Query 018060
Match_columns 361
No_of_seqs 187 out of 2306
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1322 GDP-mannose pyrophosph 100.0 9.2E-66 2E-70 436.0 30.3 361 1-361 10-371 (371)
2 COG1208 GCD1 Nucleoside-diphos 100.0 7.8E-57 1.7E-61 410.0 41.5 336 1-348 2-348 (358)
3 KOG1460 GDP-mannose pyrophosph 100.0 1.3E-53 2.8E-58 356.2 25.1 359 2-361 4-407 (407)
4 PRK05293 glgC glucose-1-phosph 100.0 4.6E-52 9.9E-57 386.5 36.0 333 1-341 4-359 (380)
5 PRK00844 glgC glucose-1-phosph 100.0 2.9E-50 6.3E-55 376.0 34.2 336 1-341 6-382 (407)
6 TIGR01208 rmlA_long glucose-1- 100.0 1.8E-49 3.9E-54 365.3 38.8 330 2-341 1-339 (353)
7 COG0448 GlgC ADP-glucose pyrop 100.0 1.1E-50 2.5E-55 357.1 28.3 333 2-342 7-363 (393)
8 PRK02862 glgC glucose-1-phosph 100.0 8.1E-49 1.8E-53 367.8 34.6 319 1-323 4-394 (429)
9 PRK00725 glgC glucose-1-phosph 100.0 2.2E-48 4.8E-53 364.5 35.9 334 1-340 16-393 (425)
10 TIGR02092 glgD glucose-1-phosp 100.0 3.7E-49 8.1E-54 365.4 30.1 339 1-346 3-360 (369)
11 TIGR02091 glgC glucose-1-phosp 100.0 3.2E-48 6.9E-53 358.4 34.0 333 3-341 1-361 (361)
12 PLN02241 glucose-1-phosphate a 100.0 3.4E-48 7.4E-53 364.7 34.6 332 1-336 4-420 (436)
13 COG1207 GlmU N-acetylglucosami 100.0 1.7E-47 3.7E-52 336.6 33.1 325 1-334 3-348 (460)
14 PRK14355 glmU bifunctional N-a 100.0 8.4E-46 1.8E-50 352.2 36.7 338 1-348 4-362 (459)
15 PRK14352 glmU bifunctional N-a 100.0 1.3E-44 2.9E-49 345.5 37.5 339 1-348 5-364 (482)
16 PRK14358 glmU bifunctional N-a 100.0 3.1E-44 6.7E-49 341.6 35.2 333 1-344 8-360 (481)
17 PRK14356 glmU bifunctional N-a 100.0 3.7E-44 8E-49 341.4 35.3 337 1-350 6-365 (456)
18 TIGR01173 glmU UDP-N-acetylglu 100.0 9.5E-44 2.1E-48 338.6 35.6 333 1-347 1-354 (451)
19 KOG1462 Translation initiation 100.0 1.2E-44 2.6E-49 313.3 21.4 339 1-345 10-423 (433)
20 PRK14353 glmU bifunctional N-a 100.0 3.3E-42 7.1E-47 327.1 37.3 349 1-360 6-423 (446)
21 PRK14359 glmU bifunctional N-a 100.0 5.2E-42 1.1E-46 324.6 38.1 345 1-360 3-410 (430)
22 KOG1461 Translation initiation 100.0 8.1E-43 1.8E-47 318.9 29.8 339 1-342 25-420 (673)
23 COG1209 RfbA dTDP-glucose pyro 100.0 5.4E-43 1.2E-47 292.3 24.2 232 1-237 1-239 (286)
24 PRK09451 glmU bifunctional N-a 100.0 5E-42 1.1E-46 326.2 31.0 319 1-339 6-350 (456)
25 PRK14357 glmU bifunctional N-a 100.0 4.9E-41 1.1E-45 319.3 34.1 325 1-345 1-345 (448)
26 PRK14354 glmU bifunctional N-a 100.0 7.4E-41 1.6E-45 319.0 35.0 335 1-348 3-358 (458)
27 PRK14360 glmU bifunctional N-a 100.0 7.4E-40 1.6E-44 311.5 35.0 334 1-348 2-355 (450)
28 cd06425 M1P_guanylylT_B_like_N 100.0 1E-39 2.2E-44 283.6 28.5 233 1-234 1-233 (233)
29 TIGR01105 galF UTP-glucose-1-p 100.0 8E-38 1.7E-42 277.7 27.3 229 1-233 4-276 (297)
30 cd06428 M1P_guanylylT_A_like_N 100.0 7E-38 1.5E-42 275.8 25.6 230 3-232 1-256 (257)
31 PF00483 NTP_transferase: Nucl 100.0 4.2E-37 9.1E-42 270.0 24.5 232 2-235 1-247 (248)
32 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.6E-36 3.6E-41 264.6 26.8 228 1-233 1-237 (240)
33 PRK10122 GalU regulator GalF; 100.0 4.7E-36 1E-40 267.3 27.5 229 1-233 4-276 (297)
34 PRK15480 glucose-1-phosphate t 100.0 4.7E-36 1E-40 265.8 27.4 229 1-234 4-241 (292)
35 TIGR01207 rmlA glucose-1-phosp 100.0 1.2E-35 2.5E-40 263.0 26.4 228 2-234 1-237 (286)
36 TIGR02623 G1P_cyt_trans glucos 100.0 3.3E-35 7.2E-40 257.5 27.3 226 2-235 1-246 (254)
37 cd04189 G1P_TT_long G1P_TT_lon 100.0 2.3E-34 5E-39 250.7 27.9 229 1-235 1-235 (236)
38 cd06422 NTP_transferase_like_1 100.0 1.5E-34 3.3E-39 249.1 25.4 218 2-229 1-221 (221)
39 PRK13389 UTP--glucose-1-phosph 100.0 4.8E-34 1E-38 254.7 27.5 229 1-233 9-279 (302)
40 cd06915 NTP_transferase_WcbM_l 100.0 1.1E-33 2.4E-38 244.4 26.7 222 3-229 1-222 (223)
41 cd02541 UGPase_prokaryotic Pro 100.0 9.4E-34 2E-38 251.2 26.2 229 1-233 1-264 (267)
42 cd02524 G1P_cytidylyltransfera 100.0 2.4E-33 5.1E-38 246.3 27.2 226 3-234 1-246 (253)
43 TIGR01099 galU UTP-glucose-1-p 100.0 4.2E-33 9.1E-38 246.1 24.8 225 1-229 1-260 (260)
44 cd06426 NTP_transferase_like_2 100.0 1.5E-32 3.3E-37 236.7 26.1 219 3-230 1-220 (220)
45 cd04181 NTP_transferase NTP_tr 100.0 1.4E-32 3E-37 236.5 25.1 214 3-221 1-217 (217)
46 COG1210 GalU UDP-glucose pyrop 100.0 3.7E-31 8.1E-36 221.4 22.5 230 1-234 5-270 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 1.7E-29 3.7E-34 216.7 20.7 180 1-184 1-217 (217)
48 cd02523 PC_cytidylyltransferas 100.0 1.2E-28 2.6E-33 213.5 21.1 214 3-229 1-228 (229)
49 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 3.5E-28 7.5E-33 211.0 22.4 215 3-226 1-230 (231)
50 cd02508 ADP_Glucose_PP ADP-glu 100.0 2.7E-28 5.8E-33 206.7 17.3 183 3-220 1-200 (200)
51 cd04198 eIF-2B_gamma_N The N-t 99.9 1.2E-26 2.5E-31 198.5 16.8 180 1-184 1-214 (214)
52 cd02507 eIF-2B_gamma_N_like Th 99.9 2.3E-26 4.9E-31 196.9 16.6 180 1-184 1-216 (216)
53 cd02540 GT2_GlmU_N_bac N-termi 99.9 1.4E-25 3E-30 194.5 21.2 212 3-225 1-228 (229)
54 cd02509 GDP-M1P_Guanylyltransf 99.9 1.2E-25 2.5E-30 198.9 17.5 220 1-224 1-272 (274)
55 PRK05450 3-deoxy-manno-octulos 99.9 3.7E-24 8.1E-29 187.4 22.8 217 2-233 4-244 (245)
56 COG1213 Predicted sugar nucleo 99.9 2.3E-24 5E-29 177.6 19.2 222 1-238 4-233 (239)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 5.1E-24 1.1E-28 185.8 22.1 216 1-231 2-238 (239)
58 TIGR01479 GMP_PMI mannose-1-ph 99.9 4.8E-24 1.1E-28 201.5 19.3 226 1-230 1-281 (468)
59 PRK13368 3-deoxy-manno-octulos 99.9 4.3E-22 9.4E-27 173.5 21.4 211 2-231 4-236 (238)
60 COG0836 {ManC} Mannose-1-phosp 99.8 2.9E-19 6.2E-24 153.7 19.1 228 1-230 2-282 (333)
61 COG4750 LicC CTP:phosphocholin 99.8 4.3E-19 9.3E-24 140.2 14.8 213 1-232 1-224 (231)
62 PRK15460 cpsB mannose-1-phosph 99.8 4.8E-19 1E-23 165.9 17.2 227 1-230 6-290 (478)
63 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.8 8.6E-20 1.9E-24 156.0 11.0 140 196-341 31-195 (231)
64 PLN02917 CMP-KDO synthetase 99.8 1.1E-17 2.4E-22 148.7 21.4 216 2-234 49-288 (293)
65 TIGR00454 conserved hypothetic 99.8 2.5E-17 5.5E-22 136.4 17.1 179 1-230 1-181 (183)
66 TIGR00466 kdsB 3-deoxy-D-manno 99.8 1.9E-16 4.1E-21 137.2 20.9 210 3-226 2-237 (238)
67 COG2266 GTP:adenosylcobinamide 99.7 3.3E-16 7.1E-21 123.4 16.8 166 1-234 1-168 (177)
68 PF12804 NTP_transf_3: MobA-li 99.7 4.4E-16 9.5E-21 127.1 13.4 119 3-135 1-121 (160)
69 cd04745 LbH_paaY_like paaY-lik 99.7 1.5E-15 3.2E-20 122.9 14.0 109 242-350 6-123 (155)
70 cd02513 CMP-NeuAc_Synthase CMP 99.7 6.2E-15 1.3E-19 127.1 18.8 204 2-231 3-221 (223)
71 cd05636 LbH_G1P_TT_C_like Puta 99.7 1.9E-15 4.2E-20 123.4 14.8 111 242-352 23-158 (163)
72 COG0663 PaaY Carbonic anhydras 99.7 1E-15 2.2E-20 121.6 12.4 116 241-356 16-139 (176)
73 TIGR02287 PaaY phenylacetic ac 99.7 1.3E-15 2.7E-20 126.5 13.3 109 241-349 13-129 (192)
74 cd02516 CDP-ME_synthetase CDP- 99.7 2E-15 4.4E-20 129.7 15.0 208 2-227 2-216 (218)
75 cd04182 GT_2_like_f GT_2_like_ 99.7 2.5E-15 5.4E-20 125.7 14.9 119 1-130 1-121 (186)
76 TIGR00453 ispD 2-C-methyl-D-er 99.7 3.9E-15 8.5E-20 127.8 15.7 207 2-231 1-215 (217)
77 PRK09382 ispDF bifunctional 2- 99.7 7.2E-15 1.6E-19 134.6 18.2 202 2-233 7-212 (378)
78 TIGR03310 matur_ygfJ molybdenu 99.7 4.4E-15 9.6E-20 124.5 15.4 119 3-132 2-122 (188)
79 PRK00155 ispD 2-C-methyl-D-ery 99.6 1.2E-14 2.7E-19 125.6 17.7 212 1-234 4-223 (227)
80 COG2068 Uncharacterized MobA-r 99.6 2E-14 4.4E-19 116.7 16.5 185 2-233 7-197 (199)
81 cd03350 LbH_THP_succinylT 2,3, 99.6 9.2E-15 2E-19 116.0 14.2 116 244-359 3-133 (139)
82 TIGR00965 dapD 2,3,4,5-tetrahy 99.6 3.1E-15 6.7E-20 128.0 12.2 118 242-360 100-231 (269)
83 PLN02296 carbonate dehydratase 99.6 5.4E-15 1.2E-19 128.7 13.9 107 242-348 58-178 (269)
84 cd04646 LbH_Dynactin_6 Dynacti 99.6 6.9E-15 1.5E-19 119.7 13.7 101 242-342 5-119 (164)
85 PLN02472 uncharacterized prote 99.6 7.4E-15 1.6E-19 126.1 13.7 110 242-351 65-189 (246)
86 PRK13627 carnitine operon prot 99.6 7E-15 1.5E-19 122.5 13.1 104 242-345 16-127 (196)
87 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 1.2E-14 2.6E-19 122.2 13.4 103 246-348 7-109 (193)
88 cd02503 MobA MobA catalyzes th 99.6 2E-14 4.4E-19 119.7 14.6 107 1-125 1-109 (181)
89 COG1212 KdsB CMP-2-keto-3-deox 99.6 1.8E-13 3.8E-18 112.0 18.6 218 3-234 6-243 (247)
90 TIGR03584 PseF pseudaminic aci 99.6 3E-13 6.4E-18 115.9 21.0 203 3-232 2-219 (222)
91 cd05824 LbH_M1P_guanylylT_C Ma 99.6 1.8E-14 3.8E-19 102.9 11.1 79 257-335 2-80 (80)
92 PRK00317 mobA molybdopterin-gu 99.6 6.7E-14 1.5E-18 117.8 16.6 112 1-128 4-117 (193)
93 cd04650 LbH_FBP Ferripyochelin 99.6 3.5E-14 7.5E-19 114.4 14.0 109 242-350 6-123 (154)
94 PRK11830 dapD 2,3,4,5-tetrahyd 99.6 1.7E-14 3.6E-19 124.9 12.6 115 246-360 101-234 (272)
95 cd05636 LbH_G1P_TT_C_like Puta 99.6 3.7E-14 8E-19 115.9 13.8 96 244-340 7-103 (163)
96 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 6.1E-14 1.3E-18 126.4 16.1 123 216-339 66-210 (324)
97 cd03356 LbH_G1P_AT_C_like Left 99.6 2E-14 4.4E-19 102.4 10.4 79 256-335 1-79 (79)
98 TIGR01852 lipid_A_lpxA acyl-[a 99.6 3.4E-14 7.4E-19 124.5 13.9 117 244-360 36-180 (254)
99 PRK00892 lpxD UDP-3-O-[3-hydro 99.6 1.4E-13 3.1E-18 125.8 17.9 85 266-350 142-252 (343)
100 PRK12461 UDP-N-acetylglucosami 99.6 4.2E-14 9.2E-19 122.9 13.5 52 309-360 122-180 (255)
101 cd04652 LbH_eIF2B_gamma_C eIF- 99.6 2.9E-14 6.4E-19 102.0 10.4 79 257-337 2-80 (81)
102 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.6 4.6E-14 1E-18 123.6 13.6 71 290-360 103-181 (254)
103 KOG1461 Translation initiation 99.6 8E-15 1.7E-19 135.9 8.7 99 253-352 314-413 (673)
104 TIGR03570 NeuD_NnaD sugar O-ac 99.6 2.3E-13 5E-18 115.3 17.0 126 215-341 61-188 (201)
105 PRK13385 2-C-methyl-D-erythrit 99.6 1.8E-13 3.8E-18 118.5 16.4 214 2-235 4-225 (230)
106 PRK05289 UDP-N-acetylglucosami 99.6 3.9E-14 8.5E-19 124.2 12.3 38 323-360 140-184 (262)
107 COG1044 LpxD UDP-3-O-[3-hydrox 99.6 5.5E-14 1.2E-18 122.6 12.9 59 247-305 116-181 (338)
108 TIGR02665 molyb_mobA molybdopt 99.5 1.8E-13 4E-18 114.5 15.2 115 1-129 1-117 (186)
109 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 1.3E-13 2.7E-18 116.1 14.2 116 244-360 23-187 (193)
110 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 8.7E-14 1.9E-18 121.9 13.5 96 244-339 19-135 (254)
111 cd03360 LbH_AT_putative Putati 99.5 3E-13 6.5E-18 114.0 16.4 100 242-341 84-185 (197)
112 cd04645 LbH_gamma_CA_like Gamm 99.5 1.2E-13 2.6E-18 111.5 13.3 105 242-346 5-117 (153)
113 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 1.3E-13 2.9E-18 120.2 14.2 17 324-340 202-218 (338)
114 cd00710 LbH_gamma_CA Gamma car 99.5 1.7E-13 3.7E-18 112.1 14.1 109 242-351 8-126 (167)
115 TIGR03202 pucB xanthine dehydr 99.5 9.1E-14 2E-18 116.7 12.4 123 1-129 1-125 (190)
116 cd05787 LbH_eIF2B_epsilon eIF- 99.5 7.4E-14 1.6E-18 99.5 10.0 79 256-335 1-79 (79)
117 PRK02726 molybdopterin-guanine 99.5 4E-13 8.7E-18 113.5 15.6 111 1-127 8-120 (200)
118 cd03352 LbH_LpxD UDP-3-O-acyl- 99.5 2.7E-13 5.8E-18 115.3 14.4 52 309-360 135-193 (205)
119 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 1.7E-13 3.7E-18 123.5 13.8 20 341-360 277-296 (324)
120 PRK05289 UDP-N-acetylglucosami 99.5 1.7E-13 3.8E-18 120.2 13.5 60 245-304 5-65 (262)
121 TIGR03308 phn_thr-fam phosphon 99.5 2.2E-13 4.8E-18 114.6 12.6 97 242-340 8-142 (204)
122 PRK13627 carnitine operon prot 99.5 2.5E-13 5.3E-18 113.2 12.4 102 258-360 14-133 (196)
123 COG0663 PaaY Carbonic anhydras 99.5 1.6E-13 3.5E-18 109.1 10.5 111 248-361 11-135 (176)
124 TIGR01852 lipid_A_lpxA acyl-[a 99.5 5E-13 1.1E-17 117.1 14.3 97 243-339 17-134 (254)
125 cd04745 LbH_paaY_like paaY-lik 99.5 3.7E-13 8.1E-18 108.8 12.3 102 258-360 4-123 (155)
126 cd03359 LbH_Dynactin_5 Dynacti 99.5 5E-13 1.1E-17 108.7 13.0 106 245-350 10-134 (161)
127 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 5E-13 1.1E-17 114.5 13.4 105 256-360 82-203 (231)
128 TIGR02287 PaaY phenylacetic ac 99.5 3E-13 6.6E-18 112.3 11.3 104 256-360 10-131 (192)
129 cd03350 LbH_THP_succinylT 2,3, 99.5 8.7E-13 1.9E-17 104.6 13.3 83 254-339 31-123 (139)
130 TIGR01173 glmU UDP-N-acetylglu 99.5 3.5E-13 7.5E-18 128.7 12.7 117 243-360 268-433 (451)
131 PLN02296 carbonate dehydratase 99.5 5.7E-13 1.2E-17 116.1 12.7 108 250-360 54-181 (269)
132 cd03358 LbH_WxcM_N_like WcxM-l 99.5 4.8E-13 1E-17 103.4 11.0 97 244-341 6-102 (119)
133 cd02518 GT2_SpsF SpsF is a gly 99.5 3.6E-12 7.9E-17 110.6 17.6 186 3-233 2-202 (233)
134 TIGR03308 phn_thr-fam phosphon 99.5 1.2E-12 2.6E-17 110.1 13.4 104 256-360 4-151 (204)
135 cd04646 LbH_Dynactin_6 Dynacti 99.5 9.8E-13 2.1E-17 107.1 12.4 49 258-306 3-55 (164)
136 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 1.1E-12 2.4E-17 119.9 14.0 114 246-359 140-304 (343)
137 PRK14489 putative bifunctional 99.5 2.6E-12 5.7E-17 118.3 16.5 185 1-231 6-195 (366)
138 PLN02728 2-C-methyl-D-erythrit 99.5 5.6E-12 1.2E-16 109.6 17.6 207 2-233 26-244 (252)
139 cd04651 LbH_G1P_AT_C Glucose-1 99.4 6.7E-13 1.5E-17 99.5 9.9 79 261-342 2-80 (104)
140 COG0746 MobA Molybdopterin-gua 99.4 3E-12 6.5E-17 106.3 14.6 110 1-129 5-116 (192)
141 PRK12461 UDP-N-acetylglucosami 99.4 1.2E-12 2.5E-17 113.9 12.6 57 249-305 24-93 (255)
142 PRK14355 glmU bifunctional N-a 99.4 1.3E-12 2.9E-17 124.7 13.9 119 242-361 274-441 (459)
143 cd04652 LbH_eIF2B_gamma_C eIF- 99.4 9.8E-13 2.1E-17 94.0 9.9 78 275-353 2-79 (81)
144 cd03360 LbH_AT_putative Putati 99.4 3E-12 6.4E-17 107.9 14.4 111 245-360 81-193 (197)
145 cd05635 LbH_unknown Uncharacte 99.4 3.1E-12 6.8E-17 95.0 12.2 86 253-341 10-96 (101)
146 KOG1462 Translation initiation 99.4 3.1E-13 6.7E-18 118.6 7.7 91 267-358 329-420 (433)
147 cd03358 LbH_WxcM_N_like WcxM-l 99.4 1.8E-12 3.9E-17 100.1 11.3 100 257-361 1-111 (119)
148 TIGR03570 NeuD_NnaD sugar O-ac 99.4 2.5E-12 5.5E-17 108.9 13.2 111 245-360 84-196 (201)
149 cd04649 LbH_THP_succinylT_puta 99.4 2.7E-12 5.9E-17 99.4 11.8 95 246-344 5-109 (147)
150 PRK09451 glmU bifunctional N-a 99.4 1.5E-12 3.3E-17 124.3 12.8 118 242-360 271-437 (456)
151 cd04650 LbH_FBP Ferripyochelin 99.4 3.4E-12 7.4E-17 102.8 11.8 82 257-339 3-93 (154)
152 PRK00560 molybdopterin-guanine 99.4 1.3E-11 2.7E-16 104.0 15.6 176 2-232 10-190 (196)
153 PRK14353 glmU bifunctional N-a 99.4 3.1E-12 6.8E-17 121.9 13.4 83 250-333 264-347 (446)
154 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 3.9E-12 8.4E-17 109.1 12.4 75 260-334 129-213 (269)
155 PF01128 IspD: 2-C-methyl-D-er 99.4 5.8E-11 1.3E-15 100.7 19.3 207 2-232 2-218 (221)
156 PRK14360 glmU bifunctional N-a 99.4 2.8E-12 6.2E-17 122.3 12.0 104 257-360 316-433 (450)
157 PLN02472 uncharacterized prote 99.4 6E-12 1.3E-16 108.2 12.7 107 251-360 62-188 (246)
158 cd04645 LbH_gamma_CA_like Gamm 99.4 5.5E-12 1.2E-16 101.9 11.5 83 257-340 2-93 (153)
159 cd00710 LbH_gamma_CA Gamma car 99.4 8.3E-12 1.8E-16 102.2 12.3 84 256-340 44-132 (167)
160 COG1043 LpxA Acyl-[acyl carrie 99.4 3.6E-12 7.7E-17 105.2 10.0 63 243-305 4-67 (260)
161 cd03356 LbH_G1P_AT_C_like Left 99.4 5.6E-12 1.2E-16 89.7 9.6 76 274-350 1-77 (79)
162 PRK14356 glmU bifunctional N-a 99.4 6.4E-12 1.4E-16 120.0 12.7 36 325-360 399-441 (456)
163 COG1211 IspD 4-diphosphocytidy 99.3 1.3E-10 2.8E-15 98.1 18.0 210 2-232 6-225 (230)
164 PRK14352 glmU bifunctional N-a 99.3 1.2E-11 2.7E-16 118.7 13.4 73 288-360 356-442 (482)
165 PRK11132 cysE serine acetyltra 99.3 1.6E-11 3.5E-16 106.5 12.2 99 246-350 133-236 (273)
166 cd05787 LbH_eIF2B_epsilon eIF- 99.3 1.2E-11 2.5E-16 88.1 9.5 76 274-350 1-77 (79)
167 PRK14354 glmU bifunctional N-a 99.3 1.5E-11 3.3E-16 117.6 13.1 104 257-360 319-436 (458)
168 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 4.3E-11 9.3E-16 101.7 14.1 29 308-336 116-144 (205)
169 PRK14358 glmU bifunctional N-a 99.3 1.5E-11 3.3E-16 117.7 12.2 97 242-339 276-389 (481)
170 PRK14357 glmU bifunctional N-a 99.3 1.3E-11 2.9E-16 117.6 11.4 57 304-360 356-426 (448)
171 cd04651 LbH_G1P_AT_C Glucose-1 99.3 3.5E-11 7.6E-16 90.2 11.2 78 244-324 3-80 (104)
172 PRK09677 putative lipopolysacc 99.3 1.2E-10 2.6E-15 97.4 15.3 97 253-350 42-173 (192)
173 PLN02694 serine O-acetyltransf 99.3 1.9E-11 4E-16 106.0 10.3 85 254-341 160-247 (294)
174 PRK10502 putative acyl transfe 99.3 3E-11 6.6E-16 100.1 11.0 69 273-341 72-159 (182)
175 TIGR03536 DapD_gpp 2,3,4,5-tet 99.3 9E-11 1.9E-15 101.6 14.0 95 245-341 175-283 (341)
176 cd05635 LbH_unknown Uncharacte 99.3 3.6E-11 7.7E-16 89.3 10.1 79 243-323 18-96 (101)
177 PRK14500 putative bifunctional 99.3 8E-11 1.7E-15 106.7 14.4 107 2-125 162-270 (346)
178 PRK14490 putative bifunctional 99.3 9.3E-11 2E-15 108.3 14.9 107 1-124 175-283 (369)
179 TIGR01172 cysE serine O-acetyl 99.3 4.5E-11 9.8E-16 97.1 11.3 95 250-350 57-156 (162)
180 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 6.3E-11 1.4E-15 102.8 11.3 77 258-334 130-216 (272)
181 PRK09527 lacA galactoside O-ac 99.2 1E-10 2.3E-15 97.7 12.0 35 307-341 132-166 (203)
182 PRK05293 glgC glucose-1-phosph 99.2 7.2E-11 1.6E-15 110.1 11.9 94 245-339 279-379 (380)
183 cd03354 LbH_SAT Serine acetylt 99.2 1.7E-10 3.6E-15 86.2 11.0 82 255-341 3-89 (101)
184 cd03359 LbH_Dynactin_5 Dynacti 99.2 2.2E-10 4.8E-15 93.1 12.4 95 242-341 27-136 (161)
185 PRK10092 maltose O-acetyltrans 99.2 1.7E-10 3.6E-15 95.3 11.6 76 263-341 70-164 (183)
186 cd05824 LbH_M1P_guanylylT_C Ma 99.2 1.5E-10 3.3E-15 82.4 9.3 50 291-341 19-68 (80)
187 PRK14359 glmU bifunctional N-a 99.2 1.3E-10 2.9E-15 110.2 11.6 95 256-352 300-412 (430)
188 cd04647 LbH_MAT_like Maltose O 99.2 2.8E-10 6E-15 86.4 10.6 94 254-348 1-99 (109)
189 TIGR03535 DapD_actino 2,3,4,5- 99.2 2.9E-10 6.4E-15 98.0 11.2 94 243-341 154-258 (319)
190 TIGR03536 DapD_gpp 2,3,4,5-tet 99.2 2.7E-10 5.8E-15 98.7 11.0 17 271-287 223-239 (341)
191 cd03357 LbH_MAT_GAT Maltose O- 99.2 4.2E-10 9.2E-15 92.3 11.6 46 306-352 118-163 (169)
192 cd00208 LbetaH Left-handed par 99.2 2.2E-10 4.8E-15 81.1 8.7 76 256-339 2-77 (78)
193 cd04180 UGPase_euk_like Eukary 99.2 2E-11 4.4E-16 107.0 3.8 157 2-165 2-175 (266)
194 PRK10191 putative acyl transfe 99.2 3.6E-10 7.9E-15 89.3 10.4 35 307-341 93-127 (146)
195 cd04649 LbH_THP_succinylT_puta 99.1 4.7E-10 1E-14 87.1 10.5 45 244-288 15-63 (147)
196 COG1045 CysE Serine acetyltran 99.1 2.2E-10 4.7E-15 92.4 8.8 84 253-341 66-154 (194)
197 PLN02357 serine acetyltransfer 99.1 3.4E-10 7.3E-15 101.0 10.9 37 305-341 277-313 (360)
198 COG1207 GlmU N-acetylglucosami 99.1 2.5E-10 5.4E-15 102.3 8.7 105 257-361 323-441 (460)
199 PRK10191 putative acyl transfe 99.1 9.3E-10 2E-14 87.0 10.9 82 242-323 41-127 (146)
200 COG2171 DapD Tetrahydrodipicol 99.1 4.2E-10 9.1E-15 95.0 9.4 99 243-341 109-217 (271)
201 PLN02241 glucose-1-phosphate a 99.1 7.1E-10 1.5E-14 105.0 11.7 78 259-340 304-400 (436)
202 PRK02862 glgC glucose-1-phosph 99.1 3.7E-10 8.1E-15 106.6 9.8 86 252-341 290-394 (429)
203 PLN02739 serine acetyltransfer 99.1 5.6E-10 1.2E-14 98.8 9.9 36 306-341 257-292 (355)
204 PRK11132 cysE serine acetyltra 99.1 9.8E-10 2.1E-14 95.4 11.0 91 244-341 137-238 (273)
205 TIGR01172 cysE serine O-acetyl 99.1 1.2E-09 2.5E-14 88.8 10.5 79 245-323 58-148 (162)
206 COG1043 LpxA Acyl-[acyl carrie 99.1 1.2E-09 2.7E-14 90.4 9.9 51 291-341 83-141 (260)
207 cd03357 LbH_MAT_GAT Maltose O- 99.1 2.6E-09 5.7E-14 87.6 11.8 18 343-360 144-161 (169)
208 PLN02694 serine O-acetyltransf 99.0 1.6E-09 3.6E-14 94.0 10.9 84 250-341 162-257 (294)
209 PRK09527 lacA galactoside O-ac 99.0 4.4E-09 9.4E-14 88.0 12.7 15 291-305 97-111 (203)
210 PRK10092 maltose O-acetyltrans 99.0 5.8E-09 1.3E-13 86.1 13.2 88 252-341 71-174 (183)
211 TIGR01208 rmlA_long glucose-1- 99.0 1.8E-09 3.8E-14 99.7 10.9 90 243-334 255-352 (353)
212 COG1083 NeuA CMP-N-acetylneura 99.0 1.7E-08 3.7E-13 82.4 15.1 203 3-234 6-223 (228)
213 cd05825 LbH_wcaF_like wcaF-lik 99.0 5E-09 1.1E-13 79.0 11.3 94 254-350 3-99 (107)
214 PRK10502 putative acyl transfe 99.0 2.2E-09 4.8E-14 89.0 10.2 104 244-352 59-177 (182)
215 TIGR02091 glgC glucose-1-phosp 99.0 1.7E-09 3.8E-14 100.1 10.3 78 245-323 280-361 (361)
216 PLN02357 serine acetyltransfer 99.0 2.5E-09 5.5E-14 95.5 10.6 90 249-339 227-328 (360)
217 PRK00725 glgC glucose-1-phosph 99.0 1.7E-09 3.7E-14 102.0 10.0 73 252-326 325-397 (425)
218 COG0448 GlgC ADP-glucose pyrop 99.0 1.6E-09 3.4E-14 97.1 9.1 69 253-324 295-363 (393)
219 PLN02739 serine acetyltransfer 99.0 3E-09 6.4E-14 94.3 10.2 87 248-341 205-302 (355)
220 cd04193 UDPGlcNAc_PPase UDPGlc 99.0 1.4E-08 3E-13 91.4 14.4 160 1-165 16-222 (323)
221 PRK00844 glgC glucose-1-phosph 99.0 2.2E-09 4.7E-14 100.9 9.6 71 251-323 312-382 (407)
222 TIGR03535 DapD_actino 2,3,4,5- 99.0 9.7E-09 2.1E-13 88.7 11.7 92 245-340 150-251 (319)
223 TIGR02092 glgD glucose-1-phosp 99.0 3.2E-09 7E-14 98.6 9.6 75 245-323 281-355 (369)
224 cd03354 LbH_SAT Serine acetylt 98.9 1E-08 2.2E-13 76.5 10.4 79 245-323 5-89 (101)
225 PTZ00339 UDP-N-acetylglucosami 98.9 7.4E-08 1.6E-12 90.6 17.5 183 1-187 107-349 (482)
226 COG1208 GCD1 Nucleoside-diphos 98.9 7.5E-09 1.6E-13 95.0 9.8 60 272-337 296-355 (358)
227 cd05825 LbH_wcaF_like wcaF-lik 98.9 2.2E-08 4.7E-13 75.5 10.2 71 290-360 24-99 (107)
228 cd00208 LbetaH Left-handed par 98.9 1.7E-08 3.6E-13 71.4 8.7 50 290-339 19-71 (78)
229 PLN02474 UTP--glucose-1-phosph 98.9 6.9E-07 1.5E-11 83.4 21.3 181 3-187 82-307 (469)
230 PRK09677 putative lipopolysacc 98.9 4.4E-08 9.5E-13 82.0 12.1 95 253-352 64-183 (192)
231 PF02348 CTP_transf_3: Cytidyl 98.8 5.3E-08 1.1E-12 83.5 12.6 116 3-131 2-120 (217)
232 cd03349 LbH_XAT Xenobiotic acy 98.8 3.9E-08 8.5E-13 78.1 10.4 86 256-341 3-108 (145)
233 cd04647 LbH_MAT_like Maltose O 98.8 2.7E-08 5.9E-13 75.3 9.1 33 251-283 4-38 (109)
234 COG2171 DapD Tetrahydrodipicol 98.8 2.5E-08 5.5E-13 84.4 9.2 79 245-323 129-217 (271)
235 KOG4042 Dynactin subunit p27/W 98.8 6.5E-09 1.4E-13 79.2 4.7 105 248-352 20-141 (190)
236 KOG3121 Dynactin, subunit p25 98.8 1.4E-08 2.9E-13 76.8 6.3 59 289-347 84-142 (184)
237 COG1861 SpsF Spore coat polysa 98.7 2.1E-06 4.5E-11 70.8 16.2 185 1-233 3-204 (241)
238 cd03349 LbH_XAT Xenobiotic acy 98.6 2.6E-07 5.6E-12 73.4 9.5 58 289-356 73-130 (145)
239 COG1045 CysE Serine acetyltran 98.6 4.4E-07 9.6E-12 73.5 10.5 79 245-323 64-154 (194)
240 COG0110 WbbJ Acetyltransferase 98.6 2.7E-07 5.9E-12 77.3 9.0 89 253-341 66-159 (190)
241 cd00897 UGPase_euk Eukaryotic 98.6 3.9E-06 8.4E-11 74.4 16.3 181 3-187 6-231 (300)
242 KOG4042 Dynactin subunit p27/W 98.6 1.2E-07 2.7E-12 72.3 5.3 108 253-360 7-140 (190)
243 KOG1460 GDP-mannose pyrophosph 98.5 2E-07 4.3E-12 79.8 6.8 72 269-341 285-357 (407)
244 KOG4750 Serine O-acetyltransfe 98.5 2.6E-07 5.6E-12 75.7 6.6 81 255-340 149-234 (269)
245 KOG3121 Dynactin, subunit p25 98.5 3.1E-07 6.7E-12 69.6 5.1 92 245-341 42-148 (184)
246 TIGR02353 NRPS_term_dom non-ri 98.4 1.3E-06 2.9E-11 86.9 9.9 73 273-350 617-690 (695)
247 TIGR02353 NRPS_term_dom non-ri 98.4 1.1E-06 2.4E-11 87.5 8.9 65 271-341 130-195 (695)
248 KOG1322 GDP-mannose pyrophosph 98.4 6.9E-07 1.5E-11 77.8 6.1 94 251-350 249-343 (371)
249 COG4801 Predicted acyltransfer 98.2 8.5E-06 1.8E-10 67.3 9.3 109 245-354 6-116 (277)
250 PLN02435 probable UDP-N-acetyl 98.2 2.2E-05 4.7E-10 74.0 12.8 180 3-187 119-362 (493)
251 cd06424 UGGPase UGGPase cataly 98.2 3.6E-05 7.8E-10 68.6 12.4 180 3-186 3-249 (315)
252 PF01704 UDPGP: UTP--glucose-1 98.1 0.00019 4.2E-09 66.9 16.6 181 3-187 59-286 (420)
253 PRK00576 molybdopterin-guanine 98.1 2.1E-05 4.5E-10 65.2 9.3 96 21-127 3-102 (178)
254 COG4284 UDP-glucose pyrophosph 98.1 0.00012 2.6E-09 67.6 13.9 179 3-187 108-337 (472)
255 PRK13412 fkp bifunctional fuco 98.0 8.6E-05 1.9E-09 75.4 13.7 206 104-328 154-393 (974)
256 PF07959 Fucokinase: L-fucokin 98.0 5.6E-05 1.2E-09 70.8 11.1 80 104-187 55-156 (414)
257 PF00132 Hexapep: Bacterial tr 98.0 8.8E-06 1.9E-10 47.9 3.5 32 308-339 3-34 (36)
258 COG4801 Predicted acyltransfer 97.9 3.9E-05 8.5E-10 63.5 7.3 72 273-344 17-88 (277)
259 PLN02830 UDP-sugar pyrophospho 97.8 0.00081 1.7E-08 65.5 14.9 143 3-149 131-322 (615)
260 TIGR03552 F420_cofC 2-phospho- 97.8 0.00094 2E-08 56.1 13.6 87 30-126 29-117 (195)
261 COG0110 WbbJ Acetyltransferase 97.7 0.00025 5.5E-09 59.3 9.4 42 319-360 125-167 (190)
262 KOG4750 Serine O-acetyltransfe 97.7 6.1E-05 1.3E-09 62.1 5.2 36 252-287 152-189 (269)
263 PF00535 Glycos_transf_2: Glyc 96.2 0.046 9.9E-07 43.7 9.5 107 26-136 4-114 (169)
264 cd00761 Glyco_tranf_GTA_type G 96.0 0.12 2.5E-06 40.4 10.7 97 27-127 4-104 (156)
265 PF07959 Fucokinase: L-fucokin 95.7 0.024 5.2E-07 53.3 6.1 98 205-312 226-324 (414)
266 KOG2638 UDP-glucose pyrophosph 95.5 2 4.4E-05 39.5 20.4 130 3-138 106-274 (498)
267 cd06423 CESA_like CESA_like is 94.5 0.65 1.4E-05 37.0 10.8 101 26-129 3-107 (180)
268 cd06427 CESA_like_2 CESA_like_ 94.4 0.77 1.7E-05 39.6 11.6 107 26-135 7-119 (241)
269 cd04195 GT2_AmsE_like GT2_AmsE 94.2 0.92 2E-05 37.7 11.5 100 25-129 3-109 (201)
270 cd04186 GT_2_like_c Subfamily 93.8 1.4 3.1E-05 34.9 11.4 97 26-129 3-103 (166)
271 cd04188 DPG_synthase DPG_synth 93.2 0.95 2.1E-05 38.1 9.8 100 32-134 10-116 (211)
272 COG1920 Predicted nucleotidylt 93.1 1.5 3.2E-05 36.0 9.8 105 1-125 1-111 (210)
273 cd04179 DPM_DPG-synthase_like 92.8 2.2 4.8E-05 34.7 11.3 104 27-134 4-113 (185)
274 cd06439 CESA_like_1 CESA_like_ 92.6 2.7 5.8E-05 36.3 12.1 103 18-126 25-135 (251)
275 cd04196 GT_2_like_d Subfamily 92.2 2.1 4.6E-05 35.7 10.6 101 26-129 4-108 (214)
276 KOG2388 UDP-N-acetylglucosamin 92.0 0.44 9.5E-06 44.6 6.3 62 2-66 99-175 (477)
277 cd06421 CESA_CelA_like CESA_Ce 91.7 3.8 8.2E-05 34.8 11.8 98 26-128 7-112 (234)
278 cd06438 EpsO_like EpsO protein 91.1 3.9 8.4E-05 33.5 10.9 98 26-127 3-108 (183)
279 cd04185 GT_2_like_b Subfamily 91.1 2.6 5.5E-05 35.0 9.9 93 32-126 10-105 (202)
280 cd06442 DPM1_like DPM1_like re 90.5 4.5 9.7E-05 34.1 11.0 104 26-133 3-111 (224)
281 cd02525 Succinoglycan_BP_ExoA 90.2 3.5 7.5E-05 35.4 10.2 95 32-131 13-112 (249)
282 cd06435 CESA_NdvC_like NdvC_li 90.0 4.5 9.8E-05 34.5 10.7 100 26-126 4-110 (236)
283 cd06433 GT_2_WfgS_like WfgS an 89.9 4.5 9.8E-05 33.1 10.4 91 32-129 11-104 (202)
284 cd02520 Glucosylceramide_synth 89.6 5.5 0.00012 33.0 10.6 97 26-125 7-111 (196)
285 cd02510 pp-GalNAc-T pp-GalNAc- 89.5 5.8 0.00013 35.5 11.4 96 32-130 12-113 (299)
286 PF01983 CofC: Guanylyl transf 89.4 0.42 9.2E-06 40.5 3.6 107 1-125 1-113 (217)
287 cd04187 DPM1_like_bac Bacteria 89.2 4.9 0.00011 32.6 9.9 81 47-132 30-111 (181)
288 cd06434 GT2_HAS Hyaluronan syn 88.8 6.5 0.00014 33.4 10.8 89 32-126 14-103 (235)
289 PRK11204 N-glycosyltransferase 88.5 5.3 0.00012 37.7 10.9 101 25-129 59-163 (420)
290 cd06420 GT2_Chondriotin_Pol_N 87.2 6.6 0.00014 31.8 9.4 97 26-125 3-104 (182)
291 PLN02726 dolichyl-phosphate be 86.3 6.1 0.00013 34.1 9.1 104 27-133 16-126 (243)
292 cd04192 GT_2_like_e Subfamily 86.1 7.9 0.00017 32.6 9.7 101 26-130 3-112 (229)
293 PRK13412 fkp bifunctional fuco 85.7 1.8 4E-05 44.9 6.2 68 284-352 331-400 (974)
294 TIGR01556 rhamnosyltran L-rham 85.6 7.7 0.00017 34.3 9.6 92 32-129 8-102 (281)
295 PRK14583 hmsR N-glycosyltransf 85.0 9.2 0.0002 36.5 10.4 101 24-129 79-184 (444)
296 PRK10714 undecaprenyl phosphat 84.8 10 0.00022 34.6 10.1 83 47-133 39-122 (325)
297 TIGR03472 HpnI hopanoid biosyn 84.7 9 0.0002 35.6 10.0 99 25-126 46-152 (373)
298 TIGR03111 glyc2_xrt_Gpos1 puta 83.8 17 0.00036 34.7 11.5 100 25-129 54-160 (439)
299 PF04519 Bactofilin: Polymer-f 83.3 4 8.7E-05 29.9 5.7 16 296-311 37-52 (101)
300 COG1664 CcmA Integral membrane 82.8 9.6 0.00021 30.2 7.8 97 245-346 26-123 (146)
301 PRK10073 putative glycosyl tra 82.6 19 0.00042 32.8 11.0 104 26-134 12-119 (328)
302 PF04519 Bactofilin: Polymer-f 82.4 4.2 9.2E-05 29.8 5.5 92 245-341 5-97 (101)
303 cd04184 GT2_RfbC_Mx_like Myxoc 82.0 22 0.00047 29.2 10.5 93 32-128 15-111 (202)
304 KOG2978 Dolichol-phosphate man 81.8 28 0.0006 28.8 10.1 102 30-134 17-122 (238)
305 TIGR03469 HonB hopene-associat 81.5 18 0.00038 33.8 10.6 108 25-132 45-165 (384)
306 cd02526 GT2_RfbF_like RfbF is 80.1 21 0.00045 30.3 9.9 86 32-122 11-97 (237)
307 cd06437 CESA_CaSu_A2 Cellulose 77.2 21 0.00046 30.2 9.1 94 27-125 8-112 (232)
308 COG1215 Glycosyltransferases, 76.8 26 0.00055 33.1 10.4 102 25-130 59-167 (439)
309 PRK11498 bcsA cellulose syntha 76.7 34 0.00073 35.6 11.4 98 25-130 265-369 (852)
310 cd02511 Beta4Glucosyltransfera 76.4 46 0.001 28.3 10.9 87 32-129 13-100 (229)
311 PTZ00260 dolichyl-phosphate be 74.9 33 0.00072 31.3 10.1 94 31-127 82-189 (333)
312 cd04191 Glucan_BSP_ModH Glucan 73.7 61 0.0013 28.3 12.0 102 25-129 4-124 (254)
313 COG2984 ABC-type uncharacteriz 73.6 68 0.0015 29.0 11.1 95 29-129 140-239 (322)
314 PF13704 Glyco_tranf_2_4: Glyc 73.0 31 0.00068 24.6 8.6 79 32-115 5-85 (97)
315 cd06913 beta3GnTL1_like Beta 1 72.8 55 0.0012 27.3 10.6 96 31-129 9-113 (219)
316 COG0299 PurN Folate-dependent 72.2 18 0.00039 30.0 6.7 97 1-126 1-101 (200)
317 PF13641 Glyco_tranf_2_3: Glyc 70.0 7.3 0.00016 33.0 4.4 98 25-125 6-111 (228)
318 TIGR03030 CelA cellulose synth 69.2 55 0.0012 33.5 11.0 102 25-130 136-258 (713)
319 COG1216 Predicted glycosyltran 69.1 44 0.00094 30.0 9.4 103 29-134 13-118 (305)
320 PF07302 AroM: AroM protein; 68.5 56 0.0012 27.9 9.1 109 3-124 91-199 (221)
321 PRK10063 putative glycosyl tra 67.9 81 0.0018 27.3 11.6 91 32-128 14-109 (248)
322 cd02522 GT_2_like_a GT_2_like_ 66.8 64 0.0014 26.8 9.6 93 26-129 5-101 (221)
323 cd02514 GT13_GLCNAC-TI GT13_GL 63.4 1.2E+02 0.0026 27.7 11.0 106 25-134 5-134 (334)
324 TIGR02990 ectoine_eutA ectoine 62.8 99 0.0021 26.8 9.9 88 33-122 107-201 (239)
325 TIGR00639 PurN phosphoribosylg 62.2 72 0.0016 26.5 8.7 16 1-16 1-16 (190)
326 COG1664 CcmA Integral membrane 61.9 35 0.00076 27.0 6.3 15 296-310 58-72 (146)
327 PRK05647 purN phosphoribosylgl 59.9 50 0.0011 27.7 7.4 16 1-16 2-17 (200)
328 PRK10018 putative glycosyl tra 59.7 91 0.002 27.7 9.4 95 27-127 12-112 (279)
329 PF10111 Glyco_tranf_2_2: Glyc 56.8 1.4E+02 0.003 26.4 11.2 83 38-123 23-111 (281)
330 COG0381 WecB UDP-N-acetylgluco 56.1 24 0.00053 32.6 5.2 90 25-115 7-105 (383)
331 PRK13915 putative glucosyl-3-p 54.6 1.6E+02 0.0035 26.5 10.3 94 32-128 44-144 (306)
332 cd06436 GlcNAc-1-P_transferase 52.5 1.3E+02 0.0028 24.6 10.0 96 31-126 9-115 (191)
333 PRK10481 hypothetical protein; 52.3 1.5E+02 0.0033 25.4 10.5 86 33-124 118-203 (224)
334 PF00583 Acetyltransf_1: Acety 50.6 31 0.00068 23.4 4.1 37 30-66 43-79 (83)
335 cd01025 TOPRIM_recR TOPRIM_rec 49.6 1.1E+02 0.0024 23.0 7.0 48 33-80 44-93 (112)
336 PF09837 DUF2064: Uncharacteri 47.6 30 0.00065 26.4 3.8 84 37-127 1-87 (122)
337 PLN02331 phosphoribosylglycina 47.5 1.3E+02 0.0027 25.5 7.8 15 2-16 1-15 (207)
338 KOG2977 Glycosyltransferase [G 46.8 1.6E+02 0.0034 26.3 8.3 89 33-124 85-181 (323)
339 PRK05454 glucosyltransferase M 45.4 3.1E+02 0.0068 28.0 11.5 105 24-129 128-249 (691)
340 PF05060 MGAT2: N-acetylglucos 44.8 47 0.001 30.5 5.1 55 12-66 23-81 (356)
341 PF01936 NYN: NYN domain; Int 44.5 1.3E+02 0.0029 23.1 7.3 100 32-136 20-126 (146)
342 PF13712 Glyco_tranf_2_5: Glyc 42.0 2.2E+02 0.0047 24.2 8.8 58 74-134 30-89 (217)
343 PRK00923 sirohydrochlorin coba 40.8 47 0.001 25.3 4.0 23 30-52 44-66 (126)
344 PRK13010 purU formyltetrahydro 40.5 1.6E+02 0.0034 26.4 7.7 9 104-112 171-179 (289)
345 TIGR00236 wecB UDP-N-acetylglu 39.2 80 0.0017 29.0 6.1 77 33-112 15-96 (365)
346 TIGR02638 lactal_redase lactal 38.2 2.1E+02 0.0045 26.7 8.6 85 30-114 13-99 (379)
347 KOG3738 Predicted polypeptide 38.0 3.5E+02 0.0076 25.5 9.7 147 31-188 137-309 (559)
348 PF14134 DUF4301: Domain of un 37.7 3E+02 0.0065 26.7 9.3 62 20-81 165-242 (513)
349 cd04190 Chitin_synth_C C-termi 37.3 2.3E+02 0.0051 24.2 8.4 29 101-129 73-102 (244)
350 PF02633 Creatininase: Creatin 33.8 1E+02 0.0022 26.5 5.4 46 33-78 87-135 (237)
351 PF10087 DUF2325: Uncharacteri 31.9 1.9E+02 0.0042 20.7 8.3 73 49-130 2-76 (97)
352 PF01713 Smr: Smr domain; Int 31.7 1.6E+02 0.0035 20.3 5.3 37 32-68 13-53 (83)
353 cd08190 HOT Hydroxyacid-oxoaci 31.6 3.4E+02 0.0074 25.7 9.0 80 30-113 7-92 (414)
354 TIGR00615 recR recombination p 31.5 1.7E+02 0.0037 24.5 6.0 47 33-79 122-170 (195)
355 cd08176 LPO Lactadehyde:propan 31.5 3.3E+02 0.0071 25.3 8.8 83 30-113 12-97 (377)
356 cd08189 Fe-ADH5 Iron-containin 31.4 3.5E+02 0.0076 25.1 8.9 84 30-114 10-96 (374)
357 KOG2638 UDP-glucose pyrophosph 30.9 75 0.0016 29.8 4.1 14 293-306 451-464 (498)
358 COG1454 EutG Alcohol dehydroge 30.9 3.5E+02 0.0076 25.3 8.6 79 30-112 13-97 (377)
359 PLN02828 formyltetrahydrofolat 30.6 73 0.0016 28.1 3.9 9 221-229 228-236 (268)
360 TIGR00655 PurU formyltetrahydr 29.1 1.5E+02 0.0033 26.3 5.8 9 104-112 162-170 (280)
361 cd08182 HEPD Hydroxyethylphosp 28.8 4.4E+02 0.0096 24.3 9.2 78 30-112 7-88 (367)
362 PRK14716 bacteriophage N4 adso 28.5 5.3E+02 0.011 25.3 9.7 97 25-121 71-179 (504)
363 cd08551 Fe-ADH iron-containing 28.3 4.5E+02 0.0097 24.3 9.1 85 30-114 7-93 (370)
364 cd08192 Fe-ADH7 Iron-containin 28.2 4.4E+02 0.0095 24.4 9.0 84 30-114 8-94 (370)
365 PF00551 Formyl_trans_N: Formy 27.3 2.4E+02 0.0052 23.0 6.4 39 1-59 1-41 (181)
366 cd08194 Fe-ADH6 Iron-containin 27.2 5E+02 0.011 24.1 9.2 83 30-112 7-91 (375)
367 cd07039 TPP_PYR_POX Pyrimidine 26.7 3.3E+02 0.0072 21.8 7.9 43 34-79 3-45 (164)
368 TIGR00285 DNA-binding protein 26.0 1.1E+02 0.0024 21.7 3.5 30 26-55 4-35 (87)
369 COG0552 FtsY Signal recognitio 25.9 4.5E+02 0.0098 24.1 8.1 78 22-102 139-222 (340)
370 KOG2791 N-acetylglucosaminyltr 25.8 1.2E+02 0.0027 27.5 4.5 44 23-66 120-167 (455)
371 PRK13844 recombination protein 25.8 2.5E+02 0.0054 23.6 6.0 46 33-79 126-173 (200)
372 cd01132 F1_ATPase_alpha F1 ATP 25.6 3.7E+02 0.008 23.9 7.4 82 30-112 81-170 (274)
373 cd08188 Fe-ADH4 Iron-containin 25.2 5.2E+02 0.011 24.0 9.0 84 30-113 12-97 (377)
374 PF02273 Acyl_transf_2: Acyl t 24.4 1E+02 0.0022 26.9 3.5 55 3-57 32-111 (294)
375 KOG2862 Alanine-glyoxylate ami 24.2 5.5E+02 0.012 23.4 13.1 115 69-189 112-228 (385)
376 cd03413 CbiK_C Anaerobic cobal 24.0 1.1E+02 0.0023 22.5 3.3 23 30-52 40-62 (103)
377 cd08185 Fe-ADH1 Iron-containin 23.6 5.9E+02 0.013 23.6 9.0 82 30-113 10-95 (380)
378 COG0463 WcaA Glycosyltransfera 23.6 3.7E+02 0.008 21.2 7.5 87 32-123 16-105 (291)
379 cd08193 HVD 5-hydroxyvalerate 23.4 6E+02 0.013 23.5 9.0 84 30-113 10-95 (376)
380 PRK10624 L-1,2-propanediol oxi 23.4 5.6E+02 0.012 23.9 8.8 82 30-112 14-98 (382)
381 PRK04946 hypothetical protein; 23.1 1.6E+02 0.0035 24.3 4.5 39 32-70 110-148 (181)
382 PF00056 Ldh_1_N: lactate/mala 22.9 93 0.002 24.3 3.0 60 2-66 71-130 (141)
383 PF05679 CHGN: Chondroitin N-a 22.1 7.5E+02 0.016 24.1 9.6 91 25-117 252-357 (499)
384 PF13727 CoA_binding_3: CoA-bi 21.8 1.8E+02 0.0038 23.0 4.6 50 28-78 121-174 (175)
385 PF02641 DUF190: Uncharacteriz 21.6 1.5E+02 0.0033 21.6 3.7 28 28-55 16-43 (101)
386 PRK00076 recR recombination pr 21.2 3.4E+02 0.0073 22.7 6.0 45 34-79 123-169 (196)
387 PRK09860 putative alcohol dehy 21.0 5.2E+02 0.011 24.1 8.1 78 30-112 15-99 (383)
388 PF10662 PduV-EutP: Ethanolami 20.8 1.7E+02 0.0037 23.0 4.0 33 33-65 107-142 (143)
389 TIGR00962 atpA proton transloc 20.2 3.7E+02 0.008 26.3 6.9 82 30-112 173-262 (501)
No 1
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=9.2e-66 Score=435.97 Aligned_cols=361 Identities=59% Similarity=0.979 Sum_probs=341.8
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChH-HHHHHHHHhhhccCcEEEEec
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~-~~~~~l~~~~~~~~~~i~~~~ 79 (361)
|+|+||.+|.|+||+|||...|||+.|++|+|||++++++|.++|+++|++.+++..+ ..++..+.|..++|+++.+..
T Consensus 10 vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~ 89 (371)
T KOG1322|consen 10 VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILAST 89 (371)
T ss_pred eeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEe
Confidence 7899999999999999999999999999999999999999999999999999999877 445555668788899999999
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK 159 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (361)
+.++.|+++.+..+++++....+.+|+|+++|+++..+++++++.|+++++++++++++.++++.||++..|+++|+|.+
T Consensus 90 eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~ 169 (371)
T KOG1322|consen 90 ETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIR 169 (371)
T ss_pred ccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeE
Confidence 99999999999999998754333389999999999999999999999999999999999999999999999997799999
Q ss_pred eeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHHHHhhhh
Q 018060 160 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239 (361)
Q Consensus 160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~~~~ 239 (361)
|.|||..+.++..++|+|+|+++++++++..+.+++.+.+|.++...+++++.++|||.|+++|+||+++.++|+.....
T Consensus 170 F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~ptSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~ 249 (371)
T KOG1322|consen 170 FVEKPKDLVSNKINAGIYILNPEVLDRILLRPTSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPK 249 (371)
T ss_pred ehhCchhhhhccccceEEEECHHHHhHhhhcccchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999998888
Q ss_pred cccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCc
Q 018060 240 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 319 (361)
Q Consensus 240 ~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~ 319 (361)
..++.+.+++.+.+++.+++.+.+|++|.|+++++||++|+|+++++|.+|.|+.+.+++.++.|..++++.++.||.|+
T Consensus 250 ~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~ 329 (371)
T KOG1322|consen 250 YTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA 329 (371)
T ss_pred cCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce
Confidence 77888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCceEECCCeEECCceEEcCcEEccCceeecccCCCcccC
Q 018060 320 RVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 361 (361)
Q Consensus 320 ~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~~~~~~ 361 (361)
.|.+.+++|+|+.|.+.-.++++.+.|.+.....++++++||
T Consensus 330 ~id~~a~lG~nV~V~d~~~vn~g~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 330 RIDKNAVLGKNVIVADEDYVNEGSGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred EEecccEeccceEEecccccccceeEEeccceeecccccccC
Confidence 999999999999999999999999999999999999999986
No 2
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-57 Score=409.99 Aligned_cols=336 Identities=40% Similarity=0.666 Sum_probs=295.9
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|+|||||||+|+||+|+|..+||||+|++|+|||+|+|++|.++|++++++.+++..+.+++++.+ ...++.++.+..+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d-~~~~~~~I~y~~e 80 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGD-GEGLGVRITYVVE 80 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhc-ccccCCceEEEec
Confidence 899999999999999999999999999999999999999999999999999999999999999987 2445788999999
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF 160 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (361)
..+.|++++++.+.+.+. . ++|++++||.+++.++.++++.|+++.+.++++.....++..||.+..+.++++|.+|
T Consensus 81 ~~~lGTag~l~~a~~~l~--~-~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f 157 (358)
T COG1208 81 KEPLGTAGALKNALDLLG--G-DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEF 157 (358)
T ss_pred CCcCccHHHHHHHHHhcC--C-CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEE
Confidence 999999999999999994 3 4899999999999999999999999977788888888888889999988543699999
Q ss_pred eecCC--CCCCCeEEEEEEEeCHhhHhhcc-CCCCccccchHHhHHhcCc-eEEEEecceEEEcCCHHHHHHHHHHHHHh
Q 018060 161 VEKPK--LFVGNKINAGIYLLNPAVLDRIE-LRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIGQPRDYITGLRLYLDS 236 (361)
Q Consensus 161 ~ek~~--~~~~~~~~~Giyi~~~~~l~~l~-~~~~~~~~d~l~~l~~~~~-i~~~~~~~~~~~i~t~~dy~~a~~~~l~~ 236 (361)
.|||. ...++++++|+|+|++++|+++. ....++..++++.++++++ ++++.++++|.|+++|+||+++++.++..
T Consensus 158 ~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~ 237 (358)
T COG1208 158 REKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237 (358)
T ss_pred EecCCCCCCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence 99994 56778999999999999999775 4456677789999999998 99999999999999999999999988864
Q ss_pred hhhccccc-------ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEE
Q 018060 237 LRKKSSLK-------LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSII 309 (361)
Q Consensus 237 ~~~~~~~~-------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i 309 (361)
........ +.. +.+.++++|++++.|++++.|+++++||++|+|+++++|.+|+|+++|.|+++++|.+|+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi 316 (358)
T COG1208 238 DGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSII 316 (358)
T ss_pred cccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEE
Confidence 43321111 223 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060 310 GWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 348 (361)
Q Consensus 310 ~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~ 348 (361)
+.+|.||++. .+|+ ++++.++.+..+.+++..
T Consensus 317 ~~~~~ig~~~------~i~d-~~~g~~~~i~~g~~~~~~ 348 (358)
T COG1208 317 GENCKIGASL------IIGD-VVIGINSEILPGVVVGPG 348 (358)
T ss_pred cCCcEECCce------eecc-eEecCceEEcCceEeCCC
Confidence 9999999922 2777 777777777655554443
No 3
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-53 Score=356.22 Aligned_cols=359 Identities=40% Similarity=0.724 Sum_probs=323.4
Q ss_pred eEEEEecC--CCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEe
Q 018060 2 KALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS 78 (361)
Q Consensus 2 ~avIla~G--~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~ 78 (361)
+||||.+| +|+||+||+.+.||+|.|++|+|||+|-|+.+.+. |..+|+++-=++.+.+.+|+.+....+.+.+.|.
T Consensus 4 ~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL 83 (407)
T KOG1460|consen 4 KAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYL 83 (407)
T ss_pred EEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhh
Confidence 69999999 79999999999999999999999999999999886 6899999888888889999998777888899999
Q ss_pred cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCceeEEEcCCCCe
Q 018060 79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGK 156 (361)
Q Consensus 79 ~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~~~~~~ 156 (361)
.+..+.|+++.++..++.+-...++.++++++|.-..++++++++.|++++..+++++++. +...+||.+..|++|++
T Consensus 84 ~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~e 163 (407)
T KOG1460|consen 84 REDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGE 163 (407)
T ss_pred ccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCc
Confidence 9999999999999999887666777999999999999999999999999999999998886 45678999999988899
Q ss_pred EeeeeecCCCCCCCeEEEEEEEeCHhhHhhccC--------------------CCC---ccccchHHhHHhcCceEEEEe
Q 018060 157 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL--------------------RPT---SIEKEVFPKIALEGKLFAMVL 213 (361)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~--------------------~~~---~~~~d~l~~l~~~~~i~~~~~ 213 (361)
|+++.|||+.+.++..++|+|+|++++|+.+.+ .+. .++.|+++.|+.++++++|..
T Consensus 164 vlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t 243 (407)
T KOG1460|consen 164 VLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYET 243 (407)
T ss_pred eEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEec
Confidence 999999999999999999999999999975521 012 234589999999999999999
Q ss_pred cceEEEcCCHHHHHHHHHHHHHhhhhccccccc----CCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec
Q 018060 214 PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLA----TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR 289 (361)
Q Consensus 214 ~~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~----~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~ 289 (361)
+++|..+.|+-.-+.+++.+|..+.+.....+. ..++|.++++|+|++++++.++||+|+.||.+++||+++++.+
T Consensus 244 ~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~ 323 (407)
T KOG1460|consen 244 TDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRE 323 (407)
T ss_pred ccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeee
Confidence 999999999999999999999877664443332 2357999999999999999999999999999999999999999
Q ss_pred eEEccCcEECCCCEEeccEEcCCCEECCCcEEcC-------------ceEECCCeEECCceEEcCcEEccCceeecccCC
Q 018060 290 CTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------------MTILGEDVHVCDEIYSNGGVVLPHKEIKSSILK 356 (361)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------------~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~ 356 (361)
|+|.++|+|.+|+++-+|+||.++.||.|+.+.. -++.|++|.+++.+.+.++.+.|++++.....+
T Consensus 324 sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k~l~vs~~~ 403 (407)
T KOG1460|consen 324 SIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNKELNVSVQD 403 (407)
T ss_pred eeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCCccceeeec
Confidence 9999999999999999999999999999999875 378999999999999999999999999998887
Q ss_pred CcccC
Q 018060 357 PEIVM 361 (361)
Q Consensus 357 ~~~~~ 361 (361)
+|||
T Consensus 404 -eIil 407 (407)
T KOG1460|consen 404 -EIIL 407 (407)
T ss_pred -ceeC
Confidence 6664
No 4
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4.6e-52 Score=386.47 Aligned_cols=333 Identities=26% Similarity=0.386 Sum_probs=243.9
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccC-------
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLG------- 72 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~------- 72 (361)
|+|||||||+|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++++|++++..+.+++|+.+. .+|+
T Consensus 4 m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 82 (380)
T PRK05293 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLDRINGG 82 (380)
T ss_pred EEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-CcccccCCCCC
Confidence 7999999999999999999999999999999 899999999999999999999999999999999752 2233
Q ss_pred cEEE--EecCCC---CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCc
Q 018060 73 IKII--CSQETE---PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKY 145 (361)
Q Consensus 73 ~~i~--~~~~~~---~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~ 145 (361)
+.+. +..+.+ ..|++++++.+.+.+....+++|++++||++++.++.++++.|.++++++++++... +++..|
T Consensus 83 ~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~y 162 (380)
T PRK05293 83 VTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRF 162 (380)
T ss_pred EEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhcccc
Confidence 3332 333332 379999999999998532234899999999999999999999988888887776543 567889
Q ss_pred eeEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhc-cC------CCCccccchHHhHHhcC-ceEEEEecceE
Q 018060 146 GVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-EL------RPTSIEKEVFPKIALEG-KLFAMVLPGFW 217 (361)
Q Consensus 146 ~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l-~~------~~~~~~~d~l~~l~~~~-~i~~~~~~~~~ 217 (361)
|.+..+++ ++|.++.|||....+++.++|+|+|+++++..+ .. ...++..|+++.+++++ +++++..+++|
T Consensus 163 G~v~~d~~-g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w 241 (380)
T PRK05293 163 GIMNTDEN-MRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYW 241 (380)
T ss_pred CEEEECCC-CcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEE
Confidence 99998876 899999999987678899999999999988543 21 12245568999998764 69999999999
Q ss_pred EEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcE
Q 018060 218 MDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR 297 (361)
Q Consensus 218 ~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~ 297 (361)
.|++++++|+++++.++...... ....+...+.+.+.+.+.+.|++++.| .++.||++|+|+. .+.+|+|+++|.
T Consensus 242 ~digt~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v~~s~ig~~~~ 316 (380)
T PRK05293 242 KDVGTIESLWEANMELLRPENPL--NLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TVEHSVLFQGVQ 316 (380)
T ss_pred EeCCCHHHHHHHHHHHcCCCchh--hhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--eecceEEcCCCE
Confidence 99999999999998777532211 011122222333333344444444444 3455555555543 345566666666
Q ss_pred ECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 298 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 298 i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
||++|+|.+|+|++++.|++++.|.+ |+|++++.|++++.+.+
T Consensus 317 I~~~~~i~~svi~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~ 359 (380)
T PRK05293 317 VGEGSVVKDSVIMPGAKIGENVVIER-AIIGENAVIGDGVIIGG 359 (380)
T ss_pred ECCCCEEECCEEeCCCEECCCeEEeE-EEECCCCEECCCCEEcC
Confidence 66666666666666666666666655 66666666666655544
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.9e-50 Score=376.04 Aligned_cols=336 Identities=21% Similarity=0.320 Sum_probs=240.9
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hhh-ccCcE-EE
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEA-KLGIK-II 76 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~~-~~~~~-i~ 76 (361)
|+|||||||+|+||+|||..+||+|+|++|+ |||+|+|++|.++|+++|++++++..+.+.+|+.+ |.. ..... +.
T Consensus 6 ~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK00844 6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYIT 85 (407)
T ss_pred eEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEE
Confidence 6899999999999999999999999999999 99999999999999999999999999999999964 211 11111 21
Q ss_pred EecCC------CCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCceeE
Q 018060 77 CSQET------EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVV 148 (361)
Q Consensus 77 ~~~~~------~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v 148 (361)
..++. ...|++++++.+.+++.+...++|++++||++++.++.+++++|.++++++++++.+. +++..||++
T Consensus 86 ~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv 165 (407)
T PRK00844 86 PVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVI 165 (407)
T ss_pred ECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEE
Confidence 11211 1479999999999998543334699999999999999999999998888888887653 567789999
Q ss_pred EEcCCCCeEeeeeecCCCCC-------CCeEEEEEEEeCHhhH-hhccC------CCCccccchHHhHHhcCceEEEEe-
Q 018060 149 VMEESTGKVEKFVEKPKLFV-------GNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGKLFAMVL- 213 (361)
Q Consensus 149 ~~~~~~~~v~~~~ek~~~~~-------~~~~~~Giyi~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~~i~~~~~- 213 (361)
.+|++ ++|..+.|||.... +.++++|+|+|++++| +.+.. ...++..|+++.+++++.+++|.+
T Consensus 166 ~~d~~-g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~ 244 (407)
T PRK00844 166 EVDPD-GRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFS 244 (407)
T ss_pred EECCC-CCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcc
Confidence 99886 89999999986432 4689999999999986 44542 234556799999999988999865
Q ss_pred -----------cceEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEE-CCC--cEECCCcEECCCC
Q 018060 214 -----------PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQI-GEG--CLIGPDVAVGPGC 279 (361)
Q Consensus 214 -----------~~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~--~~i~~~~~ig~~~ 279 (361)
+|+|.|+++|++|+++++.+++...... ...+...+.+.....+.+.+ +.. ..+.++++||++|
T Consensus 245 ~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~ 322 (407)
T PRK00844 245 TNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFN--LYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGS 322 (407)
T ss_pred cccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccc--cCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCC
Confidence 5899999999999999999886422110 00000011110111111111 111 1122455666666
Q ss_pred EECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 280 VVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 280 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
.|+ ++.|.+|+|+++|.|+++|+|++|+|+++|.|+++|.|.+ ++|++++.|++++++.+
T Consensus 323 ~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 323 IIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR-AILDKNVVVPPGATIGV 382 (407)
T ss_pred EEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe-eEECCCCEECCCCEECC
Confidence 665 5666666666666666666666666666666666666665 66666666666665544
No 6
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=1.8e-49 Score=365.30 Aligned_cols=330 Identities=30% Similarity=0.486 Sum_probs=276.9
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEecC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
+|||||||+|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++ ..+.+.+++.+ ...+++++.+..+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 79 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYIVQ 79 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEEEC
Confidence 689999999999999999999999999999999999999999999999999999 88899999875 2345667777767
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF 160 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (361)
..+.|++++++.+.+.+. + +++++++||++++.++.++++.|.++++++++++.+..++..|+.+..+++ ++|.++
T Consensus 80 ~~~~G~~~al~~a~~~l~--~-~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~-~~v~~~ 155 (353)
T TIGR01208 80 GEPLGLAHAVYTARDFLG--D-DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDG-KRILKL 155 (353)
T ss_pred CCCCCHHHHHHHHHHhcC--C-CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCC-CcEEEE
Confidence 777899999999999883 3 379999999999999999999999888888888888778888998888654 789999
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060 161 VEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYL 234 (361)
Q Consensus 161 ~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~~l 234 (361)
.|||....+++.++|+|+|++.+++.+.+. ......++++.+++++ ++++|.++++|.++++|+||+++++.++
T Consensus 156 ~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll 235 (353)
T TIGR01208 156 VEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLIL 235 (353)
T ss_pred EECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHH
Confidence 999987778899999999999888877421 2222357889998776 6999999999999999999999999998
Q ss_pred HhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCC
Q 018060 235 DSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHS 313 (361)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~ 313 (361)
++...... .+.+.+.+.++++|++++.| .++.|.++++||++|.|+.. .|. +|+|+++|.|+ ++.|.+|+|++++
T Consensus 236 ~~~~~~~~-~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~-~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~ 311 (353)
T TIGR01208 236 DEVEREVQ-GVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENS-YIGPYTSIGEGVVIR-DAEVEHSIVLDES 311 (353)
T ss_pred hhcccccC-CcCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCc-EECCCCEECCCCEEe-eeEEEeeEEcCCC
Confidence 75432221 25667788888888888888 78888778888888888743 444 67777777776 6778889999999
Q ss_pred EECCCc-EEcCceEECCCeEECCceEEcC
Q 018060 314 TVGQWA-RVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 314 ~ig~~~-~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
.|+.++ .+.+ +++|+++.|++++.+.+
T Consensus 312 ~i~~~~~~~~~-~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 312 VIEGVQARIVD-SVIGKKVRIKGNRRRPG 339 (353)
T ss_pred EEcCCcceeec-CEEcCCCEECCCccccc
Confidence 998884 7765 99999999999988863
No 7
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-50 Score=357.14 Aligned_cols=333 Identities=26% Similarity=0.440 Sum_probs=283.9
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcc-hHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH---hh-h--ccCcE
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE---FE-A--KLGIK 74 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~p-li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~---~~-~--~~~~~ 74 (361)
-|+|||+|+|+||.|||+.++||-+|++||. ||+++|.++.++|+.+|.|+++++...+.+|+.. |. . ..++.
