Query 018062
Match_columns 361
No_of_seqs 111 out of 1050
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02821 1-hydroxy-2-methyl-2- 100.0 2E-104 4E-109 797.7 35.7 340 1-340 81-433 (460)
2 PRK13371 4-hydroxy-3-methylbut 100.0 6E-101 1E-105 763.0 35.0 334 1-340 14-359 (387)
3 PRK12360 4-hydroxy-3-methylbut 100.0 3.8E-90 8.2E-95 664.2 29.5 261 25-340 1-262 (281)
4 TIGR00216 ispH_lytB (E)-4-hydr 100.0 1.8E-89 3.9E-94 659.3 28.9 259 26-340 1-261 (280)
5 PRK01045 ispH 4-hydroxy-3-meth 100.0 3.7E-89 8E-94 662.0 30.2 260 25-340 1-263 (298)
6 COG0761 lytB 4-Hydroxy-3-methy 100.0 1.3E-88 2.8E-93 648.9 28.7 263 24-340 1-265 (294)
7 PF02401 LYTB: LytB protein; 100.0 3.9E-89 8.6E-94 657.5 20.7 260 27-340 1-262 (281)
8 PRK00087 4-hydroxy-3-methylbut 100.0 4.3E-82 9.3E-87 666.5 29.7 258 25-340 1-259 (647)
9 PF02401 LYTB: LytB protein; 96.8 0.014 3.1E-07 57.2 11.7 173 35-242 93-280 (281)
10 PRK01045 ispH 4-hydroxy-3-meth 95.3 0.18 3.9E-06 50.1 11.2 170 35-242 95-281 (298)
11 TIGR00216 ispH_lytB (E)-4-hydr 94.0 0.48 1E-05 46.7 10.3 169 36-242 96-279 (280)
12 PRK12360 4-hydroxy-3-methylbut 93.1 0.82 1.8E-05 45.1 10.3 170 35-242 98-280 (281)
13 PRK13371 4-hydroxy-3-methylbut 90.8 2.5 5.3E-05 43.6 11.0 111 119-243 263-378 (387)
14 cd01537 PBP1_Repressors_Sugar_ 89.2 3.9 8.4E-05 36.4 9.9 90 219-318 1-90 (264)
15 COG1587 HemD Uroporphyrinogen- 88.4 5.4 0.00012 37.7 10.8 150 5-181 12-191 (248)
16 PRK00087 4-hydroxy-3-methylbut 87.5 4.3 9.3E-05 44.1 10.6 170 35-242 95-277 (647)
17 PLN02821 1-hydroxy-2-methyl-2- 85.7 16 0.00035 38.5 13.2 111 118-242 336-451 (460)
18 PF02602 HEM4: Uroporphyrinoge 83.8 17 0.00037 33.1 11.3 148 7-180 1-183 (231)
19 PF13407 Peripla_BP_4: Peripla 81.2 12 0.00026 34.1 9.2 88 220-316 1-89 (257)
20 COG1023 Gnd Predicted 6-phosph 80.7 18 0.00039 35.7 10.5 108 40-154 10-122 (300)
21 PF02571 CbiJ: Precorrin-6x re 79.5 8.7 0.00019 37.1 8.0 78 98-180 45-124 (249)
22 PF03446 NAD_binding_2: NAD bi 78.1 13 0.00027 32.9 8.0 97 41-148 12-116 (163)
23 PRK08057 cobalt-precorrin-6x r 78.1 11 0.00023 36.5 8.1 106 68-180 15-123 (248)
24 cd01391 Periplasmic_Binding_Pr 76.9 22 0.00047 31.0 9.2 92 220-318 2-93 (269)
25 TIGR00109 hemH ferrochelatase. 76.9 25 0.00054 35.0 10.6 88 36-143 132-223 (322)
26 PF14542 Acetyltransf_CG: GCN5 75.9 3.1 6.7E-05 33.0 3.2 33 102-135 34-70 (78)
27 PRK13600 putative ribosomal pr 75.4 3.8 8.2E-05 33.6 3.6 46 275-320 23-68 (84)
28 cd06320 PBP1_allose_binding Pe 74.5 26 0.00056 32.2 9.4 89 220-316 2-91 (275)
29 PRK11070 ssDNA exonuclease Rec 73.7 18 0.00039 39.1 9.2 107 37-157 53-164 (575)
30 PRK05752 uroporphyrinogen-III 73.2 37 0.00079 32.1 10.3 122 3-129 12-168 (255)
31 PRK05928 hemD uroporphyrinogen 72.5 31 0.00067 31.4 9.4 116 3-123 10-152 (249)
32 cd06310 PBP1_ABC_sugar_binding 71.9 33 0.00072 31.3 9.5 90 219-316 1-91 (273)
33 KOG0238 3-Methylcrotonyl-CoA c 70.9 26 0.00057 37.8 9.3 156 4-182 8-178 (670)
34 PRK09453 phosphodiesterase; Pr 70.7 38 0.00083 30.2 9.4 45 41-85 14-72 (182)
35 cd04509 PBP1_ABC_transporter_G 70.7 40 0.00088 30.4 9.6 59 256-317 42-101 (299)
36 cd06362 PBP1_mGluR Ligand bind 70.4 94 0.002 31.4 13.1 81 272-354 220-303 (452)
37 PF10087 DUF2325: Uncharacteri 69.9 13 0.00029 30.1 5.7 51 264-315 30-83 (97)
38 cd01536 PBP1_ABC_sugar_binding 69.7 56 0.0012 29.2 10.3 89 220-317 2-90 (267)
39 cd06342 PBP1_ABC_LIVBP_like Ty 69.5 9.8 0.00021 36.0 5.5 58 256-316 42-99 (334)
40 cd06319 PBP1_ABC_sugar_binding 69.3 51 0.0011 30.1 10.1 88 220-316 2-89 (277)
41 cd05006 SIS_GmhA Phosphoheptos 68.0 42 0.00092 29.8 9.0 23 94-116 99-122 (177)
42 cd08191 HHD 6-hydroxyhexanoate 67.8 30 0.00065 35.0 8.9 79 218-306 23-104 (386)
43 PF02896 PEP-utilizers_C: PEP- 67.7 9.2 0.0002 37.9 5.1 50 33-83 227-276 (293)
44 PRK14072 6-phosphofructokinase 67.7 8.2 0.00018 40.0 4.9 54 267-322 89-145 (416)
45 cd06349 PBP1_ABC_ligand_bindin 67.4 9.7 0.00021 36.5 5.1 55 256-312 42-96 (340)
46 PRK10444 UMP phosphatase; Prov 65.9 56 0.0012 31.2 9.9 32 48-83 75-106 (248)
47 cd06308 PBP1_sensor_kinase_lik 65.6 63 0.0014 29.5 10.0 89 220-316 2-90 (270)
48 PRK09189 uroporphyrinogen-III 64.8 32 0.0007 32.0 7.9 122 3-129 9-156 (240)
49 COG2099 CobK Precorrin-6x redu 64.7 30 0.00066 33.9 7.8 75 100-180 47-123 (257)
50 PF00762 Ferrochelatase: Ferro 64.3 23 0.0005 35.2 7.2 116 5-143 101-219 (316)
51 cd06312 PBP1_ABC_sugar_binding 64.1 56 0.0012 30.0 9.3 91 219-316 1-91 (271)
52 PLN02251 pyrophosphate-depende 63.7 13 0.00027 40.3 5.5 56 267-322 176-232 (568)
53 cd06331 PBP1_AmiC_like Type I 63.5 9.4 0.0002 36.6 4.2 55 256-312 42-96 (333)
54 PF06414 Zeta_toxin: Zeta toxi 63.2 14 0.00031 33.5 5.1 43 109-151 83-126 (199)
55 cd06344 PBP1_ABC_ligand_bindin 63.0 13 0.00028 35.8 5.0 56 255-312 40-95 (332)
56 cd06328 PBP1_SBP_like_2 Peripl 62.1 17 0.00037 35.1 5.7 64 256-321 43-107 (333)
57 TIGR03127 RuMP_HxlB 6-phospho 61.8 64 0.0014 28.6 8.9 23 94-116 70-93 (179)
58 cd06301 PBP1_rhizopine_binding 61.2 69 0.0015 29.2 9.3 88 220-316 2-90 (272)
59 cd06335 PBP1_ABC_ligand_bindin 61.1 15 0.00032 35.7 5.1 56 255-312 41-96 (347)
60 COG0276 HemH Protoheme ferro-l 60.5 55 0.0012 33.1 9.0 114 6-143 104-219 (320)
61 TIGR00715 precor6x_red precorr 60.3 35 0.00076 33.1 7.4 68 106-180 51-121 (256)
62 PRK00035 hemH ferrochelatase; 60.2 1E+02 0.0022 30.4 10.9 83 41-143 138-224 (333)
63 cd07948 DRE_TIM_HCS Saccharomy 60.1 1.7E+02 0.0037 28.3 12.1 125 5-151 23-161 (262)
64 PF02254 TrkA_N: TrkA-N domain 59.5 17 0.00037 29.5 4.5 73 100-180 2-77 (116)
65 cd06374 PBP1_mGluR_groupI Liga 58.9 41 0.00089 34.5 8.1 84 271-354 233-318 (472)
66 cd06367 PBP1_iGluR_NMDA N-term 58.8 29 0.00063 33.8 6.7 59 253-313 35-96 (362)
67 PRK06555 pyrophosphate--fructo 57.0 19 0.00042 37.4 5.3 46 268-313 99-147 (403)
68 cd06356 PBP1_Amide_Urea_BP_lik 56.5 13 0.00029 35.9 3.9 56 255-312 41-96 (334)
69 PLN03028 pyrophosphate--fructo 56.5 18 0.00039 39.5 5.2 55 268-322 160-215 (610)
70 cd06268 PBP1_ABC_transporter_L 56.3 24 0.00053 31.8 5.4 60 256-318 42-101 (298)
71 PRK12435 ferrochelatase; Provi 55.4 1.1E+02 0.0024 30.5 10.2 86 42-143 124-209 (311)
72 cd06338 PBP1_ABC_ligand_bindin 55.1 23 0.00049 33.9 5.2 60 256-317 46-105 (345)
73 TIGR02477 PFKA_PPi diphosphate 54.9 18 0.00039 39.0 4.8 56 267-322 147-203 (539)
74 cd06273 PBP1_GntR_like_1 This 54.8 1.4E+02 0.003 27.1 10.1 85 220-316 2-87 (268)
75 cd07766 DHQ_Fe-ADH Dehydroquin 54.7 70 0.0015 31.3 8.7 87 218-316 24-113 (332)
76 TIGR00274 N-acetylmuramic acid 54.6 26 0.00056 34.6 5.6 34 94-127 124-161 (291)
77 cd06267 PBP1_LacI_sugar_bindin 54.5 1.1E+02 0.0023 27.2 9.2 86 220-317 2-88 (264)
78 cd06318 PBP1_ABC_sugar_binding 54.5 1.4E+02 0.003 27.3 10.2 87 220-316 2-89 (282)
79 cd01413 SIR2_Af2 SIR2_Af2: Arc 53.3 31 0.00067 32.4 5.6 44 271-316 163-207 (222)
80 cd06345 PBP1_ABC_ligand_bindin 52.9 31 0.00066 33.3 5.7 63 256-320 42-105 (344)
81 TIGR01452 PGP_euk phosphoglyco 52.7 1.8E+02 0.0039 27.8 10.9 26 55-84 85-110 (279)
82 cd06339 PBP1_YraM_LppC_lipopro 52.4 68 0.0015 31.2 8.1 59 256-318 36-94 (336)
83 cd06346 PBP1_ABC_ligand_bindin 52.3 17 0.00037 34.6 3.9 56 255-312 41-97 (312)
84 COG1570 XseA Exonuclease VII, 51.5 67 0.0015 33.9 8.2 64 216-293 134-205 (440)
85 cd01080 NAD_bind_m-THF_DH_Cycl 51.5 24 0.00053 32.0 4.5 87 43-131 32-121 (168)
86 PRK10653 D-ribose transporter 51.3 1.8E+02 0.004 27.2 10.6 90 217-316 26-116 (295)
87 cd06323 PBP1_ribose_binding Pe 51.0 1.4E+02 0.003 26.9 9.4 81 228-317 9-90 (268)
88 cd00861 ProRS_anticodon_short 50.7 21 0.00047 27.8 3.6 41 110-153 22-64 (94)
89 cd06382 PBP1_iGluR_Kainate N-t 50.5 17 0.00037 34.7 3.6 53 257-312 39-92 (327)
90 PTZ00287 6-phosphofructokinase 49.8 23 0.0005 42.2 4.9 56 267-322 914-970 (1419)
91 COG0761 lytB 4-Hydroxy-3-methy 49.2 74 0.0016 31.9 7.7 103 108-242 173-283 (294)
92 PF00389 2-Hacid_dh: D-isomer 49.2 33 0.00072 28.9 4.8 68 58-130 1-71 (133)
93 PLN02884 6-phosphofructokinase 49.0 25 0.00055 36.5 4.7 52 269-322 131-185 (411)
94 cd06281 PBP1_LacI_like_5 Ligan 48.9 1.3E+02 0.0029 27.3 9.1 88 220-318 2-90 (269)
95 cd05005 SIS_PHI Hexulose-6-pho 48.5 1.4E+02 0.003 26.5 8.9 22 95-116 74-96 (179)
96 cd06343 PBP1_ABC_ligand_bindin 48.5 92 0.002 30.1 8.3 58 255-314 48-105 (362)
97 cd00765 Pyrophosphate_PFK Phos 48.0 29 0.00063 37.5 5.1 56 267-322 152-208 (550)
98 cd06355 PBP1_FmdD_like Peripla 47.7 23 0.0005 34.5 4.0 53 256-310 42-94 (348)
99 PRK06559 nicotinate-nucleotide 47.5 75 0.0016 31.7 7.5 103 23-130 167-273 (290)
100 PRK10838 spr outer membrane li 47.4 41 0.00088 31.4 5.4 74 4-105 65-140 (190)
101 cd06309 PBP1_YtfQ_like Peripla 47.3 1.2E+02 0.0026 27.8 8.5 80 228-316 9-89 (273)
102 PF13580 SIS_2: SIS domain; PD 47.1 25 0.00055 30.3 3.7 31 93-123 100-134 (138)
103 cd06329 PBP1_SBP_like_3 Peripl 46.5 18 0.0004 34.9 3.1 56 255-313 41-103 (342)
104 KOG2882 p-Nitrophenyl phosphat 46.2 53 0.0012 33.1 6.2 28 54-85 105-132 (306)
105 cd06315 PBP1_ABC_sugar_binding 46.1 1.7E+02 0.0036 27.3 9.4 88 219-316 2-90 (280)
106 PRK15317 alkyl hydroperoxide r 45.9 1.4E+02 0.003 31.4 9.6 52 25-80 120-171 (517)
107 cd06311 PBP1_ABC_sugar_binding 45.5 1.8E+02 0.0039 26.6 9.4 92 220-316 2-94 (274)
108 COG4821 Uncharacterized protei 45.4 65 0.0014 31.1 6.4 36 92-127 100-139 (243)
109 cd06330 PBP1_Arsenic_SBP_like 45.2 43 0.00092 32.1 5.4 58 256-316 42-100 (346)
110 COG1038 PycA Pyruvate carboxyl 45.1 56 0.0012 37.3 6.7 102 58-181 84-187 (1149)
111 cd08551 Fe-ADH iron-containing 45.1 1.1E+02 0.0024 30.5 8.5 77 218-304 24-103 (370)
112 COG1494 GlpX Fructose-1,6-bisp 44.8 14 0.0003 37.0 2.0 41 67-111 248-288 (332)
113 TIGR02634 xylF D-xylose ABC tr 44.7 1.4E+02 0.0029 28.5 8.7 85 224-317 4-89 (302)
114 cd06282 PBP1_GntR_like_2 Ligan 44.6 1.8E+02 0.004 26.1 9.2 77 230-316 11-88 (266)
115 PRK06683 hypothetical protein; 44.6 29 0.00062 28.0 3.4 42 280-321 26-67 (82)
116 cd01410 SIRT7 SIRT7: Eukaryoti 44.5 52 0.0011 30.7 5.6 45 270-316 146-191 (206)
117 PLN02449 ferrochelatase 44.2 1.5E+02 0.0033 31.7 9.6 70 57-143 243-312 (485)
118 cd06352 PBP1_NPR_GC_like Ligan 44.1 51 0.0011 32.3 5.8 54 256-311 43-96 (389)
119 PRK13602 putative ribosomal pr 44.0 31 0.00068 27.7 3.6 47 275-321 21-67 (82)
120 TIGR03190 benz_CoA_bzdN benzoy 43.7 1.2E+02 0.0026 30.8 8.5 107 34-151 201-321 (377)
121 PRK07085 diphosphate--fructose 43.5 31 0.00068 37.3 4.5 54 268-321 151-205 (555)
122 cd06327 PBP1_SBP_like_1 Peripl 43.3 38 0.00081 32.5 4.7 64 256-321 41-105 (334)
123 cd06337 PBP1_ABC_ligand_bindin 43.2 38 0.00082 33.1 4.8 55 256-312 44-98 (357)
124 cd01574 PBP1_LacI Ligand-bindi 43.0 2.1E+02 0.0046 25.8 9.3 87 220-317 2-89 (264)
125 cd06340 PBP1_ABC_ligand_bindin 42.8 50 0.0011 32.0 5.5 58 256-315 45-102 (347)
126 cd00363 PFK Phosphofructokinas 42.7 34 0.00074 34.4 4.4 47 267-313 78-127 (338)
127 TIGR03669 urea_ABC_arch urea A 42.4 30 0.00065 34.7 4.0 55 255-311 42-96 (374)
128 PF13380 CoA_binding_2: CoA bi 42.3 52 0.0011 27.7 4.9 98 4-131 14-114 (116)
129 COG0041 PurE Phosphoribosylcar 42.3 77 0.0017 29.1 6.1 31 100-152 35-65 (162)
130 cd01979 Pchlide_reductase_N Pc 42.2 3.9E+02 0.0084 27.2 12.5 105 24-129 118-233 (396)
131 TIGR03590 PseG pseudaminic aci 42.1 2.4E+02 0.0051 27.1 10.0 84 39-126 17-112 (279)
132 PF01726 LexA_DNA_bind: LexA D 42.1 28 0.00061 26.8 2.9 39 102-147 19-57 (65)
133 cd06306 PBP1_TorT-like TorT-li 41.7 1.9E+02 0.004 26.6 8.9 87 220-315 2-89 (268)
134 cd06363 PBP1_Taste_receptor Li 41.5 30 0.00066 34.6 3.9 32 282-313 106-137 (410)
135 PF15498 Dendrin: Nephrin and 41.5 5.7 0.00012 41.8 -1.3 33 99-131 378-410 (657)
136 PRK10355 xylF D-xylose transpo 41.5 2.4E+02 0.0053 27.4 10.1 89 218-316 26-115 (330)
137 PRK06975 bifunctional uroporph 41.4 1.3E+02 0.0029 33.0 9.0 116 4-124 13-167 (656)
138 PRK10886 DnaA initiator-associ 41.3 65 0.0014 30.0 5.7 47 269-318 100-147 (196)
139 cd06302 PBP1_LsrB_Quorum_Sensi 41.3 2.5E+02 0.0054 26.4 9.9 88 220-316 2-90 (298)
140 TIGR01470 cysG_Nterm siroheme 41.3 3E+02 0.0064 25.6 10.3 96 19-128 4-103 (205)
141 cd06348 PBP1_ABC_ligand_bindin 41.2 45 0.00097 32.0 4.9 55 256-312 42-96 (344)
142 COG1358 RPL8A Ribosomal protei 41.0 33 0.00071 29.7 3.5 46 277-322 39-85 (116)
143 PTZ00409 Sir2 (Silent Informat 40.9 54 0.0012 32.1 5.4 58 256-316 177-235 (271)
144 cd06313 PBP1_ABC_sugar_binding 40.9 1.5E+02 0.0033 27.3 8.3 87 220-316 2-89 (272)
145 PRK10877 protein disulfide iso 40.8 33 0.00072 32.5 3.8 31 122-152 114-144 (232)
146 cd06366 PBP1_GABAb_receptor Li 40.7 53 0.0011 31.6 5.3 58 255-314 40-97 (350)
147 cd06322 PBP1_ABC_sugar_binding 40.7 2.3E+02 0.005 25.6 9.3 81 227-316 8-89 (267)
148 cd01409 SIRT4 SIRT4: Eukaryoti 40.7 50 0.0011 31.9 5.1 46 269-316 194-240 (260)
149 PF00532 Peripla_BP_1: Peripla 40.6 2.9E+02 0.0064 26.3 10.3 90 219-320 3-92 (279)
150 cd06321 PBP1_ABC_sugar_binding 40.4 2E+02 0.0044 26.1 8.9 89 220-316 2-91 (271)
151 cd01540 PBP1_arabinose_binding 40.3 2E+02 0.0044 26.4 9.0 47 269-316 41-88 (289)
152 PRK15408 autoinducer 2-binding 40.3 2.2E+02 0.0047 28.2 9.6 90 218-317 24-115 (336)
153 cd06304 PBP1_BmpA_like Peripla 40.2 2.5E+02 0.0055 25.7 9.5 86 219-316 1-89 (260)
154 cd06350 PBP1_GPCR_family_C_lik 40.0 3.4E+02 0.0073 25.8 13.6 80 272-353 208-291 (348)
155 PRK00414 gmhA phosphoheptose i 40.0 76 0.0016 29.1 5.9 55 261-318 93-149 (192)
156 TIGR02764 spore_ybaN_pdaB poly 39.9 95 0.0021 27.8 6.5 45 39-83 79-125 (191)
157 PRK10014 DNA-binding transcrip 39.7 2.8E+02 0.006 26.4 10.0 89 218-317 65-154 (342)
158 cd06336 PBP1_ABC_ligand_bindin 39.7 45 0.00097 32.3 4.6 59 256-317 46-104 (347)
159 cd06578 HemD Uroporphyrinogen- 39.6 1.3E+02 0.0027 27.0 7.3 66 55-125 78-151 (239)
160 PF04392 ABC_sub_bind: ABC tra 39.6 68 0.0015 30.8 5.8 47 266-313 170-217 (294)
161 cd02518 GT2_SpsF SpsF is a gly 39.2 67 0.0014 29.5 5.5 45 117-161 88-135 (233)
162 PLN02564 6-phosphofructokinase 39.1 54 0.0012 35.0 5.3 54 269-322 164-218 (484)
163 cd01539 PBP1_GGBP Periplasmic 38.7 2.4E+02 0.0053 26.6 9.4 89 220-316 2-91 (303)
164 cd06357 PBP1_AmiC Periplasmic 38.6 41 0.00088 33.0 4.2 54 256-311 42-95 (360)
165 cd00419 Ferrochelatase_C Ferro 38.6 52 0.0011 28.7 4.4 37 96-143 17-53 (135)
166 cd06354 PBP1_BmpA_PnrA_like Pe 38.6 2.8E+02 0.006 25.7 9.6 78 228-316 12-90 (265)
167 PF13986 DUF4224: Domain of un 38.4 29 0.00064 25.3 2.4 26 70-105 20-45 (47)
168 PRK02287 hypothetical protein; 38.2 71 0.0015 29.6 5.4 49 72-126 20-71 (171)
169 PRK15404 leucine ABC transport 38.1 51 0.0011 32.7 4.8 54 256-312 68-121 (369)
170 KOG3043 Predicted hydrolase re 38.1 9.1 0.0002 37.1 -0.5 32 7-46 107-138 (242)
171 COG1832 Predicted CoA-binding 38.0 76 0.0016 28.6 5.3 67 56-123 17-101 (140)
172 cd06314 PBP1_tmGBP Periplasmic 37.9 2.7E+02 0.0058 25.4 9.3 86 220-316 2-88 (271)
173 TIGR03407 urea_ABC_UrtA urea A 37.6 42 0.00091 32.9 4.1 52 256-309 43-94 (359)
174 PRK13601 putative L7Ae-like ri 37.4 42 0.0009 27.2 3.3 41 280-320 23-63 (82)
175 PRK00002 aroB 3-dehydroquinate 37.3 1.4E+02 0.003 29.9 7.8 92 218-316 32-127 (358)
176 PF12850 Metallophos_2: Calcin 37.3 1.4E+02 0.003 24.8 6.8 98 43-160 16-125 (156)
177 TIGR03677 rpl7ae 50S ribosomal 37.0 53 0.0012 28.1 4.1 56 280-340 41-98 (117)
178 cd06324 PBP1_ABC_sugar_binding 36.9 2.2E+02 0.0047 27.0 8.7 77 230-316 12-91 (305)
179 PRK09701 D-allose transporter 36.7 2.8E+02 0.0062 26.4 9.6 91 218-316 25-116 (311)
180 PF13458 Peripla_BP_6: Peripla 36.7 38 0.00083 32.1 3.5 56 255-312 43-98 (343)
181 cd06372 PBP1_GC_G_like Ligand- 36.6 46 0.00099 32.9 4.2 63 256-320 43-106 (391)
182 PF01904 DUF72: Protein of unk 36.4 1.1E+02 0.0024 28.8 6.6 97 42-151 103-211 (230)
183 cd06347 PBP1_ABC_ligand_bindin 36.4 67 0.0015 30.2 5.1 57 256-315 42-99 (334)
184 COG4822 CbiK Cobalamin biosynt 36.3 1.2E+02 0.0027 29.5 6.8 44 100-151 37-80 (265)
185 COG3980 spsG Spore coat polysa 36.2 2E+02 0.0043 29.1 8.4 102 25-132 1-108 (318)
186 TIGR00441 gmhA phosphoheptose 36.1 96 0.0021 27.2 5.8 39 280-318 78-117 (154)
187 cd06296 PBP1_CatR_like Ligand- 35.9 2.1E+02 0.0044 25.9 8.1 45 269-316 42-87 (270)
188 PRK14138 NAD-dependent deacety 35.9 65 0.0014 30.8 5.0 58 255-315 155-213 (244)
189 cd00738 HGTP_anticodon HGTP an 35.6 69 0.0015 24.6 4.3 42 110-154 22-65 (94)
190 TIGR00423 radical SAM domain p 35.4 3.9E+02 0.0085 26.1 10.4 72 8-82 40-121 (309)
191 PF05159 Capsule_synth: Capsul 35.3 51 0.0011 31.2 4.2 33 283-316 1-33 (269)
192 TIGR02263 benz_CoA_red_C benzo 35.3 1.1E+02 0.0024 31.0 6.9 67 16-84 188-264 (380)
193 cd06292 PBP1_LacI_like_10 Liga 35.1 3.5E+02 0.0075 24.5 9.6 80 229-316 10-92 (273)
194 PRK08811 uroporphyrinogen-III 35.1 1.5E+02 0.0032 28.6 7.3 64 55-123 95-165 (266)
195 cd08188 Fe-ADH4 Iron-containin 35.0 1.1E+02 0.0025 30.7 6.8 79 218-306 29-110 (377)
196 cd06303 PBP1_LuxPQ_Quorum_Sens 35.0 2.4E+02 0.0053 26.0 8.6 45 267-313 45-90 (280)
197 cd06300 PBP1_ABC_sugar_binding 34.9 3.5E+02 0.0076 24.6 9.7 91 219-316 1-94 (272)
198 COG2861 Uncharacterized protei 34.9 1E+02 0.0022 30.3 6.1 71 68-158 141-219 (250)
199 cd06350 PBP1_GPCR_family_C_lik 34.8 69 0.0015 30.6 5.0 56 256-313 53-121 (348)
200 PRK14071 6-phosphofructokinase 34.8 59 0.0013 33.1 4.7 44 269-314 95-138 (360)
201 PTZ00286 6-phospho-1-fructokin 34.8 65 0.0014 34.1 5.2 55 268-322 163-218 (459)
202 TIGR02483 PFK_mixed phosphofru 34.7 69 0.0015 32.2 5.1 44 268-314 81-124 (324)
203 PRK10886 DnaA initiator-associ 34.6 1.7E+02 0.0036 27.3 7.4 23 94-116 107-130 (196)
204 cd08173 Gro1PDH Sn-glycerol-1- 34.5 1.8E+02 0.0039 28.8 8.0 87 218-317 26-112 (339)
205 cd07394 MPP_Vps29 Homo sapiens 34.3 2.8E+02 0.006 25.0 8.6 95 46-161 21-123 (178)
206 cd06371 PBP1_sensory_GC_DEF_li 34.3 57 0.0012 32.5 4.5 52 256-311 43-94 (382)
207 cd01538 PBP1_ABC_xylose_bindin 34.2 3.9E+02 0.0084 24.9 10.5 87 220-316 2-89 (288)
208 TIGR01081 mpl UDP-N-acetylmura 34.1 3.3E+02 0.0072 27.9 10.1 58 61-123 28-88 (448)
209 PTZ00468 phosphofructokinase f 34.1 57 0.0012 38.8 4.9 55 268-322 183-238 (1328)
210 cd01299 Met_dep_hydrolase_A Me 33.9 3.9E+02 0.0085 25.7 10.1 93 37-131 117-225 (342)
211 cd06359 PBP1_Nba_like Type I p 33.8 79 0.0017 30.3 5.3 57 256-314 40-96 (333)
212 cd06298 PBP1_CcpA_like Ligand- 33.8 3.4E+02 0.0073 24.4 9.2 85 220-316 2-87 (268)
213 TIGR01417 PTS_I_fam phosphoeno 33.8 74 0.0016 34.4 5.5 50 33-83 474-523 (565)
214 COG4007 Predicted dehydrogenas 33.6 52 0.0011 32.9 3.9 89 37-136 32-128 (340)
215 COG2388 Predicted acetyltransf 33.5 36 0.00079 28.7 2.5 18 112-130 65-82 (99)
216 PF15608 PELOTA_1: PELOTA RNA 33.3 77 0.0017 26.9 4.4 38 273-311 47-84 (100)
217 COG1737 RpiR Transcriptional r 33.2 2.1E+02 0.0045 27.7 8.1 59 56-115 131-197 (281)
218 cd06341 PBP1_ABC_ligand_bindin 33.1 2.5E+02 0.0055 26.7 8.6 57 256-316 42-99 (341)
219 cd06305 PBP1_methylthioribose_ 33.0 3.7E+02 0.008 24.3 9.6 87 220-316 2-89 (273)
220 TIGR03151 enACPred_II putative 33.0 83 0.0018 31.1 5.3 49 97-150 87-135 (307)
221 cd01412 SIRT5_Af1_CobB SIRT5_A 32.9 96 0.0021 28.9 5.5 43 272-316 157-200 (224)
222 PF01380 SIS: SIS domain SIS d 32.6 67 0.0014 26.2 4.0 42 95-136 52-97 (131)
223 cd05014 SIS_Kpsf KpsF-like pro 32.6 87 0.0019 25.7 4.7 43 280-322 46-89 (128)
224 PRK00481 NAD-dependent deacety 32.5 89 0.0019 29.6 5.3 44 271-316 169-213 (242)
225 KOG2947 Carbohydrate kinase [C 32.4 51 0.0011 32.7 3.6 64 216-288 129-192 (308)
226 cd06269 PBP1_glutamate_recepto 32.4 1.1E+02 0.0025 27.5 5.8 60 256-316 42-104 (298)
227 PRK13914 invasion associated s 32.4 85 0.0018 33.5 5.5 69 7-104 367-437 (481)
228 cd00858 GlyRS_anticodon GlyRS 32.1 70 0.0015 26.8 4.1 42 109-154 45-88 (121)
229 cd01542 PBP1_TreR_like Ligand- 32.0 3.7E+02 0.0081 24.0 9.2 84 221-316 3-87 (259)
230 TIGR02638 lactal_redase lactal 32.0 2.2E+02 0.0047 28.8 8.3 79 218-306 30-111 (379)
231 PF14359 DUF4406: Domain of un 31.9 62 0.0014 26.6 3.6 32 280-311 58-90 (92)
232 cd00763 Bacterial_PFK Phosphof 31.8 74 0.0016 31.9 4.8 43 267-313 78-121 (317)
233 TIGR02482 PFKA_ATP 6-phosphofr 31.8 81 0.0018 31.4 5.0 43 268-313 78-121 (301)
234 TIGR03863 PQQ_ABC_bind ABC tra 31.7 56 0.0012 32.6 3.9 52 257-312 37-88 (347)
235 cd01541 PBP1_AraR Ligand-bindi 31.6 4E+02 0.0086 24.2 9.4 85 220-316 2-92 (273)
236 PLN02424 ketopantoate hydroxym 31.5 1.8E+02 0.004 29.6 7.5 99 27-131 98-207 (332)
237 PRK15461 NADH-dependent gamma- 31.5 3.1E+02 0.0066 26.6 8.9 94 42-147 13-116 (296)
238 cd06332 PBP1_aromatic_compound 31.4 83 0.0018 29.6 4.9 58 256-316 40-98 (333)
239 cd06334 PBP1_ABC_ligand_bindin 31.3 58 0.0013 32.0 3.9 56 256-314 42-97 (351)
240 cd06358 PBP1_NHase Type I peri 31.2 55 0.0012 31.4 3.7 54 256-312 42-95 (333)
241 cd00296 SIR2 SIR2 superfamily 31.1 1.2E+02 0.0025 27.8 5.7 48 269-318 159-207 (222)
242 cd01917 ACS_2 Acetyl-CoA synth 31.0 76 0.0016 31.7 4.6 40 112-151 112-161 (287)
243 PTZ00408 NAD-dependent deacety 31.0 93 0.002 29.9 5.2 44 273-317 165-209 (242)
244 TIGR00732 dprA DNA protecting 30.5 90 0.002 29.5 4.9 36 281-316 155-190 (220)
245 cd06270 PBP1_GalS_like Ligand 30.3 3.2E+02 0.0069 24.7 8.5 46 268-316 41-87 (268)
246 cd02201 FtsZ_type1 FtsZ is a G 30.1 1.4E+02 0.003 29.4 6.3 44 271-315 75-122 (304)
247 PRK13938 phosphoheptose isomer 30.1 1.2E+02 0.0027 28.1 5.7 55 261-318 95-151 (196)
248 TIGR01357 aroB 3-dehydroquinat 30.0 2.2E+02 0.0047 28.3 7.7 92 218-316 21-116 (344)
249 cd08175 G1PDH Glycerol-1-phosp 30.0 2.1E+02 0.0045 28.4 7.6 42 273-317 73-114 (348)
250 PRK13937 phosphoheptose isomer 29.8 1.4E+02 0.003 27.1 5.9 39 280-318 105-144 (188)
251 PRK06830 diphosphate--fructose 29.8 80 0.0017 33.3 4.8 54 269-322 160-214 (443)
252 TIGR02873 spore_ylxY probable 29.5 1.6E+02 0.0035 28.6 6.6 82 57-150 178-263 (268)
253 cd08186 Fe-ADH8 Iron-containin 29.4 1.8E+02 0.0038 29.5 7.1 79 218-306 27-109 (383)
254 PF04273 DUF442: Putative phos 29.3 3.5E+02 0.0076 22.9 8.6 85 57-154 8-96 (110)
255 TIGR03310 matur_ygfJ molybdenu 29.3 1.8E+02 0.0038 25.3 6.3 39 119-157 92-135 (188)
256 cd05710 SIS_1 A subgroup of th 29.2 1E+02 0.0022 25.7 4.6 39 280-318 46-85 (120)
257 PRK13936 phosphoheptose isomer 29.0 1.8E+02 0.004 26.6 6.6 38 280-317 110-148 (197)
258 cd06360 PBP1_alkylbenzenes_lik 28.9 1.2E+02 0.0026 28.7 5.5 59 256-317 40-99 (336)
259 PRK09860 putative alcohol dehy 28.7 1.6E+02 0.0034 30.0 6.6 79 218-306 32-113 (383)
260 cd06836 PLPDE_III_ODC_DapDC_li 28.7 1.6E+02 0.0035 29.7 6.6 71 66-139 38-113 (379)
261 cd08189 Fe-ADH5 Iron-containin 28.6 3.1E+02 0.0067 27.6 8.7 79 218-306 27-108 (374)
262 PRK04175 rpl7ae 50S ribosomal 28.5 87 0.0019 27.0 4.1 56 280-340 45-102 (122)
263 PRK10624 L-1,2-propanediol oxi 28.5 1.9E+02 0.0041 29.2 7.2 79 218-306 31-112 (382)
264 cd01407 SIR2-fam SIR2 family o 28.4 1E+02 0.0023 28.6 4.9 45 270-316 158-203 (218)
265 cd02191 FtsZ FtsZ is a GTPase 28.2 1.5E+02 0.0032 29.4 6.2 45 271-316 75-123 (303)
266 cd06294 PBP1_ycjW_transcriptio 28.2 4.1E+02 0.009 23.8 8.8 46 269-317 47-93 (270)
267 PTZ00287 6-phosphofructokinase 28.1 80 0.0017 37.9 4.8 55 268-322 258-313 (1419)
268 cd06381 PBP1_iGluR_delta_like 28.1 64 0.0014 32.3 3.7 55 257-314 39-93 (363)
269 PRK15395 methyl-galactoside AB 28.0 4.5E+02 0.0098 25.4 9.5 91 218-317 25-116 (330)
270 COG0205 PfkA 6-phosphofructoki 28.0 73 0.0016 32.5 4.0 43 269-313 82-124 (347)
271 KOG1056 Glutamate-gated metabo 27.9 4.1E+02 0.009 30.6 10.1 217 118-355 83-326 (878)
272 cd06333 PBP1_ABC-type_HAAT_lik 27.9 1.5E+02 0.0033 27.8 6.1 59 256-317 41-100 (312)
273 PF00919 UPF0004: Uncharacteri 27.8 3.5E+02 0.0076 22.3 7.9 57 68-151 17-76 (98)
274 PF01380 SIS: SIS domain SIS d 27.7 99 0.0022 25.1 4.2 55 262-318 35-91 (131)
275 cd02973 TRX_GRX_like Thioredox 27.4 2E+02 0.0043 20.8 5.4 46 25-74 3-48 (67)
276 PRK06978 nicotinate-nucleotide 27.4 2.8E+02 0.0061 27.8 7.9 99 24-129 177-280 (294)
277 cd06299 PBP1_LacI_like_13 Liga 27.4 4.3E+02 0.0093 23.7 8.7 85 220-316 2-87 (265)
278 TIGR01489 DKMTPPase-SF 2,3-dik 27.4 2.9E+02 0.0062 23.7 7.3 18 136-153 153-171 (188)
279 cd05006 SIS_GmhA Phosphoheptos 27.1 1.7E+02 0.0036 26.0 5.8 38 280-317 100-138 (177)
280 cd06289 PBP1_MalI_like Ligand- 27.0 4.6E+02 0.01 23.4 9.6 86 220-316 2-88 (268)
281 PF00465 Fe-ADH: Iron-containi 26.9 1.1E+02 0.0024 30.5 5.1 78 219-306 23-103 (366)
282 cd06316 PBP1_ABC_sugar_binding 26.9 4.6E+02 0.01 24.3 9.1 88 219-316 1-90 (294)
283 cd08180 PDD 1,3-propanediol de 26.9 3.3E+02 0.0071 26.9 8.4 88 218-316 23-118 (332)
284 cd08176 LPO Lactadehyde:propan 26.9 2E+02 0.0043 29.0 6.9 78 218-305 29-109 (377)
285 PRK10669 putative cation:proto 26.8 84 0.0018 33.3 4.4 71 97-175 418-491 (558)
286 TIGR01511 ATPase-IB1_Cu copper 26.6 2.5E+02 0.0054 30.1 7.9 44 109-154 433-476 (562)
287 PF10096 DUF2334: Uncharacteri 26.5 1.2E+02 0.0026 28.9 5.1 63 100-163 2-86 (243)
288 PRK03803 murD UDP-N-acetylmura 26.5 4.9E+02 0.011 26.5 9.8 92 62-157 35-147 (448)
289 COG2242 CobL Precorrin-6B meth 26.4 1.2E+02 0.0026 28.5 4.8 75 90-165 96-174 (187)
290 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.3 1.3E+02 0.0027 24.7 4.6 39 280-318 45-84 (126)
291 PRK03202 6-phosphofructokinase 26.3 98 0.0021 31.1 4.6 43 267-313 79-122 (320)
292 PRK05742 nicotinate-nucleotide 26.3 1.4E+02 0.003 29.5 5.5 100 24-129 161-264 (277)
293 PF00455 DeoRC: DeoR C termina 26.2 66 0.0014 28.6 3.1 63 94-163 17-81 (161)
294 KOG2244 Highly conserved prote 26.2 67 0.0015 35.1 3.5 64 280-343 698-768 (786)
295 TIGR00290 MJ0570_dom MJ0570-re 26.2 1.7E+02 0.0037 28.0 6.0 52 102-153 40-94 (223)
296 PRK11657 dsbG disulfide isomer 26.2 77 0.0017 30.4 3.7 29 122-150 124-153 (251)
297 cd08190 HOT Hydroxyacid-oxoaci 26.0 2.4E+02 0.0053 28.9 7.5 79 218-306 24-105 (414)
298 cd06373 PBP1_NPR_like Ligand b 26.0 1E+02 0.0022 30.4 4.7 54 256-311 44-101 (396)
299 cd08177 MAR Maleylacetate redu 25.9 1.8E+02 0.0039 28.8 6.3 44 272-317 68-111 (337)
300 PF01513 NAD_kinase: ATP-NAD k 25.9 62 0.0014 31.4 3.0 24 219-242 1-26 (285)
301 COG2454 Uncharacterized conser 25.9 3.5E+02 0.0076 26.0 7.8 47 39-85 112-168 (211)
302 PRK11337 DNA-binding transcrip 25.8 1.6E+02 0.0035 28.1 5.9 59 263-322 170-229 (292)
303 PRK10537 voltage-gated potassi 25.6 1.3E+02 0.0028 31.0 5.4 74 97-180 241-317 (393)
304 PRK06464 phosphoenolpyruvate s 25.5 1.1E+02 0.0025 34.4 5.3 48 35-83 723-771 (795)
305 TIGR02884 spore_pdaA delta-lac 25.5 2.2E+02 0.0047 26.6 6.5 72 4-83 139-219 (224)
306 PRK11302 DNA-binding transcrip 25.4 2.7E+02 0.0058 26.3 7.2 82 40-123 115-206 (284)
307 cd06368 PBP1_iGluR_non_NMDA_li 25.1 1.3E+02 0.0027 28.5 4.9 49 264-315 46-94 (324)
