + G+WMDIG+P + I
Sbjct: 163 LNSDIFTYLDKISISERG-ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKW 221
Query: 232 XXXXXXXXXXXXXXATGANIVGNVLVHESAQ------------IGEGCLIGPDVAVGPGC 279
I G V++ E A+ IG+G IGP+ + P
Sbjct: 222 ALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYT 281
Query: 280 V------VESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
+ + + V + +M G +I + + S+I G + N+ ++V V
Sbjct: 282 ILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKV 341
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK ++L GG GTRL P+T +V K L+ +KPMI + + L G+ ++++ + +
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
L ++ G++ + EP G A + +D + D + VL +V + F+E
Sbjct: 64 YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGD--SKVALVLGDNVFYGHRFSE 121
Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
++ + A I V +P +GVV +S G+V EKP N + G+Y +
Sbjct: 122 ILRRAASLEDGAVIFGYYVRDPRPFGVVEF-DSEGRVISIEEKPSRPKSNYVVPGLYFYD 180
Query: 181 PAVL---------DRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 221
V+ DR EL TS+ +E L +L + W+D G
Sbjct: 181 NQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMA--WLDTG 228
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 12/122 (9%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+KA+IL G GTRLRPLT + PK LV+ KP+I +QIE LK G+ ++++ + Y E
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKE-Q 84
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
++LKE K G++++ + + L L +++L + +V+++D Y F
Sbjct: 85 FDYLKE---KYGVRLVFNDKYADYNNFYSLYLVKEELANS-----YVIDAD---NYLFKN 133
Query: 121 MI 122
M
Sbjct: 134 MF 135
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+KA+IL G GTRLRPLT + PK LV+ KP+I +QIE LK G+ ++++ + Y E
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKE-Q 84
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKL 97
++LKE K G++++ + + L L +++L
Sbjct: 85 FDYLKE---KYGVRLVFNDKYADYNNFYSLYLVKEEL 118
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 22/233 (9%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 13 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 72
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L + G+ + + + P G A + + +D VL ++ + F E+
Sbjct: 73 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 130
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+ AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 131 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 189
Query: 182 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 221
V+D R EL T + + + + + G+ +A W+D G
Sbjct: 190 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 236
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P GTA + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGTAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+E A++ V++P +YGVV +++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIG 221
+V++ + L+P++ +E +I +E G+L AM+ G+ W+D G
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTG 228
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 22/233 (9%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 14 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 73
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L + G+ + + + P G A + + +D VL ++ + F E+
Sbjct: 74 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 131
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+ AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 132 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 190
Query: 182 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 221
V+D R EL T + + + + + G+ +A W+D G
Sbjct: 191 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 237
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 22/233 (9%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 4 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 63
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L + G+ + + + P G A + + +D VL ++ + F E+
Sbjct: 64 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 121
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+ AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 122 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 180
Query: 182 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 221
V+D R EL T + + + + + G+ +A W+D G
Sbjct: 181 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 227
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 16/229 (6%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EV 59
MK +IL GG G+RL P+T K L+ PMI H + LK +T++++ +
Sbjct: 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGD 84
Query: 60 MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YP 117
+++FL + + G+ + + G A L L D + +D +L ++ S+ P
Sbjct: 85 VVSFLGSGQ-EFGVSFTYRVQDKAGGIAQALGLCEDFVGND--RMVVILGDNIFSDDIRP 141
Query: 118 FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 177
+ E EF G A +++ VD+P ++GV ++ K+ + EKPK + GIY
Sbjct: 142 YVE--EFTNQKEG-AKVLLQSVDDPERFGVANIQNR--KIIEIEEKPKEPKSSYAVTGIY 196
Query: 178 LLNPAVLDRI-ELRPTSIEK----EVFPKIALEGKLFAMVLPGFWMDIG 221