T Consensus 7 laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~v~ 86 (393)
T COG0448 7 LAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGGVF 86 (393)
T ss_pred EEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccCcEE
Confidence 4899999999999999999999999999997 9999999999999999999999988899999986 31 1 11233
Q ss_pred EEEec-----CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCcee
Q 018060 75 IICSQ-----ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGV 147 (361)
Q Consensus 75 i~~~~-----~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~ 147 (361)
+..-. .....|+++++++.+..+.+.++|+++++.||+++..|+++++++|.+.++++|+++.+. ++++.+|+
T Consensus 87 ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGi 166 (393)
T COG0448 87 ILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGV 166 (393)
T ss_pred EeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCc
Confidence 32211 123468999999999888877888999999999999999999999999999999999987 56678999
Q ss_pred EEEcCCCCeEeeeeecCCC-CCCC-eEEEEEEEeCHhhHhhcc-------CCCCccccchHHhHHhcCceEEEEecceEE
Q 018060 148 VVMEESTGKVEKFVEKPKL-FVGN-KINAGIYLLNPAVLDRIE-------LRPTSIEKEVFPKIALEGKLFAMVLPGFWM 218 (361)
Q Consensus 148 v~~~~~~~~v~~~~ek~~~-~~~~-~~~~Giyi~~~~~l~~l~-------~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~ 218 (361)
+..|++ ++|.+|.|||.. +.++ +.++|+|+|++++|..+. ....+|..+++|.++..+.+++|+++|||.
T Consensus 167 m~~D~~-~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~ 245 (393)
T COG0448 167 MNVDEN-GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWR 245 (393)
T ss_pred eEECCC-CCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchhh
Confidence 999997 999999999987 4444 899999999999886552 123578889999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhhhhccccc-ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcE
Q 018060 219 DIGQPRDYITGLRLYLDSLRKKSSLK-LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR 297 (361)
Q Consensus 219 ~i~t~~dy~~a~~~~l~~~~~~~~~~-~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~ 297 (361)
|++|.++|+++|..+++ ....-. ..++-.|......-|.+++..++.+ .+|.|+.+|+|.. .|.||+|+.++.
T Consensus 246 dVgTi~syy~aNmdLl~---~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~ 319 (393)
T COG0448 246 DVGTIDSYYEANMDLLS---PQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVR 319 (393)
T ss_pred hcccHHHHHHhhHHhcC---CCCcccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeE
Confidence 99999999999998876 111122 2344456666667777777777777 6999999999988 899999999999
Q ss_pred ECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060 298 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 342 (361)
Q Consensus 298 i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~ 342 (361)
|+++|+|.+|+|++++.||.+|.|.. ++|.++|+|++|+++.+.
T Consensus 320 I~~gs~i~~svim~~~~IG~~~~l~~-aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 320 IGKGSVIENSVIMPDVEIGEGAVLRR-AIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred ECCCCEEEeeEEeCCcEECCCCEEEE-EEeCCCcEeCCCcEEcCC
Confidence 99999999999999999999999998 999999999999999765
No 8
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=8.1e-49 Score=367.85 Aligned_cols=319 Identities=24% Similarity=0.393 Sum_probs=239.7
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hh-hcc--C-cE
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE-AKL--G-IK 74 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~-~~~--~-~~ 74 (361)
|+|||||||+|+||+|||..+||+|+|++|+ |||+|+|+++.++|+++++|++++..+.+++|+.+ |. ..+ + +.
T Consensus 4 ~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~ 83 (429)
T PRK02862 4 VLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVE 83 (429)
T ss_pred EEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEE
Confidence 4799999999999999999999999999999 99999999999999999999999988999999974 21 111 2 22
Q ss_pred EEEecCCC-----CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCcee
Q 018060 75 IICSQETE-----PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGV 147 (361)
Q Consensus 75 i~~~~~~~-----~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~ 147 (361)
+....+.. ..|++++++.+.+.+....+++|++++||++++.++.++++.|++.++++++++.+. +++..||+
T Consensus 84 i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~ 163 (429)
T PRK02862 84 VLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGL 163 (429)
T ss_pred EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceE
Confidence 32222211 269999999999988543345899999999999999999999998888888887655 45778999
Q ss_pred EEEcCCCCeEeeeeecCCCC---------------------CCCeEEEEEEEeCHhhHhhc-cCC--CCccccchHHhHH
Q 018060 148 VVMEESTGKVEKFVEKPKLF---------------------VGNKINAGIYLLNPAVLDRI-ELR--PTSIEKEVFPKIA 203 (361)
Q Consensus 148 v~~~~~~~~v~~~~ek~~~~---------------------~~~~~~~Giyi~~~~~l~~l-~~~--~~~~~~d~l~~l~ 203 (361)
+.++++ +++..+.|||... ...+.++|+|+|++++|..+ ... ..++..|+++.++
T Consensus 164 i~~d~~-g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~ 242 (429)
T PRK02862 164 MKTDDD-GRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAI 242 (429)
T ss_pred EEECCC-CcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHh
Confidence 999876 8999999998631 23578999999999999644 332 2345578999998
Q ss_pred hcCceEEEEecceEEEcCCHHHHHHHHHHHHHhhhhccc-----------ccccC-----CcEEecceEEcCCCEECCCc
Q 018060 204 LEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSS-----------LKLAT-----GANIVGNVLVHESAQIGEGC 267 (361)
Q Consensus 204 ~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~~~~~~~-----------~~~~~-----~~~i~~~~~i~~~~~i~~~~ 267 (361)
.+++++++.++++|.|+++|++|+++++.++........ ....+ ++.+ .+++|++++.| +++
T Consensus 243 ~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~-~~~~ig~~~~i-~~~ 320 (429)
T PRK02862 243 RDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATI-TESIIAEGCII-KNC 320 (429)
T ss_pred ccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEE-EeCEECCCCEE-CCc
Confidence 888999999999999999999999999987732211100 00111 2222 23566666666 566
Q ss_pred EECCCcEECCCCEECCCcEEeceEEcc-------------------CcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060 268 LIGPDVAVGPGCVVESGVRLSRCTVMR-------------------GVRIKKHACISSSIIGWHSTVGQWARVEN 323 (361)
Q Consensus 268 ~i~~~~~ig~~~~i~~~~~i~~~~i~~-------------------~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 323 (361)
.|+ +|+||++|+||++|+|.+|+|+. ++.||++|.|.+++|++++.||+++.+.+
T Consensus 321 ~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~ 394 (429)
T PRK02862 321 SIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVN 394 (429)
T ss_pred EEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEec
Confidence 663 56666666666666666666654 46666666666666666666666666654
No 9
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.2e-48 Score=364.47 Aligned_cols=334 Identities=23% Similarity=0.348 Sum_probs=237.2
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcc-hHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hhh---ccCcEE
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEA---KLGIKI 75 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~p-li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~~---~~~~~i 75 (361)
|+|||||||+|+||+|+|..+||+|+|++|+| ||+|+|+++.++|+++++|++++..+.+.+|+.+ |.. ..+..+
T Consensus 16 ~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i 95 (425)
T PRK00725 16 TLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFV 95 (425)
T ss_pred eEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeE
Confidence 46999999999999999999999999999997 9999999999999999999999999999999975 321 111112
Q ss_pred EEec-------CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCce
Q 018060 76 ICSQ-------ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYG 146 (361)
Q Consensus 76 ~~~~-------~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~ 146 (361)
.+.. +..+.|++++++.+.+.+.....++|+|++||++++.++.++++.|.++++++++++.+. +++..||
T Consensus 96 ~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG 175 (425)
T PRK00725 96 DLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFG 175 (425)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccce
Confidence 2111 223579999999999998533234899999999999999999999999888888887665 6678999
Q ss_pred eEEEcCCCCeEeeeeecCCCC-------CCCeEEEEEEEeCHhhHh-hccC------CCCccccchHHhHHhcCceEEEE
Q 018060 147 VVVMEESTGKVEKFVEKPKLF-------VGNKINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEGKLFAMV 212 (361)
Q Consensus 147 ~v~~~~~~~~v~~~~ek~~~~-------~~~~~~~Giyi~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~~i~~~~ 212 (361)
++.+|++ ++|.+|.|||... .+.+.++|+|+|++++|. .|.. ...++..|+++.++.++++++|.
T Consensus 176 ~v~~d~~-~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~ 254 (425)
T PRK00725 176 VMAVDEN-DRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHP 254 (425)
T ss_pred EEEECCC-CCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEE
Confidence 9999876 8999999998643 256899999999999874 4532 12345679999999999999998
Q ss_pred ec-----------ceEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEE---CCC--cEECCCcEEC
Q 018060 213 LP-----------GFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQI---GEG--CLIGPDVAVG 276 (361)
Q Consensus 213 ~~-----------~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i---~~~--~~i~~~~~ig 276 (361)
++ ++|.|+++|++|+++++.++...... . .......+.......+.+.+ +.+ +.+ .+|+||
T Consensus 255 ~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~-~-~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~-~~s~i~ 331 (425)
T PRK00725 255 FSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPEL-D-LYDRNWPIWTYQEQLPPAKFVFDRSGRRGMA-INSLVS 331 (425)
T ss_pred ecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchh-h-ccCCCCccccCCCCCCCCeEeccCCCCcceE-EeCEEc
Confidence 85 59999999999999999887532110 0 00000000000001111111 111 112 255555
Q ss_pred CCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEc
Q 018060 277 PGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN 340 (361)
Q Consensus 277 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~ 340 (361)
++|+| ++|.|.+|+|+++|.|+++|+|.+|+|+++|.||++|.|.+ |+|++++.|++++++.
T Consensus 332 ~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~-~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 332 GGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR-CVIDRGCVIPEGMVIG 393 (425)
T ss_pred CCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee-EEECCCCEECCCCEEC
Confidence 55555 45555556666666666666666666666666666666654 5666666665555554
No 10
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=3.7e-49 Score=365.35 Aligned_cols=339 Identities=20% Similarity=0.301 Sum_probs=260.8
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChH-HHHHHHHHhhhccCcEE---
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEAKLGIKI--- 75 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~-~~~~~l~~~~~~~~~~i--- 75 (361)
|+|||||+|+|+||+|||..+||||+|++|+ |||+|+|++|.++|+++|++++++..+ .+++|+.+ ...|++++
T Consensus 3 ~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~~~~~ 81 (369)
T TIGR02092 3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLHRKRD 81 (369)
T ss_pred EEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCcccccC
Confidence 7899999999999999999999999999999 999999999999999999999999776 99999975 22334332
Q ss_pred ---EEecCCC-C--CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEcc--CCCCce-
Q 018060 76 ---ICSQETE-P--LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYG- 146 (361)
Q Consensus 76 ---~~~~~~~-~--~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~--~~~~~~- 146 (361)
.+..++. . .|++.+++.+++.+.....++|++++||++++.++.+++++|+++++.+++++.+.. ++..|+
T Consensus 82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~ 161 (369)
T TIGR02092 82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDT 161 (369)
T ss_pred cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCc
Confidence 1222222 2 255667888888874222348999999999999999999999998888988887764 566774
Q ss_pred eEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHh-hcc----CCCCccccchHHhHHhcCceEEEEecceEEEcC
Q 018060 147 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD-RIE----LRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 221 (361)
Q Consensus 147 ~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~-~l~----~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~ 221 (361)
.+..+++ +++..+.+++........++|+|+|+++++. .+. ....++..++++.++...+++++..+++|.|++
T Consensus 162 vv~~~~~-g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIg 240 (369)
T TIGR02092 162 ILRFDES-GKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANIN 240 (369)
T ss_pred EEEEcCC-CCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcC
Confidence 4556654 7887775433322345679999999999764 332 111123347888888778899999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCC
Q 018060 222 QPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKH 301 (361)
Q Consensus 222 t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~ 301 (361)
+|++|+++++.+++....... .......+.....+.+.+.|++++.| ++|+||++|+|+ +.|.+|+|+++|.|+++
T Consensus 241 t~~~l~~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~ 316 (369)
T TIGR02092 241 SVKSYYKANMDLLDPQNFQSL-FYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKD 316 (369)
T ss_pred CHHHHHHHHHHHhCCcchhhh-cCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCC
Confidence 999999999988875432110 00111111112223366667777777 689999999997 36899999999999999
Q ss_pred CEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEcc
Q 018060 302 ACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP 346 (361)
Q Consensus 302 ~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~ 346 (361)
|+|.+|+|++++.|++++.+.+ ++||++++|++++.+.+..+.|
T Consensus 317 ~~i~~sii~~~~~I~~~~~i~~-~ii~~~~~v~~~~~~~~~~~~~ 360 (369)
T TIGR02092 317 ALIKNCIIMQRTVIGEGAHLEN-VIIDKDVVIEPNVKIAGTSEQP 360 (369)
T ss_pred CEEEeeEEeCCCEECCCCEEEE-EEECCCCEECCCCEeCCCCCcc
Confidence 9999999999999999999988 9999999999999997754433
No 11
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=3.2e-48 Score=358.41 Aligned_cols=333 Identities=22% Similarity=0.379 Sum_probs=266.2
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hhhc----cCcEEE
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEAK----LGIKII 76 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~~~----~~~~i~ 76 (361)
|||||||+|+||+|+|...||+|+|++|+ |||+|+++.+.++|+++|+|++++..+++.+++.+ |... ..+++.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLL 80 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEe
Confidence 69999999999999999999999999999 89999999999999999999999988899999874 2110 112222
Q ss_pred Ee-----cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCceeEE
Q 018060 77 CS-----QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVV 149 (361)
Q Consensus 77 ~~-----~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~ 149 (361)
.. .+....|++++++.+...+.....++|++++||++++.++.++++.|+++++++++++.+. +++..||++.
T Consensus 81 ~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~ 160 (361)
T TIGR02091 81 PAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ 160 (361)
T ss_pred CCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE
Confidence 11 1122479999999999888433334899999999999999999999988877777776654 4567899999
Q ss_pred EcCCCCeEeeeeecCCCCCCC-------eEEEEEEEeCHhhHh-hccC------CCCccccchHHhHHhcCceEEEEecc
Q 018060 150 MEESTGKVEKFVEKPKLFVGN-------KINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEGKLFAMVLPG 215 (361)
Q Consensus 150 ~~~~~~~v~~~~ek~~~~~~~-------~~~~Giyi~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~~i~~~~~~~ 215 (361)
++++ +++..+.|||....+. +.++|+|+|+++++. .+.. ...++..|+++.++++++++++.+++
T Consensus 161 ~d~~-~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~ 239 (361)
T TIGR02091 161 VDED-GRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSG 239 (361)
T ss_pred ECCC-CCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCC
Confidence 9875 8999999998655455 899999999999874 4432 12345568999999999999999999
Q ss_pred eEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEE-ecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEcc
Q 018060 216 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANI-VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR 294 (361)
Q Consensus 216 ~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i-~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~ 294 (361)
+|.|++++++|++++..++....... .......+ .....+.+.+.|++.+.+ ++++||++|+|+++ .|.+|+|++
T Consensus 240 ~w~digt~~~~~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~ 315 (361)
T TIGR02091 240 YWRDVGTIDSFWEANMDLVSVVPPFD--LYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGI 315 (361)
T ss_pred EEEECCCHHHHHHHHHHHhCCCchhh--ccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEccEECC
Confidence 99999999999999998886432211 11111111 122345556666666666 67899999999987 889999999
Q ss_pred CcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 295 GVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 295 ~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+|.|+++|+|.+|+|++++.||+++.|.+ |+||+++.|++++.+.+
T Consensus 316 ~~~I~~~~~i~~sii~~~~~v~~~~~l~~-~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 316 RVRIGSGSTVEDSVIMGDVGIGRGAVIRN-AIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CCEECCCCEEeeeEEeCCCEECCCCEEee-eEECCCCEECCCCEeCC
Confidence 99999999999999999999999999976 99999999999988753
No 12
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=3.4e-48 Score=364.68 Aligned_cols=332 Identities=21% Similarity=0.343 Sum_probs=261.2
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hhh-------cc
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEA-------KL 71 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~~-------~~ 71 (361)
|+|||||||+|+||+|||..+||+|+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+ |.. ..
T Consensus 4 ~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 83 (436)
T PLN02241 4 VAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDG 83 (436)
T ss_pred eEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccCCC
Confidence 7899999999999999999999999999997 99999999999999999999999999999999985 210 01
Q ss_pred CcEEEEecCC-----CCCCCchHHHHHHhhccCCC---CCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEcc--C
Q 018060 72 GIKIICSQET-----EPLGTAGPLALARDKLIDDT---GEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--E 141 (361)
Q Consensus 72 ~~~i~~~~~~-----~~~g~~~al~~~~~~~~~~~---~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~--~ 141 (361)
++.+.+..+. .+.|++++++.++..+.+.. .++|++++||++++.++.+++++|+++++++++++.+.+ +
T Consensus 84 ~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~ 163 (436)
T PLN02241 84 FVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESR 163 (436)
T ss_pred CEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhh
Confidence 1333333222 35799999999887664321 348999999999999999999999999988998887764 4
Q ss_pred CCCceeEEEcCCCCeEeeeeecCCCCC---------------------CCeEEEEEEEeCHhhHhhc-cC---CCCcccc
Q 018060 142 PSKYGVVVMEESTGKVEKFVEKPKLFV---------------------GNKINAGIYLLNPAVLDRI-EL---RPTSIEK 196 (361)
Q Consensus 142 ~~~~~~v~~~~~~~~v~~~~ek~~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~~~ 196 (361)
+..||.+.++++ ++|.++.|||.... .++.++|+|+|++++|..+ .+ ...++..
T Consensus 164 ~~~ygvv~~d~~-~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~ 242 (436)
T PLN02241 164 ASDFGLMKIDDT-GRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGS 242 (436)
T ss_pred cCcceEEEECCC-CCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhH
Confidence 678999999875 89999999986432 3689999999999998644 31 2235667
Q ss_pred chHHhHHhc-CceEEEEecceEEEcCCHHHHHHHHHHHHHhhhhc-----cc-----c-ccc----CCcEEecceEEcCC
Q 018060 197 EVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK-----SS-----L-KLA----TGANIVGNVLVHES 260 (361)
Q Consensus 197 d~l~~l~~~-~~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~~~~~-----~~-----~-~~~----~~~~i~~~~~i~~~ 260 (361)
|+++.++.+ .++++|.++++|.|+++|++|+++++.+++..... .. . .++ .++.+.+ +.|+++
T Consensus 243 dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~ 321 (436)
T PLN02241 243 EIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITD-SIISHG 321 (436)
T ss_pred HHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEE-eEEcCC
Confidence 899999887 47999999999999999999999999988643110 00 0 000 2333433 778888
Q ss_pred CEECCCcEECCCcEECCCCEECCCcEEeceEEcc----------------C---cEECCCCEEeccEEcCCCEECCCcEE
Q 018060 261 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR----------------G---VRIKKHACISSSIIGWHSTVGQWARV 321 (361)
Q Consensus 261 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~----------------~---~~i~~~~~i~~~~i~~~~~ig~~~~i 321 (361)
++|+ +|.| .+|+|+++|.|+++|+|.+|+|+. + +.||++|++.+++|+++++||+++.+
T Consensus 322 ~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i 399 (436)
T PLN02241 322 CFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVI 399 (436)
T ss_pred cEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEE
Confidence 8888 8888 478999999999999998888755 2 37999999999999999999999888
Q ss_pred cCc------eEECCCeEECCc
Q 018060 322 ENM------TILGEDVHVCDE 336 (361)
Q Consensus 322 ~~~------~~ig~~~~v~~~ 336 (361)
.++ .++|+++.++++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~ 420 (436)
T PLN02241 400 INKDGVQEADREEEGYYIRSG 420 (436)
T ss_pred ecccccCCccccccccEEeCC
Confidence 743 344555555555
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.7e-47 Score=336.57 Aligned_cols=325 Identities=27% Similarity=0.403 Sum_probs=264.3
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.+||||||+|+||.. .+||-|-|++|+||++|+++...+.+.+++++++++..+.+++.+.+. .++.|..|
T Consensus 3 ~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-----~~v~~v~Q 74 (460)
T COG1207 3 LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-----DDVEFVLQ 74 (460)
T ss_pred ceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-----cCceEEEe
Confidence 5799999999999999 999999999999999999999999999999999999999999998763 15778889
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
.++.|+++|++++.+.+.+..+.++|+++||+ +....|+++++.|.+.++.++++.+...+|..||.+..+++ ++|.
T Consensus 75 ~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~-g~V~ 153 (460)
T COG1207 75 EEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVT 153 (460)
T ss_pred cccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCC-CcEE
Confidence 99999999999999999544434799999999 44556999999999989999999999999999999999986 8999
Q ss_pred eeeecCC----CCCCCeEEEEEEEeCHhhHhhc----cCC---CCccccchHHhHHhcC-ceEEEEecc--eEEEcCCHH
Q 018060 159 KFVEKPK----LFVGNKINAGIYLLNPAVLDRI----ELR---PTSIEKEVFPKIALEG-KLFAMVLPG--FWMDIGQPR 224 (361)
Q Consensus 159 ~~~ek~~----~~~~~~~~~Giyi~~~~~l~~l----~~~---~~~~~~d~l~~l~~~~-~i~~~~~~~--~~~~i~t~~ 224 (361)
.+.|... +..-..+++|+|+|+.+.|..+ ..+ ...+..|++..+...+ ++.++..+. ...-+++..
T Consensus 154 ~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~ 233 (460)
T COG1207 154 AIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV 233 (460)
T ss_pred EEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH
Confidence 9998754 2345678999999998855433 222 3344457777765554 466776653 345678888
Q ss_pred HHHHHHHHHHHhhhhc---c--cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060 225 DYITGLRLYLDSLRKK---S--SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 299 (361)
Q Consensus 225 dy~~a~~~~l~~~~~~---~--~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~ 299 (361)
++-++.+.+..+..+. . .-..+.+.+|++.+.|++++.|.+++.|.+++.||++|+||++|+|.||.|++++.|.
T Consensus 234 qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~ 313 (460)
T COG1207 234 QLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIK 313 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEE
Confidence 8888887776554432 1 1223677888899999999999999999999999999999999999999999999998
Q ss_pred CCCEEeccEEcCCCEECCCcEEcCceEECCCeEEC
Q 018060 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVC 334 (361)
Q Consensus 300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~ 334 (361)
.+++|++|.|+++|.||+++.+++++.+++++.||
T Consensus 314 ~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIG 348 (460)
T COG1207 314 AYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIG 348 (460)
T ss_pred ecceeeccEecCCcccCCccccCCcCcccCCCeEe
Confidence 88999999998888888888888733333333333
No 14
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.4e-46 Score=352.20 Aligned_cols=338 Identities=22% Similarity=0.365 Sum_probs=278.7
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|+|||||||.|+||++ ..||+|+|++|+|||+|+++++.+++++++++++++..+++.+++.+. ..+.+..+
T Consensus 4 ~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~~~~ 75 (459)
T PRK14355 4 LAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSFALQ 75 (459)
T ss_pred ceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEEEec
Confidence 5799999999999986 789999999999999999999999999999999999888888888651 23445556
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
..+.|++++++.+++.+... .++|++++||. +...+++++++.|.+.+..++++..+.+++..|+.+.++++ ++|.
T Consensus 76 ~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~-g~v~ 153 (459)
T PRK14355 76 EEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDAD-GRVL 153 (459)
T ss_pred CCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCC-CCEE
Confidence 67789999999999998532 34899999998 45667899999998877777877777777888999888876 8999
Q ss_pred eeeecCCC----CCCCeEEEEEEEeCHhhH-hhccC------CCCccccchHHhHHhcC-ceEEEEecce--EEEcCCHH
Q 018060 159 KFVEKPKL----FVGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR 224 (361)
Q Consensus 159 ~~~ek~~~----~~~~~~~~Giyi~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~-~i~~~~~~~~--~~~i~t~~ 224 (361)
++.|||.. ..+++.++|+|+|+++++ +.+.. +......|+++.+++++ ++.+|.++++ |.++++|+
T Consensus 154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~ 233 (459)
T PRK14355 154 RIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRA 233 (459)
T ss_pred EEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHH
Confidence 99988632 234688999999999864 43431 12233468899999886 5999999887 99999999
Q ss_pred HHHHHHHHHHHhhhhc----ccccccCC-cEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060 225 DYITGLRLYLDSLRKK----SSLKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 299 (361)
Q Consensus 225 dy~~a~~~~l~~~~~~----~~~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~ 299 (361)
+|+++++.++.+.... ....+++. +.+.+++.|++++.|+++|.|+++++||++|.|+++|.|.+|+|+++|.|+
T Consensus 234 ~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~ 313 (459)
T PRK14355 234 QLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVK 313 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEEC
Confidence 9999988666543321 11244555 478999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 348 (361)
Q Consensus 300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~ 348 (361)
+++++.+++|++++.||+++.+.++++|+++++||+++.+++..++.++
T Consensus 314 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~ 362 (459)
T PRK14355 314 AGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGS 362 (459)
T ss_pred CCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCc
Confidence 9999999999999999999999999999999999888765554444333
No 15
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-44 Score=345.54 Aligned_cols=339 Identities=21% Similarity=0.280 Sum_probs=269.5
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
+.|||||||+|+||++ ..||+|+|++|+|||+|+++++.+++++++++++++..+.+.+++.+.. ..+.+..+
T Consensus 5 ~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----~~~~~~~~ 77 (482)
T PRK14352 5 TAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA----PEVDIAVQ 77 (482)
T ss_pred ceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC----CccEEEeC
Confidence 4699999999999997 6899999999999999999999999999999999998778888876531 12344556
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
....|++++++.+++.+....++++++++||+ + ...+++++++.|++++..++++..+..++..|+.+..+++ ++|.
T Consensus 78 ~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~-g~V~ 156 (482)
T PRK14352 78 DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQD-GEVT 156 (482)
T ss_pred CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCC-CCEE
Confidence 66779999999999988432234799999998 3 4557999999998877777777777788889999888776 8999
Q ss_pred eeeecCCCC----CCCeEEEEEEEeCHhhHhhc-c---CC---CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHH
Q 018060 159 KFVEKPKLF----VGNKINAGIYLLNPAVLDRI-E---LR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDY 226 (361)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giyi~~~~~l~~l-~---~~---~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy 226 (361)
++.|||... ..+++++|+|+|++++|..+ . .. ...+..|+++++++++ ++++|.++++|.|++++++|
T Consensus 157 ~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~ 236 (482)
T PRK14352 157 AIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV 236 (482)
T ss_pred EEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence 999998743 34578999999999988543 2 11 2233468899999886 69999999999999998887
Q ss_pred ------HHHHHHHHHhhhhccccccc-CCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060 227 ------ITGLRLYLDSLRKKSSLKLA-TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 299 (361)
Q Consensus 227 ------~~a~~~~l~~~~~~~~~~~~-~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~ 299 (361)
..+++..+..+.+.-...++ ..+++.++++|++++.|+++++|+++++||++|.|+++|.|.+++|+++|.|+
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~ 316 (482)
T PRK14352 237 QLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVV 316 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEe
Confidence 44455444443332222233 36788999999999999999999999999999999999999999999999997
Q ss_pred CCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 348 (361)
Q Consensus 300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~ 348 (361)
+ +++.+++|++++.||+++.+.++++||+++.++..+.+.++.++.++
T Consensus 317 ~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~ 364 (482)
T PRK14352 317 R-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGT 364 (482)
T ss_pred e-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCc
Confidence 4 78888999999999988888877888888887766655444444433
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.1e-44 Score=341.60 Aligned_cols=333 Identities=21% Similarity=0.341 Sum_probs=262.7
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|+|||||||+|+||++ ..||+|+|++|+|||+|+++++.++|++++++++++..+.+++++... + +.+..+
T Consensus 8 ~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~--i~~v~~ 78 (481)
T PRK14358 8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQGS----G--VAFARQ 78 (481)
T ss_pred ceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhccC----C--cEEecC
Confidence 6899999999999987 689999999999999999999999999999999999878888887531 3 444556
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
..+.|++++++.+.+.+...+ +++++++||+ +...+++++++.|+++++.+++++.+.+++..||.+..+++ ++|.
T Consensus 79 ~~~~Gt~~al~~~~~~l~~~~-~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~-g~v~ 156 (481)
T PRK14358 79 EQQLGTGDAFLSGASALTEGD-ADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVE 156 (481)
T ss_pred CCcCCcHHHHHHHHHHhhCCC-CcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCC-CCEE
Confidence 667899999999998884322 3799999998 44567999999998888888888888778888999999876 8999
Q ss_pred eeeecCCCC----CCCeEEEEEEEeCHh---hHhhccCC---CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHH
Q 018060 159 KFVEKPKLF----VGNKINAGIYLLNPA---VLDRIELR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYI 227 (361)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giyi~~~~---~l~~l~~~---~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~ 227 (361)
+|.|||... .++++++|+|+|+++ +++.+... ...+..|+++.+++++ .+++|.+.++|..++.-.+|.
T Consensus 157 ~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~ 236 (481)
T PRK14358 157 RIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAG 236 (481)
T ss_pred EEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHH
Confidence 999998642 245789999999954 55555421 2233358899998886 488888887776666655553
Q ss_pred HHHHH-HHHh-hhh---cccc-cccC-CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECC
Q 018060 228 TGLRL-YLDS-LRK---KSSL-KLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300 (361)
Q Consensus 228 ~a~~~-~l~~-~~~---~~~~-~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~ 300 (361)
.++.. ++.. ... .... .+.+ ...+.++++||+++.|+++|+|.+++.||++|+|+++|.|.+|+|+++|.|++
T Consensus 237 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~ 316 (481)
T PRK14358 237 LAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKP 316 (481)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEee
Confidence 33321 2221 111 1111 1223 33457899999999999999999899999999999999999999999999999
Q ss_pred CCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEE
Q 018060 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 344 (361)
Q Consensus 301 ~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i 344 (361)
+++|.+++||+++.|++++.+..+++||+++.|++++.++++.+
T Consensus 317 ~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i 360 (481)
T PRK14358 317 HSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARL 360 (481)
T ss_pred cceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCcee
Confidence 99999999999999999999988899999999998777654433
No 17
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.7e-44 Score=341.40 Aligned_cols=337 Identities=20% Similarity=0.288 Sum_probs=268.8
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.|||||||+|+||+. ..||+|+|++|+|||+|++++|.+.+++++++++++..+.+++++.+. ++ .+..+
T Consensus 6 ~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~~--~~v~~ 76 (456)
T PRK14356 6 TGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----DA--RFVLQ 76 (456)
T ss_pred eeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc----Cc--eEEEc
Confidence 4699999999999975 789999999999999999999999999999999998877777776431 23 33445
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
..+.|++++++.+++.+...+.+++++++||+ +...+++++++.+. +++++++..+..++..||.+.. ++ ++|.
T Consensus 77 ~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~-~~-g~V~ 152 (456)
T PRK14356 77 EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR-RN-GHVA 152 (456)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE-cC-CeEE
Confidence 55679999999999888543345899999999 34456888998875 4567777778888889998876 34 8999
Q ss_pred eeeecCCC------CCCCeEEEEEEEeCHhhHhhccC-------CCCccccchHHhHHhcC-ceEEEEecc--eEEEcCC
Q 018060 159 KFVEKPKL------FVGNKINAGIYLLNPAVLDRIEL-------RPTSIEKEVFPKIALEG-KLFAMVLPG--FWMDIGQ 222 (361)
Q Consensus 159 ~~~ek~~~------~~~~~~~~Giyi~~~~~l~~l~~-------~~~~~~~d~l~~l~~~~-~i~~~~~~~--~~~~i~t 222 (361)
.+.|||.. ..+++.++|+|+|++++++.+.. +...+..++++.++..+ ++.++...+ .|.++++
T Consensus 153 ~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~t 232 (456)
T PRK14356 153 AIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNT 232 (456)
T ss_pred EEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcC
Confidence 99998752 24568899999999998764421 12223357888887665 588888765 6799999
Q ss_pred HHHHHHHHHHHHHhhhhc---ccccc--cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcE
Q 018060 223 PRDYITGLRLYLDSLRKK---SSLKL--ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR 297 (361)
Q Consensus 223 ~~dy~~a~~~~l~~~~~~---~~~~~--~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~ 297 (361)
|+||.++++.+..+.... ....+ ++++++++++.|++++.|.++|.|+++++||++|.|+++|.|.+++|+++|.
T Consensus 233 p~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~ 312 (456)
T PRK14356 233 PAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGAT 312 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCE
Confidence 999999887666543321 11112 3567788888899999998889998899999999999999999999999999
Q ss_pred ECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCcee
Q 018060 298 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 350 (361)
Q Consensus 298 i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v 350 (361)
|+++|.|.+++||+++.||+++.|.++++||+++.|++++.++++.+.+++.+
T Consensus 313 I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i 365 (456)
T PRK14356 313 IHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKA 365 (456)
T ss_pred EeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEe
Confidence 99999999999999999999999998899999999998888776666555443
No 18
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=9.5e-44 Score=338.63 Aligned_cols=333 Identities=24% Similarity=0.363 Sum_probs=263.6
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|+|||||||+|+||++ ..||+|+|++|+|||+|+++++.++++++++++++++.+.+.+++.++ ++.+ ..+
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~i~~--~~~ 71 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----DVNW--VLQ 71 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----CcEE--EEc
Confidence 8999999999999998 789999999999999999999999999999999999888888888764 3333 344
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
..+.|++++++.+.+.+. ..++|++++||+ +...+++++++.|.+. ..++++.+.+++..|+.+..+++ +++.
T Consensus 72 ~~~~G~~~ai~~a~~~l~--~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~v~~d~~-g~v~ 146 (451)
T TIGR01173 72 AEQLGTGHAVLQALPFLP--DDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLPDPTGYGRIIREND-GKVT 146 (451)
T ss_pred CCCCchHHHHHHHHHhcC--CCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecCCCCCCCEEEEcCC-CCEE
Confidence 555789999999999884 224899999998 4455689999888664 35666666667777998888875 8999
Q ss_pred eeeecCCCC----CCCeEEEEEEEeCHhhHh-hccC---C---CCccccchHHhHHhcC-ceEEEEecce--EEEcCCHH
Q 018060 159 KFVEKPKLF----VGNKINAGIYLLNPAVLD-RIEL---R---PTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR 224 (361)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giyi~~~~~l~-~l~~---~---~~~~~~d~l~~l~~~~-~i~~~~~~~~--~~~i~t~~ 224 (361)
.+.|||... .....++|+|+|+++++. .++. . ...+..++++.++.++ .+.+|.++++ |.++++|+
T Consensus 147 ~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~ 226 (451)
T TIGR01173 147 AIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRL 226 (451)
T ss_pred EEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHH
Confidence 999987532 235789999999999853 3331 1 2233358888888876 5889988887 89999999
Q ss_pred HHHHHHHHHHHhhhhc-----ccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060 225 DYITGLRLYLDSLRKK-----SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 299 (361)
Q Consensus 225 dy~~a~~~~l~~~~~~-----~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~ 299 (361)
+|.+++..+..+.... .....+....+.+++.|++++.|+++++|+++++||++|.|+++|.|.++.|+++|.|+
T Consensus 227 dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~ 306 (451)
T TIGR01173 227 QLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIK 306 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEe
Confidence 9988876554322211 11112345567888899999999999999888999999999999999999999999999
Q ss_pred CCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccC
Q 018060 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 347 (361)
Q Consensus 300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~ 347 (361)
++|+|.+++|++++.||+++.|.++++||+++.|++++.+.++.++.+
T Consensus 307 ~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~ 354 (451)
T TIGR01173 307 AYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG 354 (451)
T ss_pred eecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC
Confidence 999999999999999999999988888888888888776655544443
No 19
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-44 Score=313.32 Aligned_cols=339 Identities=22% Similarity=0.374 Sum_probs=263.3
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhh-ccC-cEEEE
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEA-KLG-IKIIC 77 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~-~~~-~~i~~ 77 (361)
||||++|+|.|+||..++...||||||++|+|||+|.|++|.++|++++.|++.+ ....+++.+.+... +.. ..+.+
T Consensus 10 fqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~i 89 (433)
T KOG1462|consen 10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEI 89 (433)
T ss_pred hhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccEEEe
Confidence 5899999999999999999999999999999999999999999999999999998 44567777754211 111 11221
Q ss_pred e-cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc-----------cCCCCc
Q 018060 78 S-QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV-----------DEPSKY 145 (361)
Q Consensus 78 ~-~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~ 145 (361)
. ......|++++++.....++. + +|++++||.+++.++..+++.+++.++...++.... +..+..
T Consensus 90 p~~~~~d~gtadsLr~Iy~kikS--~-DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~ 166 (433)
T KOG1462|consen 90 PTDDNSDFGTADSLRYIYSKIKS--E-DFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQAR 166 (433)
T ss_pred ecccccccCCHHHHhhhhhhhcc--C-CEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCccccccccc
Confidence 1 122356999999999999953 3 899999999999999999999998876644443321 112234
Q ss_pred eeEEEcCCCCeEeeeee-----c------------CC-CCCCCeEEEEEEEeCHhhHhhccC--CCCccccchHHhHHhc
Q 018060 146 GVVVMEESTGKVEKFVE-----K------------PK-LFVGNKINAGIYLLNPAVLDRIEL--RPTSIEKEVFPKIALE 205 (361)
Q Consensus 146 ~~v~~~~~~~~v~~~~e-----k------------~~-~~~~~~~~~Giyi~~~~~l~~l~~--~~~~~~~d~l~~l~~~ 205 (361)
..+..+++|+|+..... + |+ ...+++.++++|+|+.+++++|.+ +..+|..+++|.|+++
T Consensus 167 d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkk 246 (433)
T KOG1462|consen 167 DVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKK 246 (433)
T ss_pred ceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhh
Confidence 56666777677654421 1 12 345778999999999999999974 4567888999888765
Q ss_pred Cc-------------------------------e--EEEEe--cceEEEcCCHHHHHHHHH--HHHHhhhhcc---cccc
Q 018060 206 GK-------------------------------L--FAMVL--PGFWMDIGQPRDYITGLR--LYLDSLRKKS---SLKL 245 (361)
Q Consensus 206 ~~-------------------------------i--~~~~~--~~~~~~i~t~~dy~~a~~--~~l~~~~~~~---~~~~ 245 (361)
+. + ++|.. .+-+.++++.-.|+++|+ .+. +++... ....
T Consensus 247 Q~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~-~l~~e~~~~k~~~ 325 (433)
T KOG1462|consen 247 QFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLK-KLCSEAKFVKNYV 325 (433)
T ss_pred hhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHH-Hhccccccccchh
Confidence 33 2 22222 235678999999999994 332 333221 2223
Q ss_pred cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCce
Q 018060 246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 325 (361)
Q Consensus 246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~ 325 (361)
...+.+...+.++++++|++++.| ..|+||.+|.||+.++|.||.+++|+.||+++.|++|+||.++.||+++++.+ |
T Consensus 326 ~~~~l~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~n-C 403 (433)
T KOG1462|consen 326 KKVALVGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKN-C 403 (433)
T ss_pred hheeccchhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeee-e
Confidence 344667789999999999999999 79999999999999999999999999999999999999999999999999999 9
Q ss_pred EECCCeEECCceEEcCcEEc
Q 018060 326 ILGEDVHVCDEIYSNGGVVL 345 (361)
Q Consensus 326 ~ig~~~~v~~~~~i~~~~i~ 345 (361)
+||.+-+|.+.....+.++.
T Consensus 404 ~Ig~~yvVeak~~~~~ev~~ 423 (433)
T KOG1462|consen 404 IIGPGYVVEAKGKHGGEVLV 423 (433)
T ss_pred EecCCcEEcccccccccEee
Confidence 99999999988887775554
No 20
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.3e-42 Score=327.10 Aligned_cols=349 Identities=19% Similarity=0.275 Sum_probs=250.0
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
+.|||||||.|+||++ ..||+|+|++|+|||+|+++++.+++++++++++++..+.+.+++.++ +..+.+..+
T Consensus 6 ~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~~~~~ 78 (446)
T PRK14353 6 CLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAEIFVQ 78 (446)
T ss_pred ceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCceEEEc
Confidence 4699999999999986 689999999999999999999999999999999999888888887653 122333344
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
..+.|++++++.+++.+... .+++++++||+ +. ...++.+++.+ +.+.+++++..+..++..|+.+.. ++ ++|.
T Consensus 79 ~~~~G~~~sl~~a~~~l~~~-~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~~~-~~-g~v~ 154 (446)
T PRK14353 79 KERLGTAHAVLAAREALAGG-YGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAADPTGYGRLIV-KG-GRLV 154 (446)
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEEEE-CC-CeEE
Confidence 55679999999999888422 24899999998 44 34578888744 445667777777777788988777 33 8999
Q ss_pred eeeecCCCC----CCCeEEEEEEEeCHhhH-hhccC------CCCccccchHHhHHhcCc-eEEEEec-ceEEEcCCHHH
Q 018060 159 KFVEKPKLF----VGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGK-LFAMVLP-GFWMDIGQPRD 225 (361)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giyi~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~~-i~~~~~~-~~~~~i~t~~d 225 (361)
.+.|||... .+.+.++|+|+|++..+ +.++. +...+..+.++.+++.+. ++.+..+ +.|.++++|+|
T Consensus 155 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~d 234 (446)
T PRK14353 155 AIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAE 234 (446)
T ss_pred EEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHH
Confidence 999997532 23678999999998755 43321 122334577888887764 8888876 46999999999
Q ss_pred HHHHHHHHHHhhhh-----c------------ccccccCCcEEecceEEcCCCEECCCcEECC-----CcEECCCCEECC
Q 018060 226 YITGLRLYLDSLRK-----K------------SSLKLATGANIVGNVLVHESAQIGEGCLIGP-----DVAVGPGCVVES 283 (361)
Q Consensus 226 y~~a~~~~l~~~~~-----~------------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~i~~ 283 (361)
|.+++..+...... . ....+++++.|.++++|+++++|+++|.|++ +++||++|+||+
T Consensus 235 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~ 314 (446)
T PRK14353 235 LAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGP 314 (446)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECC
Confidence 99998766443210 0 1123444555556666666666666666654 467777777777
Q ss_pred CcEEe-ceEEccCcEECCCCEEecc-----------------EEcCCCEECCCcEE-------cCceEECCCeEECCceE
Q 018060 284 GVRLS-RCTVMRGVRIKKHACISSS-----------------IIGWHSTVGQWARV-------ENMTILGEDVHVCDEIY 338 (361)
Q Consensus 284 ~~~i~-~~~i~~~~~i~~~~~i~~~-----------------~i~~~~~ig~~~~i-------~~~~~ig~~~~v~~~~~ 338 (361)
++.|. +++|+++|.||+++.+.++ +||+++.||.++.+ ..+++||++++||.++.
T Consensus 315 ~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~ 394 (446)
T PRK14353 315 YARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSA 394 (446)
T ss_pred CeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCE
Confidence 77776 6777888888777766544 44455555554433 11466677777776666
Q ss_pred E-------cCcEEccCceeecccCCCccc
Q 018060 339 S-------NGGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 339 i-------~~~~i~~~~~v~~~~~~~~~~ 360 (361)
+ .++.+++++.|.+++++++++
T Consensus 395 i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~ 423 (446)
T PRK14353 395 LVAPVTIGDGAYIASGSVITEDVPDDALA 423 (446)
T ss_pred EeCCCEECCCCEECCCCEECccCCCCCEE
Confidence 5 367778888888899988765
No 21
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.2e-42 Score=324.55 Aligned_cols=345 Identities=19% Similarity=0.297 Sum_probs=241.6
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.+.++ ++++.|++++..+.+++++.++. .++++.....
T Consensus 3 ~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~--~~v~~~~~~~ 76 (430)
T PRK14359 3 LSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF--PGVIFHTQDL 76 (430)
T ss_pred ccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC--CceEEEEecC
Confidence 4699999999999987 8999999999999999999999987 78999999998888999887631 1345544444
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF 160 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (361)
....|++++++.+.. ..++|++++||..+. ..+.++.+.+.++++++++.+.+++..|+.+..+ + +++..+
T Consensus 77 ~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d-~-g~v~~i 147 (430)
T PRK14359 77 ENYPGTGGALMGIEP-----KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLADPKGYGRVVIE-N-GQVKKI 147 (430)
T ss_pred ccCCCcHHHHhhccc-----CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc-C-CeEEEE
Confidence 445788888876321 234899999999332 1234455555566677777777778789987765 3 799999
Q ss_pred eecCCC----CCCCeEEEEEEEeCHhhHhhccCC-------CCccccchHHhHHhcC-ceEEEEec-ceEEEcCCHHHHH
Q 018060 161 VEKPKL----FVGNKINAGIYLLNPAVLDRIELR-------PTSIEKEVFPKIALEG-KLFAMVLP-GFWMDIGQPRDYI 227 (361)
Q Consensus 161 ~ek~~~----~~~~~~~~Giyi~~~~~l~~l~~~-------~~~~~~d~l~~l~~~~-~i~~~~~~-~~~~~i~t~~dy~ 227 (361)
.|+|.. ....+.++|+|+|++++|..+... ...+..|+++.+++.+ ++..+..+ ++|.|+++|+||.
T Consensus 148 ~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~ 227 (430)
T PRK14359 148 VEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELA 227 (430)
T ss_pred EECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHH
Confidence 998752 224678999999999998765321 2233457888888774 58888886 5899999999999
Q ss_pred HHHHHHHHhhhhc-----------ccccccCCcEEecceEEcCCCEECCCcEEC-----------C----CcEECCCCEE
Q 018060 228 TGLRLYLDSLRKK-----------SSLKLATGANIVGNVLVHESAQIGEGCLIG-----------P----DVAVGPGCVV 281 (361)
Q Consensus 228 ~a~~~~l~~~~~~-----------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~-----------~----~~~ig~~~~i 281 (361)
+++..+..+..+. ....+++++.+.+++.|++++.|+++|.|+ + +++||++|+|
T Consensus 228 ~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i 307 (430)
T PRK14359 228 KAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHI 307 (430)
T ss_pred HHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEE
Confidence 9987665543321 122355666666666677776665555443 1 2333444444
Q ss_pred CCCcEEeceEEccCc----------EECCCCEEeccEEcCCCEECCCcEEcC-------ceEECCCeEECCceEEc----
Q 018060 282 ESGVRLSRCTVMRGV----------RIKKHACISSSIIGWHSTVGQWARVEN-------MTILGEDVHVCDEIYSN---- 340 (361)
Q Consensus 282 ~~~~~i~~~~i~~~~----------~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~ig~~~~v~~~~~i~---- 340 (361)
++++.|.+|.|+++| +||+++.|.+|+||++|.||+++.+.+ +++||+++.+|.++.+.
T Consensus 308 ~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ 387 (430)
T PRK14359 308 RPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVN 387 (430)
T ss_pred CCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcE
Confidence 444444444444444 444555566667777777777765542 26777777777776653
Q ss_pred ---CcEEccCceeecccCCCccc
Q 018060 341 ---GGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 341 ---~~~i~~~~~v~~~~~~~~~~ 360 (361)
++.|++++.|.+++++++++
T Consensus 388 ig~~~~i~~g~~v~~~v~~~~~~ 410 (430)
T PRK14359 388 IEDNVLIAAGSTVTKDVPKGSLA 410 (430)
T ss_pred ECCCCEECCCCEEccccCCCcEE
Confidence 57888899999999998765
No 22
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-43 Score=318.92 Aligned_cols=339 Identities=20% Similarity=0.314 Sum_probs=272.4
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH--hhhccCcEEEEe
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE--FEAKLGIKIICS 78 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~--~~~~~~~~i~~~ 78 (361)
+|||+||.-..+||.|+|...|++|||++|.|||+|+|++|.++|+++++|+|+.+..++++|+++ |...+...++.+
T Consensus 25 LqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti 104 (673)
T KOG1461|consen 25 LQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTI 104 (673)
T ss_pred eEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceEEEE
Confidence 589999999999999999999999999999999999999999999999999999999999999996 655555445444
Q ss_pred cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcC-----CceEEEEEEcc--CCCCceeEEEc
Q 018060 79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG-----GEASIMVTKVD--EPSKYGVVVME 151 (361)
Q Consensus 79 ~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~-----~~~~i~~~~~~--~~~~~~~v~~~ 151 (361)
........+++++...+.--.. .+|++++||++++.+|.+++++|+.++ .-||++..+.. .....-.+.+|
T Consensus 105 ~s~~~~S~GDamR~id~k~lit--gDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd 182 (673)
T KOG1461|consen 105 CSGESRSVGDAMRDIDEKQLIT--GDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVD 182 (673)
T ss_pred cCCCcCcHHHHHHHHHhcceee--cceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEc
Confidence 4445567788888776543112 289999999999999999999996553 23666655542 12233467778
Q ss_pred CCCCeEeeeee----cCC--------------CCCCCeEEEEEEEeCHhhHhhccCCCCc-cccchHHhHHh----cCce
Q 018060 152 ESTGKVEKFVE----KPK--------------LFVGNKINAGIYLLNPAVLDRIELRPTS-IEKEVFPKIAL----EGKL 208 (361)
Q Consensus 152 ~~~~~v~~~~e----k~~--------------~~~~~~~~~Giyi~~~~~l~~l~~~~~~-~~~d~l~~l~~----~~~i 208 (361)
..|.++..|.+ +.. ....++.+++|-+||+.++..|.++..+ ...||+.-++. ..++
T Consensus 183 ~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~kI 262 (673)
T KOG1461|consen 183 SRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGYKI 262 (673)
T ss_pred CCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCCeE
Confidence 77789998874 110 1245678999999999999999877543 33466655544 3468
Q ss_pred EEEEecc--eEEEcCCHHHHHHHHHHHHHhhhhcccc-----------------------cccCCcEEecceEEcCCCEE
Q 018060 209 FAMVLPG--FWMDIGQPRDYITGLRLYLDSLRKKSSL-----------------------KLATGANIVGNVLVHESAQI 263 (361)
Q Consensus 209 ~~~~~~~--~~~~i~t~~dy~~a~~~~l~~~~~~~~~-----------------------~~~~~~~i~~~~~i~~~~~i 263 (361)
+++.... |..++.+...|...++.++.+|....-+ .+.+++.++.++.||.++.|
T Consensus 263 ~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~I 342 (673)
T KOG1461|consen 263 HVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKI 342 (673)
T ss_pred EEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccc
Confidence 8888765 7889999999999999998887642111 12345677788889999999
Q ss_pred CCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060 264 GEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 342 (361)
Q Consensus 264 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~ 342 (361)
|.+++| .||+||.||.||.||+|.+|.||++|+||+||+|++|+||+++.|+++|.+.+||++|.++++|++.++...
T Consensus 343 g~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 343 GSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred cCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 999999 699999999999999999999999999999999999999999999999999999999999999998887543
No 23
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.4e-43 Score=292.29 Aligned_cols=232 Identities=31% Similarity=0.542 Sum_probs=207.4
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEec
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
||+||||||.||||+|+|...||+|+|+.+||||.|.|+.|+.+|+++|.|++++ +...+++++.+ ++.||+++.|..
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~ 79 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITYAV 79 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEEEe
Confidence 9999999999999999999999999999999999999999999999999999998 66777777776 678899999999
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK 159 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (361)
|.++.|.++|+..+.+++ .++ +|+++.||.++..++.++++.+.++...+++++.++.+|++||++++|++ +++.+
T Consensus 80 Q~~p~GlA~Av~~a~~fv--~~~-~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~-~~v~~ 155 (286)
T COG1209 80 QPEPDGLAHAVLIAEDFV--GDD-DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDED-GKVIG 155 (286)
T ss_pred cCCCCcHHHHHHHHHhhc--CCC-ceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCC-CcEEE
Confidence 999999999999999999 333 89999999977779999999999988899999999999999999999987 79999
Q ss_pred eeecCCCCCCCeEEEEEEEeCHhhHhhccC-----CCCccccchHHhHHhcCceEE-EEecceEEEcCCHHHHHHHHHHH
Q 018060 160 FVEKPKLFVGNKINAGIYLLNPAVLDRIEL-----RPTSIEKEVFPKIALEGKLFA-MVLPGFWMDIGQPRDYITGLRLY 233 (361)
Q Consensus 160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~-----~~~~~~~d~l~~l~~~~~i~~-~~~~~~~~~i~t~~dy~~a~~~~ 233 (361)
+.|||..+.|+++.+|+|+|++.+++.+.. +...-..|+++.+++++.... ....|.|.|.+|++++++|+.+.
T Consensus 156 l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i 235 (286)
T COG1209 156 LEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFV 235 (286)
T ss_pred eEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHH
Confidence 999999999999999999999999987752 122222578999999987544 44567999999999999999887
Q ss_pred HHhh
Q 018060 234 LDSL 237 (361)
Q Consensus 234 l~~~ 237 (361)
+...
T Consensus 236 ~~~~ 239 (286)
T COG1209 236 RTVS 239 (286)
T ss_pred HHHH
Confidence 7633
No 24
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5e-42 Score=326.24 Aligned_cols=319 Identities=24% Similarity=0.350 Sum_probs=215.6
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|+|||||||+|+||++ ..||+|+|++|+|||+|+++++.+++++++++++++..+.+++++... .+.+..+
T Consensus 6 ~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~------~~~~i~~ 76 (456)
T PRK09451 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE------PLNWVLQ 76 (456)
T ss_pred ceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC------CcEEEEC
Confidence 5799999999999985 789999999999999999999999999999999998777788777531 2334445
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
..+.|++++++.+...+. +.+++++++||+ +...+++++++.|.+.. +.+++.+.+++..||++.. ++ ++|.
T Consensus 77 ~~~~Gt~~al~~a~~~l~--~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v~~-~~-g~V~ 150 (456)
T PRK09451 77 AEQLGTGHAMQQAAPFFA--DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRITR-EN-GKVV 150 (456)
T ss_pred CCCCCcHHHHHHHHHhhc--cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEEEe-cC-CeEE
Confidence 567799999999998874 234899999998 45567899988875443 4556666778888998754 44 8999
Q ss_pred eeeecCCCC----CCCeEEEEEEEeCHhhHhh-cc---C---CCCccccchHHhHHhcC-ceEEEE------ecce--EE
Q 018060 159 KFVEKPKLF----VGNKINAGIYLLNPAVLDR-IE---L---RPTSIEKEVFPKIALEG-KLFAMV------LPGF--WM 218 (361)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giyi~~~~~l~~-l~---~---~~~~~~~d~l~~l~~~~-~i~~~~------~~~~--~~ 218 (361)
++.|||... .+++.++|+|+|+++.|.. ++ . +...+..|+++.+++++ ++.+|. +.|+ |.
T Consensus 151 ~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~ 230 (456)
T PRK09451 151 GIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRL 230 (456)
T ss_pred EEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHH
Confidence 999998632 2468999999999987753 32 1 12234468999999886 677775 3555 67
Q ss_pred EcCCHHHHHHHHHH--HHH-hhhhcccccccCC-cEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEcc
Q 018060 219 DIGQPRDYITGLRL--YLD-SLRKKSSLKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR 294 (361)
Q Consensus 219 ~i~t~~dy~~a~~~--~l~-~~~~~~~~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~ 294 (361)
|++++++|++++.. .+. .... .++. ..+.+++.+++++.|+++|.|.++++||++|.|+++|.|.+|.|++
T Consensus 231 di~~~~~y~~~~~~~~~l~~~~~~-----~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~ 305 (456)
T PRK09451 231 QLARLERVYQAEQAEKLLLAGVML-----RDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGD 305 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEE-----eCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcC
Confidence 89999999998742 211 1100 0111 1123344455555555555554445555555555555555555555
Q ss_pred CcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060 295 GVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 339 (361)
Q Consensus 295 ~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i 339 (361)
+|.|++++.|.+++|++++.|++++.|.+++++|+++.|++++.+
T Consensus 306 ~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 306 DCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 555555555555555555555555555444444444444444433
No 25
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.9e-41 Score=319.27 Aligned_cols=325 Identities=24% Similarity=0.345 Sum_probs=250.1
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|+|||||||.|+||++ .+||+|+|++|+|||+|+|+++.+.+ ++++|++++..+.+.+++.. ++. +..+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~~~--~~~~ 69 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----WVK--IFLQ 69 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----ccE--EEec
Confidence 8999999999999986 78999999999999999999999874 89999999887777777653 233 3445
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
..+.|++++++.+.+++.. .++|++++||+ +...+++++++.|+++++++++++++.+++..|+.+..+ + +++
T Consensus 70 ~~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~-g~v- 144 (448)
T PRK14357 70 EEQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-G-GKY- 144 (448)
T ss_pred CCCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-C-CeE-
Confidence 6677999999999999842 34899999998 556679999999988888899998888888899998877 4 788
Q ss_pred eeeecCCCC----CCCeEEEEEEEeCHhhHhh-ccC---C---CCccccchHHhHHhcCceEEEEecce--EEEcCCHHH
Q 018060 159 KFVEKPKLF----VGNKINAGIYLLNPAVLDR-IEL---R---PTSIEKEVFPKIALEGKLFAMVLPGF--WMDIGQPRD 225 (361)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giyi~~~~~l~~-l~~---~---~~~~~~d~l~~l~~~~~i~~~~~~~~--~~~i~t~~d 225 (361)
.+.|+|... ...+.++|+|+|++++|.. ++. . ...+..|+++.+ .++..+...++ |.+++++++
T Consensus 145 ~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~ 221 (448)
T PRK14357 145 RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQ 221 (448)
T ss_pred EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHH
Confidence 888876532 1358999999999998644 331 1 112224666666 24777878787 667779999
Q ss_pred HHHHHHHHHHh----hhhcccccccC-CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECC
Q 018060 226 YITGLRLYLDS----LRKKSSLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300 (361)
Q Consensus 226 y~~a~~~~l~~----~~~~~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~ 300 (361)
+..+...+... +.......+++ .+.+++++.|++++.|+++++|++++.||++|+|+++|.|.+|+|+++|.|.
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~- 300 (448)
T PRK14357 222 LAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII- 300 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-
Confidence 98776554332 11111222444 3578889999999999999999888999999999999999888899988885
Q ss_pred CCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEc
Q 018060 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 345 (361)
Q Consensus 301 ~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~ 345 (361)
.+.+.+++|++++.|++++.+.++++||++++|++++.+.++.++
T Consensus 301 ~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig 345 (448)
T PRK14357 301 RSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345 (448)
T ss_pred eeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence 467778888888888888888777788887777777665444433
No 26
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.4e-41 Score=319.02 Aligned_cols=335 Identities=24% Similarity=0.403 Sum_probs=262.2
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|+|||||||.|+||++ .+||+|+|++|+|||+|+|+++.++++++++++++++.+++++++.+ +.. +..+
T Consensus 3 ~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~~~--~~~~ 72 (458)
T PRK14354 3 RYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----RSE--FALQ 72 (458)
T ss_pred ceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----CcE--EEEc
Confidence 4799999999999986 79999999999999999999999999999999999988888888754 222 3335
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
..+.|++++++.+++++... +++++++.||. +...+++++++.|.+.++++++++...+++..|+.+..+++ ++|.
T Consensus 73 ~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~-~~V~ 150 (458)
T PRK14354 73 EEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVE 150 (458)
T ss_pred CCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCC-CCEE
Confidence 55678999999999988432 24799999997 44567899999998777778887777777778888877775 8999
Q ss_pred eeeecCCC----CCCCeEEEEEEEeCHhh-HhhccC------CCCccccchHHhHHhcC-ceEEEEecce--EEEcCCHH
Q 018060 159 KFVEKPKL----FVGNKINAGIYLLNPAV-LDRIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR 224 (361)
Q Consensus 159 ~~~ek~~~----~~~~~~~~Giyi~~~~~-l~~l~~------~~~~~~~d~l~~l~~~~-~i~~~~~~~~--~~~i~t~~ 224 (361)
.+.|||.. ....+.++|+|+|+++. ++.++. +......|+++.+++.+ ++.++.++++ |.++++++
T Consensus 151 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~ 230 (458)
T PRK14354 151 KIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRV 230 (458)
T ss_pred EEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHH
Confidence 99998742 23457899999999874 454421 11222357788887665 5888988865 55778999
Q ss_pred HHHHHHHHHHHhhhhcc----cccccC-CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEEC
Q 018060 225 DYITGLRLYLDSLRKKS----SLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 299 (361)
Q Consensus 225 dy~~a~~~~l~~~~~~~----~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~ 299 (361)
||..++..+........ ...+.+ .+.+.+++.|++++.|+++++|++++.||++|.|++++.|.+++|+++|.|+
T Consensus 231 Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~ 310 (458)
T PRK14354 231 ALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT 310 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEE
Confidence 99998776554333211 122444 4678889999999999999999889999999999999999999999999998
Q ss_pred CCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 348 (361)
Q Consensus 300 ~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~ 348 (361)
++.+.+++||+++.||+++.|.++++||+++.+++++.+.++.+.+++
T Consensus 311 -~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~ 358 (458)
T PRK14354 311 -NSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGT 358 (458)
T ss_pred -EEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCC
Confidence 467888899999999998888877888888888888777655554443
No 27
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.4e-40 Score=311.46 Aligned_cols=334 Identities=18% Similarity=0.297 Sum_probs=256.6
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.+||||||+|+||++ ..||+|+|++|+|||+|+|++|.+++++++++++++..+.+.+++.+.. + +.+..+
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~--i~~v~~ 73 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP---G--LEFVEQ 73 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC---C--eEEEEe
Confidence 5789999999999987 7899999999999999999999999999999999988777888876421 2 333445
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
....|++++++.+++.+...+ +++++++||. +...+++++++.|++.++..+++..+..++..|+.+..+++ ++|.
T Consensus 74 ~~~~G~~~sv~~~~~~l~~~~-~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~-g~v~ 151 (450)
T PRK14360 74 QPQLGTGHAVQQLLPVLKGFE-GDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVE 151 (450)
T ss_pred CCcCCcHHHHHHHHHHhhccC-CcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCC-CCEE
Confidence 556789999999998885322 3799999999 45667999999998888777777777778888999888876 8999
Q ss_pred eeeecCC----CCCCCeEEEEEEEeCHhhHhhccCC-------CCccccchHHhHHhcCceEEEEecce--EEEcCCHHH
Q 018060 159 KFVEKPK----LFVGNKINAGIYLLNPAVLDRIELR-------PTSIEKEVFPKIALEGKLFAMVLPGF--WMDIGQPRD 225 (361)
Q Consensus 159 ~~~ek~~----~~~~~~~~~Giyi~~~~~l~~l~~~-------~~~~~~d~l~~l~~~~~i~~~~~~~~--~~~i~t~~d 225 (361)
++.|||. ...+++.++|+|+|+++.|..+.+. ...+..|.++.+.. +..+.+.++ +..+++++|
T Consensus 152 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~---~~~~~v~~~~~~~~i~~~~d 228 (450)
T PRK14360 152 QIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDP---VMAVEVEDYQEINGINDRKQ 228 (450)
T ss_pred EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhh---ceEEecCCHHHhhcCCCHHH
Confidence 9999975 2346789999999999877554211 11222355555532 445556654 456999999
Q ss_pred HHHHHHHHHHhhhh----cccccccCCc-EEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECC
Q 018060 226 YITGLRLYLDSLRK----KSSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 300 (361)
Q Consensus 226 y~~a~~~~l~~~~~----~~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~ 300 (361)
+..+...+...... .....+++.. .+.+++.+++++.|++++.|++++.||++|.|++++.|.++.|+++|.|+
T Consensus 229 l~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~- 307 (450)
T PRK14360 229 LAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL- 307 (450)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-
Confidence 98887765543332 1222455554 57888899999999999999888999999999999999888888888885
Q ss_pred CCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 348 (361)
Q Consensus 301 ~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~ 348 (361)
++++.+++|++++.|++++.|.++++||+++.|++++.+.++.+..++
T Consensus 308 ~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~ 355 (450)
T PRK14360 308 YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGS 355 (450)
T ss_pred eeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCc
Confidence 567778888888888888888777888888888887777554444433
No 28
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1e-39 Score=283.56 Aligned_cols=233 Identities=74% Similarity=1.241 Sum_probs=209.2
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|++||||||+|+||+|+|...||+|+|++|+|||+|+++++..+|++++++++++..+.+.+++.+|....++++.+..+
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE 80 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence 89999999999999999999999999999999999999999999999999999999899999998775556777777666
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF 160 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (361)
..+.|++++++.+...+... .+++++++||++++.++.++++.|+++++++++++.+.+++..||++..++++++|.++
T Consensus 81 ~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~ 159 (233)
T cd06425 81 TEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERF 159 (233)
T ss_pred CCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEE
Confidence 67789999999999988532 23799999999999999999999999988899998888778889999998733899999
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060 161 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL 234 (361)
Q Consensus 161 ~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l 234 (361)
.|||....+++.++|+|+|++++++.+.....+...++++.+++++++.+|+++|+|.|+++|++|+++++.+|
T Consensus 160 ~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 160 VEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EECCCCCCCCEEEEEEEEECHHHHHhcccCcccchhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 99998777889999999999999999877666666789999999999999999999999999999999988654
No 29
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=8e-38 Score=277.75 Aligned_cols=229 Identities=25% Similarity=0.448 Sum_probs=192.1
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhh------------
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~------------ 68 (361)
|+|||||||+|+||+|+|..+||+|+|++|+|+|+|+++.+.++|+++|++++++..+.+.+|+....
T Consensus 4 mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~ 83 (297)
T TIGR01105 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcch
Confidence 79999999999999999999999999999999999999999999999999999999899999986411
Q ss_pred ---------hccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHHcCCc
Q 018060 69 ---------AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE 131 (361)
Q Consensus 69 ---------~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~--------~~l~~~~~~~~~~~~~ 131 (361)
..+++++.+..+.++.|++++++++.+++. ++ +|+++.||.+++ .++.++++.|.++++.
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~--~~-~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~ 160 (297)
T TIGR01105 84 QLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG--DN-PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC--CC-CEEEEECCeeccccccccchhHHHHHHHHHHHhCCc
Confidence 023567888888899999999999999993 33 799999999876 4789999999877765
Q ss_pred eEEEEEEccCCCCceeEEEc----CCCC---eEeeeeecCCCC---CCCeEEEEEEEeCHhhHhhccCC-C----Ccccc
Q 018060 132 ASIMVTKVDEPSKYGVVVME----ESTG---KVEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELR-P----TSIEK 196 (361)
Q Consensus 132 ~~i~~~~~~~~~~~~~v~~~----~~~~---~v~~~~ek~~~~---~~~~~~~Giyi~~~~~l~~l~~~-~----~~~~~ 196 (361)
++++....+++..||++..+ ++ + +|.++.|||..+ .++++++|+|+|++++++.++.. + .....
T Consensus 161 ~~~~~~~~~~~~~yGvv~~~~~~d~~-g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~lt 239 (297)
T TIGR01105 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEEcCCCCccceEEEecccccCC-CCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHH
Confidence 54444434578899999984 33 5 468999998643 47899999999999999988532 1 12224
Q ss_pred chHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060 197 EVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY 233 (361)
Q Consensus 197 d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~ 233 (361)
|+++.++++++++++.++|+|+|+++|++|++++..+
T Consensus 240 d~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred HHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence 8899999999999999999999999999999997654
No 30
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=7e-38 Score=275.81 Aligned_cols=230 Identities=42% Similarity=0.716 Sum_probs=199.8
Q ss_pred EEEEecC--CCcccCCCCCCCCCccceeCCcchHHHHHHHHHH-cCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEec
Q 018060 3 ALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 3 avIla~G--~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~-~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
||||||| +|+||+|+|..+||+|+|++|+|||+|+|+++.+ +|+++++|++++..+.+.+|+.+..+..++.+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 6899999 8999999999999999999999999999999999 699999999999888999999875445567777777
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCceeEEEcCCCCeE
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKV 157 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~~~~~~v 157 (361)
+.++.|++++++.+.+.+....+++|++++||++++.++.++++.|+++++++++++.+. +++..||++..++++++|
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v 160 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEV 160 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeE
Confidence 777889999999999988533344899999999999999999999999888888888775 457789999888333899
Q ss_pred eeeeecCCCCCCCeEEEEEEEeCHhhHhhccCC---------------------CCccccchHHhHHhcCceEEEEecce
Q 018060 158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR---------------------PTSIEKEVFPKIALEGKLFAMVLPGF 216 (361)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~---------------------~~~~~~d~l~~l~~~~~i~~~~~~~~ 216 (361)
.++.|||....++++++|+|+|++++++.+... ..++..|+++.++.++++++|+++|+
T Consensus 161 ~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~ 240 (257)
T cd06428 161 LHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDF 240 (257)
T ss_pred EEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCCe
Confidence 999999987788899999999999999877521 11234689999999999999999999
Q ss_pred EEEcCCHHHHHHHHHH
Q 018060 217 WMDIGQPRDYITGLRL 232 (361)
Q Consensus 217 ~~~i~t~~dy~~a~~~ 232 (361)
|.|++++++|+++|+.
T Consensus 241 w~dig~~~~~~~a~~~ 256 (257)
T cd06428 241 WSQIKTAGSAIYANRL 256 (257)
T ss_pred eecCCCHHHHHhHhhc
Confidence 9999999999999974
No 31
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=4.2e-37 Score=270.02 Aligned_cols=232 Identities=40% Similarity=0.728 Sum_probs=198.5
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcc-cChHHHHHHHHHhhhccCcEEEEec
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~-~~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
||||||||+|+||+|+|...||+|+|++|+ |||+|+|+++.++|++++++++. +..+.+.+++++ ...+++++.+..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~-~~~~~~~i~~i~ 79 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGS-GYKFGVKIEYIV 79 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTT-SGGGTEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccc-cccccccceeee
Confidence 799999999999999999999999999999 99999999999999999655555 677889999987 344567888888
Q ss_pred CCCCCCCchHHHHHHhhccCCC-CCcEEEEeCCeeeccCHHHHHHHHHHcCC--ceEEEEEEccCCCCceeEEEcCCCCe
Q 018060 80 ETEPLGTAGPLALARDKLIDDT-GEPFFVLNSDVISEYPFAEMIEFHKAHGG--EASIMVTKVDEPSKYGVVVMEESTGK 156 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~-~~~~lv~~~D~~~~~~l~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (361)
++.+.|++++++.+...+.... +++|++++||+++..++.++++.|.++++ .+++...+.++++.||++..+++ ++
T Consensus 80 ~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~ 158 (248)
T PF00483_consen 80 QPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDED-GR 158 (248)
T ss_dssp ESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETT-SE
T ss_pred cccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccc-ee
Confidence 8888899999999999995432 23599999999999999999999999987 45666667778889999999986 89
Q ss_pred EeeeeecCCCCC-CCeEEEEEEEeCHhhHhhcc------CCCCccccchHHhHHhcCc-eEEEEecc--eEEEcCCHHHH
Q 018060 157 VEKFVEKPKLFV-GNKINAGIYLLNPAVLDRIE------LRPTSIEKEVFPKIALEGK-LFAMVLPG--FWMDIGQPRDY 226 (361)
Q Consensus 157 v~~~~ek~~~~~-~~~~~~Giyi~~~~~l~~l~------~~~~~~~~d~l~~l~~~~~-i~~~~~~~--~~~~i~t~~dy 226 (361)
|.++.|||.... ++++++|+|+|++++|+.+. .+...+..|+++.++.++. +.++..++ +|+|+++|++|
T Consensus 159 V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~ 238 (248)
T PF00483_consen 159 VIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDY 238 (248)
T ss_dssp EEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHH
T ss_pred EEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHH
Confidence 999999999766 89999999999999998872 2344555789999999886 44778888 79999999999
Q ss_pred HHHHHHHHH
Q 018060 227 ITGLRLYLD 235 (361)
Q Consensus 227 ~~a~~~~l~ 235 (361)
++|++.+++
T Consensus 239 ~~a~~~~~~ 247 (248)
T PF00483_consen 239 LEANMDLLN 247 (248)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999987763
No 32
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.6e-36 Score=264.57 Aligned_cols=228 Identities=27% Similarity=0.421 Sum_probs=194.6
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEec
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
|+|||||||+|+||+|+|..+||+|+|++|+|||+|+|+++.++|++++++++++ ..+.+.+++.+ .+.+++++.+..