308 COG0104 PurA Adenylosuccinate 25.0 1.1E+02 0.0023 32.2 4.6 82 70-151 82-223 (430)
309 COG5016 Pyruvate/oxaloacetate 24.9 2.4E+02 0.0051 30.0 7.0 119 3-128 93-233 (472)
310 COG1139 Uncharacterized conser 24.8 4.8E+02 0.01 27.9 9.2 113 24-145 78-193 (459)
311 PRK10329 glutaredoxin-like pro 24.8 3.4E+02 0.0075 21.2 6.6 71 25-116 3-73 (81)
312 cd06376 PBP1_mGluR_groupIII Li 24.4 5.1E+02 0.011 26.4 9.5 79 273-353 222-303 (463)
313 cd08193 HVD 5-hydroxyvalerate 24.4 3.7E+02 0.0081 27.0 8.4 77 218-304 27-106 (376)
314 PF00365 PFK: Phosphofructokin 24.3 50 0.0011 32.4 2.1 43 269-313 80-122 (282)
315 cd06276 PBP1_FucR_like Ligand- 24.3 1.7E+02 0.0036 27.0 5.5 45 270-316 41-85 (247)
316 PRK05301 pyrroloquinoline quin 24.2 7.2E+02 0.016 24.8 11.7 42 98-147 116-157 (378)
317 TIGR00824 EIIA-man PTS system, 24.2 59 0.0013 27.5 2.2 34 25-63 2-35 (116)
318 cd04795 SIS SIS domain. SIS (S 24.0 1.5E+02 0.0033 22.3 4.3 35 280-314 46-81 (87)
319 TIGR02144 LysX_arch Lysine bio 23.9 2.3E+02 0.005 26.5 6.4 59 66-124 11-77 (280)
320 PRK00414 gmhA phosphoheptose i 23.9 5.6E+02 0.012 23.4 9.2 33 95-127 110-146 (192)
321 cd06365 PBP1_Pheromone_recepto 23.6 6.6E+02 0.014 25.9 10.2 118 218-355 173-304 (469)
322 PRK11177 phosphoenolpyruvate-p 23.4 1.5E+02 0.0032 32.2 5.6 51 32-83 474-524 (575)
323 cd05013 SIS_RpiR RpiR-like pro 23.4 1.6E+02 0.0035 23.8 4.7 44 280-323 59-103 (139)
324 cd06353 PBP1_BmpA_Med_like Per 23.3 3.2E+02 0.007 25.8 7.3 44 266-313 42-86 (258)
325 cd06286 PBP1_CcpB_like Ligand- 23.3 5.5E+02 0.012 23.0 8.8 79 228-318 9-88 (260)
326 COG2871 NqrF Na+-transporting 23.2 56 0.0012 33.2 2.2 24 57-80 376-399 (410)
327 cd03130 GATase1_CobB Type 1 gl 23.2 4.9E+02 0.011 23.8 8.3 42 94-148 38-79 (198)
328 cd00544 CobU Adenosylcobinamid 23.2 68 0.0015 29.0 2.5 40 285-324 2-41 (169)
329 PRK11557 putative DNA-binding 23.1 4.3E+02 0.0094 25.0 8.2 82 40-123 115-206 (278)
330 cd06362 PBP1_mGluR Ligand bind 23.1 95 0.002 31.4 3.9 30 282-311 102-131 (452)
331 TIGR01279 DPOR_bchN light-inde 23.1 8.2E+02 0.018 25.0 13.4 103 24-129 115-231 (407)
332 PF03698 UPF0180: Uncharacteri 23.0 2E+02 0.0043 23.5 4.9 19 99-117 58-77 (80)
333 cd06297 PBP1_LacI_like_12 Liga 23.0 5.9E+02 0.013 23.3 9.0 45 269-316 42-87 (269)
334 cd06284 PBP1_LacI_like_6 Ligan 22.8 5.5E+02 0.012 22.9 9.0 84 220-316 2-86 (267)
335 cd06280 PBP1_LacI_like_4 Ligan 22.8 5.7E+02 0.012 23.1 9.2 85 220-317 2-87 (263)
336 COG0329 DapA Dihydrodipicolina 22.8 4.1E+02 0.0089 26.2 8.1 105 226-338 52-163 (299)
337 cd05005 SIS_PHI Hexulose-6-pho 22.7 1.5E+02 0.0032 26.3 4.6 40 280-319 74-114 (179)
338 cd03108 AdSS Adenylosuccinate 22.7 1.3E+02 0.0028 31.0 4.7 41 105-151 129-169 (363)
339 TIGR01481 ccpA catabolite cont 22.5 6.6E+02 0.014 23.7 9.5 87 218-316 60-147 (329)
340 cd08185 Fe-ADH1 Iron-containin 22.5 3.2E+02 0.0069 27.5 7.4 78 218-305 26-107 (380)
341 PRK08562 rpl32e 50S ribosomal 22.5 1.2E+02 0.0025 26.9 3.7 42 64-125 78-123 (125)
342 TIGR01418 PEP_synth phosphoeno 22.5 1.5E+02 0.0033 33.3 5.6 48 35-83 716-764 (782)
343 cd06307 PBP1_uncharacterized_s 22.4 4.7E+02 0.01 23.8 8.1 87 220-315 2-91 (275)
344 cd06375 PBP1_mGluR_groupII Lig 22.1 4.5E+02 0.0098 27.1 8.6 81 272-354 222-303 (458)
345 TIGR03882 cyclo_dehyd_2 bacter 22.1 2.6E+02 0.0057 25.7 6.3 77 69-163 63-157 (193)
346 PRK12418 cysteinyl-tRNA synthe 22.0 1.2E+02 0.0025 31.5 4.2 84 57-149 11-124 (384)
347 PRK01438 murD UDP-N-acetylmura 21.9 2.6E+02 0.0056 28.8 6.8 87 24-123 16-106 (480)
348 PRK10423 transcriptional repre 21.9 6.7E+02 0.014 23.5 9.2 88 218-316 57-145 (327)
349 PF08485 Polysacc_syn_2C: Poly 21.8 28 0.00062 25.8 -0.1 12 288-299 21-32 (48)
350 PF03358 FMN_red: NADPH-depend 21.7 1.1E+02 0.0024 26.0 3.5 23 284-306 3-26 (152)
351 PRK02649 ppnK inorganic polyph 21.6 1.2E+02 0.0027 30.1 4.2 34 275-314 63-99 (305)
352 cd08172 GlyDH-like1 Glycerol d 21.6 3.2E+02 0.0068 27.2 7.2 35 280-316 75-109 (347)
353 cd01465 vWA_subgroup VWA subgr 21.5 1.1E+02 0.0024 26.1 3.4 30 292-321 139-168 (170)
354 cd06384 PBP1_NPR_B Ligand-bind 21.5 1.5E+02 0.0033 29.4 5.0 53 256-311 44-101 (399)
355 COG0773 MurC UDP-N-acetylmuram 21.5 2.5E+02 0.0055 29.9 6.6 91 62-165 37-128 (459)
356 cd06325 PBP1_ABC_uncharacteriz 21.4 5.5E+02 0.012 23.2 8.3 89 220-316 2-90 (281)
357 cd01575 PBP1_GntR Ligand-bindi 21.4 2.6E+02 0.0057 25.1 6.1 42 272-316 46-87 (268)
358 cd05017 SIS_PGI_PMI_1 The memb 21.3 1.5E+02 0.0032 24.6 4.1 39 280-318 42-81 (119)
359 PRK12310 hydroxylamine reducta 21.3 1.1E+02 0.0023 32.4 3.8 59 57-132 126-205 (433)
360 cd06351 PBP1_iGluR_N_LIVBP_lik 21.1 1.7E+02 0.0036 27.3 4.9 38 281-318 61-98 (328)
361 PRK08673 3-deoxy-7-phosphohept 20.9 8.9E+02 0.019 24.6 11.3 48 257-312 158-205 (335)
362 cd08171 GlyDH-like2 Glycerol d 20.8 3.9E+02 0.0084 26.5 7.6 36 280-317 77-112 (345)
363 PF01248 Ribosomal_L7Ae: Ribos 20.8 67 0.0015 25.6 1.8 43 277-319 27-70 (95)
364 cd04908 ACT_Bt0572_1 N-termina 20.7 1.4E+02 0.0031 22.0 3.5 48 69-123 17-65 (66)
365 PRK11061 fused phosphoenolpyru 20.7 1.7E+02 0.0037 32.8 5.5 51 32-83 640-690 (748)
366 cd08192 Fe-ADH7 Iron-containin 20.7 3.2E+02 0.0069 27.4 7.0 77 218-305 25-105 (370)
367 TIGR00854 pts-sorbose PTS syst 20.7 3.6E+02 0.0077 24.1 6.6 79 36-122 58-139 (151)
368 TIGR00106 uncharacterized prot 20.7 1.2E+02 0.0026 25.3 3.3 56 3-61 18-73 (97)
369 PF04392 ABC_sub_bind: ABC tra 20.7 4.2E+02 0.0092 25.3 7.6 104 229-339 9-112 (294)
370 PF00702 Hydrolase: haloacid d 20.6 2.8E+02 0.0061 24.2 6.0 67 68-153 133-204 (215)
371 PRK11425 PTS system N-acetylga 20.6 4E+02 0.0087 23.9 7.0 79 36-123 60-141 (157)
372 cd02513 CMP-NeuAc_Synthase CMP 20.6 5.3E+02 0.011 22.9 7.9 39 118-156 99-139 (223)
373 PF01738 DLH: Dienelactone hyd 20.6 43 0.00093 30.2 0.7 16 32-47 102-117 (218)
374 cd08182 HEPD Hydroxyethylphosp 20.6 3E+02 0.0065 27.5 6.8 75 218-304 24-100 (367)
375 cd01994 Alpha_ANH_like_IV This 20.6 2.8E+02 0.006 25.6 6.1 51 104-154 42-98 (194)
376 PRK14619 NAD(P)H-dependent gly 20.4 5.2E+02 0.011 25.0 8.3 135 134-312 17-152 (308)
377 PRK03378 ppnK inorganic polyph 20.4 1.4E+02 0.003 29.5 4.3 38 275-315 58-95 (292)
378 TIGR02726 phenyl_P_delta pheny 20.4 5.6E+02 0.012 23.1 7.9 56 100-155 53-109 (169)
379 TIGR03127 RuMP_HxlB 6-phospho 20.4 1.8E+02 0.0039 25.7 4.6 39 280-318 71-110 (179)
380 PF12146 Hydrolase_4: Putative 20.4 1.4E+02 0.003 23.5 3.5 49 99-166 17-65 (79)
381 PRK02842 light-independent pro 20.3 7.1E+02 0.015 25.6 9.6 105 24-129 129-243 (427)
382 PRK05333 NAD-dependent deacety 20.3 2.2E+02 0.0047 27.8 5.6 45 269-315 204-249 (285)
383 TIGR00762 DegV EDD domain prot 20.3 4.4E+02 0.0094 25.3 7.6 44 108-152 43-86 (275)
384 COG1416 Uncharacterized conser 20.3 5.8E+02 0.013 22.2 7.7 98 24-148 3-110 (112)
385 PRK02006 murD UDP-N-acetylmura 20.2 3.6E+02 0.0077 28.1 7.5 72 45-123 22-101 (498)
386 TIGR02884 spore_pdaA delta-lac 20.2 7E+02 0.015 23.1 9.4 26 58-83 132-157 (224)
387 cd06272 PBP1_hexuronate_repres 20.1 6.4E+02 0.014 22.6 8.6 83 220-317 2-84 (261)
388 cd06277 PBP1_LacI_like_1 Ligan 20.0 6.5E+02 0.014 22.7 9.0 77 228-316 12-89 (268)
389 COG4770 Acetyl/propionyl-CoA c 20.0 1.3E+02 0.0029 33.0 4.3 155 5-182 13-182 (645)
No 1
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=100.00 E-value=1.9e-104 Score=797.74 Aligned_cols=340 Identities=82% Similarity=1.277 Sum_probs=325.2
Q ss_pred CCccc-chhHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCc
Q 018062 1 MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV 79 (361)
Q Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV 79 (361)
|+++| +|+||+.||++|+.+.||+|+|+||+++||||||+|||++|+++++++++++||+||||||||+|+++|+++||
T Consensus 81 ~~~~y~~s~li~~~r~~~~~~~~g~m~I~LA~~~GFC~GVeRAV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV 160 (460)
T PLN02821 81 MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNV 160 (460)
T ss_pred hhhhhhccHHHHHHHhCCCeEEecceEEEEeCCCCCCccHHHHHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCC
Confidence 57899 99999999999999999999999999999999999999999999887777899999999999999999999999
Q ss_pred EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceee
Q 018062 80 QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (361)
Q Consensus 80 ~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~ 159 (361)
+++++.++.++++++++|++|||||||+||++++.|+++|+.|||||||||+|+|+.|+++.++||++||+|+++||||+
T Consensus 161 ~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~ 240 (460)
T PLN02821 161 QFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETV 240 (460)
T ss_pred EEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence 99997666667899998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcEEEEcChhhhHhhhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHH
Q 018062 160 ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL 239 (361)
Q Consensus 160 gi~g~a~~~ivv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~ 239 (361)
|+.||+++++||.+++|++++++||.++.+||+++++++|+++|+++++++|||..+++|+++++||||+.++|++|++.
T Consensus 241 gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~ 320 (460)
T PLN02821 241 ATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL 320 (460)
T ss_pred ecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999876778999999999999999999999
Q ss_pred HHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCC
Q 018062 240 VEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 319 (361)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL 319 (361)
|+++++++++|.+.+.|+.++||||+||++||+|+.+|++.++|+||||||+|||||+||+|||++.|+|+||||+++||
T Consensus 321 l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI 400 (460)
T PLN02821 321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERI 400 (460)
T ss_pred HHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHc
Confidence 99999999999888899999999999999999999999646899999999999999999999999999999999999999
Q ss_pred CCCCcccccc-----------c-cceeEEEeee
Q 018062 320 GPGNKIAYKL-----------M-VCVNILNFTC 340 (361)
Q Consensus 320 ~~~~~~~~~~-----------~-~~~~~~~~~~ 340 (361)
++.|.|.|++ | .+...+|||+
T Consensus 401 ~~~~~i~h~~~~~e~~~~~~wl~~~~~~VGITA 433 (460)
T PLN02821 401 GPGNTIAHKLNHGELVEKENWLPEGPVTIGVTS 433 (460)
T ss_pred CcccccccccccchhhhhHHHhccCCCEEEEec
Confidence 9999999987 4 3467899997
No 2
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=5.7e-101 Score=762.96 Aligned_cols=334 Identities=64% Similarity=1.080 Sum_probs=311.8
Q ss_pred CCcccchhHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcE
Q 018062 1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQ 80 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~ 80 (361)
++.+|+|+||++|+++|+.+.+|.|+|++|+++||||||+|||++|+++++.+++++||+||||||||+|+++|+++||.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~m~I~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~vytlG~IIHNp~Vv~~L~~~Gv~ 93 (387)
T PRK13371 14 LETAYQSSLIQSIRENGYVLQFGDVTIKLARAFGFCWGVERAVAMAYETRRHFPDERIWITNEIIHNPSVNQHLREMGVR 93 (387)
T ss_pred HHHHHhHHHHHHHHhCCCeeeeCCeEEEEeCCCCCCccHHHHHHHHHHHHhhcCCCCeEEecCCcCCHHHHHHHHhCCCE
Confidence 35799999999999999999999999999999999999999999999988766567999999999999999999999999
Q ss_pred EecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeee
Q 018062 81 NIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (361)
Q Consensus 81 ~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~g 160 (361)
++++.++.++++++++|++|||||||+||+++++|+++|+.|||||||+|+|+|++|++++++||+|||+|+++||||+|
T Consensus 94 ~v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~~~~Gy~iIIiG~~~HpEV~G 173 (387)
T PRK13371 94 FIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRA 173 (387)
T ss_pred EEcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHHHhCCCEEEEEcCCCCcceee
Confidence 99865444568899889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcEEEEcChhhhHhhhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHH
Q 018062 161 TASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240 (361)
Q Consensus 161 i~g~a~~~ivv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l 240 (361)
+.||+++++||++++|++++++++.++ .++..|+++|..+.+++++|.++.+|+++++||||+.++|.+|++.|
T Consensus 174 i~g~a~~~~VV~~~~e~~~l~~~~~~~------~~~~~~~~~f~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~iv~~l 247 (387)
T PRK13371 174 TSSFAGTYLVVLDLEEAQYVADYILGG------GDREEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIGKLF 247 (387)
T ss_pred eccccCceEEECCHHHHHHHhhhhccc------cchhhhhhhhhhcccccCCccCCCccEEEEECCCCcHHHHHHHHHHH
Confidence 999997789999999999998888776 57888999999999999987655689999999999999999999999
Q ss_pred HHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
+++|+.+++|.+...+++++||||+||++||+|+++||+++||+||||||+|||||+||++||++.|++|||||+++||+
T Consensus 248 ~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~ 327 (387)
T PRK13371 248 ERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERIL 327 (387)
T ss_pred HHhhhhhcCCccccccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcC
Confidence 99999998877667789999999999999999999997447999999999999999999999999999999999999999
Q ss_pred CCCccccccc------------cceeEEEeee
Q 018062 321 PGNKIAYKLM------------VCVNILNFTC 340 (361)
Q Consensus 321 ~~~~~~~~~~------------~~~~~~~~~~ 340 (361)
+++.|.|+++ .+...+|||+
T Consensus 328 ~~~~i~h~~~~~~~~~t~~wl~~~~~~VGITA 359 (387)
T PRK13371 328 SGNSIEHKPLGKELVVTENWLPEGPVTVGITS 359 (387)
T ss_pred CccccccccccchhhhhhhhhccCCCEEEEec
Confidence 9999999866 4577999997
No 3
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=3.8e-90 Score=664.21 Aligned_cols=261 Identities=31% Similarity=0.532 Sum_probs=243.2
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 018062 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (361)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrA 104 (361)
|+|++|+++||||||+|||++|++++..+++++||+||||||||+|+++|+++||.++++ ++++++++|++|||||
T Consensus 1 M~I~lA~~~GFC~GV~rAi~~a~~~~~~~~~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~----~~~~~v~~~~~ViirA 76 (281)
T PRK12360 1 MKILIAKNAGFCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEE----SEIDSLKEGDVVIIRS 76 (281)
T ss_pred CEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEecCCcCCHHHHHHHHHCcCEEECc----CchhhCCCCCEEEEeC
Confidence 899999999999999999999999876655679999999999999999999999999942 1478888899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhhHhhhcc
Q 018062 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (361)
Q Consensus 105 HGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~-~~ivv~~~~e~~~~~~~ 183 (361)
||+||+++++|+++|+.|||||||||+|+|+.|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+
T Consensus 77 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l--- 153 (281)
T PRK12360 77 HGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVENI--- 153 (281)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhhC---
Confidence 99999999999999999999999999999999999999999999999999999999999997 57899999998765
Q ss_pred ccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccc
Q 018062 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263 (361)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTI 263 (361)
++ .+++++++||||+.++|++|+++|++++ .+++++|||
T Consensus 154 ----------------------------~~---~~kv~~vsQTT~~~~~~~~iv~~l~~~~----------~~~~v~~TI 192 (281)
T PRK12360 154 ----------------------------PF---LDKACVVAQTTIIPELWEDILNVIKLKS----------KELVFFNTI 192 (281)
T ss_pred ----------------------------cc---ccCEEEEECCCCcHHHHHHHHHHHHHhC----------cccccCCCc
Confidence 11 2689999999999999999999998743 357789999
Q ss_pred cHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEeee
Q 018062 264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTC 340 (361)
Q Consensus 264 C~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~ 340 (361)
|+||++||+|+++|| ++||+||||||+|||||+||+++|++.|++|||||+++||+++ |+.+.+.+|||+
T Consensus 193 C~aT~~RQ~a~~~La-~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~~------~~~~~~~VGita 262 (281)
T PRK12360 193 CSATKKRQESAKELS-KEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDLE------MLKDYKIIGITA 262 (281)
T ss_pred chhhhhHHHHHHHHH-HhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCHH------HhCCCCEEEEEc
Confidence 999999999999998 7999999999999999999999999999999999999999998 999999999997
No 4
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=100.00 E-value=1.8e-89 Score=659.28 Aligned_cols=259 Identities=37% Similarity=0.591 Sum_probs=239.8
Q ss_pred EEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCc-EEecCCccccccccccCCCEEEEcC
Q 018062 26 KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV-QNIPVEEGKKQFDVVNKGDVVVLPA 104 (361)
Q Consensus 26 kI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV-~~v~~~~~~~~l~el~~g~~VIIrA 104 (361)
+|++|+++||||||+|||++|++++++. +++||+||||||||+|+++|+++|| .+++ +++++++|++|||||
T Consensus 1 ~I~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~------~~~~v~~~~~ViirA 73 (280)
T TIGR00216 1 DIILAKPRGFCFGVKRAIQMAEEALKES-GKPVYTLGPIVHNPQVVERLRERGVFFFLE------DLDEVAAGDTVIIRA 73 (280)
T ss_pred CEEEccCCCCCccHHHHHHHHHHHHhhc-CCCeEEecCCccCHHHHHHHHHCCCEEeec------CcccCCCCCEEEEeC
Confidence 5899999999999999999999988643 5799999999999999999999997 7776 468888899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhhHhhhcc
Q 018062 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (361)
Q Consensus 105 HGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~-~~ivv~~~~e~~~~~~~ 183 (361)
||+||+++++|+++|+.|||||||||+|+|+.|+++.++||+|||+|+++||||+|+.||++ .++||++++|++.+
T Consensus 74 HGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l--- 150 (280)
T TIGR00216 74 HGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENF--- 150 (280)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhC---
Confidence 99999999999999999999999999999999999999999999999999999999999997 57899999998764
Q ss_pred ccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccc
Q 018062 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263 (361)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTI 263 (361)
+. .+++++++||||+.++|++|+++|++++|. .+++++|||
T Consensus 151 ----------------------------~~---~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~--------~~~~~~nTI 191 (280)
T TIGR00216 151 ----------------------------KV---EDLLGVVSQTTLSQEDTKEIVAELKARVPQ--------KEVPVFNTI 191 (280)
T ss_pred ----------------------------CC---CCcEEEEEcCCCcHHHHHHHHHHHHHhCCC--------cCCCCCCCc
Confidence 11 258999999999999999999999875432 246789999
Q ss_pred cHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEeee
Q 018062 264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTC 340 (361)
Q Consensus 264 C~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~ 340 (361)
|+||++||+|+++|| +++|+||||||+|||||+||++||++.|++|||||+++||+++ ||.+.+++|||+
T Consensus 192 C~AT~~RQ~a~~~la-~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~~------~l~~~~~VGiTA 261 (280)
T TIGR00216 192 CYATQNRQDAVKELA-PEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPEE------WLKGVKVVGITA 261 (280)
T ss_pred ccccHHHHHHHHHHH-hhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCHH------HhCCCCEEEEEe
Confidence 999999999999998 7999999999999999999999999999999999999999998 999999999997
No 5
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=100.00 E-value=3.7e-89 Score=661.99 Aligned_cols=260 Identities=31% Similarity=0.497 Sum_probs=241.4
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 018062 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (361)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrA 104 (361)
|+|++|+++||||||+|||++|++++.++ +++||+||||||||+|+++|+++||.++++ ++++++|++|||||
T Consensus 1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iytlG~iIHN~~vv~~L~~~GV~~v~~------~~~v~~~~~ViirA 73 (298)
T PRK01045 1 MKILLANPRGFCAGVDRAIEIVERALEKY-GAPIYVRHEIVHNRYVVERLEKKGAIFVEE------LDEVPDGAIVIFSA 73 (298)
T ss_pred CEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCeEEEecCccCHHHHHHHHHCCCEEecC------cccCCCCCEEEEeC
Confidence 89999999999999999999999987644 578999999999999999999999999974 67888889999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhhHhhhcc
Q 018062 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (361)
Q Consensus 105 HGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~-~~ivv~~~~e~~~~~~~ 183 (361)
||+||+++++|+++|+.|||||||||+|+|+.|++++++||+|||+|+++||||+|+.||++ +++||++++|++.+.
T Consensus 74 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l~-- 151 (298)
T PRK01045 74 HGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKLE-- 151 (298)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhcc--
Confidence 99999999999999999999999999999999999999999999999999999999999996 578999999987651
Q ss_pred ccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccc--cc
Q 018062 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS--FN 261 (361)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v--~n 261 (361)
....++++++|||||+.++|++|+++|++++ .++++ +|
T Consensus 152 ------------------------------~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~----------~~~~v~~~n 191 (298)
T PRK01045 152 ------------------------------VKDPDKLALVTQTTLSVDDTAEIIAALKERF----------PEIQGPPKD 191 (298)
T ss_pred ------------------------------cCCCCcEEEEEcCCCcHHHHHHHHHHHHHhC----------cCcccCCCC
Confidence 0123689999999999999999999998743 23555 99
Q ss_pred cccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEeee
Q 018062 262 TICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTC 340 (361)
Q Consensus 262 TIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~ 340 (361)
|||+||++||+|+++|| +++|+||||||+|||||+||+++|++.|++|||||+++||++. |+.+...+|||+
T Consensus 192 TIC~aT~~RQ~a~~~La-~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~~~------~l~~~~~VGita 263 (298)
T PRK01045 192 DICYATQNRQEAVKELA-PQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEIDPE------WFKGVKTVGVTA 263 (298)
T ss_pred CcchhhHHHHHHHHHHH-hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCcHH------HhcCCCEEEEEe
Confidence 99999999999999998 7999999999999999999999999999999999999999998 999999999997
No 6
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=100.00 E-value=1.3e-88 Score=648.93 Aligned_cols=263 Identities=32% Similarity=0.523 Sum_probs=245.4
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEc
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP 103 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIr 103 (361)
.|+|+||+|+||||||+|||++|+++++++ ++|||++||||||++|+++|+++|+.|+++ ++++|+|++||||
T Consensus 1 ~~~I~lA~prGFCaGV~RAI~ive~al~~~-g~pIyv~~eIVHN~~Vv~~L~~~g~~fve~------l~e~p~~~~VIfs 73 (294)
T COG0761 1 MMKILLAKPRGFCAGVDRAIQIVERALEEY-GAPIYVRHEIVHNRYVVDRLREKGAIFVEE------LDEVPDGATVIFS 73 (294)
T ss_pred CceEEEecCCccchhHHHHHHHHHHHHHHc-CCCeEEEeccccCHHHHHHHHHcCCEeccc------cccCCCCCEEEEE
Confidence 489999999999999999999999999987 478999999999999999999999999974 6889999999999
Q ss_pred CCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecc-cCC-cEEEEcChhhhHhhh
Q 018062 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS-FAG-KYIIVKNMKEAEYVC 181 (361)
Q Consensus 104 AHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g-~a~-~~ivv~~~~e~~~~~ 181 (361)
||||||++++.|++||++++|||||||+|+|+.|++++++||+||+||+++||||+|+.| |++ .++++++++|++.+.
T Consensus 74 AHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~ 153 (294)
T COG0761 74 AHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLK 153 (294)
T ss_pred CCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999 554 389999999998751
Q ss_pred ccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccc
Q 018062 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFN 261 (361)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~n 261 (361)
.. ..+++++++|||+|.+++.+|+++|+.+||.. ++.++|
T Consensus 154 -----------------------------~~---~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~--------~~~~~~ 193 (294)
T COG0761 154 -----------------------------VQ---LPDKLAFVTQTTLSVDDTAEIVAALKERFPKI--------EVPPFN 193 (294)
T ss_pred -----------------------------cC---CcccEEEEeeeecCHHHHHHHHHHHHHhCccc--------cCCccc
Confidence 11 12489999999999999999999999876553 356899
Q ss_pred cccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEeee
Q 018062 262 TICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTC 340 (361)
Q Consensus 262 TIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~ 340 (361)
||||||++||+|+++|| .+||+||||||+|||||+||+|+|++.|.++|+|++++||++. |+.+.+.+||||
T Consensus 194 ~ICyAT~nRQ~Avk~la-~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~~------w~~~~~~VGvTA 265 (294)
T COG0761 194 DICYATQNRQDAVKELA-PEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDPE------WLKGVKTVGVTA 265 (294)
T ss_pred ccchhhhhHHHHHHHHh-hcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCHH------HhcCccEEEEec
Confidence 99999999999999998 7899999999999999999999999999999999999999999 999999999998
No 7
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=100.00 E-value=3.9e-89 Score=657.51 Aligned_cols=260 Identities=36% Similarity=0.570 Sum_probs=213.9
Q ss_pred EEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCC
Q 018062 27 VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 106 (361)
Q Consensus 27 I~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHG 106 (361)
|++|+++||||||+|||++|++++++++ ++||+||||||||+|+++|+++||.++++ ++++|+|++|||||||
T Consensus 1 I~lA~~~GfC~GV~rAi~~a~~~~~~~~-~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~------~~~~~~g~~ViirAHG 73 (281)
T PF02401_consen 1 IILAKPAGFCFGVKRAIEIAEEALEEYP-GPVYTLGPIIHNPQVVERLEKRGVKVVDD------IDEVPEGDTVIIRAHG 73 (281)
T ss_dssp EEE-TT-SS-HHHHHHHHHHHHHCCCHS-S-EEECS-SSS-HHHHHHHHHCTEEEESS------GCGS-TTEEEEE-TT-
T ss_pred CEecCCCCcCccHHHHHHHHHHHHHhcC-CCEEEecCcccCHHHHHHHHHCCCEEecC------ccccCCCCEEEEeCCC
Confidence 6899999999999999999999998653 59999999999999999999999999985 5888999999999999
Q ss_pred CCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC--cEEEEcChhhhHhhhccc
Q 018062 107 AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG--KYIIVKNMKEAEYVCDYI 184 (361)
Q Consensus 107 v~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~--~~ivv~~~~e~~~~~~~~ 184 (361)
+||+++++|+++|++|||||||||+|+|+.|++++++||+|||+|+++||||+|+.||++ +++++++.+|++.+.