L + V I EL+P++ + ++ G L + G+W D G
Sbjct: 197 LYDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAG 245
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 22/233 (9%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KP I + + L G+ E+++ Q
Sbjct: 4 KGIILAGGSGTRLHPATLAISKQLLPVYDKPXIYYPLSTLXLAGIREILIISTPQDTPRF 63
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L + G+ + + + P G A + + +D VL ++ + F E+
Sbjct: 64 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 121
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+ AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 122 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 180
Query: 182 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 221
V+D R EL T + + + + + G+ +A W+D G
Sbjct: 181 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIXGRGYA------WLDTG 227
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 103/234 (44%), Gaps = 24/234 (10%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T V K L+ +KP I + + L G+ E+++ + +
Sbjct: 5 KGIILAGGSGTRLHPITRGVSKQLLPIYDKPXIYYPLSVLXLAGIREILIITTPEDKGYF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-FVLNSDVISEYPFAE 120
L ++ GI++ +++ P G A + L GEP VL ++ F+
Sbjct: 65 QRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFL---NGEPSCLVLGDNIFFGQGFSP 121
Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
+ A A++ +V +P ++GVV +++ + EKPK N G+Y +
Sbjct: 122 KLRHVAARTEGATVFGYQVXDPERFGVVEFDDNFRAI-SLEEKPKQPKSNWAVTGLYFYD 180
Query: 181 PAVL---------DRIELRPTSIEKEVFP----KIALEGKLFAMVLPGFWMDIG 221
V+ +R EL TSI + + L G+ FA W+D G
Sbjct: 181 SKVVEYAKQVKPSERGELEITSINQXYLEAGNLTVELLGRGFA------WLDTG 228
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 111/233 (47%), Gaps = 10/233 (4%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVDPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+E A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 227
+V++ + L+P++ +E +I +E G+L AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+E A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 227
+V++ + L+P++ +E +I +E G+L AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 10/203 (4%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 12 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 68
Query: 64 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
+ E LG I + + PLGT + L DD V + D ++ A++
Sbjct: 69 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 128
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 178
I H+A +++ T +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 129 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 188
Query: 179 LNPAVLDRI--ELRPTSIEKEVF 199
+ A L L + ++E++
Sbjct: 189 FDIAALRSALSRLSSNNAQQELY 211
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 262 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 299 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 340
Query: 317 QWARVENMTILGED 330
+ + T LG D
Sbjct: 341 PFTYLRPGTALGAD 354
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 10/227 (4%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+E A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIG 221
+V++ + L+P++ +E +I +E G+L AM+ G+ W+D G
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTG 228
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 10/227 (4%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL-N 180
+E A++ V++P +YGVV +++ G EKP N G+Y N
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 181 PAVLDRIELRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 221
VL L+P++ +E +I LE ++ L G W+D G
Sbjct: 182 DVVLMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 10/203 (4%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 16 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 72
Query: 64 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
+ E LG I + + PLGT + L DD V + D ++ A++
Sbjct: 73 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 132
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 178
I H+A +++ T +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 133 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 192
Query: 179 LNPAVLDRI--ELRPTSIEKEVF 199
+ A L L + ++E++
Sbjct: 193 FDIAALRSALSRLSSNNAQQELY 215
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 262 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 303 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 344
Query: 317 QWARVENMTILGED 330
+ + T LG D
Sbjct: 345 PFTYLRPGTALGAD 358
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 10/203 (4%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 10 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 66
Query: 64 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
+ E LG I + + PLGT + L DD V + D ++ A++
Sbjct: 67 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 126
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 178
I H+A +++ T +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 127 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 186