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~~~ 79 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITYAV 79 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEEee
Confidence 8999999999999999999999999999999999999999999999999998876 45678888865 344567777766
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
+....|++++++.+.+.+. . +++++++||++ ...++.++++.|.++++++++++.+..++..||.+.++++ ++|.
T Consensus 80 ~~~~~G~~~al~~a~~~~~--~-~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-g~v~ 155 (240)
T cd02538 80 QPKPGGLAQAFIIGEEFIG--D-DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVL 155 (240)
T ss_pred CCCCCCHHHHHHHHHHhcC--C-CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCC-CcEE
Confidence 6667899999999999883 2 37999999984 4567999999998878888888888878888999999976 8999
Q ss_pred eeeecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcCceEEEEec--ceEEEcCCHHHHHHHHH
Q 018060 159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLR 231 (361)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~i~~~~~~--~~~~~i~t~~dy~~a~~ 231 (361)
++.|||....+++.++|+|+|++++++.++.. ......++++.+++++++.++.++ |+|.|+++|++|+++++
T Consensus 156 ~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~ 235 (240)
T cd02538 156 SIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN 235 (240)
T ss_pred EEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHH
Confidence 99999987778899999999999999877421 112224889999998888887776 99999999999999998
Q ss_pred HH
Q 018060 232 LY 233 (361)
Q Consensus 232 ~~ 233 (361)
.+
T Consensus 236 ~~ 237 (240)
T cd02538 236 FV 237 (240)
T ss_pred HH
Confidence 54
No 33
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=4.7e-36 Score=267.25 Aligned_cols=229 Identities=25% Similarity=0.461 Sum_probs=193.2
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hh-----------
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE----------- 68 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~----------- 68 (361)
|+|||||||+|+||+|+|..+||+|+|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+.. |.
T Consensus 4 mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~ 83 (297)
T PRK10122 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchh
Confidence 789999999999999999999999999999999999999999999999999999999999999863 11
Q ss_pred ---------hccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHHcCCc
Q 018060 69 ---------AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE 131 (361)
Q Consensus 69 ---------~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~--------~~l~~~~~~~~~~~~~ 131 (361)
..+++++.+..+.++.|++++++.+.+++ .++ +|+++.||.++. .++.++++.|.+++++
T Consensus 84 ~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l--~~~-~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~ 160 (297)
T PRK10122 84 QLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAI--GDN-PFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHc--CCC-CEEEEECCeeccCccccccchhHHHHHHHHHHhCCc
Confidence 01356777888888899999999999998 333 799999999875 4799999999887766
Q ss_pred eEEEEEEccCCCCceeEEEc----CCCC---eEeeeeecCCCC---CCCeEEEEEEEeCHhhHhhccCC-----CCcccc
Q 018060 132 ASIMVTKVDEPSKYGVVVME----ESTG---KVEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELR-----PTSIEK 196 (361)
Q Consensus 132 ~~i~~~~~~~~~~~~~v~~~----~~~~---~v~~~~ek~~~~---~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~ 196 (361)
.+++....+++..||.+..+ ++ + +|.++.|||... .++++++|+|+|++++++.+... ......
T Consensus 161 ~~~~~~~~~~~~~yGvv~~d~~~~~~-g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~lt 239 (297)
T PRK10122 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEECCCCCCCceEEEecCcccCC-CCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHH
Confidence 55554444678899999986 23 4 789999998743 37899999999999999988542 112224
Q ss_pred chHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060 197 EVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY 233 (361)
Q Consensus 197 d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~ 233 (361)
|+++.++.++++.+|.++|+|+|+++|++|++++..+
T Consensus 240 d~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred HHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 8899999999999999999999999999999999876
No 34
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=4.7e-36 Score=265.78 Aligned_cols=229 Identities=22% Similarity=0.387 Sum_probs=196.1
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEec
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
|+|||||||.|+||+|+|...||+|+|++|||||+|+|+++..+|+++|++++.+ ..+.+++++.+ ...+++++.+..
T Consensus 4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i~y~~ 82 (292)
T PRK15480 4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNLQYKV 82 (292)
T ss_pred eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCceeEEEE
Confidence 7899999999999999999999999999999999999999999999999987765 55778888875 455788888888
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
+..+.|+++++..+.+++. ++ +++++.||. ++..++.++++.|.+++..+++++.+..+++.||++..|++ ++|.
T Consensus 83 q~~~~Gta~Al~~a~~~i~--~~-~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~-g~v~ 158 (292)
T PRK15480 83 QPSPDGLAQAFIIGEEFIG--GD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAI 158 (292)
T ss_pred CCCCCCHHHHHHHHHHHhC--CC-CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCC-CcEE
Confidence 8889999999999999983 33 688889997 45788999999998877788888888889999999999976 8999
Q ss_pred eeeecCCCCCCCeEEEEEEEeCHhhHhhccCC-C----CccccchHHhHHhcCceEE-EEecc-eEEEcCCHHHHHHHHH
Q 018060 159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-P----TSIEKEVFPKIALEGKLFA-MVLPG-FWMDIGQPRDYITGLR 231 (361)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-~----~~~~~d~l~~l~~~~~i~~-~~~~~-~~~~i~t~~dy~~a~~ 231 (361)
++.|||..+.+++.++|+|+|++++++.+..- + .....|+++.+++++++.. +...| .|.|++|+++|.+++.
T Consensus 159 ~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~ 238 (292)
T PRK15480 159 SLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN 238 (292)
T ss_pred EEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHH
Confidence 99999988889999999999999999877421 1 1122578888888888654 45567 5999999999999998
Q ss_pred HHH
Q 018060 232 LYL 234 (361)
Q Consensus 232 ~~l 234 (361)
.+.
T Consensus 239 ~~~ 241 (292)
T PRK15480 239 FIA 241 (292)
T ss_pred HHH
Confidence 775
No 35
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=1.2e-35 Score=263.02 Aligned_cols=228 Identities=23% Similarity=0.406 Sum_probs=195.5
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEecC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
+|||||||.|+||+|+|...||+|+|++|+|||+|+|+.+..+|+++|+|++.+ +.+.+++++.+ +..+++++.+..+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~~q 79 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYAVQ 79 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEEEc
Confidence 689999999999999999999999999999999999999999999999988864 66778888875 4567888988888
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK 159 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (361)
..+.|++++++.+.+++. + ++++++.||. ++..++.++++.|.+.+.++++++.+..++..||++..|++ ++|.+
T Consensus 80 ~~~~Gta~al~~a~~~l~--~-~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~-g~V~~ 155 (286)
T TIGR01207 80 PSPDGLAQAFIIGEDFIG--G-DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAIS 155 (286)
T ss_pred cCCCCHHHHHHHHHHHhC--C-CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCC-CeEEE
Confidence 889999999999999983 3 3788889997 56778999999998877788888888889999999999976 89999
Q ss_pred eeecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcCceEEEEe-cce-EEEcCCHHHHHHHHHH
Q 018060 160 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVL-PGF-WMDIGQPRDYITGLRL 232 (361)
Q Consensus 160 ~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~i~~~~~-~~~-~~~i~t~~dy~~a~~~ 232 (361)
+.|||....+++.++|+|+|++++++.+..- ......|+++.+++++.+....+ .|+ |.|++||++|++++..
T Consensus 156 i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~ 235 (286)
T TIGR01207 156 IEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNF 235 (286)
T ss_pred EEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHH
Confidence 9999987788999999999999998876421 12222488999999887766665 565 9999999999999876
Q ss_pred HH
Q 018060 233 YL 234 (361)
Q Consensus 233 ~l 234 (361)
+.
T Consensus 236 ~~ 237 (286)
T TIGR01207 236 IQ 237 (286)
T ss_pred HH
Confidence 64
No 36
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=3.3e-35 Score=257.52 Aligned_cols=226 Identities=30% Similarity=0.507 Sum_probs=192.8
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhc-cCcEE-----
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK-LGIKI----- 75 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~-~~~~i----- 75 (361)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++.++... .++++
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 689999999999999999999999999999999999999999999999999999888999998764211 11222
Q ss_pred --------------EEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccC
Q 018060 76 --------------ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 141 (361)
Q Consensus 76 --------------~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~ 141 (361)
.+..+.++.|++++++.+.+.+. +++|++++||+++..++.++++.|.+.+++++++.. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~--~~ 155 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV--QP 155 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--cC
Confidence 22334456799999999999983 238999999999999999999999988888887654 46
Q ss_pred CCCceeEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcC
Q 018060 142 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 221 (361)
Q Consensus 142 ~~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~ 221 (361)
+..||.+.+++ ++|.++.|||... ++++++|+|+|++++|+.+.....++..|+++.++.+++++++.++|+|.|++
T Consensus 156 ~~~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIg 232 (254)
T TIGR02623 156 PGRFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMD 232 (254)
T ss_pred CCcccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCC
Confidence 67899988875 6899999998643 67899999999999998887665566779999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 018060 222 QPRDYITGLRLYLD 235 (361)
Q Consensus 222 t~~dy~~a~~~~l~ 235 (361)
||++|.++++.+.+
T Consensus 233 t~~~~~~~~~~~~~ 246 (254)
T TIGR02623 233 TLRDKNYLEELWES 246 (254)
T ss_pred chHHHHHHHHHHHc
Confidence 99999999886654
No 37
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=2.3e-34 Score=250.66 Aligned_cols=229 Identities=33% Similarity=0.563 Sum_probs=197.5
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++..+.+++++.+. .+++.++.+..+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 79 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-SRFGVRITYILQ 79 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEEEEC
Confidence 8999999999999999999999999999999999999999999999999999999888999998762 234667777777
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF 160 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (361)
..+.|++++++.+...+. . +++++++||+++..++.++++.|.+++.++++++.+..++..|+.+..++ ++|.++
T Consensus 80 ~~~~g~~~sl~~a~~~i~--~-~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~ 154 (236)
T cd04189 80 EEPLGLAHAVLAARDFLG--D-EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRL 154 (236)
T ss_pred CCCCChHHHHHHHHHhcC--C-CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcC--CeEEEE
Confidence 777899999999999883 2 37999999999999999999999888888888888877778899888775 699999
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060 161 VEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYL 234 (361)
Q Consensus 161 ~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~~l 234 (361)
.|||....+.+.++|+|+|++++++.++.. ......++++.+++++ ++.++.++++|.+++||+||.++++.++
T Consensus 155 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 155 VEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred EECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence 999876667889999999999999877421 1122257888888775 4899999999999999999999998877
Q ss_pred H
Q 018060 235 D 235 (361)
Q Consensus 235 ~ 235 (361)
+
T Consensus 235 ~ 235 (236)
T cd04189 235 D 235 (236)
T ss_pred h
Confidence 5
No 38
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.5e-34 Score=249.12 Aligned_cols=218 Identities=28% Similarity=0.477 Sum_probs=188.1
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET 81 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 81 (361)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++|++++++..+.+.+++.+ ..+++.+.+..+.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~~~ 78 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISDEP 78 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999988999999876 3457777776665
Q ss_pred -CCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHH--cCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 82 -EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKA--HGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 82 -~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
...|++++++.++..+. . +++++++||+++..++.++++.|.+ .+..+++...+.+++..+|.+..+++ ++|.
T Consensus 79 ~~~~g~~~~l~~~~~~~~--~-~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~v~ 154 (221)
T cd06422 79 DELLETGGGIKKALPLLG--D-EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDAD-GRLR 154 (221)
T ss_pred CcccccHHHHHHHHHhcC--C-CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCC-CcEe
Confidence 57799999999999983 2 3899999999999999999999873 45556666666667778899988876 8999
Q ss_pred eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHH
Q 018060 159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITG 229 (361)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a 229 (361)
.+.|+|.. ++.++|+|+|+++++..+... .....|+++.+++++++.++.++|+|.|+++|++|.++
T Consensus 155 ~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~-~~~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 155 RGGGGAVA---PFTFTGIQILSPELFAGIPPG-KFSLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred ecccCCCC---ceEEEEEEEEcHHHHhhCCcC-cccHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99888653 789999999999999987644 23335889999999999999999999999999999864
No 39
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=4.8e-34 Score=254.69 Aligned_cols=229 Identities=27% Similarity=0.375 Sum_probs=191.9
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH---hh----hc---
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE---FE----AK--- 70 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~---~~----~~--- 70 (361)
|+|||+|||.|+||+|+|..+||+|+|++|+|+|+|+|+++.++|+++|+|++++..+.+.+|+.. |. ++
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 88 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR 88 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence 789999999999999999999999999999999999999999999999999999998999999964 11 00
Q ss_pred -----------cCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHHcCCc
Q 018060 71 -----------LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE 131 (361)
Q Consensus 71 -----------~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~--------~~l~~~~~~~~~~~~~ 131 (361)
.+..+.+..+....|++++++.+.+++ .+ ++|++++||.+++ .++.++++.|.+++++
T Consensus 89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~--~~-~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~ 165 (302)
T PRK13389 89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVV--GD-EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS 165 (302)
T ss_pred HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHc--CC-CCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence 023455666677789999999999887 33 3899999999764 6899999999887765
Q ss_pred eEEEEEEccCCCCceeEEEcC------CCCeEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCCC-----Cccccch
Q 018060 132 ASIMVTKVDEPSKYGVVVMEE------STGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEV 198 (361)
Q Consensus 132 ~~i~~~~~~~~~~~~~v~~~~------~~~~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~~-----~~~~~d~ 198 (361)
++++.+.+++..||.+..+. ++++|.++.|||. ...++++++|+|+|++++++.++... ..+..|+
T Consensus 166 -tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~ 244 (302)
T PRK13389 166 -QIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDA 244 (302)
T ss_pred -EEEEEEcccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHH
Confidence 67777778888999998763 1258999999997 34578999999999999998875322 1333588
Q ss_pred HHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060 199 FPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY 233 (361)
Q Consensus 199 l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~ 233 (361)
++.+++++++.+|.++|+|.|+++|++|++++..+
T Consensus 245 i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 245 IDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred HHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 99999989999999999999999999999998765
No 40
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=1.1e-33 Score=244.36 Aligned_cols=222 Identities=34% Similarity=0.622 Sum_probs=192.4
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 82 (361)
|||||||+|+||+|+|...||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+++.+. ..++.++.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIEPE 79 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEECCC
Confidence 69999999999999999999999999999999999999999999999999998888888888742 12355565566667
Q ss_pred CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeeeee
Q 018060 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE 162 (361)
Q Consensus 83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e 162 (361)
..|++++++.+++.+ .+ +++++++||+++..++.++++.|++.+.++++++.+.+++..++.+.++++ ++|..+.|
T Consensus 80 ~~G~~~~l~~a~~~~--~~-~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (223)
T cd06915 80 PLGTGGAIKNALPKL--PE-DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVE 155 (223)
T ss_pred CCcchHHHHHHHhhc--CC-CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCC-CeEEEEEe
Confidence 789999999999888 22 389999999988889999999998877888888888777778998888876 89999999
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHH
Q 018060 163 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITG 229 (361)
Q Consensus 163 k~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a 229 (361)
||....+.+.++|+|+|++++++.+......+..++++.++.++++.+++++++|.|+++++||.++
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 156 KGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred CCCCCCCCcEEEEEEEECHHHHhhCCccCCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 9876667889999999999999988655555567899999988899999999999999999999886
No 41
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=9.4e-34 Score=251.16 Aligned_cols=229 Identities=28% Similarity=0.419 Sum_probs=188.9
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hh-----hc----
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE-----AK---- 70 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~-----~~---- 70 (361)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+|+.+ |. +.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT 80 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence 899999999999999999999999999999999999999999999999999999998889988863 11 00
Q ss_pred ----------cCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc---CHHHHHHHHHHcCCceEEEEE
Q 018060 71 ----------LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVT 137 (361)
Q Consensus 71 ----------~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~---~l~~~~~~~~~~~~~~~i~~~ 137 (361)
.+.++.+..+..+.|++++++.+.+.+. . +++++++||.++.. ++.++++.|.+.++. ++++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~--~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 156 (267)
T cd02541 81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG--D-EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIAVE 156 (267)
T ss_pred HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC--C-CceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEEEE
Confidence 1346666677777899999999999984 2 38999999997654 499999999876654 34444
Q ss_pred Ec--cCCCCceeEEEcCC---CCeEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCC-----CCccccchHHhHHhc
Q 018060 138 KV--DEPSKYGVVVMEES---TGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALE 205 (361)
Q Consensus 138 ~~--~~~~~~~~v~~~~~---~~~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~-----~~~~~~d~l~~l~~~ 205 (361)
.. +++..||++.++++ +++|.++.|||. ...+.++++|+|+|++++|+.+... ......++++.++++
T Consensus 157 ~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~ 236 (267)
T cd02541 157 EVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEE 236 (267)
T ss_pred EcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhc
Confidence 43 35678999998852 258999999986 3567889999999999999888542 122334789999988
Q ss_pred CceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060 206 GKLFAMVLPGFWMDIGQPRDYITGLRLY 233 (361)
Q Consensus 206 ~~i~~~~~~~~~~~i~t~~dy~~a~~~~ 233 (361)
++++++.++|+|.|+++|++|++++..+
T Consensus 237 ~~v~~~~~~g~w~digt~~~y~~a~~~~ 264 (267)
T cd02541 237 EPVYAYVFEGKRYDCGNKLGYLKATVEF 264 (267)
T ss_pred CCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 8999999999999999999999999765
No 42
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=2.4e-33 Score=246.32 Aligned_cols=226 Identities=30% Similarity=0.522 Sum_probs=189.7
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhc-cCcEEEE----
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK-LGIKIIC---- 77 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~-~~~~i~~---- 77 (361)
|||||||+|+||+|+|...||+|+|++|+|||+|+++.+.++|+++|++++++..+.+++++.+..+. ..+++.+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR 80 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999864221 1122211
Q ss_pred ---ec------------CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCC
Q 018060 78 ---SQ------------ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP 142 (361)
Q Consensus 78 ---~~------------~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 142 (361)
.. +....|++++++.+.+.+. +.++|++++||++++.++.++++.|..++++++++... .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~--~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--~~ 156 (253)
T cd02524 81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG--DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--PP 156 (253)
T ss_pred eeeecccccccceeecccCcccccHHHHHHHHHhcC--CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--CC
Confidence 11 1224678999999999983 21389999999999999999999998888888776543 45
Q ss_pred CCceeEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCC
Q 018060 143 SKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQ 222 (361)
Q Consensus 143 ~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t 222 (361)
..|+.+.++++ ++|..+.|||... +...++|+|+|++++++.+.....++..|+++.++++++++++.++|+|.++++
T Consensus 157 ~~~g~v~~d~~-g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t 234 (253)
T cd02524 157 GRFGELDLDDD-GQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDT 234 (253)
T ss_pred CcccEEEECCC-CCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcC
Confidence 67899998886 8999999998754 568999999999999998865545555789999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 018060 223 PRDYITGLRLYL 234 (361)
Q Consensus 223 ~~dy~~a~~~~l 234 (361)
+++|.+++..+.
T Consensus 235 ~~~~~~~~~~~~ 246 (253)
T cd02524 235 LRDKQTLEELWN 246 (253)
T ss_pred HHHHHHHHHHHH
Confidence 999999987664
No 43
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=4.2e-33 Score=246.11 Aligned_cols=225 Identities=26% Similarity=0.407 Sum_probs=183.6
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH-hh--h--------
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE--A-------- 69 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~-~~--~-------- 69 (361)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+|+.+ |. .
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE 80 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence 899999999999999999999999999999999999999999999999999999998999999863 10 0
Q ss_pred ---------ccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc---CHHHHHHHHHHcCCceEEEEE
Q 018060 70 ---------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVT 137 (361)
Q Consensus 70 ---------~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~---~l~~~~~~~~~~~~~~~i~~~ 137 (361)
.....+.+..+..+.|++++++.+.+.+ .+ +++++++||+++.. ++.++++.|.+++++. +++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~--~~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~ 156 (260)
T TIGR01099 81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFV--GD-EPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE 156 (260)
T ss_pred HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhh--CC-CCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence 0013455555667789999999999988 33 38999999997653 6999999998877764 4443
Q ss_pred Ec--cCCCCceeEEEcC---CCCeEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCCC-----CccccchHHhHHhc
Q 018060 138 KV--DEPSKYGVVVMEE---STGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALE 205 (361)
Q Consensus 138 ~~--~~~~~~~~v~~~~---~~~~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~~-----~~~~~d~l~~l~~~ 205 (361)
.. +++..||++..+. ++++|..+.|||. ...++++++|+|+|++++|+.+.... .....|+++.++++
T Consensus 157 ~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~ 236 (260)
T TIGR01099 157 EVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEK 236 (260)
T ss_pred ECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhc
Confidence 33 4567899998862 2269999999985 34567899999999999998885321 12234789999998
Q ss_pred CceEEEEecceEEEcCCHHHHHHH
Q 018060 206 GKLFAMVLPGFWMDIGQPRDYITG 229 (361)
Q Consensus 206 ~~i~~~~~~~~~~~i~t~~dy~~a 229 (361)
+++++|.++|+|.|+++|++|+++
T Consensus 237 ~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 237 ETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred CCEEEEEcceEEEeCCCHHHHhhC
Confidence 999999999999999999999874
No 44
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.5e-32 Score=236.68 Aligned_cols=219 Identities=35% Similarity=0.662 Sum_probs=185.0
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 82 (361)
|||||||+|+||+|+|...||+|+|++|+|||+|+++++..+++++++|++++..+.+++++.+. ..++.++.+..+..
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVREDK 79 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEECCC
Confidence 69999999999999999999999999999999999999999999999999999888888888752 23456666666656
Q ss_pred CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeeeee
Q 018060 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE 162 (361)
Q Consensus 83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e 162 (361)
+.|+++++..+.+.. .+++++++||++...++.++++.|++++.++++++.+......|+++..++ ++|.++.|
T Consensus 80 ~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~~e 153 (220)
T cd06426 80 PLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG--GRITSIEE 153 (220)
T ss_pred CCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECC--CEEEEEEE
Confidence 778999987776554 238999999999999999999999888888888877765566789888874 89999999
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHH
Q 018060 163 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGL 230 (361)
Q Consensus 163 k~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~ 230 (361)
||.. +.+.++|+|+|++.+++.+.+.......++++.+++++ .+.+++++++|.+++||+||.+++
T Consensus 154 k~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 154 KPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred CCCC--CCeEEEEEEEEcHHHHhhcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 8754 56889999999999999886554333457889888775 599999999999999999998874
No 45
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=1.4e-32 Score=236.47 Aligned_cols=214 Identities=40% Similarity=0.741 Sum_probs=187.7
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 82 (361)
|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|++++++++++..+.+++++.+. ..++..+.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQEE 79 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeCCC
Confidence 69999999999999999999999999999999999999999999999999999888888888752 22456676666666
Q ss_pred CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeeeee
Q 018060 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE 162 (361)
Q Consensus 83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e 162 (361)
+.|++++++.+.+.+ .. +++++++||++++.++.++++.|.++++++++++.+.+++..|+++..+++ ++|.++.|
T Consensus 80 ~~g~~~al~~~~~~~--~~-~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (217)
T cd04181 80 PLGTAGAVRNAEDFL--GD-DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVE 155 (217)
T ss_pred CCccHHHHHHhhhhc--CC-CCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCC-CcEEEEEE
Confidence 789999999999988 22 389999999999999999999999888888988888877888999999886 89999999
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHhhccCCC---CccccchHHhHHhcCceEEEEecceEEEcC
Q 018060 163 KPKLFVGNKINAGIYLLNPAVLDRIELRP---TSIEKEVFPKIALEGKLFAMVLPGFWMDIG 221 (361)
Q Consensus 163 k~~~~~~~~~~~Giyi~~~~~l~~l~~~~---~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~ 221 (361)
||.....++.++|+|+|++++++.+.... .++..++++.++++.++++++++|+|.|++
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 156 KPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred CCCCCCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence 98866678999999999999998876443 455678999999889999999999999985
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.7e-31 Score=221.44 Aligned_cols=230 Identities=29% Similarity=0.433 Sum_probs=193.3
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHh----------h--
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF----------E-- 68 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~----------~-- 68 (361)
++|||+|||.|+||.|.|+..||-|||+-+||+|+|+++.+.++|++++++|++.+...+.+||... .
T Consensus 5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~ 84 (291)
T COG1210 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKR 84 (291)
T ss_pred cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHH
Confidence 4799999999999999999999999999999999999999999999999999999888888887630 0
Q ss_pred ------h--ccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc---CHHHHHHHHHHcCCceEEEEE
Q 018060 69 ------A--KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVT 137 (361)
Q Consensus 69 ------~--~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~---~l~~~~~~~~~~~~~~~i~~~ 137 (361)
+ ...+++.++.|.++.|.++|+++|.+++ +++ +|.|+.+|.+... .++++++.+.+.+.+ ++.+.
T Consensus 85 ~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~v--g~E-pFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s-vi~v~ 160 (291)
T COG1210 85 ELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFV--GDE-PFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVE 160 (291)
T ss_pred HHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhc--CCC-ceEEEeCCeeecCCchHHHHHHHHHHHhCCc-EEEEE
Confidence 1 1246788999999999999999999999 544 9999999996654 289999999888764 34444
Q ss_pred Ec--cCCCCceeEE----EcCCCCeEeeeeecCC--CCCCCeEEEEEEEeCHhhHhhccCCCC----ccc-cchHHhHHh
Q 018060 138 KV--DEPSKYGVVV----MEESTGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRPT----SIE-KEVFPKIAL 204 (361)
Q Consensus 138 ~~--~~~~~~~~v~----~~~~~~~v~~~~ek~~--~~~~~~~~~Giyi~~~~~l~~l~~~~~----~~~-~d~l~~l~~ 204 (361)
+. ++.+.||++. .+.+.-+|..+.|||. ...|++.-.|.|+|++++|+.|+.... .++ .|.+..|++
T Consensus 161 ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~ 240 (291)
T COG1210 161 EVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLK 240 (291)
T ss_pred ECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHh
Confidence 44 6778899997 3332248999999996 467999999999999999999975422 222 478999999
Q ss_pred cCceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060 205 EGKLFAMVLPGFWMDIGQPRDYITGLRLYL 234 (361)
Q Consensus 205 ~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l 234 (361)
...++++.+.|..+|+++...|++++..+.
T Consensus 241 ~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~ 270 (291)
T COG1210 241 KEPVLAYVFEGKRYDCGSKLGYIKANVEFA 270 (291)
T ss_pred hCcEEEEEecccEEccCCcccHHHHHHHHH
Confidence 999999999999999999999999987654
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=1.7e-29 Score=216.67 Aligned_cols=180 Identities=22% Similarity=0.345 Sum_probs=147.9
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhh---cc-CcEEE
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA---KL-GIKII 76 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~---~~-~~~i~ 76 (361)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|+++|+|++++..+.+++|+.++.. .+ +..+.
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~ 80 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI 80 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence 689999999999999999999999999999999999999999999999999999988999999987321 11 23455
Q ss_pred EecCCCCCCCchHHHHHH--hhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHc-----CCceEEEEEEccCCC------
Q 018060 77 CSQETEPLGTAGPLALAR--DKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH-----GGEASIMVTKVDEPS------ 143 (361)
Q Consensus 77 ~~~~~~~~g~~~al~~~~--~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~-----~~~~~i~~~~~~~~~------ 143 (361)
+..+.+..+++++++... ..+ . ++|++++||+++..++.++++.|+++ ++.+++++.+.+++.
T Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~---~-~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~ 156 (217)
T cd04197 81 IIMSEDCRSLGDALRDLDAKGLI---R-GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTG 156 (217)
T ss_pred EEeCCCcCccchHHHHHhhcccc---C-CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCC
Confidence 556666778888886543 233 2 37999999999999999999999874 677888887765544
Q ss_pred CceeEEEcCCCCeEeeeeecCCCC--------------------CCCeEEEEEEEeCHhhH
Q 018060 144 KYGVVVMEESTGKVEKFVEKPKLF--------------------VGNKINAGIYLLNPAVL 184 (361)
Q Consensus 144 ~~~~v~~~~~~~~v~~~~ek~~~~--------------------~~~~~~~Giyi~~~~~l 184 (361)
.++++.+++++++|..+.|||... .+++.++|+|+|+++++
T Consensus 157 ~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 157 EEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 257888887668999999997632 27789999999999874
No 48
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=1.2e-28 Score=213.55 Aligned_cols=214 Identities=29% Similarity=0.459 Sum_probs=166.8
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 82 (361)
|||||||+|+||+|+|...||+|+|++|+|||+|+++++.++|+++|+|++++..+.+.+++.++ .++.+.+.++..
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPDYA 77 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcchh
Confidence 69999999999999999999999999999999999999999999999999999888888888753 356666555555
Q ss_pred CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCC--CCceeEEEcCCCCeEeee
Q 018060 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP--SKYGVVVMEESTGKVEKF 160 (361)
Q Consensus 83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~v~~~~~~~~v~~~ 160 (361)
+.|++++++.+.+.+ . +++++++||++++. ++++.|.+++++.++++.+..+. ..++... +++ +++..+
T Consensus 78 ~~g~~~s~~~~~~~~--~--~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~ 148 (229)
T cd02523 78 ETNNIYSLYLARDFL--D--EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDL-DDA-GVLLGI 148 (229)
T ss_pred hhCcHHHHHHHHHHc--C--CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeee-cCc-cceEee
Confidence 689999999999888 2 38999999998764 56677777777788777663222 2233222 222 688889
Q ss_pred eecCCCCC-CCeEEEEEEEeCHhhHhhccC---------CCCccccchHHhHHhcCceE--EEEecceEEEcCCHHHHHH
Q 018060 161 VEKPKLFV-GNKINAGIYLLNPAVLDRIEL---------RPTSIEKEVFPKIALEGKLF--AMVLPGFWMDIGQPRDYIT 228 (361)
Q Consensus 161 ~ek~~~~~-~~~~~~Giyi~~~~~l~~l~~---------~~~~~~~d~l~~l~~~~~i~--~~~~~~~~~~i~t~~dy~~ 228 (361)
.+||.... ..+.++|+|+|++++++.+.+ ....+..++++.++++..+. .+.. ++|.|+++++||.+
T Consensus 149 ~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~ 227 (229)
T cd02523 149 ISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLER 227 (229)
T ss_pred cccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHh
Confidence 99886543 568999999999999876632 12334458899888744444 4444 89999999999987
Q ss_pred H
Q 018060 229 G 229 (361)
Q Consensus 229 a 229 (361)
+
T Consensus 228 a 228 (229)
T cd02523 228 A 228 (229)
T ss_pred h
Confidence 6
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.96 E-value=3.5e-28 Score=211.01 Aligned_cols=215 Identities=21% Similarity=0.371 Sum_probs=166.6
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccCh---HHHHHHHHHhhhccCcEEEEec
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP---EVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~---~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
+||||||+|+||+|+|...||+|+|++|+|||+|+|+.+.++|+++++++++... ..+..++... ..++.+.+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~~- 77 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVEL- 77 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEEe-
Confidence 4899999999999999999999999999999999999999999999999887532 1222233221 124555433
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEee
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK 159 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (361)
+..+.|++++++.+...+. ..++|++++||+++..++.++++.|.+.+...++++... +...|+++..+++ ++|..
T Consensus 78 ~~~~~g~~~~l~~a~~~l~--~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~v~~d~~-~~v~~ 153 (231)
T cd04183 78 DGETLGAACTVLLAADLID--NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS-SHPRWSYVKLDEN-GRVIE 153 (231)
T ss_pred CCCCCcHHHHHHHHHhhcC--CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC-CCCCeEEEEECCC-CCEEE
Confidence 4457899999999999883 224899999999999999888888877666666666555 5567999988876 89999
Q ss_pred eeecCCCCCCCeEEEEEEEeCHh-hH-hhccC--------CCCccccchHHhHHhcC-ceEEEEe-cceEEEcCCHHHH
Q 018060 160 FVEKPKLFVGNKINAGIYLLNPA-VL-DRIEL--------RPTSIEKEVFPKIALEG-KLFAMVL-PGFWMDIGQPRDY 226 (361)
Q Consensus 160 ~~ek~~~~~~~~~~~Giyi~~~~-~l-~~l~~--------~~~~~~~d~l~~l~~~~-~i~~~~~-~~~~~~i~t~~dy 226 (361)
+.||+. .+.+.++|+|+|+++ .+ +.+.+ +...+..++++.+++++ ++.++.+ +++|.|+++|+||
T Consensus 154 ~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 154 TAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred eEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 988843 467889999999987 33 33321 12223358899998876 4889998 6899999999986
No 50
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.96 E-value=2.7e-28 Score=206.66 Aligned_cols=183 Identities=27% Similarity=0.457 Sum_probs=151.5
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccC-------cE
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLG-------IK 74 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~-------~~ 74 (361)
|||||||+|+||+|+|...||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+++.+. ..++ +.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLF 79 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEE
Confidence 69999999999999999999999999999 999999999999999999999999999999998751 2222 23
Q ss_pred EEEec----CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEE
Q 018060 75 IICSQ----ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM 150 (361)
Q Consensus 75 i~~~~----~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~ 150 (361)
+.+.. +..+.|++++++.+.+.+...+.++|++++||++...++.++++.|+++++.+++++.
T Consensus 80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------------- 146 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------------- 146 (200)
T ss_pred EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-------------
Confidence 33321 3457899999999999885333358999999999999999999999888777776643
Q ss_pred cCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhc-cC----CCCccccchHHhHHhcCceEEEEecceEEEc
Q 018060 151 EESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-EL----RPTSIEKEVFPKIALEGKLFAMVLPGFWMDI 220 (361)
Q Consensus 151 ~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l-~~----~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i 220 (361)
.++|+|+|+++++..+ +. +..++..|+++.++++++++++.++|+|.|+
T Consensus 147 ---------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 147 ---------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred ---------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 4689999999988543 32 2345557999999988999999999999985
No 51
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=1.2e-26 Score=198.54 Aligned_cols=180 Identities=28% Similarity=0.522 Sum_probs=146.8
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccCh-HHHHHHHHHhh--hccCcEEEE
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFE--AKLGIKIIC 77 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~l~~~~--~~~~~~i~~ 77 (361)
|||||||||+|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++.. +.+++++.++. ...+..+.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 899999999999999999999999999999999999999999999999999999744 56777777532 122234455
Q ss_pred ecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccC-------------CCC
Q 018060 78 SQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE-------------PSK 144 (361)
Q Consensus 78 ~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-------------~~~ 144 (361)
..+....|++++++.+.+.+ . ++|++++||.+++.++.++++.|+++++.+++++.+... ...
T Consensus 81 ~~~~~~~gt~~al~~~~~~i--~--~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04198 81 IVLDEDMGTADSLRHIRKKI--K--KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADE 156 (214)
T ss_pred ecCCCCcChHHHHHHHHhhc--C--CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCC
Confidence 55667789999999999887 2 279999999999999999999999988888888776421 124
Q ss_pred ceeEEEcCCCCeEeeeeec-----------------CC-CCCCCeEEEEEEEeCHhhH
Q 018060 145 YGVVVMEESTGKVEKFVEK-----------------PK-LFVGNKINAGIYLLNPAVL 184 (361)
Q Consensus 145 ~~~v~~~~~~~~v~~~~ek-----------------~~-~~~~~~~~~Giyi~~~~~l 184 (361)
+.++.++++++++..+... |+ ...+++.++|+|+|+++++
T Consensus 157 ~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 157 RDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 6788888887899887542 11 2357789999999998864
No 52
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=2.3e-26 Score=196.92 Aligned_cols=180 Identities=27% Similarity=0.432 Sum_probs=143.4
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhh-----hccCcEE
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE-----AKLGIKI 75 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~-----~~~~~~i 75 (361)
|||||||||.|+||.|+|...||+|+|++|+|||+|+++++.++|+++++|+++++.+.+.+++.+.. ...++.+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 79999999999999999999999999999999999999999999999999999998888888887521 1123445
Q ss_pred EEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHH--HHHcCCceEEEEEEc--cC-------CCC
Q 018060 76 ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEF--HKAHGGEASIMVTKV--DE-------PSK 144 (361)
Q Consensus 76 ~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~--~~~~~~~~~i~~~~~--~~-------~~~ 144 (361)
.+..+....|++++++.+.+.+ . ++|++++||++++.++.+++++ +...+..+++++... .. ...
T Consensus 81 ~~~~~~~~~Gta~~l~~~~~~i--~--~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
T cd02507 81 ITSDLCESAGDALRLRDIRGLI--R--SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEE 156 (216)
T ss_pred EEccCCCCCccHHHHHHHhhcC--C--CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCC
Confidence 5556667889999999999888 2 2799999999999999999965 333444555544433 22 345
Q ss_pred ceeEEEcCCC--CeEeeeeecCCC------------------CCCCeEEEEEEEeCHhhH
Q 018060 145 YGVVVMEEST--GKVEKFVEKPKL------------------FVGNKINAGIYLLNPAVL 184 (361)
Q Consensus 145 ~~~v~~~~~~--~~v~~~~ek~~~------------------~~~~~~~~Giyi~~~~~l 184 (361)
++++.+|+++ .++.++.|++.. ..+++.++|+|+|+++++
T Consensus 157 ~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 157 EDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 7889999876 566677665442 346789999999999864
No 53
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.94 E-value=1.4e-25 Score=194.48 Aligned_cols=212 Identities=25% Similarity=0.440 Sum_probs=167.4
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 82 (361)
|||||||.|+||++ ..||+|+|++|+|||+|+++++.++++++++++++++.+.+.+++.++ ++.+ ..+..
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~----~~~~--~~~~~ 71 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANP----NVEF--VLQEE 71 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCC----CcEE--EECCC
Confidence 69999999999987 789999999999999999999999999999999998878888777642 3443 34455
Q ss_pred CCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF 160 (361)
Q Consensus 83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (361)
..|++++++.+...+.. +.++|++++||. +...++.++++.|.+.++++++...+..++..++.+..+++ ++|..+
T Consensus 72 ~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~v~~~ 149 (229)
T cd02540 72 QLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRI 149 (229)
T ss_pred CCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCC-CCEEEE
Confidence 67999999999998843 234899999999 34567899999988777777777777777878888877765 899999
Q ss_pred eecCCCC----CCCeEEEEEEEeCHhhH-hhccC------CCCccccchHHhHHhcC-ceEEEEecc--eEEEcCCHHH
Q 018060 161 VEKPKLF----VGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEG-KLFAMVLPG--FWMDIGQPRD 225 (361)
Q Consensus 161 ~ek~~~~----~~~~~~~Giyi~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~-~i~~~~~~~--~~~~i~t~~d 225 (361)
.|+|... ...+.++|+|+|+++.+ +.++. +...+..++++.+++.+ ++.++.++| .|+.+++|.+
T Consensus 150 ~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 150 VEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred EECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHh
Confidence 9986422 13678999999998755 44432 12334468899998875 588998875 5777888876
No 54
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.94 E-value=1.2e-25 Score=198.86 Aligned_cols=220 Identities=26% Similarity=0.347 Sum_probs=158.7
Q ss_pred CeEEEEecCCCcccCCCCC-CCCCccceeCC-cchHHHHHHHHHHcC-CCEEEEEcccCh-HHHHHHHHHhhhccCcEEE
Q 018060 1 MKALILVGGFGTRLRPLTL-SVPKPLVEFAN-KPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKII 76 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~-~~pK~llpl~g-~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~ 76 (361)
|++||||||.|+||+|+|. ..||+|+|++| +|||+++++++...+ +++++|++++.. +.+++++.+. ...+.
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~----~~~~~ 76 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEG----LPEEN 76 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhc----CCCce
Confidence 8999999999999999996 79999999998 999999999999984 999999999743 4566666541 12334
Q ss_pred EecCCCCCCCchHHHHHHhhccC-CCCCcEEEEeCCeeec--cCHHHHHHHHHH---cCCceEEEEEEccCCCCceeEEE
Q 018060 77 CSQETEPLGTAGPLALARDKLID-DTGEPFFVLNSDVISE--YPFAEMIEFHKA---HGGEASIMVTKVDEPSKYGVVVM 150 (361)
Q Consensus 77 ~~~~~~~~g~~~al~~~~~~~~~-~~~~~~lv~~~D~~~~--~~l~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~v~~ 150 (361)
++.++...|++.++..+...+.. ..++.++++++|++.. .++.++++.+.+ .+..+++...+......||++..
T Consensus 77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~ 156 (274)
T cd02509 77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEA 156 (274)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEe
Confidence 45566678999999999888743 2234799999999765 446666655432 45567777777766688999999
Q ss_pred cCCC-C---eEeeeeecCCCC-----C---CCeEEEEEEEeCHhhHh-hccC-CC---------------C---ccccch
Q 018060 151 EEST-G---KVEKFVEKPKLF-----V---GNKINAGIYLLNPAVLD-RIEL-RP---------------T---SIEKEV 198 (361)
Q Consensus 151 ~~~~-~---~v~~~~ek~~~~-----~---~~~~~~Giyi~~~~~l~-~l~~-~~---------------~---~~~~d~ 198 (361)
+++. + +|.+|.|||... . ..++++|+|+|+++.+. .|+. .+ . .+..+.
T Consensus 157 ~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (274)
T cd02509 157 GEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEA 236 (274)
T ss_pred CCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHH
Confidence 8642 2 899999999732 1 24789999999977553 2210 00 0 001122
Q ss_pred HHh----------HHhcCceEEEEecceEEEcCCHH
Q 018060 199 FPK----------IALEGKLFAMVLPGFWMDIGQPR 224 (361)
Q Consensus 199 l~~----------l~~~~~i~~~~~~~~~~~i~t~~ 224 (361)
++. |-+...+.+++.+..|.|++++.
T Consensus 237 ~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~ 272 (274)
T cd02509 237 FAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWD 272 (274)
T ss_pred HhhCCCcccchHhheeCCCcEEEecCCCcCcccCcc
Confidence 222 22345577788888899999865
No 55
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.93 E-value=3.7e-24 Score=187.37 Aligned_cols=217 Identities=22% Similarity=0.268 Sum_probs=156.0
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET 81 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 81 (361)
.+||||+|.++||. +|+|+|++|+|||+|+++.+.++++++++|+++. +.+.+++.++ ++++.+..+.
T Consensus 4 ~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~~----~~~v~~~~~~ 71 (245)
T PRK05450 4 LIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEAF----GGEVVMTSPD 71 (245)
T ss_pred EEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHHc----CCEEEECCCc
Confidence 48999999999993 5999999999999999999999999999998864 5566666543 5666665555
Q ss_pred CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEc------cCCCCceeEEEcCC
Q 018060 82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKV------DEPSKYGVVVMEES 153 (361)
Q Consensus 82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~ 153 (361)
...|+.. +..+...+...+.+.+++++||+ +. ...++++++.+.+++.+.++++.+. .++..++++ ++++
T Consensus 72 ~~~gt~~-~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~ 149 (245)
T PRK05450 72 HPSGTDR-IAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDAD 149 (245)
T ss_pred CCCchHH-HHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCC
Confidence 5556554 33344443212234689999999 44 4568999998877666666665554 345556654 7776
Q ss_pred CCeEeeeeecCCC----------CCCCeEEEEEEEeCHhhHhhccCCCCc-c---cc-chHHhHHhcCceEEEEecc-eE
Q 018060 154 TGKVEKFVEKPKL----------FVGNKINAGIYLLNPAVLDRIELRPTS-I---EK-EVFPKIALEGKLFAMVLPG-FW 217 (361)
Q Consensus 154 ~~~v~~~~ek~~~----------~~~~~~~~Giyi~~~~~l~~l~~~~~~-~---~~-d~l~~l~~~~~i~~~~~~~-~~ 217 (361)
|+|.+|.|+|.. ..+++.++|+|+|+++.++.+...... + .. ++++.+....+++++..++ +|
T Consensus 150 -g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w 228 (245)
T PRK05450 150 -GRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPS 228 (245)
T ss_pred -CcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCCCCC
Confidence 899999998732 235889999999999999877532211 1 11 1233333344688999986 99
Q ss_pred EEcCCHHHHHHHHHHH
Q 018060 218 MDIGQPRDYITGLRLY 233 (361)
Q Consensus 218 ~~i~t~~dy~~a~~~~ 233 (361)
.++++|+||.++++.+
T Consensus 229 ~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 229 IGVDTPEDLERVRALL 244 (245)
T ss_pred CCcCCHHHHHHHHHHh
Confidence 9999999999998643
No 56
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=2.3e-24 Score=177.58 Aligned_cols=222 Identities=26% Similarity=0.411 Sum_probs=152.9
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEc-ccChHHHHHHHHHhhhccCcEEEEec
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~-~~~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
|+|||||||.|+||+| +.||||+.++|+++|+|++++|.+.|++++++|+ ++..+.++.++.+++. ..++.+.+
T Consensus 4 ~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~--~~~iv~N~ 78 (239)
T COG1213 4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPF--NAKIVINS 78 (239)
T ss_pred eeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCCc--ceEEEeCC
Confidence 7899999999999999 8999999999999999999999999999999999 6677778888876532 45677777
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEE-ccC-CCCceeEEEcCCCCeE
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK-VDE-PSKYGVVVMEESTGKV 157 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~-~~~-~~~~~~v~~~~~~~~v 157 (361)
.++..+++.+++.+.+.+. + .|+++.||++++.. +++...+.++...++... ... ...-..+. .++ |++
T Consensus 79 ~y~ktN~~~Sl~~akd~~~--~--~fii~~sD~vye~~---~~e~l~~a~~~~li~d~~~~~~~~~ea~kv~-~e~-G~i 149 (239)
T COG1213 79 DYEKTNTGYSLLLAKDYMD--G--RFILVMSDHVYEPS---ILERLLEAPGEGLIVDRRPRYVGVEEATKVK-DEG-GRI 149 (239)
T ss_pred CcccCCceeEEeeehhhhc--C--cEEEEeCCEeecHH---HHHHHHhCcCCcEEEeccccccccCceeEEE-ecC-CEE
Confidence 7777778999999999994 3 69999999999855 333333333333443322 111 11222333 343 888
Q ss_pred eeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEe-----cceEEEcCCHHHHHHHHHH
Q 018060 158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVL-----PGFWMDIGQPRDYITGLRL 232 (361)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~-----~~~~~~i~t~~dy~~a~~~ 232 (361)
.++..+-+ .-+..++|++.|+..++..+.+....-..-.+..+...-.+..... ..+|.++|+|||+.++.+.
T Consensus 150 ~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~ 227 (239)
T COG1213 150 VEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKY 227 (239)
T ss_pred ehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhhhHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHH
Confidence 88865433 3456799999999998865531110000001122222212222222 3589999999999999887
Q ss_pred HHHhhh
Q 018060 233 YLDSLR 238 (361)
Q Consensus 233 ~l~~~~ 238 (361)
......
T Consensus 228 ~~~~~~ 233 (239)
T COG1213 228 LVPNIK 233 (239)
T ss_pred HHHHHH
Confidence 765443
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.93 E-value=5.1e-24 Score=185.78 Aligned_cols=216 Identities=24% Similarity=0.303 Sum_probs=157.0
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEec
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
|.+||||+|.++||+ ||+|+|++|+|||+|+++.+.++ ++++|+|+++. +.+.+++.++ ++++.+..
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~~----~~~~~~~~ 69 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVESF----GGKVVMTS 69 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHHc----CCEEEEcC
Confidence 468999999999995 59999999999999999999998 89999998864 5667776543 56666555
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHc-CCceEEEEEEccCCC---Ccee--EEEc
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAH-GGEASIMVTKVDEPS---KYGV--VVME 151 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~-~~~~~i~~~~~~~~~---~~~~--v~~~ 151 (361)
+....|+++ +..+...+.. ..+.++++.||+ +...+++.+++.|.+. +.++++++.+..++. .++. +..+
T Consensus 70 ~~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 147 (239)
T cd02517 70 PDHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD 147 (239)
T ss_pred cccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC
Confidence 555557764 5566655632 134799999998 4455689999988766 566777777765444 3333 5566
Q ss_pred CCCCeEeeeeecCC-------CCCCCeEEEEEEEeCHhhHhhccCCC-Cccc-cchHH--hHHhcCc-eEEEEecceEEE
Q 018060 152 ESTGKVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIELRP-TSIE-KEVFP--KIALEGK-LFAMVLPGFWMD 219 (361)
Q Consensus 152 ~~~~~v~~~~ek~~-------~~~~~~~~~Giyi~~~~~l~~l~~~~-~~~~-~d~l~--~l~~~~~-i~~~~~~~~~~~ 219 (361)
++ ++|..+.++|. ...+++.++|+|+|++++++.+.... ..+. .+.+. .++.++. +.++..++.|.+
T Consensus 148 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~ 226 (239)
T cd02517 148 KD-GYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIG 226 (239)
T ss_pred CC-CCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCC
Confidence 65 88988876542 12367899999999999998775421 1111 12222 3455554 888888889999
Q ss_pred cCCHHHHHHHHH
Q 018060 220 IGQPRDYITGLR 231 (361)
Q Consensus 220 i~t~~dy~~a~~ 231 (361)
+++|+||.++++
T Consensus 227 i~t~~dl~~a~~ 238 (239)
T cd02517 227 VDTPEDLERVEA 238 (239)
T ss_pred CCCHHHHHHHHh
Confidence 999999999874
No 58
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.92 E-value=4.8e-24 Score=201.51 Aligned_cols=226 Identities=23% Similarity=0.330 Sum_probs=160.0
Q ss_pred CeEEEEecCCCcccCCCCCC-CCCccceeCC-cchHHHHHHHHHHcCCCEEEEEcccCh-HHHHHHHHHhhhccCcE-EE
Q 018060 1 MKALILVGGFGTRLRPLTLS-VPKPLVEFAN-KPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIK-II 76 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~-~pK~llpl~g-~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~-i~ 76 (361)
|++||||||.|+||+|+|.. .||+|+|+.| +|||+++++++.+.++++++|+++... ..+++.+.++ +.+ ..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~----~~~~~~ 76 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI----GKLASN 76 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc----CCCcce
Confidence 78999999999999999986 8999999976 899999999999989999999998743 3445555543 322 23
Q ss_pred EecCCCCCCCchHHHHHHhhccC--CCCCcEEEEeCCeeecc--CHHHHHHHH---HHcCCceEEEEEEccCCCCceeEE
Q 018060 77 CSQETEPLGTAGPLALARDKLID--DTGEPFFVLNSDVISEY--PFAEMIEFH---KAHGGEASIMVTKVDEPSKYGVVV 149 (361)
Q Consensus 77 ~~~~~~~~g~~~al~~~~~~~~~--~~~~~~lv~~~D~~~~~--~l~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~ 149 (361)
+..++...|++.++..+...+.. ..++.+++++||++... +|.++++.+ .+.+..+++...+......||++.
T Consensus 77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~ 156 (468)
T TIGR01479 77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIR 156 (468)
T ss_pred EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEE
Confidence 55667778999998887766532 22335899999986543 478887764 333444555555555667899999
Q ss_pred EcC-----CCCeEeeeeecCCCCC--------CCeEEEEEEEeCHhhH------------hhccCC-----C----Cccc
Q 018060 150 MEE-----STGKVEKFVEKPKLFV--------GNKINAGIYLLNPAVL------------DRIELR-----P----TSIE 195 (361)
Q Consensus 150 ~~~-----~~~~v~~~~ek~~~~~--------~~~~~~Giyi~~~~~l------------~~l~~~-----~----~~~~ 195 (361)
.++ +.++|.+|.|||.... ..++++|+|+|+++.+ +.+... . ..+.
T Consensus 157 ~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T TIGR01479 157 RGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLDFIRLD 236 (468)
T ss_pred eCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcccceeC
Confidence 873 2268999999997311 3579999999995533 222210 0 0111
Q ss_pred cchHH---------hHH-hcCceEEEEecceEEEcCCHHHHHHHH
Q 018060 196 KEVFP---------KIA-LEGKLFAMVLPGFWMDIGQPRDYITGL 230 (361)
Q Consensus 196 ~d~l~---------~l~-~~~~i~~~~~~~~~~~i~t~~dy~~a~ 230 (361)
.+.++ .++ +...+.+.+.+..|.|+++++++.+..
T Consensus 237 ~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 237 KEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 23344 222 334577888888999999999988874
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.90 E-value=4.3e-22 Score=173.52 Aligned_cols=211 Identities=22% Similarity=0.303 Sum_probs=151.4
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
.|||||+|.++||+ +|+|+|++|+|||+|+++.+.++ ++++++|+++. +.+.+++.++ ++++.+..+
T Consensus 4 ~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~~----~~~v~~~~~ 71 (238)
T PRK13368 4 VVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEAF----GGKVVMTSD 71 (238)
T ss_pred EEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHHc----CCeEEecCc
Confidence 48999999999994 49999999999999999999998 79999998864 5677777653 566655555
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCC-ceEEEEEEcc------CCCCceeEEEc
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGG-EASIMVTKVD------EPSKYGVVVME 151 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~-~~~i~~~~~~------~~~~~~~v~~~ 151 (361)
....|+. .+..+...+ . .|.+++++||+ +...++.++++.+.+.+. .+++++.+.+ ++..++. ..+
T Consensus 72 ~~~~g~~-~~~~a~~~~--~-~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 146 (238)
T PRK13368 72 DHLSGTD-RLAEVMLKI--E-ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVD 146 (238)
T ss_pred cCCCccH-HHHHHHHhC--C-CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EEC
Confidence 5445555 466666555 2 34899999997 556679999998876544 3444444432 2444443 445
Q ss_pred CCCCeEeeeeecCCC------CCCCeEEEEEEEeCHhhHhhccCCC-Cc---ccc-chHHhHHhc-CceEEEEecceEEE
Q 018060 152 ESTGKVEKFVEKPKL------FVGNKINAGIYLLNPAVLDRIELRP-TS---IEK-EVFPKIALE-GKLFAMVLPGFWMD 219 (361)
Q Consensus 152 ~~~~~v~~~~ek~~~------~~~~~~~~Giyi~~~~~l~~l~~~~-~~---~~~-d~l~~l~~~-~~i~~~~~~~~~~~ 219 (361)
++ |++..+.|+|.. ....+.++|+|+|+++++..+.... .. +.. +++ .++.. .++.++..+++|.|
T Consensus 147 ~~-g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~D 224 (238)
T PRK13368 147 KN-GDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIG 224 (238)
T ss_pred CC-CCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCC
Confidence 54 899999875421 1144789999999999998874321 11 222 555 45444 45889988899999
Q ss_pred cCCHHHHHHHHH
Q 018060 220 IGQPRDYITGLR 231 (361)
Q Consensus 220 i~t~~dy~~a~~ 231 (361)
+++|+||.+++.
T Consensus 225 I~t~~Dl~~a~~ 236 (238)
T PRK13368 225 VDTPEDLERVRA 236 (238)
T ss_pred CCCHHHHHHHHH
Confidence 999999999865
No 60
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=2.9e-19 Score=153.72 Aligned_cols=228 Identities=25% Similarity=0.366 Sum_probs=153.7
Q ss_pred CeEEEEecCCCcccCCCC-CCCCCcccee-CCcchHHHHHHHHHH-cCCCEEEEEcccCh-HHHHHHHHHhhhccCcEEE
Q 018060 1 MKALILVGGFGTRLRPLT-LSVPKPLVEF-ANKPMILHQIEALKA-VGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKII 76 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt-~~~pK~llpl-~g~pli~~~l~~l~~-~gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~ 76 (361)
|.+||||+|.|+|||||+ +..||+++++ ++++|++.+++++.. .+.++++|++++++ ..+++.+.+.....-..
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~-- 79 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAG-- 79 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccc--
Confidence 679999999999999995 6899999999 569999999999988 46899999999854 44566665532211112
Q ss_pred EecCCCCCCCchHHHHHHhhccCCCCC-cEEEEeCCeeeccC--HHHHHHHHH---HcCCceEEEEEEccCCCCceeEEE
Q 018060 77 CSQETEPLGTAGPLALARDKLIDDTGE-PFFVLNSDVISEYP--FAEMIEFHK---AHGGEASIMVTKVDEPSKYGVVVM 150 (361)
Q Consensus 77 ~~~~~~~~g~~~al~~~~~~~~~~~~~-~~lv~~~D~~~~~~--l~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~v~~ 150 (361)
++-++....|+-++..+.-.+.+...| -++++++|++.... +.+.++... +.+.-.|.-..+....++|||+..
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~ 159 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIET 159 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeec
Confidence 344556678888888887665433322 58999999966543 666665432 223333333344455568999998
Q ss_pred cCC-----CCeEeeeeecCCC-------CCC-CeEEEEEEEeCHhhH-hhccC-CCC----------cc---c-----cc
Q 018060 151 EES-----TGKVEKFVEKPKL-------FVG-NKINAGIYLLNPAVL-DRIEL-RPT----------SI---E-----KE 197 (361)
Q Consensus 151 ~~~-----~~~v~~~~ek~~~-------~~~-~~~~~Giyi~~~~~l-~~l~~-~~~----------~~---~-----~d 197 (361)
.+. .-+|.+|.|||.. ..+ .++|+|+|+|+...+ +.+.. .+. .. . .+
T Consensus 160 G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e 239 (333)
T COG0836 160 GESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNE 239 (333)
T ss_pred CcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHH
Confidence 652 2479999999982 123 579999999998844 44421 110 00 0 01
Q ss_pred h----------HHhHHhcCceEEEEecceEEEcCCHHHHHHHH
Q 018060 198 V----------FPKIALEGKLFAMVLPGFWMDIGQPRDYITGL 230 (361)
Q Consensus 198 ~----------l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~ 230 (361)
. +.-|-+...+.+.+.+-.|-|++++....+..
T Consensus 240 ~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 240 AYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred HHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 1 11133455677788888899999987666654
No 61
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=4.3e-19 Score=140.25 Aligned_cols=213 Identities=21% Similarity=0.310 Sum_probs=146.4
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.|||||||.|+||.|+|.+.||+|+.+.|+|||+++++.|.++|+++|++|+++-.+++. ||.+ +.++.+++.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-YLkd---Ky~vtLvyN~k 76 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFE-YLKD---KYDVTLVYNPK 76 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHHH-HHHH---hcCeEEEeCch
Confidence 8999999999999999999999999999999999999999999999999999999765444 5543 33788999988
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEeee
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF 160 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (361)
........+++.+++.+. +.-++.+|...... +...+.. .+-...+.+......|..+ .+.+ ++|+++
T Consensus 77 Y~~yNn~ySlyla~d~l~-----ntYiidsDnyl~kN---if~~~~~--~S~Yfav~~~~~tnEw~l~-~~~~-~ki~~v 144 (231)
T COG4750 77 YREYNNIYSLYLARDFLN-----NTYIIDSDNYLTKN---IFLTKES--HSKYFAVYRSGKTNEWLLI-YNSD-GKITRV 144 (231)
T ss_pred HHhhhhHHHHHHHHHHhc-----ccEEeccchHhhhh---hhhcCcc--cceEEEEEecCCCceeEEE-EcCC-CcEEEE
Confidence 888889999999999994 35688889855422 2222111 1123333333344455443 3554 888887
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHhhcc----------CCCCccccchHHhHHhcCceEEEEe-cceEEEcCCHHHHHHH
Q 018060 161 VEKPKLFVGNKINAGIYLLNPAVLDRIE----------LRPTSIEKEVFPKIALEGKLFAMVL-PGFWMDIGQPRDYITG 229 (361)
Q Consensus 161 ~ek~~~~~~~~~~~Giyi~~~~~l~~l~----------~~~~~~~~d~l~~l~~~~~i~~~~~-~~~~~~i~t~~dy~~a 229 (361)
.-. ....+..+|+-.|+...-+.+. ++...+..++.-.-+++-.++.-.. ++..+.+++.++|.+.
T Consensus 145 ~Ig---g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~ 221 (231)
T COG4750 145 DIG---GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKF 221 (231)
T ss_pred Eec---CcccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhh
Confidence 532 2445678899999987655431 1122233333333333322322222 3467788999988877
Q ss_pred HHH
Q 018060 230 LRL 232 (361)
Q Consensus 230 ~~~ 232 (361)
...
T Consensus 222 ~~~ 224 (231)
T COG4750 222 EQK 224 (231)
T ss_pred hhh
Confidence 654
No 62
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.82 E-value=4.8e-19 Score=165.90 Aligned_cols=227 Identities=22% Similarity=0.306 Sum_probs=151.3
Q ss_pred CeEEEEecCCCcccCCCCCC-CCCccceeC-CcchHHHHHHHHHHcCCCEEEEEcccC-hHHHHHHHHHhhhccCcEEEE
Q 018060 1 MKALILVGGFGTRLRPLTLS-VPKPLVEFA-NKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIIC 77 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~-~pK~llpl~-g~pli~~~l~~l~~~gi~~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~ 77 (361)
|.+||||||.|+||+|++.. .||+|+|+. ++|||+++++++.+.++.+.+++++.. ...+++.+.++.. ..-.+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~~~i 82 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LTENI 82 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---ccccE
Confidence 67999999999999999987 799999995 579999999999988877777888874 3455666654321 01133
Q ss_pred ecCCCCCCCchHHHHHHhhccCCC---CCcEEEEeCCeeeccC--HHHHHHHHH---HcCCceEEEEEEccCCCCceeEE
Q 018060 78 SQETEPLGTAGPLALARDKLIDDT---GEPFFVLNSDVISEYP--FAEMIEFHK---AHGGEASIMVTKVDEPSKYGVVV 149 (361)
Q Consensus 78 ~~~~~~~g~~~al~~~~~~~~~~~---~~~~lv~~~D~~~~~~--l~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~v~ 149 (361)
+.++...+|+.++..+...+.... ++-++++++|++.... |.+.++... +.+.-+|+-..+....+.|||+.
T Consensus 83 i~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~ 162 (478)
T PRK15460 83 ILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIR 162 (478)
T ss_pred EecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEE
Confidence 455666788888777766554321 2368899999965543 555554432 22333444444555667899999
Q ss_pred EcCCC--------CeEeeeeecCCC-------CCC-CeEEEEEEEeCHhhH-hhccC-CC---------------C-c--
Q 018060 150 MEEST--------GKVEKFVEKPKL-------FVG-NKINAGIYLLNPAVL-DRIEL-RP---------------T-S-- 193 (361)
Q Consensus 150 ~~~~~--------~~v~~~~ek~~~-------~~~-~~~~~Giyi~~~~~l-~~l~~-~~---------------~-~-- 193 (361)
.++.. .+|.+|.|||.. ..+ .++|+|+|+|+.+.+ +.|+. .+ . .
T Consensus 163 ~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~ 242 (478)
T PRK15460 163 RGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFI 242 (478)
T ss_pred eCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcccce
Confidence 77431 379999999983 123 478999999998844 33321 11 0 0
Q ss_pred -cccchHHh----------HHhcCceEEEEecceEEEcCCHHHHHHHH
Q 018060 194 -IEKEVFPK----------IALEGKLFAMVLPGFWMDIGQPRDYITGL 230 (361)
Q Consensus 194 -~~~d~l~~----------l~~~~~i~~~~~~~~~~~i~t~~dy~~a~ 230 (361)
+..+.++. |-+..++.+.+.+..|.|+++..++.+..
T Consensus 243 ~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 243 RVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred eeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 00111221 22344577777788899999988766653
No 63
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.82 E-value=8.6e-20 Score=156.05 Aligned_cols=140 Identities=23% Similarity=0.304 Sum_probs=120.0
Q ss_pred cchHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHHHHhhhh---------------cccccccCCcEEecceEEcCC
Q 018060 196 KEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK---------------KSSLKLATGANIVGNVLVHES 260 (361)
Q Consensus 196 ~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l~~~~~---------------~~~~~~~~~~~i~~~~~i~~~ 260 (361)
.|.++.|++.+ ++.++|+|.|+ ++|+++++..+..... .....+++++.+.++++|+++
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~ 104 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDN 104 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCC
Confidence 35677776665 78889999999 9999999999976431 123457788888889999999
Q ss_pred CEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec---------cEEcCCCEECCCcEEcCceEECCC
Q 018060 261 AQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTVGQWARVENMTILGED 330 (361)
Q Consensus 261 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~ig~~~~i~~~~~ig~~ 330 (361)
+.|++++.|+++++||++|.|+.++.|. +++|+++|.|+.+++|.+ ++|++++.||.++.|.+++.||++
T Consensus 105 ~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~ 184 (231)
T TIGR03532 105 AVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKG 184 (231)
T ss_pred CEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCC
Confidence 9999999998999999999999999996 899999999999999974 789999999999999888999999
Q ss_pred eEECCceEEcC
Q 018060 331 VHVCDEIYSNG 341 (361)
Q Consensus 331 ~~v~~~~~i~~ 341 (361)
++|++++++.+
T Consensus 185 ~~IgagsvV~~ 195 (231)
T TIGR03532 185 AVVAAGAIVTE 195 (231)
T ss_pred CEECCCCEEcc
Confidence 99999998854
No 64
>PLN02917 CMP-KDO synthetase
Probab=99.80 E-value=1.1e-17 Score=148.66 Aligned_cols=216 Identities=19% Similarity=0.186 Sum_probs=145.1
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET 81 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 81 (361)
.+||||+|.++||. +|+|+|++|+|||+|+++.+.+++..+.+++ ..+.+++.+++.++ ++++....+.
T Consensus 49 ~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~~----~v~vi~~~~~ 117 (293)
T PLN02917 49 VGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVV-ATDDERIAECCRGF----GADVIMTSES 117 (293)
T ss_pred EEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHHc----CCEEEeCCcc
Confidence 48999999999994 4999999999999999999998764333333 34456777777543 4555554445
Q ss_pred CCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEE----EccCCCCceeEE--EcCC
Q 018060 82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVT----KVDEPSKYGVVV--MEES 153 (361)
Q Consensus 82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~v~--~~~~ 153 (361)
...|+... ..+.+.+.. +.|.+++++||+ +....++.+++.+.+. .+.+++.. ..+++..||.+. .+++
T Consensus 118 ~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~ 194 (293)
T PLN02917 118 CRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVDNQ 194 (293)
T ss_pred cCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEECCC
Confidence 55566555 567777742 234899999999 4445689999987654 33333332 346778899875 5665
Q ss_pred CCeEeeeeec--CC-------CCCCCeEEEEEEEeCHhhHhhccCC-CCccc-----cchHHhHHhcC-ceEEEEecceE
Q 018060 154 TGKVEKFVEK--PK-------LFVGNKINAGIYLLNPAVLDRIELR-PTSIE-----KEVFPKIALEG-KLFAMVLPGFW 217 (361)
Q Consensus 154 ~~~v~~~~ek--~~-------~~~~~~~~~Giyi~~~~~l~~l~~~-~~~~~-----~d~l~~l~~~~-~i~~~~~~~~~ 217 (361)
|++..|..+ |. .....+.++|+|+|+.+.|..|..- ....+ .|+. . +.++ ++..+..+...
T Consensus 195 -g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~-~-le~G~~i~~~~~~~~~ 271 (293)
T PLN02917 195 -GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLK-V-LENGYKMKVIKVDHEA 271 (293)
T ss_pred -CeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHH-H-HhCCCceEEEEeCCCC
Confidence 776655432 11 1223478999999999988866421 11122 2332 3 3444 57777666566
Q ss_pred EEcCCHHHHHHHHHHHH
Q 018060 218 MDIGQPRDYITGLRLYL 234 (361)
Q Consensus 218 ~~i~t~~dy~~a~~~~l 234 (361)
..++|++|+.++.+.+.
T Consensus 272 ~GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 272 HGVDTPEDVEKIEALMR 288 (293)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999988653
No 65
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.77 E-value=2.5e-17 Score=136.40 Aligned_cols=179 Identities=21% Similarity=0.308 Sum_probs=125.1
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.|||||||+|+||++ .||+|+|++|+|||+|+++.+.++++++++++++++.+.++.++.+. ...+ . .
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~~--~-~ 69 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKDY--K-N 69 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcEE--E-e
Confidence 8999999999999976 79999999999999999999999899999999998888888888652 1122 1 2
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
....|...++..+.+.+. ..+++++++||+ +....++.+++.+...+..+..++.+.+.....+. +.
T Consensus 70 ~~g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~------ 138 (183)
T TIGR00454 70 ASGKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIPKEKYPNPSI---DF------ 138 (183)
T ss_pred cCCCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEecccccCCCcc---cc------
Confidence 445577788888877652 234899999999 44566899999887766555554444322211111 11
Q ss_pred eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHHH
Q 018060 159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGL 230 (361)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~ 230 (361)
..++.+|+-++.+..-.+ .++.. +..+.-.+.++|++|+..+.
T Consensus 139 ----------~~~~p~g~n~~~~~~~~~------------------~~~~~-~~~~~~~~nvnt~~d~~~~~ 181 (183)
T TIGR00454 139 ----------NGLVPAGVNIVSSKNGYQ------------------EEEII-MVIDELIVNINTKDDLKLAE 181 (183)
T ss_pred ----------ccEeeeEEEEecCCCccc------------------ceeee-eccccceEecCCHHHHHHhh
Confidence 115789999988752211 01110 12233577889999986653
No 66
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.75 E-value=1.9e-16 Score=137.22 Aligned_cols=210 Identities=20% Similarity=0.241 Sum_probs=140.2
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 82 (361)
+||+|+|.|+||. +|+|++++|+|||+|+++.+.++++++|+|+++. +.+.+.++++ ++++.......
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~~----g~~~v~~~~~~ 69 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQKF----GIEVCMTSKHH 69 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHHc----CCEEEEeCCCC
Confidence 7999999999993 6999999999999999999998889999998864 4466666543 55554333333
Q ss_pred CCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCC-----CceeEEEcCCCC
Q 018060 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPS-----KYGVVVMEESTG 155 (361)
Q Consensus 83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~v~~~~~~~ 155 (361)
..| .+.+..+...+...+.+.++++.||. +....++++++.+.+....++.++.+..++. ....+..+.+ |
T Consensus 70 ~~G-t~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~-g 147 (238)
T TIGR00466 70 NSG-TERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQ-G 147 (238)
T ss_pred CCh-hHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCC-C
Confidence 333 34444454444212334789999999 3344589999987655556677777764422 1233444554 7
Q ss_pred eEeeeeecCC----C-------CC--CCeEEEEEEEeCHhhHhhccCC-CCccc----cchHHhHHhcCceEEEEecce-
Q 018060 156 KVEKFVEKPK----L-------FV--GNKINAGIYLLNPAVLDRIELR-PTSIE----KEVFPKIALEGKLFAMVLPGF- 216 (361)
Q Consensus 156 ~v~~~~ek~~----~-------~~--~~~~~~Giyi~~~~~l~~l~~~-~~~~~----~d~l~~l~~~~~i~~~~~~~~- 216 (361)
....|...+- . +. ..+...|+|.|++++|+.+..- +..++ .|.++.|-...++.+...+..
T Consensus 148 ~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~ 227 (238)
T TIGR00466 148 YALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVP 227 (238)
T ss_pred eEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCC
Confidence 7766655421 1 11 1356899999999999887532 22222 255677766667888777655
Q ss_pred EEEcCCHHHH
Q 018060 217 WMDIGQPRDY 226 (361)
Q Consensus 217 ~~~i~t~~dy 226 (361)
-..+|||+|+
T Consensus 228 ~~~vdt~~d~ 237 (238)
T TIGR00466 228 SVGVDTQEDL 237 (238)
T ss_pred CCCCCChHHc
Confidence 4589999986
No 67
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.73 E-value=3.3e-16 Score=123.38 Aligned_cols=166 Identities=27% Similarity=0.437 Sum_probs=121.5
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.+||||+|+|+||+- .-|||++++|||||.|+++.+.+ .+++++++++++...++.|+.++ ++++. .
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~----gv~vi--~- 68 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV----GVKVI--E- 68 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc----CceEE--E-
Confidence 7899999999999983 38999999999999999999998 68999999999999999999875 45553 2
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eecc-CHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~-~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
....|....+..+.+.+ .. ++|++++|+ +.+. .++.+++.+..-..+...+ ... |+
T Consensus 69 tpG~GYv~Dl~~al~~l--~~--P~lvvsaDLp~l~~~~i~~vi~~~~~~~~p~~~~---------------~~~-G~-- 126 (177)
T COG2266 69 TPGEGYVEDLRFALESL--GT--PILVVSADLPFLNPSIIDSVIDAAASVEVPIVTV---------------VKA-GR-- 126 (177)
T ss_pred cCCCChHHHHHHHHHhc--CC--ceEEEecccccCCHHHHHHHHHHHhhccCceeEe---------------ecc-Cc--
Confidence 23347889999999998 33 899999999 3333 4788887765111111111 111 11
Q ss_pred eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecceEEEcCCHHHHHHHHHHHH
Q 018060 159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL 234 (361)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~~~~~i~t~~dy~~a~~~~l 234 (361)
+.+|+-++.. . +.++.+....++-.++++|++||.++++...