T Consensus 74 v~~~~~~~l~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~~vv~~~~~~~~l~--- 150 (281)
T PF02401_consen 74 VPPEVYEELKERGLEVIDATCPFVKKIHKIVRKYAKEGYQIVIIGDKNHPEVIGILGYAPEEKAIVVESPEDVEKLP--- 150 (281)
T ss_dssp --HHHHHHHHHTTEEEEE---HHHHHHHHHHHHHHHCT-EEEEES-TT-HHHHHHHCCHHTS-EEEESSHHHHHHGG---
T ss_pred CCHHHHHHHHHcCCEEEECCChhHHHHHHHHHHHHhcCCEEEEECCCCCceEEEecccccCCceEEeCChhhhcccC---
Confidence 999999999999999999999999999999999999999999999999999999999997 689999999987651
Q ss_pred cCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCccccccccccccccc
Q 018062 185 LGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC 264 (361)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC 264 (361)
....+|+++|+||||+.++|++|+++|+++++.. ...++||||
T Consensus 151 -----------------------------~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~--------~~~~~nTIC 193 (281)
T PF02401_consen 151 -----------------------------ISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPEL--------EGPVFNTIC 193 (281)
T ss_dssp -----------------------------GSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCE--------E-SCC-S--
T ss_pred -----------------------------CCCCCeEEEEEeecccHHHHHHHHHHHHHhCccc--------cCCCCCCCC
Confidence 1123699999999999999999999998854332 124899999
Q ss_pred HHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEeee
Q 018062 265 DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTC 340 (361)
Q Consensus 265 ~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~ 340 (361)
+||++||+|+++|| ++||+||||||+|||||+||+|+|++.|+++||||+++||++. |+.+.+.+|||+
T Consensus 194 ~aT~~RQ~a~~~La-~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el~~~------~l~~~~~VGIta 262 (281)
T PF02401_consen 194 YATQNRQEAARELA-KEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADELDPE------WLKGVKKVGITA 262 (281)
T ss_dssp CHHHHHHHHHHHHH-CCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG--HH------HHTT-SEEEEEE
T ss_pred HhHHHHHHHHHHHH-hhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccccCHh------HhCCCCEEEEEc
Confidence 99999999999998 7999999999999999999999999999999999999999998 999999999998
No 8
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=4.3e-82 Score=666.52 Aligned_cols=258 Identities=32% Similarity=0.517 Sum_probs=242.1
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 018062 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (361)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrA 104 (361)
|+|++|+++||||||+|||++|++++.++ +++||+||||||||+|+++|+++||.++++ ++++++|++|||||
T Consensus 1 m~i~~a~~~GfC~GV~rAi~~~~~~~~~~-~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~------~~~~~~~~~vii~a 73 (647)
T PRK00087 1 MEIILAKKAGFCFGVKRAVDTAIKTAEEL-KGKIYTLGPLIHNNQVVEKLKKKGIKPIED------IDELNEGDTIIIRS 73 (647)
T ss_pred CEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCcCCHHHHHHHHHCCCEEeCC------HhhCCCCCEEEEeC
Confidence 89999999999999999999999987654 579999999999999999999999999974 68888899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhhhHhhhcc
Q 018062 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (361)
Q Consensus 105 HGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~-~~ivv~~~~e~~~~~~~ 183 (361)
||+||+++++|+++|+.|||||||+|+|+|+.|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+
T Consensus 74 HG~~~~~~~~~~~~~~~viDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~g~~~~~~~vv~~~~~~~~~--- 150 (647)
T PRK00087 74 HGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAEKL--- 150 (647)
T ss_pred CCCCHHHHHHHHHCCCeEEECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccccCCCEEEECCHHHHhhC---
Confidence 99999999999999999999999999999999999999999999999999999999999997 57999999998764
Q ss_pred ccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccc
Q 018062 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263 (361)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTI 263 (361)
+ ..+++++++||||+.++|++|+++|++++ .+++++|||
T Consensus 151 -----------------------------~--~~~~~~~~~QTT~~~~~~~~~~~~l~~~~----------~~~~~~~ti 189 (647)
T PRK00087 151 -----------------------------P--FDKKICVVSQTTEKQENFEKVLKELKKKG----------KEVKVFNTI 189 (647)
T ss_pred -----------------------------C--CCCCEEEEEcCCCcHHHHHHHHHHHHHhC----------CCcccCCCc
Confidence 1 12589999999999999999999998733 357789999
Q ss_pred cHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEeee
Q 018062 264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTC 340 (361)
Q Consensus 264 C~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~ 340 (361)
|+||++||+|+++|| ++||+||||||+|||||+||+++|++.|++|||||+++||+++ |+.+...+||||
T Consensus 190 C~at~~Rq~a~~~la-~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~~------~~~~~~~vgita 259 (647)
T PRK00087 190 CNATEVRQEAAEKLA-KKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPEE------WFKGVKIIGVTA 259 (647)
T ss_pred chhhhhHHHHHHHHH-hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCHH------HhCCCCEEEEEe
Confidence 999999999999998 7999999999999999999999999999999999999999998 999999999998
No 9
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=96.81 E-value=0.014 Score=57.24 Aligned_cols=173 Identities=18% Similarity=0.155 Sum_probs=114.7
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHH--H-cCcEEecCCccccccccccCCCEEEEcCCCCCH--
Q 018062 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLE--E-MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV-- 109 (361)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~--~-~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~-- 109 (361)
=|.=|+++-+.+.+..++ +-.|.+.|+-=| |+|..-+. . ....++++.++.+.+..-......++.=--.+.
T Consensus 93 TCP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~~vv~~~~~~~~l~~~~~~kv~vvsQTT~~~~~ 169 (281)
T PF02401_consen 93 TCPFVKKIHKIVRKYAKE--GYQIVIIGDKNH-PEVIGILGYAPEEKAIVVESPEDVEKLPISDPKKVAVVSQTTQSVEK 169 (281)
T ss_dssp --HHHHHHHHHHHHHHHC--T-EEEEES-TT--HHHHHHHCCHHTS-EEEESSHHHHHHGGGSSTTCEEEEE-TTS-HHH
T ss_pred CChhHHHHHHHHHHHHhc--CCEEEEECCCCC-ceEEEecccccCCceEEeCChhhhcccCCCCCCeEEEEEeecccHHH
Confidence 377888888888887775 457999999666 55555442 2 345666654322222211123456777666776
Q ss_pred --HHHHHHHhcCCcEE----eCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhhHh
Q 018062 110 --EEMVTLNNKNVQIV----DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY 179 (361)
Q Consensus 110 --~v~~~l~~kgl~Vi----DATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a----~~~ivv~~~~e~~~ 179 (361)
++.+.|+++.-.+. |+-|+--..=|..+++++++-.-++++|.++-.-+.-+...| .+++.|++.+|+..
T Consensus 170 ~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el~~ 249 (281)
T PF02401_consen 170 FEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADELDP 249 (281)
T ss_dssp HHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG--H
T ss_pred HHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccccCH
Confidence 56777888887776 999999999999999999999999999999999988887554 46899999999853
Q ss_pred hhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 018062 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (361)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~ 242 (361)
- .| + ..+++|+.+=+.=+.+..++++++|++
T Consensus 250 ~---------------------~l--------~---~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 250 E---------------------WL--------K---GVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp H---------------------HH--------T---T-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred h---------------------Hh--------C---CCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 1 11 1 125999999999999999999998875
No 10
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=95.34 E-value=0.18 Score=50.07 Aligned_cols=170 Identities=14% Similarity=0.175 Sum_probs=118.3
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc--CcEEecCCccccccccc--cC-CCEEEEcCCCCCH
Q 018062 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVV--NK-GDVVVLPAFGAAV 109 (361)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~--GV~~v~~~~~~~~l~el--~~-g~~VIIrAHGv~~ 109 (361)
=|.=|+++-+.+++..++ +-.|.++|+==| |+|..-+.-- ...++++.+ +++.+ +. ....++.=---+.
T Consensus 95 TCP~V~k~~~~v~~~~~~--Gy~vvi~G~~~H-pEv~gi~g~~~~~~~vv~~~~---e~~~l~~~~~~~v~vvsQTT~~~ 168 (298)
T PRK01045 95 TCPLVTKVHKEVARMSRE--GYEIILIGHKGH-PEVEGTMGQAPGGVYLVESPE---DVAKLEVKDPDKLALVTQTTLSV 168 (298)
T ss_pred CCccchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEEcCHH---HHhhcccCCCCcEEEEEcCCCcH
Confidence 377777777777776664 346888887655 3343332211 133444432 23333 22 2344555555555
Q ss_pred H----HHHHHHhcC--CcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhh
Q 018062 110 E----EMVTLNNKN--VQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEA 177 (361)
Q Consensus 110 ~----v~~~l~~kg--l~V--iDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a----~~~ivv~~~~e~ 177 (361)
+ +.+.|+++. +.+ .|+-|.-...=|+.+++++++-.-++++|.++-.-+.=+...| .+++.|++.+|+
T Consensus 169 ~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el 248 (298)
T PRK01045 169 DDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEI 248 (298)
T ss_pred HHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHC
Confidence 4 455666655 777 9999999999999999999999999999999999988776544 468999999997
Q ss_pred HhhhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 018062 178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (361)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~ 242 (361)
+. + . | + ..++||+.+=+.=+.+..++++.+|+.
T Consensus 249 ~~-----------------~-~---l--------~---~~~~VGitaGASTP~~li~eV~~~l~~ 281 (298)
T PRK01045 249 DP-----------------E-W---F--------K---GVKTVGVTAGASAPEWLVQEVIARLKE 281 (298)
T ss_pred cH-----------------H-H---h--------c---CCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 52 1 1 1 1 226899999999999999999999976
No 11
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=93.97 E-value=0.48 Score=46.66 Aligned_cols=169 Identities=15% Similarity=0.106 Sum_probs=114.1
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHH--cCcEEecCCccccccccccC-CCEEEEcCCCCCHH--
Q 018062 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE-- 110 (361)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~--~GV~~v~~~~~~~~l~el~~-g~~VIIrAHGv~~~-- 110 (361)
|.=|+++-+.+.+..++ +-.|.+.|+==| |+|..-+.. ....++++.+ +++.++. ....++.=--.+.+
T Consensus 96 CP~V~kv~~~v~~~~~~--Gy~iiiiG~~~H-pEv~gi~g~~~~~~~vv~~~~---d~~~l~~~~~v~vvsQTT~~~~~~ 169 (280)
T TIGR00216 96 CPLVTKVHNAVKKYAKE--GYHVILIGKKNH-PEVIGTRGYAPDKAIVVETLE---DLENFKVEDLLGVVSQTTLSQEDT 169 (280)
T ss_pred CcccHHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEECCHH---HHHhCCCCCcEEEEEcCCCcHHHH
Confidence 66666766666666654 345777777555 333332221 1233444332 2333332 22344544444444
Q ss_pred --HHHHHHhcC----CcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhhHhh
Q 018062 111 --EMVTLNNKN----VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYV 180 (361)
Q Consensus 111 --v~~~l~~kg----l~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a----~~~ivv~~~~e~~~~ 180 (361)
+.+.|+++. ..+.|+-|.-...=|+.+++++++=.-++++|.++-.-+.=+...| .+++.|++.+|+..
T Consensus 170 ~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~- 248 (280)
T TIGR00216 170 KEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPE- 248 (280)
T ss_pred HHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCH-
Confidence 455577766 7789999999999999999999999999999999999988776544 36899999999752
Q ss_pred hccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 018062 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (361)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~ 242 (361)
+. | + ..++||+.+=+.=+.+..++++++|++
T Consensus 249 ----------------~~----l--------~---~~~~VGiTAGASTP~~li~eVi~~l~~ 279 (280)
T TIGR00216 249 ----------------EW----L--------K---GVKVVGITAGASTPDWIIEEVIRKIKE 279 (280)
T ss_pred ----------------HH----h--------C---CCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 11 1 1 125899999999999999999888753
No 12
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=93.06 E-value=0.82 Score=45.07 Aligned_cols=170 Identities=17% Similarity=0.136 Sum_probs=113.1
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc--CcEEecCCccccccccccC-CCEEEEcCCCCCHHH
Q 018062 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVEE 111 (361)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~--GV~~v~~~~~~~~l~el~~-g~~VIIrAHGv~~~v 111 (361)
=|.=|+++-..+.+..++ +-.|...|+==| |+|..-+..- ...++++.+ +++.++. ....++.=---+.+.
T Consensus 98 TCP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~vv~~~~---d~~~l~~~~kv~~vsQTT~~~~~ 171 (281)
T PRK12360 98 TCPFVKKIQNIVEEYYNK--GYSIIIVGDKNH-PEVIGINGWCDNSAYIVNSIE---EVENIPFLDKACVVAQTTIIPEL 171 (281)
T ss_pred CCccchHHHHHHHHHHhC--CCEEEEEcCCCC-ceeeEeccCcCCCeEEECCHH---HHhhCccccCEEEEECCCCcHHH
Confidence 366677777777666664 345777777544 3333322111 133444332 2233322 233455444455444
Q ss_pred ----HHHHHhc--CCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhhHhhh
Q 018062 112 ----MVTLNNK--NVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVC 181 (361)
Q Consensus 112 ----~~~l~~k--gl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a----~~~ivv~~~~e~~~~~ 181 (361)
.+.|+++ .+.+.|+-|.-...=|..+++++++=..++++|.++-.-+.=+...| ++++.|++.+|+..
T Consensus 172 ~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~-- 249 (281)
T PRK12360 172 WEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDL-- 249 (281)
T ss_pred HHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCH--
Confidence 3444444 55669999999999999999999999999999999999888776444 46899999998742
Q ss_pred ccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 018062 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (361)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~ 242 (361)
+ + | + ..++||+.+=+.=+.+..++++++|++
T Consensus 250 ---------------~-~---~--------~---~~~~VGitaGASTP~~li~eV~~~l~~ 280 (281)
T PRK12360 250 ---------------E-M---L--------K---DYKIIGITAGASTPDWIIEEVIKKIKN 280 (281)
T ss_pred ---------------H-H---h--------C---CCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 1 1 1 1 126899999999999999999888864
No 13
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=90.82 E-value=2.5 Score=43.62 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=77.5
Q ss_pred CCcEEeCcChhhHHHHHHHHHHhh-CCCeEEEEecCCCceeeeecccC----CcEEEEcChhhhHhhhccccCCCCCCCC
Q 018062 119 NVQIVDTTCPWVSKVWTSVEKHKK-GDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSS 193 (361)
Q Consensus 119 gl~ViDATCP~V~kv~~~v~~~~~-~Gy~IIIiG~~~HpEV~gi~g~a----~~~ivv~~~~e~~~~~~~~~~~~~~~~~ 193 (361)
.+.+.|+-|.-...=|+.++++++ +-.-+|++|.++-.-+.=+.-.| .+++.|++.+|+..- +.|++.-+....
T Consensus 263 ~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~~~-~~i~h~~~~~~~ 341 (387)
T PRK13371 263 HFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERILSG-NSIEHKPLGKEL 341 (387)
T ss_pred cccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcCCc-cccccccccchh
Confidence 678899999999999999999986 68899999999988777665433 468999999998531 111111000000
Q ss_pred CcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHH
Q 018062 194 STKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKT 243 (361)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~ 243 (361)
.--+.+ |+. ...+||+.+=+.=+.+..++++++|+..
T Consensus 342 ~~t~~w-----------l~~--~~~~VGITAGASTP~~lI~eVi~~l~~l 378 (387)
T PRK13371 342 VVTENW-----------LPE--GPVTVGITSGASTPDKVVEDVIEKIFAL 378 (387)
T ss_pred hhhhhh-----------hcc--CCCEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 000011 110 1258999999999999999999999764
No 14
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=89.23 E-value=3.9 Score=36.39 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=57.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
+++++.+++ ...-+..+.+-+++.... . +-++.+.++-... ...++.++++.+..+|++|+.+...++- .
T Consensus 1 ~ig~v~~~~-~~~~~~~~~~g~~~~~~~-~-----g~~l~~~~~~~~~-~~~~~~~~~~~~~~~d~ii~~~~~~~~~-~- 70 (264)
T cd01537 1 TIGVLVPDL-DNPFFAQVLKGIEEAAKA-A-----GYQVLLANSQNDA-EKQLSALENLIARGVDGIIIAPSDLTAP-T- 70 (264)
T ss_pred CeEEEEcCC-CChHHHHHHHHHHHHHHH-c-----CCeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEecCCCcch-h-
Confidence 467888776 445567777777664333 2 2245555555443 3345566666656899999877665543 3
Q ss_pred HHHHHHhcCCCeEEeCCCCC
Q 018062 299 LQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~e 318 (361)
+++.+.+.+.|...+.+..+
T Consensus 71 ~~~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 71 IVKLARKAGIPVVLVDRDIP 90 (264)
T ss_pred HHHHhhhcCCCEEEeccCCC
Confidence 67888888899988866543
No 15
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=88.37 E-value=5.4 Score=37.74 Aligned_cols=150 Identities=19% Similarity=0.221 Sum_probs=88.0
Q ss_pred cchhHHHHHHHcCCccc-ccc--------eEEEEeCCCCCcccH---HHHHHHHHHHHhhCC-----CCceEEecccccC
Q 018062 5 YTSDIIKKLKENGFEYT-WGN--------VKVKLAESYGFCWGV---ERAVQIAYEARKQFP-----EEKIWITNEIIHN 67 (361)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~--------mkI~lA~~~GFC~GV---~RAI~~a~~~~~~~~-----~~~Vy~lG~iIHN 67 (361)
..++....|+..|+... +-. ++..+..-.+|+|=| .+|++...+.+.... ..++++.|+
T Consensus 12 ~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~---- 87 (248)
T COG1587 12 QAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGE---- 87 (248)
T ss_pred hhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhhcccccccCeEEEEcH----
Confidence 45677788888886322 211 222222222333311 455555555444322 368999995
Q ss_pred HHHHHHHHHcCcEEecCCccc---ccccccc---C-C-CEEEEcCCCCCHHHHHHHHhcCCcEE-----eCcChhhHHHH
Q 018062 68 PTVNKRLEEMAVQNIPVEEGK---KQFDVVN---K-G-DVVVLPAFGAAVEEMVTLNNKNVQIV-----DTTCPWVSKVW 134 (361)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~---~~l~el~---~-g-~~VIIrAHGv~~~v~~~l~~kgl~Vi-----DATCP~V~kv~ 134 (361)
.--+.|++.|++..--+++. ..++.++ . | .++++|++|..+...+.|.++|..+. ++.+|... .+
T Consensus 88 -~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~-~~ 165 (248)
T COG1587 88 -KTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLD-EA 165 (248)
T ss_pred -HHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCcc-HH
Confidence 67799999998755432211 1122222 2 2 45688999999999999999999984 44444444 44
Q ss_pred HHHHHHhhCCCeEEEEecCCCceeeeecccCCcEEEEcChhhhHhhh
Q 018062 135 TSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVC 181 (361)
Q Consensus 135 ~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~~~ivv~~~~e~~~~~ 181 (361)
.....+..++. +++++.|...++.+.
T Consensus 166 ~~~~~~~~~~~---------------------d~v~ftS~~~v~~~~ 191 (248)
T COG1587 166 TLIELLKLGEV---------------------DAVVFTSSSAVRALL 191 (248)
T ss_pred HHHHHHHhCCC---------------------CEEEEeCHHHHHHHH
Confidence 44555555543 456677777776654
No 16
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=87.51 E-value=4.3 Score=44.14 Aligned_cols=170 Identities=18% Similarity=0.142 Sum_probs=117.7
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc--CcEEecCCccccccccccC-CCEEEEcCCCCCHH-
Q 018062 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE- 110 (361)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~--GV~~v~~~~~~~~l~el~~-g~~VIIrAHGv~~~- 110 (361)
=|.=|+++=+.|.+..++ +-.|...|+==| |+|..-+..- ...++++.+ +++.++. ....++.=--.+.+
T Consensus 95 TCP~V~k~~~~~~~~~~~--g~~ivi~G~~~H-pEv~g~~g~~~~~~~vv~~~~---~~~~~~~~~~~~~~~QTT~~~~~ 168 (647)
T PRK00087 95 TCPFVKNIQKLAKKYYEE--GYQIVIVGDKNH-PEVIGINGWCNNSAIIVEDGE---EAEKLPFDKKICVVSQTTEKQEN 168 (647)
T ss_pred CCcCchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccccCCCEEEECCHH---HHhhCCCCCCEEEEEcCCCcHHH
Confidence 477788888888777765 456888887665 3343332211 134444332 2333332 23445554555554
Q ss_pred ---HHHHHHhc--CCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhhHhhh
Q 018062 111 ---EMVTLNNK--NVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVC 181 (361)
Q Consensus 111 ---v~~~l~~k--gl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a----~~~ivv~~~~e~~~~~ 181 (361)
+.+.|+++ .+.+.|+-|.-...=|+.+++++++=..++++|.++-+-+.=+...| ++++.|++++|+..
T Consensus 169 ~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~-- 246 (647)
T PRK00087 169 FEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPE-- 246 (647)
T ss_pred HHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCH--
Confidence 45556654 56669999999999999999999999999999999999988776544 46899999999753
Q ss_pred ccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 018062 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (361)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~ 242 (361)
+ .| + ..+.||+.+=+.=+.+..++++++|++
T Consensus 247 ---------------~----~~--------~---~~~~vgitagaStP~~~i~~v~~~l~~ 277 (647)
T PRK00087 247 ---------------E----WF--------K---GVKIIGVTAGASTPDWIIEEVIKKMSE 277 (647)
T ss_pred ---------------H----Hh--------C---CCCEEEEEeccCCCHHHHHHHHHHHHH
Confidence 1 11 1 125899999999999999999999876
No 17
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=85.73 E-value=16 Score=38.54 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=87.1
Q ss_pred cCCcEEeCcChhhHHHHHHHHHHh-hCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhhHhhhccccCCCCCCC
Q 018062 118 KNVQIVDTTCPWVSKVWTSVEKHK-KGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGS 192 (361)
Q Consensus 118 kgl~ViDATCP~V~kv~~~v~~~~-~~Gy~IIIiG~~~HpEV~gi~g~a----~~~ivv~~~~e~~~~~~~~~~~~~~~~ 192 (361)
..+.+.|+-|.-...=|+.+.+++ ++-.-+|+||.+|-.-+.=+...| ..++.|++.+|+..- +.|.+..+.|+
T Consensus 336 ~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI~~~-~~i~h~~~~~e 414 (460)
T PLN02821 336 DHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERIGPG-NTIAHKLNHGE 414 (460)
T ss_pred ccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHcCcc-cccccccccch
Confidence 457788999999999999999996 688999999999887776665444 357899999998642 56667767776
Q ss_pred CCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 018062 193 SSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (361)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~ 242 (361)
....+++++ . ...+||+.+=+.=+..-.++++++|.+
T Consensus 415 ~~~~~~wl~------------~-~~~~VGITAGASTPd~lIeeVi~~l~~ 451 (460)
T PLN02821 415 LVEKENWLP------------E-GPVTIGVTSGASTPDKVVEDVLDKVFD 451 (460)
T ss_pred hhhhHHHhc------------c-CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 666666652 1 125899999999999999999988876
No 18
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=83.77 E-value=17 Score=33.11 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=83.2
Q ss_pred hhHHHHHHHcCCccccc-ceEEEE-----------e-----CCCCCcccHHHHHHHHHHHHh-------hCCCCceEEec
Q 018062 7 SDIIKKLKENGFEYTWG-NVKVKL-----------A-----ESYGFCWGVERAVQIAYEARK-------QFPEEKIWITN 62 (361)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~mkI~l-----------A-----~~~GFC~GV~RAI~~a~~~~~-------~~~~~~Vy~lG 62 (361)
|++.++|++.|+...+= .+++.- . ...+..|==.+|++...+.++ ...+.++|+.|
T Consensus 1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG 80 (231)
T PF02602_consen 1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG 80 (231)
T ss_dssp -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence 46677888888555443 233332 0 334444444455555433332 11135799998
Q ss_pred ccccCHHHHHHHHHcCcEE--ecC-Cccccc----cc-cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcC---hhhH
Q 018062 63 EIIHNPTVNKRLEEMAVQN--IPV-EEGKKQ----FD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC---PWVS 131 (361)
Q Consensus 63 ~iIHN~~Vv~~L~~~GV~~--v~~-~~~~~~----l~-el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATC---P~V~ 131 (361)
+ ..-+.|++.|+.. +.. ....+. +. .+..+..+++|+.+..+...+.|++.|..|.-..| |-..
T Consensus 81 ~-----~Ta~~l~~~G~~~~~~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~ 155 (231)
T PF02602_consen 81 P-----KTAEALREYGFQPDFVPSSEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEE 155 (231)
T ss_dssp H-----HHHHHHHHTT-EECEE-TTSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHH
T ss_pred H-----HHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeeccccc
Confidence 5 5668999999997 443 111111 22 22333467899999999999999999988733222 3333
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCceeeeecccCCcEEEEcChhhhHhh
Q 018062 132 KVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (361)
Q Consensus 132 kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~~~ivv~~~~e~~~~ 180 (361)
........+...++ +++++.|+.-++.+
T Consensus 156 ~~~~~~~~l~~~~~---------------------~~v~ftS~~~~~~~ 183 (231)
T PF02602_consen 156 LSPELKEALDRGEI---------------------DAVVFTSPSAVRAF 183 (231)
T ss_dssp HHHHHHHHHHHTTT---------------------SEEEESSHHHHHHH
T ss_pred chHHHHHHHHcCCC---------------------CEEEECCHHHHHHH
Confidence 33444444444443 46667777776654
No 19
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=81.18 E-value=12 Score=34.09 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=56.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++.-++-+. -|..+.+-+++..... + -++.+. .-+..+.++| +.++.+.+..+|++|| ....++.+..
T Consensus 1 I~vi~~~~~~~-~~~~~~~g~~~~a~~~-g-----~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv-~~~~~~~~~~ 71 (257)
T PF13407_consen 1 IGVIVPSMDNP-FWQQVIKGAKAAAKEL-G-----YEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIV-SPVDPDSLAP 71 (257)
T ss_dssp EEEEESSSSSH-HHHHHHHHHHHHHHHH-T-----CEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEE-ESSSTTTTHH
T ss_pred cEEEeCCCCCH-HHHHHHHHHHHHHHHc-C-----CEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEe-cCCCHHHHHH
Confidence 35555555555 6777777777654332 2 123332 2345555666 5555555678999884 5555566678
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
+++-|++.|.|.+.+.+.
T Consensus 72 ~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 72 FLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHTTSEEEEESST
T ss_pred HHHHHhhcCceEEEEecc
Confidence 888899999999999888
No 20
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=80.74 E-value=18 Score=35.72 Aligned_cols=108 Identities=7% Similarity=0.000 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCE--EEEcCCCCCHHHHHHHH-
Q 018062 40 ERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDV--VVLPAFGAAVEEMVTLN- 116 (361)
Q Consensus 40 ~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~--VIIrAHGv~~~v~~~l~- 116 (361)
|.-..++.++++. +..++.+ =+||.-++.|...|.....+.+ +.+..+++..+ |+++|--+++++.+.|.
T Consensus 10 rMG~n~v~rl~~~--ghdvV~y---D~n~~av~~~~~~ga~~a~sl~--el~~~L~~pr~vWlMvPag~it~~vi~~la~ 82 (300)
T COG1023 10 RMGANLVRRLLDG--GHDVVGY---DVNQTAVEELKDEGATGAASLD--ELVAKLSAPRIVWLMVPAGDITDAVIDDLAP 82 (300)
T ss_pred hhhHHHHHHHHhC--CCeEEEE---cCCHHHHHHHHhcCCccccCHH--HHHHhcCCCcEEEEEccCCCchHHHHHHHHh
Confidence 3445778888874 3456666 4899999999999977665421 23445555444 44554449999988776
Q ss_pred --hcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 018062 117 --NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (361)
Q Consensus 117 --~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~ 154 (361)
+.|-.|||.-=.+-+-.+++.+.+.++|.+.+=+|-++
T Consensus 83 ~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 83 LLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred hcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 47999999999999999999999999999999888655
No 21
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=79.51 E-value=8.7 Score=37.07 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=55.7
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhC-CCeEEEEecCCCceeeeecccCCcEEEEcChh
Q 018062 98 DVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATASFAGKYIIVKNMK 175 (361)
Q Consensus 98 ~~VIIrAHGv~~~v~~~l~~kgl~V-iDATCP~V~kv~~~v~~~~~~-Gy~IIIiG~~~HpEV~gi~g~a~~~ivv~~~~ 175 (361)
..|.+-..|-..+..+.++++|+.. ||||=||-..+++.+.+.+++ |-..+=+-.+.= .-.. ..+.+.+.|.+
T Consensus 45 ~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~---~~~~--~~~~~~v~~~~ 119 (249)
T PF02571_consen 45 LEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSW---QPEP--DDNWHYVDSYE 119 (249)
T ss_pred ceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCc---ccCC--CCeEEEeCCHH
Confidence 3577778877788889999999986 999999999999999998875 544444443321 1000 12367778888
Q ss_pred hhHhh
Q 018062 176 EAEYV 180 (361)
Q Consensus 176 e~~~~ 180 (361)
|+...
T Consensus 120 eA~~~ 124 (249)
T PF02571_consen 120 EAAEL 124 (249)
T ss_pred HHHHH
Confidence 87654
No 22
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=78.10 E-value=13 Score=32.87 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHh---
Q 018062 41 RAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN--- 117 (361)
Q Consensus 41 RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~--- 117 (361)
..-.+|..+++. +-+|+.+. .++.-.++|.+.|+...++ +.++-++.-|||.+---++++.+.+..
T Consensus 12 mG~~~a~~L~~~--g~~v~~~d---~~~~~~~~~~~~g~~~~~s------~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 12 MGSAMARNLAKA--GYEVTVYD---RSPEKAEALAEAGAEVADS------PAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp HHHHHHHHHHHT--TTEEEEEE---SSHHHHHHHHHTTEEEESS------HHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHhc--CCeEEeec---cchhhhhhhHHhhhhhhhh------hhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 445577777764 34687765 6789999999999998875 344444434677776666666665553
Q ss_pred -----cCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 018062 118 -----KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (361)
Q Consensus 118 -----kgl~ViDATCP~V~kv~~~v~~~~~~Gy~II 148 (361)
.|..+||.|=-.....++..+++.+.|...+
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 7889999999999999999999999995544
No 23
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=78.05 E-value=11 Score=36.52 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCcEEecCC-ccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhC-C
Q 018062 68 PTVNKRLEEMAVQNIPVE-EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG-D 144 (361)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~-~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~V-iDATCP~V~kv~~~v~~~~~~-G 144 (361)
+++.+.|.++|..++-.. .+...... .+..|..-..|-..+..+.+++.++.. ||||=||-..+.+.+.+.+++ |
T Consensus 15 r~la~~L~~~g~~v~~Svat~~g~~~~--~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ 92 (248)
T PRK08057 15 RALARALAAAGVDIVLSLAGRTGGPAD--LPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALG 92 (248)
T ss_pred HHHHHHHHhCCCeEEEEEccCCCCccc--CCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhC
Confidence 455566666666544321 11101111 133455555555577888888888875 999999999999999998775 5
Q ss_pred CeEEEEecCCCceeeeecccCCcEEEEcChhhhHhh
Q 018062 145 YTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (361)
Q Consensus 145 y~IIIiG~~~HpEV~gi~g~a~~~ivv~~~~e~~~~ 180 (361)
-..+=+-.+ +.. ..-.+..+.+.+.+|+...
T Consensus 93 ipyiR~eR~---~~~--~~~~~~~~~v~s~~~a~~~ 123 (248)
T PRK08057 93 IPYLRLERP---SWL--PQPGDRWIEVDDIEEAAEA 123 (248)
T ss_pred CcEEEEeCC---CcC--CCCCCCEEEECCHHHHHHH
Confidence 555555432 210 0001245777888887654
No 24
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=76.88 E-value=22 Score=31.01 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=54.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL 299 (361)
|+++.-.+.....+..+.+.++....+. + .+-++.++++-|.+.. -.+.+++++...+|+++..+.. .+...+
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~ii~~~~~--~~~~~~ 74 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEI-G---RGLEVILADSQSDPER-ALEALRDLIQQGVDGIIGPPSS--SSALAV 74 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHh-C---CceEEEEecCCCCHHH-HHHHHHHHHHcCCCEEEecCCC--HHHHHH
Confidence 3444433213445666666665543331 0 1235667788777633 3345555655578988776554 344448
Q ss_pred HHHHHhcCCCeEEeCCCCC
Q 018062 300 QEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 300 ~eia~~~~~~t~~Ie~~~e 318 (361)
.+.+.+.+.|...+....+
T Consensus 75 ~~~~~~~~ip~v~~~~~~~ 93 (269)
T cd01391 75 VELAAAAGIPVVSLDATAP 93 (269)
T ss_pred HHHHHHcCCcEEEecCCCC
Confidence 8888899999988877654
No 25
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=76.86 E-value=25 Score=35.01 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=51.8
Q ss_pred cccHHHHHHHHHHHHhhCCC--CceEEecccccCHHHHHHHHHcCcEEecCCccccccccccC-C-CEEEEcCCCCCHHH
Q 018062 36 CWGVERAVQIAYEARKQFPE--EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-G-DVVVLPAFGAAVEE 111 (361)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~--~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~-g-~~VIIrAHGv~~~v 111 (361)
++.+.-+.+.+.+++.+.+. .++-+.-.-==+|..++.+.+.--.. ++..+. + ..|+|+|||+|...
T Consensus 132 ~~t~gs~~~~~~~~l~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~---------l~~~~~~~~~~llfSaHglP~~~ 202 (322)
T TIGR00109 132 SSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADSIKET---------LASFPEPDNAVLLFSAHGLPQSY 202 (322)
T ss_pred cccHHHHHHHHHHHHHhcccCCCeEEEeCccccCcHHHHHHHHHHHHH---------HHhcCCcCCcEEEEeCCCCchhH
Confidence 45566666666666655322 13333333334666666665542211 222221 2 27999999999887
Q ss_pred HHHHHhcCCcEEeCcChhhHHHHHHHHHHhhC
Q 018062 112 MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (361)
Q Consensus 112 ~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~ 143 (361)
.++ | .|+...++..++.+.+.
T Consensus 203 ~~~----G-------d~Y~~~~~~ta~~l~~~ 223 (322)
T TIGR00109 203 VDE----G-------DPYPAECEATTRLIAEK 223 (322)
T ss_pred hhC----C-------CChHHHHHHHHHHHHHH
Confidence 654 3 47888888888877654
No 26
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=75.88 E-value=3.1 Score=32.99 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=25.6
Q ss_pred EcCCCCCHHH----HHHHHhcCCcEEeCcChhhHHHHH
Q 018062 102 LPAFGAAVEE----MVTLNNKNVQIVDTTCPWVSKVWT 135 (361)
Q Consensus 102 IrAHGv~~~v----~~~l~~kgl~ViDATCP~V~kv~~ 135 (361)
+|-+|+.... .+.+++.|++|+ ++||||.+--+
T Consensus 34 ~rGqGia~~L~~~~l~~a~~~~~kv~-p~C~y~~~~~~ 70 (78)
T PF14542_consen 34 LRGQGIAKKLVEAALDYARENGLKVV-PTCSYVAKYFR 70 (78)
T ss_dssp SSTTTHHHHHHHHHHHHHHHTT-EEE-ETSHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCEEE-EECHHHHHHHH
Confidence 5677887654 677899999999 99999987653
No 27
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=75.37 E-value=3.8 Score=33.55 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=39.4
Q ss_pred HHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 275 YKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 275 ~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
+.|-.+++-++++-++-..-.+.+|-++|++.+.|-.+|+|-.||-
T Consensus 23 Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LG 68 (84)
T PRK13600 23 KALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALG 68 (84)
T ss_pred HHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 3343357889999999999999999999999999999999988874
No 28
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=74.51 E-value=26 Score=32.16 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=50.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++. ..++-.-|..+.+.+++...+. + -++.+..+-.......| +.++.|....+|.+|+.+ ..|++...