Query: 179 LNPAVLDRI--ELRPTSIEKEVF 199
+ A L L + ++E++
Sbjct: 187 FDIAALRSALSRLSSNNAQQELY 209
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 262 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 297 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 338
Query: 317 QWARVENMTILGED 330
+ + T LG D
Sbjct: 339 PFTYLRPGTALGAD 352
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 10/203 (4%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 18 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 74
Query: 64 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
+ E LG I + + PLGT + L DD V + D ++ A++
Sbjct: 75 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 134
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 178
I H+A +++ T +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 135 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 194
Query: 179 LNPAVLDRI--ELRPTSIEKEVF 199
+ A L L + ++E++
Sbjct: 195 FDIAALRSALSRLSSNNAQQELY 217
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 262 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 305 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 346
Query: 317 QWARVENMTILGED 330
+ + T LG D
Sbjct: 347 PFTYLRPGTALGAD 360
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+E A++ V++P +YGVV +++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIG 221
V+ + L+P++ +E +I LE G+L AM+ G+ W+D G
Sbjct: 182 DVVQMAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTG 228
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 10/233 (4%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+E A++ V++P +YGVV +++ G EKP N G++ +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLFFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 227
+V++ + L+P++ +E +I +E G+L AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 12/228 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKL-IDDTGEPFFVLNSDVISEYPFAE 120
L ++ G+ + + P G A + + + DD VL ++ + +
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGADDCA---LVLGDNIFYGHDLPK 121
Query: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180
++E A++ V++P +YGVV +++ G EKP N G+Y +
Sbjct: 122 LMEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYD 180
Query: 181 PAVLDRIE-LRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 221
V+ + L+P++ +E +I LE ++ L G W+D G
Sbjct: 181 NDVVQMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 10/227 (4%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+E A++ V++P +YGVV +++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 221
V+ + L+P++ +E +I LE ++ L G W+D G
Sbjct: 182 DVVQMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 4/193 (2%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 181
+E A++ V++P +YGVV +++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 AVLDRIE-LRPTS 193
+V++ + L+P++
Sbjct: 182 SVVEMAKNLKPSA 194
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 137/360 (38%), Gaps = 48/360 (13%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A KPM+ H I+A +G V L + E
Sbjct: 6 MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGE-- 60
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
LK+ A + + + E LGT + A DD E +L DV IS
Sbjct: 61 --LLKKTLADPSLNWVL--QAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTL 114
Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG----NKINA 174
++ K GG ++ K+D PS YG +V E G V VE N+IN
Sbjct: 115 QRLLAA-KPEGG-IGLLTVKLDNPSGYGRIVRE--NGDVVGIVEHKDASDAQREINEINT 170
Query: 175 GIYLLNPAVLDR----IELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYI 227
GI + N L R ++ E + IAL +GK A V P ++ + +
Sbjct: 171 GILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRL 230
Query: 228 TGXXXXXXXXXXXXXXXXATGANIV-------------GNVLVHESAQIGEGCLI-GPDV 273
G ++ G + ++ I EG +I G V
Sbjct: 231 QLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRV 290
Query: 274 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
+G GCV L C + I + + + + + TVG +AR+ L E HV
Sbjct: 291 RIGTGCV------LKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHV 344
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 136/357 (38%), Gaps = 48/357 (13%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
+IL G GTR+ +PK L A KPM+ H I+A +G V L + E
Sbjct: 12 VILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGE----L 64
Query: 64 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEM 121
LK+ A + + + E LGT + A DD E +L DV IS +
Sbjct: 65 LKKTLADPSLNWVL--QAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTLQRL 120
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG----NKINAGIY 177
+ K GG ++ K+D PS YG +V E G V VE N+IN GI
Sbjct: 121 LAA-KPEGG-IGLLTVKLDNPSGYGRIVRE--NGDVVGIVEHKDASDAQREINEINTGIL 176
Query: 178 LLNPAVLDR----IELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYITGX 230
+ N L R ++ E + IAL +GK A V P ++ + +
Sbjct: 177 VANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLS 236
Query: 231 XXXXXXXXXXXXXXXATGANIV-------------GNVLVHESAQIGEGCLI-GPDVAVG 276