T Consensus 127 -------------v~~Glni~~~-----~----------------~~~~~~~i~~~~la~NVNT~eDl~~a~~ll~ 168 (177)
T COG2266 127 -------------VPVGLNIVGG-----K----------------QEEEILEIDNPELAVNVNTPEDLKKAERLLR 168 (177)
T ss_pred -------------cceeeEeecC-----C----------------CcceeEEeeccceeEecCCHHHHHHHHHHHh
Confidence 3567777765 1 0233444445567889999999999987653
No 68
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.69 E-value=4.4e-16 Score=127.09 Aligned_cols=119 Identities=29% Similarity=0.485 Sum_probs=94.8
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 82 (361)
|||||||+|+||+. ||+|+|++|+|||+|+++.+.+.++++|+|++++ +++..++..+ +++++.....
T Consensus 1 ~vILa~G~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~----~~~~v~~~~~- 68 (160)
T PF12804_consen 1 AVILAAGKSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY----GIKVVVDPEP- 68 (160)
T ss_dssp EEEEESSSCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT----TSEEEE-STS-
T ss_pred CEEECCcCcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc----CceEEEeccc-
Confidence 79999999999965 9999999999999999999999999999999998 4455555432 5666555433
Q ss_pred CCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCceEEE
Q 018060 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIM 135 (361)
Q Consensus 83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~~i~ 135 (361)
..|++.+++.+...+. ..++|++++||+ + ....++++++.+.+++.++++.
T Consensus 69 ~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~ 121 (160)
T PF12804_consen 69 GQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVP 121 (160)
T ss_dssp SCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred cCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEE
Confidence 4799999999999874 334999999999 3 3445899999988776655544
No 69
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.67 E-value=1.5e-15 Score=122.91 Aligned_cols=109 Identities=20% Similarity=0.306 Sum_probs=96.0
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECC---CcEECCCCEECCCcEE-----eceEEccCcEECCCCEEeccEEcCCC
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWHS 313 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~ 313 (361)
...+++++.+.+++.|++++.|+++|+|.+ ++.||++|.|+++|.| .+++|++++.|++++++.+++||+++
T Consensus 6 ~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~ 85 (155)
T cd04745 6 SSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA 85 (155)
T ss_pred CeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence 445678888889999999999999999875 4899999999999999 57999999999999999999999999
Q ss_pred EECCCcEEcCceEECCCeEECCceEEcCcE-EccCcee
Q 018060 314 TVGQWARVENMTILGEDVHVCDEIYSNGGV-VLPHKEI 350 (361)
Q Consensus 314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~-i~~~~~v 350 (361)
.||.++.|.++++||+++.|++++.+.... +.+++.+
T Consensus 86 ~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v 123 (155)
T cd04745 86 LVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLI 123 (155)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEE
Confidence 999999999999999999999999987544 4444444
No 70
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.67 E-value=6.2e-15 Score=127.13 Aligned_cols=204 Identities=19% Similarity=0.211 Sum_probs=134.3
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEec-
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ- 79 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~- 79 (361)
.+||||+|.|+||. +|+|++++|+|||+|+++.+.+++ +++|+|++. .+.+.+++.++ +..+.+..
T Consensus 3 ~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~----~~~~~~~~~ 70 (223)
T cd02513 3 LAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY----GAEVPFLRP 70 (223)
T ss_pred EEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh----CCCceeeCC
Confidence 58999999999994 499999999999999999999987 788887664 34555555443 33222221
Q ss_pred ---CCCCCCCchHHHHHHhhccCC--CCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcC
Q 018060 80 ---ETEPLGTAGPLALARDKLIDD--TGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEE 152 (361)
Q Consensus 80 ---~~~~~g~~~al~~~~~~~~~~--~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~ 152 (361)
.....|+.+++..+.+.+... ..+.++++.||+ +...+++++++.+.+.+.++++.+.+..+...++... ++
T Consensus 71 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 149 (223)
T cd02513 71 AELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGL-DD 149 (223)
T ss_pred hHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheee-cc
Confidence 123347788888888776421 124899999999 4455699999998877667776666654443333332 22
Q ss_pred CCCeEeeeeecC--C---CCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecc-eEEEcCCHHHH
Q 018060 153 STGKVEKFVEKP--K---LFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDY 226 (361)
Q Consensus 153 ~~~~v~~~~ek~--~---~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~-~~~~i~t~~dy 226 (361)
+...+..+.+.. . .+.....++|+|+++++.+...... + .+++..+.++. ...+|++++||
T Consensus 150 ~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~~--------~-----g~~~~~~~~~~~~~~dI~~~~D~ 216 (223)
T cd02513 150 NGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNSF--------F-----GGKTGPYEMPRERSIDIDTEEDF 216 (223)
T ss_pred CCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCCc--------c-----CCCeEEEEeCccceeCCCCHHHH
Confidence 101222221211 1 1223356889999999977552111 1 45666666655 57899999999
Q ss_pred HHHHH
Q 018060 227 ITGLR 231 (361)
Q Consensus 227 ~~a~~ 231 (361)
..+..
T Consensus 217 ~~ae~ 221 (223)
T cd02513 217 ELAEA 221 (223)
T ss_pred HHHHH
Confidence 87754
No 71
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.67 E-value=1.9e-15 Score=123.43 Aligned_cols=111 Identities=23% Similarity=0.399 Sum_probs=92.6
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEE
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 321 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i 321 (361)
...+.+++.+.++++|+++++|++++.|+++++||++|.|+++++|.+++|++++.|++++++.+++|++++.|++++.+
T Consensus 23 ~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i 102 (163)
T cd05636 23 GAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTIT 102 (163)
T ss_pred CCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEE
Confidence 34456777777888888888888888888889999999999999999999999999999999999999999999999988
Q ss_pred cC------------------------ceEECCCeEECCceEEc-CcEEccCceeec
Q 018060 322 EN------------------------MTILGEDVHVCDEIYSN-GGVVLPHKEIKS 352 (361)
Q Consensus 322 ~~------------------------~~~ig~~~~v~~~~~i~-~~~i~~~~~v~~ 352 (361)
.+ +++||+++.+|.++.+. +..+++++.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~a 158 (163)
T cd05636 103 ANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYP 158 (163)
T ss_pred cccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECC
Confidence 43 58888888888888875 666677766644
No 72
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.67 E-value=1e-15 Score=121.63 Aligned_cols=116 Identities=19% Similarity=0.276 Sum_probs=104.4
Q ss_pred ccccccCCcEEecceEEcCCCEECCCcEECC---CcEECCCCEECCCcEEe-----ceEEccCcEECCCCEEeccEEcCC
Q 018060 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWH 312 (361)
Q Consensus 241 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~ 312 (361)
...++++++.+-+++.|++++.|.++++|++ ...||+++-|.++|.|. .+.||++|+||+++.|++|+|+++
T Consensus 16 ~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~ 95 (176)
T COG0663 16 PTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN 95 (176)
T ss_pred CceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC
Confidence 3467889999999999999999999999984 46899999999999996 479999999999999999999999
Q ss_pred CEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeecccCC
Q 018060 313 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILK 356 (361)
Q Consensus 313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~ 356 (361)
|.||-+++|.+|+.||++|.||+|+.+.++...|...+.-..|.
T Consensus 96 ~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pa 139 (176)
T COG0663 96 VLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPA 139 (176)
T ss_pred cEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcc
Confidence 99999999999999999999999999998888888777654443
No 73
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.67 E-value=1.3e-15 Score=126.53 Aligned_cols=109 Identities=17% Similarity=0.299 Sum_probs=95.0
Q ss_pred ccccccCCcEEecceEEcCCCEECCCcEECC---CcEECCCCEECCCcEE-----eceEEccCcEECCCCEEeccEEcCC
Q 018060 241 SSLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWH 312 (361)
Q Consensus 241 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~ 312 (361)
....+++++.+.++++|++++.|+++|+|.+ .++||++|.|+++|.| .+++|++++.|+++++|++|+|+++
T Consensus 13 ~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~ 92 (192)
T TIGR02287 13 PEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN 92 (192)
T ss_pred CCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC
Confidence 3456778888888999999999999999864 5789999999999999 4799999999999999999999999
Q ss_pred CEECCCcEEcCceEECCCeEECCceEEcCcEEccCce
Q 018060 313 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE 349 (361)
Q Consensus 313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~ 349 (361)
+.||.++.+.++++||+++.|++++.+......|...
T Consensus 93 ~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~ 129 (192)
T TIGR02287 93 ALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQY 129 (192)
T ss_pred CEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCe
Confidence 9999999999999999999999999987655444333
No 74
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.66 E-value=2e-15 Score=129.69 Aligned_cols=208 Identities=17% Similarity=0.203 Sum_probs=133.7
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
.+||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++ +++++|+++++.......+..+.. ...+.+...
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~--~~~~~~~~~ 76 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL--SKVVKIVEG 76 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhccc--CCCeEEECC
Confidence 589999999999976 47999999999999999999999876 899999998865444433322111 112222222
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
+.+...+++.+.+.+...+.+.++++.||+ +....++++++.+.+.+ ..+...+..+ +....+++ |.+.
T Consensus 77 --~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~----~~~~~~~~-g~~~ 147 (218)
T cd02516 77 --GATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVTD----TIKRVDDD-GVVV 147 (218)
T ss_pred --chHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEeccc----cEEEecCC-Ccee
Confidence 224578899998887312344899999999 33445899999886543 2233333322 23334554 7888
Q ss_pred eeeecCCCCCCCeEEEEEEEeCHhhHhhccCC---CCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHH
Q 018060 159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYI 227 (361)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~---~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~ 227 (361)
++.+. ..-....++ ++|+.+.+..+... ...+..|....+.+.+ ++.....+...++++||+||.
T Consensus 148 ~~~~r---~~~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~ 216 (218)
T cd02516 148 ETLDR---EKLWAAQTP-QAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLA 216 (218)
T ss_pred ecCCh---HHhhhhcCC-CcccHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHh
Confidence 87763 222334556 89999888765311 1112233333343333 465655555667999999984
No 75
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.66 E-value=2.5e-15 Score=125.75 Aligned_cols=119 Identities=20% Similarity=0.382 Sum_probs=90.9
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.+||||||.|+||++ ||+|+|++|+|||+|+++.+.+.++++++|+++.......+++.. .++.+... .
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~ 70 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG----LPVVVVIN-P 70 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC----CCeEEEeC-C
Confidence 5689999999999987 999999999999999999999988999999998865555544433 23433222 2
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCC
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGG 130 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~ 130 (361)
....|+..+++.+.+.+.. ..+.+++++||+ +....++.+++.+...+.
T Consensus 71 ~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 71 DWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred ChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 3345889999999988742 334899999999 334458888887765443
No 76
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.66 E-value=3.9e-15 Score=127.79 Aligned_cols=207 Identities=17% Similarity=0.196 Sum_probs=134.4
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEec
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
.+||||||.|+||+. ..||+|++++|+|||+|+++.+.++ ++++++|+++.+. +.+.+.+.. . ..+.+..
T Consensus 1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~~~ 72 (217)
T TIGR00453 1 SAVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKIVA 72 (217)
T ss_pred CEEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEEeC
Confidence 379999999999975 5799999999999999999999998 7999999998753 444444432 1 1122222
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV 157 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (361)
. ..+..++++.+...+. +.+.++++.||+ +....++.+++.+.+. .++++..+..+ ++...+++ |.+
T Consensus 73 ~--~~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~~----~v~~~~~~-g~~ 141 (217)
T TIGR00453 73 G--GDTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVAD----TLKRVEAD-GFI 141 (217)
T ss_pred C--CchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEeccc----eEEEEcCC-Cce
Confidence 2 1234578888887762 334899999999 4445589999887664 23344444322 34444543 667
Q ss_pred eeeeecCCCCCCCeEEEEEEEeCHhhHhhccC---CCCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHH
Q 018060 158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL---RPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLR 231 (361)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~---~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~ 231 (361)
..+.++.. -.... +.|.|+...+..+.. +......|....+...+ .+..+..+....++++|+|+..+..
T Consensus 142 ~~~~~r~~---~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 142 VETVDREG---LWAAQ-TPQAFRTELLKKALARAKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred eecCChHH---eEEEe-CCCcccHHHHHHHHHHHHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 77766321 12223 369999998765531 11111133344443333 4666666666779999999977754
No 77
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.66 E-value=7.2e-15 Score=134.59 Aligned_cols=202 Identities=14% Similarity=0.135 Sum_probs=135.8
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
.+||||||.|+||.. ..||+|++++|+|||+|+++.+.+.+ +++++|++++......+.+.. ... .+.+..
T Consensus 7 ~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~-~v~~v~- 78 (378)
T PRK09382 7 SLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIK-FVTLVT- 78 (378)
T ss_pred eEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCC-eEEEeC-
Confidence 599999999999954 68999999999999999999999987 799999998754433332211 111 122222
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
...+..++++.+++.+. . +.+++..+|. +. ...++.+++.+.+. .+++...+..++..|+...++. ..+.
T Consensus 79 -gG~~r~~SV~~gL~~l~--~-d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~Dtik~~~~tldR--~~l~ 150 (378)
T PRK09382 79 -GGATRQESVRNALEALD--S-EYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVADTLKRANETVDR--EGLK 150 (378)
T ss_pred -CCchHHHHHHHHHHhcC--C-CeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEeccCcEEeeeEcCc--ccEE
Confidence 22345788999988873 2 4899999998 33 34478888876543 4677777777777776545554 3443
Q ss_pred eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060 159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLY 233 (361)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~~ 233 (361)
.+ ++|+.+.... +++... ....+ .|..+.+...+ ++..++-+..|..+++|+|+..++..+
T Consensus 151 ~~-QTPQ~f~~~~-----------l~~a~~-~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l 212 (378)
T PRK09382 151 LI-QTPQLSRTKT-----------LKAAAD-GRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLL 212 (378)
T ss_pred EE-ECCCCCCHHH-----------HHHHHh-CCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHh
Confidence 33 7777553322 111111 11122 34455555444 577777788999999999999998654
No 78
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.65 E-value=4.4e-15 Score=124.52 Aligned_cols=119 Identities=17% Similarity=0.298 Sum_probs=88.0
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 82 (361)
+||||||.|+||++ ||+|+|++|+|||+|+++.+.+.++++++|++++..+.+.+.+. ...++.+.... ..
T Consensus 2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~---~~~~v~~v~~~-~~ 72 (188)
T TIGR03310 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLA---NHSNITLVHNP-QY 72 (188)
T ss_pred eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc---cCCCeEEEECc-Ch
Confidence 79999999999975 99999999999999999999998999999999987554443332 22345444332 22
Q ss_pred CCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHHcCCce
Q 018060 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEA 132 (361)
Q Consensus 83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~~~~~~ 132 (361)
..|...+++.+.... .+.+.+++++||+ + ....++.+++.+...+..+
T Consensus 73 ~~g~~~si~~~l~~~--~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 73 AEGQSSSIKLGLELP--VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred hcCHHHHHHHHhcCC--CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 357888888888722 2234899999999 3 3445888888776654433
No 79
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.65 E-value=1.2e-14 Score=125.57 Aligned_cols=212 Identities=16% Similarity=0.175 Sum_probs=133.8
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEe
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICS 78 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~ 78 (361)
|.+||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ +++++|+++.+. +.+.+.+.. .. ..+.+.
T Consensus 4 ~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~~~~~ 76 (227)
T PRK00155 4 VYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PKVTVV 76 (227)
T ss_pred eEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-CceEEe
Confidence 3599999999999964 56999999999999999999999875 899999998754 333333221 10 122222
Q ss_pred cCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCe
Q 018060 79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGK 156 (361)
Q Consensus 79 ~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (361)
.. +.+..++++.+...+. +.+.++++.||+ +....++.+++.+.+.+ ..+.+.+..++ +...+++ |.
T Consensus 77 ~~--~~~~~~sv~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~~----~~~v~~~-g~ 145 (227)
T PRK00155 77 AG--GAERQDSVLNGLQALP--DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVKDT----IKRSDDG-GG 145 (227)
T ss_pred CC--cchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEecccc----EEEEcCC-Cc
Confidence 22 2246889998888773 234899999999 44456899999876653 33333343332 2222433 56
Q ss_pred EeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCC---CccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHHHHH
Q 018060 157 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP---TSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRL 232 (361)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~---~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a~~~ 232 (361)
+.++.+.. .-...-+.|.|+.+.+..+.... ..+..|....+...+ ++..+..+..+.+|+|++||..+...
T Consensus 146 ~~~~~~r~----~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~ 221 (227)
T PRK00155 146 IVDTPDRS----GLWAAQTPQGFRIELLREALARALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAI 221 (227)
T ss_pred eeecCChH----HheeeeCCccchHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHH
Confidence 66554321 11223347899988877553211 111223233333333 46566655668899999999888765
Q ss_pred HH
Q 018060 233 YL 234 (361)
Q Consensus 233 ~l 234 (361)
+.
T Consensus 222 ~~ 223 (227)
T PRK00155 222 LK 223 (227)
T ss_pred HH
Confidence 43
No 80
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.63 E-value=2e-14 Score=116.73 Aligned_cols=185 Identities=18% Similarity=0.288 Sum_probs=131.7
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEecC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
-+||||||+|+||+. +|.|+|+.|+|++.++++....++++++++++++.. +....... ..++.++.+++
T Consensus 7 ~~VvLAAGrssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~~~~v~npd 77 (199)
T COG2068 7 AAVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLGVTVVVNPD 77 (199)
T ss_pred EEEEEcccccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCCeEEEeCcc
Confidence 389999999999986 999999999999999999999999999999999862 22222222 22466666665
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
.. .|.+.|+..+.......+ +-+++..||+ +...++..+++.+.++ ..+..-.+ ...
T Consensus 78 ~~-~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~-~~~v~p~~-------------~g~----- 136 (199)
T COG2068 78 YA-QGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRAR-GAAVRPVY-------------GGA----- 136 (199)
T ss_pred hh-hhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhcccc-Cceeeeec-------------cCC-----
Confidence 54 499999999999886443 4899999999 5666799999887766 22111100 000
Q ss_pred eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEE--e-cceEEEcCCHHHHHHHHHHH
Q 018060 159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMV--L-PGFWMDIGQPRDYITGLRLY 233 (361)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~--~-~~~~~~i~t~~dy~~a~~~~ 233 (361)
. .+=.+|++..|..+..-..+ .=.+.++.+.....+. . .+...|+|||+||.++...+
T Consensus 137 ---------r-----G~Pv~~~~~~~~~l~~l~GD---~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~ 197 (199)
T COG2068 137 ---------R-----GHPVLLSKDLFPALARLSGD---VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLL 197 (199)
T ss_pred ---------c-----CCceeechhHHHHHhhcCCc---hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhh
Confidence 0 11256777777766544333 1256666666544443 3 57899999999999998754
No 81
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.63 E-value=9.2e-15 Score=115.99 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=93.1
Q ss_pred cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe---------ccEEcCCC
Q 018060 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGWHS 313 (361)
Q Consensus 244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~~~ 313 (361)
.+++++.+.++++|++++.|.+.+++..++.||++|.|+.++.|. ++.|+++|.|++++.+. +++|++++
T Consensus 3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~ 82 (139)
T cd03350 3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDV 82 (139)
T ss_pred ccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCC
Confidence 356777888888888888888888888888888888888888886 68888888888888886 36888999
Q ss_pred EECCCcEEcCceEECCCeEECCceEEcC-cEE---ccCceeecccCCC-cc
Q 018060 314 TVGQWARVENMTILGEDVHVCDEIYSNG-GVV---LPHKEIKSSILKP-EI 359 (361)
Q Consensus 314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i---~~~~~v~~~~~~~-~~ 359 (361)
.|++++.|.+++.||+++.|++++++.+ ..+ .++..+.+++|++ ++
T Consensus 83 ~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~~~~~~v~~~~~~~~~~ 133 (139)
T cd03350 83 FIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPGSVV 133 (139)
T ss_pred EECCCCEECCCCEECCCCEEcCCCEEcCCeEecccCcccEEecccCCCCEE
Confidence 9999999988888888888888888752 222 6778888899988 44
No 82
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.63 E-value=3.1e-15 Score=128.00 Aligned_cols=118 Identities=11% Similarity=0.192 Sum_probs=85.3
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe---------ccEEcC
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGW 311 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~ 311 (361)
...+.+++.+.++++|++++.|.+. ++..++.||++|.|+.++.|+ ++.||++|.|+.++.|. +++|++
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgD 178 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 178 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECC
Confidence 3345566666666666666666654 454567778888888877777 57788888888887773 478999
Q ss_pred CCEECCCcEEcCceEECCCeEECCceEEc-CcEEccC---ceeecccCCCccc
Q 018060 312 HSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPH---KEIKSSILKPEIV 360 (361)
Q Consensus 312 ~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-~~~i~~~---~~v~~~~~~~~~~ 360 (361)
+|.||++|.|.++++||++++|++++++. +..|.+. ..+.+.+|+++++
T Consensus 179 nv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv 231 (269)
T TIGR00965 179 NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVV 231 (269)
T ss_pred CCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEE
Confidence 99999999999999999999999999985 3444433 3334566776654
No 83
>PLN02296 carbonate dehydratase
Probab=99.63 E-value=5.4e-15 Score=128.65 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=93.1
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEe-----------ceEEccCcEECCCCEEecc
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSS 307 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~ 307 (361)
...+.+++.+.+++.|++++.|+++|+|.+. +.||++|.|+++|.|. +++|+++|+|+++|+|.++
T Consensus 58 ~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~ 137 (269)
T PLN02296 58 DAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGC 137 (269)
T ss_pred CCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCC
Confidence 3456677777888899999999999988755 4899999999999995 5899999999999999999
Q ss_pred EEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCc
Q 018060 308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 348 (361)
Q Consensus 308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~ 348 (361)
+|+++|.||.++.|.++++||++++|++++++.....+|..
T Consensus 138 ~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~ 178 (269)
T PLN02296 138 TVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSG 178 (269)
T ss_pred EECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCC
Confidence 99999999999999999999999999999999765433333
No 84
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.63 E-value=6.9e-15 Score=119.71 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=89.9
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEEC---CCcEECCCCEECCCcEEec-----------eEEccCcEECCCCEEecc
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSR-----------CTVMRGVRIKKHACISSS 307 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~-----------~~i~~~~~i~~~~~i~~~ 307 (361)
...+++++.+.++++|++++.|++++.|. ++++||++|.|+++|.|.+ +.|++++.++.++++.++
T Consensus 5 ~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~ 84 (164)
T cd04646 5 GAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEAL 84 (164)
T ss_pred CcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEee
Confidence 45677888888999999999999999985 4589999999999999975 458889999999999999
Q ss_pred EEcCCCEECCCcEEcCceEECCCeEECCceEEcCc
Q 018060 308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 342 (361)
Q Consensus 308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~ 342 (361)
+||++|+||.++.|.++++||++++||+++++...
T Consensus 85 ~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 85 KIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 99999999999999999999999999999999754
No 85
>PLN02472 uncharacterized protein
Probab=99.62 E-value=7.4e-15 Score=126.11 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=94.4
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEe-----------ceEEccCcEECCCCEEecc
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSS 307 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~ 307 (361)
...+.+++.+.+++.|++++.|+++++|.++ .+||++|.|+++|.|. +++|+++|+||++|+|.++
T Consensus 65 ~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~ 144 (246)
T PLN02472 65 DAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSC 144 (246)
T ss_pred CCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCe
Confidence 3457788888889999999999999988754 7899999999999994 5899999999999999999
Q ss_pred EEcCCCEECCCcEEcCceEECCCeEECCceEEcCcE-EccCceee
Q 018060 308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV-VLPHKEIK 351 (361)
Q Consensus 308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~-i~~~~~v~ 351 (361)
+|++++.||.++.|.++++||+++.|++++.+..+. +.++..+.
T Consensus 145 ~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~ 189 (246)
T PLN02472 145 TIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWA 189 (246)
T ss_pred EEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEE
Confidence 999999999999999999999999999999987544 44444443
No 86
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.62 E-value=7e-15 Score=122.50 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=89.5
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEe-----ceEEccCcEECCCCEEeccEEcCCC
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS 313 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~ 313 (361)
...+++++.+.+++.||+++.|+++|+|.++ ++|+.+|.|+++|.|. +++|++++.||+++++.+++|++++
T Consensus 16 ~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v 95 (196)
T PRK13627 16 TAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDA 95 (196)
T ss_pred CeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCC
Confidence 4467778888888888888888888888643 5788888888888884 5899999999999999999999999
Q ss_pred EECCCcEEcCceEECCCeEECCceEEcCcEEc
Q 018060 314 TVGQWARVENMTILGEDVHVCDEIYSNGGVVL 345 (361)
Q Consensus 314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~ 345 (361)
.||.++.+.++++||+++.|++++++......
T Consensus 96 ~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~i 127 (196)
T PRK13627 96 LVGMNSVIMDGAVIGEESIVAAMSFVKAGFQG 127 (196)
T ss_pred EECcCCccCCCcEECCCCEEcCCCEEeCCcCc
Confidence 99999999999999999999999999765544
No 87
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.61 E-value=1.2e-14 Score=122.23 Aligned_cols=103 Identities=25% Similarity=0.402 Sum_probs=72.3
Q ss_pred cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCce
Q 018060 246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 325 (361)
Q Consensus 246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~ 325 (361)
++.+++.++++|+++++|+++++|++++.||++|.|++++.|.++.|++++.|++++.+.+++|++++.|++++.|.+++
T Consensus 7 ~~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~ 86 (193)
T cd03353 7 PETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGT 86 (193)
T ss_pred CCeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCcc
Confidence 45556667777777777777777777777777777777777777777777777777777777777777777777777667
Q ss_pred EECCCeEECCceEEcCcEEccCc
Q 018060 326 ILGEDVHVCDEIYSNGGVVLPHK 348 (361)
Q Consensus 326 ~ig~~~~v~~~~~i~~~~i~~~~ 348 (361)
+|++++.|++++.+.++.++++.
T Consensus 87 ~Ig~~~~Ig~~~~i~~s~ig~~~ 109 (193)
T cd03353 87 VLGEGVHIGNFVEIKKSTIGEGS 109 (193)
T ss_pred EECCCCEECCcEEEecceEcCCC
Confidence 77777776666666554444443
No 88
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.61 E-value=2e-14 Score=119.73 Aligned_cols=107 Identities=26% Similarity=0.389 Sum_probs=83.4
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.+||||||.|+||++ ||+|++++|+|||+|+++.+.+. +++++|+++.+... ... .++.+....
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~~----~~~~~v~~~- 65 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER----YAL----LGVPVIPDE- 65 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH----Hhh----cCCcEeeCC-
Confidence 6799999999999976 99999999999999999999988 89999999986543 111 134443322
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHH
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFH 125 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~ 125 (361)
....|...+++.+...+. .+.+++++||+ + ....++.+++.+
T Consensus 66 ~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 66 PPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 245688999999998873 34899999999 3 344578887766
No 89
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=1.8e-13 Score=111.96 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=160.0
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 82 (361)
+||+|.-.+|||.. |+|.-++|+|||.|+.++..++|.++++|.+.. +.+.+.+.++ |.++.......
T Consensus 6 viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~~----G~~avmT~~~h 73 (247)
T COG1212 6 VIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQAF----GGEAVMTSKDH 73 (247)
T ss_pred EEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHh----CCEEEecCCCC
Confidence 68888888899866 999999999999999999999999999998877 6688888775 67777666666
Q ss_pred CCCCchHHHHHHhhccCCCCCcEEEEeCCeee-c-cCHHHHHHHHHHcCCceEEEEEEccCC-----CCceeEEEcCCCC
Q 018060 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-E-YPFAEMIEFHKAHGGEASIMVTKVDEP-----SKYGVVVMEESTG 155 (361)
Q Consensus 83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~-~-~~l~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~v~~~~~~~ 155 (361)
+.|+ +.+..+...+.-.+.+-++=+.||..+ + ..+..+++.+++++.++..++.+..+. ++.-.+..|.+ |
T Consensus 74 ~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~-g 151 (247)
T COG1212 74 QSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKE-G 151 (247)
T ss_pred CCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCC-C
Confidence 6677 666666666633334467788999933 3 347888888888877777666665332 23335566776 8
Q ss_pred eEeeeeecCCCC-------CCCeEEEEEEEeCHhhHhhcc-CCCCcccc----chHHhHHhcCceEEEEecceE-EEcCC
Q 018060 156 KVEKFVEKPKLF-------VGNKINAGIYLLNPAVLDRIE-LRPTSIEK----EVFPKIALEGKLFAMVLPGFW-MDIGQ 222 (361)
Q Consensus 156 ~v~~~~ek~~~~-------~~~~~~~Giyi~~~~~l~~l~-~~~~~~~~----d~l~~l~~~~~i~~~~~~~~~-~~i~t 222 (361)
+.+.|...|-.. ..-+...|+|.|++++++++. ..+..++. +-|+.|-...++.+....... ..+||
T Consensus 152 ~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT 231 (247)
T COG1212 152 YALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDT 231 (247)
T ss_pred cEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCC
Confidence 999998765421 133568999999999998774 34444432 345556566678888777544 88999
Q ss_pred HHHHHHHHHHHH
Q 018060 223 PRDYITGLRLYL 234 (361)
Q Consensus 223 ~~dy~~a~~~~l 234 (361)
++|+-++.+.+.
T Consensus 232 ~EDLe~v~~~~~ 243 (247)
T COG1212 232 PEDLERVRKILS 243 (247)
T ss_pred HHHHHHHHHHHH
Confidence 999998876554
No 90
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.60 E-value=3e-13 Score=115.87 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=138.4
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEe-c-
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS-Q- 79 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~-~- 79 (361)
|||+|+|.++||. +|.+++++|+||+.|+++.+.+++ +++|+|.+.. +++.+..+++ |.++.+. +
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~~~----g~~v~~~r~~ 69 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAKSY----GASVPFLRPK 69 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHHHc----CCEeEEeChH
Confidence 7999999999993 599999999999999999999987 6777775543 4566555543 5555442 1
Q ss_pred --CCCCCCCchHHHHHHhhccC-CCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCC
Q 018060 80 --ETEPLGTAGPLALARDKLID-DTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEEST 154 (361)
Q Consensus 80 --~~~~~g~~~al~~~~~~~~~-~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~ 154 (361)
.....++.+++..+...+.. ...|.++++.+|. +...+++.+++.+.+.+++..+.+.+...+..+.. ..+++
T Consensus 70 ~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~-~~~~~- 147 (222)
T TIGR03584 70 ELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAF-KLKEN- 147 (222)
T ss_pred HHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHhe-EECCC-
Confidence 23456788999999887732 1234799999999 33456999999988766777777766544333332 33333
Q ss_pred CeEeeeeecC----CC--CCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEecc-eEEEcCCHHHHH
Q 018060 155 GKVEKFVEKP----KL--FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYI 227 (361)
Q Consensus 155 ~~v~~~~ek~----~~--~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~~-~~~~i~t~~dy~ 227 (361)
|+...+.... ++ ......+.++|+++++.+..-. . ++ .++...+.++. ...|||+++||.
T Consensus 148 g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~--~------~~-----~~~~~~~~m~~~~~iDID~~~D~~ 214 (222)
T TIGR03584 148 GGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESG--P------IF-----SPHSIPIVLPRHLVQDIDTLEDWE 214 (222)
T ss_pred CcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcC--C------cc-----CCCcEEEEeCccceeCCCCHHHHH
Confidence 5554443211 11 1122468999999999774411 0 11 45667777765 578999999998
Q ss_pred HHHHH
Q 018060 228 TGLRL 232 (361)
Q Consensus 228 ~a~~~ 232 (361)
.+...
T Consensus 215 ~ae~l 219 (222)
T TIGR03584 215 RAELL 219 (222)
T ss_pred HHHHH
Confidence 88653
No 91
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.59 E-value=1.8e-14 Score=102.87 Aligned_cols=79 Identities=46% Similarity=0.969 Sum_probs=73.9
Q ss_pred EcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECC
Q 018060 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 335 (361)
Q Consensus 257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~ 335 (361)
+++++.|++++.|+++++|+++|.|+++++|.++++++++.|++++.|.++++++++.|++++.+.+++++|+++++++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIKD 80 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEECC
Confidence 5788899999999999999999999999999999999999999999999999999999999999998889999888763
No 92
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.59 E-value=6.7e-14 Score=117.82 Aligned_cols=112 Identities=25% Similarity=0.314 Sum_probs=81.4
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.+||||||.|+||+. .||+|+|++|+|||+|+++.+. .++++++|+++.+.+.+ .++ ++.+.....
T Consensus 4 ~~~vILA~G~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~~----~~~~v~~~~ 70 (193)
T PRK00317 4 ITGVILAGGRSRRMGG----VDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARY----AAF----GLPVIPDSL 70 (193)
T ss_pred ceEEEEcCCCcccCCC----CCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHH----Hhc----CCcEEeCCC
Confidence 5799999999999953 5999999999999999999998 66999999988653322 111 334432222
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHc
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAH 128 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~ 128 (361)
....|...+++.+.... . .+.+++++||+ +.. ..++.+++.+.+.
T Consensus 71 ~~~~g~~~~i~~~l~~~--~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 71 ADFPGPLAGILAGLKQA--R-TEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred CCCCCCHHHHHHHHHhc--C-CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 22357788888888754 2 34899999999 434 4478888765433
No 93
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.59 E-value=3.5e-14 Score=114.42 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=95.6
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEec-----eEEccCcEECCCCEEeccEEcCCC
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHS 313 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~ 313 (361)
...+++++.+.+++.||+++.|++++.|.+. ++||++|.|+++|.|.. ++|++++.|++++++.+++|++++
T Consensus 6 ~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~ 85 (154)
T cd04650 6 KAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYV 85 (154)
T ss_pred CeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCC
Confidence 4567888889999999999999999998765 69999999999999974 899999999999999999999999
Q ss_pred EECCCcEEcCceEECCCeEECCceEEcCc-EEccCcee
Q 018060 314 TVGQWARVENMTILGEDVHVCDEIYSNGG-VVLPHKEI 350 (361)
Q Consensus 314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~~-~i~~~~~v 350 (361)
.|+.++.+.++++||+++++++++.+.+. .+.+...+
T Consensus 86 ~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~ 123 (154)
T cd04650 86 IVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLV 123 (154)
T ss_pred EEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEE
Confidence 99999999989999999999999988753 44444443
No 94
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.59 E-value=1.7e-14 Score=124.87 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=81.9
Q ss_pred cCCcEEecceEEcCCCEECCCcEEC-----CCcEECCCCEECCCcEEec-eEEccCcEECCCCEEec---------cEEc
Q 018060 246 ATGANIVGNVLVHESAQIGEGCLIG-----PDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISS---------SIIG 310 (361)
Q Consensus 246 ~~~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------~~i~ 310 (361)
.+++.+.+++++++++.|++++.|. .+++||++|.|+.++.|++ +.||++|.|+.++.|.+ ++|+
T Consensus 101 ~~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIg 180 (272)
T PRK11830 101 EAGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIE 180 (272)
T ss_pred cCCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEc
Confidence 3444455555555555555555443 4556666666666666663 57777777777776653 6899
Q ss_pred CCCEECCCcEEcCceEECCCeEECCceEEc-CcEEc---cCceeecccCCCccc
Q 018060 311 WHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVL---PHKEIKSSILKPEIV 360 (361)
Q Consensus 311 ~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-~~~i~---~~~~v~~~~~~~~~~ 360 (361)
++|.||.++.|..+++||++++|++++.+. +..|. ++.++.+.+|+++++
T Consensus 181 Dnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svv 234 (272)
T PRK11830 181 DNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVV 234 (272)
T ss_pred CCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEE
Confidence 999999999998889999999999999995 55555 356777788888775
No 95
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.58 E-value=3.7e-14 Score=115.86 Aligned_cols=96 Identities=23% Similarity=0.359 Sum_probs=89.2
Q ss_pred cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEc
Q 018060 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 322 (361)
Q Consensus 244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~ 322 (361)
.+.+++.+.++++|++++.|+++++|.++++||++|.|++++.|. +++|+++|.|+++++|.+++|++++.|++++.+.
T Consensus 7 ~~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~ 86 (163)
T cd05636 7 TVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVG 86 (163)
T ss_pred ccCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEe
Confidence 457788999999999999999999999999999999999999998 7999999999999999999999999999999887
Q ss_pred CceEECCCeEECCceEEc
Q 018060 323 NMTILGEDVHVCDEIYSN 340 (361)
Q Consensus 323 ~~~~ig~~~~v~~~~~i~ 340 (361)
+ ++|++++.|++++.+.
T Consensus 87 ~-siIg~~~~I~~~~~i~ 103 (163)
T cd05636 87 D-SVLGENVNLGAGTITA 103 (163)
T ss_pred c-CEECCCCEECCCcEEc
Confidence 7 8899999999888774
No 96
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.58 E-value=6.1e-14 Score=126.35 Aligned_cols=123 Identities=17% Similarity=0.246 Sum_probs=76.3
Q ss_pred eEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEcc
Q 018060 216 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR 294 (361)
Q Consensus 216 ~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~ 294 (361)
.+.-++.|..-+.....++.... .....+++++.+++++.|++++.|+++++|++++.||++|+|+++|.|+ ++.|++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~-~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~ 144 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPP-KREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGD 144 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccc-cccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCC
Confidence 35556677644433322232111 1234467777777777777777777777777777777777777777775 566777
Q ss_pred CcEECCCCEEe-ccEEcCCCEECCCcEEc--------------------CceEECCCeEECCceEE
Q 018060 295 GVRIKKHACIS-SSIIGWHSTVGQWARVE--------------------NMTILGEDVHVCDEIYS 339 (361)
Q Consensus 295 ~~~i~~~~~i~-~~~i~~~~~ig~~~~i~--------------------~~~~ig~~~~v~~~~~i 339 (361)
+|.|+++++|. +++||++|.|+++++|+ +.++||+++.||+++.+
T Consensus 145 ~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 145 GSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTI 210 (324)
T ss_pred CceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEE
Confidence 77777777776 46677777776666664 13666666666666655
No 97
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.58 E-value=2e-14 Score=102.40 Aligned_cols=79 Identities=35% Similarity=0.561 Sum_probs=72.9
Q ss_pred EEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECC
Q 018060 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 335 (361)
Q Consensus 256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~ 335 (361)
+|++++.|++++.|.+ ++||++|+|++++.|.+++|+++++|++++.+.+++|++++.|++++.+.+++++|+++.+++
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 4788999999999964 999999999999999999999999999999999999999999999999998899999888864
No 98
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.58 E-value=3.4e-14 Score=124.46 Aligned_cols=117 Identities=14% Similarity=0.204 Sum_probs=77.1
Q ss_pred cccCCcEEecceEEcCCCEECCCcEECC------------CcEECCCCEECCCcEEe--------ceEEccCcEECCCCE
Q 018060 244 KLATGANIVGNVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLS--------RCTVMRGVRIKKHAC 303 (361)
Q Consensus 244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~ 303 (361)
.+.+.+.+.+++.|++++.|+++++|++ ++.||++|.|+++|.|. ++.|++++.|++++.
T Consensus 36 ~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~ 115 (254)
T TIGR01852 36 ELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSH 115 (254)
T ss_pred EECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCE
Confidence 3445555555566666666666666652 45666666666666664 345666666666666
Q ss_pred E-eccEEcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060 304 I-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 304 i-~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~ 360 (361)
| ++++||+++.|++++.+..+++||++++|+.++.+. ++.+.+++.|.+++++++++
T Consensus 116 I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~ 180 (254)
T TIGR01852 116 IAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLV 180 (254)
T ss_pred EccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeeecCCCcEE
Confidence 6 346777777777777777777777777777777763 45667777777788877654
No 99
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.57 E-value=1.4e-13 Score=125.79 Aligned_cols=85 Identities=26% Similarity=0.413 Sum_probs=40.5
Q ss_pred CcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe--------------------ccEEcCCCEECCCcEEcC-
Q 018060 266 GCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS--------------------SSIIGWHSTVGQWARVEN- 323 (361)
Q Consensus 266 ~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------~~~i~~~~~ig~~~~i~~- 323 (361)
+|+|++++.||++|.|++++.|. ++.|+++|.|+++++|+ +++|++++.||+++.|..
T Consensus 142 ~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~ 221 (343)
T PRK00892 142 GAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRG 221 (343)
T ss_pred CCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecC
Confidence 33333333444444444444443 24455556666666653 245666666666665531
Q ss_pred ---ceEECCCeEECCceEEc-CcEEccCcee
Q 018060 324 ---MTILGEDVHVCDEIYSN-GGVVLPHKEI 350 (361)
Q Consensus 324 ---~~~ig~~~~v~~~~~i~-~~~i~~~~~v 350 (361)
+++||++++++..+.|. ++.|++++.+
T Consensus 222 ~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i 252 (343)
T PRK00892 222 ALDDTVIGEGVKIDNLVQIAHNVVIGRHTAI 252 (343)
T ss_pred ccccceeCCCCEEeCCeEEccCCEECCCcEE
Confidence 24555555544444442 3344444333
No 100
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.57 E-value=4.2e-14 Score=122.89 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=31.8
Q ss_pred EcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060 309 IGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 309 i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~ 360 (361)
||++++|+.++.+..++.||++++++.++.+. ++.+.+++.|.+++|+++++
T Consensus 122 IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~i~ 180 (255)
T PRK12461 122 IGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCMM 180 (255)
T ss_pred ECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEeccCCCCeEE
Confidence 33333344444444455666666666665552 46777888888899998765
No 101
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.57 E-value=2.9e-14 Score=101.97 Aligned_cols=79 Identities=24% Similarity=0.508 Sum_probs=73.4
Q ss_pred EcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCc
Q 018060 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDE 336 (361)
Q Consensus 257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~ 336 (361)
|+++++|++++.|. ++.||++|.|+++++|.+++|++++.|+++++|.++++++++.|++++.+.+ ++||+++.|+++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~-~ii~~~~~i~~~ 79 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD-CLVGSGYRVEAG 79 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc-CEECCCcEeCCC
Confidence 68888999999995 7999999999999999999999999999999999999999999999999987 999999999887
Q ss_pred e
Q 018060 337 I 337 (361)
Q Consensus 337 ~ 337 (361)
+
T Consensus 80 ~ 80 (81)
T cd04652 80 T 80 (81)
T ss_pred C
Confidence 5
No 102
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.57 E-value=4.6e-14 Score=123.63 Aligned_cols=71 Identities=8% Similarity=0.026 Sum_probs=39.1
Q ss_pred eEEccCcEECCCCEE-eccEEcCCCEECCCcEEcCceEECCCeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060 290 CTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 290 ~~i~~~~~i~~~~~i-~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~ 360 (361)
+.|+++|.|++++.| +++.||+++.|+.++.+..+++||+++.|+.++.+. ++.+.+++.|.+++++++++
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~ 181 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIA 181 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeeecCCCeEE
Confidence 344444444444444 234555555555555555556666666666666653 45556666666677665543
No 103
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=8e-15 Score=135.87 Aligned_cols=99 Identities=21% Similarity=0.366 Sum_probs=90.2
Q ss_pred cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeE
Q 018060 253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVH 332 (361)
Q Consensus 253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~ 332 (361)
.+.|-++.+++...|.++.+++||.++.||.++.|.||+||.||.||+|++|.+|.||++|+||+||.|.. |+||++++
T Consensus 314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~-aii~d~v~ 392 (673)
T KOG1461|consen 314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDH-AIICDDVK 392 (673)
T ss_pred cccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEee-eEeecCcE
Confidence 67888999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred ECCceEEc-CcEEccCceeec
Q 018060 333 VCDEIYSN-GGVVLPHKEIKS 352 (361)
Q Consensus 333 v~~~~~i~-~~~i~~~~~v~~ 352 (361)
|++++.++ |++++.+.++.+
T Consensus 393 i~~~~~l~~g~vl~~~VVv~~ 413 (673)
T KOG1461|consen 393 IGEGAILKPGSVLGFGVVVGR 413 (673)
T ss_pred eCCCcccCCCcEEeeeeEeCC
Confidence 99999995 555555555555
No 104
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.56 E-value=2.3e-13 Score=115.34 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=93.8
Q ss_pred ceEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEc
Q 018060 215 GFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM 293 (361)
Q Consensus 215 ~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~ 293 (361)
..+..+..+....+....+. .........+.+.+.+.+++.|++++.|+++++|++++.||++|.|++++.|. ++.|+
T Consensus 61 ~~iiai~~~~~~~~i~~~l~-~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig 139 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKLK-AKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIG 139 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHH-hCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEEC
Confidence 34555555555444443322 22222334566777888888888888888888888888888888888888887 68888
Q ss_pred cCcEECCCCEEec-cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 294 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 294 ~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+++.|+.++++.. +.|++++.||.++.+.+++.||+++++++++++..
T Consensus 140 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 140 DYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence 8888888888884 78888888888888888888888888888888765
No 105
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.56 E-value=1.8e-13 Score=118.50 Aligned_cols=214 Identities=11% Similarity=0.163 Sum_probs=129.5
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEec
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
.+||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ +++++|+++... ..+.+++.+++... ..+.++.
T Consensus 4 ~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~-~~~~~v~ 79 (230)
T PRK13385 4 ELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVAD-QRVEVVK 79 (230)
T ss_pred EEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCC-CceEEcC
Confidence 589999999999974 57999999999999999999998764 899999998743 33444554432110 0122222
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV 157 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (361)
.+.+..++++.+...+. ..+.++++.||. +.. ..++++++.+.+.+. .+.+.+..+ .+... .+ +.+
T Consensus 80 --~g~~r~~sv~~gl~~~~--~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~~~~~d----ti~~~-~~-~~~ 147 (230)
T PRK13385 80 --GGTERQESVAAGLDRIG--NEDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICAVEVKD----TVKRV-KD-KQV 147 (230)
T ss_pred --CCchHHHHHHHHHHhcc--CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc----eEEEE-cC-Cee
Confidence 22234588888888773 233678889999 444 448999998776543 233333322 12222 22 444
Q ss_pred eeeeecCCCCCCCeEEEEEEEeCHhhHhhccC---CCCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHHHH
Q 018060 158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL---RPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY 233 (361)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~---~~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~~~ 233 (361)
....++. .-+.--+.|.|+.+.+...-+ .......|....+.. ..++..+.-+.....|++|+|+..+...+
T Consensus 148 ~~~i~r~----~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l 223 (230)
T PRK13385 148 IETVDRN----ELWQGQTPQAFELKILQKAHRLASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAIL 223 (230)
T ss_pred EeccCHH----HHhhhcCCceeeHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHH
Confidence 3333211 111222467888776654311 111112232333333 33466666666788999999999987655
Q ss_pred HH
Q 018060 234 LD 235 (361)
Q Consensus 234 l~ 235 (361)
..
T Consensus 224 ~~ 225 (230)
T PRK13385 224 QG 225 (230)
T ss_pred hh
Confidence 43
No 106
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.56 E-value=3.9e-14 Score=124.23 Aligned_cols=38 Identities=5% Similarity=-0.041 Sum_probs=23.6
Q ss_pred CceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060 323 NMTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 323 ~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~ 360 (361)
++++||++++||.++.+ .++.|.+++.|.+++++++++
T Consensus 140 g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~~~ 184 (262)
T PRK05289 140 GHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVLA 184 (262)
T ss_pred cccccCCcEEEeecceecCCCEECCCCEEeeecceeccCCCCeEE
Confidence 34455555555555544 256677777888888877654
No 107
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.56 E-value=5.5e-14 Score=122.58 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=27.8
Q ss_pred CCcEEecceEEcCCCEECCCcEECCCcEECCCCE------ECCCcEEe-ceEEccCcEECCCCEEe
Q 018060 247 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV------VESGVRLS-RCTVMRGVRIKKHACIS 305 (361)
Q Consensus 247 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~------i~~~~~i~-~~~i~~~~~i~~~~~i~ 305 (361)
+++.++++++|+++++||++++|+++++||++|. |.+++.|. ++.||++|.|+++++|+
T Consensus 116 ~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG 181 (338)
T COG1044 116 KNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIG 181 (338)
T ss_pred CCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEc
Confidence 3334444444444444444444444444444444 44444444 35555555555555555
No 108
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.55 E-value=1.8e-13 Score=114.51 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=84.1
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+.. .+++++|+++..... +... ..++.+.....
T Consensus 1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~~ 69 (186)
T TIGR02665 1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA---GFGLPVVPDAL 69 (186)
T ss_pred CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc---cCCCcEEecCC
Confidence 5689999999999964 59999999999999999999976 489999988765322 1111 11344433322
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eecc-CHHHHHHHHHHcC
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKAHG 129 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~-~l~~~~~~~~~~~ 129 (361)
....|+..+++.+.+.+ . .+.+++++||+ +... .++++++.+.+.+
T Consensus 70 ~~~~g~~~si~~al~~~--~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 117 (186)
T TIGR02665 70 ADFPGPLAGILAGLRWA--G-TDWVLTVPCDTPFLPEDLVARLAAALEASD 117 (186)
T ss_pred CCCCCCHHHHHHHHHhc--C-CCeEEEEecCCCcCCHHHHHHHHHHhhccC
Confidence 34578999999999877 2 34899999999 4443 4778887765433
No 109
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.55 E-value=1.3e-13 Score=116.08 Aligned_cols=116 Identities=17% Similarity=0.407 Sum_probs=71.2
Q ss_pred cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-ccEEcCCCEECCCcE--
Q 018060 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWAR-- 320 (361)
Q Consensus 244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~-- 320 (361)
.+++++.+.+++.|++++.|++++.|+ ++.||++|.|++++.+.++.|++++.|+++++|. +++|++++.|++++.
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~ 101 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIK 101 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEe
Confidence 445555555666666666666666663 4466777777776666666666666666666665 244444443333222
Q ss_pred --------------------------------Ec-------CceEECCCeEECCceEE-------cCcEEccCceeeccc
Q 018060 321 --------------------------------VE-------NMTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSI 354 (361)
Q Consensus 321 --------------------------------i~-------~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~ 354 (361)
+. ..++||++++++.++.+ .++.+.+++.|.+++
T Consensus 102 ~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v 181 (193)
T cd03353 102 KSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDV 181 (193)
T ss_pred cceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEcccc
Confidence 21 12456666666666554 367778888899999
Q ss_pred CCCccc
Q 018060 355 LKPEIV 360 (361)
Q Consensus 355 ~~~~~~ 360 (361)
|+++++
T Consensus 182 ~~~~~v 187 (193)
T cd03353 182 PPGALA 187 (193)
T ss_pred CCCCEE
Confidence 998875
No 110
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.55 E-value=8.7e-14 Score=121.91 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=64.2
Q ss_pred cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-------------ceEEccCcEECCCCEEec----
Q 018060 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS---- 306 (361)
Q Consensus 244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~---- 306 (361)
.+++.+.+.++++|++++.|+++|+|++++.||++|.|++++.|. ++.|+++|.|+++|+|..
T Consensus 19 ~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~ 98 (254)
T cd03351 19 EIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQ 98 (254)
T ss_pred EECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccC
Confidence 345555555666666666666666666667777777777777775 567888888888888763
Q ss_pred ----cEEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060 307 ----SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 339 (361)
Q Consensus 307 ----~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i 339 (361)
++||+++.|++++.|..+++||+++.++.++.+
T Consensus 99 ~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i 135 (254)
T cd03351 99 GGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATL 135 (254)
T ss_pred CCCceEECCCCEECCCCEECCCCEECCCcEECCCccc
Confidence 567777777777777555666666666655544
No 111
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.55 E-value=3e-13 Score=114.01 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=77.5
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCCEECCCc
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWA 319 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~ 319 (361)
...+++.+.+.+++.+++++.|+++|+|++++.||++|.|+.++.|. ++.|+++|.|+.++.+.+ ++|++++.||.++
T Consensus 84 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~ 163 (197)
T cd03360 84 ATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGA 163 (197)
T ss_pred ceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCC
Confidence 34455666777777788888888888888788888888888888876 577888888888888765 7888888888888
Q ss_pred EEcCceEECCCeEECCceEEcC
Q 018060 320 RVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 320 ~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
.+.++++||+++.+++++++..
T Consensus 164 ~v~~~~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 164 TIIQGVTIGAGAIIGAGAVVTK 185 (197)
T ss_pred EEcCCCEECCCCEECCCCEEcC
Confidence 8887788888888887777654
No 112
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.54 E-value=1.2e-13 Score=111.51 Aligned_cols=105 Identities=21% Similarity=0.323 Sum_probs=93.4
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEec-----eEEccCcEECCCCEEeccEEcCCC
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHS 313 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~ 313 (361)
...+++.+.|.+++++++++.|+++++|.++ ++||++|.|+++|.|.+ +.|++++.|+.+|.+.+++|++++
T Consensus 5 ~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~ 84 (153)
T cd04645 5 SAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNC 84 (153)
T ss_pred CeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCC
Confidence 4567888889899999999999999998753 69999999999999986 599999999999999999999999
Q ss_pred EECCCcEEcCceEECCCeEECCceEEcCcEEcc
Q 018060 314 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLP 346 (361)
Q Consensus 314 ~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~ 346 (361)
.|+.++.+.++++|++++.+++++.+......+
T Consensus 85 ~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~ 117 (153)
T cd04645 85 LIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIP 117 (153)
T ss_pred EECCCCEEcCCCEECCCCEECCCCEECCCCEeC
Confidence 999999999889999999999999886543333
No 113
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.54 E-value=1.3e-13 Score=120.19 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=10.6
Q ss_pred ceEECCCeEECCceEEc
Q 018060 324 MTILGEDVHVCDEIYSN 340 (361)
Q Consensus 324 ~~~ig~~~~v~~~~~i~ 340 (361)
.++||++|.||+++.|.
T Consensus 202 ~V~Igd~VeIGanT~Id 218 (338)
T COG1044 202 RVIIGDDVEIGANTTID 218 (338)
T ss_pred eEEECCceEEcccceec
Confidence 35666666666666664
No 114
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.54 E-value=1.7e-13 Score=112.13 Aligned_cols=109 Identities=19% Similarity=0.341 Sum_probs=93.7
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECC----CcEECCCCEECCCcEEe-----ceEEccCcEECCCCEEec-cEEcC
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS-SIIGW 311 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~-~~i~~ 311 (361)
...+++++.+.+++.|+++++|++++.|+. ++.||++|.|++++.|. ++.|++++.|++++.|.+ ++||+
T Consensus 8 ~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~ 87 (167)
T cd00710 8 SAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGD 87 (167)
T ss_pred CeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECC
Confidence 456778888888888888888888888865 47899999999999994 588999999999999997 89999
Q ss_pred CCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceee
Q 018060 312 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK 351 (361)
Q Consensus 312 ~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~ 351 (361)
++.||.++.|.+ +.||+++.|++++.+.+..+.++..+.
T Consensus 88 ~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~~~~i~~~~~v~ 126 (167)
T cd00710 88 NCFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYVP 126 (167)
T ss_pred CCEECCCCEEEC-CEECCCCEEcCCCEEeCCEeCCCCEEC
Confidence 999999999986 999999999999999876666666653
No 115
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.54 E-value=9.1e-14 Score=116.69 Aligned_cols=123 Identities=14% Similarity=0.175 Sum_probs=86.7
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
+.+||||||+|+||+. ||.|++++|+|||+|+++.+.+.++++++|+++.+.+.+...........++.+.....
T Consensus 1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRD 75 (190)
T ss_pred CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCC
Confidence 4689999999999976 89999999999999999988888899999999876432211111100112344443333
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcC
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHG 129 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~ 129 (361)
. ..|...+++.+.+.+...+.+.+++++||+ +....+..+++...++.
T Consensus 76 ~-~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 76 A-CEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred h-hhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 2 347889999998876332345899999999 33344788887765433
No 116
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.53 E-value=7.4e-14 Score=99.54 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=72.0
Q ss_pred EEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECC
Q 018060 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 335 (361)
Q Consensus 256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~ 335 (361)
+|+++++|++++.|. ++.|+++|.|+++++|.+++|++++.|+++++|.+++|++++.|++++.+.+++++++++.+|+
T Consensus 1 ~ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 1 VIGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred CccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 368889999999995 7999999999999999999999999999999999999999999999999988888888888774
No 117
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.53 E-value=4e-13 Score=113.45 Aligned_cols=111 Identities=21% Similarity=0.272 Sum_probs=80.8
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
+.+||||||+|+||+. +|+|++++|+|||+|+++.+... +++++|++++. +....... .++.+....
T Consensus 8 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~-----~~~~~i~~~- 74 (200)
T PRK02726 8 LVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLP-----PGCHWLREP- 74 (200)
T ss_pred ceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhcc-----CCCeEecCC-
Confidence 3599999999999965 89999999999999999999765 78999988642 22222211 133333222
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHH
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKA 127 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~-~~~~l~~~~~~~~~ 127 (361)
....|...+++.+...+. . +.+++++||+ + ....++.+++.+..
T Consensus 75 ~~~~G~~~si~~~l~~~~--~-~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 75 PPSQGPLVAFAQGLPQIK--T-EWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCCChHHHHHHHHHhCC--C-CcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 223588999999998873 2 4899999999 3 33447888877543
No 118
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.53 E-value=2.7e-13 Score=115.28 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=32.3
Q ss_pred EcCCCEECCCcEEcCceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060 309 IGWHSTVGQWARVENMTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 309 i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~ 360 (361)
|++++.|+.++.+.+++.||++++|+.++.+ .++.+.+++.+.+++++++++
T Consensus 135 ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~~~~ 193 (205)
T cd03352 135 IGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEYV 193 (205)
T ss_pred ECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeECCCCCEE
Confidence 3333444333333344666666666666665 257778888888888888775
No 119
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.52 E-value=1.7e-13 Score=123.48 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=15.8
Q ss_pred CcEEccCceeecccCCCccc
Q 018060 341 GGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 341 ~~~i~~~~~v~~~~~~~~~~ 360 (361)
++.+++++.|.+++++++++
T Consensus 277 ~~~ig~~s~V~~~v~~~~~~ 296 (324)
T TIGR01853 277 NVTIGAKSGVTKSIPPPGVY 296 (324)
T ss_pred CCEEccCCEeCCcCCCCcEE
Confidence 57778888888888888764
No 120
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.52 E-value=1.7e-13 Score=120.16 Aligned_cols=60 Identities=32% Similarity=0.497 Sum_probs=25.8
Q ss_pred ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEE
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI 304 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 304 (361)
+++++.|++.+.|++++.|+++|.|++++.||++|.|++++.|. ++.||++|.|+++++|
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 65 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence 34444444444444444444444444444444444444444443 3444444444444444
No 121
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.51 E-value=2.2e-13 Score=114.55 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=72.1
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec---------------
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS--------------- 306 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~--------------- 306 (361)
...+++++.+. ++.||+++.|+++|.|. ++.||.++.|+.++.+.++.||++|.|++++.|.+
T Consensus 8 ~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~ 85 (204)
T TIGR03308 8 EPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTY 85 (204)
T ss_pred CCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccc
Confidence 44677788885 47889999999999884 88999999999999998899999999999988852
Q ss_pred -----------------------cEEcCCCEECCCcEEcCceEECCCeEECCceEEc
Q 018060 307 -----------------------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN 340 (361)
Q Consensus 307 -----------------------~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~ 340 (361)
++||+++.||.++.|.+++.||++++|++++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~ 142 (204)
T TIGR03308 86 RAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVT 142 (204)
T ss_pred ccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence 3455555555555555555555555555555554
No 122
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.51 E-value=2.5e-13 Score=113.23 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=68.6
Q ss_pred cCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEec-----cEEcCCCEECCCcEEcCceEEC
Q 018060 258 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTILG 328 (361)
Q Consensus 258 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~ig 328 (361)
+++++|++++.|.+++.||++|.|+.+|.|. .++|+++|.||++|+|+. ++|++++.||+++.+.+ ++||
T Consensus 14 ~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g-~vIG 92 (196)
T PRK13627 14 HPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG-CVIG 92 (196)
T ss_pred CCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee-EEEC
Confidence 4444444444443444455555555555553 256788888888888864 68999999999988876 8888
Q ss_pred CCeEECCceEEc-------CcEEccCceeeccc--CCCccc
Q 018060 329 EDVHVCDEIYSN-------GGVVLPHKEIKSSI--LKPEIV 360 (361)
Q Consensus 329 ~~~~v~~~~~i~-------~~~i~~~~~v~~~~--~~~~~~ 360 (361)
+++.||.++.+. ++.+.+++.|.+++ |+++++
T Consensus 93 ~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~ 133 (196)
T PRK13627 93 RDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLL 133 (196)
T ss_pred CCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEE
Confidence 888888777663 46667777777755 666665
No 123
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=109.13 Aligned_cols=111 Identities=23% Similarity=0.268 Sum_probs=89.7
Q ss_pred CcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec-----cEEcCCCEECCCcEEc
Q 018060 248 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVE 322 (361)
Q Consensus 248 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~ 322 (361)
...|+++++|.|+|.|-.++.|+.++.|++++++.... ..-.||+++.|++||+|+. ++||+++.||+++.|.
T Consensus 11 ~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivH 88 (176)
T COG0663 11 SPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVH 88 (176)
T ss_pred CCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEE
Confidence 44566778888888888888888888888888887765 5678999999999999995 5999999999999999
Q ss_pred CceEECCCeEECCceEEc-------CcEEccCceeec--ccCCCcccC
Q 018060 323 NMTILGEDVHVCDEIYSN-------GGVVLPHKEIKS--SILKPEIVM 361 (361)
Q Consensus 323 ~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~--~~~~~~~~~ 361 (361)
+ |.||+++.||.++++. ++.|++++.|.. .+|.+++++
T Consensus 89 G-c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~ 135 (176)
T COG0663 89 G-CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVV 135 (176)
T ss_pred E-eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEee
Confidence 8 9999999999998874 455566666654 666666653
No 124
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.50 E-value=5e-13 Score=117.08 Aligned_cols=97 Identities=11% Similarity=0.213 Sum_probs=68.7
Q ss_pred ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-------------ceEEccCcEECCCCEEec---
Q 018060 243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS--- 306 (361)
Q Consensus 243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~--- 306 (361)
..+++.+.+.+++.|++++.|+++|.|.+++.||++|.|++++.|. +++||++|.|+++|+|..
T Consensus 17 ~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~ 96 (254)
T TIGR01852 17 VEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTA 96 (254)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCccc
Confidence 3455566666666666666666777776677788888888888886 577888888888888873
Q ss_pred -----cEEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060 307 -----SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 339 (361)
Q Consensus 307 -----~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i 339 (361)
++||+++.|+.++.|..+|.||+++.+++++.+
T Consensus 97 ~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i 134 (254)
T TIGR01852 97 SGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATL 134 (254)
T ss_pred CCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEE
Confidence 467777777777777555666666666666555
No 125
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.49 E-value=3.7e-13 Score=108.84 Aligned_cols=102 Identities=16% Similarity=0.265 Sum_probs=63.2
Q ss_pred cCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEE-----eccEEcCCCEECCCcEEcCceEEC
Q 018060 258 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI-----SSSIIGWHSTVGQWARVENMTILG 328 (361)
Q Consensus 258 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~~~i~~~~~ig~~~~i~~~~~ig 328 (361)
++++.|+++++|.+++.||++|.|+++|.|. .+.|+++|.|+++|+| .+++|++++.|++++.+.+ ++||
T Consensus 4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig 82 (155)
T cd04745 4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG-CTIG 82 (155)
T ss_pred CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC-CEEC
Confidence 4444455555554555566666666666554 3677788888888877 4577888888888777665 6666
Q ss_pred CCeEECCceEEc-------CcEEccCceeec--ccCCCccc
Q 018060 329 EDVHVCDEIYSN-------GGVVLPHKEIKS--SILKPEIV 360 (361)
Q Consensus 329 ~~~~v~~~~~i~-------~~~i~~~~~v~~--~~~~~~~~ 360 (361)
+++.|+.++.+. ++.+.+++.+.. .+++++++
T Consensus 83 ~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v 123 (155)
T cd04745 83 RNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLI 123 (155)
T ss_pred CCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEE
Confidence 666666665553 344555555544 45555543
No 126
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.49 E-value=5e-13 Score=108.68 Aligned_cols=106 Identities=17% Similarity=0.281 Sum_probs=80.9
Q ss_pred ccCCcEEe--cceEEcCCCEECCCcEECCC---cEECCCCEECCCcEEec-------------eEEccCcEECCCCEEec
Q 018060 245 LATGANIV--GNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS 306 (361)
Q Consensus 245 ~~~~~~i~--~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~ 306 (361)
++..+.|. +++++++++.|+++|.|.++ +.||++|.|+++|.|.. +.|++++.|++++++.+
T Consensus 10 i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~ 89 (161)
T cd03359 10 VSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNA 89 (161)
T ss_pred ecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEe
Confidence 44444453 26667777777777776643 57777777777777753 57999999999999999
Q ss_pred cEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcE-EccCcee
Q 018060 307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV-VLPHKEI 350 (361)
Q Consensus 307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~-i~~~~~v 350 (361)
++|++++.||+++.|..+++|++++.+++++.+.... +.|.+.+
T Consensus 90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv 134 (161)
T cd03359 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVV 134 (161)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEE
Confidence 9999999999999999999999999999998886544 4444433
No 127
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.49 E-value=5e-13 Score=114.47 Aligned_cols=105 Identities=19% Similarity=0.319 Sum_probs=79.4
Q ss_pred EEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe-ccEEcCCCEECCCcEEcC--------ce
Q 018060 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVEN--------MT 325 (361)
Q Consensus 256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~--------~~ 325 (361)
+++.++.|++++.|.+++.||++++|+.++.|. ++.|+++|.|++++.|. +++||++|.||.++.+.+ ++
T Consensus 82 ~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v 161 (231)
T TIGR03532 82 LKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPV 161 (231)
T ss_pred ccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCe
Confidence 456677777777777777777777777777776 57788888888888886 588888888888888863 46
Q ss_pred EECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060 326 ILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 326 ~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~ 360 (361)
+||++++||+++.+ .++.+.+++.|.+++++++++
T Consensus 162 ~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv 203 (231)
T TIGR03532 162 VIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVV 203 (231)
T ss_pred EECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEE
Confidence 77777777766666 356677788888888888765
No 128
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.48 E-value=3e-13 Score=112.30 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=71.6
Q ss_pred EEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEE-----eccEEcCCCEECCCcEEcCceE
Q 018060 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI-----SSSIIGWHSTVGQWARVENMTI 326 (361)
Q Consensus 256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~~~i~~~~~ig~~~~i~~~~~ 326 (361)
.|+++++|++++.|.++++||++|.|+++|.|. ..+|+++|.||++|+| .+++|++++.|++++.|.+ |+
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~-si 88 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG-CI 88 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC-CE
Confidence 345555555555555556666666666666664 4688999999999998 4589999999999988887 88
Q ss_pred ECCCeEECCceEEc-------CcEEccCceeec--ccCCCccc
Q 018060 327 LGEDVHVCDEIYSN-------GGVVLPHKEIKS--SILKPEIV 360 (361)
Q Consensus 327 ig~~~~v~~~~~i~-------~~~i~~~~~v~~--~~~~~~~~ 360 (361)
||+++.||.++.+. ++.+.+++.|.. .++.++++
T Consensus 89 Ig~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~ 131 (192)
T TIGR02287 89 VGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLV 131 (192)
T ss_pred ECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEE
Confidence 88888888776663 445555555554 45555543
No 129
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.48 E-value=8.7e-13 Score=104.63 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=39.3
Q ss_pred ceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe---------ceEEccCcEECCCCEEec-cEEcCCCEECCCcEEcC
Q 018060 254 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVEN 323 (361)
Q Consensus 254 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~ 323 (361)
++.|++++.|++++.|++++.||++|.|+.++.+. +++|++++.|++++.|.+ +.|++++.|++++.|.+
T Consensus 31 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~ 110 (139)
T cd03350 31 GAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQ 110 (139)
T ss_pred CCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcC
Confidence 33333334444444444444444444444444443 144555555555555532 45555555555555555
Q ss_pred ceEECCCeEECCceEE
Q 018060 324 MTILGEDVHVCDEIYS 339 (361)
Q Consensus 324 ~~~ig~~~~v~~~~~i 339 (361)
+..|+++ ++++++
T Consensus 111 ~~~I~~~---~~~~~v 123 (139)
T cd03350 111 STPIYDR---ETGEIY 123 (139)
T ss_pred CeEeccc---CcccEE
Confidence 5555555 444444
No 130
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.48 E-value=3.5e-13 Score=128.69 Aligned_cols=117 Identities=17% Similarity=0.393 Sum_probs=69.9
Q ss_pred ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec-cEEcCCCEECCC---
Q 018060 243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQW--- 318 (361)
Q Consensus 243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~--- 318 (361)
..+++++.|.+++.||+++.|+++|.|. ++.||++|.|+++|.|.++.|+++|.||++++|.+ ++|++++.||++
T Consensus 268 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i 346 (451)
T TIGR01173 268 VEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVET 346 (451)
T ss_pred CEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceee
Confidence 3455666666666666666666666663 56666666666666665555555555555555542 344433333332
Q ss_pred -------------------------cEEcC-------------ceEECCCeEECCceEE-------cCcEEccCceeecc
Q 018060 319 -------------------------ARVEN-------------MTILGEDVHVCDEIYS-------NGGVVLPHKEIKSS 353 (361)
Q Consensus 319 -------------------------~~i~~-------------~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~ 353 (361)
+.|+. +++||+++.||.++.+ .++.|++++.|.++
T Consensus 347 ~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~ 426 (451)
T TIGR01173 347 KNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKD 426 (451)
T ss_pred cCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEECcc
Confidence 22221 2455566666655543 36788888899999
Q ss_pred cCCCccc
Q 018060 354 ILKPEIV 360 (361)
Q Consensus 354 ~~~~~~~ 360 (361)
+|+++++
T Consensus 427 v~~~~~~ 433 (451)
T TIGR01173 427 VPEGALA 433 (451)
T ss_pred CCCCcEE
Confidence 9998875
No 131
>PLN02296 carbonate dehydratase
Probab=99.47 E-value=5.7e-13 Score=116.06 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=70.6
Q ss_pred EEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-----------ccEEcCCCEECCC
Q 018060 250 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-----------SSIIGWHSTVGQW 318 (361)
Q Consensus 250 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----------~~~i~~~~~ig~~ 318 (361)
.+.++++|++++.+.+++.|+++|.|+++|+|...+ .++.|+++|.|+++|+|. +++||+++.||++
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~--~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~ 131 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHS 131 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCC--CceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCC
Confidence 344445555555554444444444444444444331 245788888888888885 5789999999998
Q ss_pred cEEcCceEECCCeEECCceEEc-------CcEEccCceeecc--cCCCccc
Q 018060 319 ARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSS--ILKPEIV 360 (361)
Q Consensus 319 ~~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~--~~~~~~~ 360 (361)
|.|.+ |+||+++.||.++.+. ++.|.+++.|..+ ++.++++
T Consensus 132 avI~g-~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~ 181 (269)
T PLN02296 132 AVLHG-CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVW 181 (269)
T ss_pred ceecC-CEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEE
Confidence 88765 7777777777666663 4566677777665 7777765
No 132
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.47 E-value=4.8e-13 Score=103.35 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=69.4
Q ss_pred cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 323 (361)
Q Consensus 244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 323 (361)
.+.+.+.+.+++.|+++++|++++.|++++.||++|.|++++.+.|+.+. +..+..++.+.+++|++++.||+++.+.+
T Consensus 6 ~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~-~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~ 84 (119)
T cd03358 6 IIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYP-RSKIYRKWELKGTTVKRGASIGANATILP 84 (119)
T ss_pred EECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCC-ccccccccccCCcEECCCcEECcCCEEeC
Confidence 34555566666666666666666666666666666666666666654433 33344466788899999999999999988
Q ss_pred ceEECCCeEECCceEEcC
Q 018060 324 MTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 324 ~~~ig~~~~v~~~~~i~~ 341 (361)
+++||+++.|++++.+..