T Consensus 2 igvi~-~~~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~-~~~~~~~~ 73 (275)
T cd06320 2 YGVVL-KTLSNEFWRSLKEGYENEAKKL-G-----VSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSP-ISDVNLVP 73 (275)
T ss_pred eeEEE-ecCCCHHHHHHHHHHHHHHHHh-C-----CeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECC-CChHHhHH
Confidence 44444 2345556777777776643322 1 12333222223344444 556666556799998754 44444445
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
..+.+++.+.|...+.+.
T Consensus 74 ~~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 74 AVERAKKKGIPVVNVNDK 91 (275)
T ss_pred HHHHHHHCCCeEEEECCC
Confidence 556677888999888764
No 29
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=73.68 E-value=18 Score=39.12 Aligned_cols=107 Identities=15% Similarity=0.213 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHHHHhhCCCCceEEeccc-----ccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHH
Q 018062 37 WGVERAVQIAYEARKQFPEEKIWITNEI-----IHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEE 111 (361)
Q Consensus 37 ~GV~RAI~~a~~~~~~~~~~~Vy~lG~i-----IHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v 111 (361)
.+.++|++...+++++ +++|.++|+- -=---..+-|++.|...+.- -+|. + +---||++++.
T Consensus 53 ~~m~~a~~ri~~ai~~--~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~--------~IP~--R-~~eGYGl~~~~ 119 (575)
T PRK11070 53 SGIEKAVELLYNALRE--GTRIIVVGDFDADGATSTALSVLALRSLGCSNVDY--------LVPN--R-FEDGYGLSPEV 119 (575)
T ss_pred hCHHHHHHHHHHHHHC--CCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEE--------EeCC--C-CcCCCCCCHHH
Confidence 5999999999999986 4689999873 11123456777777732210 0111 0 12248999999
Q ss_pred HHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCce
Q 018062 112 MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (361)
Q Consensus 112 ~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpE 157 (361)
.+.+.+.|..++ =||=--...+..++.+.+.|-.|||.-++..|+
T Consensus 120 i~~~~~~~~~Li-ItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~~~ 164 (575)
T PRK11070 120 VDQAHARGAQLI-VTVDNGISSHAGVAHAHALGIPVLVTDHHLPGE 164 (575)
T ss_pred HHHHHhcCCCEE-EEEcCCcCCHHHHHHHHHCCCCEEEECCCCCCC
Confidence 999999887664 455555678888888888999999998876544
No 30
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=73.19 E-value=37 Score=32.10 Aligned_cols=122 Identities=10% Similarity=0.103 Sum_probs=73.0
Q ss_pred cccchhHHHHHHHcCCccccc-ceEEEEeC-----------CCCCcccH---HHHHHHHHHHHhhCC----CCceEEecc
Q 018062 3 QEYTSDIIKKLKENGFEYTWG-NVKVKLAE-----------SYGFCWGV---ERAVQIAYEARKQFP----EEKIWITNE 63 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~mkI~lA~-----------~~GFC~GV---~RAI~~a~~~~~~~~----~~~Vy~lG~ 63 (361)
++..+++.++|++.|+....- .++|.-.. -..|.|=| .+||+...+.+.+.. +.++|+.|+
T Consensus 12 ~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~~~~~~~~aVG~ 91 (255)
T PRK05752 12 AEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQPPQQPWFSVGA 91 (255)
T ss_pred HHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCCCcCCEEEEECH
Confidence 345678889999998654443 23332111 12333322 566666655554321 347999995
Q ss_pred cccCHHHHHHHHHcCcEEec--CCccccc------cccc--cCC-CEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcC
Q 018062 64 IIHNPTVNKRLEEMAVQNIP--VEEGKKQ------FDVV--NKG-DVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTC 127 (361)
Q Consensus 64 iIHN~~Vv~~L~~~GV~~v~--~~~~~~~------l~el--~~g-~~VIIrAHGv~~~v~~~l~~kgl~V-----iDATC 127 (361)
..-+.|++.|+...- +....+. +... .+| ..+++|+.+-.+...+.|+++|..| +++.|
T Consensus 92 -----~Ta~al~~~G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~ 166 (255)
T PRK05752 92 -----ATAAILQDYGLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCL 166 (255)
T ss_pred -----HHHHHHHHcCCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecC
Confidence 566889999987332 1111111 1111 234 4678999999999999999999776 55555
Q ss_pred hh
Q 018062 128 PW 129 (361)
Q Consensus 128 P~ 129 (361)
|-
T Consensus 167 ~~ 168 (255)
T PRK05752 167 PD 168 (255)
T ss_pred CC
Confidence 53
No 31
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=72.47 E-value=31 Score=31.43 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=70.6
Q ss_pred cccchhHHHHHHHcCCcccccc-eEE-------------EEeCCCCCcccHHHHHHHHHHHHh-----hCCCCceEEecc
Q 018062 3 QEYTSDIIKKLKENGFEYTWGN-VKV-------------KLAESYGFCWGVERAVQIAYEARK-----QFPEEKIWITNE 63 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-mkI-------------~lA~~~GFC~GV~RAI~~a~~~~~-----~~~~~~Vy~lG~ 63 (361)
+++..++.+.|++.|+....-. +++ .+....+..|==.+|++...+.++ ...+.++|+.|+
T Consensus 10 ~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~ 89 (249)
T PRK05928 10 SPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWPKNKKYAAIGE 89 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCCCCEEEEECH
Confidence 3456778899999986555432 222 223445566666677777665543 122458999996
Q ss_pred cccCHHHHHHHHHcCcEEe--cCCcc-c---cccccc-cCCC-EEEEcCCCCCHHHHHHHHhcCCcEE
Q 018062 64 IIHNPTVNKRLEEMAVQNI--PVEEG-K---KQFDVV-NKGD-VVVLPAFGAAVEEMVTLNNKNVQIV 123 (361)
Q Consensus 64 iIHN~~Vv~~L~~~GV~~v--~~~~~-~---~~l~el-~~g~-~VIIrAHGv~~~v~~~l~~kgl~Vi 123 (361)
= .-+.|++.|+... .+... . +.+.+. ..|. .+++|+-+..+...+.|++.|..++
T Consensus 90 ~-----Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~ 152 (249)
T PRK05928 90 K-----TALALKKLGGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVD 152 (249)
T ss_pred H-----HHHHHHHcCCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEe
Confidence 4 4588999998754 21111 0 111121 1243 4567777777888999999998764
No 32
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.91 E-value=33 Score=31.29 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=51.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhH
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~ 297 (361)
||+++.. +++..-|..+...+++..... + -.+.+.++-......+| +.++.|...++|.+|+.+... .-+.
T Consensus 1 ~Igvi~~-~~~~~~~~~~~~g~~~~~~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~-~~~~ 72 (273)
T cd06310 1 KIALVPK-GTTSDFWQAVKAGAEAAAKEL-G-----VKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDA-KALV 72 (273)
T ss_pred CeEEEec-CCCcHHHHHHHHHHHHHHHHc-C-----CEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCCh-hhhH
Confidence 5777775 466666777877776643322 1 12333222112344555 445555557899999976432 2223
Q ss_pred HHHHHHHhcCCCeEEeCCC
Q 018062 298 HLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~ 316 (361)
...+.+++.+.|...+++.
T Consensus 73 ~~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 73 PPLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred HHHHHHHHCCCCEEEecCC
Confidence 3445555778899999764
No 33
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=70.87 E-value=26 Score=37.83 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=106.2
Q ss_pred ccchhHHHHHHHcC-------CcccccceEEEEeCCCCCcccHHHH------HHHHHHHHhhCCCCceE-EecccccCHH
Q 018062 4 EYTSDIIKKLKENG-------FEYTWGNVKVKLAESYGFCWGVERA------VQIAYEARKQFPEEKIW-ITNEIIHNPT 69 (361)
Q Consensus 4 ~~~~~~~~~~~~~~-------~~~~~~~mkI~lA~~~GFC~GV~RA------I~~a~~~~~~~~~~~Vy-~lG~iIHN~~ 69 (361)
+--|+||.-.|..| .+.+--.|-|..|.. -+|.|=--| ++...+++++.+..-|. =+|=|--|-.
T Consensus 8 EIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADe-av~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~~ 86 (670)
T KOG0238|consen 8 EIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADE-AVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENAE 86 (670)
T ss_pred ceeehhhhHHHHhCCeEEEEEccCccccceeecccc-eeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccccccchH
Confidence 34578888888888 334445688888854 477773211 11122222221112233 4788999999
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEE
Q 018062 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (361)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~III 149 (361)
..+.+++.|+.|+. |+++ .||.-|.--.-++-+++.|+.+|-.-=-.........+...+=||.|.|
T Consensus 87 Fae~c~~~Gi~FiG-----------P~~~--aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMi 153 (670)
T KOG0238|consen 87 FAELCEDAGITFIG-----------PPPS--AIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMI 153 (670)
T ss_pred HHHHHHHcCCeEEC-----------CCHH--HHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEE
Confidence 99999999999996 2332 4788888777888888889999877666677777777777777999886
Q ss_pred EecCCCceeeeecccCCc-EEEEcChhhhHhhhc
Q 018062 150 HGKYSHEETVATASFAGK-YIIVKNMKEAEYVCD 182 (361)
Q Consensus 150 iG~~~HpEV~gi~g~a~~-~ivv~~~~e~~~~~~ 182 (361)
+++.|=.++ .-++.+++|.+...+
T Consensus 154 ---------Ka~~GGGGkGMria~~~~ef~~~~~ 178 (670)
T KOG0238|consen 154 ---------KATAGGGGKGMRIAWSEEEFEEGLE 178 (670)
T ss_pred ---------EeccCCCCcceEeecChHHHHHHHH
Confidence 566665554 567788888766543
No 34
>PRK09453 phosphodiesterase; Provisional
Probab=70.70 E-value=38 Score=30.15 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhCCCCceEEecccccC------------HHHHHHHHHcC--cEEecCC
Q 018062 41 RAVQIAYEARKQFPEEKIWITNEIIHN------------PTVNKRLEEMA--VQNIPVE 85 (361)
Q Consensus 41 RAI~~a~~~~~~~~~~~Vy~lG~iIHN------------~~Vv~~L~~~G--V~~v~~~ 85 (361)
.|.+.+.+.+++.....|+.+|+|++- +.+.+.|++.| +.+|.++
T Consensus 14 ~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GN 72 (182)
T PRK09453 14 PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGN 72 (182)
T ss_pred HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccC
Confidence 355555555543333579999999962 45788888886 6566653
No 35
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=70.66 E-value=40 Score=30.36 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=42.7
Q ss_pred cccccccccHHHHHHHHHHHHchhc-CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~-~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
++.+.|+-|.....+ +++++|+.. .||+ |||+..|+++..+.+++...+.|.+...+..
T Consensus 42 ~~~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~ 101 (299)
T cd04509 42 ELVIYDDQSDPARAL-AAARRLCQQEGVDA--LVGPVSSGVALAVAPVAEALKIPLISPGATA 101 (299)
T ss_pred EEEEecCCCCHHHHH-HHHHHHhcccCceE--EEcCCCcHHHHHHHHHHhhCCceEEeccCCC
Confidence 456778877665555 455666533 5775 5688888888899999999999988776554
No 36
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=70.37 E-value=94 Score=31.38 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=47.9
Q ss_pred HHHHHchh-cCCcEEEEEcCCCCchhHHHHHHHHhcCC--CeEEeCCCCCCCCCCccccccccceeEEEeeecceEEEee
Q 018062 272 DAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGI--PSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKF 348 (361)
Q Consensus 272 ~A~~eLa~-~~vD~miVIGGknSSNT~kL~eia~~~~~--~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (361)
..+.+|.+ ...|++++.|.. ..+..+++-+++.|. +-.+|.+..=..+.....-..-.-.+.++++--..-+-.|
T Consensus 220 ~~l~~l~~~~~a~viil~~~~--~~~~~~~~~a~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~f 297 (452)
T cd06362 220 NIIRKLLSKPNARVVVLFCRE--DDIRGLLAAAKRLNAEGHFQWIASDGWGARNSVVEGLEDVAEGAITIELQSAEVPGF 297 (452)
T ss_pred HHHHHHhhcCCCeEEEEEcCh--HHHHHHHHHHHHcCCcCceEEEEeccccccchhhcccccccceEEEEEecccccccH
Confidence 34555531 257888777753 778899999999887 3456654322221111110011345678888888778788
Q ss_pred hhhhhh
Q 018062 349 QSFFIN 354 (361)
Q Consensus 349 ~~~~~~ 354 (361)
+.|+.+
T Consensus 298 ~~~l~~ 303 (452)
T cd06362 298 DEYFLS 303 (452)
T ss_pred HHHhhh
Confidence 887733
No 37
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.89 E-value=13 Score=30.12 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=39.0
Q ss_pred cHHHHHHHHH--HHHchhcCCcEEEEEcCCCCchh-HHHHHHHHhcCCCeEEeCC
Q 018062 264 CDATQERQDA--MYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 264 C~AT~~RQ~A--~~eLa~~~vD~miVIGGknSSNT-~kL~eia~~~~~~t~~Ie~ 315 (361)
+.....++.+ +.... +++|++||+=+..|=|+ .+.-+.|++.+.|.++..+
T Consensus 30 g~~~~~~~~~~~l~~~i-~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 30 GRDGGDEKKASRLPSKI-KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred ecCCCCccchhHHHHhc-CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 3344444444 77665 67999999999999995 4777899999999988764
No 38
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=69.73 E-value=56 Score=29.23 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=52.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL 299 (361)
|+++...+ +..-|.++.+.+++..... +-++.+.++--.. ..-++.+++|...++|.+|+.+. +++.....
T Consensus 2 ig~i~p~~-~~~~~~~~~~~~~~~a~~~------g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgvi~~~~-~~~~~~~~ 72 (267)
T cd01536 2 IGLVVPSL-NNPFWQAMNKGAEAAAKEL------GVELIVLDAQNDV-SKQIQQIEDLIAQGVDGIIISPV-DSAALTPA 72 (267)
T ss_pred EEEEeccc-cCHHHHHHHHHHHHHHHhc------CceEEEECCCCCH-HHHHHHHHHHHHcCCCEEEEeCC-CchhHHHH
Confidence 56666554 4556777777776643221 2234444443322 22236666766568999998764 34443445
Q ss_pred HHHHHhcCCCeEEeCCCC
Q 018062 300 QEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 300 ~eia~~~~~~t~~Ie~~~ 317 (361)
.+..++.+.|...+....
T Consensus 73 ~~~l~~~~ip~V~~~~~~ 90 (267)
T cd01536 73 LKKANAAGIPVVTVDSDI 90 (267)
T ss_pred HHHHHHCCCcEEEecCCC
Confidence 566667788888887754
No 39
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=69.48 E-value=9.8 Score=36.02 Aligned_cols=58 Identities=24% Similarity=0.225 Sum_probs=45.9
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++.+.||-|.+...+ +++++|. .+ ++..|+|+..|+.+..+..++++.+.|.......
T Consensus 42 ~~~~~D~~~~~~~~~-~~~~~li-~~-~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~~~~ 99 (334)
T cd06342 42 ELVVEDDQADPKQAV-AVAQKLV-DD-GVVGVVGHLNSGVTIPASPIYADAGIVMISPAAT 99 (334)
T ss_pred EEEEecCCCChHHHH-HHHHHHH-hC-CceEEECCCccHhHHHhHHHHHhCCCeEEecCCC
Confidence 567889999887664 6667776 44 7777999999999999999999998887655443
No 40
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.26 E-value=51 Score=30.05 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=50.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL 299 (361)
|+++.-. ++-.-|..+.+-++....+. + -++.++++--....+. +++..+.+.++|.+|+.+ ..|+-...+
T Consensus 2 i~vi~~~-~~~~~~~~~~~~i~~~~~~~-g-----~~~~~~~~~~~~~~~~-~~i~~~~~~~~dgiii~~-~~~~~~~~~ 72 (277)
T cd06319 2 IAYIVSD-LRIPFWQIMGRGVKSKAKAL-G-----YDAVELSAENSAKKEL-ENLRTAIDKGVSGIIISP-TNSSAAVTL 72 (277)
T ss_pred eEEEeCC-CCchHHHHHHHHHHHHHHhc-C-----CeEEEecCCCCHHHHH-HHHHHHHhcCCCEEEEcC-CchhhhHHH
Confidence 4444422 33455777777776543322 2 2344555543333222 455555447899998754 444434567
Q ss_pred HHHHHhcCCCeEEeCCC
Q 018062 300 QEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 300 ~eia~~~~~~t~~Ie~~ 316 (361)
.+.+++.+.|...+...
T Consensus 73 l~~~~~~~ipvV~~~~~ 89 (277)
T cd06319 73 LKLAAQAKIPVVIADIG 89 (277)
T ss_pred HHHHHHCCCCEEEEecC
Confidence 78888889998888753
No 41
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=68.00 E-value=42 Score=29.79 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=16.8
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHHH
Q 018062 94 VNKGDV-VVLPAFGAAVEEMVTLN 116 (361)
Q Consensus 94 l~~g~~-VIIrAHGv~~~v~~~l~ 116 (361)
+.++|. ++|+.-|-++++.+.++
T Consensus 99 ~~~~Dv~I~iS~SG~t~~~i~~~~ 122 (177)
T cd05006 99 GQPGDVLIGISTSGNSPNVLKALE 122 (177)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHH
Confidence 456776 46888899999876553
No 42
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=67.76 E-value=30 Score=35.04 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcCccccccccccccccc-HHHHH-HHHHHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQE-RQDAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~-~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~-RQ~A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|+...+.. ..+.++.+.|++ .+.++.+|+.+| ..+.. =.+++..+.+.++|++|-|||=.+-
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~----------~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 92 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAA----------AGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCI 92 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH----------cCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 4788888655543 556667666654 122355678888 22222 1223333334579999999999999
Q ss_pred hhHHHHHHHHhc
Q 018062 295 NTSHLQEIAEDR 306 (361)
Q Consensus 295 NT~kL~eia~~~ 306 (361)
.|-|...+.-..
T Consensus 93 D~aK~ia~~~~~ 104 (386)
T cd08191 93 DLAKIAGLLLAH 104 (386)
T ss_pred HHHHHHHHHHhC
Confidence 999988776544
No 43
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=67.71 E-value=9.2 Score=37.92 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=42.0
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 018062 33 YGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 33 ~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
..|-..|-|+|+.+-++..+. +.||.+.|++.+||..+..|-.+||..++
T Consensus 227 d~~~Pavl~li~~vi~~a~~~-g~~vsvCGe~a~~p~~~~~Ll~lGi~~lS 276 (293)
T PF02896_consen 227 DPLHPAVLRLIKQVIDAAHKA-GKPVSVCGEMASDPEAIPLLLGLGIRSLS 276 (293)
T ss_dssp -TTSHHHHHHHHHHHHHHHHT-T-EEEEESGGGGSHHHHHHHHHHT-SEEE
T ss_pred CcchHHHHHHHHHHHHHHhhc-CcEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 446678999999998888865 58999999999999999999999998875
No 44
>PRK14072 6-phosphofructokinase; Provisional
Probab=67.66 E-value=8.2 Score=40.05 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=39.8
Q ss_pred HHHHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcC--CCeEEeCCCCCCCCC
Q 018062 267 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRG--IPSYWIDSEKRIGPG 322 (361)
Q Consensus 267 T~~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~--~~t~~Ie~~~eL~~~ 322 (361)
...++++++.|.+-.+|+++||||-.|-.+. +|.|.+++.| .+...| +.-||.+
T Consensus 89 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgI--PkTIDND 145 (416)
T PRK14072 89 RAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGI--PKTIDND 145 (416)
T ss_pred hHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEe--eecccCC
Confidence 4567777777766789999999999998665 8999888887 455544 3444443
No 45
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=67.45 E-value=9.7 Score=36.54 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=42.8
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
++.+.||-|.++.-++ ++++|. .+=.+.+++|+..|+.+..+..++++.+.|.+-
T Consensus 42 ~l~~~D~~~~~~~a~~-~a~~li-~~~~V~~i~G~~~s~~~~a~~~~~~~~~vp~i~ 96 (340)
T cd06349 42 NIVFEDSKSDPRQAVT-IAQKFV-ADPRIVAVLGDFSSGVSMAASPIYQRAGLVQLS 96 (340)
T ss_pred EEEEeCCCCChHHHHH-HHHHHh-ccCCeEEEECCCccHhHHHhHHHHHhCCCeEEe
Confidence 5678899998888774 455665 344566788999999999999999999887653
No 46
>PRK10444 UMP phosphatase; Provisional
Probab=65.92 E-value=56 Score=31.19 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=23.4
Q ss_pred HHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 018062 48 EARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 48 ~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
+.+++.+++++|++|+ +...+.|++.|+...+
T Consensus 75 ~~L~~~~~~~v~~~g~----~~l~~~l~~~g~~~~~ 106 (248)
T PRK10444 75 DFLRRQEGKKAYVIGE----GALIHELYKAGFTITD 106 (248)
T ss_pred HHHHhCCCCEEEEEcC----HHHHHHHHHCcCEecC
Confidence 3344333457999998 7889999999988553
No 47
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=65.61 E-value=63 Score=29.53 Aligned_cols=89 Identities=13% Similarity=0.233 Sum_probs=48.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL 299 (361)
|+++.-+ ++-.-|..+...+.+...+..+ -.+.++++ .+....-.+.++.+.+..+|.+++.+...+. ...+
T Consensus 2 ig~~~~~-~~~~~~~~~~~~i~~~~~~~~g-----~~~~~~~~-~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~~ 73 (270)
T cd06308 2 IGFSQCN-LADPWRAAMNDEIQREASNYPD-----VELIIADA-ADDNSKQVADIENFIRQGVDLLIISPNEAAP-LTPV 73 (270)
T ss_pred EEEEeeC-CCCHHHHHHHHHHHHHHHhcCC-----cEEEEEcC-CCCHHHHHHHHHHHHHhCCCEEEEecCchhh-chHH
Confidence 5555543 4445567777777654332111 12333332 2222222345555544689999888654332 2345
Q ss_pred HHHHHhcCCCeEEeCCC
Q 018062 300 QEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 300 ~eia~~~~~~t~~Ie~~ 316 (361)
.+.+.+.+.|...+++.
T Consensus 74 ~~~~~~~~ipvV~~~~~ 90 (270)
T cd06308 74 VEEAYRAGIPVILLDRK 90 (270)
T ss_pred HHHHHHCCCCEEEeCCC
Confidence 55566788999999863
No 48
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=64.81 E-value=32 Score=31.98 Aligned_cols=122 Identities=11% Similarity=0.020 Sum_probs=70.4
Q ss_pred cccchhHHHHHHHcCCccccc-ceEEE---------EeCC-CCCcccHHHHHHHHHHH---HhhCCCCceEEecccccCH
Q 018062 3 QEYTSDIIKKLKENGFEYTWG-NVKVK---------LAES-YGFCWGVERAVQIAYEA---RKQFPEEKIWITNEIIHNP 68 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~mkI~---------lA~~-~GFC~GV~RAI~~a~~~---~~~~~~~~Vy~lG~iIHN~ 68 (361)
.++.+.+.+.|++.|+....- .+++. +... .+..|==.+||+...+. .....+.++|+.|+=
T Consensus 9 ~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~naV~~~~~~~~~~~~~~~~~~~aVG~~---- 84 (240)
T PRK09189 9 EPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAEAVRHLAALGERLLPHLALPLFAVGEA---- 84 (240)
T ss_pred CCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHHHHHHHHhcchhhHHhcCCeEEEEcHH----
Confidence 345677888999988544432 12221 1111 12223336676665432 111124589999974
Q ss_pred HHHHHHHHcCcEEecCCc-cccccc-----cccC-CCEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcChh
Q 018062 69 TVNKRLEEMAVQNIPVEE-GKKQFD-----VVNK-GDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPW 129 (361)
Q Consensus 69 ~Vv~~L~~~GV~~v~~~~-~~~~l~-----el~~-g~~VIIrAHGv~~~v~~~l~~kgl~V-----iDATCP~ 129 (361)
.-+.|++.|+..+-..+ ..+.|- ...+ +..+++|+-+-.+...+.|+++|..| +++.||-
T Consensus 85 -Ta~~l~~~G~~~~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~ 156 (240)
T PRK09189 85 -TAEAARELGFRHVIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVM 156 (240)
T ss_pred -HHHHHHHcCCCCCcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCC
Confidence 44889999987432111 111121 1123 44678999999999999999999765 6666553
No 49
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=64.73 E-value=30 Score=33.93 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=57.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhC-CCeEEEEecCCCceeeeecccCCcEEEEcChhhh
Q 018062 100 VVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEA 177 (361)
Q Consensus 100 VIIrAHGv~~~v~~~l~~kgl~V-iDATCP~V~kv~~~v~~~~~~-Gy~IIIiG~~~HpEV~gi~g~a~~~ivv~~~~e~ 177 (361)
+++.-.|-.++..+.+++.++.+ ||||=||-..+-+-+-+.+++ |-..+-+-.+.-... .+..+-|.|.+|+
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~------gd~~~~V~d~~ea 120 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPN------GDNWIEVADIEEA 120 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccC------CCceEEecCHHHH
Confidence 77888999999999999999987 999999999998888777765 655555544332221 2356778888888
Q ss_pred Hhh
Q 018062 178 EYV 180 (361)
Q Consensus 178 ~~~ 180 (361)
..+
T Consensus 121 ~~~ 123 (257)
T COG2099 121 AEA 123 (257)
T ss_pred HHH
Confidence 665
No 50
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=64.35 E-value=23 Score=35.25 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=69.4
Q ss_pred cchhHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhC-CCCceEEecccccCHHHHHHHHHcCcEEec
Q 018062 5 YTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQF-PEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~-~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
|-.+.++.|++.|++- .-++---|.-=+..+.-+++.+.+++.+. ...++-++.+---+|..++.+.++=-..+
T Consensus 101 ~i~~~l~~l~~~g~~~----ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l- 175 (316)
T PF00762_consen 101 SIEDALEELKADGVDR----IVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREAL- 175 (316)
T ss_dssp BHHHHHHHHHHTT-SE----EEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHcCCCe----EEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHHH-
Confidence 3455667777665431 22222244444567777888888877663 23478899999999999999877622222
Q ss_pred CCccccccccc--cCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhC
Q 018062 84 VEEGKKQFDVV--NKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (361)
Q Consensus 84 ~~~~~~~l~el--~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~ 143 (361)
+.. ++++.+||+|||+|....+ + .-.||...++..++.+++.
T Consensus 176 --------~~~~~~~~~~llfSaHglP~~~~~---~-------~GdpY~~~~~~t~~~i~~~ 219 (316)
T PF00762_consen 176 --------ERFPRGEPDHLLFSAHGLPQRYVE---D-------KGDPYPAQCEETARLIAER 219 (316)
T ss_dssp --------TTS-HCCCEEEEEEEE--BHHHHT---C-------CT-SHHHHHHHHHHHHHHH
T ss_pred --------HhcCCCCCCEEEEccCCCCccccc---c-------CCCChHHHHHHHHHHHHHH
Confidence 333 2357899999999987652 1 2238999998888887664
No 51
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.12 E-value=56 Score=29.98 Aligned_cols=91 Identities=12% Similarity=-0.030 Sum_probs=51.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
||+++...+.+-.-|..+.+-+++..... + -++.+.++--+......+.++.|....+|.+|+.+...... ..
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~-g-----~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-~~ 73 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDL-G-----VDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDAL-DP 73 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHh-C-----CEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHh-HH
Confidence 35666654424456777777776644332 1 23444444331223333555555556899999987532222 34
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
.++.+++.|.|...+.+.
T Consensus 74 ~l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 74 AIKRAVAAGIPVISFNAG 91 (271)
T ss_pred HHHHHHHCCCeEEEeCCC
Confidence 445667788899999764
No 52
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=63.65 E-value=13 Score=40.35 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=40.3
Q ss_pred HHHHHHHHHHchhcCCcEEEEEcCCCCc-hhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 267 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 267 T~~RQ~A~~eLa~~~vD~miVIGGknSS-NT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
..+++++++.+.+-.+|.+|+|||-.|. |..+|+|-+++.|.+.--|.=+.-||.+
T Consensus 176 ~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND 232 (568)
T PLN02251 176 PEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGD 232 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCC
Confidence 4466777777765679999999999987 5558999998888555555545544444
No 53
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=63.55 E-value=9.4 Score=36.63 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=43.6
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
++.+.||=+++..-. +++++|. .+-++..|+|+..|+.|..+..++++.+.|.+.
T Consensus 42 ~l~~~D~~~~p~~a~-~~a~~Li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (333)
T cd06331 42 ELVVEDPASDPAFAA-KAARRLI-RDDKVDAVFGCYTSASRKAVLPVVERGRGLLFY 96 (333)
T ss_pred EEEEECCCCCHHHHH-HHHHHHH-hccCCcEEEecccHHHHHHHHHHHHhcCceEEe
Confidence 567889999776666 4668886 444677889999999999999999998876554
No 54
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=63.25 E-value=14 Score=33.46 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCeEEEEe
Q 018062 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (361)
Q Consensus 109 ~~v~~~l~~kgl~V-iDATCP~V~kv~~~v~~~~~~Gy~IIIiG 151 (361)
....+.+.++|..+ +|+|+..-....+.++.+.+.||+|.++-
T Consensus 83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~ 126 (199)
T PF06414_consen 83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYY 126 (199)
T ss_dssp HHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEE
Confidence 44566666666655 89999999999999999999999998876
No 55
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=62.98 E-value=13 Score=35.77 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=43.7
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
-++.+.||-|.+..-+ +++++|. .+=.+..|+|+..|+++....+++.+.+.|.+.
T Consensus 40 ielv~~D~~~~p~~a~-~~a~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~ 95 (332)
T cd06344 40 LKVVIANDGNDPEIAK-KVADELV-KDPEILGVVGHYSSDATLAALDIYQKAKLVLIS 95 (332)
T ss_pred EEEEEECCCCChHHHH-HHHHHHh-cccCceEEEcCCCcHHHHHHHHHHhhcCceEEc
Confidence 3667889999887666 4677886 444567788999999999999999998877554
No 56
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=62.15 E-value=17 Score=35.13 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=47.3
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE-eCCCCCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW-IDSEKRIGP 321 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~-Ie~~~eL~~ 321 (361)
++.+.||-|.++.-++ ++++|+ .+-++..|+|+..|+-+..+..++++.+.|... ..+..+|..
T Consensus 43 ~lv~~D~~~~p~~a~~-~~~~li-~~~~V~avvG~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~l~~ 107 (333)
T cd06328 43 EVIVKDDAGNPEVAVS-LARELI-GDDGVDILVGSTSSGVALAVLPVAEENKKILIVEPAAADSITG 107 (333)
T ss_pred EEEEecCCCChHHHHH-HHHHHH-HhcCCeEEEccCCcHHHHHHHHHHHHhCCcEEecCCCCchhhc
Confidence 5678899998888774 566676 344566777999999899999999999887764 334455543
No 57
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=61.81 E-value=64 Score=28.57 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=16.7
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHHH
Q 018062 94 VNKGDV-VVLPAFGAAVEEMVTLN 116 (361)
Q Consensus 94 l~~g~~-VIIrAHGv~~~v~~~l~ 116 (361)
+.++|. ++|+-.|-++++.+.++
T Consensus 70 ~~~~Dv~I~iS~sG~t~~~i~~~~ 93 (179)
T TIGR03127 70 IKKGDLLIAISGSGETESLVTVAK 93 (179)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHH
Confidence 345665 46888899999877653
No 58
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=61.24 E-value=69 Score=29.19 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=51.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++... .+-.-|..+.+-+.+......+ -.+.+.++ .....+| +.++.+.+..+|.+|+.+. .++.+..
T Consensus 2 igvi~~~-~~~~~~~~~~~gi~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~-~~~~~~~ 72 (272)
T cd06301 2 IGVSMAN-FDDNFLTLLRNAMKEHAKVLGG-----VELQFEDA--KNDVATQLSQVENFIAQGVDAIIVVPV-DTAATAP 72 (272)
T ss_pred eeEeecc-cCCHHHHHHHHHHHHHHHHcCC-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEecC-chhhhHH
Confidence 5566544 3445677777777664333111 12333333 2233344 4555655568999998764 4555566
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
+++.+.+.+.|...+.+.
T Consensus 73 ~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 73 IVKAANAAGIPLVYVNRR 90 (272)
T ss_pred HHHHHHHCCCeEEEecCC
Confidence 767778888999888764
No 59
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=61.11 E-value=15 Score=35.74 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=44.2
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
-++.+.|+-+..+.-+ +++++|. .+=.+..++|+..|+++..+..++++.+.|.+.
T Consensus 41 i~lv~~D~~~~p~~a~-~~a~~Li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (347)
T cd06335 41 LELVERDDRGNPARGL-QNAQELA-ADEKVVAVLGGLHTPVALANLEFIQQNKIPLIG 96 (347)
T ss_pred EEEEeccCCCCcHHHH-HHHHHHh-ccCCeEEEEcCCCCHHHHhhhHHHHhcCCcEEe
Confidence 3567889988777766 4567776 444578888999999999999999999887764
No 60
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=60.54 E-value=55 Score=33.13 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=66.0
Q ss_pred chhHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCC-CceEEecccccCHHHHHHHHHcCcEEecC
Q 018062 6 TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPE-EKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (361)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~-~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~ 84 (361)
..++++.|++.|.+-. -++-=-|--=|+-+--+++-+.+++++.++ .++-+...-=-+|--++.+.+. |.+
T Consensus 104 i~~~v~~l~~~gv~~i----v~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~----I~~ 175 (320)
T COG0276 104 IEEAVEELKKDGVERI----VVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADS----IRE 175 (320)
T ss_pred HHHHHHHHHHcCCCeE----EEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHH----HHH
Confidence 3445555555554211 111123444567777777777777754332 2566666666666666666543 221
Q ss_pred Ccccccccccc-CCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhC
Q 018062 85 EEGKKQFDVVN-KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (361)
Q Consensus 85 ~~~~~~l~el~-~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~ 143 (361)
.+.+.+ +++.+|++|||+|....++ | =||-..++..++-..++
T Consensus 176 -----~~~~~~~~~~~llfSaHglP~~~~~~----G-------DpY~~q~~~t~~li~e~ 219 (320)
T COG0276 176 -----KLAKHPRDDDVLLFSAHGLPKRYIDE----G-------DPYPQQCQETTRLIAEA 219 (320)
T ss_pred -----HHHhcCCCCeEEEEecCCCchhhhhc----C-------CchHHHHHHHHHHHHHH
Confidence 233332 4578999999999876543 2 25777777777766553
No 61
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=60.25 E-value=35 Score=33.08 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=45.2
Q ss_pred CCCHH-HHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhC-CCeEEEEecCCCceeeeecccCCcEEEEcChhhhHhh
Q 018062 106 GAAVE-EMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (361)
Q Consensus 106 Gv~~~-v~~~l~~kgl~V-iDATCP~V~kv~~~v~~~~~~-Gy~IIIiG~~~HpEV~gi~g~a~~~ivv~~~~e~~~~ 180 (361)
+.+.+ ..+.+++.+..+ ||||=||-..+.+.+.+.+++ |-..+=+-.+ +.. -.+..+.+.|.+|+..+
T Consensus 51 ~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~---~~~----~~~~~~~v~~~~ea~~~ 121 (256)
T TIGR00715 51 ALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERP---PLA----LGKNIIEVPDIEEATRV 121 (256)
T ss_pred CCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECC---CCC----CCCCeEEeCCHHHHHHH
Confidence 34444 447777777765 999999999999999988775 6666656443 210 01235677888876543
No 62
>PRK00035 hemH ferrochelatase; Reviewed
Probab=60.18 E-value=1e+02 Score=30.40 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhCC-CCceEEecccccCHHHHHHHHHcCcEEecCCcccccccccc---CCCEEEEcCCCCCHHHHHHHH
Q 018062 41 RAVQIAYEARKQFP-EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN---KGDVVVLPAFGAAVEEMVTLN 116 (361)
Q Consensus 41 RAI~~a~~~~~~~~-~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~---~g~~VIIrAHGv~~~v~~~l~ 116 (361)
...+.+.+++++.+ ..++.+..++=.+|..++.+.++=-..++ +.+ +++.|||.+||+|....