G ++ G + ++ I EG +I G V +G
Sbjct: 237 ALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIG 296
Query: 277 PGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
GCV L C + I + + + + + TVG +AR+ L E HV
Sbjct: 297 TGCV------LKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHV 347
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 33/198 (16%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A K M+ H I+A +G V L + +++
Sbjct: 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 62
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
LK+ + + E LGT + A PFF + D++ Y
Sbjct: 63 KQALKDDNLNWVL------QAEQLGTGHAMQQA---------APFFADDEDILMLYGDVP 107
Query: 121 MIEFH--------KAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK- 171
+I K GG ++ K+D+P+ YG + E GKV VE +
Sbjct: 108 LISVETLQRLRDAKPQGG-IGLLTVKLDDPTGYGRITRE--NGKVTGIVEHKDATDEQRQ 164
Query: 172 ---INAGIYLLNPAVLDR 186
IN GI + N A + R
Sbjct: 165 IQEINTGILIANGADMKR 182
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 251 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV-----MR-GVRIK 299
I GNV + +IG GC +IG D + P VVE + CT+ +R G +
Sbjct: 280 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELL 339
Query: 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 344
+ A + + + + +G+ ++ ++T LG D + D + G +
Sbjct: 340 EGAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI 383
>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
Length = 331
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 33/198 (16%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A K M+ H I+A +G V L + +++
Sbjct: 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 62
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
LK+ + + E LGT + A PFF + D++ Y
Sbjct: 63 KQALKDDNLNWVL------QAEQLGTGHAMQQA---------APFFADDEDILMLYGDVP 107
Query: 121 MIEFH--------KAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK- 171
+I K GG ++ K+D+P+ YG + E GKV VE +
Sbjct: 108 LISVETLQRLRDAKPQGG-IGLLTVKLDDPTGYGRITRE--NGKVTGIVEHKDATDEQRQ 164
Query: 172 ---INAGIYLLNPAVLDR 186
IN GI + N A + R
Sbjct: 165 IQEINTGILIANGADMKR 182
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 251 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV 292
I GNV + +IG GC +IG D + P VVE + CT+
Sbjct: 280 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTI 326
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 105/257 (40%), Gaps = 55/257 (21%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
KA+I V G GTR+ P T ++PK ++ +KP+I + + A G+TE+VL + +
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69
Query: 62 NFLK---EFEAKLGIKI----------ICSQETEPLGTAGPLA-------LARDKLIDDT 101
N E EA L ++ IC + LA L ++ D
Sbjct: 70 NHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD- 128
Query: 102 GEPFFVLNSDVI--------SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME-- 151
EP V+ DVI S+ AEMI G + IMV V + + YGVV +
Sbjct: 129 -EPVAVILPDVILDEYESDLSQDNLAEMIRRFD-ETGHSQIMVEPVADVTAYGVVDCKGV 186
Query: 152 -----ESTGKVEKFVEKPKLFVG--NKINAGIYLLN-----------PAVLDRIELRPT- 192
ES V VEKPK V N G Y+L+ P D I+L
Sbjct: 187 ELAPGESVPMV-GVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAI 245
Query: 193 --SIEKEVFPKIALEGK 207
IEKE ++GK
Sbjct: 246 DMLIEKETVEAYHMKGK 262
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 33/216 (15%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM- 60
KA+ V G GTR P T ++PK ++ ++P+I + ++ G+ +++ +
Sbjct: 16 KAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALE 75
Query: 61 --LNFLKEFEAKLGIK----------------IICSQETEPLGTAGPLALARDKLIDDTG 102
+ E EA + + I ++ EP+G + ARD + D
Sbjct: 76 DHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGD--- 132
Query: 103 EPFFV-LNSDVISEYP--FAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTG-- 155
EPF V L D + P +M++ + GG I +V D+ +YG++ G
Sbjct: 133 EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGGNL-ICAEEVPDDQTHRYGIITPGTQDGVL 191
Query: 156 -KVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIE 188
+V+ VEKP N G Y+L P V+ +E
Sbjct: 192 TEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILE 227
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 44/358 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ A+IL G GTR+ +PK L A KPM+ H I+ +G + L + ++M
Sbjct: 6 LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLM 62
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPF 118
L + + +TE LGTA + A D+ E VL D +I++
Sbjct: 63 RTHLANEQVNWVL------QTEQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETL 114
Query: 119 AEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGN----KINA 174
++IE +G +++ +D P+ YG ++ E G V VE+ ++N
Sbjct: 115 EKLIEAKPENG--IALLTVNLDNPTGYGRIIRE--NGNVVAIVEQKDANAEQLNIKEVNT 170
Query: 175 GIYLLNPAV----LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGX 230
G+ + + A L R+ E + IAL + V+ D+ + + G
Sbjct: 171 GVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVME----VEGA 226
Query: 231 XXXXXXXXXXXXXXXATGAN-IVGNVLVHESAQIG-EGCL-IGPDVAVGPGCVVESGVRL 287