T Consensus 85 ~~~ig~~~~i~~~~~v~~ 102 (119)
T cd03358 85 GVTIGEYALVGAGAVVTK 102 (119)
T ss_pred CcEECCCCEEccCCEEeC
Confidence 899999999998888865
No 133
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.47 E-value=3.6e-12 Score=110.57 Aligned_cols=186 Identities=18% Similarity=0.254 Sum_probs=112.4
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccCh--HHHHHHHHHhhhccCcEEEEec
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~--~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
|||||+|.++|| + +|+|++++|+||++|+++.+.+++ +++++|+++... +.+.+++... ++.+...+
T Consensus 2 aiIlA~G~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~----~v~~v~~~ 71 (233)
T cd02518 2 AIIQARMGSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL----GVKVFRGS 71 (233)
T ss_pred EEEeeCCCCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc----CCeEEECC
Confidence 799999999999 3 499999999999999999999987 899999998764 5566555432 44443332
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV 157 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (361)
.. +.......+... .+.+.++++.||+ +....++++++.+..++.+.+.....
T Consensus 72 ~~---~~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~------------------- 126 (233)
T cd02518 72 EE---DVLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLP------------------- 126 (233)
T ss_pred ch---hHHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCCC-------------------
Confidence 21 222222222221 2234899999999 33445899998887655444321000
Q ss_pred eeeeecCCCCCCCeEEEEEEEeCHhhHhhccCCC-CccccchHHhHHhcCc--eEEEEecc-------eEEEcCCHHHHH
Q 018060 158 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-TSIEKEVFPKIALEGK--LFAMVLPG-------FWMDIGQPRDYI 227 (361)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~-~~~~~d~l~~l~~~~~--i~~~~~~~-------~~~~i~t~~dy~ 227 (361)
.+..+.-+.-+|+...+..+.... .....+.+..++++.. +....++. ...|+|||+||.
T Consensus 127 ----------~g~Pv~~~~~~~~~~~~~~l~~~~gd~g~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~ 196 (233)
T cd02518 127 ----------RTYPDGLDVEVFTRDALERAAAEADDPYEREHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFE 196 (233)
T ss_pred ----------CCCCCceEEEEEEHHHHHHHHHhCCChhhhcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHH
Confidence 111122355677777776654222 1122233322233322 32222222 378999999997
Q ss_pred HHHHHH
Q 018060 228 TGLRLY 233 (361)
Q Consensus 228 ~a~~~~ 233 (361)
.+...+
T Consensus 197 ~~~~~~ 202 (233)
T cd02518 197 LIKEIY 202 (233)
T ss_pred HHHHHH
Confidence 776543
No 134
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.46 E-value=1.2e-12 Score=110.14 Aligned_cols=104 Identities=14% Similarity=0.199 Sum_probs=87.3
Q ss_pred EEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEc-------------
Q 018060 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE------------- 322 (361)
Q Consensus 256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~------------- 322 (361)
.+++++.|+++|.| .++.||++++|+++|+|.++.||++++|++++.+.+++||++|.|++++.+.
T Consensus 4 ~~~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~ 82 (204)
T TIGR03308 4 LLSPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHH 82 (204)
T ss_pred ccCCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccc
Confidence 46777888888888 4789999999999999999999999999999999999999999999998875
Q ss_pred ------------------------CceEECCCeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060 323 ------------------------NMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 323 ------------------------~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~ 360 (361)
.+++||+++.||.++.+. ++.+.+++.|.+++++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~ 151 (204)
T TIGR03308 83 FTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIV 151 (204)
T ss_pred cccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEE
Confidence 256777777777777763 56777788888888888764
No 135
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.46 E-value=9.8e-13 Score=107.08 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=22.8
Q ss_pred cCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEec
Q 018060 258 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS 306 (361)
Q Consensus 258 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~ 306 (361)
++++.|.+++.|.+++.||++|.|++++.|. .++||++|.|+++|+|.+
T Consensus 3 ~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~ 55 (164)
T cd04646 3 APGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVN 55 (164)
T ss_pred CCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEec
Confidence 3444444444444444444444444444442 235555555555555543
No 136
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.46 E-value=1.1e-12 Score=119.93 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=61.5
Q ss_pred cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe--------------------ceEEccCcEECCCCEEe
Q 018060 246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS--------------------RCTVMRGVRIKKHACIS 305 (361)
Q Consensus 246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~--------------------~~~i~~~~~i~~~~~i~ 305 (361)
.+++.|.+++.||+++.|+++++|.+++.||++|+|++++.|+ +++|++++.||.+++|.
T Consensus 140 ~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~ 219 (343)
T PRK00892 140 GAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTID 219 (343)
T ss_pred CCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEe
Confidence 3344444444444444444444444455566666666666663 35667777777776663
Q ss_pred -----ccEEcCCCEECCCc------------------EEcCceEECCCeEECCceEEc-------CcEEccCceeecccC
Q 018060 306 -----SSIIGWHSTVGQWA------------------RVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSIL 355 (361)
Q Consensus 306 -----~~~i~~~~~ig~~~------------------~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~~~~~ 355 (361)
+++||+++.|+..+ .+.++++||+++.++.++.+. ++.+++++.|.++++
T Consensus 220 ~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~ 299 (343)
T PRK00892 220 RGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIP 299 (343)
T ss_pred cCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCccC
Confidence 23344333333333 333345555555555555542 466777777777887
Q ss_pred C-Ccc
Q 018060 356 K-PEI 359 (361)
Q Consensus 356 ~-~~~ 359 (361)
+ +.+
T Consensus 300 ~~~~~ 304 (343)
T PRK00892 300 EPGEY 304 (343)
T ss_pred CCCeE
Confidence 7 544
No 137
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.46 E-value=2.6e-12 Score=118.28 Aligned_cols=185 Identities=16% Similarity=0.257 Sum_probs=113.3
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.+||||||+|+||+. .||+|++++|+|||+|+++.+... +++++|+++.+.+.+.+++. ++.+.....
T Consensus 6 i~~VILAgG~s~Rmgg----~~K~ll~i~Gkpll~~~i~~l~~~-~~~iivvv~~~~~~~~~~~~------~~~~i~d~~ 74 (366)
T PRK14489 6 IAGVILAGGLSRRMNG----RDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPARYQDLFP------GLPVYPDIL 74 (366)
T ss_pred ceEEEEcCCcccCCCC----CCCceeEECCeeHHHHHHHHHHhh-CCEEEEEcCCCHHHHHhhcc------CCcEEecCC
Confidence 4599999999999952 499999999999999999999864 89999977765444443322 123322222
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
....|...+++.+.+.+ . .+.+++++||+ +.. ..++.+++.+..++.++++. . .+ ++
T Consensus 75 ~g~~G~~~si~~gl~~~--~-~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~--~------------~g--~~-- 133 (366)
T PRK14489 75 PGFQGPLSGILAGLEHA--D-SEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP--H------------DG--ER-- 133 (366)
T ss_pred CCCCChHHHHHHHHHhc--C-CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE--e------------cC--CC--
Confidence 22257888899988876 2 23799999999 333 34778887655444432221 0 00 00
Q ss_pred eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEec---ceEEEcCCHHHHHHHHH
Q 018060 159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP---GFWMDIGQPRDYITGLR 231 (361)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~---~~~~~i~t~~dy~~a~~ 231 (361)
. ..=+-+++++++..+......-...+... +.+..+....++ ..+.+++||+||.++..
T Consensus 134 ----------g---~Pl~aiy~~~~~~~l~~~l~~G~~~l~~~-l~~~~~~~v~~~~~~~~~~nINTpeDl~~l~~ 195 (366)
T PRK14489 134 ----------A---HPLFALYHRSCLPALRRYLAEGERRLFDF-FQRQRVRYVDLSTQKDAFFNVNTPEDLEQLRA 195 (366)
T ss_pred ----------c---eeeEEEEcHHHHHHHHHHHHhCCccHHHH-HHhCCcEEEeccCCccccccCCCHHHHHHHhh
Confidence 0 01112457777766642111111122222 233334344433 35789999999987754
No 138
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.46 E-value=5.6e-12 Score=109.57 Aligned_cols=207 Identities=14% Similarity=0.212 Sum_probs=118.3
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEec
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
.+||||||.|+||+. ..||+|++++|+|+|+|+++.+.+. ++++++|+++.+. +.++..+..+ +..+.+..
T Consensus 26 ~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~----~~~i~~v~ 98 (252)
T PLN02728 26 SVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI----DVPLKFAL 98 (252)
T ss_pred EEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc----CCceEEcC
Confidence 589999999999975 6899999999999999999999885 7999999999753 3344444332 33344332
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCC--e--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCC
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--V--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTG 155 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D--~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~ 155 (361)
...+..++++.+...+.. + ..+|+.+| . +....+..+++...+.+ +.+...+..+ .+...+++ +
T Consensus 99 --gg~~r~~SV~~gl~~l~~-~--~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~~d----tik~v~~~-~ 166 (252)
T PLN02728 99 --PGKERQDSVFNGLQEVDA-N--SELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPVKA----TIKEANSD-S 166 (252)
T ss_pred --CCCchHHHHHHHHHhccC-C--CCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecchh----hEEEecCC-C
Confidence 223457889988887742 2 33455555 4 33344788888776654 3444444333 22223332 3
Q ss_pred eEeeeeecCCCCCCCe-EEEEEEEeCHhhHhhc-c---CCCCccccchHHhHHhcC-ceEEEEecceEEEcCCHHHHHHH
Q 018060 156 KVEKFVEKPKLFVGNK-INAGIYLLNPAVLDRI-E---LRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITG 229 (361)
Q Consensus 156 ~v~~~~ek~~~~~~~~-~~~Giyi~~~~~l~~l-~---~~~~~~~~d~l~~l~~~~-~i~~~~~~~~~~~i~t~~dy~~a 229 (361)
.+...... +.+ .--.=..|+.+.+... + .....+ .|-...+...+ ++...+-+...+-|.+|+|+..+
T Consensus 167 ~v~~t~~R-----~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~~-TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a 240 (252)
T PLN02728 167 FVVKTLDR-----KRLWEMQTPQVIKPELLRRGFELVEREGLEV-TDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVA 240 (252)
T ss_pred ceeeccCh-----HHeEEEeCCccchHHHHHHHHHHHHhcCCCc-CcHHHHHHHcCCceEEEecCcccccCCCHHHHHHH
Confidence 33332110 000 0001123444433321 1 111111 22222332333 34444444466788999999888
Q ss_pred HHHH
Q 018060 230 LRLY 233 (361)
Q Consensus 230 ~~~~ 233 (361)
...+
T Consensus 241 ~~~l 244 (252)
T PLN02728 241 ERIL 244 (252)
T ss_pred HHHH
Confidence 7543
No 139
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.45 E-value=6.7e-13 Score=99.51 Aligned_cols=79 Identities=23% Similarity=0.437 Sum_probs=68.9
Q ss_pred CEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEc
Q 018060 261 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN 340 (361)
Q Consensus 261 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~ 340 (361)
++|++++.| .+++||++|.|+ ++.|.+|+|++++.|+++++|.+|++++++.||.++.+.+ ++||+++.|++++.+.
T Consensus 2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~-siig~~~~Ig~~~~v~ 78 (104)
T cd04651 2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRR-AIIDKNVVIPDGVVIG 78 (104)
T ss_pred ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEe-EEECCCCEECCCCEEC
Confidence 567777777 578899999998 8899999999999999999999999999999999999975 9999999999998887
Q ss_pred Cc
Q 018060 341 GG 342 (361)
Q Consensus 341 ~~ 342 (361)
+.
T Consensus 79 ~~ 80 (104)
T cd04651 79 GD 80 (104)
T ss_pred CC
Confidence 64
No 140
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.45 E-value=3e-12 Score=106.26 Aligned_cols=110 Identities=23% Similarity=0.347 Sum_probs=79.3
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.+||||+|+++|| . +|+|++++|+||++|++++|.... +.+++....+.+. +.. ++.++.....
T Consensus 5 ~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~-~~vvi~~~~~~~~---~~~-----~g~~vv~D~~ 69 (192)
T COG0746 5 MTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQV-DVVVISANRNQGR---YAE-----FGLPVVPDEL 69 (192)
T ss_pred ceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhcccC-CEEEEeCCCchhh---hhc-----cCCceeecCC
Confidence 67999999999999 5 899999999999999999999884 4555555554332 221 1455543333
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccC-HHHHHHHHHHcC
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~~-l~~~~~~~~~~~ 129 (361)
... |....++.+++... .+.+++++||+ +...+ ++.+.+...+..
T Consensus 70 ~~~-GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 70 PGF-GPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCC-CCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 333 89999999998883 34899999999 44433 566666654433
No 141
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.45 E-value=1.2e-12 Score=113.89 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=27.7
Q ss_pred cEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-------------ceEEccCcEECCCCEEe
Q 018060 249 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACIS 305 (361)
Q Consensus 249 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~ 305 (361)
+.+.+++.|++++.|+++++|.+++.||++|.|++++.|+ ...||+++.|++++.|.
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIH 93 (255)
T ss_pred CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEe
Confidence 3333333344444444444444444455555555555553 24566666666666665
No 142
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=124.70 Aligned_cols=119 Identities=17% Similarity=0.281 Sum_probs=81.8
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec-cEEc----------
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIG---------- 310 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~---------- 310 (361)
...+.+++.|.+++.|++++.|+++|+|+ +|+||++|+|++++.+.+++|++++.||+++++.. +.|+
T Consensus 274 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ 352 (459)
T PRK14355 274 DTTIYPGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVE 352 (459)
T ss_pred CCEEeCCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcc
Confidence 34456677777777788888888888884 78889999999999888888888888776666653 3333
Q ss_pred ------------------------CCCEECCCcEEc-------CceEECCCeEECCceEE-------cCcEEccCceeec
Q 018060 311 ------------------------WHSTVGQWARVE-------NMTILGEDVHVCDEIYS-------NGGVVLPHKEIKS 352 (361)
Q Consensus 311 ------------------------~~~~ig~~~~i~-------~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~ 352 (361)
+++.||.++.+. .+++||+++.+|.++.+ .++.|.+++.|.+
T Consensus 353 ~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~ 432 (459)
T PRK14355 353 TKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTK 432 (459)
T ss_pred ccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcc
Confidence 333344333221 12456666666666554 3678888888899
Q ss_pred ccCCCcccC
Q 018060 353 SILKPEIVM 361 (361)
Q Consensus 353 ~~~~~~~~~ 361 (361)
+++++++++
T Consensus 433 ~v~~~~~~~ 441 (459)
T PRK14355 433 DVPPDSLAI 441 (459)
T ss_pred cCCCCcEEE
Confidence 999988753
No 143
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.44 E-value=9.8e-13 Score=94.04 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=62.6
Q ss_pred ECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeecc
Q 018060 275 VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSS 353 (361)
Q Consensus 275 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~ 353 (361)
||+++.|++++.|.++.|+++|.|+++++|++++|++++.|++++.+.+ +++++++.|++++.+.++.+.++..+...
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~-svi~~~~~i~~~~~v~~~ii~~~~~i~~~ 79 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN-CIIGNGAVIGEKCKLKDCLVGSGYRVEAG 79 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEec-cEEeCCCEECCCCEEccCEECCCcEeCCC
Confidence 5677777777777778888888888888888888888888888888876 88888888888888888888877777654
No 144
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.44 E-value=3e-12 Score=107.92 Aligned_cols=111 Identities=17% Similarity=0.242 Sum_probs=82.8
Q ss_pred ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec-cEEcCCCEECCCcEEc
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVE 322 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~ 322 (361)
+.....+.+.+.+++++.+++++.|+++++|+++++||++|.|. ++.|++++.||++|.|.. +++..++.||++|.|+
T Consensus 81 ~~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig 160 (197)
T cd03360 81 YRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIG 160 (197)
T ss_pred CccceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEEC
Confidence 45667778888899998899999888888898888888888886 778887788877777754 5666666666666666
Q ss_pred CceEECCCeEECCceEEcCcEEccCceeecccCCCccc
Q 018060 323 NMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 323 ~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~~~~~ 360 (361)
.++.|..++++++++ .+.++++|.+++++++++
T Consensus 161 ~~~~v~~~~~ig~~~-----~v~~~~~v~~~~~~~~~~ 193 (197)
T cd03360 161 AGATIIQGVTIGAGA-----IIGAGAVVTKDVPDGSVV 193 (197)
T ss_pred CCCEEcCCCEECCCC-----EECCCCEEcCCCCCCCEE
Confidence 555555555555544 556678888888888765
No 145
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.43 E-value=3.1e-12 Score=94.99 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=75.4
Q ss_pred cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCe
Q 018060 253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV 331 (361)
Q Consensus 253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~ 331 (361)
+++++++++.|++++.+.++++||++|.|++++.|. ++.|+++|.|+. .+.+++|++++.+++++.|.+ ++||+++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~-siIg~~v 86 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGH-SYLGSWC 86 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEee-eEECCCC
Confidence 578899999999999888889999999999999988 588899999964 678899999999999999986 9999999
Q ss_pred EECCceEEcC
Q 018060 332 HVCDEIYSNG 341 (361)
Q Consensus 332 ~v~~~~~i~~ 341 (361)
.|++++...+
T Consensus 87 ~ig~~~~~~~ 96 (101)
T cd05635 87 NLGAGTNNSD 96 (101)
T ss_pred EECCCceecc
Confidence 9999987754
No 146
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.1e-13 Score=118.62 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=83.1
Q ss_pred cEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEcc
Q 018060 267 CLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP 346 (361)
Q Consensus 267 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~ 346 (361)
+.++..+.++++|.|++++.|..|+||++|.||+.++|.+|+++++++||+++.|.+ |+||.+++||+++.+.+|.|+|
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~Ien-sIIg~gA~Ig~gs~L~nC~Ig~ 407 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIEN-SIIGMGAQIGSGSKLKNCIIGP 407 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceec-ceecccceecCCCeeeeeEecC
Confidence 456667899999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred Cceee-cccCCCc
Q 018060 347 HKEIK-SSILKPE 358 (361)
Q Consensus 347 ~~~v~-~~~~~~~ 358 (361)
+..|+ +..-.++
T Consensus 408 ~yvVeak~~~~~e 420 (433)
T KOG1462|consen 408 GYVVEAKGKHGGE 420 (433)
T ss_pred CcEEccccccccc
Confidence 99998 4444333
No 147
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.43 E-value=1.8e-12 Score=100.13 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=64.4
Q ss_pred EcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcC----------CCEECCCcEEcCce
Q 018060 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGW----------HSTVGQWARVENMT 325 (361)
Q Consensus 257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~----------~~~ig~~~~i~~~~ 325 (361)
|++++.|+++++|++++.||++|.|++++.|. ++.|+++|.|++++.+.++.+.. ++.||+++.|+.++
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~ 80 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANA 80 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCC
Confidence 45677777777777777777777777777775 67888888888888887654333 33344444444434
Q ss_pred EECCCeEECCceEEcCcEEccCceeecccCCCcccC
Q 018060 326 ILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 361 (361)
Q Consensus 326 ~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~~~~~~ 361 (361)
++.+++.+++ ++.+.+++.+.++++++++++
T Consensus 81 ~v~~~~~ig~-----~~~i~~~~~v~~~i~~~~~~~ 111 (119)
T cd03358 81 TILPGVTIGE-----YALVGAGAVVTKDVPPYALVV 111 (119)
T ss_pred EEeCCcEECC-----CCEEccCCEEeCcCCCCeEEe
Confidence 4433333333 455566677777888887763
No 148
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.43 E-value=2.5e-12 Score=108.89 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=70.1
Q ss_pred ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 323 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 323 (361)
+.....+.+++.++++++|++++.|+++++|++++.||++|.|. ++.|++++.|++++.|+ .++.++.++.+++
T Consensus 84 ~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~-----~~~~i~~~~~ig~ 158 (201)
T TIGR03570 84 YRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIA-----PGVTLSGGVVIGE 158 (201)
T ss_pred CcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEEC-----CCCEEeCCcEECC
Confidence 34445666777777777777777777777777777777777775 56666666666655554 3444444444444
Q ss_pred ceEECCCeEECCceEEc-CcEEccCceeecccCCCccc
Q 018060 324 MTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 324 ~~~ig~~~~v~~~~~i~-~~~i~~~~~v~~~~~~~~~~ 360 (361)
++.||.++.+.+++.+. ++.+.+++++.+++++++++
T Consensus 159 ~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~~~ 196 (201)
T TIGR03570 159 GVFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVV 196 (201)
T ss_pred CCEECCCCEEeCCCEECCCCEECCCCEECCcCCCCCEE
Confidence 44444455555555553 45566677778888888775
No 149
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.42 E-value=2.7e-12 Score=99.41 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=60.8
Q ss_pred cCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEec---------cEEcCCCEE
Q 018060 246 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTV 315 (361)
Q Consensus 246 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i 315 (361)
.+++.+...+.|++++.|.+++++..++.||++|.|.. +|. ++.|+++|.||+++.|.. ..||++|+|
T Consensus 5 ~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~I 82 (147)
T cd04649 5 ADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLL 82 (147)
T ss_pred cCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEE
Confidence 34555555555555555555555555555555555552 221 355666666666666652 468888888
Q ss_pred CCCcEEcCceEECCCeEECCceEEcCcEE
Q 018060 316 GQWARVENMTILGEDVHVCDEIYSNGGVV 344 (361)
Q Consensus 316 g~~~~i~~~~~ig~~~~v~~~~~i~~~~i 344 (361)
|.++.| +..||++++|++|+++...+.
T Consensus 83 G~ga~I--gv~IG~~~vIGaGsvV~k~t~ 109 (147)
T cd04649 83 GANSGI--GISLGDNCIVEAGLYVTAGTK 109 (147)
T ss_pred CCCCEE--eEEECCCCEECCCCEEeCCeE
Confidence 888888 488888888888887754443
No 150
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.42 E-value=1.5e-12 Score=124.25 Aligned_cols=118 Identities=20% Similarity=0.357 Sum_probs=73.9
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-ccEEcCC--------
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWH-------- 312 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~-------- 312 (361)
...+++++.|.+++.|++++.|+++|.|. +|.||++|.|++++.|.+|+|++++.|++++.|. ++.++++
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~ 349 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVE 349 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceecccee
Confidence 44566677777777777777777777773 6777777777777777666666666666666555 2333333
Q ss_pred --------------------------CEECCCcEEcC-------ceEECCCeEECCceEE-------cCcEEccCceeec
Q 018060 313 --------------------------STVGQWARVEN-------MTILGEDVHVCDEIYS-------NGGVVLPHKEIKS 352 (361)
Q Consensus 313 --------------------------~~ig~~~~i~~-------~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~ 352 (361)
|.||+++.+.+ +++||+++.||.++.+ .++.+.+++.|.+
T Consensus 350 i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~ 429 (456)
T PRK09451 350 MKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTR 429 (456)
T ss_pred eeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEcc
Confidence 33333332210 1445566666655554 3677788888888
Q ss_pred ccCCCccc
Q 018060 353 SILKPEIV 360 (361)
Q Consensus 353 ~~~~~~~~ 360 (361)
++++++++
T Consensus 430 ~v~~~~~~ 437 (456)
T PRK09451 430 DVAENELV 437 (456)
T ss_pred ccCCCCEE
Confidence 99888765
No 151
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.40 E-value=3.4e-12 Score=102.83 Aligned_cols=82 Identities=18% Similarity=0.121 Sum_probs=58.9
Q ss_pred EcCCCEECCCcEECCCcEECCCCEECCCcEEec----eEEccCcEECCCCEEec-----cEEcCCCEECCCcEEcCceEE
Q 018060 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTIL 327 (361)
Q Consensus 257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~i 327 (361)
+.+++.|+++++|.+++.||++|.|++++.|.. ..|+++|.|+++|.|.. ++||+++.|++++.+.+ ++|
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~I 81 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG-AKV 81 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC-cEE
Confidence 445555555555555666666666666666663 47888888888888875 67888888888888765 777
Q ss_pred CCCeEECCceEE
Q 018060 328 GEDVHVCDEIYS 339 (361)
Q Consensus 328 g~~~~v~~~~~i 339 (361)
|+++.|+.++.+
T Consensus 82 g~~~~Ig~~~~i 93 (154)
T cd04650 82 GNYVIVGMGAIL 93 (154)
T ss_pred CCCCEEcCCCEE
Confidence 777777777776
No 152
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.40 E-value=1.3e-11 Score=103.95 Aligned_cols=176 Identities=14% Similarity=0.209 Sum_probs=104.6
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCC-cchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFAN-KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g-~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
.+||||||+++||+. ||+|++++| +|||+|+++.+... +++++|+++.+ .. . ...++.....
T Consensus 10 ~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~--~~----~-----~~~~~v~d~~ 72 (196)
T PRK00560 10 PCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK--KF----E-----FNAPFLLEKE 72 (196)
T ss_pred eEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch--hc----c-----cCCcEEecCC
Confidence 589999999999965 999999999 99999999999877 88999888751 11 1 0223322212
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccC-HHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeEe
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 158 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~~-l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (361)
....|....+..+.... ..+.+++++||+ +...+ ++++.. +.+..+ +....+ ++
T Consensus 73 ~~~~gpl~gi~~~l~~~---~~~~vlv~~~D~P~i~~~~i~~l~~---~~~~~~---------------~~~~~~-~~-- 128 (196)
T PRK00560 73 SDLFSPLFGIINAFLTL---QTPEIFFISVDTPFVSFESIKKLCG---KENFSV---------------TYAKSP-TK-- 128 (196)
T ss_pred CCCCCcHHHHHHHHHhc---CCCeEEEEecCcCcCCHHHHHHHHh---cCCCCE---------------EEEccC-Cc--
Confidence 22345555555554433 234899999999 43433 455522 111111 111111 10
Q ss_pred eeeecCCCCCCCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEec--ceEEEcCCHHHHHHHHHH
Q 018060 159 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRL 232 (361)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~--~~~~~i~t~~dy~~a~~~ 232 (361)
...-+.+|++..+..+.....+ ...-+..++++..+..+.++ +.+.|++||+||.++.+.
T Consensus 129 -------------~~Pl~al~~~~~~~~l~~~l~~-~~~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~ 190 (196)
T PRK00560 129 -------------EHYLISLWHQSLLNALIYALKT-QNYRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQI 190 (196)
T ss_pred -------------eeeeEEEEcHHHHHHHHHHHHh-CCccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHH
Confidence 1122367888888776421100 00123444454444444443 467899999999877543
No 153
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.40 E-value=3.1e-12 Score=121.85 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=71.4
Q ss_pred EEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-ccEEcCCCEECCCcEEcCceEEC
Q 018060 250 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILG 328 (361)
Q Consensus 250 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~~~~ig 328 (361)
.+++.+.|++++.|+++++|++++.||++|+|+++++|.+++|+++|.||++++|. +++||++|.||+++.+.+ ++|+
T Consensus 264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~-~~i~ 342 (446)
T PRK14353 264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN-AKLG 342 (446)
T ss_pred EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEec-eEEC
Confidence 56778899999999999999999999999999999999999999999999999998 699999999999987754 4444
Q ss_pred CCeEE
Q 018060 329 EDVHV 333 (361)
Q Consensus 329 ~~~~v 333 (361)
+++.+
T Consensus 343 ~~~~i 347 (446)
T PRK14353 343 EGAKV 347 (446)
T ss_pred CCCEE
Confidence 44333
No 154
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.40 E-value=3.9e-12 Score=109.12 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCEECCCcEECCCcEECCCCEECCCcEEe-ceEEc--------cCcEECCCCEEec-cEEcCCCEECCCcEEcCceEECC
Q 018060 260 SAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM--------RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGE 329 (361)
Q Consensus 260 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~--------~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~ig~ 329 (361)
++.|+++|.|..+++||++|+||++|.|. ++.|+ +.+.|+++|.|+. ++|.+++.||+++.|+.+++|+.
T Consensus 129 ga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~ 208 (269)
T TIGR00965 129 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQ 208 (269)
T ss_pred CcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECC
Confidence 34445555444444445555555544443 22232 2234444444432 33344444444444444444444
Q ss_pred CeEEC
Q 018060 330 DVHVC 334 (361)
Q Consensus 330 ~~~v~ 334 (361)
+++|.
T Consensus 209 ~~~I~ 213 (269)
T TIGR00965 209 STKIY 213 (269)
T ss_pred CCEEe
Confidence 44444
No 155
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.40 E-value=5.8e-11 Score=100.68 Aligned_cols=207 Identities=16% Similarity=0.210 Sum_probs=119.1
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccCh-HHHHHHHHHhhhccCcEEEEec
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
.|||+|||.|+||+. ..||++++++|+|+|.|+++.|.+.. +++|+|++.++. +.+++.+.+ ..+.+..-
T Consensus 2 ~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----~~v~iv~G- 73 (221)
T PF01128_consen 2 AAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----KKVKIVEG- 73 (221)
T ss_dssp EEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----TTEEEEE--
T ss_pred EEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----CCEEEecC-
Confidence 589999999999987 78999999999999999999998864 899999999854 445554444 23443322
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV 157 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (361)
...-.++++.++..+.... +.+++.-+=- +. ...++++++..++. ..+.+.+.+..+ .+...+.+ +.+
T Consensus 74 ---G~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~D----Tik~v~~~-~~v 143 (221)
T PF01128_consen 74 ---GATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVTD----TIKRVDDD-GFV 143 (221)
T ss_dssp ----SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-SS----EEEEESTT-SBE
T ss_pred ---ChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEeccc----cEEEEecC-Ccc
Confidence 2233588999998886433 4666665554 33 33478888887662 234445455433 34445544 666
Q ss_pred eeeeecCCCCCCCeE-EEEEEEeCHhhHhhccCC----CCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHH
Q 018060 158 EKFVEKPKLFVGNKI-NAGIYLLNPAVLDRIELR----PTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLR 231 (361)
Q Consensus 158 ~~~~ek~~~~~~~~~-~~Giyi~~~~~l~~l~~~----~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~ 231 (361)
.+.... +.+. -=.=..|+.+.+...-++ ...+-.|. ..+.. ..++...+=+..-+-+.+|+|+.-+..
T Consensus 144 ~~tldR-----~~l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~tDda-sl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ 217 (221)
T PF01128_consen 144 TETLDR-----SKLWAVQTPQAFRFELLLEAYEKADEEGFEFTDDA-SLVEAAGKKVAIVEGSPRNIKITTPEDLELAEA 217 (221)
T ss_dssp EEEETG-----GGEEEEEEEEEEEHHHHHHHHHTHHHHTHHHSSHH-HHHHHTTS-EEEEE--TTG----SHHHHHHHHH
T ss_pred cccCCH-----HHeeeecCCCeecHHHHHHHHHHHHhcCCCccCHH-HHHHHcCCCEEEEeCCCCceeECCHHHHHHHHH
Confidence 665432 1221 112356666655433211 11221222 12222 334544444445667899999887765
Q ss_pred H
Q 018060 232 L 232 (361)
Q Consensus 232 ~ 232 (361)
.
T Consensus 218 l 218 (221)
T PF01128_consen 218 L 218 (221)
T ss_dssp H
T ss_pred H
Confidence 4
No 156
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.39 E-value=2.8e-12 Score=122.31 Aligned_cols=104 Identities=14% Similarity=0.297 Sum_probs=61.5
Q ss_pred EcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC-------ceEECC
Q 018060 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGE 329 (361)
Q Consensus 257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~ig~ 329 (361)
|++++.|+++|+|++++.||.+|+|++++.+.+++|++++.|++++.+++++|+++|.||.++.+.+ +++||+
T Consensus 316 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~ 395 (450)
T PRK14360 316 IGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGD 395 (450)
T ss_pred ccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCC
Confidence 3344444444444444444444444444444444555555555555555566777777777665532 466777
Q ss_pred CeEECCceEEc-------CcEEccCceeecccCCCccc
Q 018060 330 DVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 330 ~~~v~~~~~i~-------~~~i~~~~~v~~~~~~~~~~ 360 (361)
++.||.++.+. ++.+.+++.|.+++|+++++
T Consensus 396 ~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~ 433 (450)
T PRK14360 396 RSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLA 433 (450)
T ss_pred CeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEE
Confidence 77777666652 57778888888999998764
No 157
>PLN02472 uncharacterized protein
Probab=99.38 E-value=6e-12 Score=108.22 Aligned_cols=107 Identities=11% Similarity=0.159 Sum_probs=68.4
Q ss_pred EecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-----------ccEEcCCCEECCCc
Q 018060 251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-----------SSIIGWHSTVGQWA 319 (361)
Q Consensus 251 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----------~~~i~~~~~ig~~~ 319 (361)
+...++|.+++.+.+++.|++++.|+.+++|... .....||+++.|+++|+|+ +++||+++.||++|
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd--~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s 139 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGD--LNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYS 139 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEcCCCEEecC--CcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCc
Confidence 4444555555555444444444444444443332 1125788888888888884 47889999999998
Q ss_pred EEcCceEECCCeEECCceEEc-------CcEEccCceee--cccCCCccc
Q 018060 320 RVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV 360 (361)
Q Consensus 320 ~i~~~~~ig~~~~v~~~~~i~-------~~~i~~~~~v~--~~~~~~~~~ 360 (361)
.|.+ |+||+++.||.++++. ++.+.+++.+. ..++.++++
T Consensus 140 ~L~~-~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~ 188 (246)
T PLN02472 140 LLRS-CTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELW 188 (246)
T ss_pred EECC-eEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence 8875 8888888887777663 45666666666 466666654
No 158
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.38 E-value=5.5e-12 Score=101.86 Aligned_cols=83 Identities=23% Similarity=0.256 Sum_probs=60.3
Q ss_pred EcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEec-----cEEcCCCEECCCcEEcCceEE
Q 018060 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTIL 327 (361)
Q Consensus 257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~i 327 (361)
+++++.|+++++|.++++||++|.|+++++|. .++|++++.|+++|+|.+ ++|++++.|+.++.+.+ ++|
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~I 80 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG-CTI 80 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee-eEE
Confidence 34555555555555566666666666666665 358888999988888887 48899999988888876 778
Q ss_pred CCCeEECCceEEc
Q 018060 328 GEDVHVCDEIYSN 340 (361)
Q Consensus 328 g~~~~v~~~~~i~ 340 (361)
|+++.|++++.+.
T Consensus 81 g~~~~Ig~~~~v~ 93 (153)
T cd04645 81 GDNCLIGMGAIIL 93 (153)
T ss_pred CCCCEECCCCEEc
Confidence 8877777776664
No 159
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.37 E-value=8.3e-12 Score=102.19 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=45.8
Q ss_pred EEcCCCEECCCcEE----CCCcEECCCCEECCCcEEec-eEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCC
Q 018060 256 LVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGED 330 (361)
Q Consensus 256 ~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~ 330 (361)
.|++++.|++++.| +.++.||++|.|+.++.|.. +.|+++|.||.++.|.++.||+++.||.++.|.+ +.|+++
T Consensus 44 ~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~-~~i~~~ 122 (167)
T cd00710 44 IIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDG-VEIPPG 122 (167)
T ss_pred EECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeC-CEeCCC
Confidence 34444444444444 22344555555555555553 5666666666666666666666666666665543 555555
Q ss_pred eEECCceEEc
Q 018060 331 VHVCDEIYSN 340 (361)
Q Consensus 331 ~~v~~~~~i~ 340 (361)
.++++++.+.
T Consensus 123 ~~v~~~~~v~ 132 (167)
T cd00710 123 RYVPAGAVIT 132 (167)
T ss_pred CEECCCCEEc
Confidence 5555555543
No 160
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.37 E-value=3.6e-12 Score=105.19 Aligned_cols=63 Identities=35% Similarity=0.496 Sum_probs=38.9
Q ss_pred ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEe
Q 018060 243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS 305 (361)
Q Consensus 243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 305 (361)
..+++++.|++.+.|+++++||+.|+|++++.|+++++|++++.|. ++.||.++.|-+.+.|+
T Consensus 4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG 67 (260)
T COG1043 4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIG 67 (260)
T ss_pred cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccC
Confidence 3466677777777777777777777777666666666666666665 45555444444444333
No 161
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.37 E-value=5.6e-12 Score=89.73 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=64.2
Q ss_pred EECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC-cEEccCcee
Q 018060 274 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEI 350 (361)
Q Consensus 274 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i~~~~~v 350 (361)
+||+++.|++++.|.+++|+++|.|++++.|.+++|++++.|++++.+.+ ++|++++.|++++.+.+ +.+.+++.+
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~-svv~~~~~i~~~~~i~~~~~ig~~~~i 77 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD-SIIGDNAVIGENVRVVNLCIIGDDVVV 77 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEEC-CEECCCCEECCCCEEcCCeEECCCeEE
Confidence 36778888888888888889999999999999999999999999999987 88999999999988876 666666554
No 162
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.36 E-value=6.4e-12 Score=120.05 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=25.1
Q ss_pred eEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060 325 TILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 325 ~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~ 360 (361)
+.||+++++|.++.+ .++.+.|++.|.+++++++++
T Consensus 399 ~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~ 441 (456)
T PRK14356 399 TVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLA 441 (456)
T ss_pred CEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEE
Confidence 455555555555554 367788888899999988765
No 163
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.35 E-value=1.3e-10 Score=98.07 Aligned_cols=210 Identities=16% Similarity=0.219 Sum_probs=120.3
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEec
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
.+||||||.|+||+. ..||++++++|+||++|+|+.|.... +++|+|++++ ..+.+.++.. ...+-.+.++.
T Consensus 6 ~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v~ 79 (230)
T COG1211 6 SAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADKRVEVVK 79 (230)
T ss_pred EEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCCeEEEec
Confidence 599999999999999 89999999999999999999998886 8999999998 4444555542 11122333332
Q ss_pred CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCCeE
Q 018060 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV 157 (361)
Q Consensus 80 ~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (361)
. ...-.++++.++..+...+++.|++.-+-= +.. ..++++++.... ..+.+.+.+..+ .+...+.+ +.+
T Consensus 80 G--G~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~--~~aai~alpv~D----Tik~~~~~-~~i 150 (230)
T COG1211 80 G--GATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADK--YGAAILALPVTD----TLKRVDAD-GNI 150 (230)
T ss_pred C--CccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhcc--CCcEEEEeeccC----cEEEecCC-CCe
Confidence 2 223468899999888542343455544433 333 347888843332 335555555533 34444433 555
Q ss_pred eeeeecCCCCCCCeEE-EEEEEeCHhhHhhccC----CCCccccchHHhHHh-cCceEEEEecceEEEcCCHHHHHHHHH
Q 018060 158 EKFVEKPKLFVGNKIN-AGIYLLNPAVLDRIEL----RPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLR 231 (361)
Q Consensus 158 ~~~~ek~~~~~~~~~~-~Giyi~~~~~l~~l~~----~~~~~~~d~l~~l~~-~~~i~~~~~~~~~~~i~t~~dy~~a~~ 231 (361)
.+...... ++- =.=..|+.+.|...-. ...++-.|. ..+.. ..++..+.=+-+-+-+.+|+|+.-+..
T Consensus 151 ~~t~~R~~-----l~~~QTPQ~F~~~~L~~a~~~a~~~~~~~tDda-s~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~ 224 (230)
T COG1211 151 VETVDRSG-----LWAAQTPQAFRLELLKQALARAFAEGREITDDA-SAIEKAGGPVSLVEGSADNFKITTPEDLEIAEA 224 (230)
T ss_pred eeccChhh-----hhhhhCCccccHHHHHHHHHHHHhcCCCcCCHH-HHHHHcCCCeEEEecCcceeEecCHHHHHHHHH
Confidence 55433211 000 0002344444432211 111121221 11111 224444433346778899999887765
Q ss_pred H
Q 018060 232 L 232 (361)
Q Consensus 232 ~ 232 (361)
.
T Consensus 225 i 225 (230)
T COG1211 225 I 225 (230)
T ss_pred H
Confidence 3
No 164
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.34 E-value=1.2e-11 Score=118.70 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=48.9
Q ss_pred eceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC-------ceEECCCeEECCceEE-------cCcEEccCceeecc
Q 018060 288 SRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGEDVHVCDEIYS-------NGGVVLPHKEIKSS 353 (361)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~ 353 (361)
.+++|++++.|++.+.+.+++||++|.||.++.+.+ +++||++++||.++.+ .++.+++++.|.++
T Consensus 356 ~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~ 435 (482)
T PRK14352 356 KNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIRED 435 (482)
T ss_pred cccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCC
Confidence 344455555555555555667777777777766642 3677777777777665 36777888888888
Q ss_pred cCCCccc
Q 018060 354 ILKPEIV 360 (361)
Q Consensus 354 ~~~~~~~ 360 (361)
++++++.
T Consensus 436 v~~~~~~ 442 (482)
T PRK14352 436 VPPGALA 442 (482)
T ss_pred CCCCcEE
Confidence 8887753
No 165
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.33 E-value=1.6e-11 Score=106.48 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=69.4
Q ss_pred cCCcEEecceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEeceEEccCcEECC---CCEEeccEEcCCCEECCCcE
Q 018060 246 ATGANIVGNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWAR 320 (361)
Q Consensus 246 ~~~~~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~ig~~~~ 320 (361)
.....+..++.|+++++||++++|+. +.+||++|+||++|.| +++++||. ++.....+||+++.||.+|+
T Consensus 133 ~~~~~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~ 207 (273)
T PRK11132 133 QNQISVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAK 207 (273)
T ss_pred hhcceeeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCE
Confidence 34455566777777777777777763 3466666666666555 56666663 22334579999999999999
Q ss_pred EcCceEECCCeEECCceEEcCcEEccCcee
Q 018060 321 VENMTILGEDVHVCDEIYSNGGVVLPHKEI 350 (361)
Q Consensus 321 i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v 350 (361)
|.+++.||++++||+++++.. -|-+++++
T Consensus 208 Ilggv~IG~~a~IGAgSvV~~-dVp~~~~v 236 (273)
T PRK11132 208 ILGNIEVGRGAKIGAGSVVLQ-PVPPHTTA 236 (273)
T ss_pred EcCCCEECCCCEECCCCEECc-ccCCCcEE
Confidence 999999999999999999864 24444443
No 166
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.33 E-value=1.2e-11 Score=88.11 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=65.7
Q ss_pred EECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEc-CcEEccCcee
Q 018060 274 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI 350 (361)
Q Consensus 274 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~-~~~i~~~~~v 350 (361)
+||++++|++++.|.++.|+++|.|+++++|.+++|++++.|++++.|.+ ++|++++.|++++.+. ++.+.+++.+
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~v~~~~~i 77 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIGKGCTIPPGSLISFGVVI 77 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEECCCCEECCCCEEeCCcEe
Confidence 36788888888888889999999999999999999999999999999986 9999999999998886 4566665544
No 167
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.33 E-value=1.5e-11 Score=117.56 Aligned_cols=104 Identities=14% Similarity=0.265 Sum_probs=60.1
Q ss_pred EcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC-------ceEECC
Q 018060 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGE 329 (361)
Q Consensus 257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~ig~ 329 (361)
|++++.|+++|.|.+++.||++|+|++++.|.++.|++++.+++.+.+++++||+++.||.++.+.+ .+.||+
T Consensus 319 ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd 398 (458)
T PRK14354 319 VGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGD 398 (458)
T ss_pred ECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECC
Confidence 3334444444444444444444444444444455555555555555555556666666666554422 255666
Q ss_pred CeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060 330 DVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 330 ~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~ 360 (361)
++.+|.++.+ .++.+++++.|.+++|+++++
T Consensus 399 ~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~ 436 (458)
T PRK14354 399 NAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALA 436 (458)
T ss_pred CcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEE
Confidence 6666666654 367788889999999998775
No 168
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.32 E-value=4.3e-11 Score=101.72 Aligned_cols=29 Identities=14% Similarity=0.364 Sum_probs=12.7
Q ss_pred EEcCCCEECCCcEEcCceEECCCeEECCc
Q 018060 308 IIGWHSTVGQWARVENMTILGEDVHVCDE 336 (361)
Q Consensus 308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~ 336 (361)
.|++++.|++++.|..++.+|+++.++.+
T Consensus 116 ~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~ 144 (205)
T cd03352 116 VIGDGTKIDNLVQIAHNVRIGENCLIAAQ 144 (205)
T ss_pred EECCCCEECCceEEeCCCEECCCCEECCC
Confidence 34444444444444444444444444433
No 169
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.31 E-value=1.5e-11 Score=117.72 Aligned_cols=97 Identities=18% Similarity=0.324 Sum_probs=74.2
Q ss_pred cccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-ccEEcCCCEECCCcE
Q 018060 242 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWAR 320 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~ 320 (361)
...+.+++.|.+++.|++++.|+++|+| .+|+||++|.|++++.|.+++|++++.|++++.+. ++.|++++.|++++.
T Consensus 276 ~~~I~~~~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~ 354 (481)
T PRK14358 276 DVTIEPGVLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVE 354 (481)
T ss_pred CCEEeCCcEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEE
Confidence 3456667777777778888888888888 57889999999999999999999999999999987 478888888888766
Q ss_pred EcC----------------ceEECCCeEECCceEE
Q 018060 321 VEN----------------MTILGEDVHVCDEIYS 339 (361)
Q Consensus 321 i~~----------------~~~ig~~~~v~~~~~i 339 (361)
|.+ .++||+++.||+++.+
T Consensus 355 i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i 389 (481)
T PRK14358 355 TKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIV 389 (481)
T ss_pred ECCceecCCcccCceEEECCeEEcCCceEcCCEEE
Confidence 532 2555556666555554
No 170
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.31 E-value=1.3e-11 Score=117.63 Aligned_cols=57 Identities=11% Similarity=0.170 Sum_probs=36.3
Q ss_pred EeccEEcCCCEECCCcEEc-------CceEECCCeEECCceEE-------cCcEEccCceeecccCCCccc
Q 018060 304 ISSSIIGWHSTVGQWARVE-------NMTILGEDVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 304 i~~~~i~~~~~ig~~~~i~-------~~~~ig~~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~ 360 (361)
+++++||+++.||+++.+. .+++||+++.||.++.+ .++.+++++.|.+++++++++
T Consensus 356 ~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~ 426 (448)
T PRK14357 356 LGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLA 426 (448)
T ss_pred ccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEE
Confidence 3344556666666555432 13566666666666554 367778888888888888764
No 171
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.31 E-value=3.5e-11 Score=90.17 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=70.8
Q ss_pred cccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060 244 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 323 (361)
Q Consensus 244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 323 (361)
.+.+++.+ .++.|++++.|+ ++.| .+|+++++|.|+++++|.+|+|++++.|++++++.+++|++++.|++++.+.+
T Consensus 3 ~i~~~~~i-~~s~Ig~~~~I~-~~~I-~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 3 YIGRRGEV-KNSLVSEGCIIS-GGTV-ENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred eecCCCEE-EeEEECCCCEEc-CeEE-EeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence 45677777 468899999998 8989 59999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 018060 324 M 324 (361)
Q Consensus 324 ~ 324 (361)
.
T Consensus 80 ~ 80 (104)
T cd04651 80 D 80 (104)
T ss_pred C
Confidence 4
No 172
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.30 E-value=1.2e-10 Score=97.38 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=71.0
Q ss_pred cceEEcCCCEECCCcEE----CCCcEECCCCEECCCcEEe---ceEEccCcEECCCCEEec-------------------
Q 018060 253 GNVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISS------------------- 306 (361)
Q Consensus 253 ~~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~------------------- 306 (361)
.+..+|+++.++.+|++ .+...||++|.|++++.|. ++.||++|.|++++.|.+
T Consensus 42 ~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~ 121 (192)
T PRK09677 42 GSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPP 121 (192)
T ss_pred CeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccCh
Confidence 45556777777777766 3456777777777777775 567788888887777753
Q ss_pred ---------cEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCcee
Q 018060 307 ---------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 350 (361)
Q Consensus 307 ---------~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v 350 (361)
.+|++++.||.++.|.++++||+++.|++++++... +.+++.+
T Consensus 122 ~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~-i~~~~~~ 173 (192)
T PRK09677 122 DMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS-IPENTVI 173 (192)
T ss_pred hhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc-cCCCcEE
Confidence 468899999999998888999999999999988752 4344333
No 173
>PLN02694 serine O-acetyltransferase
Probab=99.29 E-value=1.9e-11 Score=105.97 Aligned_cols=85 Identities=22% Similarity=0.236 Sum_probs=59.2
Q ss_pred ceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEec-eEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCC
Q 018060 254 NVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGED 330 (361)
Q Consensus 254 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~ 330 (361)
++.|++++.||++++|.. +++||++|+||++|.|.+ +.++. + +..+..++++||+++.||.+++|.++++||++
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg-~--g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG-T--GKACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCC-c--ccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 455666666666666643 566666666666666542 22222 1 33455667899999999999999888999999
Q ss_pred eEECCceEEcC
Q 018060 331 VHVCDEIYSNG 341 (361)
Q Consensus 331 ~~v~~~~~i~~ 341 (361)
++|++++++..
T Consensus 237 a~IGAgSVV~k 247 (294)
T PLN02694 237 AKIGAGSVVLI 247 (294)
T ss_pred CEECCCCEECC
Confidence 99999999864
No 174
>PRK10502 putative acyl transferase; Provisional
Probab=99.29 E-value=3e-11 Score=100.09 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=47.0
Q ss_pred cEECCCCEECCCcEEe---ceEEccCcEECCCCEEe----------------ccEEcCCCEECCCcEEcCceEECCCeEE
Q 018060 273 VAVGPGCVVESGVRLS---RCTVMRGVRIKKHACIS----------------SSIIGWHSTVGQWARVENMTILGEDVHV 333 (361)
Q Consensus 273 ~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~----------------~~~i~~~~~ig~~~~i~~~~~ig~~~~v 333 (361)
..||++|.|++++.|. ++.|+++|.|++++.|. +.+||+++.||.++.|.+++.||++++|
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vI 151 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVV 151 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEE
Confidence 3444444444444443 34566666666665552 3478999999999999888999999999
Q ss_pred CCceEEcC
Q 018060 334 CDEIYSNG 341 (361)
Q Consensus 334 ~~~~~i~~ 341 (361)
++++++..
T Consensus 152 ga~svV~~ 159 (182)
T PRK10502 152 GARSSVFK 159 (182)
T ss_pred CCCCEEec
Confidence 98888754
No 175
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.28 E-value=9e-11 Score=101.64 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=68.1
Q ss_pred ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCE-ECCCcE---Ee-ceEEccCcEECCCCEEec---------cEEc
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV-VESGVR---LS-RCTVMRGVRIKKHACISS---------SIIG 310 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i~~---------~~i~ 310 (361)
++.++.|.+.++|.+++.|+++++|.++++|+.++. +|+++. |. .++|+++|.||.+|.|.. +.||
T Consensus 175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IG 254 (341)
T TIGR03536 175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVG 254 (341)
T ss_pred ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEEC
Confidence 456777777777777777777777777777777776 666555 44 567777777777777742 3677
Q ss_pred CCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 311 WHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 311 ~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
++|.||.++.| +..||++++|++|+++..
T Consensus 255 e~~lIGagA~I--GI~IGd~~iIGAGavVta 283 (341)
T TIGR03536 255 EGCLLGANAGI--GIPLGDRCTVEAGLYITA 283 (341)
T ss_pred CCcEECCCCEE--eeEECCCCEECCCCEEeC
Confidence 78888888887 588888888888887743
No 176
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.28 E-value=3.6e-11 Score=89.30 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=66.2
Q ss_pred ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEc
Q 018060 243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 322 (361)
Q Consensus 243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~ 322 (361)
..+.+++.+.++++|++++.|++++.|.++++||++|+|+. .|.+|+|++++.++++++|.+++|++++.||+++...
T Consensus 18 ~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~ 95 (101)
T cd05635 18 AVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNS 95 (101)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceec
Confidence 34566677777888888888888888888888888888876 5789999999999999999999999999999988776
Q ss_pred C
Q 018060 323 N 323 (361)
Q Consensus 323 ~ 323 (361)
+
T Consensus 96 ~ 96 (101)
T cd05635 96 D 96 (101)
T ss_pred c
Confidence 5
No 177
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.28 E-value=8e-11 Score=106.67 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=77.3
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET 81 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 81 (361)
.+||||||+|+||+. +|+|+++.|+||++|+++.+... +.+++|+++... .. ... ..++.+... ..
T Consensus 162 ~~IILAGGkSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~~~----~~~v~~I~D-~~ 227 (346)
T PRK14500 162 YGLVLTGGKSRRMGK-----DKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-GTP----LENLPTLPD-RG 227 (346)
T ss_pred eEEEEeccccccCCC-----CcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchH--hh-hcc----ccCCeEEeC-CC
Confidence 589999999999965 99999999999999999998765 789988886532 11 100 002333322 23
Q ss_pred CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eecc-CHHHHHHHH
Q 018060 82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFH 125 (361)
Q Consensus 82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~~-~l~~~~~~~ 125 (361)
...|...+++.+..... .+ .+++++||+ +... .+..+++.+
T Consensus 228 ~~~GPlagI~aaL~~~~--~~-~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 228 ESVGPISGILTALQSYP--GV-NWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCCChHHHHHHHHHhCC--CC-CEEEEECCcCCCCHHHHHHHHHhh
Confidence 34699999999998763 22 789999999 4443 367777765
No 178
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.28 E-value=9.3e-11 Score=108.32 Aligned_cols=107 Identities=20% Similarity=0.370 Sum_probs=76.4
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecC
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
|.+||||||+|+||+. +|+|++++|+|||+|+++.+... +++++|+++.... . .+.. .++.++...
T Consensus 175 i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~~--~-~~~~----~~v~~i~d~- 240 (369)
T PRK14490 175 LSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQA--E-QYRS----FGIPLITDS- 240 (369)
T ss_pred ceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCchh--h-HHhh----cCCcEEeCC-
Confidence 3589999999999965 99999999999999999999865 7888887766421 1 1121 245554332
Q ss_pred CCCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHH
Q 018060 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEF 124 (361)
Q Consensus 81 ~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~ 124 (361)
....|...++..+..... .+.+++++||+ +.. ..++.+++.
T Consensus 241 ~~~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 241 YLDIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CCCCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 234577888888776552 23799999999 334 346667664
No 179
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.28 E-value=4.5e-11 Score=97.05 Aligned_cols=95 Identities=22% Similarity=0.340 Sum_probs=60.0
Q ss_pred EEecceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEeceEEccCcEECCC---CEEeccEEcCCCEECCCcEEcCc
Q 018060 250 NIVGNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKH---ACISSSIIGWHSTVGQWARVENM 324 (361)
Q Consensus 250 ~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~---~~i~~~~i~~~~~ig~~~~i~~~ 324 (361)
.+..++.|++++.|+++++|+. +++|+++|+||++|.| +++|+|+.. .....++||+++.||.+++|.++
T Consensus 57 ~~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I-----~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~ 131 (162)
T TIGR01172 57 RVLTGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGN 131 (162)
T ss_pred heeeCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccccCCcCCEECCCcEEcCCCEEECC
Confidence 3444555555555555555542 2455555555555554 333333322 11345789999999999999998
Q ss_pred eEECCCeEECCceEEcCcEEccCcee
Q 018060 325 TILGEDVHVCDEIYSNGGVVLPHKEI 350 (361)
Q Consensus 325 ~~ig~~~~v~~~~~i~~~~i~~~~~v 350 (361)
++||+++.|++++++... +-+++++
T Consensus 132 v~IG~~~~Iga~s~V~~d-vp~~~~~ 156 (162)
T TIGR01172 132 IEVGENAKIGANSVVLKD-VPPGATV 156 (162)
T ss_pred cEECCCCEECCCCEECCC-CCCCCEE
Confidence 999999999999988752 4444444
No 180
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.25 E-value=6.3e-11 Score=102.77 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=36.7
Q ss_pred cCCCEECCCcEECCCcEECCCCEECCCcEEe-ceEEcc--------CcEECCCCEEec-cEEcCCCEECCCcEEcCceEE
Q 018060 258 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR--------GVRIKKHACISS-SIIGWHSTVGQWARVENMTIL 327 (361)
Q Consensus 258 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~--------~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i 327 (361)
+.++.|++++.|+.++.||++|.||++|.|. ++.|+. .+.|+++|.|+. ++|..++.||+++.|+++++|
T Consensus 130 ~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV 209 (272)
T PRK11830 130 NIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFL 209 (272)
T ss_pred CCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence 3344455555555445555555555555544 222221 244444444443 444455555555555555555
Q ss_pred CCCeEEC
Q 018060 328 GEDVHVC 334 (361)
Q Consensus 328 g~~~~v~ 334 (361)
+.++.|+
T Consensus 210 ~~gt~I~ 216 (272)
T PRK11830 210 GQSTKIY 216 (272)
T ss_pred cCCeEEC
Confidence 5555555
No 181
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.24 E-value=1e-10 Score=97.71 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=31.0
Q ss_pred cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
.+||++++||.++.|.+++.||++++|++++++..
T Consensus 132 i~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 57899999999999998899999999999998865
No 182
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.23 E-value=7.2e-11 Score=110.10 Aligned_cols=94 Identities=21% Similarity=0.310 Sum_probs=78.1
Q ss_pred ccCCcEEecceEEcCCCEECCCcEEC---CCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEE
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 321 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i 321 (361)
+...++|++++.| .++.|+++|+|+ .+|+||++|+|+++|+|.+|+|+++|.|+++|+|.+|+|++++.|++++.+
T Consensus 279 ~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i 357 (380)
T PRK05293 279 NLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVII 357 (380)
T ss_pred CCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEE
Confidence 3344555555555 345666666664 378999999999999999999999999999999999999999999999999
Q ss_pred cCc----eEECCCeEECCceEE
Q 018060 322 ENM----TILGEDVHVCDEIYS 339 (361)
Q Consensus 322 ~~~----~~ig~~~~v~~~~~i 339 (361)
.++ .+||+++.|+++++|
T Consensus 358 ~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 358 GGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred cCCCceeEEEeCCCCCCCCcEe
Confidence 885 778999888888776
No 183
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.22 E-value=1.7e-10 Score=86.24 Aligned_cols=82 Identities=20% Similarity=0.370 Sum_probs=61.4
Q ss_pred eEEcCCCEECCCcEECC--CcEECCCCEECCCcEEeceEEccCcEECCCCE---EeccEEcCCCEECCCcEEcCceEECC
Q 018060 255 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILGE 329 (361)
Q Consensus 255 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~~ig~ 329 (361)
+.|+++++|+++++|+. +++|++++.||++|.| ++++.|++++. +++++|++++.|+.++.+.+++.||+
T Consensus 3 ~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~ 77 (101)
T cd03354 3 IDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGD 77 (101)
T ss_pred eEeCCCCEECCCEEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECC
Confidence 45666666666666654 4456666666666554 56677777765 67789999999999999998899999
Q ss_pred CeEECCceEEcC
Q 018060 330 DVHVCDEIYSNG 341 (361)
Q Consensus 330 ~~~v~~~~~i~~ 341 (361)
++.+++++.+..
T Consensus 78 ~~~i~~~~~i~~ 89 (101)
T cd03354 78 NVKIGANAVVTK 89 (101)
T ss_pred CCEECCCCEECc
Confidence 999999998875
No 184
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.22 E-value=2.2e-10 Score=93.14 Aligned_cols=95 Identities=17% Similarity=0.273 Sum_probs=64.2
Q ss_pred cccccCCcEEecc---eEEcCCCEECCCcEECC------------CcEECCCCEECCCcEEeceEEccCcEECCCCEEec
Q 018060 242 SLKLATGANIVGN---VLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS 306 (361)
Q Consensus 242 ~~~~~~~~~i~~~---~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 306 (361)
...+++++.+.++ +.||+++.|+++|+|.+ ++.||+++.|++++.+.++.|++++.|++++.|.
T Consensus 27 ~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig- 105 (161)
T cd03359 27 KTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIG- 105 (161)
T ss_pred ceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEc-
Confidence 3445666666654 57888888888887764 3478888888888888777777777777766554
Q ss_pred cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+++.|++++.|..+++|..++++++.+++.+
T Consensus 106 ----~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g 136 (161)
T cd03359 106 ----RRCIIKDCVKILDGTVVPPDTVIPPYSVVSG 136 (161)
T ss_pred ----CCCEECCCcEECCCCEECCCCEeCCCCEEec
Confidence 4555555555555566666666666666654
No 185
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.21 E-value=1.7e-10 Score=95.29 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=52.2
Q ss_pred ECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEe-------------------ccEEcCCCEECCCcEEcC
Q 018060 263 IGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-------------------SSIIGWHSTVGQWARVEN 323 (361)
Q Consensus 263 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~ig~~~~i~~ 323 (361)
+|.++.||++++|+.+|+|++.+.| .||++|.|++++.|. +.+||++++||.++.|.+
T Consensus 70 ~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~ 146 (183)
T PRK10092 70 YGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINP 146 (183)
T ss_pred ecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECC
Confidence 4555555555555555655555443 456666666666653 357888888888888888
Q ss_pred ceEECCCeEECCceEEcC
Q 018060 324 MTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 324 ~~~ig~~~~v~~~~~i~~ 341 (361)
++.||++++|++++++..
T Consensus 147 gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 147 GVTIGDNVVVASGAVVTK 164 (183)
T ss_pred CCEECCCCEECCCCEEcc
Confidence 888888888888888764
No 186
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.19 E-value=1.5e-10 Score=82.39 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=25.5
Q ss_pred EEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 291 TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+|+++|.|+++++|.++++++++.|++++.+.+ +++++++.+++++.+.+
T Consensus 19 ~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~-sii~~~~~v~~~~~~~~ 68 (80)
T cd05824 19 VIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS-SIVGWNSTVGRWTRLEN 68 (80)
T ss_pred EECCCCEECCCcEEeeeEEcCCCEECCCCEEeC-CEEeCCCEECCCcEEec
Confidence 344445555555555555555555555555554 55555555555554443
No 187
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.19 E-value=1.3e-10 Score=110.24 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=69.2
Q ss_pred EEcCCCEECCCcEECCCcEECCCC----------EECCCcEEeceEEccCcEECCCCEEe--------ccEEcCCCEECC
Q 018060 256 LVHESAQIGEGCLIGPDVAVGPGC----------VVESGVRLSRCTVMRGVRIKKHACIS--------SSIIGWHSTVGQ 317 (361)
Q Consensus 256 ~i~~~~~i~~~~~i~~~~~ig~~~----------~i~~~~~i~~~~i~~~~~i~~~~~i~--------~~~i~~~~~ig~ 317 (361)
.|++++.|+++++| ++|.||++| +||..+.|.+|.|+++|.||.++.+. +++||+++.||.
T Consensus 300 ~ig~~~~i~~~~~i-~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~ 378 (430)
T PRK14359 300 DVGPLAHIRPKSEI-KNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGS 378 (430)
T ss_pred EECCCCEECCCcEE-eccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcC
Confidence 34444444444444 244455444 55555667788899999999998886 368999999999
Q ss_pred CcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060 318 WARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS 352 (361)
Q Consensus 318 ~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~ 352 (361)
++.|.+++.||++++|++++.+.+. +-+++.+..
T Consensus 379 ~~~i~~~~~ig~~~~i~~g~~v~~~-v~~~~~~~~ 412 (430)
T PRK14359 379 DTQLVAPVNIEDNVLIAAGSTVTKD-VPKGSLAIS 412 (430)
T ss_pred CCEEeCCcEECCCCEECCCCEEccc-cCCCcEEEe
Confidence 9999999999999999999998652 445555544
No 188
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.18 E-value=2.8e-10 Score=86.36 Aligned_cols=94 Identities=17% Similarity=0.258 Sum_probs=68.5
Q ss_pred ceEEcCCCEECCCcEECC--CcEECCCCEECCCcEEece---EEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEEC
Q 018060 254 NVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRC---TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILG 328 (361)
Q Consensus 254 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~---~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig 328 (361)
++.|+++++|++++.|.+ ++.||++|.|+++|.|.++ .+..++.+.......+++|++++.|++++.+.+++.|+
T Consensus 1 ~v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig 80 (109)
T cd04647 1 NISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIG 80 (109)
T ss_pred CeEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEEC
Confidence 356777777777777766 7888888888888888743 34444444445556678888899998888888778889
Q ss_pred CCeEECCceEEcCcEEccCc
Q 018060 329 EDVHVCDEIYSNGGVVLPHK 348 (361)
Q Consensus 329 ~~~~v~~~~~i~~~~i~~~~ 348 (361)
+++.+++++.+.. .+.++.
T Consensus 81 ~~~~i~~~~~v~~-~i~~~~ 99 (109)
T cd04647 81 DGAVVGAGSVVTK-DVPPNS 99 (109)
T ss_pred CCCEECCCCEEee-ECCCCC
Confidence 9988888888873 333333
No 189
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.17 E-value=2.9e-10 Score=97.99 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=71.1
Q ss_pred ccccCCcEEecceEEcCCCEECCCcEECCCc-EECCCCEECCCcEEe-ceEEccCcEECCCCEEec---------cEEcC
Q 018060 243 LKLATGANIVGNVLVHESAQIGEGCLIGPDV-AVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGW 311 (361)
Q Consensus 243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~-~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~ 311 (361)
..+.++..+.-+++|++++.|.++++|..++ +||.. .| +++|. +|+|++++.|+.++.|.+ ..||+
T Consensus 154 VRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe 230 (319)
T TIGR03535 154 VRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGE 230 (319)
T ss_pred cEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECC
Confidence 3455666666777777777777777777677 57775 45 45666 577888888888888544 58999
Q ss_pred CCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 312 HSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 312 ~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+|.||.+|.| +..||++|+||+|+++..
T Consensus 231 ~~~IGagA~I--GI~IGd~~VVGAGaVVtk 258 (319)
T TIGR03535 231 RCLLGANSGL--GISLGDDCVVEAGLYVTA 258 (319)
T ss_pred CcEECCCCEE--CeEECCCCEECCCCEEeC
Confidence 9999999999 599999999999998853
No 190
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.16 E-value=2.7e-10 Score=98.71 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=10.3
Q ss_pred CCcEECCCCEECCCcEE
Q 018060 271 PDVAVGPGCVVESGVRL 287 (361)
Q Consensus 271 ~~~~ig~~~~i~~~~~i 287 (361)
.+++||++|.||++|.|
T Consensus 223 sGavIGhds~IG~gasI 239 (341)
T TIGR03536 223 AGVMVGKGSDLGGGCST 239 (341)
T ss_pred cCCEECCCCEECCCCEE
Confidence 44556666666666666
No 191
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.16 E-value=4.2e-10 Score=92.28 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=35.5
Q ss_pred ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060 306 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS 352 (361)
Q Consensus 306 ~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~ 352 (361)
+.+||++|+||.++.|.+++.||++++||+++++.+. +.+++.+.+
T Consensus 118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~-vp~~~vv~G 163 (169)
T cd03357 118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD-IPANVVAAG 163 (169)
T ss_pred CcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc-cCCCcEEEc
Confidence 4688889999999998888999999999999988763 444444433
No 192
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.16 E-value=2.2e-10 Score=81.13 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=49.0
Q ss_pred EEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECC
Q 018060 256 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 335 (361)
Q Consensus 256 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~ 335 (361)
.|++++.|+++++|++++.||++|.|++++.|.+..... ...+..|++++.++.++.+.+++.||+++++++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~ 73 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGA 73 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCCCEECCCCEECc
Confidence 466666666666666667777777777777666443221 223356677777777777766677777777777
Q ss_pred ceEE
Q 018060 336 EIYS 339 (361)
Q Consensus 336 ~~~i 339 (361)
++.+
T Consensus 74 ~s~v 77 (78)
T cd00208 74 GAVV 77 (78)
T ss_pred CcEe
Confidence 6654
No 193
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.16 E-value=2e-11 Score=106.96 Aligned_cols=157 Identities=19% Similarity=0.245 Sum_probs=93.3
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc--------CCCEEEEEcccChHHHHHHHHHhhhc
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------GVTEVVLAINYQPEVMLNFLKEFEAK 70 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~--------gi~~i~vv~~~~~~~~~~~l~~~~~~ 70 (361)
-+|+||||.|+||+. ..||+|+|++ |+|+|++.++++.+. ++..+++.+....+.+++++++....
T Consensus 2 a~viLaGG~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~ 78 (266)
T cd04180 2 AVVLLAGGLGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQK 78 (266)
T ss_pred EEEEECCCCccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCC
Confidence 479999999999974 8999999999 999999999999862 35555555555678899999985412
Q ss_pred cCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHHcCCceEEE------EEEccCCCC
Q 018060 71 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIM------VTKVDEPSK 144 (361)
Q Consensus 71 ~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~------~~~~~~~~~ 144 (361)
.+..+.+.....+..+.+......+. ...+....-+||++.......+++.|.+++.....+ .....+|..
T Consensus 79 ~~~v~~f~Q~~~P~~~~~~~~~~~~~---~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~ 155 (266)
T cd04180 79 NSYVITFMQGKLPLKNDDDARDPHNK---TKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLF 155 (266)
T ss_pred CCceEEEEeCCceEEeCCCCcccCCC---CceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHH
Confidence 22222233333343443333211111 111134555666666555566667666666542221 122234555
Q ss_pred ceeEEEcCCCCeEeeeeecCC
Q 018060 145 YGVVVMEESTGKVEKFVEKPK 165 (361)
Q Consensus 145 ~~~v~~~~~~~~v~~~~ek~~ 165 (361)
+|++..++. .....+.+|+.
T Consensus 156 lG~~~~~~~-~~~~kvv~K~~ 175 (266)
T cd04180 156 IGIAIQNRK-AINQKVVPKTR 175 (266)
T ss_pred HHHHHHcCC-CEEEEEEECCC
Confidence 555554443 56666666643
No 194
>PRK10191 putative acyl transferase; Provisional
Probab=99.15 E-value=3.6e-10 Score=89.29 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=27.7
Q ss_pred cEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 307 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 307 ~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+.||+++.||.++.+.+++.||+++.+++++.+.+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~ 127 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVVLD 127 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 47788888888888877788888888888887765
No 195
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.15 E-value=4.7e-10 Score=87.06 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=26.5
Q ss_pred cccCCcEEecceEEcCCCEECCCcEEC----CCcEECCCCEECCCcEEe
Q 018060 244 KLATGANIVGNVLVHESAQIGEGCLIG----PDVAVGPGCVVESGVRLS 288 (361)
Q Consensus 244 ~~~~~~~i~~~~~i~~~~~i~~~~~i~----~~~~ig~~~~i~~~~~i~ 288 (361)
.+.+++.+.+.+++..++.|+++|.|. .+++||++|.|+++|.|.
T Consensus 15 ~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 15 YLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred EECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE
Confidence 345555555555555566666666555 556666666666666665
No 196
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.14 E-value=2.2e-10 Score=92.41 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=57.0
Q ss_pred cceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEeceEEccCcEECCCCE---EeccEEcCCCEECCCcEEcCceEE
Q 018060 253 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTIL 327 (361)
Q Consensus 253 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~~i 327 (361)
.++.|+|+|+||++.+|. .+.+||+.++||++|.| .+++++|.... -+.-+||+++.||++++|.+...|
T Consensus 66 ~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I-----~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~I 140 (194)
T COG1045 66 FGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEI 140 (194)
T ss_pred cceeeCCCCeECCceEEcCCceEEEcceeEECCCeEE-----EcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEE
Confidence 344555555555555554 23456666666665554 56666654322 223589999999999999888999
Q ss_pred CCCeEECCceEEcC
Q 018060 328 GEDVHVCDEIYSNG 341 (361)
Q Consensus 328 g~~~~v~~~~~i~~ 341 (361)
|+|++||+++++..
T Consensus 141 Gd~akIGA~sVVlk 154 (194)
T COG1045 141 GDNAKIGAGSVVLK 154 (194)
T ss_pred CCCCEECCCceEcc
Confidence 99999999999853
No 197
>PLN02357 serine acetyltransferase
Probab=99.14 E-value=3.4e-10 Score=101.04 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=27.5
Q ss_pred eccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 305 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 305 ~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
++++||+++.||.++.|.++++||++++||+++++..