T Consensus 138 s~~~~i~~~~~~~~~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~---------~~~~~~~~~~llfs~HG~P~~~~---- 204 (333)
T PRK00035 138 SYFEDLARALAKLRLQPEIRFIRSYYDHPGYIEALAESIREALA---------KHGEDPEPDRLLFSAHGLPQRYI---- 204 (333)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeCCccCCHHHHHHHHHHHHHHHH---------hcCcccCCcEEEEecCCCchHHh----
Confidence 33444555555443 23577777777788877776554222221 111 34679999999997754
Q ss_pred hcCCcEEeCcChhhHHHHHHHHHHhhC
Q 018062 117 NKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (361)
Q Consensus 117 ~kgl~ViDATCP~V~kv~~~v~~~~~~ 143 (361)
++| -|+-..+++.++.+.++
T Consensus 205 ~~g-------d~Y~~~~~~t~~~l~~~ 224 (333)
T PRK00035 205 DKG-------DPYQQQCEETARLLAEA 224 (333)
T ss_pred hcC-------CChHHHHHHHHHHHHHH
Confidence 223 45777777776665543
No 63
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=60.05 E-value=1.7e+02 Score=28.34 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=72.0
Q ss_pred cchhHHHHHHHcCCcc-cccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 018062 5 YTSDIIKKLKENGFEY-TWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 5 ~~~~~~~~~~~~~~~~-~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
-+-+|++.|.+.|++. +.| . -....+...+++...+. .....+ ++.+..|+.=+++..+.|+..+.
T Consensus 23 ~k~~i~~~L~~~Gv~~IEvG-------~-P~~~~~~~~~~~~l~~~---~~~~~v--~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 23 DKIEIAKALDAFGVDYIELT-------S-PAASPQSRADCEAIAKL---GLKAKI--LTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred HHHHHHHHHHHcCCCEEEEE-------C-CCCCHHHHHHHHHHHhC---CCCCcE--EEEecCCHHHHHHHHHcCcCEEE
Confidence 3457888898888654 223 1 22334455555554321 111234 55679999999998888887653
Q ss_pred CCccccccccccCCCEEEEcCCCCCHHH--------HHHHHhcCCcE----EeCc-ChhhHHHHHHHHHHhhCCCeEEEE
Q 018062 84 VEEGKKQFDVVNKGDVVVLPAFGAAVEE--------MVTLNNKNVQI----VDTT-CPWVSKVWTSVEKHKKGDYTSIIH 150 (361)
Q Consensus 84 ~~~~~~~l~el~~g~~VIIrAHGv~~~v--------~~~l~~kgl~V----iDAT-CP~V~kv~~~v~~~~~~Gy~IIIi 150 (361)
= -++-.+.-.-..+|-+++. .+.++++|+.| .|++ || ...+.+.++++.+-|-..+.+
T Consensus 90 i--------~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 90 L--------VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred E--------EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEE
Confidence 1 0010111111235555433 36667889887 5766 88 566778888887766554444
Q ss_pred e
Q 018062 151 G 151 (361)
Q Consensus 151 G 151 (361)
.
T Consensus 161 ~ 161 (262)
T cd07948 161 A 161 (262)
T ss_pred C
Confidence 3
No 64
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=59.53 E-value=17 Score=29.51 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=49.6
Q ss_pred EEEcCCCCCHHHHHHHHhcC--CcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcChhh
Q 018062 100 VVLPAFGAAVEEMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKE 176 (361)
Q Consensus 100 VIIrAHGv~~~v~~~l~~kg--l~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~-~~ivv~~~~e 176 (361)
||+-.--++..+.+.|++.+ +.+||.. +..++++.++|+. ++.|+..+|++---.+... +.+++.+.++
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d-------~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRD-------PERVEELREEGVE-VIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECC-------cHHHHHHHhcccc-cccccchhhhHHhhcCccccCEEEEccCCH
Confidence 44555556678889999987 4446654 6668888889977 6779999999977666554 5666665555
Q ss_pred hHhh
Q 018062 177 AEYV 180 (361)
Q Consensus 177 ~~~~ 180 (361)
..++
T Consensus 74 ~~n~ 77 (116)
T PF02254_consen 74 EENL 77 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 65
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=58.94 E-value=41 Score=34.53 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=52.5
Q ss_pred HHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCC--eEEeCCCCCCCCCCccccccccceeEEEeeecceEEEee
Q 018062 271 QDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIP--SYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKF 348 (361)
Q Consensus 271 Q~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~--t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (361)
...+.+|.+...|+.+|++-..+...+.|.+-+++.|.. -++|.+..=......+.-..-.-.+.+||+.-..-+-.|
T Consensus 233 ~~~l~~lk~~~~da~vvv~~~~~~~~~~~l~~a~~~g~~~~~~wi~s~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~~F 312 (472)
T cd06374 233 DRLLRKLRSRLPKARVVVCFCEGMTVRGLLMAMRRLGVGGEFQLIGSDGWADRDDVVEGYEEEAEGGITIKLQSPEVPSF 312 (472)
T ss_pred HHHHHHHHhcCCCcEEEEEEechHHHHHHHHHHHHhcCCCceEEEEecccccchHhhhcchhhhheeEEEEecCCCCccH
Confidence 345666642357888888655566778888888888864 356665432221111110111346789999888888888
Q ss_pred hhhhhh
Q 018062 349 QSFFIN 354 (361)
Q Consensus 349 ~~~~~~ 354 (361)
+.||.+
T Consensus 313 ~~~l~~ 318 (472)
T cd06374 313 DDYYLK 318 (472)
T ss_pred HHHHHh
Confidence 887753
No 66
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=58.83 E-value=29 Score=33.83 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=46.5
Q ss_pred ccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCch---hHHHHHHHHhcCCCeEEe
Q 018062 253 VNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN---TSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 253 ~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSN---T~kL~eia~~~~~~t~~I 313 (361)
..-++...|+-|+..+--+.+.+.|. .+ .+.+|+|+..|+. +.-+..+|...+.|-.-.
T Consensus 35 ~~~~l~~~d~~~d~~~~~~~~~~~l~-~~-~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~ 96 (362)
T cd06367 35 LSLEAVAVSNDTDPISLLLSVCDLLV-VQ-VVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGI 96 (362)
T ss_pred cceEEEEEecCCCHHHHHHHHHHHhc-cc-ceEEEEecCCCCccchhhhhhhhhhhhcCcEEEe
Confidence 34466778899988777777777785 44 6778889999999 999999999999886543
No 67
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=57.00 E-value=19 Score=37.39 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=35.6
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhc--CCCeEEe
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDR--GIPSYWI 313 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~--~~~t~~I 313 (361)
..++.+++.|.+..+|.+++|||-.|-.|- +|++-+++. +.+...|
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgI 147 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGL 147 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEe
Confidence 356777888876789999999999997665 888888776 4556555
No 68
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=56.51 E-value=13 Score=35.90 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=42.2
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
-++.+.||-|.++.- ++++++|. .+=.+..|||+..|+.+..+.+++++.+.+.+.
T Consensus 41 v~lv~~D~~~~p~~a-~~~~~~Li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (334)
T cd06356 41 VELVDYDTQSDNERY-QQYAQRLA-LQDKVDVVWGGISSASREAIRPIMDRTKQLYFY 96 (334)
T ss_pred EEEEEECCCCCHHHH-HHHHHHHH-HhCCCCEEEeCcchHHHHHHHHHHHhcCceEEe
Confidence 356788999987544 46667776 333466778999999999999999998876553
No 69
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=56.47 E-value=18 Score=39.53 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=38.3
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCc-hhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSS-NT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
.+++++++.+.+-..|.+++|||-.|. +..+|+|-+++.+.+.--|.=+.-||.+
T Consensus 160 e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDND 215 (610)
T PLN03028 160 EQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGD 215 (610)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCC
Confidence 366666666655679999999999987 5558999888775444444444445444
No 70
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=56.32 E-value=24 Score=31.80 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=42.5
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++.+.|+=|.+.... +++++|....+|++ ||+..|.++..+.+++.+.+.|.+...+..+
T Consensus 42 ~~~~~d~~~~~~~~~-~~~~~l~~~~v~~i--ig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~ 101 (298)
T cd06268 42 ELVVEDTQGDPEAAA-AAARELVDDGVDAV--IGPLSSGVALAAAPVAEEAGVPLISPGATSP 101 (298)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHhCCceEE--EcCCcchhHHhhHHHHHhCCCcEEccCCCCc
Confidence 456778877665433 55666654457764 6887788888899999999999887766543
No 71
>PRK12435 ferrochelatase; Provisional
Probab=55.38 E-value=1.1e+02 Score=30.49 Aligned_cols=86 Identities=8% Similarity=0.066 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc
Q 018062 42 AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 121 (361)
Q Consensus 42 AI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ 121 (361)
..+.+.++++..+..++.++.+-=-+|.-++.|.+.=-..++..+ ....+...++|+|||+|....+ +|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~~~-----~~~~~~~~llfSaHslP~~~i~----~G-- 192 (311)
T PRK12435 124 YNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQIP-----EEEREKAVLIVSAHSLPEKIIA----AG-- 192 (311)
T ss_pred HHHHHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHHHHHcC-----cccccceEEEEecCCCchhHhh----CC--
Confidence 455555555433233577777777788888888765211121100 0001224799999999988765 23
Q ss_pred EEeCcChhhHHHHHHHHHHhhC
Q 018062 122 IVDTTCPWVSKVWTSVEKHKKG 143 (361)
Q Consensus 122 ViDATCP~V~kv~~~v~~~~~~ 143 (361)
.||-..++..++..++.
T Consensus 193 -----DpY~~q~~~t~~~v~~~ 209 (311)
T PRK12435 193 -----DPYPDQLEETADLIAEQ 209 (311)
T ss_pred -----CCHHHHHHHHHHHHHHH
Confidence 59999998888887654
No 72
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=55.15 E-value=23 Score=33.93 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=45.6
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
++.+.||-|.++.-. +++++|+ .+-.+..|||+..|+.+..+.+++++.+.|.+...+..
T Consensus 46 ~l~~~D~~~~~~~a~-~~~~~li-~~~~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~~~~~ 105 (345)
T cd06338 46 ELIYYDDQSNPARAA-RAYERLI-TQDKVDFLLGPYSSGLTLAAAPVAEKYGVPMVAGSGAS 105 (345)
T ss_pred EEEEecCCCCHHHHH-HHHHHHH-hhcCccEEecCCcchhHHHHHHHHHHhCCcEEecCCCC
Confidence 567889988877555 5567776 33457777999999999999999999988877665443
No 73
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=54.93 E-value=18 Score=38.95 Aligned_cols=56 Identities=23% Similarity=0.314 Sum_probs=40.1
Q ss_pred HHHHHHHHHHchhcCCcEEEEEcCCCCc-hhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 267 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 267 T~~RQ~A~~eLa~~~vD~miVIGGknSS-NT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
..+++.+++.|.+-.+|.+|+|||-.|. +..+|+|-+++.|.+.--|.=+.-||.+
T Consensus 147 ~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDND 203 (539)
T TIGR02477 147 EEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGD 203 (539)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCC
Confidence 5567777777766789999999999987 4558999888887444444444444443
No 74
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=54.84 E-value=1.4e+02 Score=27.07 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=47.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++.-. .+..-|..+..-+.+...+. + -.+.+.++=. ...+| +.++.|.+..+|+++++|...+. .
T Consensus 2 i~vv~p~-~~~~~~~~~~~~i~~~~~~~-g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiii~~~~~~~---~ 69 (268)
T cd06273 2 IGAIVPT-LDNAIFARVIQAFQETLAAH-G-----YTLLVASSGY--DLDREYAQARKLLERGVDGLALIGLDHSP---A 69 (268)
T ss_pred eEEEeCC-CCCchHHHHHHHHHHHHHHC-C-----CEEEEecCCC--CHHHHHHHHHHHHhcCCCEEEEeCCCCCH---H
Confidence 4455433 33344666666665543221 1 1233333322 23444 34455655679999999765443 4
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
+++.+++.+.|...+.+.
T Consensus 70 ~~~~l~~~~iPvv~~~~~ 87 (268)
T cd06273 70 LLDLLARRGVPYVATWNY 87 (268)
T ss_pred HHHHHHhCCCCEEEEcCC
Confidence 445667788999988764
No 75
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=54.69 E-value=70 Score=31.26 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccc---cHHHHHHHHHHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---CDATQERQDAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTI---C~AT~~RQ~A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|+-.......++.+.+.|++. . ++.+++-+ |... .=++++..+.+.++|++|-|||=..-
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~----------~~~~~~~~~~~p~~~-~v~~~~~~~~~~~~d~IIaiGGGs~~ 91 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-I----------AVHIFDGVGPNPTFE-EVKEAVERARAAEVDAVIAVGGGSTL 91 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-C----------cEEEeCCcCCCcCHH-HHHHHHHHHHhcCcCEEEEeCCchHH
Confidence 47888886665555566666666541 0 11122211 2222 22334444433579999999999999
Q ss_pred hhHHHHHHHHhcCCCeEEeCCC
Q 018062 295 NTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~~ 316 (361)
.+-|.+......+.|-..|-|-
T Consensus 92 D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 92 DTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred HHHHHHHHHhcCCCCEEEEeCC
Confidence 9999988776558888888765
No 76
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=54.58 E-value=26 Score=34.59 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=24.4
Q ss_pred ccCCCEE-EEcCCCCCHHHH---HHHHhcCCcEEeCcC
Q 018062 94 VNKGDVV-VLPAFGAAVEEM---VTLNNKNVQIVDTTC 127 (361)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~---~~l~~kgl~ViDATC 127 (361)
+.++|.| +|+.-|-+|.+. +.++++|..+|=-||
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~ 161 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIAC 161 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 4467765 699999999884 556667777776666
No 77
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=54.50 E-value=1.1e+02 Score=27.16 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=49.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
++++..++ +..-|..+.+-+++..... + -++.+.+. .....+| +.++.+.+..+|++++.+...++..
T Consensus 2 i~~v~~~~-~~~~~~~~~~g~~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-- 70 (264)
T cd06267 2 IGVIVPDI-SNPFFAELLRGIEEAAREA-G-----YSVLLCNS--DEDPEKEREALELLLSRRVDGIILAPSRLDDEL-- 70 (264)
T ss_pred EEEEECCC-CCHHHHHHHHHHHHHHHHc-C-----CEEEEEcC--CCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH--
Confidence 56777665 5566777777776643321 1 12322221 2222344 3444555568999988776644332
Q ss_pred HHHHHHhcCCCeEEeCCCC
Q 018062 299 LQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~ 317 (361)
.+.+.+.+.|...+.+..
T Consensus 71 -~~~~~~~~ipvv~~~~~~ 88 (264)
T cd06267 71 -LEELAALGIPVVLVDRPL 88 (264)
T ss_pred -HHHHHHcCCCEEEecccc
Confidence 556778889988887653
No 78
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.47 E-value=1.4e+02 Score=27.33 Aligned_cols=87 Identities=14% Similarity=0.182 Sum_probs=49.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++.- +++-.-|..+..-+.+...+. + -++.+.+ |....+.| +.+..+.+..+|.+|+.+.. ++....
T Consensus 2 igv~~~-~~~~~~~~~~~~~i~~~~~~~-g-----~~v~~~~--~~~~~~~~~~~i~~~~~~~~Dgiii~~~~-~~~~~~ 71 (282)
T cd06318 2 IGFSQY-TLNSPFFAALTEAAKAHAKAL-G-----YELISTD--AQGDLTKQIADVEDLLTRGVNVLIINPVD-PEGLVP 71 (282)
T ss_pred eeEEec-cccCHHHHHHHHHHHHHHHHc-C-----CEEEEEc--CCCCHHHHHHHHHHHHHcCCCEEEEecCC-ccchHH
Confidence 455442 345566777777776644322 2 1233322 22222333 45566656789999986543 333345
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
+++.+++.|.|...+++.
T Consensus 72 ~i~~~~~~~iPvV~~~~~ 89 (282)
T cd06318 72 AVAAAKAAGVPVVVVDSS 89 (282)
T ss_pred HHHHHHHCCCCEEEecCC
Confidence 667777889999888863
No 79
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=53.26 E-value=31 Score=32.43 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=32.2
Q ss_pred HHHHHHchhcCCcEEEEEcCCCC-chhHHHHHHHHhcCCCeEEeCCC
Q 018062 271 QDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 271 Q~A~~eLa~~~vD~miVIGGknS-SNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++|...+ .++|++||||-.-+ .-...|...|++.|.+.+.|.-.
T Consensus 163 ~~a~~~~--~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~ 207 (222)
T cd01413 163 REAIEAA--KEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNAD 207 (222)
T ss_pred HHHHHHH--hcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCC
Confidence 3444444 47999999998644 44567999999999888877653
No 80
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=52.95 E-value=31 Score=33.25 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=45.8
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe-CCCCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI-DSEKRIG 320 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I-e~~~eL~ 320 (361)
++.+.||-|..+.-+ +++++|. .+=.+..|||+..|+.+..+.+++++.+.|.+.. .+..++.
T Consensus 42 ~l~~~D~~~~~~~a~-~~~~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~t 105 (344)
T cd06345 42 ELVFEDTEGSPEDAV-RAFERLV-SQDKVDAVVGGYSSEVVLALQDVAAENKVPFIVTGAASPEIT 105 (344)
T ss_pred EEEEecCCCCHHHHH-HHHHHHh-ccCCceEEECCcchHHHHHHHHHHHHcCCcEEeccCCCCccc
Confidence 567889999876555 5556665 3335667899999999999999999999887654 3334443
No 81
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=52.73 E-value=1.8e+02 Score=27.80 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCceEEecccccCHHHHHHHHHcCcEEecC
Q 018062 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (361)
Q Consensus 55 ~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~ 84 (361)
+++||++|+ +...+.|++.|+..+++
T Consensus 85 ~~~v~~iG~----~~~~~~l~~~g~~~~~~ 110 (279)
T TIGR01452 85 PKAVYVIGE----EGLRAELDAAGIRLAGD 110 (279)
T ss_pred CCEEEEEcC----HHHHHHHHHCCCEEecC
Confidence 467999997 56788999999998764
No 82
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=52.43 E-value=68 Score=31.20 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=43.0
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++.+.||=| +.... +++++|....|| .|||+..|+++..+.+++.+.+.|.+...+..+
T Consensus 36 ~l~~~D~~~-~~~a~-~~~~~li~~~V~--~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~ 94 (336)
T cd06339 36 ELRVYDTAG-AAGAA-AAARQAVAEGAD--IIVGPLLKENVAALAAAAAELGVPVLALNNDES 94 (336)
T ss_pred eEEEEeCCC-cccHH-HHHHHHHHcCCC--EEEccCCHHHHHHHHhhhccCCCCEEEccCCcc
Confidence 567889988 55444 455667644455 789999999998888999998888776655444
No 83
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=52.30 E-value=17 Score=34.61 Aligned_cols=56 Identities=20% Similarity=0.123 Sum_probs=41.2
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHH-HHHHHhcCCCeEE
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL-QEIAEDRGIPSYW 312 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL-~eia~~~~~~t~~ 312 (361)
-++.+.||-|++..-. +++++|. .+=++..|+|+..|+.+..+ .+++.+.+.|..-
T Consensus 41 iel~~~D~~~~p~~a~-~~a~~li-~~~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~ 97 (312)
T cd06346 41 VTLVTADTQTDPAAGV-AAATKLV-NVDGVPGIVGAACSGVTIAALTSVAVPNGVVMIS 97 (312)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH-hhcCCCEEEccccchhhHhhhhhhhccCCcEEEe
Confidence 3667889988776655 4556665 33345566799999999999 8999888877653
No 84
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=51.55 E-value=67 Score=33.91 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=35.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHch--------hcCCcEEEE
Q 018062 216 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV--------EEKVDLILV 287 (361)
Q Consensus 216 ~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa--------~~~vD~miV 287 (361)
.+++||||+ .-+-.-+.+|...++.++|. -++.++ +.+-+-.+|..+++ .+++|++||
T Consensus 134 ~p~~IGVIT--S~tgAairDIl~~~~rR~P~--------~~viv~----pt~VQG~~A~~eIv~aI~~an~~~~~DvlIV 199 (440)
T COG1570 134 FPKKIGVIT--SPTGAALRDILHTLSRRFPS--------VEVIVY----PTLVQGEGAAEEIVEAIERANQRGDVDVLIV 199 (440)
T ss_pred CCCeEEEEc--CCchHHHHHHHHHHHhhCCC--------CeEEEE----eccccCCCcHHHHHHHHHHhhccCCCCEEEE
Confidence 346899974 44445677777777664332 123333 23333333333322 246999999
Q ss_pred EcCCCC
Q 018062 288 VGGWNS 293 (361)
Q Consensus 288 IGGknS 293 (361)
.=|-.|
T Consensus 200 aRGGGS 205 (440)
T COG1570 200 ARGGGS 205 (440)
T ss_pred ecCcch
Confidence 977665
No 85
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=51.54 E-value=24 Score=31.98 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCCceEEecccc-cCHHHHHHHHHcCcE--EecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcC
Q 018062 43 VQIAYEARKQFPEEKIWITNEII-HNPTVNKRLEEMAVQ--NIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKN 119 (361)
Q Consensus 43 I~~a~~~~~~~~~~~Vy~lG~iI-HN~~Vv~~L~~~GV~--~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kg 119 (361)
++++++......+++|.++|-=- =-.-+.+.|.++|.. +++.. .+++.+.-...-+||.|-|.+.-+....-+.+
T Consensus 32 v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~--~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~ 109 (168)
T cd01080 32 LELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK--TKNLKEHTKQADIVIVAVGKPGLVKGDMVKPG 109 (168)
T ss_pred HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC--chhHHHHHhhCCEEEEcCCCCceecHHHccCC
Confidence 44444443223356777777510 012256777788854 22221 11222222233488999998774444444568
Q ss_pred CcEEeCcChhhH
Q 018062 120 VQIVDTTCPWVS 131 (361)
Q Consensus 120 l~ViDATCP~V~ 131 (361)
..+||...|..-
T Consensus 110 ~viIDla~prdv 121 (168)
T cd01080 110 AVVIDVGINRVP 121 (168)
T ss_pred eEEEEccCCCcc
Confidence 888998888743
No 86
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=51.35 E-value=1.8e+02 Score=27.18 Aligned_cols=90 Identities=10% Similarity=0.166 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCch
Q 018062 217 LVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 217 ~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSN 295 (361)
.+.++++. .+++-.-|.++...+++...+. + -.+.++++--. .++| +.+..+....+|.+++.+. .++=
T Consensus 26 ~~~I~vi~-~~~~~~f~~~~~~~i~~~~~~~-G-----~~~~~~~~~~d--~~~~~~~~~~l~~~~~dgiii~~~-~~~~ 95 (295)
T PRK10653 26 KDTIALVV-STLNNPFFVSLKDGAQKEADKL-G-----YNLVVLDSQNN--PAKELANVQDLTVRGTKILLINPT-DSDA 95 (295)
T ss_pred CCeEEEEe-cCCCChHHHHHHHHHHHHHHHc-C-----CeEEEecCCCC--HHHHHHHHHHHHHcCCCEEEEcCC-ChHH
Confidence 35788887 4455566788888777654332 2 22333333222 3344 3444554467998876543 2221
Q ss_pred hHHHHHHHHhcCCCeEEeCCC
Q 018062 296 TSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~ 316 (361)
+....+.+++.+.|...+++.
T Consensus 96 ~~~~l~~~~~~~ipvV~~~~~ 116 (295)
T PRK10653 96 VGNAVKMANQANIPVITLDRG 116 (295)
T ss_pred HHHHHHHHHHCCCCEEEEccC
Confidence 124456676788899988764
No 87
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=50.99 E-value=1.4e+02 Score=26.90 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhc
Q 018062 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 306 (361)
Q Consensus 228 ~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~ 306 (361)
++..-|..+...+.+...+. + -.+.+.++ ....+++ +.++++.+.++|.+++. +..++.+...++.+++.
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~-g-----~~v~~~~~--~~~~~~~~~~~~~~~~~~~dgii~~-~~~~~~~~~~l~~l~~~ 79 (268)
T cd06323 9 LNNPFFVTLKDGAQKEAKEL-G-----YELTVLDA--QNDAAKQLNDIEDLITRGVDAIIIN-PTDSDAVVPAVKAANEA 79 (268)
T ss_pred ccCHHHHHHHHHHHHHHHHc-C-----ceEEecCC--CCCHHHHHHHHHHHHHcCCCEEEEc-CCChHHHHHHHHHHHHC
Confidence 44556677776666543322 1 12222222 1122333 55555545689999885 45555445555666778
Q ss_pred CCCeEEeCCCC
Q 018062 307 GIPSYWIDSEK 317 (361)
Q Consensus 307 ~~~t~~Ie~~~ 317 (361)
+.|...+++..
T Consensus 80 ~ipvv~~~~~~ 90 (268)
T cd06323 80 GIPVFTIDREA 90 (268)
T ss_pred CCcEEEEccCC
Confidence 89999897753
No 88
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=50.74 E-value=21 Score=27.80 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCe-EEEEecC
Q 018062 110 EEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKY 153 (361)
Q Consensus 110 ~v~~~l~~kgl~V-iDATCP~V~kv~~~v~~~~~~Gy~-IIIiG~~ 153 (361)
++.+.|++.|+.+ +|-. -.++.+..+...+.|+. ++|+|+.
T Consensus 22 ~la~~Lr~~g~~v~~d~~---~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 22 KLYAELQAAGVDVLLDDR---NERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHCCCEEEEECC---CCCcccchhHHHhcCCCEEEEECCc
Confidence 4467777778877 5544 24667777777788887 6666744
No 89
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=50.49 E-value=17 Score=34.72 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=38.2
Q ss_pred ccccccc-cHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 257 FISFNTI-CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 257 ~~v~nTI-C~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
+.+.|+- |.+..- ..++.+|. .+ ++..|||+.+|+.+.-+..+|++.+.|-..
T Consensus 39 ~~~~d~~~~~~~~a-~~~~~~li-~~-~V~aiiG~~~S~~~~av~~~~~~~~vP~Is 92 (327)
T cd06382 39 YDIKRVKPDDSFET-TKKVCDLL-QQ-GVAAIFGPSSSEASSIVQSICDAKEIPHIQ 92 (327)
T ss_pred EEEEEecCCCcHHH-HHHhhhhh-hc-CcEEEECCCChhHHHHHHHHHhccCCCcee
Confidence 3445554 444333 34456665 45 889999999999999999999999888554
No 90
>PTZ00287 6-phosphofructokinase; Provisional
Probab=49.76 E-value=23 Score=42.17 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=42.1
Q ss_pred HHHHHHHHHHchhcCCcEEEEEcCCCCc-hhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 267 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 267 T~~RQ~A~~eLa~~~vD~miVIGGknSS-NT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
...|+++++.+-+-.+|++|||||-.|. +...|+|-+++.|.++--|.=+.-|+.+
T Consensus 914 ~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDND 970 (1419)
T PTZ00287 914 KENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNN 970 (1419)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCC
Confidence 3567888877766689999999999887 5668999888888884445445555544
No 91
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=49.23 E-value=74 Score=31.89 Aligned_cols=103 Identities=12% Similarity=0.140 Sum_probs=81.0
Q ss_pred CHHHHHHHHhcCCc----EEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhhHh
Q 018062 108 AVEEMVTLNNKNVQ----IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY 179 (361)
Q Consensus 108 ~~~v~~~l~~kgl~----ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a----~~~ivv~~~~e~~~ 179 (361)
..++.+.|++|... .-|.-|.=-.+=|+.++.++.+-.-++++|.+|---..=+...+ ..++.|++++|+..
T Consensus 173 t~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~ 252 (294)
T COG0761 173 TAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDP 252 (294)
T ss_pred HHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCH
Confidence 35667888887774 36788888899999999999999999999999877666555433 35899999998753
Q ss_pred hhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 018062 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (361)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~ 242 (361)
+. | + ....+|+.+=..-+..-.++++++|+.
T Consensus 253 ------------------~w---~--------~---~~~~VGvTAGAStPd~lV~~Vi~~l~~ 283 (294)
T COG0761 253 ------------------EW---L--------K---GVKTVGVTAGASTPDWLVQEVIAKLRE 283 (294)
T ss_pred ------------------HH---h--------c---CccEEEEecCCCCCHHHHHHHHHHHHH
Confidence 11 1 1 225799999999999999999999876
No 92
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=49.17 E-value=33 Score=28.93 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=39.6
Q ss_pred eEEecccccCHHHHHHHHHcCc--EEecCCccccccccccCCCEEEEcCCC-CCHHHHHHHHhcCCcEEeCcChhh
Q 018062 58 IWITNEIIHNPTVNKRLEEMAV--QNIPVEEGKKQFDVVNKGDVVVLPAFG-AAVEEMVTLNNKNVQIVDTTCPWV 130 (361)
Q Consensus 58 Vy~lG~iIHN~~Vv~~L~~~GV--~~v~~~~~~~~l~el~~g~~VIIrAHG-v~~~v~~~l~~kgl~ViDATCP~V 130 (361)
|.++++| ++..++.|++ |+ .+.+..+..+-.+.+++=+.++.+... +++++++.+ .++++|=..+-=+
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~--~~Lk~I~~~~~G~ 71 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA--PNLKLISTAGAGV 71 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH--TT-SEEEESSSSC
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc--ceeEEEEEccccc
Confidence 4667777 8889999999 64 444422111111123333556666655 889999888 6888875554433
No 93
>PLN02884 6-phosphofructokinase
Probab=49.04 E-value=25 Score=36.54 Aligned_cols=52 Identities=13% Similarity=0.295 Sum_probs=38.6
Q ss_pred HHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcC--CCeEEeCCCCCCCCC
Q 018062 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRG--IPSYWIDSEKRIGPG 322 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~--~~t~~Ie~~~eL~~~ 322 (361)
.++++++.|-+..+|.++||||-.|-.+. +|.+-|++.| .+...| +.-||.+
T Consensus 131 ~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGI--PkTIDND 185 (411)
T PLN02884 131 KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGV--PKTIDND 185 (411)
T ss_pred cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEec--cccccCC
Confidence 47778888866789999999999998766 7888888877 444444 4445444
No 94
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.86 E-value=1.3e+02 Score=27.35 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=49.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++..++- ..-|.++.+-+.+...+. + -.+.+.++ ....++|.. ++.|.+..+|.+|+.++.. ++..
T Consensus 2 Igvv~~~~~-~~~~~~~~~~i~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgii~~~~~~--~~~~ 70 (269)
T cd06281 2 IGCLVSDIT-NPLLAQLFSGAEDRLRAA-G-----YSLLIANS--LNDPERELEILRSFEQRRMDGIIIAPGDE--RDPE 70 (269)
T ss_pred EEEEecCCc-cccHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCChHHHHHHHHHHHHcCCCEEEEecCCC--CcHH
Confidence 456665433 244566666665533221 1 11222222 112345544 4445556899999998743 3345
Q ss_pred HHHHHHhcCCCeEEeCCCCC
Q 018062 299 LQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~e 318 (361)
+.+.+++.+.|...+++..+
T Consensus 71 ~~~~~~~~~ipvV~i~~~~~ 90 (269)
T cd06281 71 LVDALASLDLPIVLLDRDMG 90 (269)
T ss_pred HHHHHHhCCCCEEEEecccC
Confidence 56667778899999987644
No 95
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=48.54 E-value=1.4e+02 Score=26.49 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=16.0
Q ss_pred cCCCE-EEEcCCCCCHHHHHHHH
Q 018062 95 NKGDV-VVLPAFGAAVEEMVTLN 116 (361)
Q Consensus 95 ~~g~~-VIIrAHGv~~~v~~~l~ 116 (361)
.++|. ++|+.-|-++++.+.++
T Consensus 74 ~~~D~vI~iS~sG~t~~~i~~~~ 96 (179)
T cd05005 74 GPGDLLIAISGSGETSSVVNAAE 96 (179)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHH
Confidence 45665 46899999999876653
No 96
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=48.48 E-value=92 Score=30.10 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=43.2
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
-++.+.||-+.+..-++ ++++|. .+-.+..|||+..|+.+.-+.+++++.+.|.+.-.
T Consensus 48 i~l~~~D~~~~~~~a~~-~a~~li-~~~~v~avvG~~~s~~~~~~~~~~~~~~ip~i~~~ 105 (362)
T cd06343 48 IELIVEDDGYSPPKTVE-QTRKLV-ESDEVFAMVGGLGTPTNLAVQKYLNEKKVPQLFPA 105 (362)
T ss_pred EEEEEecCCCChHHHHH-HHHHHH-hhcCeEEEEecCCcHHHHHhHHHHHhcCCceEecc
Confidence 35667788776655554 555665 34567888999999999999999999998876543
No 97
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=47.98 E-value=29 Score=37.52 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=38.9
Q ss_pred HHHHHHHHHHchhcCCcEEEEEcCCCCc-hhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 267 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 267 T~~RQ~A~~eLa~~~vD~miVIGGknSS-NT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
..+++.+++.|.+-.+|.+++|||-.|. +..+|++-+++.|.+.-.|.=+.-||.+
T Consensus 152 ~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDND 208 (550)
T cd00765 152 EDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGD 208 (550)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCC
Confidence 3456666666655679999999999886 4558999988887544445445545544
No 98
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=47.69 E-value=23 Score=34.49 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=40.1
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCe
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS 310 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t 310 (361)
++.+.||-+.++.-. +++++|. .+=++..|+|+..|+.|..+..++++.+.+.
T Consensus 42 elv~~D~~~~p~~a~-~~a~~Li-~~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~ 94 (348)
T cd06355 42 EAVVEDGASDWPTFA-EKARKLL-TQDKVAAVFGCWTSASRKAVLPVFERHNGLL 94 (348)
T ss_pred EEEEeCCCCCHHHHH-HHHHHHH-HhCCCcEEEeccchhhHHHHHHHHhccCCce
Confidence 567889999887665 4555665 3335667789999999999999999887543
No 99
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.49 E-value=75 Score=31.69 Aligned_cols=103 Identities=9% Similarity=-0.011 Sum_probs=69.1
Q ss_pred cceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec--CC--ccccccccccCCC
Q 018062 23 GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VE--EGKKQFDVVNKGD 98 (361)
Q Consensus 23 ~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~--~~--~~~~~l~el~~g~ 98 (361)
..|-.+..+|.-|+.|+..|++.+.+... + .++|-+=- .|........+.|+..+. +- +.....-++-.+.
T Consensus 167 sD~iLIkdNHi~~~g~i~~av~~~r~~~~-~-~~kIeVEv---~tleea~~a~~agaDiImLDnmspe~l~~av~~~~~~ 241 (290)
T PRK06559 167 SDAIMLKDNHIAAVGSVQKAIAQARAYAP-F-VKMVEVEV---ESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLIAGR 241 (290)
T ss_pred cceEEEcHHHHHhhccHHHHHHHHHHhCC-C-CCeEEEEC---CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcCc
Confidence 35777889999999999999999877654 1 24566553 566666666677887765 11 0000000111345
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcChhh
Q 018062 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 130 (361)
Q Consensus 99 ~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V 130 (361)
..+--|=|++++-.+...+-|+.+|.+.+|+-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEEeCcccc
Confidence 56677779999999888888999988888763
No 100
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=47.42 E-value=41 Score=31.44 Aligned_cols=74 Identities=20% Similarity=0.379 Sum_probs=41.9
Q ss_pred ccchhHHHHHH-HcCCcccccceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEE
Q 018062 4 EYTSDIIKKLK-ENGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQN 81 (361)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~~~~mkI~lA~~~GF-C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~ 81 (361)
+.+++|++.-+ -.|.++.||+. .+.|| |.|.-+ .+++.. . + +.-|..-....+.|-.