+ ++ V++++ A+ G L G DV + ++E V+L
Sbjct: 227 NNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKL 286
Query: 288 -SRCTVMRG-----------VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 333
R + G V IK ++ + SI+G + +G ++R+ L + HV
Sbjct: 287 GDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHV 344
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 251 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS 305
I GNV + + +IG GC +IG DV + P V+E + + + R++ A ++
Sbjct: 280 IEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELA 339
Query: 306 SSI-IG-----WHSTVGQWARVENMTILGE 329
+ +G STVG+ ++V ++T +G+
Sbjct: 340 AETHVGNFVEIKKSTVGKGSKVNHLTYVGD 369
>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
pdb|4AC3|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
Length = 459
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/354 (21%), Positives = 137/354 (38%), Gaps = 34/354 (9%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ +PK L + A M+ H ++ A+ + V + ++ E++
Sbjct: 5 AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 61
Query: 63 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEM 121
L E + ++E LGT + + L +G + ++ +I+ +
Sbjct: 62 VLAE-------QTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 114
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIY 177
I+FH H A+I+ + D P YG +V ++ +V + VE+ K IN G Y
Sbjct: 115 IDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTY 173
Query: 178 LLNP----AVLDRIELRPTSIEKEVFPKIAL----EGKLFAMVLPGFWMDIGQPRDYITG 229
+ + L I E + I + K+ A L F +G D +
Sbjct: 174 VFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLG-VNDRVAL 232
Query: 230 XXXXXXXXXXXXXXXXATGANIVG--------NVLVHESAQIGEGCLIGPDVAVGPGCVV 281
G + V +V + QI ++ +G V+
Sbjct: 233 ATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVL 292
Query: 282 ESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 335
+G + T+ G I ++ I S + TVG +A + + LG VH+ +
Sbjct: 293 TNGTYVVDSTIGAGAVI-TNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGN 345
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
Length = 468
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/354 (21%), Positives = 137/354 (38%), Gaps = 34/354 (9%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ +PK L + A M+ H ++ A+ + V + ++ E++
Sbjct: 14 AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV-- 68
Query: 63 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEM 121
E L + ++E LGT + + L +G + ++ +I+ +
Sbjct: 69 -----EEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 123
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIY 177
I+FH H A+I+ + D P YG +V ++ +V + VE+ K IN G Y
Sbjct: 124 IDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTY 182
Query: 178 LLNP----AVLDRIELRPTSIEKEVFPKIAL----EGKLFAMVLPGFWMDIGQPRDYITG 229
+ + L I E + I + K+ A L F +G D +
Sbjct: 183 VFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLG-VNDRVAL 241
Query: 230 XXXXXXXXXXXXXXXXATGANIVG--------NVLVHESAQIGEGCLIGPDVAVGPGCVV 281
G + V +V + QI ++ +G V+
Sbjct: 242 ATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVL 301
Query: 282 ESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 335
+G + T+ G I ++ I S + TVG +A + + LG VH+ +
Sbjct: 302 TNGTYVVDSTIGAGAVI-TNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGN 354
>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
Length = 459
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ +PK L + A M+ H ++ A+ + V + ++ E++
Sbjct: 5 AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV-- 59
Query: 63 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEM 121
E L + ++E LGT + + L +G + ++ +I+ +
Sbjct: 60 -----EEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 114
Query: 122 IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIY 177
I+FH H A+I+ + D P YG +V ++ +V + VE+ K IN G Y
Sbjct: 115 IDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTY 173
Query: 178 LLN 180
+ +
Sbjct: 174 VFD 176
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 141/367 (38%), Gaps = 47/367 (12%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILH-QIEALKAVGVTEVVLAINYQPEVML 61
A +L GG G+RL+ LT KP V F K I+ + G+ + +A Y+ ++
Sbjct: 15 AYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLI 74
Query: 62 NFLK---EF---EAKLGIKII-CSQ---ETEPL-GTAGPLALARDKLIDDTGEPFFVLNS 110
L+ +F E I+ SQ ET+ GTA + D + E +L
Sbjct: 75 RHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYXVILAG 134
Query: 111 DVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKVEKFVEKPKL-- 166
D I + + ++ H G + +I +V E + +GV + E ++ F+EKP
Sbjct: 135 DHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVNEKD-EIIDFIEKPADPP 193
Query: 167 -FVGNK----INAGIYLLNPAVLD----RIELRPTSIE---KEVFPKIALEGKLFAMVLP 214
GN+ + GIY+ + L R PTS K++ P I GK A
Sbjct: 194 GIPGNEGFALASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFA 253
Query: 215 G-----------FWMDIGQPRDYITGXXXXXXXXXXXXXXXXA----TGANIVGNVLVHE 259
+W D+G Y + T A I
Sbjct: 254 DSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVH 313