T Consensus 277 ~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~ 313 (360)
T PLN02357 277 RHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLK 313 (360)
T ss_pred cCceeCCCeEECCceEEECCeEECCCCEECCCCEECc
Confidence 4567777778888777776777888888887777753
No 198
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=2.5e-10 Score=102.28 Aligned_cols=105 Identities=18% Similarity=0.312 Sum_probs=65.1
Q ss_pred EcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC-------ceEECC
Q 018060 257 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGE 329 (361)
Q Consensus 257 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~ig~ 329 (361)
|+.++.|||.++++|++.|+++++||.+|+++++.|++++.+++-++|+++.||.++.||.++..-+ .++||+
T Consensus 323 vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd 402 (460)
T COG1207 323 VGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGD 402 (460)
T ss_pred ecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecC
Confidence 3334444444444444444444444444444444444444444444555555555555555554432 589999
Q ss_pred CeEECCceEE-------cCcEEccCceeecccCCCcccC
Q 018060 330 DVHVCDEIYS-------NGGVVLPHKEIKSSILKPEIVM 361 (361)
Q Consensus 330 ~~~v~~~~~i-------~~~~i~~~~~v~~~~~~~~~~~ 361 (361)
+++||.++.+ +++.+.++++|.+++|++++.+
T Consensus 403 ~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai 441 (460)
T COG1207 403 NVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAI 441 (460)
T ss_pred CcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeE
Confidence 9999999886 4889999999999999998753
No 199
>PRK10191 putative acyl transferase; Provisional
Probab=99.11 E-value=9.3e-10 Score=86.99 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=47.1
Q ss_pred cccccCCcEEecceEEcC--CCEECCCcEECCCcEECCCCEECCCcEEe--ceEEccCcEECCCCEEec-cEEcCCCEEC
Q 018060 242 SLKLATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVRLS--RCTVMRGVRIKKHACISS-SIIGWHSTVG 316 (361)
Q Consensus 242 ~~~~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~i~--~~~i~~~~~i~~~~~i~~-~~i~~~~~ig 316 (361)
...+++.+.+.+++.|++ ++.|++++.||+++.|+++|+||+..... .+.|+++|.||.++.+.+ ..||+++.||
T Consensus 41 g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Ig 120 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVG 120 (146)
T ss_pred CcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEEC
Confidence 334556666666666666 35555555555555555555555543321 246667777766666664 5566666666
Q ss_pred CCcEEcC
Q 018060 317 QWARVEN 323 (361)
Q Consensus 317 ~~~~i~~ 323 (361)
+++.+..
T Consensus 121 ags~V~~ 127 (146)
T PRK10191 121 AGSVVLD 127 (146)
T ss_pred CCCEECC
Confidence 6555554
No 200
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.11 E-value=4.2e-10 Score=95.03 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=71.0
Q ss_pred ccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec-eEEccCcEECCCCEEec---------cEEcCC
Q 018060 243 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISS---------SIIGWH 312 (361)
Q Consensus 243 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------~~i~~~ 312 (361)
..+.+++.+...++|++++++.++++|.=++.+++++-|.-++.++. +.||+||.||-++.|.+ .+|+++
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn 188 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN 188 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence 44566666777777777777666665555566666666666555553 45666666666666652 379999
Q ss_pred CEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 313 STVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
|.||.++++..|+.+|++|+|++|+.|..
T Consensus 189 cliGAns~~veGV~vGdg~VV~aGv~I~~ 217 (271)
T COG2171 189 CLIGANSEVVEGVIVGDGCVVAAGVFITQ 217 (271)
T ss_pred cEeccccceEeeeEeCCCcEEecceEEeC
Confidence 99999998888899999999999999853
No 201
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.10 E-value=7.1e-10 Score=104.98 Aligned_cols=78 Identities=18% Similarity=0.359 Sum_probs=67.0
Q ss_pred CCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcC----------------C---CEECCCc
Q 018060 259 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW----------------H---STVGQWA 319 (361)
Q Consensus 259 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~----------------~---~~ig~~~ 319 (361)
+++.+ .++.|. +|+|+++|+|+ +|.|.+|+|+++|.|+++|+|.+|+++. + +.||++|
T Consensus 304 ~~~~~-~~~~i~-~s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 380 (436)
T PLN02241 304 PPSKI-EDCRIT-DSIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENT 380 (436)
T ss_pred CCcEe-cCCeEE-EeEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCC
Confidence 55666 567775 49999999999 9999999999999999999999998855 2 3899999
Q ss_pred EEcCceEECCCeEECCceEEc
Q 018060 320 RVENMTILGEDVHVCDEIYSN 340 (361)
Q Consensus 320 ~i~~~~~ig~~~~v~~~~~i~ 340 (361)
.+.+ ++|++++.||+++.+.
T Consensus 381 ~i~~-~vI~~~v~Ig~~~~i~ 400 (436)
T PLN02241 381 KIRN-AIIDKNARIGKNVVII 400 (436)
T ss_pred EEcc-eEecCCCEECCCcEEe
Confidence 9986 9999999999998885
No 202
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.10 E-value=3.7e-10 Score=106.58 Aligned_cols=86 Identities=9% Similarity=0.232 Sum_probs=74.6
Q ss_pred ecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcC-------------------C
Q 018060 252 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW-------------------H 312 (361)
Q Consensus 252 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~-------------------~ 312 (361)
...+.+.+.+.+ .++.+ .+++||++|.| +++.|.+|+|+++|.||++|+|.+|+|++ +
T Consensus 290 ~~~~~~~~~a~~-~~~~~-~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~ 366 (429)
T PRK02862 290 YTRARYLPPSKL-LDATI-TESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPP 366 (429)
T ss_pred eccCCCCCCccc-cccEE-EeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcc
Confidence 334556666666 36777 47999999999 88999999999999999999999999976 6
Q ss_pred CEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 313 STVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+.||++|.|.. ++|++++.||+++.+.+
T Consensus 367 ~~Ig~~~~i~~-~ii~~~~~i~~~~~~~~ 394 (429)
T PRK02862 367 LGIGEGTTIKR-AIIDKNARIGNNVRIVN 394 (429)
T ss_pred cEECCCCEEEE-EEECCCcEECCCcEEec
Confidence 99999999987 99999999999999954
No 203
>PLN02739 serine acetyltransferase
Probab=99.09 E-value=5.6e-10 Score=98.77 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=27.9
Q ss_pred ccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 306 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 306 ~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
..+||+++.||.+++|.+++.||++++||+|+++..
T Consensus 257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 357778888888888877788888888888887753
No 204
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.08 E-value=9.8e-10 Score=95.43 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=58.0
Q ss_pred cccCCcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEec---------eEEccCcEECCCCEEeccEEcCC
Q 018060 244 KLATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISSSIIGWH 312 (361)
Q Consensus 244 ~~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~~~i~~~ 312 (361)
....++.|++.+.||+++.|+. +++|++++.||++|.|..++.|++ ..|+++|.||.||.|. .+
T Consensus 137 ~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Il-----gg 211 (273)
T PRK11132 137 SVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKIL-----GN 211 (273)
T ss_pred eeeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEc-----CC
Confidence 3456666667777777777764 567777777888888888777763 4555566665555554 45
Q ss_pred CEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 313 STVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 313 ~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+.||++++|+.+++|-++ |.+++++.|
T Consensus 212 v~IG~~a~IGAgSvV~~d--Vp~~~~v~G 238 (273)
T PRK11132 212 IEVGRGAKIGAGSVVLQP--VPPHTTAAG 238 (273)
T ss_pred CEECCCCEECCCCEECcc--cCCCcEEEe
Confidence 555555555555555554 666666654
No 205
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.08 E-value=1.2e-09 Score=88.78 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=49.1
Q ss_pred ccCCcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEec---------eEEccCcEECCCCEEec-cEEcCC
Q 018060 245 LATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWH 312 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~ 312 (361)
+..+..|.+.+.|++++.|+. +++|++++.||++|.|++++.|+. ++|+++|.|+.++.|.+ ++||++
T Consensus 58 ~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~ 137 (162)
T TIGR01172 58 VLTGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGEN 137 (162)
T ss_pred eeeCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCC
Confidence 344566666666666666654 356666677777777777776653 46677777777766665 455555
Q ss_pred CEECCCcEEcC
Q 018060 313 STVGQWARVEN 323 (361)
Q Consensus 313 ~~ig~~~~i~~ 323 (361)
+.||+++.+..
T Consensus 138 ~~Iga~s~V~~ 148 (162)
T TIGR01172 138 AKIGANSVVLK 148 (162)
T ss_pred CEECCCCEECC
Confidence 55555555554
No 206
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.06 E-value=1.2e-09 Score=90.38 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=25.1
Q ss_pred EEccCcEECCCCEEecc--------EEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 291 TVMRGVRIKKHACISSS--------IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 291 ~i~~~~~i~~~~~i~~~--------~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
.||++++|.+++.|+.. .||+++.+-.++.|.-.|+||++|+...++.+.|
T Consensus 83 ~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAG 141 (260)
T COG1043 83 IIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAG 141 (260)
T ss_pred EECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEec
Confidence 45555555555555532 3444444444444444455555555555555444
No 207
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.05 E-value=2.6e-09 Score=87.56 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=9.0
Q ss_pred EEccCceeecccCCCccc
Q 018060 343 VVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 343 ~i~~~~~v~~~~~~~~~~ 360 (361)
.|+++++|.+++|+++++
T Consensus 144 ~VgagavV~~~vp~~~vv 161 (169)
T cd03357 144 VIGAGSVVTKDIPANVVA 161 (169)
T ss_pred EECCCCEEccccCCCcEE
Confidence 334444455556665553
No 208
>PLN02694 serine O-acetyltransferase
Probab=99.05 E-value=1.6e-09 Score=94.01 Aligned_cols=84 Identities=23% Similarity=0.238 Sum_probs=47.3
Q ss_pred EEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEe---------ceEEccCcEECCCCEEe-ccEEcCCCEECC
Q 018060 250 NIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACIS-SSIIGWHSTVGQ 317 (361)
Q Consensus 250 ~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~ 317 (361)
.|++.+.||++++|.. +++||+++.||++|.|..++.++ ++.|+++|.||.++.|. +++||+++.||.
T Consensus 162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGA 241 (294)
T PLN02694 162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGA 241 (294)
T ss_pred EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECC
Confidence 3444444444444443 45555555555555555555553 46777777777777773 456666666666
Q ss_pred CcEEcCceEECCCeEECCceEEcC
Q 018060 318 WARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 318 ~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
++.|.. + |.+++++.|
T Consensus 242 gSVV~k------d--VP~~~~v~G 257 (294)
T PLN02694 242 GSVVLI------D--VPPRTTAVG 257 (294)
T ss_pred CCEECC------c--CCCCcEEEc
Confidence 555554 2 555555544
No 209
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.04 E-value=4.4e-09 Score=88.00 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=6.9
Q ss_pred EEccCcEECCCCEEe
Q 018060 291 TVMRGVRIKKHACIS 305 (361)
Q Consensus 291 ~i~~~~~i~~~~~i~ 305 (361)
.||++|.|+++|.|.
T Consensus 97 ~IGd~v~Ig~~v~I~ 111 (203)
T PRK09527 97 TIGDNVLIAPNVTLS 111 (203)
T ss_pred EECCCCEECCCCEEE
Confidence 344444444444443
No 210
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.04 E-value=5.8e-09 Score=86.13 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=58.2
Q ss_pred ecceEEcCCCEECCCcEECCCc--EECCCCEECCCcEEec-------------eEEccCcEECCCCEEec-cEEcCCCEE
Q 018060 252 VGNVLVHESAQIGEGCLIGPDV--AVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS-SIIGWHSTV 315 (361)
Q Consensus 252 ~~~~~i~~~~~i~~~~~i~~~~--~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~-~~i~~~~~i 315 (361)
..++.||++++|+.+|+|.+.+ .||++|.|+++|.|.. ..+...+.||++|.|+. ++|..++.|
T Consensus 71 g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~I 150 (183)
T PRK10092 71 GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI 150 (183)
T ss_pred cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEE
Confidence 4566666666666666665444 6788888888777741 22345567777777753 667777777
Q ss_pred CCCcEEcCceEECCCeEECCceEEcC
Q 018060 316 GQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 316 g~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
|+++.|+.+++|.++ +.+++++.|
T Consensus 151 G~~~vIgagsvV~~d--i~~~~i~~G 174 (183)
T PRK10092 151 GDNVVVASGAVVTKD--VPDNVVVGG 174 (183)
T ss_pred CCCCEECCCCEEccc--cCCCcEEEe
Confidence 777777777777765 467777654
No 211
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.03 E-value=1.8e-09 Score=99.74 Aligned_cols=90 Identities=28% Similarity=0.436 Sum_probs=52.8
Q ss_pred ccccCCcEEecceEEcCCCEECCCcE-----ECCCcEECCCCEECCCcEEeceEEccCcEECCC-CEEeccEEcCCCEEC
Q 018060 243 LKLATGANIVGNVLVHESAQIGEGCL-----IGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKH-ACISSSIIGWHSTVG 316 (361)
Q Consensus 243 ~~~~~~~~i~~~~~i~~~~~i~~~~~-----i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~-~~i~~~~i~~~~~ig 316 (361)
..+.+++.+ ++++|.+++.|+++|. |+++|+||++|+|+ +|.|.+|+|++++.|+.+ +++.++++++++.|+
T Consensus 255 ~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~ 332 (353)
T TIGR01208 255 VVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIK 332 (353)
T ss_pred EEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCEEC
Confidence 344455544 3334434444444444 33444444444444 344557777777777776 377777888888888
Q ss_pred CCcEEcC--ceEECCCeEEC
Q 018060 317 QWARVEN--MTILGEDVHVC 334 (361)
Q Consensus 317 ~~~~i~~--~~~ig~~~~v~ 334 (361)
+++++.. +.++|++++|+
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 333 GNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred CCcccccccceEEcCCceec
Confidence 8777763 35677766654
No 212
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.02 E-value=1.7e-08 Score=82.44 Aligned_cols=203 Identities=18% Similarity=0.209 Sum_probs=131.2
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEec-C
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ-E 80 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~-~ 80 (361)
|+|+|.|.++|.. .|-+.+++|+|||.|+++....++ +++|+|.+.. +++.+.-.++ |.++.+.. .
T Consensus 6 AiIpAR~gSKgI~------~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs--~~Il~~A~~y----gak~~~~Rp~ 73 (228)
T COG1083 6 AIIPARGGSKGIK------NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDS--EEILEEAKKY----GAKVFLKRPK 73 (228)
T ss_pred EEEeccCCCCcCC------ccchHHhCCcchHHHHHHHHhcCCccceEEEcCCc--HHHHHHHHHh----CccccccCCh
Confidence 8999999988874 499999999999999999999998 6777765554 4555554444 44442221 1
Q ss_pred C---CCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCCC
Q 018060 81 T---EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTG 155 (361)
Q Consensus 81 ~---~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~ 155 (361)
. +...+-++++.+.+..... ++.++.+++-. +...++++.++.+.+++.+..+.+++.+.+.-.. .. .++ |
T Consensus 74 ~LA~D~ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~-f~-~~~-~ 149 (228)
T COG1083 74 ELASDRASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKA-FS-LNN-G 149 (228)
T ss_pred hhccCchhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHH-HH-hcC-C
Confidence 1 1223335566666666433 33577777766 5566799999999998888788777765442111 11 122 5
Q ss_pred eEeeeeecCC--CCC-----CCeEEEEEEEeCHhhHhhccCCCCccccchHHhHHhcCceEEEEec-ceEEEcCCHHHHH
Q 018060 156 KVEKFVEKPK--LFV-----GNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYI 227 (361)
Q Consensus 156 ~v~~~~ek~~--~~~-----~~~~~~Giyi~~~~~l~~l~~~~~~~~~d~l~~l~~~~~i~~~~~~-~~~~~i~t~~dy~ 227 (361)
.+..+.|.|. ..+ ....+..+|+++.+.|..- ...| ..+...|.++ ....||++..|+.
T Consensus 150 ~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~---~~~f----------~~~~~~y~m~~~~~~DID~~~Dl~ 216 (228)
T COG1083 150 EVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLEN---DCFF----------IPNTILYEMPEDESIDIDTELDLE 216 (228)
T ss_pred ceeecccCCccccccccchhhhhhcCcEEEehHHHHhhc---Ccee----------cCCceEEEcCcccccccccHHhHH
Confidence 6666655542 111 2235778999999887541 1111 2344455554 3678999999998
Q ss_pred HHHHHHH
Q 018060 228 TGLRLYL 234 (361)
Q Consensus 228 ~a~~~~l 234 (361)
.+...+.
T Consensus 217 iae~l~~ 223 (228)
T COG1083 217 IAENLIF 223 (228)
T ss_pred HHHHHhh
Confidence 8876544
No 213
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.02 E-value=5e-09 Score=79.01 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=61.5
Q ss_pred ceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEeceEEccCcEECCCCE-EeccEEcCCCEECCCcEEcCceEECCC
Q 018060 254 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC-ISSSIIGWHSTVGQWARVENMTILGED 330 (361)
Q Consensus 254 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~-i~~~~i~~~~~ig~~~~i~~~~~ig~~ 330 (361)
+..||+++.|+++++|. +...||++|.|++++.|... .+......... .++..|+++|+||.++.|.+++.||++
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~--~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~ 80 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG--SHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEG 80 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC--CCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCC
Confidence 45667777777777764 35677777777777766421 01111111222 234688999999999999988999999
Q ss_pred eEECCceEEcCcEEccCcee
Q 018060 331 VHVCDEIYSNGGVVLPHKEI 350 (361)
Q Consensus 331 ~~v~~~~~i~~~~i~~~~~v 350 (361)
+.|++++.+... +.+.+.+
T Consensus 81 ~~i~~gs~v~~~-~~~~~~~ 99 (107)
T cd05825 81 AVVGARSVVVRD-LPAWTVY 99 (107)
T ss_pred CEECCCCEEeCc-CCCCCEE
Confidence 999999988653 3444444
No 214
>PRK10502 putative acyl transferase; Provisional
Probab=99.02 E-value=2.2e-09 Score=88.98 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=58.9
Q ss_pred cccCCcEEec--ceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEec-e---------EEccCcEECCCCEEec-cE
Q 018060 244 KLATGANIVG--NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSR-C---------TVMRGVRIKKHACISS-SI 308 (361)
Q Consensus 244 ~~~~~~~i~~--~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~-~---------~i~~~~~i~~~~~i~~-~~ 308 (361)
.+.+++.+.. +..|++++.|++++.|. ..+.||++|.|++++.|.. + .+...+.||++|.|+. ++
T Consensus 59 ~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~ 138 (182)
T PRK10502 59 VIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVF 138 (182)
T ss_pred EEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCE
Confidence 3444444433 35567777777777775 3567788888888877741 1 1123345555555543 45
Q ss_pred EcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060 309 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS 352 (361)
Q Consensus 309 i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~ 352 (361)
|..++.||+++.|+.++++-++ +.+++++.| .|.+.+..
T Consensus 139 I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G---~Pa~~ik~ 177 (182)
T PRK10502 139 VAPGVTIGSGAVVGARSSVFKS--LPANTICRG---NPAVPIRP 177 (182)
T ss_pred EcCCCEECCCCEECCCCEEecc--cCCCcEEEC---CcceEecc
Confidence 5555555555555555555443 566666665 55555544
No 215
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.01 E-value=1.7e-09 Score=100.13 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=61.3
Q ss_pred ccCCcEEecceEEcCCCEECCCcEECC----CcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcE
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWAR 320 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~ 320 (361)
+++++++++.+.+ +++.|+++|+|++ +|+||++|+|+++|+|.+|+|++++.|+++++|.+|+||+++.|+.++.
T Consensus 280 ~~~~~~i~~~~~i-~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~ 358 (361)
T TIGR02091 280 LPPAKFVDSDAQV-VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVV 358 (361)
T ss_pred CCCceEecCCCEE-ECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCE
Confidence 3445555554433 3345555555554 8999999999999999999999999999999999999999999988887
Q ss_pred EcC
Q 018060 321 VEN 323 (361)
Q Consensus 321 i~~ 323 (361)
|++
T Consensus 359 i~~ 361 (361)
T TIGR02091 359 IGN 361 (361)
T ss_pred eCC
Confidence 763
No 216
>PLN02357 serine acetyltransferase
Probab=99.01 E-value=2.5e-09 Score=95.48 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=54.8
Q ss_pred cEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEe---------ceEEccCcEECCCCEEe-ccEEcCCCEEC
Q 018060 249 ANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACIS-SSIIGWHSTVG 316 (361)
Q Consensus 249 ~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~ig 316 (361)
..|++++.||+++.|.. +++|+++++||++|.|..++.|+ +++|+++|.||.++.|. +.+||+++.||
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IG 306 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIG 306 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEEC
Confidence 44455555555555543 44555555555555555555554 36888888888887774 46788888888
Q ss_pred CCcEEcCceEECCCeEECCceEE
Q 018060 317 QWARVENMTILGEDVHVCDEIYS 339 (361)
Q Consensus 317 ~~~~i~~~~~ig~~~~v~~~~~i 339 (361)
.+++|.. -+-...+++|.-+.+
T Consensus 307 AgSVV~~-dVP~~~~v~G~PArv 328 (360)
T PLN02357 307 AGSVVLK-DVPPRTTAVGNPARL 328 (360)
T ss_pred CCCEECc-ccCCCcEEECCCeEE
Confidence 8877776 444444444444433
No 217
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.00 E-value=1.7e-09 Score=102.00 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=65.7
Q ss_pred ecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceE
Q 018060 252 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTI 326 (361)
Q Consensus 252 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ 326 (361)
..+++|++++.| ++|.|. +|+||++|+|+++|+|.+|+|+++|.|+++|+|.+|+|++++.|++++.|++++.
T Consensus 325 ~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~~ 397 (425)
T PRK00725 325 AINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDPE 397 (425)
T ss_pred EEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCCCC
Confidence 347889999999 789995 8999999999999999999999999999999999999999999998877776443
No 218
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.6e-09 Score=97.08 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=59.2
Q ss_pred cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCc
Q 018060 253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM 324 (361)
Q Consensus 253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~ 324 (361)
.+..|+.+|.|.. .+ .+|+|+.+++|+++|.|.+|+|+++|.||+||+|++++|..+|.|++|++|++.
T Consensus 295 ~nSLv~~GciI~G--~V-~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 295 SNSLVAGGCIISG--TV-ENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeeeeeCCeEEEe--EE-EeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 3444555555544 44 489999999999999999999999999999999999999999999999999885
No 219
>PLN02739 serine acetyltransferase
Probab=98.99 E-value=3e-09 Score=94.26 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=45.6
Q ss_pred CcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEe---------ceEEccCcEECCCCEEeccEEcCCCEEC
Q 018060 248 GANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACISSSIIGWHSTVG 316 (361)
Q Consensus 248 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~~~~i~~~~~ig 316 (361)
+..|++.+.||+++.|+. +++|++++.||++|.|..++.|+ +..||++|.||.|+.|- .++.||
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~Il-----G~V~IG 279 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTIL-----GNISIG 279 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEe-----CCeEEC
Confidence 444444555555555532 55555555555555555555554 24556666666655554 344444
Q ss_pred CCcEEcCceEECCCeEECCceEEcC
Q 018060 317 QWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 317 ~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+++.|+.|++|-++ |.+++++.|
T Consensus 280 d~aiIGAGSVV~kD--VP~~stvvG 302 (355)
T PLN02739 280 AGAMVAAGSLVLKD--VPSHSMVAG 302 (355)
T ss_pred CCCEECCCCEECCC--CCCCcEEEe
Confidence 44444444444443 555555544
No 220
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.98 E-value=1.4e-08 Score=91.39 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=105.3
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHcC-----------CCEEEEEcc-cChHHHHHHHH
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAVG-----------VTEVVLAIN-YQPEVMLNFLK 65 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~g-----------i~~i~vv~~-~~~~~~~~~l~ 65 (361)
|.+|+||||.|+||+. ..||+|+|++ |+|++++.++++.+.+ .-+++++++ ...+.++++++
T Consensus 16 va~viLaGG~GTRLg~---~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~~ 92 (323)
T cd04193 16 VAVLLLAGGQGTRLGF---DGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFK 92 (323)
T ss_pred EEEEEECCCcccccCC---CCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHHH
Confidence 4589999999999954 8899999998 7999999999998842 125567777 46788999998
Q ss_pred HhhhccCc---EEEEecC---------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeecc
Q 018060 66 EFEAKLGI---KIICSQE---------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEY 116 (361)
Q Consensus 66 ~~~~~~~~---~i~~~~~---------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~ 116 (361)
+ ...+|+ .+.+..| ..|.|.++-..... +.+...+-+++.+...|.+...
T Consensus 93 ~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~ 171 (323)
T cd04193 93 E-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVK 171 (323)
T ss_pred h-CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccccc
Confidence 7 333344 4444332 23456665544332 3333344458999999995433
Q ss_pred CH-HHHHHHHHHcCCceEEEEEEccCC-CCceeEEE-cCCCCeEeeeeecCC
Q 018060 117 PF-AEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVM-EESTGKVEKFVEKPK 165 (361)
Q Consensus 117 ~l-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~-~~~~~~v~~~~ek~~ 165 (361)
.. -.++..+.+++.++.+-+.+...+ +.-|.+.. +.. -++.++.|-|.
T Consensus 172 ~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~-~~vvEysel~~ 222 (323)
T cd04193 172 VADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGK-PQVVEYSEISD 222 (323)
T ss_pred ccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCe-EEEEEeecCCH
Confidence 22 447778888888888876665433 33454443 322 35666666554
No 221
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.98 E-value=2.2e-09 Score=100.89 Aligned_cols=71 Identities=27% Similarity=0.400 Sum_probs=65.8
Q ss_pred EecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060 251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 323 (361)
Q Consensus 251 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 323 (361)
+.++++|++++.|+ ++.|. +|+||++|+|+++|+|.+|+|+++|.|+++|+|.+|+|++++.|++++++.+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 45678999999998 89995 7999999999999999999999999999999999999999999999988876
No 222
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.95 E-value=9.7e-09 Score=88.75 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=58.5
Q ss_pred ccCCcEEecceEEcCCCEECCCcEECCCcEECCCC-EECCCcEEeceEEccCcEECCCCEEec-cEEcC----C----CE
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGC-VVESGVRLSRCTVMRGVRIKKHACISS-SIIGW----H----ST 314 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~-~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~----~----~~ 314 (361)
++.++.|.+...+--+|.++++++|.+.++|..++ +||++ .| ++.|.++|.||+++.|.. +.|+. + +.
T Consensus 150 vp~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~ 227 (319)
T TIGR03535 150 VPTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVIS 227 (319)
T ss_pred CCCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEE
Confidence 35566666666666677777777776677777777 57774 33 566777777777777765 34444 4 56
Q ss_pred ECCCcEEcCceEECCCeEECCceEEc
Q 018060 315 VGQWARVENMTILGEDVHVCDEIYSN 340 (361)
Q Consensus 315 ig~~~~i~~~~~ig~~~~v~~~~~i~ 340 (361)
||++|.|+.++.| +..||++++|.
T Consensus 228 IGe~~~IGagA~I--GI~IGd~~VVG 251 (319)
T TIGR03535 228 IGERCLLGANSGL--GISLGDDCVVE 251 (319)
T ss_pred ECCCcEECCCCEE--CeEECCCCEEC
Confidence 6666666666666 55666666654
No 223
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.95 E-value=3.2e-09 Score=98.59 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=60.1
Q ss_pred ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 323 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 323 (361)
+.+++.+ +++.|++++.|+ +.+ .+|+|+++|+|+++|+|.+|+|++++.|++++++.+|+||++++|++++.+.+
T Consensus 281 i~~~~~i-~~~~Ig~~~~i~--~~v-~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~ 355 (369)
T TIGR02092 281 YAENSKV-ENSLVANGCIIE--GKV-ENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAG 355 (369)
T ss_pred EcCCCEE-EEeEEcCCCEEe--eEE-eCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCC
Confidence 3444444 344455555553 223 57999999999999999999999999999999999999999999999998866
No 224
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.95 E-value=1e-08 Score=76.49 Aligned_cols=79 Identities=24% Similarity=0.280 Sum_probs=45.6
Q ss_pred ccCCcEEecceEEcC--CCEECCCcEECCCcEECCCCEECCCcE---EeceEEccCcEECCCCEEec-cEEcCCCEECCC
Q 018060 245 LATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVR---LSRCTVMRGVRIKKHACISS-SIIGWHSTVGQW 318 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~ 318 (361)
+++++.+.++++++. ++.|++++.|++++.|+.+++|+.++. +.+++|+++|.|+.++.+.. +.|++++.|+++
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~ 84 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGAN 84 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCC
Confidence 344555555555544 334555555555555555555555554 34556777777777777765 556666666555
Q ss_pred cEEcC
Q 018060 319 ARVEN 323 (361)
Q Consensus 319 ~~i~~ 323 (361)
+.+.+
T Consensus 85 ~~i~~ 89 (101)
T cd03354 85 AVVTK 89 (101)
T ss_pred CEECc
Confidence 55554
No 225
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.92 E-value=7.4e-08 Score=90.56 Aligned_cols=183 Identities=20% Similarity=0.280 Sum_probs=114.1
Q ss_pred CeEEEEecCCCcccCCCCCCCCCcccee---CCcchHHHHHHHHHHc------------C-CCEEEEEccc-ChHHHHHH
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKAV------------G-VTEVVLAINY-QPEVMLNF 63 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl---~g~pli~~~l~~l~~~------------g-i~~i~vv~~~-~~~~~~~~ 63 (361)
|.+||||||.|+||+. ..||+|+|+ .|+|+++++++++.+. + .-+++|+++. ..+.++++
T Consensus 107 vavViLAGG~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~ 183 (482)
T PTZ00339 107 VAVLILAGGLGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQF 183 (482)
T ss_pred eEEEEECCCCcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHH
Confidence 4589999999999975 899999999 4999999999999875 1 2255666554 67889999
Q ss_pred HHHhhhccCc---EEEEecC----------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCee
Q 018060 64 LKEFEAKLGI---KIICSQE----------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVI 113 (361)
Q Consensus 64 l~~~~~~~~~---~i~~~~~----------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~ 113 (361)
+++. ..+|+ ++.+..| ..|.|.++-..... +.+...+-+++.+...|.+
T Consensus 184 f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~ 262 (482)
T PTZ00339 184 LEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNI 262 (482)
T ss_pred HHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcc
Confidence 9862 12222 2322221 12456665544432 3333344448999999996
Q ss_pred eccCH-HHHHHHHHHcCC-ceEEEEEEccCCCCceeEEEcCCCCeEeeeeecCCC-------C----CCCeEEEEEEEeC
Q 018060 114 SEYPF-AEMIEFHKAHGG-EASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKL-------F----VGNKINAGIYLLN 180 (361)
Q Consensus 114 ~~~~l-~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~ek~~~-------~----~~~~~~~Giyi~~ 180 (361)
..... -.++-++...+. ++...+.+....+.-|.+......-.|.++.|-+.. . .-...+...++|+
T Consensus 263 L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fs 342 (482)
T PTZ00339 263 LAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFS 342 (482)
T ss_pred cccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceEEEEEE
Confidence 54332 346677666666 555444454444445655433211256777664321 1 1123577888899
Q ss_pred HhhHhhc
Q 018060 181 PAVLDRI 187 (361)
Q Consensus 181 ~~~l~~l 187 (361)
.++++.+
T Consensus 343 l~fl~~~ 349 (482)
T PTZ00339 343 LDFLKKV 349 (482)
T ss_pred HHHHHHH
Confidence 8888754
No 226
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=7.5e-09 Score=95.05 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=38.2
Q ss_pred CcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCce
Q 018060 272 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEI 337 (361)
Q Consensus 272 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~ 337 (361)
+|+|.++|.|++++.|.+|+|+++|+||+ +. . +++ +.+|.++.+.++.+++.+++++.+.
T Consensus 296 ~Sii~~~~~i~~~~~i~~sIi~~~~~ig~-~~-~---i~d-~~~g~~~~i~~g~~~~~~~~~~~~~ 355 (358)
T COG1208 296 NSIIMDNVVIGHGSYIGDSIIGENCKIGA-SL-I---IGD-VVIGINSEILPGVVVGPGSVVESGE 355 (358)
T ss_pred eeEEEcCCEECCCCEEeeeEEcCCcEECC-ce-e---ecc-eEecCceEEcCceEeCCCccccCcc
Confidence 56666777777777777777777777766 11 1 666 6666666666666666666555544
No 227
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.88 E-value=2.2e-08 Score=75.52 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=32.8
Q ss_pred eEEccCcEECCCCEEecc----EEcCCCEECCCcEEcCceEECCCeEECCceEE-cCcEEccCceeecccCCCccc
Q 018060 290 CTVMRGVRIKKHACISSS----IIGWHSTVGQWARVENMTILGEDVHVCDEIYS-NGGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~----~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~~~~~~~~~ 360 (361)
..|+++|.|++++.|... .......+...+.|+++|.||.++.+..++.+ .++.+.+++.+.+++++++++
T Consensus 24 i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~~~~~~~~ 99 (107)
T cd05825 24 VTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVY 99 (107)
T ss_pred eEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCcCCCCCEE
Confidence 445555555555555321 11111222333344444444444444444444 244555566666666666554
No 228
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.87 E-value=1.7e-08 Score=71.35 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=20.6
Q ss_pred eEEccCcEECCCCEEeccEEc---CCCEECCCcEEcCceEECCCeEECCceEE
Q 018060 290 CTVMRGVRIKKHACISSSIIG---WHSTVGQWARVENMTILGEDVHVCDEIYS 339 (361)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~i~---~~~~ig~~~~i~~~~~ig~~~~v~~~~~i 339 (361)
+.|++++.|+++++|.+.... ..+.||+++.+..++.+..++.|++++.+
T Consensus 19 ~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i 71 (78)
T cd00208 19 VVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVI 71 (78)
T ss_pred EEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEE
Confidence 344444444444444443221 22444444444444444444444444443
No 229
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.86 E-value=6.9e-07 Score=83.37 Aligned_cols=181 Identities=18% Similarity=0.228 Sum_probs=117.4
Q ss_pred EEEEecCCCcccCCCCCCCCCcccee-CCcchHHHHHHHHHHc----CC-CEEEEEccc-ChHHHHHHHHHhhhccCcEE
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKAV----GV-TEVVLAINY-QPEVMLNFLKEFEAKLGIKI 75 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl-~g~pli~~~l~~l~~~----gi-~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i 75 (361)
+|.||||.|+||+. ..||.++++ .|+++++.+++.+... |. -..++.++. ..+..+++|+++.. ++.++
T Consensus 82 vlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~-~~~~i 157 (469)
T PLN02474 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTN-SNIEI 157 (469)
T ss_pred EEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCC-Cccce
Confidence 78899999999998 899999999 5789999888777543 32 355788887 45779999998542 23334
Q ss_pred EEecC------------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018060 76 ICSQE------------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK 126 (361)
Q Consensus 76 ~~~~~------------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~ 126 (361)
.+..| ..|.|.++-..... +.+...+-+++++...|.+....=-.++.++.
T Consensus 158 ~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~ 237 (469)
T PLN02474 158 HTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLI 237 (469)
T ss_pred EEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHH
Confidence 33322 23445555443332 33333444599999999953321133777888
Q ss_pred HcCCceEEEEEEccCC-CCceeEEEcCCCCeEeeeeecCCC--------CCCCeEEEEEEEeCHhhHhhc
Q 018060 127 AHGGEASIMVTKVDEP-SKYGVVVMEESTGKVEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI 187 (361)
Q Consensus 127 ~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~~v~~~~ek~~~--------~~~~~~~~Giyi~~~~~l~~l 187 (361)
.++++.++-+++...+ ..-|.+...+..-++.++.+-|.. ..-...++..++|+-++++++
T Consensus 238 ~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~ 307 (469)
T PLN02474 238 QNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
T ss_pred hcCCceEEEEeecCCCCCCccEEEEECCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHH
Confidence 8888877766654333 233544422211357777766542 133467999999999988776
No 230
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.85 E-value=4.4e-08 Score=81.96 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=59.7
Q ss_pred cceEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEece-E---------------------EccCcEECCCCEEec-c
Q 018060 253 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRC-T---------------------VMRGVRIKKHACISS-S 307 (361)
Q Consensus 253 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~-~---------------------i~~~~~i~~~~~i~~-~ 307 (361)
+.+.||+++.|++++.|. +++.||++|.|++++.|.+. + -...+.||+++.|+. +
T Consensus 64 ~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~ 143 (192)
T PRK09677 64 GKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENV 143 (192)
T ss_pred CeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCC
Confidence 566777777777777775 46777888888887777631 1 012355666666653 5
Q ss_pred EEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060 308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS 352 (361)
Q Consensus 308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~ 352 (361)
+|..++.||++|.|+++++|.++ +.+++.+.| .|.+.+.+
T Consensus 144 ~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G---~Pa~~ik~ 183 (192)
T PRK09677 144 TILPGVSIGNGCIVGANSVVTKS--IPENTVIAG---NPAKIIKK 183 (192)
T ss_pred EEcCCCEECCCCEECCCCEECcc--cCCCcEEEe---cCCEEEec
Confidence 56666666666666666666653 566666665 45555544
No 231
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.84 E-value=5.3e-08 Score=83.50 Aligned_cols=116 Identities=24% Similarity=0.282 Sum_probs=82.5
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET 81 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 81 (361)
|||+|.+.++|+.. |.|.+++|+|||+|+++++.++. +++|+|.+.. +++.+.+.++ +..+......
T Consensus 2 aiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~~----g~~v~~~~~~ 69 (217)
T PF02348_consen 2 AIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEEY----GAKVIFRRGS 69 (217)
T ss_dssp EEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHT----TSEEEE--TT
T ss_pred EEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHHc----CCeeEEcChh
Confidence 79999999999866 99999999999999999999986 7898877776 5677777765 4666655555
Q ss_pred CCCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHHcCCc
Q 018060 82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGE 131 (361)
Q Consensus 82 ~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~~~~~ 131 (361)
...++......+...... .++.++.+.||. +.. ..+.++++.+.+...+
T Consensus 70 ~~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 70 LADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp SSSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred hcCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 444443333333444433 444788899999 333 3589999998888764
No 232
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.83 E-value=3.9e-08 Score=78.09 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=54.6
Q ss_pred EEcCCCEECC-CcEECC-CcEECCCCEECCCcEEece--EEccC----------------cEECCCCEEeccEEcCCCEE
Q 018060 256 LVHESAQIGE-GCLIGP-DVAVGPGCVVESGVRLSRC--TVMRG----------------VRIKKHACISSSIIGWHSTV 315 (361)
Q Consensus 256 ~i~~~~~i~~-~~~i~~-~~~ig~~~~i~~~~~i~~~--~i~~~----------------~~i~~~~~i~~~~i~~~~~i 315 (361)
.||+++.|+. .+.++. .+.||++|.|++++.|... +-..+ ..........+++||++|.|
T Consensus 3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 82 (145)
T cd03349 3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWI 82 (145)
T ss_pred EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEE
Confidence 4555555555 344432 5666666666666666422 11110 01112223456899999999
Q ss_pred CCCcEEcCceEECCCeEECCceEEcC
Q 018060 316 GQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 316 g~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
|.++.+.+++.||++++|++++++..
T Consensus 83 g~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 83 GHGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred CCCCEEeCCCEECCCCEECCCCEEcc
Confidence 99999988899999999999999865
No 233
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.82 E-value=2.7e-08 Score=75.31 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=17.2
Q ss_pred EecceEEcCCCEECC--CcEECCCcEECCCCEECC
Q 018060 251 IVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVES 283 (361)
Q Consensus 251 i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~ 283 (361)
|..++.|+++++|.+ ++.|+++|.|+++|+|..
T Consensus 4 Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~ 38 (109)
T cd04647 4 IGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYD 38 (109)
T ss_pred ECCCcEECCCCEEecCCceEECCCCEECCCCEEEC
Confidence 444555555555544 555555555555555543
No 234
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.81 E-value=2.5e-08 Score=84.39 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=40.2
Q ss_pred ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEec---------eEEccCcEECCCC-EEeccEEcCCCE
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHA-CISSSIIGWHST 314 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~-~i~~~~i~~~~~ 314 (361)
+++.+++.-+++++.++.|..++++|+.+.||+||.||.++.|.. ++|+++|.||.|+ .+.+.++|++|+
T Consensus 129 vM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~V 208 (271)
T COG2171 129 VMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCV 208 (271)
T ss_pred EcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcE
Confidence 334444444555555555555555555566666666666666642 3455555555544 333344444444
Q ss_pred ECCCcEEcC
Q 018060 315 VGQWARVEN 323 (361)
Q Consensus 315 ig~~~~i~~ 323 (361)
|+.++.|.+
T Consensus 209 V~aGv~I~~ 217 (271)
T COG2171 209 VAAGVFITQ 217 (271)
T ss_pred EecceEEeC
Confidence 444333333
No 235
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.80 E-value=6.5e-09 Score=79.16 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=81.5
Q ss_pred CcEEecceEEcCCCEECCCcEEC---CCcEECCCCEECCCcEEec--------------eEEccCcEECCCCEEeccEEc
Q 018060 248 GANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSR--------------CTVMRGVRIKKHACISSSIIG 310 (361)
Q Consensus 248 ~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~i~~~~i~ 310 (361)
.+.|.+.+.|++++++++.+++- +..+||+|+.|...+.|.| -+||.+-...-+|..+...+|
T Consensus 20 Es~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvG 99 (190)
T KOG4042|consen 20 ESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVG 99 (190)
T ss_pred ecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhc
Confidence 34456777777777777777654 4678999999998888865 256666666666666666899
Q ss_pred CCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeec
Q 018060 311 WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS 352 (361)
Q Consensus 311 ~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~ 352 (361)
++.+|+..|.+++|+.+.++|.||+++.+.....+|.+++..
T Consensus 100 d~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vY 141 (190)
T KOG4042|consen 100 DRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVY 141 (190)
T ss_pred CcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEE
Confidence 999999999999999999999999999998777777766643
No 236
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.79 E-value=1.4e-08 Score=76.81 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=49.5
Q ss_pred ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccC
Q 018060 289 RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 347 (361)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~ 347 (361)
+..||+++.|+++|++..+.||..+.+|.++.|+.+|++-+.|+|-+++++....+.|-
T Consensus 84 p~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vpp 142 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPP 142 (184)
T ss_pred eeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCC
Confidence 66899999999999999999988888888888888888888888888888865555444
No 237
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=2.1e-06 Score=70.75 Aligned_cols=185 Identities=15% Similarity=0.263 Sum_probs=111.5
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEcccC--hHHHHHHHHHhhhccCcEEEE
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQ--PEVMLNFLKEFEAKLGIKIIC 77 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~g-i~~i~vv~~~~--~~~~~~~l~~~~~~~~~~i~~ 77 (361)
|-++|+.|..||--.| -|.|+|++++|||+++|+++.++. +++++|.++.. .+.+..++.+. |..+.
T Consensus 3 ~I~~IiQARmgStRLp-----gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~----G~~vf- 72 (241)
T COG1861 3 MILVIIQARMGSTRLP-----GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH----GFYVF- 72 (241)
T ss_pred cEEEEeeecccCccCC-----cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc----CeeEe-
Confidence 4577888876644334 499999999999999999999986 78999998873 35566666653 44442
Q ss_pred ecCCCCCCCchHHH-HHHhhccCCCCCcEEEEeCCe-eeccC-HHHHHHHHHHcCCceEEEEEEccCCCCceeEEEcCCC
Q 018060 78 SQETEPLGTAGPLA-LARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEEST 154 (361)
Q Consensus 78 ~~~~~~~g~~~al~-~~~~~~~~~~~~~~lv~~~D~-~~~~~-l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~ 154 (361)
.|+.+.++ +....++.-..+.++=+.||. +.... ++..++.|.+++++-+-. .
T Consensus 73 ------rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~---------------~--- 128 (241)
T COG1861 73 ------RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSN---------------T--- 128 (241)
T ss_pred ------cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccccc---------------c---
Confidence 23333332 222333222333778899999 44444 688899998877642211 0
Q ss_pred CeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccCC-CC-ccccchHHhHHhcCceEEEEe---------cceEEEcCCH
Q 018060 155 GKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-PT-SIEKEVFPKIALEGKLFAMVL---------PGFWMDIGQP 223 (361)
Q Consensus 155 ~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~~-~~-~~~~d~l~~l~~~~~i~~~~~---------~~~~~~i~t~ 223 (361)
+. ..-++.-+|+...|...... .. .....+-+.+-.+.+++.+.+ +++-..++|.
T Consensus 129 ~~--------------p~G~~vEV~~a~~L~~a~k~~~e~~~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~ 194 (241)
T COG1861 129 GA--------------PLGTDVEVMKARALKKAAKEALEAYYREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQ 194 (241)
T ss_pred CC--------------ccccceeeeehHHHHHhHhhccchhhhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccH
Confidence 10 11245566777766654311 11 112233344444444444332 2355678999
Q ss_pred HHHHHHHHHH
Q 018060 224 RDYITGLRLY 233 (361)
Q Consensus 224 ~dy~~a~~~~ 233 (361)
+||--+...+
T Consensus 195 eD~~~~~~vy 204 (241)
T COG1861 195 EDFALAKAVY 204 (241)
T ss_pred HHHHHHHHHH
Confidence 9997776544
No 238
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.63 E-value=2.6e-07 Score=73.42 Aligned_cols=58 Identities=22% Similarity=0.149 Sum_probs=29.2
Q ss_pred ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEEccCceeecccCC
Q 018060 289 RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILK 356 (361)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~~~ 356 (361)
++.|+++|.||.++.| +.++.||+++.|+.+++|..+ +.+++++.+ .|...+.....+
T Consensus 73 ~~~Ig~~~~Ig~~~~i-----~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G---~Pa~~i~~~~~~ 130 (145)
T cd03349 73 DVIIGNDVWIGHGATI-----LPGVTIGDGAVIAAGAVVTKD--VPPYAIVGG---NPAKVIRYRFDE 130 (145)
T ss_pred CcEECCCCEECCCCEE-----eCCCEECCCCEECCCCEEccc--cCCCeEEEe---cCCEeehhhCCH
Confidence 3444444444444444 444555555555555555543 466666655 455555544433
No 239
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.62 E-value=4.4e-07 Score=73.47 Aligned_cols=79 Identities=25% Similarity=0.290 Sum_probs=58.5
Q ss_pred ccCCcEEecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEEec---------eEEccCcEECCCCEEec-cEEcCC
Q 018060 245 LATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWH 312 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~ 312 (361)
...+..|++.+.||++.+|.. +.+|++.+.||++|.|..+++|+. -.|++++.||.++.|-+ -.||++
T Consensus 64 ~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~ 143 (194)
T COG1045 64 FLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDN 143 (194)
T ss_pred hhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCC
Confidence 345666777777777777765 468888888888888888888862 37888888888887654 567777
Q ss_pred CEECCCcEEcC
Q 018060 313 STVGQWARVEN 323 (361)
Q Consensus 313 ~~ig~~~~i~~ 323 (361)
+.||+++++..
T Consensus 144 akIGA~sVVlk 154 (194)
T COG1045 144 AKIGAGSVVLK 154 (194)
T ss_pred CEECCCceEcc
Confidence 77777777665
No 240
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.59 E-value=2.7e-07 Score=77.33 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=58.0
Q ss_pred cceEEcCCCEECCCcEE--CCCcEECCCCEECCCcEEe-ceEEccCcEECCC--CEEeccEEcCCCEECCCcEEcCceEE
Q 018060 253 GNVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKH--ACISSSIIGWHSTVGQWARVENMTIL 327 (361)
Q Consensus 253 ~~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~--~~i~~~~i~~~~~ig~~~~i~~~~~i 327 (361)
....+|..+.++.++.+ ..+..||.++.+++++.|. +++.++...-..+ ....+++||++++||.++.|.+|+.|
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I 145 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI 145 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence 44555555555555543 2344566666666666654 2333333333222 22335899999999999999999999
Q ss_pred CCCeEECCceEEcC
Q 018060 328 GEDVHVCDEIYSNG 341 (361)
Q Consensus 328 g~~~~v~~~~~i~~ 341 (361)
|++++||+++++..
T Consensus 146 G~gavigagsVVtk 159 (190)
T COG0110 146 GEGAVIGAGSVVTK 159 (190)
T ss_pred CCCcEEeeCCEEeC
Confidence 99999999988853
No 241
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.58 E-value=3.9e-06 Score=74.40 Aligned_cols=181 Identities=22% Similarity=0.287 Sum_probs=117.2
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeC-CcchHHHHHHHHHHc----C-CCEEEEEccc-ChHHHHHHHHHhhhccCcEE
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAV----G-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI 75 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~-g~pli~~~l~~l~~~----g-i~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i 75 (361)
+|+||||.|+||+- ..||.++|+. |+++++..++++... + .-..++.++. .++.++++|+++.. ...++
T Consensus 6 vl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~-~~~~v 81 (300)
T cd00897 6 VLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG-VNVDI 81 (300)
T ss_pred EEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-CccCe
Confidence 68899999999987 8899999995 889999999888653 3 2366888887 46789999998542 11222
Q ss_pred EEecC------------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018060 76 ICSQE------------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK 126 (361)
Q Consensus 76 ~~~~~------------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~ 126 (361)
.+..| ..|.|.++-..... +.+...+-+++.+...|.+....=-.++.++.
T Consensus 82 ~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~~~ 161 (300)
T cd00897 82 HTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHMV 161 (300)
T ss_pred EEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHHHH
Confidence 22211 12445554443332 23333344599999999954321133778888
Q ss_pred HcCCceEEEEEEccCCC-CceeEEEcCCCCeEeeeeecCCC----C----CCCeEEEEEEEeCHhhHhhc
Q 018060 127 AHGGEASIMVTKVDEPS-KYGVVVMEESTGKVEKFVEKPKL----F----VGNKINAGIYLLNPAVLDRI 187 (361)
Q Consensus 127 ~~~~~~~i~~~~~~~~~-~~~~v~~~~~~~~v~~~~ek~~~----~----~~~~~~~Giyi~~~~~l~~l 187 (361)
.+++++.+-+++...+. .-|.+...+..=++.++.|-|.. + .-...+++.++|+-++++.+
T Consensus 162 ~~~~~~~~evv~Kt~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 162 DNKAEYIMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV 231 (300)
T ss_pred hcCCceEEEEeecCCCCCcccEEEEECCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence 88888888666654443 44544432211357777776642 1 23467888899998888765
No 242
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.55 E-value=1.2e-07 Score=72.27 Aligned_cols=108 Identities=21% Similarity=0.188 Sum_probs=86.2
Q ss_pred cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEe----ceEEccCcEECCCCEEec--------------cEEcCCCE
Q 018060 253 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS--------------SIIGWHST 314 (361)
Q Consensus 253 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~--------------~~i~~~~~ 314 (361)
..+.|.|++.++..+-|.++.+|+++|++.+.+++. .-+||+|+.|.+.++|.+ -+||.+.+
T Consensus 7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~Nv 86 (190)
T KOG4042|consen 7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNV 86 (190)
T ss_pred ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccce
Confidence 347788999999999999999999999999999885 468999999999998885 15777776
Q ss_pred ECCCcE-----EcCceEECCCeEECCceEE-cCcEEccCceeec--ccCCCccc
Q 018060 315 VGQWAR-----VENMTILGEDVHVCDEIYS-NGGVVLPHKEIKS--SILKPEIV 360 (361)
Q Consensus 315 ig~~~~-----i~~~~~ig~~~~v~~~~~i-~~~~i~~~~~v~~--~~~~~~~~ 360 (361)
..-+|. +++..+|+..+.+|+|+.+ .+|.+++++++-. ++|+++++
T Consensus 87 FeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~v 140 (190)
T KOG4042|consen 87 FEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSV 140 (190)
T ss_pred EEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceE
Confidence 665554 4556777788888888888 5889999999855 77777654
No 243
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2e-07 Score=79.77 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=54.0
Q ss_pred ECCCcEECCCCEECCCcEEe-ceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 269 IGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 269 i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
|-++++|.+.+++.+.++|+ |+.|+.++.||++++|.+|+|.++|.|.+++.+.. ++||-++.||.=+.+.+
T Consensus 285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~-sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLH-SIIGWKSSIGRWARVEG 357 (407)
T ss_pred EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEe-eeecccccccceeeecc
Confidence 33455555555555555555 56668888889999999999999999999999888 88888888885555543
No 244
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.52 E-value=2.6e-07 Score=75.72 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=56.3
Q ss_pred eEEcCCCEECCCcEEC--CCcEECCCCEECCCcEEeceEEccCcEECC---CCEEeccEEcCCCEECCCcEEcCceEECC
Q 018060 255 VLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWARVENMTILGE 329 (361)
Q Consensus 255 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~ig~~~~i~~~~~ig~ 329 (361)
+-|+|.++||.+..+. -+.+||+-++||+++. |++++++|. ++--+.-.||+++.||.++.|.+++.||+
T Consensus 149 vdihpaa~ig~gilldhatgvvigeTAvvg~~vS-----ilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGe 223 (269)
T KOG4750|consen 149 VDIHPAAKIGKGILLDHATGVVIGETAVVGDNVS-----ILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGE 223 (269)
T ss_pred ccccchhhcccceeeccccceeecceeEecccee-----eecceeeccccccccccCCcccCCeEEccccEEeCCeeECC
Confidence 3577777777776664 1335555555555444 456666653 12222348999999999999999999999
Q ss_pred CeEECCceEEc
Q 018060 330 DVHVCDEIYSN 340 (361)
Q Consensus 330 ~~~v~~~~~i~ 340 (361)
+++|++|+++.
T Consensus 224 gavIaAGsvV~ 234 (269)
T KOG4750|consen 224 GAVIAAGSVVL 234 (269)
T ss_pred CcEEeccceEE
Confidence 99999999873
No 245
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.45 E-value=3.1e-07 Score=69.57 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=58.0
Q ss_pred ccCCcEEe---cceEEcCCCEECCCcEECC------------CcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEE
Q 018060 245 LATGANIV---GNVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSII 309 (361)
Q Consensus 245 ~~~~~~i~---~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i 309 (361)
+.+++.|. .++.+|+.++++.+++|++ +..||+.+.|++.|.+.-+.|+..+++|.||+|++
T Consensus 42 v~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGr--- 118 (184)
T KOG3121|consen 42 VEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGR--- 118 (184)
T ss_pred EeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcC---
Confidence 34566665 4667777777777777764 23577778888887777777777777777666554
Q ss_pred cCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 310 GWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 310 ~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+|++.+-|+|.+++++.....+.+-+.+.+
T Consensus 119 --rCVlkdCc~ild~tVlPpet~vppy~~~~g 148 (184)
T KOG3121|consen 119 --RCVLKDCCRILDDTVLPPETLVPPYSTIGG 148 (184)
T ss_pred --ceEhhhheeccCCcccCcccccCCceEEcC
Confidence 444444455555555555555555555543
No 246
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.40 E-value=1.3e-06 Score=86.94 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=47.1
Q ss_pred cEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC-cEEccCcee
Q 018060 273 VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEI 350 (361)
Q Consensus 273 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~-~~i~~~~~v 350 (361)
+.||++|.|+++|.|.. +..++..+ .+.+++||++|.||.+++|.+++.||+++.|++++.+.. ..+-+++..
T Consensus 617 v~IGd~~~I~~~~~i~~-h~~~~~~~----~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~ 690 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQT-HLFEDRVM----KSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRW 690 (695)
T ss_pred eEECCCCEECCCCEEEe-cccccccc----ccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCCEE
Confidence 46666666666666543 12222111 244578888888888888888888888888888888753 345454444
No 247
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.39 E-value=1.1e-06 Score=87.50 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=41.8
Q ss_pred CCcEECCCCEECCCcEEeceEEccCcEECCCCE-EeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcC
Q 018060 271 PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC-ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 271 ~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~-i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~ 341 (361)
+...||+||.|+++|.+.+..+ ..+.. ++..+||++|.||.+|+|.++++||++++|++++.+.+
T Consensus 130 ~li~IG~~~~I~~~v~l~~~~~------~~~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~ 195 (695)
T TIGR02353 130 DLLTIGAGTIVRKEVMLLGYRA------ERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQG 195 (695)
T ss_pred CceEECCCCEECCCCEEEcccC------CCCceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecC
Confidence 3455677777777666643222 22222 33347777888888888877788888888887777754
No 248
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.37 E-value=6.9e-07 Score=77.75 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=61.0
Q ss_pred EecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCC
Q 018060 251 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGED 330 (361)
Q Consensus 251 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~ 330 (361)
...+...-+++.|-.+..+.+-..+|++|.||++ ++||++|.|++++.|.+|++..+..++..+.+.. +++|-+
T Consensus 249 ~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~-----vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s-~ivg~~ 322 (371)
T KOG1322|consen 249 KYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPN-----VVIGPRVRIEDGVRLQDSTILGADYYETHSEISS-SIVGWN 322 (371)
T ss_pred ccCCccccCCccccccEeeccccccCCccEECCC-----ceECCCcEecCceEEEeeEEEccceechhHHHHh-hhcccc
Confidence 3444455555666555555444455555555554 5568888888999999998888888888887776 777777
Q ss_pred eEECCceEEcC-cEEccCcee
Q 018060 331 VHVCDEIYSNG-GVVLPHKEI 350 (361)
Q Consensus 331 ~~v~~~~~i~~-~~i~~~~~v 350 (361)
+.||.+..+.+ +.++-+..|
T Consensus 323 ~~IG~~~~id~~a~lG~nV~V 343 (371)
T KOG1322|consen 323 VPIGIWARIDKNAVLGKNVIV 343 (371)
T ss_pred ccccCceEEecccEeccceEE
Confidence 77777776643 333444333
No 249
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.24 E-value=8.5e-06 Score=67.29 Aligned_cols=109 Identities=16% Similarity=0.274 Sum_probs=85.3
Q ss_pred ccCCcEEe-cceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEec-cEEcCCCEECCCcEEc
Q 018060 245 LATGANIV-GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVE 322 (361)
Q Consensus 245 ~~~~~~i~-~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~ 322 (361)
+++++.+. ..+.+..++.||+++.+ ...++|+...+|+++.|...++..++.|+..|.+.+ .+...++.||.++.|.
T Consensus 6 vPp~Tr~e~~~ivv~gdViIG~nS~l-~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~ 84 (277)
T COG4801 6 VPPNTRVEEAIIVVKGDVIIGKNSML-KYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIK 84 (277)
T ss_pred cCCCCceeeeeEEEeccEEEccccee-eeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceee
Confidence 45555444 33444455556666666 466888999999999998888888999999999886 5778889999999999
Q ss_pred CceEECCCeEECCceEEcCcEEccCceeeccc
Q 018060 323 NMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI 354 (361)
Q Consensus 323 ~~~~ig~~~~v~~~~~i~~~~i~~~~~v~~~~ 354 (361)
+..+++.+-.+|+++.|+++++..+-.+.++.
T Consensus 85 gkl~v~gdLdig~dV~Ieggfva~g~Ivirnp 116 (277)
T COG4801 85 GKLTVIGDLDIGADVIIEGGFVAKGWIVIRNP 116 (277)
T ss_pred eeEEEecccccccceEEecCeeecceEEEcCC
Confidence 98999999999999999998888777776643
No 250
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=98.22 E-value=2.2e-05 Score=74.03 Aligned_cols=180 Identities=19% Similarity=0.250 Sum_probs=115.2
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc--------------C-CCEEEEEccc-ChHHHHHH
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------------G-VTEVVLAINY-QPEVMLNF 63 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~--------------g-i~~i~vv~~~-~~~~~~~~ 63 (361)
+|+||||.|+||+. ..||.|++++ ++++++...+++.+. + .-..+|.++. ..+.++++
T Consensus 119 vvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~f 195 (493)
T PLN02435 119 VVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKF 195 (493)
T ss_pred EEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHH
Confidence 67889999999998 8999999885 899999998876432 1 1255888887 56789999
Q ss_pred HHHhhhccCc---EEEEecC---------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeee
Q 018060 64 LKEFEAKLGI---KIICSQE---------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVIS 114 (361)
Q Consensus 64 l~~~~~~~~~---~i~~~~~---------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~ 114 (361)
|++. ..+|. ++.+..| ..|.|.++-..... +.+...+-+++.+...|.+.
T Consensus 196 f~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 274 (493)
T PLN02435 196 FESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL 274 (493)
T ss_pred HHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence 9872 22232 2333322 23567665544332 33333444488999999954
Q ss_pred ccC-HHHHHHHHHHcCCceEEEEEEccCC-CCceeEEEc-CCCC--eEeeeeecCCC-----------CCCCeEEEEEEE
Q 018060 115 EYP-FAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVME-ESTG--KVEKFVEKPKL-----------FVGNKINAGIYL 178 (361)
Q Consensus 115 ~~~-l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~-~~~~--~v~~~~ek~~~-----------~~~~~~~~Giyi 178 (361)
... --.++..+..++.++.+-+.+...+ +.-|.+... .+ | .|.+|.|-+.. ..-...+.+.++
T Consensus 275 ~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~-g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~ 353 (493)
T PLN02435 275 VRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG-GPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHM 353 (493)
T ss_pred ccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC-CCEEEEEeccCCHHHHhccCccccccccchhhHHHhh
Confidence 333 2447778888888877766655433 344666542 22 3 46667655431 112335677888
Q ss_pred eCHhhHhhc
Q 018060 179 LNPAVLDRI 187 (361)
Q Consensus 179 ~~~~~l~~l 187 (361)
|+.++++.+
T Consensus 354 fs~~fL~~~ 362 (493)
T PLN02435 354 FTLDFLNQV 362 (493)
T ss_pred ccHHHHHHH
Confidence 999988766
No 251
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=98.16 E-value=3.6e-05 Score=68.56 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=109.4
Q ss_pred EEEEecCCCcccCCCCCCCCCcccee---CCcchHHHHHHHHHHcC---------CCEEEEEccc-ChHHHHHHHHHhhh
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKAVG---------VTEVVLAINY-QPEVMLNFLKEFEA 69 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl---~g~pli~~~l~~l~~~g---------i~~i~vv~~~-~~~~~~~~l~~~~~ 69 (361)
+|+||+|.|+||+- ..||.++|+ .|+++++..++++.+.. .-..+|.++. .+++++++|++..
T Consensus 3 ~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~- 78 (315)
T cd06424 3 FVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN- 78 (315)
T ss_pred EEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC-
Confidence 68999999999998 899999999 48999999988876532 2366888887 5678999998622
Q ss_pred ccC---cEEEEec------------------------CCCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeeccC
Q 018060 70 KLG---IKIICSQ------------------------ETEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEYP 117 (361)
Q Consensus 70 ~~~---~~i~~~~------------------------~~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~~ 117 (361)
.+| .++.+.. ...|.|.++-..... +.+...+-+++.+...|......
T Consensus 79 yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~ 158 (315)
T cd06424 79 YFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFK 158 (315)
T ss_pred ccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhc
Confidence 122 1222221 122456655444332 23333444478888888844333
Q ss_pred -HHHHHHHHHHcCCceEEEEEEccCCCCceeEEE-cCCCC--eE--eeeeecCC----C------------CCCCeEEEE
Q 018060 118 -FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM-EESTG--KV--EKFVEKPK----L------------FVGNKINAG 175 (361)
Q Consensus 118 -l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~-~~~~~--~v--~~~~ek~~----~------------~~~~~~~~G 175 (361)
.-.++-.+..++.++...+.+....+.-|.+.. +..+| .| .+|.|-+. . ......+++
T Consensus 159 adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi~ 238 (315)
T cd06424 159 AIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNIN 238 (315)
T ss_pred cChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCeee
Confidence 344556666667777766556544455665543 21113 33 55544331 0 111146788
Q ss_pred EEEeCHhhHhh
Q 018060 176 IYLLNPAVLDR 186 (361)
Q Consensus 176 iyi~~~~~l~~ 186 (361)
.++|+-+.+..
T Consensus 239 ~~~f~l~~~~~ 249 (315)
T cd06424 239 QLVFSLGPYMD 249 (315)
T ss_pred eEEEeHHHHHH
Confidence 88888776654
No 252
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.11 E-value=0.00019 Score=66.92 Aligned_cols=181 Identities=22% Similarity=0.281 Sum_probs=111.6
Q ss_pred EEEEecCCCcccCCCCCCCCCcccee-CCcchHHHHHHHHHH----cC-CCEEEEEccc-ChHHHHHHHHHhhhccCcEE
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKA----VG-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI 75 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl-~g~pli~~~l~~l~~----~g-i~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i 75 (361)
+|+||||.|+||+. ..||.++|+ .++++++..++.+.. .+ .-..++.++. ..+++++++++|... ..++
T Consensus 59 vl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~-~~~v 134 (420)
T PF01704_consen 59 VLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL-DVDV 134 (420)
T ss_dssp EEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS-SCCE
T ss_pred EEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC-Ccce
Confidence 67899999999988 889999999 477888888877765 23 3466778887 568899999985321 1222
Q ss_pred EEecC-----------------C------C---CCCCchHHHHHH-----hhccCCCCCcEEEEeCCeeeccCHHHHHHH
Q 018060 76 ICSQE-----------------T------E---PLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVISEYPFAEMIEF 124 (361)
Q Consensus 76 ~~~~~-----------------~------~---~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~ 124 (361)
.+..| . . |.|.++-..... +.+...+-+++.+...|.+....=-.++.+
T Consensus 135 ~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~lG~ 214 (420)
T PF01704_consen 135 FFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVFLGY 214 (420)
T ss_dssp EEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHHHHH
T ss_pred EEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHHHHH
Confidence 22211 0 1 336665443332 333334445999999999443322347888
Q ss_pred HHHcCCceEEEEEEccCC-CCceeEEEcCCCCeEeeeeecCCC--------CCCCeEEEEEEEeCHhhHhhc
Q 018060 125 HKAHGGEASIMVTKVDEP-SKYGVVVMEESTGKVEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI 187 (361)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~~v~~~~ek~~~--------~~~~~~~~Giyi~~~~~l~~l 187 (361)
+.+++.++.+-+++...+ ..-|.+...+..-++.++.+-|.. ......+++-.+|+-.+++++
T Consensus 215 ~~~~~~~~~~evv~Kt~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~ 286 (420)
T PF01704_consen 215 MIEKNADFGMEVVPKTSPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRL 286 (420)
T ss_dssp HHHTT-SEEEEEEE-CSTTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHH
T ss_pred HHhccchhheeeeecCCCCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHH
Confidence 888888888877776444 344555433211245566554431 123467888889999988766
No 253
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.11 E-value=2.1e-05 Score=65.16 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=61.9
Q ss_pred CCCccceeCC--cchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060 21 VPKPLVEFAN--KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI 98 (361)
Q Consensus 21 ~pK~llpl~g--~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~ 98 (361)
.+|+|+++.| +|||+++++.+.. .+++++|+++.+.. + .. .++.+.. ......|...++..+.....
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~-~~~~iivv~~~~~~-~----~~----~~~~~i~-d~~~g~gpl~~~~~gl~~~~ 71 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQ-RCAPVFVMAAPGQP-L----PE----LPAPVLR-DELRGLGPLPATGRGLRAAA 71 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhh-cCCEEEEECCCCcc-c----cc----CCCCEec-cCCCCCCcHHHHHHHHHHHH
Confidence 4899999999 9999999998764 58999999986421 1 11 1233332 22333466666665554331
Q ss_pred CCCCCcEEEEeCCe-eec-cCHHHHHHHHHH
Q 018060 99 DDTGEPFFVLNSDV-ISE-YPFAEMIEFHKA 127 (361)
Q Consensus 99 ~~~~~~~lv~~~D~-~~~-~~l~~~~~~~~~ 127 (361)
....+.+++++||+ +.. ..++.+++.+..
T Consensus 72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 72 EAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred hcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 12345899999999 434 347777776543
No 254
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.00012 Score=67.57 Aligned_cols=179 Identities=25% Similarity=0.302 Sum_probs=112.6
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeC-CcchHHHHHHHHHHc----CC-CEEEEEcccChHHHHHHHHHhhhccC---c
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAV----GV-TEVVLAINYQPEVMLNFLKEFEAKLG---I 73 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~-g~pli~~~l~~l~~~----gi-~~i~vv~~~~~~~~~~~l~~~~~~~~---~ 73 (361)
+|.||||.|+||+. ..||.++++. |+++++.+.+.+..+ ++ -..++.++...++...++... ..++ .
T Consensus 108 vl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~-~Y~~~~k~ 183 (472)
T COG4284 108 VLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSN-DYFGLDKE 183 (472)
T ss_pred EEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhh-hhcCCCHH
Confidence 68899999999999 8999999998 999999998877654 32 255777777777777777651 1111 1
Q ss_pred EEEEecC-----------------------CCCCCCch---HHHH--HHhhccCCCCCcEEEEeCCeee-ccCHHHHHHH
Q 018060 74 KIICSQE-----------------------TEPLGTAG---PLAL--ARDKLIDDTGEPFFVLNSDVIS-EYPFAEMIEF 124 (361)
Q Consensus 74 ~i~~~~~-----------------------~~~~g~~~---al~~--~~~~~~~~~~~~~lv~~~D~~~-~~~l~~~~~~ 124 (361)
+|.+..| .-|.|.++ ++.. ..+.+...+-+.+.|.+.|.+. ..|+. ++..
T Consensus 184 ~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~-~lg~ 262 (472)
T COG4284 184 DIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLK-FLGF 262 (472)
T ss_pred HeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHH-HHHH
Confidence 1221111 12345543 3332 2233333455589999999933 23443 7777
Q ss_pred HHHcCCceEEEEEEc-cCCCCceeEE-EcCCCCeEeeeeecCCC----CCCC------eEE-EEEEEeCHhhHhhc
Q 018060 125 HKAHGGEASIMVTKV-DEPSKYGVVV-MEESTGKVEKFVEKPKL----FVGN------KIN-AGIYLLNPAVLDRI 187 (361)
Q Consensus 125 ~~~~~~~~~i~~~~~-~~~~~~~~v~-~~~~~~~v~~~~ek~~~----~~~~------~~~-~Giyi~~~~~l~~l 187 (361)
+..++.+.++-++.. .....-|++. .+.. -+++++.+-|.. +.+. ..+ .++++++.+.+...
T Consensus 263 ~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~-~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~ 337 (472)
T COG4284 263 MAETNYEYLMETTDKTKADEKVGILVTYDGK-LRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEA 337 (472)
T ss_pred HHhcCcceeEEEeecccccccceEEEEeCCc-eEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHhh
Confidence 778888777766654 3334456554 6665 688888877652 1111 223 67788877766543
No 255
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.04 E-value=8.6e-05 Score=75.36 Aligned_cols=206 Identities=12% Similarity=0.161 Sum_probs=109.5
Q ss_pred cEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEE--ccCCCCceeEEEcCCC-CeEeeeeecCCC--------CCCCeE
Q 018060 104 PFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK--VDEPSKYGVVVMEEST-GKVEKFVEKPKL--------FVGNKI 172 (361)
Q Consensus 104 ~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~~~~-~~v~~~~ek~~~--------~~~~~~ 172 (361)
.+||..||.+..++ +.+... ..++++..... .+-.+++|++..+.+. +++..+..||.. ...-+.
T Consensus 154 g~li~~gDv~~~f~--~~~~~~--~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~l~ 229 (974)
T PRK13412 154 HTLIASGDVYIRSE--QPLQDI--PEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLFLM 229 (974)
T ss_pred ceEEEecchhhhcc--ccccCC--CccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeEEE
Confidence 57888888744332 111111 11222222222 2334578888888642 577788888871 122368
Q ss_pred EEEEEEeCHhhHhhccCC------C----CccccchHHhHHhc----------CceEEEEe-cceEEEcCCHHHHHHHHH
Q 018060 173 NAGIYLLNPAVLDRIELR------P----TSIEKEVFPKIALE----------GKLFAMVL-PGFWMDIGQPRDYITGLR 231 (361)
Q Consensus 173 ~~Giyi~~~~~l~~l~~~------~----~~~~~d~l~~l~~~----------~~i~~~~~-~~~~~~i~t~~dy~~a~~ 231 (361)
++|+|+|+.+..+.|... + .++..||+..|-.. -++..... ++.++.++|-.+|+...-
T Consensus 230 D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~~~ 309 (974)
T PRK13412 230 DIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISSTL 309 (974)
T ss_pred eeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcCch
Confidence 999999999987765321 1 13334555443211 12333333 357889999988886432
Q ss_pred HHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCC-cEEeceEEccCcEECCCCEEeccE-E
Q 018060 232 LYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESG-VRLSRCTVMRGVRIKKHACISSSI-I 309 (361)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~-~~i~~~~i~~~~~i~~~~~i~~~~-i 309 (361)
.+.....-+. ...+.. +. ++ +.+++ -++++..++.++++ +.|.||.|+.++.||++|+|.+.- .