T Consensus 65 ~~~~~il~~a~~~~G~pY~~GG~-----s~~G~DCSGfv~---~vy~~~--~-G---------i~LPr~t~~Q~~~g~~- 123 (190)
T PRK10838 65 DVKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSAFVQ---RTFREQ--F-G---------LELPRSTYEQQEMGKS- 123 (190)
T ss_pred hHHHHHHHHHHHHCCCCccCCCC-----CCCCeEcHHHHH---HHHHHh--C-C---------CCCCCCHHHHHhcCcC-
Confidence 34566665433 35899999984 46899 999855 444321 1 1 1112222333445532
Q ss_pred ecCCccccccccccCCCEEEEcCC
Q 018062 82 IPVEEGKKQFDVVNKGDVVVLPAF 105 (361)
Q Consensus 82 v~~~~~~~~l~el~~g~~VIIrAH 105 (361)
|+ .+++.+||.|+|+..
T Consensus 124 V~-------~~~lqpGDLVfF~~~ 140 (190)
T PRK10838 124 VS-------RSKLRTGDLVLFRAG 140 (190)
T ss_pred cc-------cCCCCCCcEEEECCC
Confidence 22 356678998888753
No 101
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=47.29 E-value=1.2e+02 Score=27.78 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhc
Q 018062 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 306 (361)
Q Consensus 228 ~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~ 306 (361)
++-.-|..+.+.+.+...+. + -++.+++ +....+.| +.++.|.+..+|.+|+.+. ++.....+++.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~a~~~-g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~~~~i~~~~~~ 79 (273)
T cd06309 9 AESPWRTAETKSIKDAAEKR-G-----FDLKFAD--AQQKQENQISAIRSFIAQGVDVIILAPV-VETGWDPVLKEAKAA 79 (273)
T ss_pred CCCHHHHHHHHHHHHHHHhc-C-----CEEEEeC--CCCCHHHHHHHHHHHHHcCCCEEEEcCC-ccccchHHHHHHHHC
Confidence 34445566666666543222 1 1222221 22233444 5566666678999998653 333324455667788
Q ss_pred CCCeEEeCCC
Q 018062 307 GIPSYWIDSE 316 (361)
Q Consensus 307 ~~~t~~Ie~~ 316 (361)
+.|...+.+.
T Consensus 80 ~iPvV~~~~~ 89 (273)
T cd06309 80 GIPVILVDRG 89 (273)
T ss_pred CCCEEEEecC
Confidence 8999999874
No 102
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=47.06 E-value=25 Score=30.28 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=0.0
Q ss_pred cccCCCE-EEEcCCCCCHHH---HHHHHhcCCcEE
Q 018062 93 VVNKGDV-VVLPAFGAAVEE---MVTLNNKNVQIV 123 (361)
Q Consensus 93 el~~g~~-VIIrAHGv~~~v---~~~l~~kgl~Vi 123 (361)
.+.+||. |+|++.|-+|.+ .+.++++|+.+|
T Consensus 100 ~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vI 134 (138)
T PF13580_consen 100 DIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVI 134 (138)
T ss_dssp T--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
No 103
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=46.46 E-value=18 Score=34.88 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=40.9
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHH-------HHHHHhcCCCeEEe
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL-------QEIAEDRGIPSYWI 313 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL-------~eia~~~~~~t~~I 313 (361)
-++.+.||=|+++.-.+. +++|. .+ ++..|||+..|+.+..+ ..++...+.|.+..
T Consensus 41 i~l~~~D~~~~p~~a~~~-a~~lv-~~-~v~aiiG~~~s~~~~~~~~~~~~~~~~~~~~~ip~i~~ 103 (342)
T cd06329 41 IELVEEDNKGSPQEALRK-AQKAI-DD-GVRLVVQGNSSSVALALTEAVRKHNQRNPGKEVLYLNY 103 (342)
T ss_pred EEEEeccCCCChHHHHHH-HHHHH-Hh-CCeEEEcccchHHHHHhhhhhhhhhhhhccCCeEEEec
Confidence 356788999998877754 55565 34 77788999999999998 66666666655543
No 104
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=46.24 E-value=53 Score=33.05 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=22.3
Q ss_pred CCCceEEecccccCHHHHHHHHHcCcEEecCC
Q 018062 54 PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85 (361)
Q Consensus 54 ~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~ 85 (361)
.+++||++|.-- ..+.|++.|+......
T Consensus 105 ~~k~Vyvig~~g----i~~eL~~aG~~~~g~~ 132 (306)
T KOG2882|consen 105 FGKKVYVIGEEG----IREELDEAGFEYFGGG 132 (306)
T ss_pred CCCeEEEecchh----hhHHHHHcCceeecCC
Confidence 357899999864 5679999999988754
No 105
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.05 E-value=1.7e+02 Score=27.25 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=48.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhH
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~ 297 (361)
+|+++. ++++-.-|..+.+-+.+...+. + -.+.+.++ ..-.++| +.++.|.+.++|.+|+.+...+...
T Consensus 2 ~ig~i~-~~~~~~~~~~~~~gi~~~a~~~-g-----y~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~- 71 (280)
T cd06315 2 NIIFVA-SDLKNGGILGVGEGVREAAKAI-G-----WNLRILDG--RGSEAGQAAALNQAIALKPDGIVLGGVDAAELQ- 71 (280)
T ss_pred eEEEEe-cccCCcHHHHHHHHHHHHHHHc-C-----cEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH-
Confidence 566665 3445455666766665533221 1 12222222 2123344 4455555678999999974433223
Q ss_pred HHHHHHHhcCCCeEEeCCC
Q 018062 298 HLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~ 316 (361)
..++.+++.+.|...+...
T Consensus 72 ~~~~~~~~~~iPvV~~d~~ 90 (280)
T cd06315 72 AELELAQKAGIPVVGWHAG 90 (280)
T ss_pred HHHHHHHHCCCCEEEecCC
Confidence 4445566778899888764
No 106
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=45.94 E-value=1.4e+02 Score=31.38 Aligned_cols=52 Identities=15% Similarity=-0.015 Sum_probs=33.7
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcE
Q 018062 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQ 80 (361)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~ 80 (361)
+++++..+..||..+.+|.+ ++...++.=..-+. +.-|+|+..+++.=++|.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~---~~a~~~~~i~~~~i-d~~~~~~~~~~~~v~~VP 171 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALN---LMAVLNPNITHTMI-DGALFQDEVEARNIMAVP 171 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHH---HHHHhCCCceEEEE-EchhCHhHHHhcCCcccC
Confidence 78999999999997777664 43434443233344 777888777765444443
No 107
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.54 E-value=1.8e+02 Score=26.56 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=47.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHH-chhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~e-La~~~vD~miVIGGknSSNT~k 298 (361)
|+++.. +++-.-|..+.+-+++...+. .....+-.+.+.++- ...+.|..+.+ |.+..+|.+++.+...++ ...
T Consensus 2 Ig~i~~-~~~~~f~~~~~~gi~~~a~~~-~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~vDgiii~~~~~~~-~~~ 76 (274)
T cd06311 2 IGVSIP-AADHGWTAGIVWHAQAAAKKL-EAAYPDVEFILVTAS--NDTEQQNAQQDLLINRKIDALVILPFESAP-LTQ 76 (274)
T ss_pred eeeecc-CCCCcHHHHHHHHHHHHHHHh-hhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCchh-hHH
Confidence 344443 345555667776666543322 100001122333222 22345544444 654579999998653322 234
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
.++.+++.|.|...+++.
T Consensus 77 ~i~~~~~~gIpvV~~d~~ 94 (274)
T cd06311 77 PVAKAKKAGIFVVVVDRG 94 (274)
T ss_pred HHHHHHHCCCeEEEEcCC
Confidence 445567889999988864
No 108
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=45.40 E-value=65 Score=31.09 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=28.1
Q ss_pred ccccCCCE-EEEcCCC---CCHHHHHHHHhcCCcEEeCcC
Q 018062 92 DVVNKGDV-VVLPAFG---AAVEEMVTLNNKNVQIVDTTC 127 (361)
Q Consensus 92 ~el~~g~~-VIIrAHG---v~~~v~~~l~~kgl~ViDATC 127 (361)
.++.+||+ +||+.-| +|-++-+.+|++|..||=-|-
T Consensus 100 ~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTS 139 (243)
T COG4821 100 LQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTS 139 (243)
T ss_pred hcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEeh
Confidence 35567886 4688877 466889999999999997774
No 109
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=45.16 E-value=43 Score=32.14 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=40.2
Q ss_pred cccccccccHHHHHHHHHHHHchhc-CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~-~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++.+.||-+....-. +++++|... +||+ |+|...|+.+..+.+++++.+.|.+...+.
T Consensus 42 ~~~~~D~~~~~~~a~-~~a~~li~~~~v~a--iig~~~s~~~~~~~~~~~~~~ip~i~~~s~ 100 (346)
T cd06330 42 ELVVRDEAGKPDEAI-REARELVENEGVDM--LIGLISSGVALAVAPVAEELKVFFIATDPG 100 (346)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHhccCCcE--EEcccchHHHHHHHHHHHHcCCeEEEcCCC
Confidence 456778866654444 445555532 4554 458899999999999999999887665443
No 110
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=45.12 E-value=56 Score=37.28 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=76.4
Q ss_pred eE-EecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHH
Q 018062 58 IW-ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 136 (361)
Q Consensus 58 Vy-~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~ 136 (361)
|| =+|=|--|++..++-.+.|+.||.-. .+. ++..|=--.-+..|.+.|+.||=+|=|.+.-+...
T Consensus 84 IhPGYGfLSEn~efA~~c~eaGI~FIGP~-----~e~--------ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~ 150 (1149)
T COG1038 84 IHPGYGFLSENPEFARACAEAGITFIGPK-----PEV--------LDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEA 150 (1149)
T ss_pred ecCCcccccCCHHHHHHHHHcCCEEeCCC-----HHH--------HHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHH
Confidence 44 47889999999999999999999621 111 22333333778899999999999999999988876
Q ss_pred HHHHhhCCCeEEEEecCCCceeeeecccCCc-EEEEcChhhhHhhh
Q 018062 137 VEKHKKGDYTSIIHGKYSHEETVATASFAGK-YIIVKNMKEAEYVC 181 (361)
Q Consensus 137 v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~~-~ivv~~~~e~~~~~ 181 (361)
.+-..+.||.++| ++..|=.++ .-+|.+.+|+...+
T Consensus 151 ~~fa~~~gyPvmi---------KA~~GGGGRGMR~vr~~~~l~~~~ 187 (1149)
T COG1038 151 LEFAEEYGYPVMI---------KAAAGGGGRGMRVVRSEADLAEAF 187 (1149)
T ss_pred HHHHHhcCCcEEE---------EEccCCCccceeeecCHHHHHHHH
Confidence 6666677999886 555554454 57889988876543
No 111
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=45.06 E-value=1.1e+02 Score=30.49 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=47.4
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcCcccccccccccccccH--HHHHHHHHHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICD--ATQERQDAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~-~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~--AT~~RQ~A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|...+... .-++.+.+.|++. +..+.+++.+.. -...=+++++.+....+|++|-|||-..-
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~----------~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 93 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEA----------GIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVL 93 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHc----------CCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 5788888766554 5556676666541 112334444321 12222334444433579999999999999
Q ss_pred hhHHHHHHHH
Q 018062 295 NTSHLQEIAE 304 (361)
Q Consensus 295 NT~kL~eia~ 304 (361)
.+-|.+.+.-
T Consensus 94 D~AK~va~~~ 103 (370)
T cd08551 94 DTAKAIALLA 103 (370)
T ss_pred HHHHHHHHHH
Confidence 9999987664
No 112
>COG1494 GlpX Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]
Probab=44.85 E-value=14 Score=37.04 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=32.8
Q ss_pred CHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHH
Q 018062 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEE 111 (361)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v 111 (361)
+++.+++++++|+. ++ ..-.++|+-.|+.|||.|-||++-.
T Consensus 248 ~~~e~~R~~~mGid-~~---~vl~ledlv~gd~viFaATGvT~G~ 288 (332)
T COG1494 248 GEEERARCKAMGID-VN---KVLSLEDLVRGDNVIFAATGVTDGD 288 (332)
T ss_pred cHHHHHHHHHhCCC-hh---heeeHHHhcCCCceEEEeccCcCcc
Confidence 78899999999992 22 2235778888988999999999865
No 113
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=44.68 E-value=1.4e+02 Score=28.49 Aligned_cols=85 Identities=12% Similarity=0.136 Sum_probs=51.9
Q ss_pred EcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHHHHHH
Q 018062 224 NQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEI 302 (361)
Q Consensus 224 sQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~kL~ei 302 (361)
..+++.-+-|..+.+.+++..... + -++.+.++ .....+| +.++.|.++++|.+++.+... +-....++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~a~~~-g-----~~v~~~~~--~~~~~~q~~~i~~l~~~~vDgIIi~~~~~-~~~~~~l~~ 74 (302)
T TIGR02634 4 SIDDLRLERWQKDRDIFVAAAESL-G-----AKVFVQSA--NGNEAKQISQIENLIARGVDVLVIIPQNG-QVLSNAVQE 74 (302)
T ss_pred ecCccchhhHHHHHHHHHHHHHhc-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCh-hHHHHHHHH
Confidence 456788888888888887754332 1 12222221 2234455 455555557899999986332 223455666
Q ss_pred HHhcCCCeEEeCCCC
Q 018062 303 AEDRGIPSYWIDSEK 317 (361)
Q Consensus 303 a~~~~~~t~~Ie~~~ 317 (361)
+++.+.|...+.+..
T Consensus 75 ~~~~~iPvV~~d~~~ 89 (302)
T TIGR02634 75 AKDEGIKVVAYDRLI 89 (302)
T ss_pred HHHCCCeEEEecCcC
Confidence 778889998887653
No 114
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=44.63 E-value=1.8e+02 Score=26.06 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCC
Q 018062 230 KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGI 308 (361)
Q Consensus 230 ~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~ 308 (361)
-.-|..+.+-+.+.... .+ -.+.++++-.+. .+| +.++.|.+.++|.+|+..+... + ...++.+++.|.
T Consensus 11 ~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~~~~~--~~~~~~~~~l~~~~vdgiii~~~~~~-~-~~~~~~~~~~~i 80 (266)
T cd06282 11 NPVFAECVQGIQEEARA-AG-----YSLLLATTDYDA--EREADAVETLLRQRVDGLILTVADAA-T-SPALDLLDAERV 80 (266)
T ss_pred cchHHHHHHHHHHHHHH-CC-----CEEEEeeCCCCH--HHHHHHHHHHHhcCCCEEEEecCCCC-c-hHHHHHHhhCCC
Confidence 34455565555543222 11 223444432222 333 4555554568999998665432 2 346677888899
Q ss_pred CeEEeCCC
Q 018062 309 PSYWIDSE 316 (361)
Q Consensus 309 ~t~~Ie~~ 316 (361)
|...+.+.
T Consensus 81 pvV~~~~~ 88 (266)
T cd06282 81 PYVLAYND 88 (266)
T ss_pred CEEEEecc
Confidence 98888654
No 115
>PRK06683 hypothetical protein; Provisional
Probab=44.63 E-value=29 Score=28.03 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=32.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCC
Q 018062 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (361)
Q Consensus 280 ~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~ 321 (361)
+++-++||-.+-...-++++.+.|+..+.|.+.+.|..||-.
T Consensus 26 gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~eLG~ 67 (82)
T PRK06683 26 GIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGK 67 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHHHHH
Confidence 566676666666555555778999999999999998887743
No 116
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=44.46 E-value=52 Score=30.67 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=32.8
Q ss_pred HHHHHHHchhcCCcEEEEEcCCCC-chhHHHHHHHHhcCCCeEEeCCC
Q 018062 270 RQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 270 RQ~A~~eLa~~~vD~miVIGGknS-SNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
-++|.+.+ .++|++||||-.-+ .-...|...+++.|.+.+.|.-.
T Consensus 146 ~~~a~~~~--~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 146 WMGAAAAA--CRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred HHHHHHHH--hcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 44555444 47999999998544 34457888999999888877653
No 117
>PLN02449 ferrochelatase
Probab=44.23 E-value=1.5e+02 Score=31.70 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=41.2
Q ss_pred ceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHH
Q 018062 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 136 (361)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~ 136 (361)
++.+...-=-+|.-++.+.+.=-..++. ..+ +++..++|+|||+|....++ +| .||-..+...
T Consensus 243 ~~~~I~~~~~~p~yI~A~a~~I~~~l~~------~~~-~~~~~LlFSAHGlP~~~v~~---~G-------DpY~~q~~~t 305 (485)
T PLN02449 243 QHTVIPSWYQREGYVKAMADLIKKELAK------FSD-PEEVHIFFSAHGVPVSYVEE---AG-------DPYKAQMEEC 305 (485)
T ss_pred eeEEeccccCChHHHHHHHHHHHHHHHh------ccC-cCCcEEEEecCCChhhhhhh---cC-------CChHHHHHHH
Confidence 3455555555666666665432222211 111 33467999999999876632 23 5788887777
Q ss_pred HHHHhhC
Q 018062 137 VEKHKKG 143 (361)
Q Consensus 137 v~~~~~~ 143 (361)
++...++
T Consensus 306 a~lI~~~ 312 (485)
T PLN02449 306 VDLIMEE 312 (485)
T ss_pred HHHHHHH
Confidence 7766553
No 118
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=44.11 E-value=51 Score=32.27 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=41.9
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
++.+.||=|.+..-.+.+.+-+.. -.+..|||+..|+-+.....++.+.+.|..
T Consensus 43 ~~~~~D~~~~~~~a~~~a~~l~~~--~~v~aiiG~~~s~~~~a~~~~~~~~~ip~I 96 (389)
T cd06352 43 TFVYLDTECSESVALLAAVDLYWE--HNVDAFIGPGCPYACAPVARLAAHWNIPMI 96 (389)
T ss_pred EEEEecCCCchhhhHHHHHHHHhh--cCCcEEECCCChhHHHHHHHHHhcCCCCEe
Confidence 567889999887777777665542 335568899999999999999998887754
No 119
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=44.02 E-value=31 Score=27.69 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=32.1
Q ss_pred HHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCC
Q 018062 275 YKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (361)
Q Consensus 275 ~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~ 321 (361)
+.|-.+++-++|+-.+-...-.+++-+.|++.+.|.+.+.|-.||-.
T Consensus 21 kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~eLG~ 67 (82)
T PRK13602 21 KALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGK 67 (82)
T ss_pred HHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 33433556666666555554334777899999999999998877643
No 120
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=43.65 E-value=1.2e+02 Score=30.80 Aligned_cols=107 Identities=6% Similarity=-0.027 Sum_probs=65.9
Q ss_pred CCcccHHHHHHHHHHHHhh---C-----CCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCC
Q 018062 34 GFCWGVERAVQIAYEARKQ---F-----PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 105 (361)
Q Consensus 34 GFC~GV~RAI~~a~~~~~~---~-----~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAH 105 (361)
.| .|.+.++++.++.+++ . .+.+|...|....|+.+.+.+++.|..+|-+. .-.|..-...-=
T Consensus 201 ~~-~~~~~~~~~l~~l~~el~~~~~~~~~~~ril~tG~~~~~~~i~~~iE~~G~~VV~~e--------~c~g~r~~~~~v 271 (377)
T TIGR03190 201 QF-IDKREHNEMLKKVLAALPSRKVERKTGARFMTIGSENDDIAFMAMVESVGATIVIDD--------QCSGTRYFWNAS 271 (377)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCcHHHHHHHHHCCCEEEEEC--------CCcccccccccC
Confidence 35 7999999887665531 1 12368889999988889999999999998532 111211100000
Q ss_pred CCCHHHHHHHHhcCCcEEeCcCh------hhHHHHHHHHHHhhCCCeEEEEe
Q 018062 106 GAAVEEMVTLNNKNVQIVDTTCP------WVSKVWTSVEKHKKGDYTSIIHG 151 (361)
Q Consensus 106 Gv~~~v~~~l~~kgl~ViDATCP------~V~kv~~~v~~~~~~Gy~IIIiG 151 (361)
-.+...++.+.++-+..+-++|. ....+.+.++++.-+| ||.+.
T Consensus 272 ~~~~dpl~alA~~yl~~~~C~~~~~p~~~R~~~i~~lv~~~~~DG--VI~~~ 321 (377)
T TIGR03190 272 KPEDDVIKAIAERYCDRPACPTKDYPVHTRYDHVLGLAKEYNVQG--AIFLQ 321 (377)
T ss_pred CCCccHHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHHHHHhCCCE--EEEec
Confidence 01224567777777766777773 2455666667776665 44444
No 121
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=43.50 E-value=31 Score=37.27 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=36.4
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCc-hhHHHHHHHHhcCCCeEEeCCCCCCCC
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSS-NT~kL~eia~~~~~~t~~Ie~~~eL~~ 321 (361)
.+++.+++.|.+-.+|.+++|||-.|. +..+|+|-+++.+.+.--|.=+.-|+.
T Consensus 151 e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDN 205 (555)
T PRK07085 151 EQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDG 205 (555)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecC
Confidence 466777777765679999999999887 455889988877433333333333333
No 122
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=43.30 E-value=38 Score=32.49 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=44.9
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC-CCCCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID-SEKRIGP 321 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie-~~~eL~~ 321 (361)
++.+.|+-|....-. +++++|. .+-++..|+|+..|+.+..+..++++.+.|.+.-. +..++..
T Consensus 41 ~l~~~D~~~~p~~a~-~~~~~l~-~~~~V~aviG~~~s~~~~a~~~~~~~~~vp~i~~~s~~~~~~~ 105 (334)
T cd06327 41 ELVVADHQNKADVAA-AKAREWI-DRDGVDMIVGGPNSAVALAVQEVAREKKKIYIVTGAGSDDLTG 105 (334)
T ss_pred EEEEecCCCCchHHH-HHHHHHH-hhcCceEEECCccHHHHHHHHHHHHHhCceEEecCCCcccccc
Confidence 566789988765554 4566676 33456677899999999999999999987765433 3334443
No 123
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=43.18 E-value=38 Score=33.12 Aligned_cols=55 Identities=13% Similarity=0.217 Sum_probs=40.8
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
++.+.||-+.+++-. +++++|. .+=++.+|||+.+|+.+..+.+++.+.+.|..-
T Consensus 44 ~lv~~D~~~~p~~a~-~~a~~li-~~d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 98 (357)
T cd06337 44 EIIVRDSQSNPNRAG-LVAQELI-LTDKVDLLLAGGTPDTTNPVSDQCEANGVPCIS 98 (357)
T ss_pred EEEEecCCCCHHHHH-HHHHHHH-hccCccEEEecCCcchhhHHHHHHHHhCCCeEE
Confidence 566889999887776 4556666 333455667998888888889999999877654
No 124
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=42.95 E-value=2.1e+02 Score=25.76 Aligned_cols=87 Identities=14% Similarity=0.211 Sum_probs=47.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++.++. +-.-|.++.+-+++...+. + -.+.+..+ ......+| +.+..|.+.++|.+++.+...+.. .
T Consensus 2 i~vi~~~~-~~~~~~~~~~gi~~~~~~~-~-----~~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~--~ 71 (264)
T cd01574 2 IGVVTTDL-ALHGPSSTLAAIESAAREA-G-----YAVTLSML-AEADEEALRAAVRRLLAQRVDGVIVNAPLDDAD--A 71 (264)
T ss_pred EEEEeCCC-CcccHHHHHHHHHHHHHHC-C-----CeEEEEeC-CCCchHHHHHHHHHHHhcCCCEEEEeCCCCChH--H
Confidence 56777643 3355666776666543221 1 11222211 11112344 445556556899999988755544 3
Q ss_pred HHHHHHhcCCCeEEeCCCC
Q 018062 299 LQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~ 317 (361)
+.+ ..+.|.|...+++..
T Consensus 72 ~~~-~~~~~ipvv~~~~~~ 89 (264)
T cd01574 72 ALA-AAPADVPVVFVDGSP 89 (264)
T ss_pred HHH-HHhcCCCEEEEeccC
Confidence 333 346788999998764
No 125
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.77 E-value=50 Score=32.01 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=43.3
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
++.+.|+=|.+..-. +++++|. .+-++..|+|+..|+.+..+..++.+.+.|..-...
T Consensus 45 ~lv~~D~~~~~~~a~-~~~~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~ 102 (347)
T cd06340 45 ELVFGDSQGNPDIGA-TEAERLI-TEEGVVALVGAYQSAVTLAASQVAERYGVPFVVDGA 102 (347)
T ss_pred EEEEecCCCCHHHHH-HHHHHHh-ccCCceEEecccchHhHHHHHHHHHHhCCCEEeccc
Confidence 455678877665554 4567776 455778888999999999999999999888765443
No 126
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=42.68 E-value=34 Score=34.42 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=35.7
Q ss_pred HHHHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCC--CeEEe
Q 018062 267 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGI--PSYWI 313 (361)
Q Consensus 267 T~~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~--~t~~I 313 (361)
...++.+++.|-+..+|.+++|||-.|-.+- +|.|.+++.+. +...|
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigi 127 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGL 127 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEe
Confidence 4456777777766789999999999998665 88998887654 44544
No 127
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=42.37 E-value=30 Score=34.67 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=40.8
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
-++.+.||-+.+..-++ ++++|.. +=.+..|||+..|+.+..+..++.+.+.+.+
T Consensus 42 ielv~~D~~~~p~~a~~-~a~~li~-~d~v~~viG~~~S~~~~A~~~~~~~~~~~~i 96 (374)
T TIGR03669 42 IELIDPDPQSDNERYQE-LTRRLLN-RDKVDALWAGYSSATREAIRPIIDRNEQLYF 96 (374)
T ss_pred eEEEEeCCCCCHHHHHH-HHHHHHH-hCCCCEEEcCCchHHHHHHHHHHHhcCceEE
Confidence 35678899998776664 4555652 2235567999999999999999998876654
No 128
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=42.33 E-value=52 Score=27.73 Aligned_cols=98 Identities=16% Similarity=0.301 Sum_probs=53.5
Q ss_pred ccchhHHHHHHHcCCcccccceEEEEeCCCC-CcccHHHHHHHHHHHHhhCCC--CceEEecccccCHHHHHHHHHcCcE
Q 018062 4 EYTSDIIKKLKENGFEYTWGNVKVKLAESYG-FCWGVERAVQIAYEARKQFPE--EKIWITNEIIHNPTVNKRLEEMAVQ 80 (361)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~mkI~lA~~~G-FC~GV~RAI~~a~~~~~~~~~--~~Vy~lG~iIHN~~Vv~~L~~~GV~ 80 (361)
.|--.++..|++.|+ +|+.-.+.+ .=.|.+ ++..+++-++ .-+.+.-+--|-+.+++++.++|++
T Consensus 14 ~~g~~v~~~l~~~G~-------~v~~Vnp~~~~i~G~~-----~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~ 81 (116)
T PF13380_consen 14 KFGYRVLRNLKAAGY-------EVYPVNPKGGEILGIK-----CYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVK 81 (116)
T ss_dssp SHHHHHHHHHHHTT--------EEEEESTTCSEETTEE------BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-S
T ss_pred ChHHHHHHHHHhCCC-------EEEEECCCceEECcEE-----eeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCC
Confidence 455567888888664 333333332 112221 2222332111 1355666667778888888887754
Q ss_pred EecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhH
Q 018062 81 NIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (361)
Q Consensus 81 ~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~ 131 (361)
. |++-+....++..+.+++.|+.++---|+.|.
T Consensus 82 ~------------------v~~~~g~~~~~~~~~a~~~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 82 A------------------VWLQPGAESEELIEAAREAGIRVIGPNCLGVV 114 (116)
T ss_dssp E------------------EEE-TTS--HHHHHHHHHTT-EEEESS-HHHH
T ss_pred E------------------EEEEcchHHHHHHHHHHHcCCEEEeCCcceEE
Confidence 3 33444488899999999999999999998763
No 129
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=42.30 E-value=77 Score=29.15 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=25.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEec
Q 018062 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGK 152 (361)
Q Consensus 100 VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~ 152 (361)
=|++||=+|...++.+ ++..++|+.+||-|-
T Consensus 35 ~VvSAHRTPe~m~~ya----------------------~~a~~~g~~viIAgA 65 (162)
T COG0041 35 RVVSAHRTPEKMFEYA----------------------EEAEERGVKVIIAGA 65 (162)
T ss_pred EEEeccCCHHHHHHHH----------------------HHHHHCCCeEEEecC
Confidence 4699999998887766 457789999999884
No 130
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=42.16 E-value=3.9e+02 Score=27.15 Aligned_cols=105 Identities=12% Similarity=0.203 Sum_probs=57.5
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHH----hh--CCCCceEEecccc--cCHHHHHHHHHcCcEEecCCcccccccccc
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEAR----KQ--FPEEKIWITNEII--HNPTVNKRLEEMAVQNIPVEEGKKQFDVVN 95 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~----~~--~~~~~Vy~lG~iI--HN~~Vv~~L~~~GV~~v~~~~~~~~l~el~ 95 (361)
+..|+.+...||-.....+.+.+.+++ .+ .....|-.+|++- -..+...-|++.|+.++.-.++ .++++++
T Consensus 118 ~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d-~~~~~~~ 196 (396)
T cd01979 118 GVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPP-RRYTDLP 196 (396)
T ss_pred CCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCC-CChHHhh
Confidence 357888889999643455555554433 11 1124688888631 1134556678999998632221 1345554
Q ss_pred C--CCEEEEcCCCCCHHHHHHHHh-cCCcEEeCcChh
Q 018062 96 K--GDVVVLPAFGAAVEEMVTLNN-KNVQIVDTTCPW 129 (361)
Q Consensus 96 ~--g~~VIIrAHGv~~~v~~~l~~-kgl~ViDATCP~ 129 (361)
. .+.+++..|......-+.|++ .|...+...=|+
T Consensus 197 ~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~ 233 (396)
T cd01979 197 VIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPI 233 (396)
T ss_pred ccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCc
Confidence 3 234555555444455666655 466565544444
No 131
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=42.14 E-value=2.4e+02 Score=27.15 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec--CCcc----c----cccccccCCCEEEEcCCCCC
Q 018062 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEG----K----KQFDVVNKGDVVVLPAFGAA 108 (361)
Q Consensus 39 V~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~--~~~~----~----~~l~el~~g~~VIIrAHGv~ 108 (361)
|.|.+.+|++..+. +..|+.+..= +.....+.+++.|..+.. +..+ . +.+.+. ..|.||+-..+++
T Consensus 17 v~Rcl~LA~~l~~~--g~~v~f~~~~-~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~-~~d~vV~D~y~~~ 92 (279)
T TIGR03590 17 VMRCLTLARALHAQ--GAEVAFACKP-LPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEE-KFDILIVDHYGLD 92 (279)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCC-CCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhc-CCCEEEEcCCCCC
Confidence 78999999988654 3345444322 345557899999988653 2110 0 001111 2356777777888
Q ss_pred HHHHHHHHhcCCcE--EeCc
Q 018062 109 VEEMVTLNNKNVQI--VDTT 126 (361)
Q Consensus 109 ~~v~~~l~~kgl~V--iDAT 126 (361)
++..+.+++++..+ +|=.
T Consensus 93 ~~~~~~~k~~~~~l~~iDD~ 112 (279)
T TIGR03590 93 ADWEKLIKEFGRKILVIDDL 112 (279)
T ss_pred HHHHHHHHHhCCeEEEEecC
Confidence 88888887766553 5543
No 132
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=42.11 E-value=28 Score=26.85 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.7
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 018062 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (361)
Q Consensus 102 IrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~I 147 (361)
+..||.||.+.+-++.-|+. -...+|...+.+.++||--
T Consensus 19 ~~~~G~~Pt~rEIa~~~g~~-------S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 19 IEENGYPPTVREIAEALGLK-------STSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHSS---HHHHHHHHTSS-------SHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHHHHHhCCC-------ChHHHHHHHHHHHHCcCcc
Confidence 34589999999999998884 3478999999999999853
No 133
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=41.68 E-value=1.9e+02 Score=26.64 Aligned_cols=87 Identities=9% Similarity=-0.032 Sum_probs=46.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++.- +++-.-|..+..-+.+..... + -++.+.++-.+...+.| +.++.+.+..+|.+|+.+...+.. ..
T Consensus 2 Igvi~~-~~~~~f~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~-~~ 73 (268)
T cd06306 2 LCVLYP-HLKDAYWLSVNYGMVEEAKRL-G-----VSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGL-NE 73 (268)
T ss_pred eEEEcC-CCCCHHHHHHHHHHHHHHHHc-C-----CEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhH-HH
Confidence 444442 345556777777776644322 1 22333322221222334 456665557899999986433222 23
Q ss_pred HHHHHHhcCCCeEEeCC
Q 018062 299 LQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~ 315 (361)
| .-+++.|.|...+.+
T Consensus 74 ~-~~~~~~giPvV~~~~ 89 (268)
T cd06306 74 I-LQQVAASIPVIALVN 89 (268)
T ss_pred H-HHHHHCCCCEEEecc
Confidence 4 446678899988854
No 134
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=41.54 E-value=30 Score=34.62 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 282 vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
-.+..|||+..|+-|..+..+|.+.+.|-..-
T Consensus 106 ~~V~aIiGp~~S~~~~av~~i~~~~~vp~is~ 137 (410)
T cd06363 106 PRVVAVIGPDSSTLALTVAPLFSFFLIPQISY 137 (410)
T ss_pred CCeEEEECCCccHHHHHHHHHhcccccccccc
Confidence 46888999999999999999999998776533
No 135
>PF15498 Dendrin: Nephrin and CD2AP-binding protein, Dendrin
Probab=41.54 E-value=5.7 Score=41.84 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=27.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhH
Q 018062 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (361)
Q Consensus 99 ~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~ 131 (361)
..-=|||-++..-.--+...|+.||||||-..+
T Consensus 378 K~trRaHTlPRssrgpa~geGvFVIDATCVVIr 410 (657)
T PF15498_consen 378 KETRRAHTLPRSSRGPARGEGVFVIDATCVVIR 410 (657)
T ss_pred ccccccccCCcccCCCCCCCceEEEeeeEEEEe
Confidence 456799999988888899999999999996543
No 136
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=41.49 E-value=2.4e+02 Score=27.45 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
.+|+++. +.+.-.-|..+.+-+++..... + -.+.+.++ .-..++| +.++.|.+.++|.+|+.+...+...
T Consensus 26 ~~Ig~i~-~~~~~~f~~~~~~gi~~~a~~~-g-----~~l~i~~~--~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~ 96 (330)
T PRK10355 26 VKIGMAI-DDLRLERWQKDRDIFVKKAESL-G-----AKVFVQSA--NGNEETQMSQIENMINRGVDVLVIIPYNGQVLS 96 (330)
T ss_pred ceEEEEe-cCCCchHHHHHHHHHHHHHHHc-C-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHH
Confidence 4677766 6677778888888887654322 1 12233222 1122334 4455565578999999874332233
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
...+.+.+.+.|...+++.