Query: 260 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 319
+ G + V C++ SG L+R + GVR ++ + ++++ +G+ A
Sbjct: 314 DDEDRRGSAVSS--VVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHA 370
Query: 320 RVENMTI 326
++ N+ I
Sbjct: 371 QLSNVVI 377
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 47/266 (17%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVT-------------E 48
K L G+GTR P+T ++PK ++ +KP+I + +E G E
Sbjct: 4 KCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLE 63
Query: 49 VVLAINYQPEVMLNFLKEFEAKLGIKIICSQ------ETEPLGTAGPLALARDKLIDDTG 102
+Y+ E + + A I+ I + + + G L + LI +
Sbjct: 64 DYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGN-- 121
Query: 103 EPFFVLNSD---VISEYP--FAEMIE-FHKAHGGEASIMVTKVDEPSKYGVVV---MEES 153
EPF V+ +D + ++P +M + K +I ++E SKYGV+ +EE
Sbjct: 122 EPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEEG 181
Query: 154 TGKVEKFVEKPKLFVGNKINA-------GIYLLNPAVLDRI-ELRPTSIEK----EVFPK 201
+++ VEKP N+ +A G Y+L P + + + E +P + +
Sbjct: 182 VYEIKDMVEKP-----NQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRT 236
Query: 202 IALEGKLFAMVLPGFWMDIGQPRDYI 227
A ++ A G D G YI
Sbjct: 237 QAKRKRIIAYQFKGKRYDCGSVEGYI 262
>pdb|2PA4|A Chain A, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|B Chain B, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|C Chain C, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|D Chain D, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
Length = 323
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 33/211 (15%)
Query: 8 GGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE---VMLNFL 64
G GTR P T +VPK L+ + P I ++ A +A + LAI P V+ +F
Sbjct: 20 AGLGTRFLPATKTVPKELLPVVDTPGI--ELIAAEAAELGATRLAIITAPNKAGVLAHFE 77
Query: 65 KEFE-------------------AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF 105
+ E A IK + + +PLG + LA L DD
Sbjct: 78 RSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVA 137
Query: 106 FVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP--SKYGVVVMEEST-----GKVE 158
+L D++ E + +A G + + +V E SKYG+ +E T KV+
Sbjct: 138 VMLPDDLVLPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVK 197
Query: 159 KFVEKPKL-FVGNKINA-GIYLLNPAVLDRI 187
VEKP + +++ A G YLL+ + D +
Sbjct: 198 GMVEKPAIEDAPSRLAATGRYLLDRKIFDAL 228
>pdb|2XME|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|G Chain G, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|H Chain H, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|I Chain I, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|J Chain J, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|K Chain K, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|L Chain L, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
Length = 232
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 37/234 (15%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA+IL G GTRL VPKPLV +IL ++ L + V+E ++ + + +
Sbjct: 19 MKAVILAAGLGTRLG----GVPKPLVRVGGCEIILRTMKLL-SPHVSEFIIVASRYADDI 73
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
FLK + KI+ E G L +A++ + D F + D + F E
Sbjct: 74 DAFLK--DKGFNYKIVRHDRPEK-GNGYSLLVAKNHVED----RFILTMGDHVYSQQFIE 126
Query: 121 MIEFHKAHGGEASI-----MVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAG 175
KA GE I + E +K V G+V K + + F + ++ G
Sbjct: 127 -----KAVRGEGVIADREPRFVDIGEATKIRV-----EDGRVAKIGKDLREF--DCVDTG 174
Query: 176 IYLLNPAVLDRIE-LRPTSIEKEVFP--KIALEGKLFAMVLPG-FWMDIGQPRD 225
++L+ ++ + E LR ++E P +I +L + G WMD+ D
Sbjct: 175 FFVLDDSIFEHAEKLR----DREEIPLSEIVKLARLPVTYVDGELWMDVDTKED 224
>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
Geranyltransferase From Thermus Thermophilus Hb8
Length = 337
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 29/220 (13%)
Query: 3 ALILVGGFGTRLRPLTL-SVPKPLVE-FANKPMILHQIEALKAVGVTE-VVLAINYQPEV 59
AL++ GG G RL PL+ PKP + F K ++ +E L + E +LA+ E
Sbjct: 5 ALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEA 64
Query: 60 MLNFLKEFEAKLGIKIICSQETEPLG--TAGPLALARDKLIDDTGEPFFVLNSD--VISE 115
+ + GI+++ EPLG TAG + L + + + E VL +D V +
Sbjct: 65 VARPYAD-----GIRLLL----EPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDD 115
Query: 116 YPFAEMIE--FHKAHGGEASIMVTKVDEP-SKYGVVVMEESTG---KVEKFVEKPK---- 165
+ E + A G + + P ++YG + + G + E FVEKP
Sbjct: 116 EAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEA 175
Query: 166 ---LFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKI 202
+ G N G++ PA + + R E ++
Sbjct: 176 LEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERL 215
>pdb|2X5S|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Apo State.
pdb|2X5S|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Apo State.
pdb|2X5Z|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gdp-Mannose.
pdb|2X5Z|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gdp-Mannose.
pdb|2X60|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gtp.
pdb|2X60|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gtp.
pdb|2X65|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Mannose-1-Phosphate.