T Consensus 310 ~~q~~~~~~~-~i~~~~--~~------~~----~~~~v-~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~ 375 (974)
T PRK13412 310 AVQNLVTDQR-RIMHRK--VK------PH----PAMFV-QNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPEN 375 (974)
T ss_pred hHHHHhhhhh-hhhccc--cC------CC----CceEE-EeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEeccccc
Confidence 2222111100 000000 00 00 01122 37777777777776 346678888888888888887763 3
Q ss_pred cCCCEECCCcEEcCceEEC
Q 018060 310 GWHSTVGQWARVENMTILG 328 (361)
Q Consensus 310 ~~~~~ig~~~~i~~~~~ig 328 (361)
..+..|-+++.|.. +-+|
T Consensus 376 ~~~~~vP~~~ci~~-vpl~ 393 (974)
T PRK13412 376 SWNLDLPEGVCIDV-VPVG 393 (974)
T ss_pred ccceecCCCcEEEE-EEcC
Confidence 33455666665554 4443
No 256
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.01 E-value=5.6e-05 Score=70.81 Aligned_cols=80 Identities=18% Similarity=0.367 Sum_probs=49.7
Q ss_pred cEEEEeCCeeeccCHHHHHHHHHHcCCceEEEEEEc--cCCCCceeEEEcCCCC---------eEeeeeecCCC------
Q 018060 104 PFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTG---------KVEKFVEKPKL------ 166 (361)
Q Consensus 104 ~~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~~~~~---------~v~~~~ek~~~------ 166 (361)
-++|..+|+++...-...+. +. +..++++..+. +-...+|++.++.+ + .+.++..||..
T Consensus 55 Gv~V~s~D~vl~~~~~~~~~-~~--~~g~~~la~p~~~~~at~HGVfv~~~~-~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPDDPLID-WD--EPGVTALAHPSSLEYATNHGVFVLDRQ-GPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred ceEEEecccccccCccccCC-CC--CCCEEEEEeeCCHHHhcCCeEEEeCCC-CCccccchhhhHHHhhcCCCHHHHHhC
Confidence 68999999533322121221 11 23455555554 23457899999987 5 68888888861
Q ss_pred -----CCCCeEEEEEEEeCHhhHhhc
Q 018060 167 -----FVGNKINAGIYLLNPAVLDRI 187 (361)
Q Consensus 167 -----~~~~~~~~Giyi~~~~~l~~l 187 (361)
...-..++|++.|+.+..+.|
T Consensus 131 ~av~~~~~~~ldsG~~~~s~~~~e~L 156 (414)
T PF07959_consen 131 GAVLPDGNVLLDSGIVFFSSKAVESL 156 (414)
T ss_pred CcccCCCcccccccceeccHHHHHHH
Confidence 112246899999998877655
No 257
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.98 E-value=8.8e-06 Score=47.89 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=14.5
Q ss_pred EEcCCCEECCCcEEcCceEECCCeEECCceEE
Q 018060 308 IIGWHSTVGQWARVENMTILGEDVHVCDEIYS 339 (361)
Q Consensus 308 ~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i 339 (361)
.|++++.|++++.|.+++.||+++.|++++.+
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 34444444444444444444444444444444
No 258
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.92 E-value=3.9e-05 Score=63.45 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=54.4
Q ss_pred cEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcCceEECCCeEECCceEEcCcEE
Q 018060 273 VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 344 (361)
Q Consensus 273 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ig~~~~v~~~~~i~~~~i 344 (361)
.+...++.||.++.+.-.++++.+.+|+++.|.+.+++.++.|+.||++..+++++.++-||+.+.|++..+
T Consensus 17 ivv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~ 88 (277)
T COG4801 17 IVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLT 88 (277)
T ss_pred EEEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEE
Confidence 345556667777777777778888888888888888888888888888877788888888888887766444
No 259
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.77 E-value=0.00081 Score=65.53 Aligned_cols=143 Identities=17% Similarity=0.214 Sum_probs=93.8
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc-----------C-CCEEEEEccc-ChHHHHHHHHH
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV-----------G-VTEVVLAINY-QPEVMLNFLKE 66 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~-----------g-i~~i~vv~~~-~~~~~~~~l~~ 66 (361)
+|+||+|.|+||+- ..||.++|++ |+++++..++++.+. + .-..+|.++. .++.++++|++
T Consensus 131 vllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~ 207 (615)
T PLN02830 131 FVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLER 207 (615)
T ss_pred EEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHH
Confidence 68899999999998 7899999984 899999999887654 1 2357888887 46789999997
Q ss_pred hhhccC---cEEEEecC------------------------CCCCCCchHHHHHH-----hhccCCCCCcEEEEeCCeee
Q 018060 67 FEAKLG---IKIICSQE------------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVIS 114 (361)
Q Consensus 67 ~~~~~~---~~i~~~~~------------------------~~~~g~~~al~~~~-----~~~~~~~~~~~lv~~~D~~~ 114 (361)
.. .+| .++.++.| ..|.|.++-..... +.+...+-+++.+...|...
T Consensus 208 n~-~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L 286 (615)
T PLN02830 208 ND-YFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGL 286 (615)
T ss_pred CC-ccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchh
Confidence 32 222 12322221 12445554433332 23333444488999999933
Q ss_pred cc-CHHHHHHHHHHcCCceEEEEEEccCCCCceeEE
Q 018060 115 EY-PFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVV 149 (361)
Q Consensus 115 ~~-~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~ 149 (361)
.. ..-.++.++..++.++.+.+++......-|.+.
T Consensus 287 ~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi~ 322 (615)
T PLN02830 287 VFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAIA 322 (615)
T ss_pred hhcccHHHhHHHHhcCCceEEEEEECCCCcccceEE
Confidence 22 236688888888888887777664444455444
No 260
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=97.77 E-value=0.00094 Score=56.06 Aligned_cols=87 Identities=17% Similarity=0.311 Sum_probs=61.1
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEe
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN 109 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~ 109 (361)
-+||++++++.+.++++++++++++. +++.+++.. .++.+. .+.. .|...++..+.+.+... .+.+++++
T Consensus 29 ~~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v~~i--~~~~-~G~~~si~~al~~~~~~-~~~vlv~~ 98 (195)
T TIGR03552 29 ALAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGAPVL--RDPG-PGLNNALNAALAEAREP-GGAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCCEEE--ecCC-CCHHHHHHHHHHHhhcc-CCeEEEEe
Confidence 38999999999999877888888774 344444433 245443 3333 38899999998877432 23799999
Q ss_pred CCe--eeccCHHHHHHHHH
Q 018060 110 SDV--ISEYPFAEMIEFHK 126 (361)
Q Consensus 110 ~D~--~~~~~l~~~~~~~~ 126 (361)
+|+ +....++++++.+.
T Consensus 99 ~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 999 44456888887653
No 261
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.72 E-value=0.00025 Score=59.27 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=26.0
Q ss_pred cEEcCceEECCCeEECCceEEc-CcEEccCceeecccCCCccc
Q 018060 319 ARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV 360 (361)
Q Consensus 319 ~~i~~~~~ig~~~~v~~~~~i~-~~~i~~~~~v~~~~~~~~~~ 360 (361)
++|++++.||.++.|.+|++|. ++.+++++.+.+++|+++++
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv 167 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIV 167 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCccCCCeEE
Confidence 4455555555555555555553 55667777788888887664
No 262
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.71 E-value=6.1e-05 Score=62.11 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=15.7
Q ss_pred ecceEEcCCCEECC--CcEECCCcEECCCCEECCCcEE
Q 018060 252 VGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRL 287 (361)
Q Consensus 252 ~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i 287 (361)
++.+.||.+-.... +.+||+.++||.+|.|..++.+
T Consensus 152 hpaa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtl 189 (269)
T KOG4750|consen 152 HPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTL 189 (269)
T ss_pred cchhhcccceeeccccceeecceeEeccceeeecceee
Confidence 34444444433322 3344444444444444444444
No 263
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=96.23 E-value=0.046 Score=43.72 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=71.8
Q ss_pred ceeCCc-chHHHHHHHHHHc--CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060 26 VEFANK-PMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (361)
Q Consensus 26 lpl~g~-pli~~~l~~l~~~--gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~ 102 (361)
+|.-|. ..|..+|+.+.+. ...+|+|+-+...+...+.++++.. ....+.+.......|.+.+...+.+.. .++
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a--~~~ 80 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHA--KGE 80 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH----SS
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccccccccccccccccc--cee
Confidence 455555 4889999988887 3567777666665667777776543 233444455554557788888888887 333
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHHcCCceEEEE
Q 018060 103 EPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMV 136 (361)
Q Consensus 103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i~~ 136 (361)
.++++..|.+...+ ++.+++.+.+.+.++.+..
T Consensus 81 -~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 81 -YILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp -EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred -EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999999977777 8999999888766554443
No 264
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.00 E-value=0.12 Score=40.36 Aligned_cols=97 Identities=21% Similarity=0.210 Sum_probs=66.1
Q ss_pred eeCC-cchHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCC
Q 018060 27 EFAN-KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (361)
Q Consensus 27 pl~g-~pli~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~ 103 (361)
|..| .+++.++++++.+.. ..+++++.+...+...+.+.+.... ...+.........|.+.++..+.... . .+
T Consensus 4 ~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~d 79 (156)
T cd00761 4 PAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAA--R-GE 79 (156)
T ss_pred eecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHh--c-CC
Confidence 4433 479999999999987 7788888888766777777664322 12233344455567888888888776 2 33
Q ss_pred cEEEEeCCeeeccC-HHHHHHHHHH
Q 018060 104 PFFVLNSDVISEYP-FAEMIEFHKA 127 (361)
Q Consensus 104 ~~lv~~~D~~~~~~-l~~~~~~~~~ 127 (361)
.++++.+|.....+ +..++..+..
T Consensus 80 ~v~~~d~D~~~~~~~~~~~~~~~~~ 104 (156)
T cd00761 80 YILFLDADDLLLPDWLERLVAELLA 104 (156)
T ss_pred EEEEECCCCccCccHHHHHHHHHhc
Confidence 89999999977766 5555444433
No 265
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=95.67 E-value=0.024 Score=53.31 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=57.3
Q ss_pred cCceEEEEe-cceEEEcCCHHHHHHHHHHHHHhhhhcccccccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECC
Q 018060 205 EGKLFAMVL-PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVES 283 (361)
Q Consensus 205 ~~~i~~~~~-~~~~~~i~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~ 283 (361)
..++..... ++.+..++|..+|++-...- ..+ .+.......... .....+.+++.| -+|++..++.+|+
T Consensus 226 ~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~-~~l------~~~~~~~~~~~~--~~~~~~~~~~~V-inSil~~~~~vg~ 295 (414)
T PF07959_consen 226 GTPLNVVPLPNGKFYHFGTSREYLEHLTSD-SEL------GIMRRKFSHSPA--TTPSDSEASSCV-INSILEGGVSVGP 295 (414)
T ss_pred hccccccccCCceEEEecCCHHHHHhhccC-ccc------ccceeeeecccc--ccccccCCCeeE-EEeEecCCceECC
Confidence 334444444 47888999987776654211 000 011111111111 112233444444 3888888888888
Q ss_pred CcEEeceEEccCcEECCCCEEeccEEcCC
Q 018060 284 GVRLSRCTVMRGVRIKKHACISSSIIGWH 312 (361)
Q Consensus 284 ~~~i~~~~i~~~~~i~~~~~i~~~~i~~~ 312 (361)
++.|.+|.++.++.||++|.|.++-+...
T Consensus 296 ~svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 296 GSVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred CCEEEeeecCCCCEECCCCEEECCccccc
Confidence 88888888888888888888887655444
No 266
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=95.49 E-value=2 Score=39.52 Aligned_cols=130 Identities=23% Similarity=0.284 Sum_probs=75.2
Q ss_pred EEEEecCCCcccCCCCCCCCCcccee-CCcchHHHH---HHHHHHc-CCC-EEEEEcccC-hHHHHHHHHHhhhccCcEE
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQ---IEALKAV-GVT-EVVLAINYQ-PEVMLNFLKEFEAKLGIKI 75 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl-~g~pli~~~---l~~l~~~-gi~-~i~vv~~~~-~~~~~~~l~~~~~~~~~~i 75 (361)
.+=|-+|.|+-|+. ..||.+.++ .|.+.++-+ ++.|.+. +++ ..++.-+.. .+....++++|... .+++
T Consensus 106 vlKLNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~-kv~i 181 (498)
T KOG2638|consen 106 VLKLNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGS-KVDI 181 (498)
T ss_pred EEEecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCC-ceeE
Confidence 34477999999999 899999999 477766655 5555433 333 445555553 56778888875422 2333
Q ss_pred EEecC-------------------------CCCCCCchHHHHHH------hhccCCCCCcEEEEeCCeeecc-CHHHHHH
Q 018060 76 ICSQE-------------------------TEPLGTAGPLALAR------DKLIDDTGEPFFVLNSDVISEY-PFAEMIE 123 (361)
Q Consensus 76 ~~~~~-------------------------~~~~g~~~al~~~~------~~~~~~~~~~~lv~~~D~~~~~-~l~~~~~ 123 (361)
....| ..|.|.++-..... ..+.+ +.|.++|.+.|.+... ||. +++
T Consensus 182 ~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaq-GkEylFVSNiDNLGAtvDL~-ILn 259 (498)
T KOG2638|consen 182 KTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQ-GKEYLFVSNIDNLGATVDLN-ILN 259 (498)
T ss_pred EEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhC-CceEEEEeccccccceeeHH-HHH
Confidence 22211 11334443332221 23443 4458999999996653 554 555
Q ss_pred HHHHcCCceEEEEEE
Q 018060 124 FHKAHGGEASIMVTK 138 (361)
Q Consensus 124 ~~~~~~~~~~i~~~~ 138 (361)
.....+.+-.+-++.
T Consensus 260 ~~i~~~~ey~MEvTd 274 (498)
T KOG2638|consen 260 HVINNNIEYLMEVTD 274 (498)
T ss_pred HHhcCCCceEEEecc
Confidence 555555554444444
No 267
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=94.47 E-value=0.65 Score=36.99 Aligned_cols=101 Identities=24% Similarity=0.259 Sum_probs=65.1
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060 26 VEFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (361)
Q Consensus 26 lpl~g~-pli~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~ 102 (361)
+|.-|. ..|..+|+.+.+.. ..+++|+-+...+...+.+.++.......+.+.......|.+.+...+.+.. ..
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~- 79 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KG- 79 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CC-
Confidence 344454 48888899988874 4567776666555566666654332222344444555668888888888776 33
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 103 EPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
+.++++.+|.....+ +.+++..+.+..
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 107 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFADP 107 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhccCC
Confidence 389999999966655 677755555443
No 268
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=94.38 E-value=0.77 Score=39.64 Aligned_cols=107 Identities=9% Similarity=0.119 Sum_probs=67.6
Q ss_pred ceeCCcc-hHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCC
Q 018060 26 VEFANKP-MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD 100 (361)
Q Consensus 26 lpl~g~p-li~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~ 100 (361)
+|.-|.. .|..+|+++.+... -+|+|+.....+...+.++++......++.........|.+.++..+.+.. .
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~ 84 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--R 84 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--C
Confidence 3444443 77888888877532 246666565556666667665322234555554444457778888888765 3
Q ss_pred CCCcEEEEeCCeeeccC-HHHHHHHHHHcCCceEEE
Q 018060 101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM 135 (361)
Q Consensus 101 ~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i~ 135 (361)
+ |.++++.+|.....+ +.++++.+.+.+.+..++
T Consensus 85 g-d~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 85 G-EYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred C-CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 3 489999999977766 788888876543444433
No 269
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.25 E-value=0.92 Score=37.68 Aligned_cols=100 Identities=20% Similarity=0.220 Sum_probs=64.6
Q ss_pred cceeCCcc---hHHHHHHHHHHcC--CCEEEEEcccC-hHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060 25 LVEFANKP---MILHQIEALKAVG--VTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI 98 (361)
Q Consensus 25 llpl~g~p---li~~~l~~l~~~g--i~~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~ 98 (361)
++|.-|.. .|..+|+++.+.. ..+++|+-... .+...+.++++..+.++.+ .......|.+.+.-.+....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~--i~~~~n~G~~~a~N~g~~~a- 79 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKV--VPLEKNRGLGKALNEGLKHC- 79 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEE--EEcCccccHHHHHHHHHHhc-
Confidence 35665543 8999999998864 24665554443 5667777766654444333 33333457778777777655
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
. .+.++++.+|.+...+ ++.+++...++.
T Consensus 80 -~-gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~ 109 (201)
T cd04195 80 -T-YDWVARMDTDDISLPDRFEKQLDFIEKNP 109 (201)
T ss_pred -C-CCEEEEeCCccccCcHHHHHHHHHHHhCC
Confidence 3 3488999999976665 788888775543
No 270
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.78 E-value=1.4 Score=34.92 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=64.2
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060 26 VEFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (361)
Q Consensus 26 lpl~g~-pli~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~ 102 (361)
+|.-|+ .++..+++++.+.. ..+++|+.+...+...+.+.++.. .+.+.......|.+.+...+.+.. ..
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~--~~- 75 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREA--KG- 75 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhC--CC-
Confidence 344444 58999999998763 457777776665666666665322 233344445568888888888777 33
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 103 EPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
+.++++..|.....+ +..+++.+.+.+
T Consensus 76 ~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 76 DYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred CEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 388899999976665 777877655543
No 271
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=93.19 E-value=0.95 Score=38.10 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHc------CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcE
Q 018060 32 PMILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF 105 (361)
Q Consensus 32 pli~~~l~~l~~~------gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~ 105 (361)
..|..+|+.+.+. ...+++|+-+...+...+.++++....+..+.+.......|.+.++..+.... .+ |.+
T Consensus 10 ~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a--~g-d~i 86 (211)
T cd04188 10 KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAA--RG-DYI 86 (211)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHh--cC-CEE
Confidence 3566667666553 23467766555555566666655433332234444444568888888888877 33 489
Q ss_pred EEEeCCeeeccC-HHHHHHHHHHcCCceEE
Q 018060 106 FVLNSDVISEYP-FAEMIEFHKAHGGEASI 134 (361)
Q Consensus 106 lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i 134 (361)
+++.+|.....+ +.++++.....+.++++
T Consensus 87 ~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 87 LFADADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 999999966554 78888775554444433
No 272
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=93.09 E-value=1.5 Score=36.02 Aligned_cols=105 Identities=19% Similarity=0.280 Sum_probs=61.8
Q ss_pred CeEEEEec---CCCcccCCCCCC-CCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEE
Q 018060 1 MKALILVG---GFGTRLRPLTLS-VPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKII 76 (361)
Q Consensus 1 m~avIla~---G~g~rl~~lt~~-~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~ 76 (361)
|++||+-. +.=+||.|.-.. .-+-++ .-||..++..+... +.+|.|++.... +..+-.+ .++.
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpde~--~~~~a~~------~~vl 67 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPDEE--VLVPATK------LEVL 67 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCChH--hhhhccc------ceee
Confidence 78888765 445777774221 111111 24888888888765 688988888632 2111111 1221
Q ss_pred EecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHH
Q 018060 77 CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFH 125 (361)
Q Consensus 77 ~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~ 125 (361)
.. + +.-.++.++.+.+... +.++++++|+ +...+++++++..
T Consensus 68 --~d--~-dLN~Ai~aa~~~~~~p--~~v~vvmaDLPLl~~~~i~~~~~~~ 111 (210)
T COG1920 68 --AD--P-DLNTAINAALDEIPLP--SEVIVVMADLPLLSPEHIERALSAA 111 (210)
T ss_pred --ec--c-chHHHHHHHHhhCCCC--cceEEEecccccCCHHHHHHHHHhc
Confidence 11 1 2446677777776432 3699999999 4555688887763
No 273
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=92.81 E-value=2.2 Score=34.69 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=65.5
Q ss_pred eeCCcc-hHHHHHHHHHHc----CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCC
Q 018060 27 EFANKP-MILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT 101 (361)
Q Consensus 27 pl~g~p-li~~~l~~l~~~----gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~ 101 (361)
|.-+.+ .+..+|+.+.+. ...+++|+-+...+...+.++++..... .+.+.......|.+.+...+..... +
T Consensus 4 ~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~--g 80 (185)
T cd04179 4 PAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAAR--G 80 (185)
T ss_pred cccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhc--C
Confidence 444443 677888888776 2567777766655555666655433322 2233444445688888888887773 3
Q ss_pred CCcEEEEeCCeeeccC-HHHHHHHHHHcCCceEE
Q 018060 102 GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI 134 (361)
Q Consensus 102 ~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i 134 (361)
|.++++.+|.....+ ++++++...+.+.++..
T Consensus 81 -d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 81 -DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 489999999866555 78888875555544433
No 274
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=92.64 E-value=2.7 Score=36.33 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=67.7
Q ss_pred CCCCCC--ccceeCCcc-hHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHH
Q 018060 18 TLSVPK--PLVEFANKP-MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPL 90 (361)
Q Consensus 18 t~~~pK--~llpl~g~p-li~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al 90 (361)
....|+ -++|.-|.. .|..+|+.+.+... -+++|+.+...+...+.++++... + +.+.......|.+.++
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~--v~~i~~~~~~g~~~a~ 101 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK-G--VKLLRFPERRGKAAAL 101 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC-c--EEEEEcCCCCChHHHH
Confidence 344454 455665654 78888888876532 257777666656677777665433 3 3333444455778888
Q ss_pred HHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018060 91 ALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHK 126 (361)
Q Consensus 91 ~~~~~~~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~ 126 (361)
..+..... + |.++++.+|.+...+ ++++++...
T Consensus 102 n~gi~~a~--~-d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 102 NRALALAT--G-EIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred HHHHHHcC--C-CEEEEEccccCcCHHHHHHHHHHhc
Confidence 88887763 3 489999999977665 788887764
No 275
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.16 E-value=2.1 Score=35.70 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=62.8
Q ss_pred ceeCCcc-hHHHHHHHHHHcCC--CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060 26 VEFANKP-MILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (361)
Q Consensus 26 lpl~g~p-li~~~l~~l~~~gi--~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~ 102 (361)
+|.-|.+ .|..+|+++.+... -+++|+-+...+...+.++++..+.+..+.+.......|.+.++..+.... . .
T Consensus 4 Ip~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~--~-g 80 (214)
T cd04196 4 MATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA--D-G 80 (214)
T ss_pred EEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhC--C-C
Confidence 3444444 78888998877642 356666555445555666665444333444455555567777777776554 3 3
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 103 EPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
+.++++..|.....+ +..+++...+..
T Consensus 81 ~~v~~ld~Dd~~~~~~l~~~~~~~~~~~ 108 (214)
T cd04196 81 DYVFFCDQDDIWLPDKLERLLKAFLKDD 108 (214)
T ss_pred CEEEEECCCcccChhHHHHHHHHHhcCC
Confidence 488899989866655 788887744433
No 276
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=92.00 E-value=0.44 Score=44.61 Aligned_cols=62 Identities=26% Similarity=0.368 Sum_probs=46.9
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeC---CcchHHHHHHHHHHc----------C-CCEEEEEccc-ChHHHHHHHHH
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV----------G-VTEVVLAINY-QPEVMLNFLKE 66 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~---g~pli~~~l~~l~~~----------g-i~~i~vv~~~-~~~~~~~~l~~ 66 (361)
.++++|+|.|+|++- ..||.+.+++ |+.+++...+++... + --..+|.++. -.+..+++++.
T Consensus 99 a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~ 175 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFES 175 (477)
T ss_pred eEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhh
Confidence 378999999999988 8999999998 667988887765432 2 1244777777 45678888875
No 277
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=91.72 E-value=3.8 Score=34.81 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=63.0
Q ss_pred ceeCCc--chHHHHHHHHHHcCCC----EEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCC-CchHHHHHHhhcc
Q 018060 26 VEFANK--PMILHQIEALKAVGVT----EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLG-TAGPLALARDKLI 98 (361)
Q Consensus 26 lpl~g~--pli~~~l~~l~~~gi~----~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g-~~~al~~~~~~~~ 98 (361)
+|.-|. .+++.+|+.+.+.... +++|+-+...+...+.++++.....+.+... ....| .+.++..+.+..
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~n~~~~~a- 83 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTR--PDNRHAKAGNLNNALAHT- 83 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEe--CCCCCCcHHHHHHHHHhC-
Confidence 455554 3788999999886533 6777776666778888877654333333322 22223 355566666655
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHHc
Q 018060 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAH 128 (361)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~ 128 (361)
.+ |.++++.+|.+...+ +..+++...++
T Consensus 84 -~~-d~i~~lD~D~~~~~~~l~~l~~~~~~~ 112 (234)
T cd06421 84 -TG-DFVAILDADHVPTPDFLRRTLGYFLDD 112 (234)
T ss_pred -CC-CEEEEEccccCcCccHHHHHHHHHhcC
Confidence 33 489999999977766 78888877653
No 278
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=91.14 E-value=3.9 Score=33.45 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=61.7
Q ss_pred ceeCCc-chHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhcc--
Q 018060 26 VEFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI-- 98 (361)
Q Consensus 26 lpl~g~-pli~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~-- 98 (361)
+|.-|. ..|..+|+++.+... .+|+|+.....+...+.++++ +..+.........|.+.++..+.....
T Consensus 3 Ip~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~a~~~ 78 (183)
T cd06438 3 IPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA----GATVLERHDPERRGKGYALDFGFRHLLNL 78 (183)
T ss_pred EeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc----CCeEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 455444 478888888877543 356777666656666666553 233333333334467777777776652
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHH
Q 018060 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKA 127 (361)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~ 127 (361)
....|.++++.+|.....+ +..+++.+.+
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 1233489999999977766 7888877654
No 279
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.10 E-value=2.6 Score=35.05 Aligned_cols=93 Identities=14% Similarity=0.216 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEe
Q 018060 32 PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN 109 (361)
Q Consensus 32 pli~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~ 109 (361)
..|..+|+.+.+.. ..+++|+-+...+...+.++++....+ +.+.......|.+.++-.+.+.....+.|.++++.
T Consensus 10 ~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld 87 (202)
T cd04185 10 DLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMD 87 (202)
T ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCCEEEEeC
Confidence 47888999987763 246777666656667777776544333 33344444556666666665544222344888999
Q ss_pred CCeeeccC-HHHHHHHHH
Q 018060 110 SDVISEYP-FAEMIEFHK 126 (361)
Q Consensus 110 ~D~~~~~~-l~~~~~~~~ 126 (361)
.|.....+ ++++++...
T Consensus 88 ~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 88 DDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCCcChHHHHHHHHHHh
Confidence 99977766 677777765
No 280
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=90.51 E-value=4.5 Score=34.09 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=63.0
Q ss_pred ceeCCc-chHHHHHHHHHHcC---CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCC
Q 018060 26 VEFANK-PMILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT 101 (361)
Q Consensus 26 lpl~g~-pli~~~l~~l~~~g---i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~ 101 (361)
+|.-|. ..|..+|+.+.+.- ..+++||-+...+...+.++++..... .+.+.......|.+.++..+.+... +
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~--g 79 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAAR--G 79 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcC--C
Confidence 344444 36788888887642 346666655544555555555433222 2233334445677888888887763 3
Q ss_pred CCcEEEEeCCeeeccC-HHHHHHHHHHcCCceE
Q 018060 102 GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS 133 (361)
Q Consensus 102 ~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~ 133 (361)
|.++++.+|.....+ +..+++....++.+++
T Consensus 80 -d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 80 -DVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred -CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 488899999866554 7888887555554443
No 281
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=90.19 E-value=3.5 Score=35.36 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060 32 PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 32 pli~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv 107 (361)
+.+..+|+.+.+... .+++|+-+...+...+.++++... ...+.+... ...|.+.++..+.+.. . .|.+++
T Consensus 13 ~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~-~~~~~~~a~N~g~~~a--~-~d~v~~ 87 (249)
T cd02525 13 KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLIDN-PKRIQSAGLNIGIRNS--R-GDIIIR 87 (249)
T ss_pred hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEeC-CCCCchHHHHHHHHHh--C-CCEEEE
Confidence 477888998877643 367777666666666676665433 122333333 2346667777777665 2 348899
Q ss_pred EeCCeeeccC-HHHHHHHHHHcCCc
Q 018060 108 LNSDVISEYP-FAEMIEFHKAHGGE 131 (361)
Q Consensus 108 ~~~D~~~~~~-l~~~~~~~~~~~~~ 131 (361)
+.+|.....+ ++++++.+.+.+..
T Consensus 88 lD~D~~~~~~~l~~~~~~~~~~~~~ 112 (249)
T cd02525 88 VDAHAVYPKDYILELVEALKRTGAD 112 (249)
T ss_pred ECCCccCCHHHHHHHHHHHhcCCCC
Confidence 9999976655 78888766554443
No 282
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=90.01 E-value=4.5 Score=34.50 Aligned_cols=100 Identities=21% Similarity=0.287 Sum_probs=58.6
Q ss_pred ceeCCc-c-hHHHHHHHHHHcCC--CEEEEEcccChHH-HHHHHHHhhhccCcEEEEecCCCCCCC-chHHHHHHhhccC
Q 018060 26 VEFANK-P-MILHQIEALKAVGV--TEVVLAINYQPEV-MLNFLKEFEAKLGIKIICSQETEPLGT-AGPLALARDKLID 99 (361)
Q Consensus 26 lpl~g~-p-li~~~l~~l~~~gi--~~i~vv~~~~~~~-~~~~l~~~~~~~~~~i~~~~~~~~~g~-~~al~~~~~~~~~ 99 (361)
+|.-|. | +|..+|+.+.+... -+++|+-+...+. ..+.++++..+.+.++.+.......|. ++++-.+.+....
T Consensus 4 ip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~ 83 (236)
T cd06435 4 VPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAP 83 (236)
T ss_pred EeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCC
Confidence 455565 3 78999999988753 3666665543322 222333322222233433333333453 6777777776632
Q ss_pred CCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018060 100 DTGEPFFVLNSDVISEYP-FAEMIEFHK 126 (361)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-l~~~~~~~~ 126 (361)
. .|.++++.+|.....+ +.++++...
T Consensus 84 ~-~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 84 D-AEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred C-CCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 2 3489999999966665 788887764
No 283
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.92 E-value=4.5 Score=33.13 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHcCCC--EEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEe
Q 018060 32 PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN 109 (361)
Q Consensus 32 pli~~~l~~l~~~gi~--~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~ 109 (361)
..|+.+|+++.+.... +|+|+-+...+...+.++++... +.+.......|.+.++..+.+.. . .+.++++.
T Consensus 11 ~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~~a--~-~~~v~~ld 83 (202)
T cd06433 11 ETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----ITYWISEPDKGIYDAMNKGIALA--T-GDIIGFLN 83 (202)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----cEEEEecCCcCHHHHHHHHHHHc--C-CCEEEEeC
Confidence 4788999999876544 56666444445566666665332 12222334457788887777766 2 34889999
Q ss_pred CCeeeccC-HHHHHHHHHHcC
Q 018060 110 SDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 110 ~D~~~~~~-l~~~~~~~~~~~ 129 (361)
+|.....+ +..++....+.+
T Consensus 84 ~D~~~~~~~~~~~~~~~~~~~ 104 (202)
T cd06433 84 SDDTLLPGALLAVVAAFAEHP 104 (202)
T ss_pred CCcccCchHHHHHHHHHHhCC
Confidence 99955544 777775554443
No 284
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=89.57 E-value=5.5 Score=32.97 Aligned_cols=97 Identities=11% Similarity=0.176 Sum_probs=54.0
Q ss_pred ceeCC-cchHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCCc---hHHHHHHhhcc
Q 018060 26 VEFAN-KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTA---GPLALARDKLI 98 (361)
Q Consensus 26 lpl~g-~pli~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~~---~al~~~~~~~~ 98 (361)
+|.-| .+.|...|+++.+.. --+++||.+...+...+.++++.... ...+.+.......|.. .++..+.+..
T Consensus 7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a- 85 (196)
T cd02520 7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEA- 85 (196)
T ss_pred EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhC-
Confidence 34433 346788888887653 34666666665555555555543322 2333333333233432 3343444444
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018060 99 DDTGEPFFVLNSDVISEYP-FAEMIEFH 125 (361)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~ 125 (361)
. .|.++++.+|.....+ +.++++..
T Consensus 86 -~-~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 86 -R-YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred -C-CCEEEEECCCceEChhHHHHHHHHh
Confidence 2 3488999999976655 77777764
No 285
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=89.52 E-value=5.8 Score=35.48 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=59.1
Q ss_pred chHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHH-hhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEE
Q 018060 32 PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKE-FEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (361)
Q Consensus 32 pli~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~-~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~l 106 (361)
..|..+|+++.+.-- .+|+||-+...+.....+.+ +.......+.+.......|.+.+.-.+.... .+ |.++
T Consensus 12 ~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A--~g-d~i~ 88 (299)
T cd02510 12 STLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAA--TG-DVLV 88 (299)
T ss_pred HHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHc--cC-CEEE
Confidence 388888998876531 36777766544444444432 1111112333344444557777777777665 33 4899
Q ss_pred EEeCCeeeccC-HHHHHHHHHHcCC
Q 018060 107 VLNSDVISEYP-FAEMIEFHKAHGG 130 (361)
Q Consensus 107 v~~~D~~~~~~-l~~~~~~~~~~~~ 130 (361)
++.+|.....+ +.++++.+.+.+.
T Consensus 89 fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 89 FLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred EEeCCcccCccHHHHHHHHHHhCCC
Confidence 99999966655 8999988876544
No 286
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=89.42 E-value=0.42 Score=40.53 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=49.8
Q ss_pred CeEEEEecCCC---cccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhh-ccCcEEE
Q 018060 1 MKALILVGGFG---TRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA-KLGIKII 76 (361)
Q Consensus 1 m~avIla~G~g---~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~-~~~~~i~ 76 (361)
|++||+.-..+ |||.+.- +..--.=.-+.|+..+++.+.. ++ ++|++... .+.. +.. ..++.+.
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L---~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~--~v~~----~a~~~~g~~vl 68 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVL---SPEEREALALAMLRDVLAALRA--VD-VVVVSRDP--EVAA----LARARLGAEVL 68 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS----HHHHHHHHHHHHHHHHHHHHH---S-EEEEES----S-TT----TTT---SSEEE
T ss_pred CeEEEEcCCCCccccccCccC---CHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccch--hhhh----hhhhccCCeEe
Confidence 88999987655 7776631 1110111124589999998877 66 66666542 1111 111 3366654
Q ss_pred EecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHH
Q 018060 77 CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFH 125 (361)
Q Consensus 77 ~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~~~~~l~~~~~~~ 125 (361)
... ..|.=.++..+.... . .++++++++|+ +...+++.+++..
T Consensus 69 ~d~---~~gLN~Al~~a~~~~--~-~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 69 PDP---GRGLNAALNAALAAA--G-DDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp E------S-HHHHHHHHHH-H-----S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred cCC---CCCHHHHHHHHHhcc--C-CCceEEeecCCccCCHHHHHHHHhcc
Confidence 332 346666666663222 2 34899999999 6667788888764
No 287
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=89.21 E-value=4.9 Score=32.65 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=49.5
Q ss_pred CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018060 47 TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFH 125 (361)
Q Consensus 47 ~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~ 125 (361)
.+|+|+-+...+...+.++++..... .+.+.......|.+.++..+..... + |.++++.+|.....+ ++.+++..
T Consensus 30 ~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g~~~a~--~-d~i~~~D~D~~~~~~~l~~l~~~~ 105 (181)
T cd04187 30 YEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLSRNFGQQAALLAGLDHAR--G-DAVITMDADLQDPPELIPEMLAKW 105 (181)
T ss_pred eEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEecCCCCcHHHHHHHHHhcC--C-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 46777666655555556665533222 2333333345588888888877663 3 489999999966554 78888763
Q ss_pred HHcCCce
Q 018060 126 KAHGGEA 132 (361)
Q Consensus 126 ~~~~~~~ 132 (361)
+++.++
T Consensus 106 -~~~~~~ 111 (181)
T cd04187 106 -EEGYDV 111 (181)
T ss_pred -hCCCcE
Confidence 334443
No 288
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=88.78 E-value=6.5 Score=33.43 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCC
Q 018060 32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 111 (361)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D 111 (361)
+.|..+|+.+.+....+++|+.+...+...+.+....+...+.+. . ....|...++..+.... . .|.++++.+|
T Consensus 14 ~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~--~-~~~~g~~~a~n~g~~~a--~-~d~v~~lD~D 87 (235)
T cd06434 14 DVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGGIFVI--T-VPHPGKRRALAEGIRHV--T-TDIVVLLDSD 87 (235)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCCcEEEE--e-cCCCChHHHHHHHHHHh--C-CCEEEEECCC
Confidence 589999999988766678777777666666665432222222232 2 22346677776666665 2 3489999999
Q ss_pred eeeccC-HHHHHHHHH
Q 018060 112 VISEYP-FAEMIEFHK 126 (361)
Q Consensus 112 ~~~~~~-l~~~~~~~~ 126 (361)
.....+ ++.+++.+.
T Consensus 88 ~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 88 TVWPPNALPEMLKPFE 103 (235)
T ss_pred ceeChhHHHHHHHhcc
Confidence 977766 788888776
No 289
>PRK11204 N-glycosyltransferase; Provisional
Probab=88.54 E-value=5.3 Score=37.73 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=65.1
Q ss_pred cceeCCc-chHHHHHHHHHHcCC--CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCC
Q 018060 25 LVEFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT 101 (361)
Q Consensus 25 llpl~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~ 101 (361)
++|.-|. ..+..+++++.+... .+++|+-+...+...+.++++..+.. ++.+....+..|-+.++..+.+.. ..
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~~n~Gka~aln~g~~~a--~~ 135 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLAENQGKANALNTGAAAA--RS 135 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcCCCCCHHHHHHHHHHHc--CC
Confidence 4455555 588999999887642 36676666555556666655433322 233344344457788887777765 33
Q ss_pred CCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 102 GEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 102 ~~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
|.++++.+|.+...+ +.++++.+.+.+
T Consensus 136 -d~i~~lDaD~~~~~d~L~~l~~~~~~~~ 163 (420)
T PRK11204 136 -EYLVCIDGDALLDPDAAAYMVEHFLHNP 163 (420)
T ss_pred -CEEEEECCCCCCChhHHHHHHHHHHhCC
Confidence 489999999977666 788888876544
No 290
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=87.18 E-value=6.6 Score=31.78 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=57.1
Q ss_pred ceeCCcc-hHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC-CCCCCchHHHHHHhhccCCC
Q 018060 26 VEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET-EPLGTAGPLALARDKLIDDT 101 (361)
Q Consensus 26 lpl~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~-~~~g~~~al~~~~~~~~~~~ 101 (361)
+|.-|.+ .++.+|+++.+.- ..+++|+-+...+...+.++++.......+...... ...+.+.+...+.+.. .+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a--~g 80 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA--KG 80 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh--cC
Confidence 3444443 7889999987752 357777666666666677766544323333323222 2223444555555554 33
Q ss_pred CCcEEEEeCCeeeccC-HHHHHHHH
Q 018060 102 GEPFFVLNSDVISEYP-FAEMIEFH 125 (361)
Q Consensus 102 ~~~~lv~~~D~~~~~~-l~~~~~~~ 125 (361)
+.++++.+|.+...+ +.++++.+
T Consensus 81 -~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 81 -DYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred -CEEEEEcCCcccCHHHHHHHHHHh
Confidence 489999999977665 67777665
No 291
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=86.26 E-value=6.1 Score=34.06 Aligned_cols=104 Identities=12% Similarity=0.159 Sum_probs=61.3
Q ss_pred eeCCc-chHHHHHHHHHHc----CCCEEEEEcccChHHHHHHHHHhhhccC-cEEEEecCCCCCCCchHHHHHHhhccCC
Q 018060 27 EFANK-PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEAKLG-IKIICSQETEPLGTAGPLALARDKLIDD 100 (361)
Q Consensus 27 pl~g~-pli~~~l~~l~~~----gi~~i~vv~~~~~~~~~~~l~~~~~~~~-~~i~~~~~~~~~g~~~al~~~~~~~~~~ 100 (361)
|.-|. ..|..+++.+.+. .--+|+|+-+...+...+.++++....+ ..+.........|.+.++..+.... .
T Consensus 16 p~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a--~ 93 (243)
T PLN02726 16 PTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHA--S 93 (243)
T ss_pred ccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHc--C
Confidence 33343 4566666666442 1236666655555556666665443322 2343344444457777887777665 3
Q ss_pred CCCcEEEEeCCeeeccC-HHHHHHHHHHcCCceE
Q 018060 101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS 133 (361)
Q Consensus 101 ~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~ 133 (361)
+ +.++++.+|.....+ +.++++...+.+.+++
T Consensus 94 g-~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 126 (243)
T PLN02726 94 G-DFVVIMDADLSHHPKYLPSFIKKQRETGADIV 126 (243)
T ss_pred C-CEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEE
Confidence 3 389999999966554 7888887766555443
No 292
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.09 E-value=7.9 Score=32.57 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=57.3
Q ss_pred ceeCCcc-hHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHH-HhhhccCcEEEEecCC--CCCCCchHHHHHHhhc
Q 018060 26 VEFANKP-MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLK-EFEAKLGIKIICSQET--EPLGTAGPLALARDKL 97 (361)
Q Consensus 26 lpl~g~p-li~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~-~~~~~~~~~i~~~~~~--~~~g~~~al~~~~~~~ 97 (361)
+|.-|.+ .|..+|+.+.+... .+|+|+-+...+...+.+. .. ...+..+...... ...|...++..+....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~-~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~ 81 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAA-AKPNFQLKILNNSRVSISGKKNALTTAIKAA 81 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHH-hCCCcceEEeeccCcccchhHHHHHHHHHHh
Confidence 4555544 78899998876632 3566665554444444443 11 1112233333322 2334555555555544
Q ss_pred cCCCCCcEEEEeCCeeeccC-HHHHHHHHHHcCC
Q 018060 98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG 130 (361)
Q Consensus 98 ~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~ 130 (361)
..|.++++.+|.+...+ ++++++.+.+.+.
T Consensus 82 ---~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 82 ---KGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred ---cCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 23489999999977766 7888887665543
No 293
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=85.67 E-value=1.8 Score=44.92 Aligned_cols=68 Identities=6% Similarity=-0.014 Sum_probs=52.4
Q ss_pred CcEEeceEEccCcEECCCCE-EeccEEcCCCEECCCcEEcCceE-ECCCeEECCceEEcCcEEccCceeec
Q 018060 284 GVRLSRCTVMRGVRIKKHAC-ISSSIIGWHSTVGQWARVENMTI-LGEDVHVCDEIYSNGGVVLPHKEIKS 352 (361)
Q Consensus 284 ~~~i~~~~i~~~~~i~~~~~-i~~~~i~~~~~ig~~~~i~~~~~-ig~~~~v~~~~~i~~~~i~~~~~v~~ 352 (361)
.+.+.||++..++.++++.. |++|.|+.+..||+++.|.+ +. ..-+..|++++.+....+.....+.+
T Consensus 331 ~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisg-v~~~~~~~~vP~~~ci~~vpl~~~~~v~r 400 (974)
T PRK13412 331 AMFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITG-VPENSWNLDLPEGVCIDVVPVGDRGFVAR 400 (974)
T ss_pred ceEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEec-ccccccceecCCCcEEEEEEcCCCcEEEE
Confidence 35677999999999999844 88999999999999999987 54 44458888888887655544444433
No 294
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=85.56 E-value=7.7 Score=34.26 Aligned_cols=92 Identities=16% Similarity=0.091 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHcCCCEEEEEcccC--hHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEe
Q 018060 32 PMILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN 109 (361)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~ 109 (361)
..|..+++.+.+. ..+|+||=+.. .+.+.+.+.+. -.+.+....+..|.+.+.-.+.+.....+.|.++++.
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~~-----~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD 81 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLRG-----QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLD 81 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhccC-----CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEEC
Confidence 4778888888776 45666665552 23444444331 2344444455568888888887765433445899999
Q ss_pred CCeeeccC-HHHHHHHHHHcC
Q 018060 110 SDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 110 ~D~~~~~~-l~~~~~~~~~~~ 129 (361)
.|.....+ ++++++...+.+
T Consensus 82 ~D~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 82 QDSRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred CCCCCCHHHHHHHHHHHHhcC
Confidence 99977655 788887766543
No 295
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=84.97 E-value=9.2 Score=36.54 Aligned_cols=101 Identities=17% Similarity=0.112 Sum_probs=63.5
Q ss_pred ccceeCCcc-hHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCCchHHHHHHhhccC
Q 018060 24 PLVEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLID 99 (361)
Q Consensus 24 ~llpl~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~~~al~~~~~~~~~ 99 (361)
-++|.-|.+ .+..+++++.+.. --+++++.+...+...+.++++..+. ++.+... ....|-+.++..+....
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~--~~n~Gka~AlN~gl~~a-- 154 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHL--AHNQGKAIALRMGAAAA-- 154 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEe--CCCCCHHHHHHHHHHhC--
Confidence 466776664 6888899887763 23677766655555555555443222 3444332 33346677777776654
Q ss_pred CCCCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 100 DTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
. .|.++++.+|.+.+.+ +.++++.+.+++
T Consensus 155 ~-~d~iv~lDAD~~~~~d~L~~lv~~~~~~~ 184 (444)
T PRK14583 155 R-SEYLVCIDGDALLDKNAVPYLVAPLIANP 184 (444)
T ss_pred C-CCEEEEECCCCCcCHHHHHHHHHHHHhCC
Confidence 2 3489999999977766 788887765544
No 296
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=84.80 E-value=10 Score=34.58 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=50.8
Q ss_pred CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc-CHHHHHHHH
Q 018060 47 TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY-PFAEMIEFH 125 (361)
Q Consensus 47 ~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~-~l~~~~~~~ 125 (361)
-+++++-+...+...+.++++....+.++.........|.+.++..+.+.. .+ |.++++.+|.-.+. .+.++++..
T Consensus 39 ~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A--~g-d~vv~~DaD~q~~p~~i~~l~~~~ 115 (325)
T PRK10714 39 YEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHV--TG-DLIITLDADLQNPPEEIPRLVAKA 115 (325)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhC--CC-CEEEEECCCCCCCHHHHHHHHHHH
Confidence 366666555545555555554333233444333344557788888888776 33 48999999996554 588888877
Q ss_pred HHcCCceE
Q 018060 126 KAHGGEAS 133 (361)
Q Consensus 126 ~~~~~~~~ 133 (361)
.+ +.+++
T Consensus 116 ~~-~~DvV 122 (325)
T PRK10714 116 DE-GYDVV 122 (325)
T ss_pred Hh-hCCEE
Confidence 53 44533
No 297
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=84.69 E-value=9 Score=35.62 Aligned_cols=99 Identities=9% Similarity=0.146 Sum_probs=56.9
Q ss_pred cceeCCc-chHHHHHHHHHHcCC--CEEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCC---chHHHHHHhhc
Q 018060 25 LVEFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGT---AGPLALARDKL 97 (361)
Q Consensus 25 llpl~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~---~~al~~~~~~~ 97 (361)
++|.-|. +.|..+|+.+.+..- -+|+++.+...+...+.++++.... +.++.++....+.|. ..++.++.+..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a 125 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA 125 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence 5666554 689999999987752 4666655544343344444432221 233443333333343 23444443333
Q ss_pred cCCCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018060 98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHK 126 (361)
Q Consensus 98 ~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~ 126 (361)
..|.++++.+|.....+ ++++++.+.
T Consensus 126 ---~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 126 ---RHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred ---cCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 33489999999977766 788887764
No 298
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=83.78 E-value=17 Score=34.74 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=64.1
Q ss_pred cceeCCc-chHHHHHHHHHHcCC--C--EEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060 25 LVEFANK-PMILHQIEALKAVGV--T--EVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLI 98 (361)
Q Consensus 25 llpl~g~-pli~~~l~~l~~~gi--~--~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~~~al~~~~~~~~ 98 (361)
++|.-|. ..+..+++++.+... + +|+|+-+...+...+.++++.... ++.+.... ...|-+.++-.+.+..
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~--~~~Gka~AlN~gl~~s- 130 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMN--SDQGKAKALNAAIYNS- 130 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeC--CCCCHHHHHHHHHHHc-
Confidence 4455454 588899999887643 2 466665555566666655443322 34444333 2357788888888765
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
.+ |.++++.+|.+.+.+ ++++++.+.+.+
T Consensus 131 -~g-~~v~~~DaD~~~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 131 -IG-KYIIHIDSDGKLHKDAIKNMVTRFENNP 160 (439)
T ss_pred -cC-CEEEEECCCCCcChHHHHHHHHHHHhCC
Confidence 33 489999999977766 788888876544
No 299
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=83.32 E-value=4 Score=29.91 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=6.8
Q ss_pred cEECCCCEEeccEEcC
Q 018060 296 VRIKKHACISSSIIGW 311 (361)
Q Consensus 296 ~~i~~~~~i~~~~i~~ 311 (361)
..|+.++.+.+.+-.+
T Consensus 37 v~i~~~~~v~G~i~~~ 52 (101)
T PF04519_consen 37 VKIGGNGEVKGDIKAD 52 (101)
T ss_pred EEEcCCCEEEEEEEEe
Confidence 4444444444433333
No 300
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=82.82 E-value=9.6 Score=30.18 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=52.5
Q ss_pred ccCCcEEecceEEcCCCEECCCcEECCCcEECCC-CEECCCcEEeceEEccCcEECCCCEEeccEEcCCCEECCCcEEcC
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPG-CVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 323 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~-~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 323 (361)
+..++.+.+.......-.|.. .+. +.+...+ +.|++..+|...+--+...| ++.+.++....+...|...+.+.+
T Consensus 26 i~~g~~f~G~l~f~~~l~IdG--~~~-G~v~s~~~iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~G 101 (146)
T COG1664 26 IGAGTTFKGELVFEGPLRIDG--TFE-GDVHSDGGIVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIG 101 (146)
T ss_pred EecCCEEEEEEEecceEEEeE--EEE-EEEEeCCCEEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEee
Confidence 344444444444444444432 332 3333333 67777777765555555555 455555555556666666666654
Q ss_pred ceEECCCeEECCceEEcCcEEcc
Q 018060 324 MTILGEDVHVCDEIYSNGGVVLP 346 (361)
Q Consensus 324 ~~~ig~~~~v~~~~~i~~~~i~~ 346 (361)
-+=+....+..|+.+.|.....
T Consensus 102 -dI~~~~i~v~~Ga~f~G~~~~~ 123 (146)
T COG1664 102 -DITTKEITVEEGAIFEGDCEML 123 (146)
T ss_pred -eecccEEEEccCCEEEeEEEec
Confidence 5556666677777776544433
No 301
>PRK10073 putative glycosyl transferase; Provisional
Probab=82.56 E-value=19 Score=32.76 Aligned_cols=104 Identities=8% Similarity=0.056 Sum_probs=63.1
Q ss_pred ceeCCc-chHHHHHHHHHHcCC--CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060 26 VEFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (361)
Q Consensus 26 lpl~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~ 102 (361)
+|.-|. ..|..+|+++.+... -+++|+-....+...+.++++..+.. .+.+..+. ..|.+.+.-.+.+.. .+
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~-~i~vi~~~-n~G~~~arN~gl~~a--~g- 86 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYP-HVRLLHQA-NAGVSVARNTGLAVA--TG- 86 (328)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEECC-CCChHHHHHHHHHhC--CC-
Confidence 444444 589999999987743 35666555444455555555433221 23333332 447777766666665 33
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHHcCCceEE
Q 018060 103 EPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI 134 (361)
Q Consensus 103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i 134 (361)
+.++++.+|-....+ ++.+++...+.+.++++
T Consensus 87 ~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 87 KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 389999999966655 78888876665555443
No 302
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=82.39 E-value=4.2 Score=29.79 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=46.2
Q ss_pred ccCCcEEecceEEcCCCEECCCcEECCCcEECCCCEECCCcEEeceEEccCcEECCCCEEeccEEc-CCCEECCCcEEcC
Q 018060 245 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG-WHSTVGQWARVEN 323 (361)
Q Consensus 245 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~-~~~~ig~~~~i~~ 323 (361)
+.+++.+.++.....+..+... +.++........|+.++.|...+-.+.+.|. +. +.+.+.. +...|...+.+.+
T Consensus 5 I~~~~~i~G~i~~~~~v~i~G~--v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G 80 (101)
T PF04519_consen 5 IGKGTKIEGDISSDGDVRIDGR--VEGNIKAEGKVKIGGNGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEG 80 (101)
T ss_pred ECCCCEEEEEEEECcEEEEEEE--EEEEEEEceEEEEcCCCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEE
Confidence 4555556665555555555333 3233333335566666666544444455552 33 4433333 4455666666664
Q ss_pred ceEECCCeEECCceEEcC
Q 018060 324 MTILGEDVHVCDEIYSNG 341 (361)
Q Consensus 324 ~~~ig~~~~v~~~~~i~~ 341 (361)
.+-.+...+.+++.+.+
T Consensus 81 -~i~~~~l~v~~ga~i~G 97 (101)
T PF04519_consen 81 -DITAGKLEVEGGASING 97 (101)
T ss_pred -EEEECEEEEeCCCEEEE
Confidence 44444456666655544
No 303
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=82.01 E-value=22 Score=29.22 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHcCCC--EEEEEcccC-hHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEE
Q 018060 32 PMILHQIEALKAVGVT--EVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL 108 (361)
Q Consensus 32 pli~~~l~~l~~~gi~--~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~ 108 (361)
..+..+|+++.+.-.. +++|+-+.. .......++.+... ...+.+.......|.+.+.-.+.... .. |.++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a--~~-d~i~~l 90 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALELA--TG-EFVALL 90 (202)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHhh--cC-CEEEEE
Confidence 6788888888776432 566654443 23344444433221 11233333344457777777777765 22 488899
Q ss_pred eCCeeeccC-HHHHHHHHHHc
Q 018060 109 NSDVISEYP-FAEMIEFHKAH 128 (361)
Q Consensus 109 ~~D~~~~~~-l~~~~~~~~~~ 128 (361)
.+|.....+ ++.+++.+.++
T Consensus 91 d~D~~~~~~~l~~~~~~~~~~ 111 (202)
T cd04184 91 DHDDELAPHALYEVVKALNEH 111 (202)
T ss_pred CCCCcCChHHHHHHHHHHHhC
Confidence 999966665 78888887443
No 304
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=81.76 E-value=28 Score=28.76 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=59.1
Q ss_pred CcchHHHHHHHHHH-cCCC-EEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEE
Q 018060 30 NKPMILHQIEALKA-VGVT-EVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (361)
Q Consensus 30 g~pli~~~l~~l~~-~gi~-~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~l 106 (361)
|.|++-|.+..... .+.+ +++++=....+...+..++..+.. +-++...+.....|.+.|...+..... ++ .++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~--g~-fiv 93 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHAT--GD-FIV 93 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhcc--CC-eEE
Confidence 56777777765544 4554 444443333333333333322211 235555666677899999999988873 32 666
Q ss_pred EEeCCeeeccC-HHHHHHHHHHcCCceEE
Q 018060 107 VLNSDVISEYP-FAEMIEFHKAHGGEASI 134 (361)
Q Consensus 107 v~~~D~~~~~~-l~~~~~~~~~~~~~~~i 134 (361)
++.+|+--+.. +.++++..++.+.+.+.
T Consensus 94 iMDaDlsHhPk~ipe~i~lq~~~~~div~ 122 (238)
T KOG2978|consen 94 IMDADLSHHPKFIPEFIRLQKEGNYDIVL 122 (238)
T ss_pred EEeCccCCCchhHHHHHHHhhccCcceee
Confidence 77777633332 68888877666555443
No 305
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=81.52 E-value=18 Score=33.83 Aligned_cols=108 Identities=12% Similarity=0.128 Sum_probs=63.4
Q ss_pred cceeCC-cchHHHHHHHHHHcCC---CEEEEEcccChHHHHHHHHHhhhccC--cEEEEecCC-CC---CCCchHHHHHH
Q 018060 25 LVEFAN-KPMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEAKLG--IKIICSQET-EP---LGTAGPLALAR 94 (361)
Q Consensus 25 llpl~g-~pli~~~l~~l~~~gi---~~i~vv~~~~~~~~~~~l~~~~~~~~--~~i~~~~~~-~~---~g~~~al~~~~ 94 (361)
.+|.-| ...|..+|+.+.+... .+|+|+-+...+...+.++++..... ..+...... .+ .|-..++.++.
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~ 124 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI 124 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence 344444 4689999999987642 36777766655555555555432211 123222221 12 24445666666
Q ss_pred hhccCCC--CCcEEEEeCCeeeccC-HHHHHHHHHHcCCce
Q 018060 95 DKLIDDT--GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEA 132 (361)
Q Consensus 95 ~~~~~~~--~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~~~ 132 (361)
+...... .|.++++.+|...+.+ +.++++...+++..+
T Consensus 125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 6553111 3489999999976665 788988877665443
No 306
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=80.10 E-value=21 Score=30.29 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCC
Q 018060 32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 111 (361)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D 111 (361)
..|..+|+++.+. ..+++|+=+...+......+. .. ..+.+...+...|-+.+.-.+.+.....+.|.++++.+|
T Consensus 11 ~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~--~~--~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D 85 (237)
T cd02526 11 SKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL--NS--EKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQD 85 (237)
T ss_pred HHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc--cC--CcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCC
Confidence 6888999998877 566666655433333333221 11 223333334445777777777776642233489999999
Q ss_pred eeeccC-HHHHH
Q 018060 112 VISEYP-FAEMI 122 (361)
Q Consensus 112 ~~~~~~-l~~~~ 122 (361)
.....+ +++++
T Consensus 86 ~~~~~~~l~~l~ 97 (237)
T cd02526 86 SVPPPDMVEKLL 97 (237)
T ss_pred CCcCHhHHHHHH
Confidence 977665 67774
No 307
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=77.19 E-value=21 Score=30.25 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=52.1
Q ss_pred eeCCc-chHHHHHHHHHHcCCC----EEEEEcccChHH----HHHHHHHhhhccCcEEEEecCCCCCC-CchHHHHHHhh
Q 018060 27 EFANK-PMILHQIEALKAVGVT----EVVLAINYQPEV----MLNFLKEFEAKLGIKIICSQETEPLG-TAGPLALARDK 96 (361)
Q Consensus 27 pl~g~-pli~~~l~~l~~~gi~----~i~vv~~~~~~~----~~~~l~~~~~~~~~~i~~~~~~~~~g-~~~al~~~~~~ 96 (361)
|.-|. ..|..+|+.+.+.... +|+|+ ....+. +++.+.++. ..+.++......+..| .+.++-.+...
T Consensus 8 p~yNe~~~l~~~L~sl~~q~~~~~~~eIiVv-D~s~D~t~~~~~~~~~~~~-~~~~~i~~~~~~~~~G~k~~a~n~g~~~ 85 (232)
T cd06437 8 PVFNEKYVVERLIEAACALDYPKDRLEIQVL-DDSTDETVRLAREIVEEYA-AQGVNIKHVRRADRTGYKAGALAEGMKV 85 (232)
T ss_pred ecCCcHHHHHHHHHHHHhcCCCccceEEEEE-ECCCCcHHHHHHHHHHHHh-hcCCceEEEECCCCCCCchHHHHHHHHh
Confidence 44343 4788999998775322 44444 333333 333333322 1234555444443345 35566666665
Q ss_pred ccCCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018060 97 LIDDTGEPFFVLNSDVISEYP-FAEMIEFH 125 (361)
Q Consensus 97 ~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~ 125 (361)
. .+ +.++++.+|.+...+ +..+...+
T Consensus 86 a--~~-~~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 86 A--KG-EYVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred C--CC-CEEEEEcCCCCCChHHHHHhhhhh
Confidence 5 23 489999999977766 67755443
No 308
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=76.79 E-value=26 Score=33.14 Aligned_cols=102 Identities=20% Similarity=0.328 Sum_probs=70.2
Q ss_pred cceeCCc-c-hHHHHHHHHHHcCCC--EEEEEcccChHHHHHHHHHhhhcc--CcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060 25 LVEFANK-P-MILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKL--GIKIICSQETEPLGTAGPLALARDKLI 98 (361)
Q Consensus 25 llpl~g~-p-li~~~l~~l~~~gi~--~i~vv~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~~~g~~~al~~~~~~~~ 98 (361)
+.|.-|. + .++.+++.+.+.... +++++.....++..+.+++...+. ...+.+. .....|.+.++..+....+
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~gK~~al~~~l~~~~ 137 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP-EKKNGGKAGALNNGLKRAK 137 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec-cccCccchHHHHHHHhhcC
Confidence 4455455 4 899999999988643 788877767777888887765443 2333211 1334466788888887763
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHHcCC
Q 018060 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG 130 (361)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~ 130 (361)
.|-++++.+|.+...+ +.+++..+...+.
T Consensus 138 ---~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 138 ---GDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred ---CCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 3489999999988777 7888888766543
No 309
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=76.68 E-value=34 Score=35.61 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=62.5
Q ss_pred cceeCCcc--hHHHHHHHHHHcCC----CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhcc
Q 018060 25 LVEFANKP--MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI 98 (361)
Q Consensus 25 llpl~g~p--li~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~ 98 (361)
++|.-|.+ ++..++..+.+..- -+|+|+-+...++.++..++. ++.+...+. ...+-++++-.+.+..
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~----~v~yI~R~~-n~~gKAGnLN~aL~~a- 338 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV----GVKYIARPT-HEHAKAGNINNALKYA- 338 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC----CcEEEEeCC-CCcchHHHHHHHHHhC-
Confidence 45666887 57788887765431 257776666667777776653 444432222 2234567777777665
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHHcCC
Q 018060 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG 130 (361)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~ 130 (361)
.+ |.++++.+|.+...+ +++++..+.+++.
T Consensus 339 -~G-EyIavlDAD~ip~pdfL~~~V~~f~~dP~ 369 (852)
T PRK11498 339 -KG-EFVAIFDCDHVPTRSFLQMTMGWFLKDKK 369 (852)
T ss_pred -CC-CEEEEECCCCCCChHHHHHHHHHHHhCCC
Confidence 33 499999999987766 6777777665543
No 310
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=76.37 E-value=46 Score=28.27 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCC
Q 018060 32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 111 (361)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D 111 (361)
..|..+|+.+... .++|+|+-+...+...+.++++ ++++... ...|.+.+.-.+.+.. .. +.++++.+|
T Consensus 13 ~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~~----~~~v~~~---~~~g~~~~~n~~~~~a--~~-d~vl~lDaD 81 (229)
T cd02511 13 RNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKEY----GAKVYQR---WWDGFGAQRNFALELA--TN-DWVLSLDAD 81 (229)
T ss_pred HHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHHc----CCEEEEC---CCCChHHHHHHHHHhC--CC-CEEEEEeCC
Confidence 4788888888654 3688887776656666666543 4555433 3346666666666665 23 389999999
Q ss_pred eeeccC-HHHHHHHHHHcC
Q 018060 112 VISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 112 ~~~~~~-l~~~~~~~~~~~ 129 (361)
.+...+ +..+.+...+.+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 82 ERLTPELADEILALLATDD 100 (229)
T ss_pred cCcCHHHHHHHHHHHhCCC
Confidence 977666 566666655443
No 311
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=74.86 E-value=33 Score=31.34 Aligned_cols=94 Identities=11% Similarity=0.116 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHc----------CCCEEEEEcccChHHHHHHHHHhhhcc---CcEEEEecCCCCCCCchHHHHHHhhc
Q 018060 31 KPMILHQIEALKAV----------GVTEVVLAINYQPEVMLNFLKEFEAKL---GIKIICSQETEPLGTAGPLALARDKL 97 (361)
Q Consensus 31 ~pli~~~l~~l~~~----------gi~~i~vv~~~~~~~~~~~l~~~~~~~---~~~i~~~~~~~~~g~~~al~~~~~~~ 97 (361)
.+-|..+++.+.+. +-.+++||-+...+...+.++++.... +..+.........|.+.++..+....
T Consensus 82 ~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~~a 161 (333)
T PTZ00260 82 EDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLAS 161 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHHHc
Confidence 45677777766542 134677766655555555555543221 22344444444568888888887765
Q ss_pred cCCCCCcEEEEeCCeeecc-CHHHHHHHHHH
Q 018060 98 IDDTGEPFFVLNSDVISEY-PFAEMIEFHKA 127 (361)
Q Consensus 98 ~~~~~~~~lv~~~D~~~~~-~l~~~~~~~~~ 127 (361)
.+ |.++++.+|..... ++..+++...+
T Consensus 162 --~g-d~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 162 --RG-KYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred --cC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 33 48999999985554 47777776543
No 312
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=73.73 E-value=61 Score=28.29 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=56.6
Q ss_pred cceeCCcc--hHHHHHHHHHH----c---CCCEEEEEcccChHHHHH--------HHHHhhhccCcEEEEecCCCCCCC-
Q 018060 25 LVEFANKP--MILHQIEALKA----V---GVTEVVLAINYQPEVMLN--------FLKEFEAKLGIKIICSQETEPLGT- 86 (361)
Q Consensus 25 llpl~g~p--li~~~l~~l~~----~---gi~~i~vv~~~~~~~~~~--------~l~~~~~~~~~~i~~~~~~~~~g~- 86 (361)
|+|+.|.+ ++...|+++.+ . +--+|+++-....+++.. ..+++.+ +..+.+.......|.
T Consensus 4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~--~~~v~~~~r~~~~g~K 81 (254)
T cd04191 4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGA--QGRIYYRRRRENTGRK 81 (254)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCC--CCcEEEEEcCCCCCcc
Confidence 57888876 46677776543 2 234665554444333221 2222322 345555554444444
Q ss_pred chHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 87 AGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 87 ~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
+..+..+..... ...|.++++-+|.....+ +.+++..+.+.+
T Consensus 82 ag~l~~~~~~~~-~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~ 124 (254)
T cd04191 82 AGNIADFCRRWG-SRYDYMVVLDADSLMSGDTIVRLVRRMEANP 124 (254)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 344444444321 223489999999977766 788888876544
No 313
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=73.65 E-value=68 Score=28.97 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=62.8
Q ss_pred CCcchHHHHHHHHHHc--CCCEEEEEcccCh---HHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCC
Q 018060 29 ANKPMILHQIEALKAV--GVTEVVLAINYQP---EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (361)
Q Consensus 29 ~g~pli~~~l~~l~~~--gi~~i~vv~~~~~---~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~ 103 (361)
.+..-++..++.+... +.++|.++.++.. ..+.+.+.+..+..|++++-..-.. ...+-++.+.+. ...
T Consensus 140 sD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~----~ndi~~a~~~l~-g~~- 213 (322)
T COG2984 140 SDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTS----VNDIPRAVQALL-GKV- 213 (322)
T ss_pred CCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCc----ccccHHHHHHhc-CCC-
Confidence 3556688888866554 6899988888754 4455555556677788886544322 233334444453 222
Q ss_pred cEEEEeCCeeeccCHHHHHHHHHHcC
Q 018060 104 PFFVLNSDVISEYPFAEMIEFHKAHG 129 (361)
Q Consensus 104 ~~lv~~~D~~~~~~l~~~~~~~~~~~ 129 (361)
+++.++.|......+..+++...+.+
T Consensus 214 d~i~~p~dn~i~s~~~~l~~~a~~~k 239 (322)
T COG2984 214 DVIYIPTDNLIVSAIESLLQVANKAK 239 (322)
T ss_pred cEEEEecchHHHHHHHHHHHHHHHhC
Confidence 89999999977778888888776654
No 314
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=73.03 E-value=31 Score=24.62 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCC-CchHHHHHH-hhccCCCCCcEEEEe
Q 018060 32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLG-TAGPLALAR-DKLIDDTGEPFFVLN 109 (361)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g-~~~al~~~~-~~~~~~~~~~~lv~~ 109 (361)
++|...|....+.|+++++|+.+...+...+.++++. ++.+.......... .....+... ... .+.+.++.+-
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~---~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~dWvl~~D 79 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALP---GVGIIRWVDPYRDERRQRAWRNALIERA--FDADWVLFLD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCC---CcEEEEeCCCccchHHHHHHHHHHHHhC--CCCCEEEEEe
Confidence 5788888888899999999998887777788887753 24444333221111 111122222 222 2445888888
Q ss_pred CCeeec
Q 018060 110 SDVISE 115 (361)
Q Consensus 110 ~D~~~~ 115 (361)
+|-+..
T Consensus 80 ~DEfl~ 85 (97)
T PF13704_consen 80 ADEFLV 85 (97)
T ss_pred eeEEEe
Confidence 888543
No 315
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=72.76 E-value=55 Score=27.35 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=55.3
Q ss_pred cchHHHHHHHHHHcCC---CEEEEEcccChHHHHHHHHHhhhc---cCcEEEEec--CCCCCCCchHHHHHHhhccCCCC
Q 018060 31 KPMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEAK---LGIKIICSQ--ETEPLGTAGPLALARDKLIDDTG 102 (361)
Q Consensus 31 ~pli~~~l~~l~~~gi---~~i~vv~~~~~~~~~~~l~~~~~~---~~~~i~~~~--~~~~~g~~~al~~~~~~~~~~~~ 102 (361)
...|..+|+.+.+... -+++|+-+...+...+.++++..+ .++.+.... .....|.+.+.-.+.+.. .+
T Consensus 9 ~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a--~g- 85 (219)
T cd06913 9 EQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQS--SG- 85 (219)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhc--CC-
Confidence 3588899999877632 266666555444444455544322 123333222 222345566665555554 33
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 103 EPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
|.++++.+|.+...+ +.+++....+.+
T Consensus 86 d~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 86 RYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred CEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 489999999866554 777777665544
No 316
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=72.19 E-value=18 Score=30.04 Aligned_cols=97 Identities=22% Similarity=0.247 Sum_probs=47.9
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCC-CEE-EEEcccChHHHHHHHHHhhhccCcEEEEe
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGV-TEV-VLAINYQPEVMLNFLKEFEAKLGIKIICS 78 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi-~~i-~vv~~~~~~~~~~~l~~~~~~~~~~i~~~ 78 (361)
|+.+||+.|.||.|.. +++.+..-.+ -+| .|+++.......+. .+..|++....
T Consensus 1 ~ki~VlaSG~GSNlqa--------------------iida~~~~~~~a~i~~Visd~~~A~~ler----A~~~gIpt~~~ 56 (200)
T COG0299 1 KKIAVLASGNGSNLQA--------------------IIDAIKGGKLDAEIVAVISDKADAYALER----AAKAGIPTVVL 56 (200)
T ss_pred CeEEEEEeCCcccHHH--------------------HHHHHhcCCCCcEEEEEEeCCCCCHHHHH----HHHcCCCEEEe
Confidence 6789999999998744 4455442222 244 44444422212222 23335555433
Q ss_pred cCCCCCCCchHHHHHH-hhccCCCCCcEEEEeCCe-eeccCHHHHHHHHH
Q 018060 79 QETEPLGTAGPLALAR-DKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHK 126 (361)
Q Consensus 79 ~~~~~~g~~~al~~~~-~~~~~~~~~~~lv~~~D~-~~~~~l~~~~~~~~ 126 (361)
...+. .+-++...+. +.+...+. +++++.|=| +.. ..+++.+.
T Consensus 57 ~~k~~-~~r~~~d~~l~~~l~~~~~-dlvvLAGyMrIL~---~~fl~~~~ 101 (200)
T COG0299 57 DRKEF-PSREAFDRALVEALDEYGP-DLVVLAGYMRILG---PEFLSRFE 101 (200)
T ss_pred ccccC-CCHHHHHHHHHHHHHhcCC-CEEEEcchHHHcC---HHHHHHhh
Confidence 32222 2333333332 33433344 788888888 444 34455443
No 317
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=70.01 E-value=7.3 Score=32.95 Aligned_cols=98 Identities=16% Similarity=0.224 Sum_probs=50.0
Q ss_pred cceeCCc-chHHHHHHHHHHc--CCCEEEEEcccChHHHHHHHHHhhhcc-CcEEEEecCCCCCC---CchHHHHHHhhc
Q 018060 25 LVEFANK-PMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLG---TAGPLALARDKL 97 (361)
Q Consensus 25 llpl~g~-pli~~~l~~l~~~--gi~~i~vv~~~~~~~~~~~l~~~~~~~-~~~i~~~~~~~~~g---~~~al~~~~~~~ 97 (361)
++|.-|. +.+..+|+.+.+. .--+++|+.+...+...+.++++.... +..+.++......| ...++..+.+..