T Consensus 97 -~~l~~~~~~~iPvV~id~~ 115 (330)
T PRK10355 97 -NVIKEAKQEGIKVLAYDRM 115 (330)
T ss_pred -HHHHHHHHCCCeEEEECCC
Confidence 3445566778899999774
No 137
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=41.45 E-value=1.3e+02 Score=32.97 Aligned_cols=116 Identities=9% Similarity=0.027 Sum_probs=66.2
Q ss_pred ccchhHHHHHHHcCCccccc-ceEEEE--------------eCCCCCcccHHHHHHHHHHHHhh-C-CCCceEEeccccc
Q 018062 4 EYTSDIIKKLKENGFEYTWG-NVKVKL--------------AESYGFCWGVERAVQIAYEARKQ-F-PEEKIWITNEIIH 66 (361)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~mkI~l--------------A~~~GFC~GV~RAI~~a~~~~~~-~-~~~~Vy~lG~iIH 66 (361)
+..+.+.+.|++.|+....- .++|.- ....+..|==.+||+.+.+.+.. + .+-++|+.|+=-+
T Consensus 13 ~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~~~i~AVG~~Ta 92 (656)
T PRK06975 13 GQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHALPVAVVGPGSV 92 (656)
T ss_pred hHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccCCeEEEECHHHH
Confidence 34567888899888543332 233321 12223333334555554443322 1 1358999997544
Q ss_pred CHHHHHHHHHcCcEEecC-----------Ccc------c-ccccc----ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEe
Q 018062 67 NPTVNKRLEEMAVQNIPV-----------EEG------K-KQFDV----VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (361)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~-----------~~~------~-~~l~e----l~~g~~VIIrAHGv~~~v~~~l~~kgl~ViD 124 (361)
+.|++.|+...-- ++. . +.+.. ++...++|+|+.|-.+...+.|+++|..|.-
T Consensus 93 -----~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L~~~L~~~Ga~V~~ 167 (656)
T PRK06975 93 -----AALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWLAERLREAGAEVEL 167 (656)
T ss_pred -----HHHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHHHHHHHHCCCEEEE
Confidence 7899999863311 010 0 11111 2222357899999999999999999987743
No 138
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=41.33 E-value=65 Score=30.00 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=38.1
Q ss_pred HHHHHHHHchhcCCcEEEEEcCC-CCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 269 ERQDAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGGk-nSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
.||=+ .++ .+-|++|+|-+. +|.|..+.++.|++.|.++..|.+..+
T Consensus 100 ~~ql~--~~~-~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 100 AKQVR--ALG-HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred HHHHH--HcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 45544 365 678999998774 788899999999999999999988643
No 139
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=41.30 E-value=2.5e+02 Score=26.42 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=49.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++.- +++..-|..+.+.+.+...+ ++- .+.+. .-+....+.| +.++.+.+.++|.+|+.+ .+++....
T Consensus 2 I~vi~~-~~~~~f~~~i~~gi~~~a~~-~g~-----~v~~~-~~~~~d~~~~~~~i~~~~~~~~DgiIi~~-~~~~~~~~ 72 (298)
T cd06302 2 IAFVPK-VTGIPYFNRMEEGAKEAAKE-LGV-----DAIYV-GPTTADAAGQVQIIEDLIAQGVDAIAVVP-NDPDALEP 72 (298)
T ss_pred EEEEEc-CCCChHHHHHHHHHHHHHHH-hCC-----eEEEE-CCCCCCHHHHHHHHHHHHhcCCCEEEEec-CCHHHHHH
Confidence 455553 34455677777777664333 221 12111 0112233444 444445446899999985 44454456
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
+.+-+++.+.|...+.+.
T Consensus 73 ~~~~~~~~~iPvV~v~~~ 90 (298)
T cd06302 73 VLKKAREAGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHCCCeEEEEcCC
Confidence 666677888999888764
No 140
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=41.29 E-value=3e+02 Score=25.57 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=64.3
Q ss_pred cccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC-cEEecCCccccccccccCC
Q 018062 19 EYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA-VQNIPVEEGKKQFDVVNKG 97 (361)
Q Consensus 19 ~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~G-V~~v~~~~~~~~l~el~~g 97 (361)
.+.+.+.+|++. .|-+=|...+...++. +..|.+..|=+| + .++.|.+.| +..+...- ..+++ .+
T Consensus 4 ~l~l~gk~vlVv------GgG~va~rk~~~Ll~~--ga~VtVvsp~~~-~-~l~~l~~~~~i~~~~~~~---~~~dl-~~ 69 (205)
T TIGR01470 4 FANLEGRAVLVV------GGGDVALRKARLLLKA--GAQLRVIAEELE-S-ELTLLAEQGGITWLARCF---DADIL-EG 69 (205)
T ss_pred EEEcCCCeEEEE------CcCHHHHHHHHHHHHC--CCEEEEEcCCCC-H-HHHHHHHcCCEEEEeCCC---CHHHh-CC
Confidence 344556677776 6677788888888874 457888888777 3 445566654 66655321 11233 35
Q ss_pred CEEEEcCCCCC---HHHHHHHHhcCCcEEeCcCh
Q 018062 98 DVVVLPAFGAA---VEEMVTLNNKNVQIVDTTCP 128 (361)
Q Consensus 98 ~~VIIrAHGv~---~~v~~~l~~kgl~ViDATCP 128 (361)
..+||-|-|.+ ..+++.++++|+-|-.+..|
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCc
Confidence 66888998887 46788888899888666655
No 141
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.17 E-value=45 Score=32.03 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=40.2
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
++.+.|+-|....-.+ ++++|. .+-.+..|+|+..|+.+.....++++.+.|.+.
T Consensus 42 ~lv~~D~~~~p~~a~~-~~~~li-~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 96 (344)
T cd06348 42 KLVIEDSGGDEAEAIN-AFQTLI-NKDRVLAIIGPTLSQQAFAADPIAERAGVPVVG 96 (344)
T ss_pred EEEEecCCCChHHHHH-HHHHHh-hhcCceEEECCCCcHHHHhhhHHHHhCCCCEEe
Confidence 5678899998865554 455565 233466778988888888888999998887654
No 142
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=41.04 E-value=33 Score=29.69 Aligned_cols=46 Identities=20% Similarity=0.472 Sum_probs=39.2
Q ss_pred chhcCCcEEEEEcCCC-CchhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 277 MVEEKVDLILVVGGWN-SSNTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 277 La~~~vD~miVIGGkn-SSNT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
+-.+++.++++-.+-. ...+.+|-.+|++.+.|-.+|.|..+|...
T Consensus 39 i~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a 85 (116)
T COG1358 39 IERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKA 85 (116)
T ss_pred HHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHH
Confidence 3346799999999988 788889999999999999999999887543
No 143
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=40.90 E-value=54 Score=32.07 Aligned_cols=58 Identities=24% Similarity=0.263 Sum_probs=37.3
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCch-hHHHHHHHHhcCCCeEEeCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSN-T~kL~eia~~~~~~t~~Ie~~ 316 (361)
++..|+.--... .-+.| .+.+ .++|++||||..-+-. ...|...|++.|.+.+.|.-.
T Consensus 177 ~VV~FGE~lp~~-~~~~a-~~~~-~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~ 235 (271)
T PTZ00409 177 NVILFGEVIPKS-LLKQA-EKEI-DKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNIS 235 (271)
T ss_pred cEEEeCCcCCHH-HHHHH-HHHH-HcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCC
Confidence 445566543332 22334 4444 4799999999854432 347888999999988877643
No 144
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.88 E-value=1.5e+02 Score=27.32 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=49.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
+|+++++ ++-.-|..+.+.+.+.... .+ -.+.+.+ +....++| +.++.+.+.++|.+|+.+.. +.-...
T Consensus 2 ~~~~~~~-~~~~f~~~~~~gi~~~~~~-~G-----~~~~~~~--~~~d~~~~~~~i~~~~~~~vdgiii~~~~-~~~~~~ 71 (272)
T cd06313 2 AAFSNIG-LQATWCAQGKQAADEAGKL-LG-----VDVTWYG--GALDAVKQVAAIENMASQGWDFIAVDPLG-IGTLTE 71 (272)
T ss_pred cceeecc-cCChHHHHHHHHHHHHHHH-cC-----CEEEEec--CCCCHHHHHHHHHHHHHcCCCEEEEcCCC-hHHhHH
Confidence 4566655 4555677777777654322 11 1233322 22344566 34445555789999997532 222344
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
+++-+.+.+.|...+.+.
T Consensus 72 ~i~~~~~~~iPvV~~~~~ 89 (272)
T cd06313 72 AVQKAIARGIPVIDMGTL 89 (272)
T ss_pred HHHHHHHCCCcEEEeCCC
Confidence 455566778999988864
No 145
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=40.85 E-value=33 Score=32.51 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=27.8
Q ss_pred EEeCcChhhHHHHHHHHHHhhCCCeEEEEec
Q 018062 122 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGK 152 (361)
Q Consensus 122 ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~ 152 (361)
..|-.|||=+|.|..+.++.+.|+++.++.-
T Consensus 114 FtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~ 144 (232)
T PRK10877 114 FTDITCGYCHKLHEQMKDYNALGITVRYLAF 144 (232)
T ss_pred EECCCChHHHHHHHHHHHHhcCCeEEEEEec
Confidence 4899999999999999999999999988743
No 146
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=40.75 E-value=53 Score=31.63 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=42.4
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
-++.+.||-|.+..-.+ ++++|. .+-.+..|||+..|+.+..+..++.+.+.|-.-..
T Consensus 40 i~~~~~D~~~~~~~a~~-~a~~l~-~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~ 97 (350)
T cd06366 40 LVLHVRDSKCDPVQAAS-AALDLL-ENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFA 97 (350)
T ss_pred EEEEecCCCCCHHHHHH-HHHHHh-ccCCceEEECCCcHHHHHHHHHHhhcCCeeEEecc
Confidence 35678899888765544 455565 33457778899999999999999999887754433
No 147
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.72 E-value=2.3e+02 Score=25.62 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHh
Q 018062 227 TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAED 305 (361)
Q Consensus 227 T~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~ 305 (361)
+.+..-|.++.+-+++..... + -++.+.+ +....++| +.++.+.+..+|.+++.+.. +.-+...++.+++
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~-g-----~~~~i~~--~~~~~~~~~~~~~~~~~~~vdgiii~~~~-~~~~~~~~~~~~~ 78 (267)
T cd06322 8 TQQHPFYIELANAMKEEAKKQ-K-----VNLIVSI--ANQDLNKQLSDVEDFITKKVDAIVLSPVD-SKGIRAAIAKAKK 78 (267)
T ss_pred CcccHHHHHHHHHHHHHHHhc-C-----CEEEEec--CCCCHHHHHHHHHHHHHcCCCEEEEcCCC-hhhhHHHHHHHHH
Confidence 344455677777776643221 1 1233332 33445566 44555555789999997642 2223445566778
Q ss_pred cCCCeEEeCCC
Q 018062 306 RGIPSYWIDSE 316 (361)
Q Consensus 306 ~~~~t~~Ie~~ 316 (361)
.+.|...++..
T Consensus 79 ~~ipvV~~~~~ 89 (267)
T cd06322 79 AGIPVITVDIA 89 (267)
T ss_pred CCCCEEEEccc
Confidence 88999888764
No 148
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=40.67 E-value=50 Score=31.92 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=34.5
Q ss_pred HHHHHHHHchhcCCcEEEEEcCCCCch-hHHHHHHHHhcCCCeEEeCCC
Q 018062 269 ERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGGknSSN-T~kL~eia~~~~~~t~~Ie~~ 316 (361)
.-+.|.+.+ .++|++||||-.-+-. ...|.+.+++.|.+.+.|.-.
T Consensus 194 ~~~~a~~~~--~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~ 240 (260)
T cd01409 194 RVVTAAARL--AEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIG 240 (260)
T ss_pred HHHHHHHHH--hcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCC
Confidence 345555555 3699999999866655 468999999999998888653
No 149
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=40.56 E-value=2.9e+02 Score=26.28 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=55.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
.||++-=.. +-.-|.+++..+.+...+. + -.+...+|=-+. +++++++.|.+.+||.+|+.+..++ ...
T Consensus 3 ~IGvivp~~-~npff~~ii~gIe~~a~~~-G-----y~l~l~~t~~~~--~~e~~i~~l~~~~vDGiI~~s~~~~--~~~ 71 (279)
T PF00532_consen 3 TIGVIVPDI-SNPFFAEIIRGIEQEAREH-G-----YQLLLCNTGDDE--EKEEYIELLLQRRVDGIILASSEND--DEE 71 (279)
T ss_dssp EEEEEESSS-TSHHHHHHHHHHHHHHHHT-T-----CEEEEEEETTTH--HHHHHHHHHHHTTSSEEEEESSSCT--CHH
T ss_pred EEEEEECCC-CCcHHHHHHHHHHHHHHHc-C-----CEEEEecCCCch--HHHHHHHHHHhcCCCEEEEecccCC--hHH
Confidence 355444222 3344788888887643322 2 123334443333 3337777777789999999955444 567
Q ss_pred HHHHHHhcCCCeEEeCCCCCCC
Q 018062 299 LQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~eL~ 320 (361)
|..+.+. +.|..++....+-+
T Consensus 72 l~~~~~~-~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 72 LRRLIKS-GIPVVLIDRYIDNP 92 (279)
T ss_dssp HHHHHHT-TSEEEEESS-SCTT
T ss_pred HHHHHHc-CCCEEEEEeccCCc
Confidence 7778876 88999999885444
No 150
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.36 E-value=2e+02 Score=26.13 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=49.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHH-HHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~-~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++..+ ++-.-|.++...+.+..... +. +-.+.+. .+....++|.+. +.+.+..+|.+|+.+...+.+...
T Consensus 2 Ig~v~~~-~~~~~~~~~~~gi~~~~~~~-~~---~~~~~~~--~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~ 74 (271)
T cd06321 2 IGVSVGD-LGNPFFVALAKGAEAAAKKL-NP---GVKVTVV--SADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPA 74 (271)
T ss_pred eEEEecc-cCCHHHHHHHHHHHHHHHHh-CC---CeEEEEc--cCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHH
Confidence 4555543 44566777777776644331 10 1112222 234445566444 444456899999876443334444
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
+ +.+++.+.|...+...
T Consensus 75 i-~~~~~~~ipvv~~~~~ 91 (271)
T cd06321 75 V-KRAQAAGIVVVAVDVA 91 (271)
T ss_pred H-HHHHHCCCeEEEecCC
Confidence 4 4455778899989764
No 151
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=40.33 E-value=2e+02 Score=26.40 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=31.6
Q ss_pred HHH-HHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 269 ERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 269 ~RQ-~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++| +.++.+...++|.+|+.+.- +.-...+++.+++.+.|...+.+.
T Consensus 41 ~~~~~~i~~~~~~~~dgiii~~~~-~~~~~~~~~~~~~~~iPvV~~~~~ 88 (289)
T cd01540 41 EKVLSAIDNLGAQGAKGFVICVPD-VKLGPAIVAKAKAYNMKVVAVDDR 88 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCc-hhhhHHHHHHHHhCCCeEEEecCC
Confidence 444 45555555679999998753 333355666777889999888753
No 152
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=40.28 E-value=2.2e+02 Score=28.16 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=54.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCch-
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN- 295 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSN- 295 (361)
.+|+++.+++-. .-|.++.+-+++... .++ -++.+.. --..+...| +.++.|.++.+|+++|.+ ++++
T Consensus 24 ~~i~~v~k~~~~-pf~~~~~~Gi~~aa~-~~G-----~~v~~~~-~~~~d~~~q~~~i~~li~~~vdgIiv~~--~d~~a 93 (336)
T PRK15408 24 ERIAFIPKLVGV-GFFTSGGNGAKEAGK-ELG-----VDVTYDG-PTEPSVSGQVQLINNFVNQGYNAIIVSA--VSPDG 93 (336)
T ss_pred cEEEEEECCCCC-HHHHHHHHHHHHHHH-HhC-----CEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCHHH
Confidence 589999987755 347777776665432 222 1222211 112344556 455566557899999973 3444
Q ss_pred hHHHHHHHHhcCCCeEEeCCCC
Q 018062 296 TSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~ 317 (361)
.....+-+++.|.|...+++..
T Consensus 94 l~~~l~~a~~~gIpVV~~d~~~ 115 (336)
T PRK15408 94 LCPALKRAMQRGVKVLTWDSDT 115 (336)
T ss_pred HHHHHHHHHHCCCeEEEeCCCC
Confidence 2455566778899999888753
No 153
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=40.16 E-value=2.5e+02 Score=25.69 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=46.4
Q ss_pred eEEEEEcC-CCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 219 KVGIANQT-TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 219 kv~vvsQT-T~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
||+++.-. +++..-|..+.+-+.+...+ .+ -++.+.++- . .++| +.++.|.+..+|.+|+++.. .+
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~-~g-----y~~~~~~~~-~--~~~~~~~~~~l~~~~vdgiii~~~~---~~ 68 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKE-LG-----VEVKYVESV-E--DADYEPNLRQLAAQGYDLIFGVGFG---FM 68 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHh-cC-----ceEEEEecC-C--HHHHHHHHHHHHHcCCCEEEECCcc---hh
Confidence 35555442 45566677777777664322 11 123333322 2 2344 34455555679999997522 23
Q ss_pred HHHHHHHHhc-CCCeEEeCCC
Q 018062 297 SHLQEIAEDR-GIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~-~~~t~~Ie~~ 316 (361)
..+.+..++. +.|...+++.
T Consensus 69 ~~~~~~~~~~~~ipvv~~~~~ 89 (260)
T cd06304 69 DAVEKVAKEYPDVKFAIIDGV 89 (260)
T ss_pred HHHHHHHHHCCCCEEEEecCc
Confidence 4555665443 5677778764
No 154
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=40.01 E-value=3.4e+02 Score=25.84 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=44.8
Q ss_pred HHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCC-CeEEeCCCCCCCCCCccccccccceeEEEeeecce---EEEe
Q 018062 272 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGI-PSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINR---VIFK 347 (361)
Q Consensus 272 ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~-~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 347 (361)
..+.+|.+...|++++.+.. ..+..++.-+++.|. +.++|-...-..+.+......-..++.+|++.... -.-.
T Consensus 208 ~~l~~l~~~~~~vvv~~~~~--~~~~~~~~~a~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 285 (348)
T cd06350 208 RILKKLKSSTARVIVVFGDE--DDALRLFCEAYKLGMTGKYWIISTDWDTSTCLLLFTLDAFQGVLGFSGHAPRSGEIPG 285 (348)
T ss_pred HHHHHHHhCCCcEEEEEeCc--HHHHHHHHHHHHhCCCCeEEEEEccccCccccccCCcceeeeEEEEEEEeecCCcCCC
Confidence 45555644456888887764 678899999999986 55655332222221222222223455666655432 2345
Q ss_pred ehhhhh
Q 018062 348 FQSFFI 353 (361)
Q Consensus 348 ~~~~~~ 353 (361)
|+.||-
T Consensus 286 f~~~~~ 291 (348)
T cd06350 286 FKDFLR 291 (348)
T ss_pred hHHHHH
Confidence 666553
No 155
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=40.00 E-value=76 Score=29.12 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=42.1
Q ss_pred ccccHHHH-HHHHHHHHchhcCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 261 NTICDATQ-ERQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 261 nTIC~AT~-~RQ~A~~eLa~~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
|..++++. .||-+. ++ .+-|++|+|-. -+|.|+...++.|++.|.++..|.+..+
T Consensus 93 ~d~~~~~~~~~~~~~--~~-~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 93 NDFGYDYVFSRYVEA--VG-REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred ccCCHHHHHHHHHHH--hC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 55566554 455443 54 57899998876 4788999999999999999999988743
No 156
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=39.88 E-value=95 Score=27.77 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhCC--CCceEEecccccCHHHHHHHHHcCcEEec
Q 018062 39 VERAVQIAYEARKQFP--EEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 39 V~RAI~~a~~~~~~~~--~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
+++-|..+.+++++.. ..+.|..----.|+.+++.|++.|..++.
T Consensus 79 ~~~ei~~~~~~l~~~~g~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 125 (191)
T TIGR02764 79 IKKDILRAQEIIEKLTGKKPTLFRPPSGAFNKAVLKAAESLGYTVVH 125 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEECCCcCCCHHHHHHHHHcCCeEEE
Confidence 4444555555554421 12456555556899999999999999875
No 157
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=39.67 E-value=2.8e+02 Score=26.40 Aligned_cols=89 Identities=16% Similarity=0.286 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++... ++-.-|..+.+-+.+...+. + -.+.+. .|....++|. .+..|....+|.+|+.+... ..
T Consensus 65 ~~Igvv~~~-~~~~~~~~i~~gi~~~a~~~-g-----~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~ 133 (342)
T PRK10014 65 GVIGLIVRD-LSAPFYAELTAGLTEALEAQ-G-----RMVFLL--QGGKDGEQLAQRFSTLLNQGVDGVVIAGAAG--SS 133 (342)
T ss_pred CEEEEEeCC-CccchHHHHHHHHHHHHHHc-C-----CEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC--Cc
Confidence 468888754 44455777776666543222 1 112222 2233445554 34455556899999998643 23
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
..+.+.+++.+.|..+++...
T Consensus 134 ~~~~~~l~~~~iPvV~~~~~~ 154 (342)
T PRK10014 134 DDLREMAEEKGIPVVFASRAS 154 (342)
T ss_pred HHHHHHHhhcCCCEEEEecCC
Confidence 456666778889999997643
No 158
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=39.66 E-value=45 Score=32.34 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=42.5
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
++.+.||-|.+..-+| ++++|. .+-++..|+|+..|+-+.- .+++++.+.|.+..-+.+
T Consensus 46 el~~~D~~~~p~~a~~-~~~~li-~~~~v~~iiG~~~s~~~~~-~~~~~~~~ip~i~~~~~~ 104 (347)
T cd06336 46 EIVSYDDKYDPAEAAA-NARRLV-QQDGVKFILGPIGGGITAA-QQITERNKVLLLTAYSSD 104 (347)
T ss_pred EEEEecCCCCHHHHHH-HHHHHH-hhcCceEEEeCCCCchhhh-hhhhhhcCceEEeccCCc
Confidence 4668899998877764 556665 3335667788888887777 899999887776555443
No 159
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=39.65 E-value=1.3e+02 Score=26.97 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=40.7
Q ss_pred CCceEEecccccCHHHHHHHHHcCcEEecCCcc--cc----cccc--ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 018062 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG--KK----QFDV--VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (361)
Q Consensus 55 ~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~--~~----~l~e--l~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDA 125 (361)
+.++|+.|+= .-+.|++.|+...-..+. .+ .+.. ......++.|+-+..+...+.|++.|..++-.
T Consensus 78 ~~~~~avG~~-----Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~ 151 (239)
T cd06578 78 GLKIAAVGPK-----TAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEV 151 (239)
T ss_pred CCEEEEECHH-----HHHHHHHcCCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEE
Confidence 4579988865 447899999876542111 00 1111 22233455666666688899999999887543
No 160
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=39.58 E-value=68 Score=30.80 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHchhcCCcEEEEEcCC-CCchhHHHHHHHHhcCCCeEEe
Q 018062 266 ATQERQDAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 266 AT~~RQ~A~~eLa~~~vD~miVIGGk-nSSNT~kL~eia~~~~~~t~~I 313 (361)
.+.+=+.++..|. +++|++++..+. -.++...+...+.+.+.|.|-.
T Consensus 170 ~~~~~~~~~~~l~-~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~ 217 (294)
T PF04392_consen 170 SSEDLEQALEALA-EKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGS 217 (294)
T ss_dssp SGGGHHHHHHHHC-TT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEES
T ss_pred cHhHHHHHHHHhh-ccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEEC
Confidence 3455567888886 789999887652 2344556888888888888754
No 161
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=39.24 E-value=67 Score=29.48 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=31.6
Q ss_pred hcCCcEEeCcChhhH--HHHHHHHHHhhCCCeEEEE-ecCCCceeeee
Q 018062 117 NKNVQIVDTTCPWVS--KVWTSVEKHKKGDYTSIIH-GKYSHEETVAT 161 (361)
Q Consensus 117 ~kgl~ViDATCP~V~--kv~~~v~~~~~~Gy~IIIi-G~~~HpEV~gi 161 (361)
..++-++++++||+. -+.+.+..+...++.+++. |.++||-..|.
T Consensus 88 ~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~g~Pv~~~~ 135 (233)
T cd02518 88 ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYPDGLDV 135 (233)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCCCCCCCCceEE
Confidence 356788999999997 4556666666666666664 45789885553
No 162
>PLN02564 6-phosphofructokinase
Probab=39.07 E-value=54 Score=34.98 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=41.6
Q ss_pred HHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
.+++++..|.+..+|.++||||-.|-.+. +|++-+++.|.+.-.|.=+.-||.+
T Consensus 164 ~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDND 218 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDND 218 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCC
Confidence 67777877766689999999999998665 8888888888774445556656555
No 163
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=38.69 E-value=2.4e+02 Score=26.63 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=49.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++. .+++..-|..+.+-|.+..... . .+-.+.+.++ .....+|.+ +..|...++|.+|+.+. ++.....
T Consensus 2 Igviv-~~~~~~~~~~~~~gi~~~a~~~-~---~g~~~~~~~~--~~~~~~q~~~i~~l~~~~vdgiii~~~-~~~~~~~ 73 (303)
T cd01539 2 IGVFL-YKFDDTFISLVRKNLEDIQKEN-G---GKVEFTFYDA--KNNQSTQNEQIDTALAKGVDLLAVNLV-DPTAAQT 73 (303)
T ss_pred eEEEe-eCCCChHHHHHHHHHHHHHHhh-C---CCeeEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEecC-chhhHHH
Confidence 44443 2345555677776666543221 0 0112223332 345567755 44555578999998764 3333345
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
.++.+++.|.|...+++.
T Consensus 74 ~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 74 VINKAKQKNIPVIFFNRE 91 (303)
T ss_pred HHHHHHHCCCCEEEeCCC
Confidence 556677888999888764
No 164
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=38.64 E-value=41 Score=33.03 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=40.4
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
++.+.||-+..+.-. .++++|. .+=++..|+|+..|+++..+..++.+.+.+.+
T Consensus 42 elv~~D~~~~p~~a~-~~a~~li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~~~~~ 95 (360)
T cd06357 42 EPVEYDPGGDPDAYR-ALAERLL-REDGVRVIFGCYTSSSRKAVLPVVERHDALLW 95 (360)
T ss_pred EEEEECCCCCHHHHH-HHHHHHH-hhCCCcEEEeCccHHHHHHHHHHHHhcCceEE
Confidence 567889999887776 5566776 33445556799999999999999988875444
No 165
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=38.62 E-value=52 Score=28.69 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=27.9
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhC
Q 018062 96 KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (361)
Q Consensus 96 ~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~ 143 (361)
+++.+||+|||+|....+ + --|+...+...++...+.
T Consensus 17 ~~~~llfsaHgiP~~~~~----~-------gd~Y~~~~~~~~~~v~~~ 53 (135)
T cd00419 17 EKDRLLFSAHGLPVRDIK----K-------GDPYPDQCEETARLVAER 53 (135)
T ss_pred CCCEEEEEcCCCHHHHhh----C-------CCCHHHHHHHHHHHHHHH
Confidence 356799999999987665 2 247888888888877654
No 166
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=38.62 E-value=2.8e+02 Score=25.69 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhc-
Q 018062 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR- 306 (361)
Q Consensus 228 ~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~- 306 (361)
.+-.-|.++.+-+.+...+. + -++.+.++- +. ...++.++.|...++|.+|+.+.. ++..+.+..+..
T Consensus 12 ~~~~f~~~~~~gi~~~~~~~-g-----y~~~i~~~~-~~-~~~~~~i~~l~~~~vdgiI~~~~~---~~~~~~~~~~~~~ 80 (265)
T cd06354 12 GDKSFNQSAWEGLERAAKEL-G-----IEYKYVESK-SD-ADYEPNLEQLADAGYDLIVGVGFL---LADALKEVAKQYP 80 (265)
T ss_pred CchhHHHHHHHHHHHHHHHc-C-----CeEEEEecC-CH-HHHHHHHHHHHhCCCCEEEEcCcc---hHHHHHHHHHHCC
Confidence 44566777777776643322 1 123333322 22 334566777776799999998743 233455565554
Q ss_pred CCCeEEeCCC
Q 018062 307 GIPSYWIDSE 316 (361)
Q Consensus 307 ~~~t~~Ie~~ 316 (361)
+.|...+++.
T Consensus 81 ~~PiV~i~~~ 90 (265)
T cd06354 81 DQKFAIIDAV 90 (265)
T ss_pred CCEEEEEecc
Confidence 6788888764
No 167
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=38.38 E-value=29 Score=25.25 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=20.6
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCC
Q 018062 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 105 (361)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAH 105 (361)
.++.|+++|+.++.. ++|..+|.|+|
T Consensus 20 Q~~~L~~~Gi~~~~~----------~~G~p~V~r~~ 45 (47)
T PF13986_consen 20 QIRWLRRNGIPFVVR----------ADGRPIVTRSH 45 (47)
T ss_pred HHHHHHHCCCeeEEC----------CCCCEEeeHHH
Confidence 468999999999975 35777788776
No 168
>PRK02287 hypothetical protein; Provisional
Probab=38.18 E-value=71 Score=29.57 Aligned_cols=49 Identities=12% Similarity=0.331 Sum_probs=36.0
Q ss_pred HHHHHcCcEEecCCccccccccccCCCEEEEcCCC---CCHHHHHHHHhcCCcEEeCc
Q 018062 72 KRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG---AAVEEMVTLNNKNVQIVDTT 126 (361)
Q Consensus 72 ~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHG---v~~~v~~~l~~kgl~ViDAT 126 (361)
.+|.+.|....-.. ....|.| .||+..+| +||+..+..++.|+.|||++
T Consensus 20 ~KL~r~g~~~~~~~-----~~~~~~g-~IvL~P~a~~~lSp~D~~~~~~~Gi~vlDcS 71 (171)
T PRK02287 20 RKLVRFGLARLVRS-----IRKIPRG-SIVLNPFAEKALSPADRDIVEKRGIVALDCS 71 (171)
T ss_pred HHHHhCCceeEecc-----cccCCCC-eEEECCCCCcCcCHHHHHhhhhCCEEEEECC
Confidence 57888887654321 2333444 47788776 57999999999999999998
No 169
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=38.12 E-value=51 Score=32.71 Aligned_cols=54 Identities=28% Similarity=0.380 Sum_probs=42.5
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
++.+.||-..+..-+ +++++|. .+ ++..|||+..|+.+.-+.+++.+.+.|.+.
T Consensus 68 elv~~D~~~~p~~a~-~~~~~Li-~~-~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 121 (369)
T PRK15404 68 EGVEYDDACDPKQAV-AVANKVV-ND-GIKYVIGHLCSSSTQPASDIYEDEGILMIT 121 (369)
T ss_pred EEEeecCCCCHHHHH-HHHHHHH-hC-CceEEEcCCCchhHHHhHHHHHHCCCeEEe
Confidence 566788888776655 4667887 33 677788999999999999999999877654
No 170
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=38.07 E-value=9.1 Score=37.12 Aligned_cols=32 Identities=34% Similarity=0.738 Sum_probs=24.2
Q ss_pred hhHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHH
Q 018062 7 SDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIA 46 (361)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a 46 (361)
+.+++.||+.|-....|. .|||||-+++|+.-
T Consensus 107 ~~v~k~lk~~g~~kkIGv--------~GfCwGak~vv~~~ 138 (242)
T KOG3043|consen 107 TAVVKWLKNHGDSKKIGV--------VGFCWGAKVVVTLS 138 (242)
T ss_pred HHHHHHHHHcCCcceeeE--------EEEeecceEEEEee
Confidence 567888887776666553 59999999888764
No 171
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=38.02 E-value=76 Score=28.56 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=49.1
Q ss_pred CceEEecccccCH-----HHHHHHHHcCcEEecCCcc-----------ccccccccCC-CEE-EEcCCCCCHHHHHHHHh
Q 018062 56 EKIWITNEIIHNP-----TVNKRLEEMAVQNIPVEEG-----------KKQFDVVNKG-DVV-VLPAFGAAVEEMVTLNN 117 (361)
Q Consensus 56 ~~Vy~lG~iIHN~-----~Vv~~L~~~GV~~v~~~~~-----------~~~l~el~~g-~~V-IIrAHGv~~~v~~~l~~ 117 (361)
+.|.+.| +-+|| .|.+.|.++|-+++.-.++ ..+|+|+|+. |+| |||.--.-|++.+++-+
T Consensus 17 K~IAvVG-~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~~i~~eal~ 95 (140)
T COG1832 17 KTIAVVG-ASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAAPEVAREALE 95 (140)
T ss_pred ceEEEEe-cCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhhHHHHHHHHh
Confidence 4577766 45665 5889999999888875442 1377888753 444 89998888888888888
Q ss_pred cCCcEE
Q 018062 118 KNVQIV 123 (361)
Q Consensus 118 kgl~Vi 123 (361)
+|.+++
T Consensus 96 ~~~kv~ 101 (140)
T COG1832 96 KGAKVV 101 (140)
T ss_pred hCCCeE
Confidence 886665
No 172
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=37.88 E-value=2.7e+02 Score=25.44 Aligned_cols=86 Identities=15% Similarity=0.034 Sum_probs=46.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++.-. +-.-|.++..-+.+...+ .+ -++.+..+ -+...++|.. ++.|.+..+|.+|+.+...++....
T Consensus 2 i~~v~~~--~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~-~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~ 72 (271)
T cd06314 2 IAVVTNG--ASPFWKIAEAGVKAAGKE-LG-----VDVEFVVP-QQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPA 72 (271)
T ss_pred eEEEcCC--CcHHHHHHHHHHHHHHHH-cC-----CeEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHH
Confidence 5666632 345577777777654322 21 12222211 0123455544 4445456899999986443222334
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
|.++ .+ +.|...+++.
T Consensus 73 l~~~-~~-~ipvV~~~~~ 88 (271)
T cd06314 73 LNKA-AA-GIKLITTDSD 88 (271)
T ss_pred HHHH-hc-CCCEEEecCC
Confidence 4444 45 8899999764
No 173
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=37.61 E-value=42 Score=32.92 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=39.4
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIP 309 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~ 309 (361)
++.+.||-|.++.-. +++++|. .+=.+.+|+|+..|+.+..+..++.+.+.+
T Consensus 43 ~l~~~Dd~~~p~~a~-~~a~~Lv-~~~~V~~iiG~~~S~~~~a~~~~~~~~~~~ 94 (359)
T TIGR03407 43 EPVVEDGASDWPTFA-EKARKLI-TQDKVAAVFGCWTSASRKAVLPVFEENNGL 94 (359)
T ss_pred EEEEeCCCCCHHHHH-HHHHHHH-hhCCCcEEEcCCcHHHHHHHHHHHhccCCc
Confidence 567889999887766 5566675 233456678999999999999999887644
No 174
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=37.42 E-value=42 Score=27.22 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=32.4
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 280 ~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
+++-++|+-.+-..+-.++|.+.|+..+.|.++..|-.||-
T Consensus 23 gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~eLG 63 (82)
T PRK13601 23 CNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELG 63 (82)
T ss_pred CCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHHHH
Confidence 56777777777665555689999999999999898887764
No 175
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=37.29 E-value=1.4e+02 Score=29.94 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHch-h---cCCcEEEEEcCCCC
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV-E---EKVDLILVVGGWNS 293 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa-~---~~vD~miVIGGknS 293 (361)
+++.+|+..+....-.+.+.+.|+.. +.+ ...+.+.+.-++.|.+-=+.+.+.+ + .+.|++|.|||=..
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~-----gi~--~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 104 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAA-----GFE--VDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVI 104 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhc-----CCc--eEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHH
Confidence 47888888777555555555555431 100 0011123444544544433333322 1 13499999999999
Q ss_pred chhHHHHHHHHhcCCCeEEeCCC
Q 018062 294 SNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 294 SNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
-.+.|.+...-..+.|-+.|-|-
T Consensus 105 ~D~aK~iA~~~~~gip~i~IPTT 127 (358)
T PRK00002 105 GDLAGFAAATYMRGIRFIQVPTT 127 (358)
T ss_pred HHHHHHHHHHhcCCCCEEEcCch
Confidence 99999887655678888888874
No 176
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=37.26 E-value=1.4e+02 Score=24.85 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCcccccccc------cc------CCCEEEEcCCCCCHH
Q 018062 43 VQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV------VN------KGDVVVLPAFGAAVE 110 (361)
Q Consensus 43 I~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~e------l~------~g~~VIIrAHGv~~~ 110 (361)
++.+.+.++ . ..-|+.+|+|+...++++.|++..+.+|.+.-+...+.+ ++ -+..-++=.||-+..