pdb|2X65|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Mannose-1-Phosphate
Length = 336
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 81/203 (39%), Gaps = 30/203 (14%)
Query: 1 MKALILVGGFGTRLRPL-TLSVPKPLVE-FANKPMILHQIEALKAVGVTEVVLAINYQPE 58
MKALIL GG G R PL T PK ++ F NK ++ E + + V+ + ++
Sbjct: 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDY 61
Query: 59 VMLNFLKEFEAKLGIKIICSQETEPL-GTAGPLALARDKLIDDTGEPFFVLNSDVISEYP 117
V KE II EP+ P KL DD EP VL +D +
Sbjct: 62 VERT-KKELPELPDENIIA----EPMKKNTAPACFIGTKLADD-DEPVLVLPAD----HR 111
Query: 118 FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTG---------------KVEKFVE 162
+ +F K +A + K D +G+V TG KV +F E
Sbjct: 112 IPDTKKFWKT-VKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKVAQFRE 170
Query: 163 KPKLFVGNK-INAGIYLLNPAVL 184
KP L K + +G +L N +
Sbjct: 171 KPDLETAKKFVESGRFLWNSGMF 193
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 67/370 (18%), Positives = 137/370 (37%), Gaps = 72/370 (19%)
Query: 12 TRLRPLTLSVPKPLVEF-ANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL-KEFEA 69
TRL PLT KP V AN +I + ++++ + + + L + + +
Sbjct: 32 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS 91
Query: 70 KLG-------IKIICSQET--EPLGTAGPLALARDKLI---DDTGEPFFVLNSDVISEYP 117
+G ++++ +Q++ P G R L + T + +L D +
Sbjct: 92 NMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMD 151
Query: 118 FAEMIEFHKAHGGEASIMVTKVDE--PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA- 174
+ + I+ H+ + ++ +DE + +G++ ++E G++ +F EKP+ G ++ A
Sbjct: 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEFAEKPQ---GEQLQAM 207
Query: 175 -----------------------GIYLLNPAVLDRIELR-----PTSIEKEVFP-KIALE 205
GIY+++ V+ + LR EV P +L
Sbjct: 208 KVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNL-LRDKFPGANDFGSEVIPGATSLG 266
Query: 206 GKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXXXXATGANIVGNVLVHESAQIGE 265
++ A + G+W DIG + + + S +
Sbjct: 267 MRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDA 326
Query: 266 GCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 325
D +G GCV+ K+ I S++G S + + A +E+
Sbjct: 327 DVT---DSVIGEGCVI------------------KNCKIHHSVVGLRSCISEGAIIEDSL 365
Query: 326 ILGEDVHVCD 335
++G D + D
Sbjct: 366 LMGADYYETD 375
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 307
G+ I + VH +A + EG IG + +GP C+V V + TV++ S
Sbjct: 1 GSMIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK----------SHV 50
Query: 308 IIGWHSTVGQWARVENMTILGE 329
++ H+ +G+ + +GE
Sbjct: 51 VVNGHTKIGRDNEIYQFASIGE 72
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 313
+ VH +A + EG IG + +GP C+V V + TV++ S ++ H+
Sbjct: 5 SAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK----------SHVVVNGHT 54
Query: 314 TVGQWARVENMTILGE 329
+G+ + +GE
Sbjct: 55 KIGRDNEIYQFASIGE 70
>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|B Chain B, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|C Chain C, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
Length = 294
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 307
GA + L+H +A I +I DV +GP C++ V T+ G ++ H
Sbjct: 30 GAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQV-----TIGAGTKLHSHV----- 79
Query: 308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341
++G + +GQ + +GE VC ++ G
Sbjct: 80 VVGGFTRIGQNNEIFQFASVGE---VCQDLKYKG 110
>pdb|3K8D|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8E|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
Length = 264
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ 56
KPLV+ KPMI+H +E + G +++A +++
Sbjct: 35 KPLVDINGKPMIVHVLERARESGAERIIVATDHE 68
>pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSH|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
Length = 236
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEAL 41
A IL GG GTR+ L PK +E ++P+++H IE
Sbjct: 5 AGILAGGTGTRMGISNL--PKQFLELGDRPILIHTIEKF 41
>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a
Resolution (P63 Form)
Length = 265
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 307
GA + L+H +A I +I DV +GP C++ V T+ G ++ H
Sbjct: 1 GAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQV-----TIGAGTKLHSHV----- 50
Query: 308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341
++G + +GQ + +GE VC ++ G
Sbjct: 51 VVGGFTRIGQNNEIFQFASVGE---VCQDLKYKG 81
>pdb|3F1C|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
pdb|3F1C|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
Length = 246
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEAL 41
A IL GG GTR+ +S+PK + KP+I+H +E
Sbjct: 6 AQILAGGKGTRMG--NVSMPKQFLPLNGKPIIVHTVEKF 42
>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor
pdb|4AA7|B Chain B, E.Coli Glmu In Complex With An Antibacterial Inhibitor
Length = 231
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 251 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV-----MR-GVRIK 299
I GNV + +IG GC +IG D + P VVE + CT+ +R G +
Sbjct: 55 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELL 114
Query: 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 344
+ A + + + + +G+ ++ ++T LG D + D + G +
Sbjct: 115 EGAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI 158
>pdb|3TWD|A Chain A, Glmuc1 In Complex With An Antibacterial Inhibitor
pdb|3TWD|B Chain B, Glmuc1 In Complex With An Antibacterial Inhibitor
Length = 222
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 251 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV-----MR-GVRIK 299
I GNV + +IG GC +IG D + P VVE + CT+ +R G +
Sbjct: 49 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELL 108
Query: 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 344