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~ 85 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAA 85 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhc
Confidence 3455555 5888888888764 234666666554444433343322211 12233333322122 456666666665
Q ss_pred cCCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018060 98 IDDTGEPFFVLNSDVISEYP-FAEMIEFH 125 (361)
Q Consensus 98 ~~~~~~~~lv~~~D~~~~~~-l~~~~~~~ 125 (361)
+ .|.++++..|.+...+ +.++++.+
T Consensus 86 ~---~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 86 R---GDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp -----SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred C---CCEEEEECCCcEECHHHHHHHHHHH
Confidence 3 3489999999977666 78888888
No 318
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=69.17 E-value=55 Score=33.53 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=59.5
Q ss_pred cceeCCcc--hHHHHHHHHHHcCC----CEEEEEcccChHH--------------HHHHHHHhhhccCcEEEEecCCCCC
Q 018060 25 LVEFANKP--MILHQIEALKAVGV----TEVVLAINYQPEV--------------MLNFLKEFEAKLGIKIICSQETEPL 84 (361)
Q Consensus 25 llpl~g~p--li~~~l~~l~~~gi----~~i~vv~~~~~~~--------------~~~~l~~~~~~~~~~i~~~~~~~~~ 84 (361)
++|.-|.+ +++.+++.+.+..- -+|+|+-+...+. .++.++++.++.++.....+.. ..
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~n-~~ 214 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRN-VH 214 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCCC-CC
Confidence 56777886 56788988877542 2566654432110 1233333333335444322222 22
Q ss_pred CCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHHcCC
Q 018060 85 GTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG 130 (361)
Q Consensus 85 g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~~ 130 (361)
+-++++-.+.+.. ++ |.++++.+|.+...+ +++++..+.+.+.
T Consensus 215 ~KAgnLN~al~~a--~g-d~Il~lDAD~v~~pd~L~~~v~~f~~dp~ 258 (713)
T TIGR03030 215 AKAGNINNALKHT--DG-ELILIFDADHVPTRDFLQRTVGWFVEDPK 258 (713)
T ss_pred CChHHHHHHHHhc--CC-CEEEEECCCCCcChhHHHHHHHHHHhCCC
Confidence 4467777777665 33 499999999977766 7888887765443
No 319
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=69.12 E-value=44 Score=30.01 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=63.7
Q ss_pred CCcchHHHHHHHHHHcCCCE--EEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEE
Q 018060 29 ANKPMILHQIEALKAVGVTE--VVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (361)
Q Consensus 29 ~g~pli~~~l~~l~~~gi~~--i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~l 106 (361)
.....+...++.+.+..... ++++-+...+...+.+.+.. ...+.++....-.|-+++.-.+.........+.++
T Consensus 13 n~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~---~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~l 89 (305)
T COG1216 13 NRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF---FPNVRLIENGENLGFAGGFNRGIKYALAKGDDYVL 89 (305)
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc---CCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEEE
Confidence 34557788888888876333 33334445555555555411 12455555555567777776666555333232599
Q ss_pred EEeCCeeeccC-HHHHHHHHHHcCCceEE
Q 018060 107 VLNSDVISEYP-FAEMIEFHKAHGGEASI 134 (361)
Q Consensus 107 v~~~D~~~~~~-l~~~~~~~~~~~~~~~i 134 (361)
+++-|++...+ ++++++.+.+.+..+.+
T Consensus 90 ~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 90 LLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred EEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 99999877666 89999998887654433
No 320
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=68.49 E-value=56 Score=27.87 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=62.6
Q ss_pred EEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC
Q 018060 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (361)
Q Consensus 3 avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 82 (361)
.++||.|.=..|.. ..| .+.| ..+|...+..+..- .++-|++... ++.....++|... +.++.+.....
T Consensus 91 illlCTG~F~~l~~---~~~-lleP---~ril~~lV~al~~~--~~vGVivP~~-eQ~~~~~~kW~~l-~~~~~~a~asP 159 (221)
T PF07302_consen 91 ILLLCTGEFPGLTA---RNP-LLEP---DRILPPLVAALVGG--HQVGVIVPLP-EQIAQQAEKWQPL-GNPVVVAAASP 159 (221)
T ss_pred EEEeccCCCCCCCC---Ccc-eeeh---HHhHHHHHHHhcCC--CeEEEEecCH-HHHHHHHHHHHhc-CCCeEEEEeCC
Confidence 46777876444433 333 3333 45777777766543 6888877763 4555566666543 33444443333
Q ss_pred CCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHH
Q 018060 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEF 124 (361)
Q Consensus 83 ~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~ 124 (361)
..++.+.+..+...+...+. +++++.|=-+.. ..+++++.
T Consensus 160 y~~~~~~l~~Aa~~L~~~ga-dlIvLDCmGYt~-~~r~~~~~ 199 (221)
T PF07302_consen 160 YEGDEEELAAAARELAEQGA-DLIVLDCMGYTQ-EMRDIVQR 199 (221)
T ss_pred CCCCHHHHHHHHHHHHhcCC-CEEEEECCCCCH-HHHHHHHH
Confidence 33778888888888865555 777776633332 23444443
No 321
>PRK10063 putative glycosyl transferase; Provisional
Probab=67.88 E-value=81 Score=27.32 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHc----CC-CEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEE
Q 018060 32 PMILHQIEALKAV----GV-TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (361)
Q Consensus 32 pli~~~l~~l~~~----gi-~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~l 106 (361)
..|..+|+.+.+. .. -+++|+=+...+...+.++++.....+. +.... ..|.+.++-.+.... .+ |.++
T Consensus 14 ~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~--~i~~~-~~G~~~A~N~Gi~~a--~g-~~v~ 87 (248)
T PRK10063 14 EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLR--FVSEP-DNGIYDAMNKGIAMA--QG-RFAL 87 (248)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEE--EEECC-CCCHHHHHHHHHHHc--CC-CEEE
Confidence 4678888887531 22 3555554445556666676654322333 33333 348888888888776 33 3888
Q ss_pred EEeCCeeeccCHHHHHHHHHHc
Q 018060 107 VLNSDVISEYPFAEMIEFHKAH 128 (361)
Q Consensus 107 v~~~D~~~~~~l~~~~~~~~~~ 128 (361)
++.+|-+...+..+++......
T Consensus 88 ~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 88 FLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred EEeCCcccCcCHHHHHHHHHhC
Confidence 9997776665644445444433
No 322
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.75 E-value=64 Score=26.81 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=54.8
Q ss_pred ceeCCcc-hHHHHHHHHHHcC--CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCC
Q 018060 26 VEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (361)
Q Consensus 26 lpl~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~ 102 (361)
+|+-|.+ .|..+|+.+.+.- ..+++|+-+...+...+.+.+ ..+.+... ..|.+.+.-.+..... +
T Consensus 5 i~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~------~~~~~~~~--~~g~~~a~n~g~~~a~--~- 73 (221)
T cd02522 5 IPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS------AGVVVISS--PKGRARQMNAGAAAAR--G- 73 (221)
T ss_pred EEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc------CCeEEEeC--CcCHHHHHHHHHHhcc--C-
Confidence 4554443 7888888887763 346666655544555555544 12333332 2355666666666652 3
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 103 EPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 103 ~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
+.++++..|.....+ +++++......+
T Consensus 74 ~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 74 DWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred CEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 489999999966655 677655554433
No 323
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=63.35 E-value=1.2e+02 Score=27.74 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=57.7
Q ss_pred cceeCCcc-hHHHHHHHHHHcC----CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCC----CC----------C
Q 018060 25 LVEFANKP-MILHQIEALKAVG----VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE----PL----------G 85 (361)
Q Consensus 25 llpl~g~p-li~~~l~~l~~~g----i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~----~~----------g 85 (361)
++...|+| -+.++|+.|.++. -.+++|......++..+.++.+.. .+. ...+.. .. +
T Consensus 5 lv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~--~i~--~i~~~~~~~~~~~~~~~~~~y~~ 80 (334)
T cd02514 5 LVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGD--GVT--HIQHPPISIKNVNPPHKFQGYYR 80 (334)
T ss_pred EEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhcc--ccE--EEEcccccccccCcccccchhhH
Confidence 45567899 7999999998873 456777765554556666655421 122 122111 01 1
Q ss_pred CchHHHHHHhhcc-CCCCCcEEEEeCCeeeccCH----HHHHHHHHHcCCceEE
Q 018060 86 TAGPLALARDKLI-DDTGEPFFVLNSDVISEYPF----AEMIEFHKAHGGEASI 134 (361)
Q Consensus 86 ~~~al~~~~~~~~-~~~~~~~lv~~~D~~~~~~l----~~~~~~~~~~~~~~~i 134 (361)
.+.....+++.+- ....+.++++=.|++...++ +++++.++....-+.+
T Consensus 81 ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~I 134 (334)
T cd02514 81 IARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCI 134 (334)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEE
Confidence 1221112443321 11234899999999888883 4455555544433333
No 324
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=62.81 E-value=99 Score=26.78 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEec---CCCC----CCCchHHHHHHhhccCCCCCcE
Q 018060 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ---ETEP----LGTAGPLALARDKLIDDTGEPF 105 (361)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~---~~~~----~g~~~al~~~~~~~~~~~~~~~ 105 (361)
-..-.++.|.+.|+++|.+++.+.. .+.+.+.+|....|+++.-.. .... .=+.++++.+...+...+. +.
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~-~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~a-DA 184 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTP-ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDA-DA 184 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcH-HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCC-CE
Confidence 4556678889999999999999853 344444444444477765432 1100 1123555555554433334 67
Q ss_pred EEEeCCeeeccCHHHHH
Q 018060 106 FVLNSDVISEYPFAEMI 122 (361)
Q Consensus 106 lv~~~D~~~~~~l~~~~ 122 (361)
+++.|-.+-..++-+-+
T Consensus 185 ifisCTnLrt~~vi~~l 201 (239)
T TIGR02990 185 LFLSCTALRAATCAQRI 201 (239)
T ss_pred EEEeCCCchhHHHHHHH
Confidence 77778777765543333
No 325
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=62.25 E-value=72 Score=26.49 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=12.5
Q ss_pred CeEEEEecCCCcccCC
Q 018060 1 MKALILVGGFGTRLRP 16 (361)
Q Consensus 1 m~avIla~G~g~rl~~ 16 (361)
|+..|||.|.|+.+.+
T Consensus 1 ~riail~sg~gs~~~~ 16 (190)
T TIGR00639 1 KRIVVLISGNGSNLQA 16 (190)
T ss_pred CeEEEEEcCCChhHHH
Confidence 6788999998886644
No 326
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=61.86 E-value=35 Score=27.02 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=8.1
Q ss_pred cEECCCCEEeccEEc
Q 018060 296 VRIKKHACISSSIIG 310 (361)
Q Consensus 296 ~~i~~~~~i~~~~i~ 310 (361)
+.|+...+|.+.+..
T Consensus 58 iiv~~~g~V~gei~a 72 (146)
T COG1664 58 IVVGESGRVEGEIEA 72 (146)
T ss_pred EEECCccEEEEEEEe
Confidence 566666666554333
No 327
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=59.90 E-value=50 Score=27.70 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=12.3
Q ss_pred CeEEEEecCCCcccCC
Q 018060 1 MKALILVGGFGTRLRP 16 (361)
Q Consensus 1 m~avIla~G~g~rl~~ 16 (361)
|+..|+|+|.|+-+.+
T Consensus 2 ~ki~vl~sg~gs~~~~ 17 (200)
T PRK05647 2 KRIVVLASGNGSNLQA 17 (200)
T ss_pred ceEEEEEcCCChhHHH
Confidence 6889999988876544
No 328
>PRK10018 putative glycosyl transferase; Provisional
Probab=59.73 E-value=91 Score=27.66 Aligned_cols=95 Identities=9% Similarity=0.097 Sum_probs=56.7
Q ss_pred eeCCc-chHHHHHHHHHHcCCC--EEEEEcccCh--HHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCC
Q 018060 27 EFANK-PMILHQIEALKAVGVT--EVVLAINYQP--EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT 101 (361)
Q Consensus 27 pl~g~-pli~~~l~~l~~~gi~--~i~vv~~~~~--~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~ 101 (361)
|.-|. ..|..+|+.+.+.... +++|+-+... +.+.++..++. ...+.+.......|.+.+.-.+.+.. .+
T Consensus 12 p~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~---~~ri~~i~~~~n~G~~~a~N~gi~~a--~g 86 (279)
T PRK10018 12 PTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN---DPRITYIHNDINSGACAVRNQAIMLA--QG 86 (279)
T ss_pred EeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcC---CCCEEEEECCCCCCHHHHHHHHHHHc--CC
Confidence 44344 4778899988776433 5555443322 34445544321 12344445554557777766666665 33
Q ss_pred CCcEEEEeCCeeeccC-HHHHHHHHHH
Q 018060 102 GEPFFVLNSDVISEYP-FAEMIEFHKA 127 (361)
Q Consensus 102 ~~~~lv~~~D~~~~~~-l~~~~~~~~~ 127 (361)
+.++++.+|.....+ +..+++...+
T Consensus 87 -~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 87 -EYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred -CEEEEECCCCCCCccHHHHHHHHHHh
Confidence 389999999966655 7888876654
No 329
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=56.80 E-value=1.4e+02 Score=26.35 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=42.9
Q ss_pred HHHHHHc--CCC-EEEEEcccChHHHHHHHHHhhhccCcE-EEEec-CCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe
Q 018060 38 IEALKAV--GVT-EVVLAINYQPEVMLNFLKEFEAKLGIK-IICSQ-ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV 112 (361)
Q Consensus 38 l~~l~~~--gi~-~i~vv~~~~~~~~~~~l~~~~~~~~~~-i~~~~-~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~ 112 (361)
|..+... ..+ +|+|+=+...+...+.+.++....+.. ..... .....+.+.+.-.+.... . .|.++++.+|+
T Consensus 23 l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A--~-~d~l~flD~D~ 99 (281)
T PF10111_consen 23 LESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYA--R-GDYLIFLDADC 99 (281)
T ss_pred HHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHc--C-CCEEEEEcCCe
Confidence 6666652 122 444443334444434444433332333 22222 122345555555555555 2 33899999999
Q ss_pred eeccC-HHHHHH
Q 018060 113 ISEYP-FAEMIE 123 (361)
Q Consensus 113 ~~~~~-l~~~~~ 123 (361)
+...+ +..+++
T Consensus 100 i~~~~~i~~~~~ 111 (281)
T PF10111_consen 100 IPSPDFIEKLLN 111 (281)
T ss_pred eeCHHHHHHHHH
Confidence 88766 677777
No 330
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=56.09 E-value=24 Score=32.61 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=49.8
Q ss_pred cceeCCcc---hHHHHHHHHHHcC-CCEEEEEcccCh--HHHHHHHHHhhhc-cCcEEEEe--cCCCCCCCchHHHHHHh
Q 018060 25 LVEFANKP---MILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEAK-LGIKIICS--QETEPLGTAGPLALARD 95 (361)
Q Consensus 25 llpl~g~p---li~~~l~~l~~~g-i~~i~vv~~~~~--~~~~~~l~~~~~~-~~~~i~~~--~~~~~~g~~~al~~~~~ 95 (361)
+.-+|-+| -+.-++..+.+.+ ++.++++++.+. +-..++++.+.-. -...+... .+.-..-++..+....+
T Consensus 7 ~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~ 86 (383)
T COG0381 7 LTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSK 86 (383)
T ss_pred EEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHH
Confidence 33444455 2334567777776 899999999876 6666777665322 11111112 11111123334433444
Q ss_pred hccCCCCCcEEEEeCCeeec
Q 018060 96 KLIDDTGEPFFVLNSDVISE 115 (361)
Q Consensus 96 ~~~~~~~~~~lv~~~D~~~~ 115 (361)
.+....+ +++++.||.-+.
T Consensus 87 vl~~~kP-D~VlVhGDT~t~ 105 (383)
T COG0381 87 VLEEEKP-DLVLVHGDTNTT 105 (383)
T ss_pred HHHhhCC-CEEEEeCCcchH
Confidence 5544444 899999999654
No 331
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=54.60 E-value=1.6e+02 Score=26.50 Aligned_cols=94 Identities=9% Similarity=0.043 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHc----CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEec-CCCCCCCchHHHHHHhhccCCCCCcEE
Q 018060 32 PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ-ETEPLGTAGPLALARDKLIDDTGEPFF 106 (361)
Q Consensus 32 pli~~~l~~l~~~----gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~~~g~~~al~~~~~~~~~~~~~~~l 106 (361)
..|..+|+.+.+. ...+|+|+-+...+...+.++++..+.--...... .....|.+.++..+.... . .|.++
T Consensus 44 ~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a--~-gd~vv 120 (306)
T PRK13915 44 ETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAAT--T-GDIVV 120 (306)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhc--C-CCEEE
Confidence 4778888887653 24577776665556666666554211000000011 123347778887777654 2 34899
Q ss_pred EEeCCee-ecc-CHHHHHHHHHHc
Q 018060 107 VLNSDVI-SEY-PFAEMIEFHKAH 128 (361)
Q Consensus 107 v~~~D~~-~~~-~l~~~~~~~~~~ 128 (361)
++.+|.. ... .+.++++.....
T Consensus 121 ~lDaD~~~~~p~~l~~l~~~l~~~ 144 (306)
T PRK13915 121 FVDADLINFDPMFVPGLLGPLLTD 144 (306)
T ss_pred EEeCccccCCHHHHHHHHHHHHhC
Confidence 9999995 444 478888876543
No 332
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=52.52 E-value=1.3e+02 Score=24.59 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=55.0
Q ss_pred cchHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEec-CCCCCCCchHHHHHHhhccCC--------
Q 018060 31 KPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ-ETEPLGTAGPLALARDKLIDD-------- 100 (361)
Q Consensus 31 ~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~~~g~~~al~~~~~~~~~~-------- 100 (361)
...|..+|+.+.+.. ..+|+|+-+...+...+.++......++.+.... .....|-+.++..+.......
T Consensus 9 ~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~~~ 88 (191)
T cd06436 9 EAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGADP 88 (191)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccccCC
Confidence 347888899888764 2356666665555555555510111133332221 122346778887777765311
Q ss_pred CCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018060 101 TGEPFFVLNSDVISEYP-FAEMIEFHK 126 (361)
Q Consensus 101 ~~~~~lv~~~D~~~~~~-l~~~~~~~~ 126 (361)
..+.++++.+|.....+ ++.+.+...
T Consensus 89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~ 115 (191)
T cd06436 89 ERVIIAVIDADGRLDPNALEAVAPYFS 115 (191)
T ss_pred CccEEEEECCCCCcCHhHHHHHHHhhc
Confidence 12378899999977666 677555543
No 333
>PRK10481 hypothetical protein; Provisional
Probab=52.26 E-value=1.5e+02 Score=25.37 Aligned_cols=86 Identities=12% Similarity=0.146 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe
Q 018060 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV 112 (361)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~ 112 (361)
+|...+..+.. -.++-|++.+. +++.++.++|... |.++.+.......++...+..+...+...+. +++++.|=-
T Consensus 118 ~i~~lv~Al~~--g~riGVitP~~-~qi~~~~~kw~~~-G~~v~~~~aspy~~~~~~l~~aa~~L~~~ga-D~Ivl~C~G 192 (224)
T PRK10481 118 ILPPLVAAIVG--GHQVGVIVPVE-EQLAQQAQKWQVL-QKPPVFALASPYHGSEEELIDAGKELLDQGA-DVIVLDCLG 192 (224)
T ss_pred hHHHHHHHhcC--CCeEEEEEeCH-HHHHHHHHHHHhc-CCceeEeecCCCCCCHHHHHHHHHHhhcCCC-CEEEEeCCC
Confidence 44555555543 37888888774 4566666776655 6666544433223556677777777754455 889988887
Q ss_pred eeccCHHHHHHH
Q 018060 113 ISEYPFAEMIEF 124 (361)
Q Consensus 113 ~~~~~l~~~~~~ 124 (361)
+.. ...+.++.
T Consensus 193 ~~~-~~~~~le~ 203 (224)
T PRK10481 193 YHQ-RHRDLLQK 203 (224)
T ss_pred cCH-HHHHHHHH
Confidence 775 44444444
No 334
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=50.60 E-value=31 Score=23.37 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE 66 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~ 66 (361)
|+.|+++.++.+.+.++..+.+.+........+++++
T Consensus 43 g~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k 79 (83)
T PF00583_consen 43 GSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK 79 (83)
T ss_dssp HHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH
T ss_pred chhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH
Confidence 5779999999999999999999999877666666665
No 335
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=49.62 E-value=1.1e+02 Score=22.99 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHcCCCEEEEEccc--ChHHHHHHHHHhhhccCcEEEEecC
Q 018060 33 MILHQIEALKAVGVTEVVLAINY--QPEVMLNFLKEFEAKLGIKIICSQE 80 (361)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~--~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (361)
-+...++++.+.++++|++.+++ +.+....|+.+.-+..++++....+
T Consensus 44 ~i~~L~~ri~~~~i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvsRlA~ 93 (112)
T cd01025 44 NIDKLLERIAKGQVKEVILATNPTVEGEATALYIAKLLKDFGVKVTRLAQ 93 (112)
T ss_pred CHHHHHHHHhcCCCcEEEEecCCCchHHHHHHHHHHHHhHcCCCeEEEEE
Confidence 56677778877789999999998 4567777777655555566654443
No 336
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=47.59 E-value=30 Score=26.42 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCEEEEEcccC-hHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCe--e
Q 018060 37 QIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--I 113 (361)
Q Consensus 37 ~l~~l~~~gi~~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~--~ 113 (361)
+|+.+.+...-+++|..... .......+.. ...+.+..|. ..+.++.+..+..... .+.+.++++.+|. +
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Q~-g~dLG~Rm~~a~~~~~-~g~~~vvliGsD~P~l 73 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQLWL-----PSGFSFFPQQ-GGDLGERMANAFQQAA-RGYEPVVLIGSDCPDL 73 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHHHH------TTSEEEE---SSSHHHHHHHHHHHHH-TT-SEEEEE-SS-TT-
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhcccc-----CCCCEEeecC-CCCHHHHHHHHHHHHH-cCCCcEEEEcCCCCCC
Confidence 35666666666777766663 2222222111 1122334443 3367888888887763 3334899999999 6
Q ss_pred eccCHHHHHHHHHH
Q 018060 114 SEYPFAEMIEFHKA 127 (361)
Q Consensus 114 ~~~~l~~~~~~~~~ 127 (361)
....+.+..+....
T Consensus 74 ~~~~l~~A~~~L~~ 87 (122)
T PF09837_consen 74 TPDDLEQAFEALQR 87 (122)
T ss_dssp -HHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHhcc
Confidence 66667777766544
No 337
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=47.48 E-value=1.3e+02 Score=25.50 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=11.3
Q ss_pred eEEEEecCCCcccCC
Q 018060 2 KALILVGGFGTRLRP 16 (361)
Q Consensus 2 ~avIla~G~g~rl~~ 16 (361)
+.+|||.|.|+.|..
T Consensus 1 ki~vl~Sg~Gsn~~a 15 (207)
T PLN02331 1 KLAVFVSGGGSNFRA 15 (207)
T ss_pred CEEEEEeCCChhHHH
Confidence 467889999887744
No 338
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=46.77 E-value=1.6e+02 Score=26.26 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHcC-----CC-EEEEEcccChHHHHHHHHHhhhccCc-EEEEecCCCCCCCchHHHHHHhhccCCCCCcE
Q 018060 33 MILHQIEALKAVG-----VT-EVVLAINYQPEVMLNFLKEFEAKLGI-KIICSQETEPLGTAGPLALARDKLIDDTGEPF 105 (361)
Q Consensus 33 li~~~l~~l~~~g-----i~-~i~vv~~~~~~~~~~~l~~~~~~~~~-~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~ 105 (361)
|++-+++.+.+.- +. +++||-....+...+..-++..+.|. .+....+-...|-+++++.+.-.. .+. ..
T Consensus 85 mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~--rG~-~i 161 (323)
T KOG2977|consen 85 MLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSS--RGQ-KI 161 (323)
T ss_pred HHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhc--cCc-eE
Confidence 8999999886641 22 45555555666677666666645553 455555656667888888776555 333 67
Q ss_pred EEEeCCeeecc-CHHHHHHH
Q 018060 106 FVLNSDVISEY-PFAEMIEF 124 (361)
Q Consensus 106 lv~~~D~~~~~-~l~~~~~~ 124 (361)
++..+|=-+-. |++.+.+.
T Consensus 162 lfadAdGaTkf~d~ekLe~a 181 (323)
T KOG2977|consen 162 LFADADGATKFADLEKLEKA 181 (323)
T ss_pred EEEcCCCCccCCCHHHHHHH
Confidence 78877775544 45544444
No 339
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=45.36 E-value=3.1e+02 Score=28.04 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=57.7
Q ss_pred ccceeCCcch------HHHHHHHHHHcCC---CEEEEEcccChHHHHH----HHHHhhhcc--CcEEEEecCCC-CCCCc
Q 018060 24 PLVEFANKPM------ILHQIEALKAVGV---TEVVLAINYQPEVMLN----FLKEFEAKL--GIKIICSQETE-PLGTA 87 (361)
Q Consensus 24 ~llpl~g~pl------i~~~l~~l~~~gi---~~i~vv~~~~~~~~~~----~l~~~~~~~--~~~i~~~~~~~-~~g~~ 87 (361)
-++|+.|.+. ++-+++.+.+.+- -+++++.....+.+.. .+.++.++. +..+.+..... ...-+
T Consensus 128 VliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~Ka 207 (691)
T PRK05454 128 ILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKA 207 (691)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccH
Confidence 4678888873 6666776665542 3667766654444321 122222221 23344432211 11234
Q ss_pred hHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 88 GPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 88 ~al~~~~~~~~~~~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
+.+......... .-|.++++.+|.+...+ +.+++.....+.
T Consensus 208 GNl~~~~~~~~~-~~eyivvLDADs~m~~d~L~~lv~~m~~dP 249 (691)
T PRK05454 208 GNIADFCRRWGG-AYDYMVVLDADSLMSGDTLVRLVRLMEANP 249 (691)
T ss_pred HHHHHHHHhcCC-CcCEEEEEcCCCCCCHHHHHHHHHHHhhCc
Confidence 555555554422 23499999999977766 788888765543
No 340
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=44.77 E-value=47 Score=30.55 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=44.2
Q ss_pred cccCCCCCCCCCccceeCCcc-hHHHHHHHHHHc-CCCEEEEEcccC--hHHHHHHHHH
Q 018060 12 TRLRPLTLSVPKPLVEFANKP-MILHQIEALKAV-GVTEVVLAINYQ--PEVMLNFLKE 66 (361)
Q Consensus 12 ~rl~~lt~~~pK~llpl~g~p-li~~~l~~l~~~-gi~~i~vv~~~~--~~~~~~~l~~ 66 (361)
..|+|+.+..+.-++++.++| .+.+.|+.|.++ ||++..++.+.+ .+++.+.+++
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHh
Confidence 346677667777888999998 888999999887 799998888874 4778877775
No 341
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=44.54 E-value=1.3e+02 Score=23.06 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHcC-CCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCC----CCCCCchHHHH--HHhhccCCCCCc
Q 018060 32 PMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET----EPLGTAGPLAL--ARDKLIDDTGEP 104 (361)
Q Consensus 32 pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~----~~~g~~~al~~--~~~~~~~~~~~~ 104 (361)
+-....++.+.+.+ +..+.+..++..+...++... -...|+++...+.. .....++..+. +.....+...+.
T Consensus 20 ~~~~~l~~~i~~~~~~~~~~~y~~~~~~~~~~~~~~-L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ 98 (146)
T PF01936_consen 20 IDFERLLEEIRKYGPLVRIRAYGNWDDPNQKSFQEA-LQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDT 98 (146)
T ss_dssp B-HHHHHHHHTTTEEEEEEEEEE----HHHHHHHHH-HHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeeccccchhhHHHH-HHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCE
Confidence 34556666666654 445556566433333333322 23335666555431 12223332221 222232122258
Q ss_pred EEEEeCCeeeccCHHHHHHHHHHcCCceEEEE
Q 018060 105 FFVLNSDVISEYPFAEMIEFHKAHGGEASIMV 136 (361)
Q Consensus 105 ~lv~~~D~~~~~~l~~~~~~~~~~~~~~~i~~ 136 (361)
++++.|| .|+..+++..++.+....++.
T Consensus 99 ivLvSgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 99 IVLVSGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp EEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred EEEEECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 9999999 467888888887776656554
No 342
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=42.01 E-value=2.2e+02 Score=24.18 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=33.0
Q ss_pred EEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHHHHHcCCceEE
Q 018060 74 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEFHKAHGGEASI 134 (361)
Q Consensus 74 ~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~-~~~-l~~~~~~~~~~~~~~~i 134 (361)
.+.+.......+.+.+.-.+.+.- +.+.++++.-|+.. +.+ +.++++.+++.+.-+++
T Consensus 30 ~i~i~~~~~~~s~~~~yN~a~~~a---~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~i 89 (217)
T PF13712_consen 30 LIEIDNVRNAKSMAAAYNEAMEKA---KAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMI 89 (217)
T ss_dssp EEEEE-SSS-S-TTTHHHHHGGG-----SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEE
T ss_pred EEEEeccCCCcCHHHHHHHHHHhC---CCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEE
Confidence 344444444456666666666654 33489999999944 455 68888888665544333
No 343
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=40.84 E-value=47 Score=25.28 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=15.3
Q ss_pred CcchHHHHHHHHHHcCCCEEEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLA 52 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv 52 (361)
+.|-++..++.+.+.|.++++|+
T Consensus 44 ~~P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NEPTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 46777777777777776666553
No 344
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=40.52 E-value=1.6e+02 Score=26.42 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=5.5
Q ss_pred cEEEEeCCe
Q 018060 104 PFFVLNSDV 112 (361)
Q Consensus 104 ~~lv~~~D~ 112 (361)
+++++.|=+
T Consensus 171 Dlivlagym 179 (289)
T PRK13010 171 ELVVLARYM 179 (289)
T ss_pred CEEEEehhh
Confidence 566666655
No 345
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=39.20 E-value=80 Score=28.99 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHc-CCCEEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCC----CchHHHHHHhhccCCCCCcEEE
Q 018060 33 MILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLG----TAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 33 li~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g----~~~al~~~~~~~~~~~~~~~lv 107 (361)
++..++..|.+. +++..+++++.+.....+.++.+.-.. ++.......+.+ ++..+....+.+..... ++++
T Consensus 15 ~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~p-Div~ 91 (365)
T TIGR00236 15 KMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPP--DYDLNIMSPGQTLGEITSNMLEGLEELLLEEKP-DIVL 91 (365)
T ss_pred HHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCC--CeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCC-CEEE
Confidence 666677888775 588889999988765566555542111 121111111112 22333334445544444 8899
Q ss_pred EeCCe
Q 018060 108 LNSDV 112 (361)
Q Consensus 108 ~~~D~ 112 (361)
+.||.
T Consensus 92 ~~gd~ 96 (365)
T TIGR00236 92 VQGDT 96 (365)
T ss_pred EeCCc
Confidence 99986
No 346
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=38.24 E-value=2.1e+02 Score=26.66 Aligned_cols=85 Identities=9% Similarity=0.090 Sum_probs=50.4
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHH--HHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv 107 (361)
|.-.++..-+.+...|.+++.|+++....+ +.+.+.+.-+..++++......++.-+.+.+..+.+..+..+.|-++-
T Consensus 13 G~g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia 92 (379)
T TIGR02638 13 GAGAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIA 92 (379)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 566788888888888889999999874322 222222222233566655544444456777777777765555533444
Q ss_pred EeCCeee
Q 018060 108 LNSDVIS 114 (361)
Q Consensus 108 ~~~D~~~ 114 (361)
+.|-.+.
T Consensus 93 iGGGSvi 99 (379)
T TIGR02638 93 IGGGSPI 99 (379)
T ss_pred eCChHHH
Confidence 5554433
No 347
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.01 E-value=3.5e+02 Score=25.47 Aligned_cols=147 Identities=14% Similarity=0.198 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHHcC----CCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcE
Q 018060 31 KPMILHQIEALKAVG----VTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF 105 (361)
Q Consensus 31 ~pli~~~l~~l~~~g----i~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~ 105 (361)
+++|.+++.++.+.. +.+|++|=.. +..+.-..|.++. ++......+..|...+=-.+++.. ... .+
T Consensus 137 RS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped~~~L~ri~-----kvr~LRN~~ReGLirSRvrGAdvA--~a~-vl 208 (559)
T KOG3738|consen 137 RSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPEDGKLLKRIP-----KVRVLRNNEREGLIRSRVRGADVA--QAT-VL 208 (559)
T ss_pred HHHHHHHHHHHHcCChHHhhheeEEecCCCCChHHHHHHhhhh-----eeeeecccchhhhhhhhccccccc--cce-EE
Confidence 457777766554432 5677776665 3445555555542 333344444445555444444443 221 33
Q ss_pred EEEeCCeeeccC-HHHHHHHHHHcCCceEEEEEEc---cCCCCceeEEEcCCC--C--eEeeee------------ecCC
Q 018060 106 FVLNSDVISEYP-FAEMIEFHKAHGGEASIMVTKV---DEPSKYGVVVMEEST--G--KVEKFV------------EKPK 165 (361)
Q Consensus 106 lv~~~D~~~~~~-l~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~v~~~~~~--~--~v~~~~------------ek~~ 165 (361)
.++.+-.=.+.. |+.+++...+... .++.+. -+...+.++..+.+- | .-+.|. -.|.
T Consensus 209 tFLDSHcEvN~~WLePLL~Rvaed~t---rvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLhF~We~~~~eqr~sr~~Pt 285 (559)
T KOG3738|consen 209 TFLDSHCEVNEGWLEPLLERVAEDTT---RVVSPIIDVINLDNFSYVGASADLRGGFDWSLHFKWEQMQLEQRESRADPT 285 (559)
T ss_pred EEEecceeecchhhHHHHHHHhhccc---ceeecccccccccccccccchhhhcCCcceEEEEEehhcCHHHHhhccCCC
Confidence 344333344444 8889888766433 333333 233344444433220 1 111221 1122
Q ss_pred C-CCCCeEEEEEEEeCHhhHhhcc
Q 018060 166 L-FVGNKINAGIYLLNPAVLDRIE 188 (361)
Q Consensus 166 ~-~~~~~~~~Giyi~~~~~l~~l~ 188 (361)
. ..+.-.-.|++++++++|+.|.
T Consensus 286 ~PirtP~iAGGlfvidk~wF~~LG 309 (559)
T KOG3738|consen 286 APIRTPAIAGGLFVIDKEWFNELG 309 (559)
T ss_pred CcccCccccceeEEecHHHHHHhc
Confidence 2 2344566799999999999884
No 348
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=37.70 E-value=3e+02 Score=26.66 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=38.6
Q ss_pred CCCCccceeC------CcchHHHHHHHHHH---cCCCEEEEEccc-ChHHHHHHHHH----hhhccCc--EEEEecCC
Q 018060 20 SVPKPLVEFA------NKPMILHQIEALKA---VGVTEVVLAINY-QPEVMLNFLKE----FEAKLGI--KIICSQET 81 (361)
Q Consensus 20 ~~pK~llpl~------g~pli~~~l~~l~~---~gi~~i~vv~~~-~~~~~~~~l~~----~~~~~~~--~i~~~~~~ 81 (361)
..||.|+|+. -.|+=+|..|...= .|.-+++..+++ +.+.+++.+.+ +..+.++ +|.+..|.
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~f~IsfS~Qk 242 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVKFEISFSEQK 242 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCceEEEEecccC
Confidence 5899999997 25799999885432 245577666666 44555555554 3344444 34455543
No 349
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=37.33 E-value=2.3e+02 Score=24.19 Aligned_cols=29 Identities=7% Similarity=0.096 Sum_probs=22.2
Q ss_pred CCCcEEEEeCCeeeccC-HHHHHHHHHHcC
Q 018060 101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (361)
Q Consensus 101 ~~~~~lv~~~D~~~~~~-l~~~~~~~~~~~ 129 (361)
..|.++++.+|.+...+ +..+++.+.+.+
T Consensus 73 ~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p 102 (244)
T cd04190 73 DPEFILLVDADTKFDPDSIVQLYKAMDKDP 102 (244)
T ss_pred CCCEEEEECCCCcCCHhHHHHHHHHHHhCC
Confidence 34589999999988777 788887775543
No 350
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=33.83 E-value=1e+02 Score=26.53 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHcCCCEEEEEcccC--hHHHHHHHHHhhhc-cCcEEEEe
Q 018060 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEAK-LGIKIICS 78 (361)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~l~~~~~~-~~~~i~~~ 78 (361)
++..++++|.+.|+++++++.++. ...+....+++..+ .++.+...
T Consensus 87 ~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~~ 135 (237)
T PF02633_consen 87 LLRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVFVI 135 (237)
T ss_dssp HHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 677778899999999999988874 33466666665554 56665443
No 351
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.93 E-value=1.9e+02 Score=20.69 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=39.2
Q ss_pred EEEEcc--cChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018060 49 VVLAIN--YQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK 126 (361)
Q Consensus 49 i~vv~~--~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~~~l~~~~~~~~ 126 (361)
|.++-+ .....+++.++++ |.++.+. ....+.-.........+ ... +++|+.-|.+.+.....+-+..+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~----G~~~~~h--g~~~~~~~~~~~l~~~i--~~a-D~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKY----GGKLIHH--GRDGGDEKKASRLPSKI--KKA-DLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHc----CCEEEEE--ecCCCCccchhHHHHhc--CCC-CEEEEEeCCcChHHHHHHHHHHH
Confidence 455555 3445666666654 5555444 11122223322334445 333 78888888888766555555555
Q ss_pred HcCC
Q 018060 127 AHGG 130 (361)
Q Consensus 127 ~~~~ 130 (361)
+.+.
T Consensus 73 k~~i 76 (97)
T PF10087_consen 73 KYGI 76 (97)
T ss_pred HcCC
Confidence 5443
No 352
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=31.65 E-value=1.6e+02 Score=20.29 Aligned_cols=37 Identities=8% Similarity=0.164 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHcCCCEEEEEcccC----hHHHHHHHHHhh
Q 018060 32 PMILHQIEALKAVGVTEVVLAINYQ----PEVMLNFLKEFE 68 (361)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~----~~~~~~~l~~~~ 68 (361)
..++..|+.+.+.+...+.|+++.. ...+++.+.+|-
T Consensus 13 ~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L 53 (83)
T PF01713_consen 13 RALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWL 53 (83)
T ss_dssp HHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHH
Confidence 4677888888888899999999986 445666666654
No 353
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=31.58 E-value=3.4e+02 Score=25.66 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=47.6
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccCh------HHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCC
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~------~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~ 103 (361)
|.-.++..-+.+.+.|.++++|+++... +.+.+.|+ ..++++.....-.+.-+.+.+..+.+..+..+.|
T Consensus 7 G~g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~----~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D 82 (414)
T cd08190 7 GPGVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLE----AAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFD 82 (414)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHH----HcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCC
Confidence 4556777777788888899999998743 22333333 2355555443333334567777777776555554
Q ss_pred cEEEEeCCee
Q 018060 104 PFFVLNSDVI 113 (361)
Q Consensus 104 ~~lv~~~D~~ 113 (361)
-++-+.|-.+
T Consensus 83 ~IIaiGGGSv 92 (414)
T cd08190 83 AFVAVGGGSV 92 (414)
T ss_pred EEEEeCCccH
Confidence 4555555543
No 354
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.54 E-value=1.7e+02 Score=24.47 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHcCCCEEEEEccc--ChHHHHHHHHHhhhccCcEEEEec
Q 018060 33 MILHQIEALKAVGVTEVVLAINY--QPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~--~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
-|+..++++.+.++++|++.+++ +.+....|+.+.-+..++++....
T Consensus 122 ~i~~L~~Ri~~~~v~EVIlAt~~tvEGe~Ta~yi~~~lk~~~ikvtRlA 170 (195)
T TIGR00615 122 TIAALLKRLQEESVKEVILATNPTVEGEATALYIARLLQPFGVKVTRIA 170 (195)
T ss_pred CHHHHHHHHhcCCCcEEEEeCCCCchHHHHHHHHHHHhhhcCCcEEeee
Confidence 56777788877789999999998 456778888775454566665443
No 355
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=31.50 E-value=3.3e+02 Score=25.33 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=47.9
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHH--HHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv 107 (361)
|+-.++..-+.+...|.++++|+++....+ ..+.+.+.-+..++++.....-++.-+.+.+..+.+..+..+. +++|
T Consensus 12 G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~-D~II 90 (377)
T cd08176 12 GAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGC-DFII 90 (377)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCC-CEEE
Confidence 555678887888888888999998864322 2222222222335565544443333456777777776654455 4444
Q ss_pred -EeCCee
Q 018060 108 -LNSDVI 113 (361)
Q Consensus 108 -~~~D~~ 113 (361)
+.|-.+
T Consensus 91 avGGGS~ 97 (377)
T cd08176 91 SIGGGSP 97 (377)
T ss_pred EeCCcHH
Confidence 555443
No 356
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=31.40 E-value=3.5e+02 Score=25.10 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=48.8
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHH--HHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv 107 (361)
|+-.+++.-+.+.+.|.+++.|+++....+ ..+.+.+.-+..++++.....-++.-+.+.+..+.+.++..+. +++|
T Consensus 10 G~g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-d~II 88 (374)
T cd08189 10 GSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGC-DAIL 88 (374)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 555678877888888889999998874322 1122222122225555544444444567777777777655555 4444
Q ss_pred -EeCCeee
Q 018060 108 -LNSDVIS 114 (361)
Q Consensus 108 -~~~D~~~ 114 (361)
+.|-...
T Consensus 89 aiGGGS~~ 96 (374)
T cd08189 89 AVGGGSVI 96 (374)
T ss_pred EeCCccHH
Confidence 5554433
No 357
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=30.90 E-value=75 Score=29.79 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=6.3
Q ss_pred ccCcEECCCCEEec
Q 018060 293 MRGVRIKKHACISS 306 (361)
Q Consensus 293 ~~~~~i~~~~~i~~ 306 (361)
.-++.+|.|+.+.+
T Consensus 451 sGdV~FGknV~LkG 464 (498)
T KOG2638|consen 451 SGDVWFGKNVSLKG 464 (498)
T ss_pred eccEEeccceEEee
Confidence 33444444444444
No 358
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=30.89 E-value=3.5e+02 Score=25.31 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=51.5
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccC------hHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCC
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQ------PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~------~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~ 103 (361)
|.=-+++..+.....|.+++.||+.+. .+.+.+.|+. .++++.+...-.+.-+.+.+..+.+..++.+.|
T Consensus 13 G~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~----~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D 88 (377)
T COG1454 13 GRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDA----AGIEYEVFDEVEPEPTIETVEAGAEVAREFGPD 88 (377)
T ss_pred cCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHh----cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 555778888888888999999999983 2344444443 245655555554545677787777777666664
Q ss_pred cEEEEeCCe
Q 018060 104 PFFVLNSDV 112 (361)
Q Consensus 104 ~~lv~~~D~ 112 (361)
.++=+.|-.
T Consensus 89 ~iIalGGGS 97 (377)
T COG1454 89 TIIALGGGS 97 (377)
T ss_pred EEEEeCCcc
Confidence 444455544
No 359
>PLN02828 formyltetrahydrofolate deformylase
Probab=30.59 E-value=73 Score=28.14 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=4.8
Q ss_pred CCHHHHHHH
Q 018060 221 GQPRDYITG 229 (361)
Q Consensus 221 ~t~~dy~~a 229 (361)
+|++++.+.
T Consensus 228 dt~~~L~~r 236 (268)
T PLN02828 228 DNLRSFVQK 236 (268)
T ss_pred CCHHHHHHH
Confidence 456666443
No 360
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=29.07 E-value=1.5e+02 Score=26.35 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=5.3
Q ss_pred cEEEEeCCe
Q 018060 104 PFFVLNSDV 112 (361)
Q Consensus 104 ~~lv~~~D~ 112 (361)
+++++.|=+
T Consensus 162 Dlivlagym 170 (280)
T TIGR00655 162 DLVVLAKYM 170 (280)
T ss_pred CEEEEeCch
Confidence 566666555
No 361
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=28.83 E-value=4.4e+02 Score=24.31 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=45.7
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChH---HHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPE---VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~---~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~l 106 (361)
|.-.++..-+.+...|.++++|+++.... .+.+.+++ .++++.....-++.-+.+.+..+.+.++..+. +++
T Consensus 7 G~g~l~~l~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-D~I 81 (367)
T cd08182 7 GRGAIAKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILKP----LGTLVVVFDDVQPNPDLEDLAAGIRLLREFGP-DAV 81 (367)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCchHHHHHHHHHHHHH----cCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCc-CEE
Confidence 34456777777777788899999987543 34444432 24555444333333456777777777655445 444
Q ss_pred E-EeCCe
Q 018060 107 V-LNSDV 112 (361)
Q Consensus 107 v-~~~D~ 112 (361)
| +.|-.
T Consensus 82 IavGGGs 88 (367)
T cd08182 82 LAVGGGS 88 (367)
T ss_pred EEeCCcH
Confidence 4 44444
No 362
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=28.52 E-value=5.3e+02 Score=25.26 Aligned_cols=97 Identities=8% Similarity=0.067 Sum_probs=54.7
Q ss_pred cceeCCc-chHHHHHHHH-HHcC--CCEEEEEcccChHHHHHHHHHhhhc-cCcEEEEecCCCCCCCchHHHHHHhhcc-
Q 018060 25 LVEFANK-PMILHQIEAL-KAVG--VTEVVLAINYQPEVMLNFLKEFEAK-LGIKIICSQETEPLGTAGPLALARDKLI- 98 (361)
Q Consensus 25 llpl~g~-pli~~~l~~l-~~~g--i~~i~vv~~~~~~~~~~~l~~~~~~-~~~~i~~~~~~~~~g~~~al~~~~~~~~- 98 (361)
++|--|. ..|..+++++ .+.. --+|+|+...+.+...+.+++...+ .++.+.......+.+-+.++-.+.+.+.
T Consensus 71 lIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~ 150 (504)
T PRK14716 71 FVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFA 150 (504)
T ss_pred EEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 4455455 4889999875 3433 2367777655444444444443322 1344444444444556777776665441
Q ss_pred --CC---CCCcEEEEeCCeeeccC-HHHH
Q 018060 99 --DD---TGEPFFVLNSDVISEYP-FAEM 121 (361)
Q Consensus 99 --~~---~~~~~lv~~~D~~~~~~-l~~~ 121 (361)
.. .-|.++++.+|.+.+.+ ++.+
T Consensus 151 ~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~ 179 (504)
T PRK14716 151 FERERGIRFAIIVLHDAEDVIHPLELRLY 179 (504)
T ss_pred hhhhcCCCcCEEEEEcCCCCcCccHHHHH
Confidence 11 12488999999988777 4433
No 363
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=28.26 E-value=4.5e+02 Score=24.27 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=46.9
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHH--HHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv 107 (361)
|.-.++..-+.+.+.+.+++.|+++..... ..+.+.+.-+..++++.....-++.-+.+.+..+.+.++..+.|-++-
T Consensus 7 G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~Iia 86 (370)
T cd08551 7 GAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIA 86 (370)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 445677777888887889999998874322 222222211222455543333333345677777777665444433343
Q ss_pred EeCCeee
Q 018060 108 LNSDVIS 114 (361)
Q Consensus 108 ~~~D~~~ 114 (361)
+.|-.+.
T Consensus 87 iGGGs~~ 93 (370)
T cd08551 87 VGGGSVL 93 (370)
T ss_pred eCCchHH
Confidence 5554433
No 364
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=28.16 E-value=4.4e+02 Score=24.39 Aligned_cols=84 Identities=7% Similarity=0.025 Sum_probs=46.4
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHH--HHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv 107 (361)
|.-.+...-+.+.+.|.++++|+++....+ ..+.+.+.-+..++++.....-.+.-+.+.+..+.+..+..+. +++|
T Consensus 8 G~g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-d~II 86 (370)
T cd08192 8 GAGAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGC-DGVI 86 (370)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCC-CEEE
Confidence 455677777777888888999998864222 1222222122234555433333333456677777766654445 4444
Q ss_pred -EeCCeee
Q 018060 108 -LNSDVIS 114 (361)
Q Consensus 108 -~~~D~~~ 114 (361)
+.|-.+.
T Consensus 87 aiGGGSvi 94 (370)
T cd08192 87 AFGGGSAL 94 (370)
T ss_pred EeCCchHH
Confidence 5554433
No 365
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=27.32 E-value=2.4e+02 Score=22.99 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=24.7
Q ss_pred CeEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCC--EEEEEcccChHH
Q 018060 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVT--EVVLAINYQPEV 59 (361)
Q Consensus 1 m~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~--~i~vv~~~~~~~ 59 (361)
|+.++++.|.++ .+..+++.+.+.+.. -+.|+++.+...
T Consensus 1 mrI~~~~Sg~~~--------------------~~~~~l~~l~~~~~~~~iv~Vit~~~~~~ 41 (181)
T PF00551_consen 1 MRIVFFGSGSGS--------------------FLKALLEALKARGHNVEIVLVITNPDKPR 41 (181)
T ss_dssp EEEEEEESSSSH--------------------HHHHHHHHHHTTSSEEEEEEEEESSTTTH
T ss_pred CEEEEEEcCCCH--------------------HHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 677777777654 455567777777654 455555654443
No 366
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=27.24 E-value=5e+02 Score=24.10 Aligned_cols=83 Identities=10% Similarity=0.030 Sum_probs=45.6
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHH--HHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv 107 (361)
|.--++..-+.+...+.++++|+++....+ ..+.+.+.-+..++++.....-.+.-+.+.+..+.+.++..+.|-++=
T Consensus 7 G~g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (375)
T cd08194 7 GEGAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIA 86 (375)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 455677777777767778999999864322 222232222233555544433333345677777777665444533333
Q ss_pred EeCCe
Q 018060 108 LNSDV 112 (361)
Q Consensus 108 ~~~D~ 112 (361)
+.|-.
T Consensus 87 iGGGS 91 (375)
T cd08194 87 LGGGS 91 (375)
T ss_pred eCCch
Confidence 55544
No 367
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=26.73 E-value=3.3e+02 Score=21.76 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCcEEEEec
Q 018060 34 ILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 34 i~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
-+++++.|.+.|++.++-+.+...-.+.+.+.+ ..++++....
T Consensus 3 ~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~---~~~i~~v~~r 45 (164)
T cd07039 3 ADVIVETLENWGVKRVYGIPGDSINGLMDALRR---EGKIEFIQVR 45 (164)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhh---cCCCeEEEeC
Confidence 367889999999999999999865555555432 1245554443
No 368
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=25.97 E-value=1.1e+02 Score=21.74 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=24.2
Q ss_pred ceeCCcchHHHHHHHHHH--cCCCEEEEEccc
Q 018060 26 VEFANKPMILHQIEALKA--VGVTEVVLAINY 55 (361)
Q Consensus 26 lpl~g~pli~~~l~~l~~--~gi~~i~vv~~~ 55 (361)
.-+++||+..|++.-+.+ .|.+++.+-...
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKarG 35 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKARG 35 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 457899999999998765 468899887765
No 369
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.89 E-value=4.5e+02 Score=24.10 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=50.9
Q ss_pred CCccceeC----Cc-chHHHHHHHHHHcCCCEEEEEccc-ChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHh
Q 018060 22 PKPLVEFA----NK-PMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARD 95 (361)
Q Consensus 22 pK~llpl~----g~-pli~~~l~~l~~~gi~~i~vv~~~-~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~ 95 (361)
|-..+-+| || +=|...-.++.+.| .++++..+. -.+.-.+.|+.|.++.|++++-. .....++.-++.+.+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g-~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~--~~G~DpAaVafDAi~ 215 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQG-KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG--KEGADPAAVAFDAIQ 215 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCC-CeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc--CCCCCcHHHHHHHHH
Confidence 44444444 55 47888888899887 466666665 45566778888998888887543 234455666677766
Q ss_pred hccCCCC
Q 018060 96 KLIDDTG 102 (361)
Q Consensus 96 ~~~~~~~ 102 (361)
.....+-
T Consensus 216 ~Akar~~ 222 (340)
T COG0552 216 AAKARGI 222 (340)
T ss_pred HHHHcCC
Confidence 6544443
No 370
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=25.82 E-value=1.2e+02 Score=27.50 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=33.4
Q ss_pred CccceeCCcc-hHHHHHHHHHHc-CCCEEEEEcccC--hHHHHHHHHH
Q 018060 23 KPLVEFANKP-MILHQIEALKAV-GVTEVVLAINYQ--PEVMLNFLKE 66 (361)
Q Consensus 23 K~llpl~g~p-li~~~l~~l~~~-gi~~i~vv~~~~--~~~~~~~l~~ 66 (361)
-..+.+.|+| .+++.+|.+.+. ||+++.++.+.+ .+++-+.++.
T Consensus 120 vlV~qVHnRp~Ylr~lveSlrk~kGI~~tLlifSHD~~~~eiN~~I~~ 167 (455)
T KOG2791|consen 120 VLVLQVHNRPQYLRVLVESLRKVKGISETLLIFSHDGYFEEINRIIES 167 (455)
T ss_pred EEEEEEcCcHHHHHHHHHHHHhccCccceEEEEeccchHHHHHHHHhh
Confidence 3456778999 788889999887 799998888874 3556666654
No 371
>PRK13844 recombination protein RecR; Provisional
Probab=25.81 E-value=2.5e+02 Score=23.60 Aligned_cols=46 Identities=26% Similarity=0.268 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHcCCCEEEEEccc--ChHHHHHHHHHhhhccCcEEEEec
Q 018060 33 MILHQIEALKAVGVTEVVLAINY--QPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~--~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
-|+..++++.+.++++|++.+++ +.+....|+.+.-+. ++++....
T Consensus 126 ~i~~L~~Ri~~~~v~EVIlAt~~t~EGe~Ta~yi~~~lk~-~vkvtRlA 173 (200)
T PRK13844 126 KLDILQQIIADRKIDEVILAISPTVEGETTAHFISQMIAK-DIKISRIG 173 (200)
T ss_pred CHHHHHHHHhcCCCcEEEEeCCCCccHHHHHHHHHHHhcC-CCcEEeee
Confidence 56777777777779999999998 457778888775444 66665443
No 372
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=25.56 E-value=3.7e+02 Score=23.87 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=40.5
Q ss_pred CcchH-HHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCc--EEEEecC-CCCCCC----chHHHHHHhhccCCC
Q 018060 30 NKPMI-LHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGI--KIICSQE-TEPLGT----AGPLALARDKLIDDT 101 (361)
Q Consensus 30 g~pli-~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~--~i~~~~~-~~~~g~----~~al~~~~~~~~~~~ 101 (361)
||+-| ...+-+-...++.-|++.+++..+++.++++++...... .+.+... .++.+. +.......+++...+
T Consensus 81 GKt~L~l~~i~~~~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G 160 (274)
T cd01132 81 GKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNG 160 (274)
T ss_pred CccHHHHHHHHHhcCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCC
Confidence 56644 223322233445457777888888888888875433221 2333322 222221 111222234444333
Q ss_pred CCcEEEEeCCe
Q 018060 102 GEPFFVLNSDV 112 (361)
Q Consensus 102 ~~~~lv~~~D~ 112 (361)
. ++|++.-|+
T Consensus 161 ~-~Vlvl~Dsl 170 (274)
T cd01132 161 K-HALIIYDDL 170 (274)
T ss_pred C-CEEEEEcCh
Confidence 3 788888766
No 373
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=25.24 E-value=5.2e+02 Score=23.98 Aligned_cols=84 Identities=7% Similarity=0.091 Sum_probs=45.3
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHH--HHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv 107 (361)
|.-.++..-+.+.+.|.+++.|+++..... ..+.+.+.-+..++++.......+.-+.+.+..+.+..+..+.|-++-
T Consensus 12 G~g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIa 91 (377)
T cd08188 12 GRGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIA 91 (377)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 555777777777877889999998864322 222232222222455544433333335566666666665444433444
Q ss_pred EeCCee
Q 018060 108 LNSDVI 113 (361)
Q Consensus 108 ~~~D~~ 113 (361)
+.|-.+
T Consensus 92 iGGGsv 97 (377)
T cd08188 92 VGGGSP 97 (377)
T ss_pred eCCchH
Confidence 555443
No 374
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=24.36 E-value=1e+02 Score=26.94 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=26.2
Q ss_pred EEEEecCCCcccCCCCC-------------------------CCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccCh
Q 018060 3 ALILVGGFGTRLRPLTL-------------------------SVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP 57 (361)
Q Consensus 3 avIla~G~g~rl~~lt~-------------------------~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~ 57 (361)
-|++|.|+++||.-+.. .....+-+-.|+.=|+-+++|+...|+.++-++...-.
T Consensus 32 tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftms~g~~sL~~V~dwl~~~g~~~~GLIAaSLS 111 (294)
T PF02273_consen 32 TILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTMSIGKASLLTVIDWLATRGIRRIGLIAASLS 111 (294)
T ss_dssp EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B-------------HHHHHHHHHHHHHHHHHTT---EEEEEETTH
T ss_pred eEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChhhcchHHhHHHHHHHHHHHHhcCCCcchhhhhhhh
Confidence 58999999999965210 11111111123444566667777667766666666543
No 375
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=24.19 E-value=5.5e+02 Score=23.42 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=57.6
Q ss_pred hccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--cCHHHHHHHHHHcCCceEEEEEEccCCCCce
Q 018060 69 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YPFAEMIEFHKAHGGEASIMVTKVDEPSKYG 146 (361)
Q Consensus 69 ~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~~D~~~~--~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 146 (361)
+++|.++..+. .+.|.+-.+....+.+.+....-+++..+|.-+. .|+.+.....-. +.++.+++-.+.. -...
T Consensus 112 ~r~ga~V~~v~--~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~-k~~~lllVD~VaS-lggt 187 (385)
T KOG2862|consen 112 RRYGAEVDVVE--ADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCH-KHEALLLVDTVAS-LGGT 187 (385)
T ss_pred HhhCceeeEEe--cCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhh-cCCeEEEEechhh-cCCc
Confidence 55688887773 3457777777777777655554789999999443 233333333222 2233333322210 0011
Q ss_pred eEEEcCCCCeEeeeeecCCCCCCCeEEEEEEEeCHhhHhhccC
Q 018060 147 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL 189 (361)
Q Consensus 147 ~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giyi~~~~~l~~l~~ 189 (361)
-+..|+. + |.-.....+...+-..-.++-+||+..++.+..
T Consensus 188 ~F~mDew-g-VDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~ 228 (385)
T KOG2862|consen 188 EFEMDEW-G-VDVAYTGSQKALGAPAGLSIISFSDKALEAIRD 228 (385)
T ss_pred cceehhh-c-ccEEEecchhhcCCCCCcceeecCHHHHHHHhh
Confidence 1222332 1 110000011112222345678899999988753
No 376
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=24.00 E-value=1.1e+02 Score=22.52 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred CcchHHHHHHHHHHcCCCEEEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLA 52 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv 52 (361)
+.|-++..++.+.+.|.++|+++
T Consensus 40 ~~P~i~~~l~~l~~~G~~~i~lv 62 (103)
T cd03413 40 GYPGLDDVLAKLKKAGIKKVTLM 62 (103)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 89999999999999999998764
No 377
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=23.64 E-value=5.9e+02 Score=23.64 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=45.6
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccCh---HHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQP---EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~---~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~l 106 (361)
|+-.++..-+.+.+.| ++++|+++... ..+.+.+.+.-+..++++.....-++.-+.+.+..+.+..+..+. +++
T Consensus 10 G~g~l~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~I 87 (380)
T cd08185 10 GAGKLNELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGC-DFV 87 (380)
T ss_pred CcCHHHHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCC-CEE
Confidence 5556777777777767 89999998643 112222222222235555444333333456777777666654455 444
Q ss_pred E-EeCCee
Q 018060 107 V-LNSDVI 113 (361)
Q Consensus 107 v-~~~D~~ 113 (361)
| +.|-..
T Consensus 88 iavGGGS~ 95 (380)
T cd08185 88 VGLGGGSS 95 (380)
T ss_pred EEeCCccH
Confidence 4 555443
No 378
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=23.58 E-value=3.7e+02 Score=21.17 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHcCCC--EEEEEcccChHHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEEEe
Q 018060 32 PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN 109 (361)
Q Consensus 32 pli~~~l~~l~~~gi~--~i~vv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv~~ 109 (361)
..|..+|+.+.+.... +++|+-+...+...+.+.++.... ..+.........|...+...+..... + +.++++.
T Consensus 16 ~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~--~-~~~~~~d 91 (291)
T COG0463 16 EYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKD-VRVIRLINERNGGLGAARNAGLEYAR--G-DYIVFLD 91 (291)
T ss_pred hhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhc-ceEEEeecccCCChHHHHHhhHHhcc--C-CEEEEEc
Confidence 4788888888776432 566655555555555555543221 12333333444577777777777763 3 4899999
Q ss_pred CCeeeccC-HHHHHH
Q 018060 110 SDVISEYP-FAEMIE 123 (361)
Q Consensus 110 ~D~~~~~~-l~~~~~ 123 (361)
+|.+ ..+ +..+.+
T Consensus 92 ~d~~-~~~~~~~~~~ 105 (291)
T COG0463 92 ADDQ-HPPELIPLVA 105 (291)
T ss_pred cCCC-CCHHHHHHHH
Confidence 9999 655 444333
No 379
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=23.42 E-value=6e+02 Score=23.55 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=46.8
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHH--HHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv 107 (361)
|+-.++..-+.+.+.+.++++|+++....+ ..+.+.+.-+..++++......++.-+.+.+..+.+.++..+.|-++=
T Consensus 10 G~g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 89 (376)
T cd08193 10 GAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIG 89 (376)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 455677777777777889999998874221 122222222223455544444444456677777777765445534444
Q ss_pred EeCCee
Q 018060 108 LNSDVI 113 (361)
Q Consensus 108 ~~~D~~ 113 (361)
+.|-.+
T Consensus 90 iGGGs~ 95 (376)
T cd08193 90 FGGGSS 95 (376)
T ss_pred eCCchH
Confidence 444443
No 380
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=23.38 E-value=5.6e+02 Score=23.86 Aligned_cols=82 Identities=7% Similarity=0.102 Sum_probs=46.9
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccChHH--HHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCCcEEE
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~~~lv 107 (361)
|.-.++..-+.+.+.|.+++.|+++....+ +.+.+.+.-++.++++.....-++.-+.+.+..+.+.++..+. +++|
T Consensus 14 G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~II 92 (382)
T PRK10624 14 GRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGA-DYLI 92 (382)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 566778887888888889999998864221 2222222222235555544433333456777777766654455 4444
Q ss_pred -EeCCe
Q 018060 108 -LNSDV 112 (361)
Q Consensus 108 -~~~D~ 112 (361)
+.|-.
T Consensus 93 aiGGGS 98 (382)
T PRK10624 93 AIGGGS 98 (382)
T ss_pred EeCChH
Confidence 55544
No 381
>PRK04946 hypothetical protein; Provisional
Probab=23.12 E-value=1.6e+02 Score=24.26 Aligned_cols=39 Identities=10% Similarity=-0.050 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhc
Q 018060 32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK 70 (361)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~ 70 (361)
..|...|+.+...|+..+.|+-+.....+++++..|-..
T Consensus 110 ~~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~V~~wL~q 148 (181)
T PRK04946 110 QELGALIAACRKEHVFCACVMHGHGKHILKQQTPLWLAQ 148 (181)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCHhHHHHHHHHHHcC
Confidence 356666777777788899998888777888888887543
No 382
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=22.86 E-value=93 Score=24.31 Aligned_cols=60 Identities=12% Similarity=0.239 Sum_probs=38.8
Q ss_pred eEEEEecCCCcccCCCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcccChHHHHHHHHH
Q 018060 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE 66 (361)
Q Consensus 2 ~avIla~G~g~rl~~lt~~~pK~llpl~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~ 66 (361)
..||+++|...+ | ..+..-+--.|.+++....+.+.+.+.+-+++++....+-+...+.+
T Consensus 71 Divvitag~~~~--~---g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~~~ 130 (141)
T PF00056_consen 71 DIVVITAGVPRK--P---GMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVAQK 130 (141)
T ss_dssp SEEEETTSTSSS--T---TSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHHHH
T ss_pred cEEEEecccccc--c---cccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHHHH
Confidence 368888886432 2 12222222358889999999999998877777777666655555554
No 383
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=22.06 E-value=7.5e+02 Score=24.15 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=48.6
Q ss_pred cceeCCc--chHHHHHHHHHHcC------CCEEEEEccc--Ch---HHHHHHHHHhhhcc-CcEEEEecCC-CCCCCchH
Q 018060 25 LVEFANK--PMILHQIEALKAVG------VTEVVLAINY--QP---EVMLNFLKEFEAKL-GIKIICSQET-EPLGTAGP 89 (361)
Q Consensus 25 llpl~g~--pli~~~l~~l~~~g------i~~i~vv~~~--~~---~~~~~~l~~~~~~~-~~~i~~~~~~-~~~g~~~a 89 (361)
.+|+.|+ ..+.+.++.+.+.- ..-++|+... +. .++++.+.++..+. ..++.++... ....-+.+
T Consensus 252 IvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~ 331 (499)
T PF05679_consen 252 IVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAA 331 (499)
T ss_pred EEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHH
Confidence 5788777 58888888777652 1223333332 12 23445666554433 3455555544 44556677
Q ss_pred HHHHHhhccCCCCCcEEEEeCCeeeccC
Q 018060 90 LALARDKLIDDTGEPFFVLNSDVISEYP 117 (361)
Q Consensus 90 l~~~~~~~~~~~~~~~lv~~~D~~~~~~ 117 (361)
+..+.+.+. .++-++++.-|+.+..+
T Consensus 332 Ld~g~~~~~--~d~L~f~~Dvd~~f~~~ 357 (499)
T PF05679_consen 332 LDVGAKKFP--PDSLLFFCDVDMVFTSD 357 (499)
T ss_pred HHhhcccCC--CCcEEEEEeCCcccCHH
Confidence 777766553 22244455555555544
No 384
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=21.76 E-value=1.8e+02 Score=23.03 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=26.6
Q ss_pred eCCcchH---HHHHHHHHHcCCCEEEEEcccC-hHHHHHHHHHhhhccCcEEEEe
Q 018060 28 FANKPMI---LHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICS 78 (361)
Q Consensus 28 l~g~pli---~~~l~~l~~~gi~~i~vv~~~~-~~~~~~~l~~~~~~~~~~i~~~ 78 (361)
+.+.|.+ +...+.+.+.++++|++..+.. .+.+.+.++. .++.++++..+
T Consensus 121 ~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~-~~~~~v~v~~v 174 (175)
T PF13727_consen 121 IDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEE-LENHGVRVRVV 174 (175)
T ss_dssp ETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHH-HHTTT-EEEE-
T ss_pred ccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHH-HHhCCCEEEEe
Confidence 3455544 4556677777899999988874 4555555554 34446666543
No 385
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=21.57 E-value=1.5e+02 Score=21.57 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=23.0
Q ss_pred eCCcchHHHHHHHHHHcCCCEEEEEccc
Q 018060 28 FANKPMILHQIEALKAVGVTEVVLAINY 55 (361)
Q Consensus 28 l~g~pli~~~l~~l~~~gi~~i~vv~~~ 55 (361)
.+|+|+.+++++.+.+.|+.-.++.-+-
T Consensus 16 ~~g~~l~~~ll~~~~~~gi~GaTV~rgi 43 (101)
T PF02641_consen 16 WGGKPLYEWLLERAREAGIAGATVFRGI 43 (101)
T ss_dssp ETTEEHHHHHHHHHHHTT-SEEEEEE-S
T ss_pred cCceEHHHHHHHHHHHCCCCeEEEEcce
Confidence 5799999999999999999988886664
No 386
>PRK00076 recR recombination protein RecR; Reviewed
Probab=21.16 E-value=3.4e+02 Score=22.75 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCEEEEEccc--ChHHHHHHHHHhhhccCcEEEEec
Q 018060 34 ILHQIEALKAVGVTEVVLAINY--QPEVMLNFLKEFEAKLGIKIICSQ 79 (361)
Q Consensus 34 i~~~l~~l~~~gi~~i~vv~~~--~~~~~~~~l~~~~~~~~~~i~~~~ 79 (361)
|+..++++ +.++++|++.+++ +.+....|+.+.-+..++++....
T Consensus 123 i~~L~~ri-~~~v~EVIlA~~pt~EGe~Ta~yi~~~lk~~~ikvtRiA 169 (196)
T PRK00076 123 IDELLERL-DGEVKEVILATNPTVEGEATAHYIARLLKPLGVKVTRLA 169 (196)
T ss_pred HHHHHHHH-hCCCCEEEEeCCCCchHHHHHHHHHHHHHHcCCCeeeee
Confidence 45555666 5569999999998 456777788765444456655443
No 387
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=21.01 E-value=5.2e+02 Score=24.09 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=48.6
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcccCh------HHHHHHHHHhhhccCcEEEEecCCCCCCCchHHHHHHhhccCCCCC
Q 018060 30 NKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (361)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~------~~~~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~~ 103 (361)
|.--+.+.-+.+.+.|.++++|+++... +.+.+.|++ .++.+.......+.-+.+.+..+.+..+..+.
T Consensus 15 G~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~----~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~- 89 (383)
T PRK09860 15 GADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEE----RNIFSVIYDGTQPNPTTENVAAGLKLLKENNC- 89 (383)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHH----cCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCC-
Confidence 5567778778888889899999987632 233444432 35555444444444467777778777765555
Q ss_pred cEEE-EeCCe
Q 018060 104 PFFV-LNSDV 112 (361)
Q Consensus 104 ~~lv-~~~D~ 112 (361)
+++| +.|-.
T Consensus 90 D~IiaiGGGS 99 (383)
T PRK09860 90 DSVISLGGGS 99 (383)
T ss_pred CEEEEeCCch
Confidence 4555 55544
No 388
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=20.81 E-value=1.7e+02 Score=23.04 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHcCCCEEEEEcccC---hHHHHHHHH
Q 018060 33 MILHQIEALKAVGVTEVVLAINYQ---PEVMLNFLK 65 (361)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~---~~~~~~~l~ 65 (361)
-+++.-++|..+|+++++.+.... -+++++|++
T Consensus 107 ~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 107 NIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred hHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 567777889999999987777664 355666554
No 389
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=20.17 E-value=3.7e+02 Score=26.29 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=43.6
Q ss_pred CcchH-HHHHHHHHHcCCCEEEEEcccChHHHHHHHHHhhhccCc--EEEEecC-CCCCCC----chHHHHHHhhccCCC
Q 018060 30 NKPMI-LHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGI--KIICSQE-TEPLGT----AGPLALARDKLIDDT 101 (361)
Q Consensus 30 g~pli-~~~l~~l~~~gi~~i~vv~~~~~~~~~~~l~~~~~~~~~--~i~~~~~-~~~~g~----~~al~~~~~~~~~~~ 101 (361)
||+.| ...+-+-..+++.-|++.+++..+++.++++++.....+ .+.+... .++.+. ..+.....+++.+.+
T Consensus 173 GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G 252 (501)
T TIGR00962 173 GKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNG 252 (501)
T ss_pred CccHHHHHHHHhhcCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 56654 334433344455557888889889999998876543322 2333322 222111 111112234554444
Q ss_pred CCcEEEEeCCe
Q 018060 102 GEPFFVLNSDV 112 (361)
Q Consensus 102 ~~~~lv~~~D~ 112 (361)
. ++|++.-|+
T Consensus 253 ~-~VLlv~Ddl 262 (501)
T TIGR00962 253 K-HALIIYDDL 262 (501)
T ss_pred C-CEEEEecch
Confidence 3 888888776
Done!