+ A + + + + +G+ ++ ++T LG D + D + G +
Sbjct: 109 EGAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI 152
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 255 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL 287
VL+H SA + +IG V+VGP C + S V+L
Sbjct: 8 VLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKL 40
>pdb|3R0S|A Chain A, Udp-N-Acetylglucosamine Acyltransferase From Campylobacter
Jejuni
Length = 266
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR-GVRIKKHACISSSIIGWHSTV 315
+H SA I EG +G DV + V ++ V++ G RI +S + IG HS V
Sbjct: 7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARI-----LSDTTIGDHSRV 61
Query: 316 GQWA 319
+A
Sbjct: 62 FSYA 65
>pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|C Chain C, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|D Chain D, Crystal Structure Of Cmp-Kdo Synthetase
Length = 256
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ 56
KPLV+ KP I+H +E + G +++A +++
Sbjct: 19 KPLVDINGKPXIVHVLERARESGAERIIVATDHE 52
>pdb|3P47|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Cysteine
Length = 315
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 247 TGANIVGNVLVHESAQIGEGCLIGPDV 273
TGA ++GN++V +IG C I DV
Sbjct: 236 TGAKVLGNIIVGSHVRIGANCWIDRDV 262
>pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H6J|B Chain B, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7E|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7F|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7G|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7H|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1H7T|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQ9|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQ9|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQC|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1GQC|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
Length = 245
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 23 KPLVEFANKPMILHQIE-ALKAVGVTEVVLAIN 54
KPL++ KPMI H E AL+ GV EV +A +
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVATD 51
>pdb|3Q1X|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Serine
Length = 313
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 247 TGANIVGNVLVHESAQIGEGCLIGPDV 273
TGA ++GN++V +IG C I DV
Sbjct: 234 TGAKVLGNIIVGSHVRIGANCWIDRDV 260
>pdb|3P1B|A Chain A, Crystal Structure Of The Native Serine Acetyltransferase 1
From Entamoeba Histolytica
Length = 314
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 247 TGANIVGNVLVHESAQIGEGCLIGPDV 273
TGA ++GN++V +IG C I DV
Sbjct: 235 TGAKVLGNIIVGSHVRIGANCWIDRDV 261
>pdb|3JTJ|A Chain A, 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From
Yersinia Pestis
Length = 253
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
KPL + A KP ++H E A G V++A ++ P+V+
Sbjct: 22 KPLADIAGKPXVVHVXERALASGADRVIVATDH-PDVV 58
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 249 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVV------ESGVRL-SRCTVMRGVRIKKH 301
A + NV + +A I G +G +V +G GC V +G RL + T+ ++I ++
Sbjct: 110 AKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQN 169
Query: 302 ACISSSII------GWHSTVGQWARVENM--TILGEDVHV 333
I S + G+ + G W ++ + I+G+ V +
Sbjct: 170 CLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEI 209
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 260 SAQIGEGCLIGPDVAVGPGCVVESGVRL-------SRCTVMRGVRIKKHACISSSIIGWH 312
SA I +G +V++G V+ESGV L + C V + +I + + +++ +H
Sbjct: 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH 162
Query: 313 S-TVGQWARVENMTILGED 330
+GQ +++ T++G D
Sbjct: 163 EIQIGQNCLIQSGTVVGAD 181
>pdb|3KWD|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 1
pdb|3KWE|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 2
Length = 213
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 256 LVHESAQIGEGCLIG-----PDVAVGPGCVV 281
L+H A IG+GC IG + VG GCVV
Sbjct: 125 LIHGPAYIGDGCFIGFRSTVFNARVGAGCVV 155
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
+H +A + + P +VG V+ESG R+ GV I H C +IG S +G
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIG-----AGVSIGAH-C----VIGARSVIG 171
Query: 317 QWARVENMTILGEDVHVCDEIYSNGGVVL 345
+ + L DV + + G V+
Sbjct: 172 EGGWLAPRVTLYHDVTIGARVSIQSGAVI 200
>pdb|2XWL|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Ctp And Mg
pdb|2XWL|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Ctp And Mg
pdb|2XWM|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Cmp
pdb|2XWM|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Cmp
Length = 223
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTE-VVLAI 53
A++ G G RLR PK V P++ H + L+A GV + +V+A+
Sbjct: 5 AVVPAAGSGERLR---AGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAV 53
>pdb|3KWC|A Chain A, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|B Chain B, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|C Chain C, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|D Chain D, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|E Chain E, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|F Chain F, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
Length = 229
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 256 LVHESAQIGEGCLIG-----PDVAVGPGCVV 281
L+H A IG+GC IG + VG GCVV
Sbjct: 125 LIHGPAYIGDGCFIGFRSTVFNARVGAGCVV 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,281,605
Number of Sequences: 62578
Number of extensions: 406314
Number of successful extensions: 1208
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1056
Number of HSP's gapped (non-prelim): 120
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)