T Consensus 16 ~~~~~~~~~-~-~d~vi~~GDi~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~i~~~H~~~~~ 93 (156)
T PF12850_consen 16 LEAVLEYIN-E-PDFVIILGDIFDPEEVLELLRDIPVYVVRGNHDNWAFPNENDEEYLLDALRLTIDGFKILLSHGHPYD 93 (156)
T ss_dssp HHHHHHHHT-T-ESEEEEES-SCSHHHHHHHHHHHEEEEE--CCHSTHHHSEECTCSSHSEEEEEETTEEEEEESSTSSS
T ss_pred HHHHHHHhc-C-CCEEEECCCchhHHHHHHHHhcCCEEEEeCCcccccchhhhhccccccceeeeecCCeEEEECCCCcc
Confidence 444444443 2 346999999999999999998887878775321100000 00 022334555654322
Q ss_pred HHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeee
Q 018062 111 EMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (361)
Q Consensus 111 v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~g 160 (361)
+. .........+...++..++.|+...|.+.-
T Consensus 94 -----------------~~-~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 125 (156)
T PF12850_consen 94 -----------------VQ-WDPAELREILSRENVDLVLHGHTHRPQVFK 125 (156)
T ss_dssp -----------------ST-TTHHHHHHHHHHTTSSEEEESSSSSEEEEE
T ss_pred -----------------cc-cChhhhhhhhcccCCCEEEcCCcccceEEE
Confidence 10 112223356668899999999999888864
No 177
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=37.04 E-value=53 Score=28.08 Aligned_cols=56 Identities=16% Similarity=0.363 Sum_probs=39.4
Q ss_pred cCCcEEEEEcCCCCchh-HHHHHHHHhcCCCeEEeCCCCCCCCCCccccccc-cceeEEEeee
Q 018062 280 EKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLM-VCVNILNFTC 340 (361)
Q Consensus 280 ~~vD~miVIGGknSSNT-~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~-~~~~~~~~~~ 340 (361)
+++-++|+-++-...++ .++-..|+..+.|-+++.|-+||-.. .-. .+...++||-
T Consensus 41 gka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~a-----~Gk~~~~svvaI~d 98 (117)
T TIGR03677 41 GIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGAA-----AGLEVGAASAAIVD 98 (117)
T ss_pred CCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHHH-----hCCCCCeEEEEEEc
Confidence 56777777666665555 89999999999998888888776443 112 3566677764
No 178
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.87 E-value=2.2e+02 Score=26.96 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchhc--CCcEEEEEcCCCCchhHHHHHHHHhc
Q 018062 230 KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEE--KVDLILVVGGWNSSNTSHLQEIAEDR 306 (361)
Q Consensus 230 ~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~~--~vD~miVIGGknSSNT~kL~eia~~~ 306 (361)
-.-|..+...+++..... + -.+.+. -+....++|.+ ++.+.+. .+|.+|+.++.. ...++.+.+++.
T Consensus 12 ~~~~~~~~~gi~~~~~~~-g-----~~v~~~--~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~--~~~~~~~~~~~~ 81 (305)
T cd06324 12 EPFWNSVARFMQAAADDL-G-----IELEVL--YAERDRFLMLQQARTILQRPDKPDALIFTNEKS--VAPELLRLAEGA 81 (305)
T ss_pred CcHHHHHHHHHHHHHHhc-C-----CeEEEE--eCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc--chHHHHHHHHhC
Confidence 344666766666543221 1 112222 23345566644 4455445 799999976432 344556677788
Q ss_pred CCCeEEeCCC
Q 018062 307 GIPSYWIDSE 316 (361)
Q Consensus 307 ~~~t~~Ie~~ 316 (361)
|.|...+.+.
T Consensus 82 giPvV~~~~~ 91 (305)
T cd06324 82 GVKLFLVNSG 91 (305)
T ss_pred CCeEEEEecC
Confidence 9999988764
No 179
>PRK09701 D-allose transporter subunit; Provisional
Probab=36.72 E-value=2.8e+02 Score=26.41 Aligned_cols=91 Identities=11% Similarity=0.033 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.-+ ++-.-|..+.+-+.+.... .+ -.+.+.++-+..-.++|.+ ++.+.+..+|.+|+.+...+.+.
T Consensus 25 ~~Igvi~~~-~~~~f~~~~~~gi~~~a~~-~g-----~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~ 97 (311)
T PRK09701 25 AEYAVVLKT-LSNPFWVDMKKGIEDEAKT-LG-----VSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 97 (311)
T ss_pred CeEEEEeCC-CCCHHHHHHHHHHHHHHHH-cC-----CeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 478888755 4455677777777664322 11 1233333333344456644 44554567999999986544454
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
..+.++ .+.+.|...+.+.
T Consensus 98 ~~l~~~-~~~giPvV~~~~~ 116 (311)
T PRK09701 98 MPVARA-WKKGIYLVNLDEK 116 (311)
T ss_pred HHHHHH-HHCCCcEEEeCCC
Confidence 555444 5678899888865
No 180
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=36.66 E-value=38 Score=32.05 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=42.1
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
-++.+.|+-..++.- ++++++|. .+-.+.+|+|+-.|..+..+.+.+.+.+.|.+.
T Consensus 43 i~l~~~D~~~~~~~a-~~~~~~l~-~~~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~ 98 (343)
T PF13458_consen 43 IELVVYDDGGDPAQA-VQAARKLI-DDDGVDAVVGPLSSAQAEAVAPIAEEAGIPYIS 98 (343)
T ss_dssp EEEEEEE-TT-HHHH-HHHHHHHH-HTSTESEEEESSSHHHHHHHHHHHHHHT-EEEE
T ss_pred ceeeeccCCCChHHH-HHHHHHhh-hhcCcEEEEecCCcHHHHHHHHHHHhcCcEEEE
Confidence 356678888877766 46677776 446677889999999999999999999887766
No 181
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=36.64 E-value=46 Score=32.87 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=45.1
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe-CCCCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI-DSEKRIG 320 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I-e~~~eL~ 320 (361)
++.+.||-|....--+.+.+-+. +-.+..|||+..|+-+.-...+|...+.|-+-- .+..+|.
T Consensus 43 ~~~~~D~~~~~~~a~~~~~~l~~--~~~v~aiiGp~~S~~~~av~~va~~~~iP~is~~s~s~~ls 106 (391)
T cd06372 43 EFTYTNSTCSAKESLAGFIDQVQ--KEHISALFGPACPEAAEVTGLLASQWNIPMFGFVGQTAKLD 106 (391)
T ss_pred EEEEecCCCCccHHHHHHHHHHH--hcCceEEECCCCCcHHHHHHHHHhccCccEEEeecCCcccc
Confidence 45578999988766655555443 234667899999999999999999999885432 2344454
No 182
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=36.43 E-value=1.1e+02 Score=28.84 Aligned_cols=97 Identities=8% Similarity=-0.034 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhCC-CCceE--EecccccCHHHHHHHHHcCcEEecCC-cc---ccccccccCCCEEEEcCCCCCHHH---
Q 018062 42 AVQIAYEARKQFP-EEKIW--ITNEIIHNPTVNKRLEEMAVQNIPVE-EG---KKQFDVVNKGDVVVLPAFGAAVEE--- 111 (361)
Q Consensus 42 AI~~a~~~~~~~~-~~~Vy--~lG~iIHN~~Vv~~L~~~GV~~v~~~-~~---~~~l~el~~g~~VIIrAHGv~~~v--- 111 (361)
.++.....++..+ +-++. .-++=-.++.+.+.|++.|+..|-.. ++ .....+...++.+.+|-||-+...
T Consensus 103 ~~~~l~~~l~~~~~~~~~avE~R~~sW~~~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~ 182 (230)
T PF01904_consen 103 NLERLDAFLDRLPRGFRYAVEFRHPSWFTEEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYD 182 (230)
T ss_dssp HHHHHHHHHHHTT-TS-EEEE--BGGGGCHHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB
T ss_pred HHHHHHHHHhhcccccceEEecCCcchhhHHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCccccccc
Confidence 3444445555443 22222 33433338999999999999977431 11 111111112478999999998752
Q ss_pred --HHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEe
Q 018062 112 --MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (361)
Q Consensus 112 --~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG 151 (361)
|.. +--...-+.++++.++|..|.++=
T Consensus 183 ~~Ys~-------------~eL~~~a~~i~~~~~~~~~v~v~f 211 (230)
T PF01904_consen 183 YRYSD-------------EELEEWAERIRAWAAQGKEVYVFF 211 (230)
T ss_dssp ----H-------------HHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred ccCCH-------------HHHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 233456667777878887776654
No 183
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.35 E-value=67 Score=30.25 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=41.3
Q ss_pred cccccccccHHHHHHHHHHHHchhc-CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~-~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
++.+.|+-|.+.... +++++|... .||+ |||+..|+-+..+.+++++.+.|.+....
T Consensus 42 ~~~~~D~~~~~~~~~-~~~~~li~~~~v~a--iiG~~~s~~~~~v~~~~~~~~ip~i~~~~ 99 (334)
T cd06347 42 ELVVEDNKSDKEEAA-NAATRLIDQDKVVA--IIGPVTSGATLAAGPIAEDAKVPMITPSA 99 (334)
T ss_pred EEEEecCCCChHHHH-HHHHHHhcccCeEE--EEcCCccHhHHHhHHHHHHCCCeEEcCCC
Confidence 466789988877665 455666533 4555 57888888888999999999888765443
No 184
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=36.30 E-value=1.2e+02 Score=29.52 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=35.4
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEe
Q 018062 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (361)
Q Consensus 100 VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG 151 (361)
=++||+ +|..+.++|++|.-..+|+. ++.-.++.++||+=|||-
T Consensus 37 dvfrAf-TS~kIIkkLK~rdgi~~dTP-------~~aL~klk~~gy~eviiQ 80 (265)
T COG4822 37 DVFRAF-TSRKIIKKLKERDGIDFDTP-------IQALNKLKDQGYEEVIIQ 80 (265)
T ss_pred HHHHHH-hHHHHHHHHHhhcCcccCCH-------HHHHHHHHHccchheeee
Confidence 357887 57789999999988889986 455577889999988764
No 185
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.25 E-value=2e+02 Score=29.12 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=61.3
Q ss_pred eEEEEeCCCCCccc---HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEE
Q 018062 25 VKVKLAESYGFCWG---VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV 101 (361)
Q Consensus 25 mkI~lA~~~GFC~G---V~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VI 101 (361)
|+|.+-.-.|.-.| |.|-..+|.+..+.. -.-+|.-++.+-+ ++-. ...|..+..-. +.+++.+. +.|.||
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~-~~~~fl~k~~~e~--~~~~-~~~~f~~~~~~-~~n~ik~~-k~d~lI 74 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRG-FACLFLTKQDIEA--IIHK-VYEGFKVLEGR-GNNLIKEE-KFDLLI 74 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcC-ceEEEecccchhh--hhhh-hhhhccceeee-cccccccc-cCCEEE
Confidence 56655444555554 899999998877642 2346665554433 1112 22233332210 11123333 368999
Q ss_pred EcCCCCCHHHHHHHH-hcCCc--EEeCcChhhHH
Q 018062 102 LPAFGAAVEEMVTLN-NKNVQ--IVDTTCPWVSK 132 (361)
Q Consensus 102 IrAHGv~~~v~~~l~-~kgl~--ViDATCP~V~k 132 (361)
|-+-|++.+..+.++ +.|.+ ++|.-|+.--+
T Consensus 75 ~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~ 108 (318)
T COG3980 75 FDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK 108 (318)
T ss_pred EeccCCCHHHHHHHHHHhCCcEEEecCCCccchh
Confidence 999999999999998 55555 48999986544
No 186
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=36.06 E-value=96 Score=27.15 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=32.9
Q ss_pred cCCcEEEEEcCC-CCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGGk-nSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|+|... +|.++...++.|++.|.++..|.+..+
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 568999999864 678888999999999999999988543
No 187
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.94 E-value=2.1e+02 Score=25.93 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=30.8
Q ss_pred HHH-HHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 269 ERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 269 ~RQ-~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
+.| +.++.|.++.+|.+|+.+...++ ..++.+++.+.|...+++.
T Consensus 42 ~~~~~~i~~l~~~~~dgiii~~~~~~~---~~~~~~~~~~ipvV~i~~~ 87 (270)
T cd06296 42 SPERQWVERLSARRTDGVILVTPELTS---AQRAALRRTGIPFVVVDPA 87 (270)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCh---HHHHHHhcCCCCEEEEecc
Confidence 444 45566655789999998764333 2355667788999999864
No 188
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=35.93 E-value=65 Score=30.83 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=39.5
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCC-CCchhHHHHHHHHhcCCCeEEeCC
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGk-nSSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
..+..|+.-=+ ....+++.+.+ .++|++||||-. ...-...|...|+..|.+.+.|..
T Consensus 155 P~Vv~FgE~~p-~~~~~~~~~~~--~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~ 213 (244)
T PRK14138 155 PNIVFFGEALP-QDALREAIRLS--SKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNL 213 (244)
T ss_pred CCEEECCCcCC-HHHHHHHHHHH--hcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcC
Confidence 34556666322 22344555555 479999999985 335567888999999988887765
No 189
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=35.58 E-value=69 Score=24.60 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCe-EEEEecCC
Q 018062 110 EEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (361)
Q Consensus 110 ~v~~~l~~kgl~V-iDATCP~V~kv~~~v~~~~~~Gy~-IIIiG~~~ 154 (361)
++.+.|+..|+.+ +|-.. .++.+..+...+.||. ++++|+..
T Consensus 22 ~~~~~Lr~~g~~v~~~~~~---~~~~k~~~~a~~~g~~~~iiig~~e 65 (94)
T cd00738 22 KLLNALLANGIRVLYDDRE---RKIGKKFREADLRGVPFAVVVGEDE 65 (94)
T ss_pred HHHHHHHHCCCEEEecCCC---cCHhHHHHHHHhCCCCEEEEECCCh
Confidence 3567788888877 55443 5777777887888965 77888643
No 190
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=35.38 E-value=3.9e+02 Score=26.08 Aligned_cols=72 Identities=21% Similarity=0.305 Sum_probs=41.8
Q ss_pred hHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEe--ccccc--------CHHHHHHHHHc
Q 018062 8 DIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWIT--NEIIH--------NPTVNKRLEEM 77 (361)
Q Consensus 8 ~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~l--G~iIH--------N~~Vv~~L~~~ 77 (361)
+|++.+++. ...|.-+|.+.....+-...++..++++...+..++-.+..+ +++.| .+++.++|++.
T Consensus 40 eI~~~~~~~---~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeA 116 (309)
T TIGR00423 40 EILEKVKEA---VAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKA 116 (309)
T ss_pred HHHHHHHHH---HHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 455555543 123445666665445556777777777776665432233323 33332 47788888888
Q ss_pred CcEEe
Q 018062 78 AVQNI 82 (361)
Q Consensus 78 GV~~v 82 (361)
|+..+
T Consensus 117 Gl~~i 121 (309)
T TIGR00423 117 GLDSM 121 (309)
T ss_pred CCCcC
Confidence 87655
No 191
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=35.29 E-value=51 Score=31.19 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 283 DLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 283 D~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
|.+++-||+.+.. +-+.++|++.|.+.+++|.=
T Consensus 1 d~v~~wg~~~~~~-~~~~~~a~~~~i~~~~~E~G 33 (269)
T PF05159_consen 1 DAVVVWGDKRPYH-RAAIEVAKELGIPVIFFEDG 33 (269)
T ss_pred CEEEEECCCccHH-HHHHHHHHHhCCCEEEEecC
Confidence 7889998866544 44578999999999999953
No 192
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=35.26 E-value=1.1e+02 Score=31.03 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=46.5
Q ss_pred cCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhh--------CCCCceEEecccccCH--HHHHHHHHcCcEEecC
Q 018062 16 NGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQ--------FPEEKIWITNEIIHNP--TVNKRLEEMAVQNIPV 84 (361)
Q Consensus 16 ~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~--------~~~~~Vy~lG~iIHN~--~Vv~~L~~~GV~~v~~ 84 (361)
.+.++..-.|- .--..+|+++....+++.++.+++ ..+.+|+..|+..=++ .+.+.+++.|..+|-+
T Consensus 188 ~p~pitg~e~~--~~~~~~~~~~~~e~~~~L~~~l~el~~~~~~~~~~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV~d 264 (380)
T TIGR02263 188 EPWKVPSADLY--LLLRAGLVIPVEEHNQMLADYLAAARKQEAPIKDNCRVIICGMFCEQPPLNLIKSIELSGCYIVDD 264 (380)
T ss_pred CCCCCCHHHHH--HHHHhhccCCHHHHHHHHHHHHHHHHhccccCCCCCEEEEECcCCCCchHHHHHHHHHCCCEEEEe
Confidence 34555533333 234567999999999887665541 1135899999776665 8889999999998853
No 193
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.13 E-value=3.5e+02 Score=24.55 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh--HHHHHHHHh
Q 018062 229 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT--SHLQEIAED 305 (361)
Q Consensus 229 s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT--~kL~eia~~ 305 (361)
...-|..+..-+.+...+. + -++.+.+ .+...++| +.++.|.+..+|.+|+.+...+..+ ...++-+.+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~ 81 (273)
T cd06292 10 SNPIFPAFAEAIEAALAQY-G-----YTVLLCN--TYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAE 81 (273)
T ss_pred cCchHHHHHHHHHHHHHHC-C-----CEEEEEe--CCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHh
Confidence 3445666666666543322 1 1222211 11233455 4456666678999999985433222 223344557
Q ss_pred cCCCeEEeCCC
Q 018062 306 RGIPSYWIDSE 316 (361)
Q Consensus 306 ~~~~t~~Ie~~ 316 (361)
.+.|...+.+.
T Consensus 82 ~~ipvV~i~~~ 92 (273)
T cd06292 82 RGLPVVLVNGR 92 (273)
T ss_pred CCCCEEEEcCC
Confidence 78999999864
No 194
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=35.09 E-value=1.5e+02 Score=28.64 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=43.2
Q ss_pred CCceEEecccccCHHHHHHHHHcCcEEec--CCccccccccc----cCCCE-EEEcCCCCCHHHHHHHHhcCCcEE
Q 018062 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEGKKQFDVV----NKGDV-VVLPAFGAAVEEMVTLNNKNVQIV 123 (361)
Q Consensus 55 ~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~--~~~~~~~l~el----~~g~~-VIIrAHGv~~~v~~~l~~kgl~Vi 123 (361)
+.++|+.|+ .--+.|++.|+..+- +....+.|-++ .+|.. +++|+.|-.+...+.|+++|..|.
T Consensus 95 ~~~~~AVG~-----~TA~aL~~~G~~~~~~P~~~~se~Ll~l~~~~~~g~~vLi~rg~~gr~~L~~~L~~~G~~V~ 165 (266)
T PRK08811 95 RAHWLSVGE-----GTARALQACGIDEVVRPTRMDSEGLLALPLAQAPLQAVGLITAPGGRGLLAPTLQQRGARIL 165 (266)
T ss_pred CCeEEEECH-----HHHHHHHHcCCCceeCCCCCCcHHHHhChhhhCCCCEEEEEeCCCcHHHHHHHHHHCCCEEe
Confidence 457999996 556889999986432 21111222222 13444 679999999999999999997773
No 195
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=35.03 E-value=1.1e+02 Score=30.74 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=47.8
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhcCcccccccccccccccH-HHHHHHH-HHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTICD-ATQERQD-AMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~-~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~-AT~~RQ~-A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|+...+... -++++.+.|++ . +.++.+|+.+|. .|.+-=. ++..+-+.++|++|-|||-.+-
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~-----~-----~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsvi 98 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEE-----A-----GLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPI 98 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHH-----c-----CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 57888877655432 35666666653 1 123445666653 3332222 2222223579999999999999
Q ss_pred hhHHHHHHHHhc
Q 018062 295 NTSHLQEIAEDR 306 (361)
Q Consensus 295 NT~kL~eia~~~ 306 (361)
.+.|..-+....
T Consensus 99 D~AK~ia~~~~~ 110 (377)
T cd08188 99 DCAKGIGIVASN 110 (377)
T ss_pred HHHHHHHHHHHC
Confidence 999987775443
No 196
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=34.96 E-value=2.4e+02 Score=26.05 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=25.4
Q ss_pred HHHHHHH-HHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 267 TQERQDA-MYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 267 T~~RQ~A-~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
..++|.. ++.|.+..+|.+|+.++.. ++...|.+ +.+.+.|...+
T Consensus 45 ~~~~~~~~i~~l~~~~vDgiIv~~~~~-~~~~~~~~-l~~~~~p~V~i 90 (280)
T cd06303 45 DHRLQSQQLNEALQSKPDYLIFTLDSL-RHRKLIER-VLASGKTKIIL 90 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCch-hhHHHHHH-HHhCCCCeEEE
Confidence 3456644 4455557899999987532 23344444 44555555445
No 197
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=34.92 E-value=3.5e+02 Score=24.56 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=48.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhc--CcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCch
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKF--GVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~--~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSN 295 (361)
||+++.. .++-.-|..+.+.+.+...+.. +- .-++.++++ .....+| +.++.+...++|.+|+.+.. +..
T Consensus 1 ~Ig~i~~-~~~~~~~~~~~~~i~~~~~~~~~~g~---~~~l~i~~~--~~~~~~~~~~~~~~~~~~vdgiIi~~~~-~~~ 73 (272)
T cd06300 1 KIGLSNS-YAGNTWRAQMLDEFKAQAKELKKAGL---ISEFIVTSA--DGDVAQQIADIRNLIAQGVDAIIINPAS-PTA 73 (272)
T ss_pred CeEEecc-ccCChHHHHHHHHHHHHHHhhhccCC---eeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hhh
Confidence 3555553 2344556667766655432220 10 001223322 2233444 44555555689999998743 222
Q ss_pred hHHHHHHHHhcCCCeEEeCCC
Q 018062 296 TSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~ 316 (361)
....++.+++.+.|...+.+.
T Consensus 74 ~~~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 74 LNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred hHHHHHHHHHCCCeEEEEecC
Confidence 344566777888898888754
No 198
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.91 E-value=1e+02 Score=30.25 Aligned_cols=71 Identities=21% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC--------cChhhHHHHHHHHH
Q 018062 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT--------TCPWVSKVWTSVEK 139 (361)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDA--------TCP~V~kv~~~v~~ 139 (361)
..+++.|+++|+-|+|+ | -.++-+++.+-++. |+..+++ |=-.|.|=-+.+.+
T Consensus 141 ~~~m~~Lk~r~l~flDs------------~----T~a~S~a~~iAk~~---gVp~~~rdvfLD~e~~~~~V~kql~~~~~ 201 (250)
T COG2861 141 EKLMEALKERGLYFLDS------------G----TIANSLAGKIAKEI---GVPVIKRDVFLDDEDTEAAVLKQLDAAEK 201 (250)
T ss_pred HHHHHHHHHCCeEEEcc------------c----ccccchhhhhHhhc---CCceeeeeeeecCcCCHHHHHHHHHHHHH
Q ss_pred HhhCCCeEEEEecCCCcee
Q 018062 140 HKKGDYTSIIHGKYSHEET 158 (361)
Q Consensus 140 ~~~~Gy~IIIiG~~~HpEV 158 (361)
++++.-+.|-||++ ||++
T Consensus 202 ~Ark~G~ai~IGh~-~~~T 219 (250)
T COG2861 202 LARKNGSAIGIGHP-HKNT 219 (250)
T ss_pred HHHhcCceEEecCC-chhH
No 199
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=34.81 E-value=69 Score=30.60 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=41.2
Q ss_pred cccccccccHHHHHHHHHHHHchhcC-------------CcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEK-------------VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~-------------vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
++.+.||-|....-. .++.+|. .+ -.+..|||+..|+.+..+.+++.+.+.|..--
T Consensus 53 ~l~~~D~~~~~~~a~-~~a~~li-~~~~~~~~~~~~~~~~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~ 121 (348)
T cd06350 53 GYHIYDSCCSPAVAL-RAALDLL-LSGEGTTPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQISY 121 (348)
T ss_pred eEEEEecCCcchHHH-HHHHHHH-hcCCCCCCCCcCCCCCceEEEECCCccHHHHHHHHHHhcCcCceecc
Confidence 556788888765444 4445554 34 57888999999999999999999988876543
No 200
>PRK14071 6-phosphofructokinase; Provisional
Probab=34.75 E-value=59 Score=33.12 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=31.5
Q ss_pred HHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
.++++++.|.+..+|.+++|||-.|-.+-+ ++++..+.+...|-
T Consensus 95 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~--~L~~~~~i~vIgiP 138 (360)
T PRK14071 95 RSQEIIDGYHSLGLDALIGIGGDGSLAILR--RLAQQGGINLVGIP 138 (360)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHHHH--HHHHhcCCcEEEec
Confidence 567777777667899999999999987653 23333466776663
No 201
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=34.75 E-value=65 Score=34.05 Aligned_cols=55 Identities=9% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
.++++.++.|.+..+|.+++|||-.|-.+. +|++-+++.|.+-=.|.=+.-||.+
T Consensus 163 ~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDND 218 (459)
T PTZ00286 163 FDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDND 218 (459)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 367777777766689999999999998776 7898888887443334445555555
No 202
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=34.73 E-value=69 Score=32.16 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=33.0
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
..|+++++.|-+-.+|.++||||-.|-.+-+. ++ +.+.+...|-
T Consensus 81 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~--L~-~~gi~vigiP 124 (324)
T TIGR02483 81 DGDDKIVANLKELGLDALIAIGGDGTLGIARR--LA-DKGLPVVGVP 124 (324)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHH--HH-hcCCCEEeec
Confidence 57888888887678999999999999876643 22 2466776663
No 203
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=34.62 E-value=1.7e+02 Score=27.25 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=16.5
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHHH
Q 018062 94 VNKGDVV-VLPAFGAAVEEMVTLN 116 (361)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~~~l~ 116 (361)
..+||.+ +|+.-|-++++.+.++
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~~ 130 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAVE 130 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHH
Confidence 3567875 5888899988866553
No 204
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=34.45 E-value=1.8e+02 Score=28.80 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhH
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~ 297 (361)
+++.+|.-.+....-++++.+.|++. . + . ..+ +...=+..+-+|- ++.+...++|++|-|||=..-.+.
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~-----~-~-~-~~~-~~~~~~~~~v~~~--~~~~~~~~~d~iIaiGGGs~~D~a 94 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDE-----G-E-V-DVV-IVEDATYEEVEKV--ESSARDIGADFVIGVGGGRVIDVA 94 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhc-----C-C-e-EEE-EeCCCCHHHHHHH--HHHhhhcCCCEEEEeCCchHHHHH
Confidence 57888887666554455555555431 1 0 0 011 1111233333332 222222479999999999999999
Q ss_pred HHHHHHHhcCCCeEEeCCCC
Q 018062 298 HLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~~ 317 (361)
|.+... .+.|-..|-|..
T Consensus 95 K~~a~~--~~~p~i~iPTT~ 112 (339)
T cd08173 95 KVAAYK--LGIPFISVPTAA 112 (339)
T ss_pred HHHHHh--cCCCEEEecCcc
Confidence 988643 567888887764
No 205
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=34.33 E-value=2.8e+02 Score=24.98 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=53.0
Q ss_pred HHHHHhhCCCCceEEecccccCHHHHHHHHHcC--cEEecCCccccccccccC------CCEEEEcCCCCCHHHHHHHHh
Q 018062 46 AYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNK------GDVVVLPAFGAAVEEMVTLNN 117 (361)
Q Consensus 46 a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~G--V~~v~~~~~~~~l~el~~------g~~VIIrAHGv~~~v~~~l~~ 117 (361)
+.+.+++.+-..|+.+|+++. +.+.+.|++.+ +..|.++.+.. ..+|. ++.=|.=.||-+..
T Consensus 21 ~~~~~~~~~~d~iih~GDi~~-~~~~~~l~~~~~~~~~V~GN~D~~--~~lp~~~~~~~~g~~i~l~HG~~~~------- 90 (178)
T cd07394 21 FKKLLVPGKIQHVLCTGNLCS-KETYDYLKTIAPDVHIVRGDFDEN--LNYPETKVITVGQFKIGLIHGHQVV------- 90 (178)
T ss_pred HHHHhccCCCCEEEECCCCCC-HHHHHHHHhhCCceEEEECCCCcc--ccCCCcEEEEECCEEEEEEECCcCC-------
Confidence 344444311236999999987 77889998854 77777642210 02332 22234456775310
Q ss_pred cCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeee
Q 018062 118 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT 161 (361)
Q Consensus 118 kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi 161 (361)
|+- ......+...+.++.+++.|+-.+|.+.=.
T Consensus 91 ----------~~~-~~~~~~~~~~~~~~dvii~GHTH~p~~~~~ 123 (178)
T cd07394 91 ----------PWG-DPDSLAALQRQLDVDILISGHTHKFEAFEH 123 (178)
T ss_pred ----------CCC-CHHHHHHHHHhcCCCEEEECCCCcceEEEE
Confidence 000 011122223456889999999888987533
No 206
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=34.27 E-value=57 Score=32.50 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=37.4
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
++.+.|+-|..+.. +..+...+=++..|||+.+|+-+.-...+|...+.|..
T Consensus 43 ~~~~~d~~~~~~~a----~~~~~~~~~~V~aviGp~~S~~~~a~a~va~~~~iP~I 94 (382)
T cd06371 43 DYVLLPEPCETSRA----LAAFLGYEGYASAFVGPVNPGYCEAAALLAKEWDKALF 94 (382)
T ss_pred EEEEecCCCChhHH----HHHHHcccCCceEEECCCCchHHHHHHHHHHhcCceEE
Confidence 46678999986532 22222111246778999999999999999999998754
No 207
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.18 E-value=3.9e+02 Score=24.86 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=50.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++.. .++..-|..+..-+.+...+. + -.+.+.++-.. .++| +.++.+.+..+|.+++.+...++ ...
T Consensus 2 I~vi~~-~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~--~~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~ 71 (288)
T cd01538 2 IGLSLP-TKTEERWIRDRPNFEAALKEL-G-----AEVIVQNANGD--PAKQISQIENMIAKGVDVLVIAPVDGEA-LAS 71 (288)
T ss_pred eEEEEe-CCCcHHHHHHHHHHHHHHHHc-C-----CEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEecCChhh-HHH
Confidence 445543 245566777777776643322 1 23445554333 3344 44444545789999988743332 234
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
+++.+++.+.|...++..
T Consensus 72 ~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 72 AVEKAADAGIPVIAYDRL 89 (288)
T ss_pred HHHHHHHCCCCEEEECCC
Confidence 555666788999888764
No 208
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=34.13 E-value=3.3e+02 Score=27.87 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=37.3
Q ss_pred ecccccCHHHHHHHHHcCcEEecCCccccccccccC-CCEEEEcCCCCCHH--HHHHHHhcCCcEE
Q 018062 61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE--EMVTLNNKNVQIV 123 (361)
Q Consensus 61 lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~-g~~VIIrAHGv~~~--v~~~l~~kgl~Vi 123 (361)
.-+.-.++...+.|+++|+.+..... .+.+.+ -| +||-+=||+|. .++.|+++|+.|+
T Consensus 28 ~~D~~~~~~~~~~l~~~gi~~~~~~~----~~~~~~~~d-~vV~SpgI~~~~~~~~~a~~~~i~v~ 88 (448)
T TIGR01081 28 GSDANVYPPMSTQLEAQGIEIIEGFD----AAQLEPKPD-LVVIGNAMKRGNPCVEAVLNLNLPYT 88 (448)
T ss_pred EECCCCCcHHHHHHHHCCCEEeCCCC----HHHCCCCCC-EEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 34444566566679999998875321 122222 34 66778889864 5777888888775
No 209
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=34.08 E-value=57 Score=38.81 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=38.0
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCc-hhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSS-NT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
.+++++++.+-+-.+|.+|||||-.|. +..+|+|-+++.|.+.--|.=+.-||.+
T Consensus 183 e~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDND 238 (1328)
T PTZ00468 183 EQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGD 238 (1328)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCC
Confidence 355566655544579999999999987 5569999888888544444445545544
No 210
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=33.89 E-value=3.9e+02 Score=25.73 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHHHHhhCCCC-ceEEecccc----------cCH----HHHHHHHHcCcEEecCCccccccccc-cCCCEE
Q 018062 37 WGVERAVQIAYEARKQFPEE-KIWITNEII----------HNP----TVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVV 100 (361)
Q Consensus 37 ~GV~RAI~~a~~~~~~~~~~-~Vy~lG~iI----------HN~----~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~V 100 (361)
-+.+.+.+.+.+.++...+. ++|+.|... -.+ .+++..++.|+.+.-...+...+... ..|...
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~G~~~ 196 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRAGVDT 196 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE
Confidence 34555666666666643222 677766421 122 34556677888766443221111111 123223
Q ss_pred EEcCCCCCHHHHHHHHhcCCcEEeCcChhhH
Q 018062 101 VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (361)
Q Consensus 101 IIrAHGv~~~v~~~l~~kgl~ViDATCP~V~ 131 (361)
|.=+-.++++..++++++|..++ +||.+.
T Consensus 197 i~H~~~~~~~~~~~l~~~g~~~~--~t~~~~ 225 (342)
T cd01299 197 IEHGFLIDDETIELMKEKGIFLV--PTLATY 225 (342)
T ss_pred EeecCCCCHHHHHHHHHCCcEEe--CcHHHH
Confidence 43233368999999999999885 888753
No 211
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=33.84 E-value=79 Score=30.32 Aligned_cols=57 Identities=9% Similarity=-0.000 Sum_probs=41.4
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
++.+.||=+.++.-. +++++|. .+-.+..|+|+..|+.+..+.+++.+.+.|.....
T Consensus 40 ~l~~~D~~~~p~~a~-~~~~~lv-~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~ 96 (333)
T cd06359 40 EVVVEDDGLKPDVAK-QAAERLI-KRDKVDFVTGVVFSNVLLAVVPPVLESGTFYISTN 96 (333)
T ss_pred EEEecCCCCChHHHH-HHHHHHH-hhcCCcEEEccCCcHHHHHHHHHHHHcCCeEEecC
Confidence 556778888776555 4557776 33345566788889999999999999988766553
No 212
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=33.78 E-value=3.4e+02 Score=24.42 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=45.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
++++... ++-.-|..+.+.+++...+ .+ -.+.+.. +.....+| +.+..+....+|.+++.+... +..
T Consensus 2 i~vi~~~-~~~~~~~~~~~~~~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiii~~~~~---~~~ 69 (268)
T cd06298 2 VGVIIPD-ITNSYFAELARGIDDIATM-YK-----YNIILSN--SDNDKEKELKVLNNLLAKQVDGIIFMGGKI---SEE 69 (268)
T ss_pred EEEEECC-CcchHHHHHHHHHHHHHHH-cC-----CeEEEEe--CCCCHHHHHHHHHHHHHhcCCEEEEeCCCC---cHH
Confidence 4455433 2344566666666654322 22 1222221 12223455 334455456899999987432 234
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
..+.+++.+.|...+...
T Consensus 70 ~~~~l~~~~ipvV~~~~~ 87 (268)
T cd06298 70 HREEFKRSPTPVVLAGSV 87 (268)
T ss_pred HHHHHhcCCCCEEEEccc
Confidence 555566678899888764
No 213
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=33.76 E-value=74 Score=34.39 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=44.2
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 018062 33 YGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 33 ~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
..+-..|.++|+.+.++.++. ++++-+.|++.-+|..+..|-.+|+..+.
T Consensus 474 ~~~hPaV~~~i~~vi~~a~~~-g~~v~vCGe~a~~p~~~~~l~~~G~~~ls 523 (565)
T TIGR01417 474 QPYNPAVLRLIKLVIDAAKAE-GIWVGMCGEMAGDERAIPLLLGLGLRELS 523 (565)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCeEEEeCCcCCCHHHHHHHHHCCCCEEE
Confidence 446789999999998888765 67999999999999999999999999885
No 214
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=33.59 E-value=52 Score=32.94 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHHHHhhCCCCceEEecc--cccCHHHHHHHHHcCcEEecCCccccccccccCCC-EEEEcCCC-C----C
Q 018062 37 WGVERAVQIAYEARKQFPEEKIWITNE--IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGD-VVVLPAFG-A----A 108 (361)
Q Consensus 37 ~GV~RAI~~a~~~~~~~~~~~Vy~lG~--iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~-~VIIrAHG-v----~ 108 (361)
.|-+.||+-|+. +..|..--| =+-.+.-.++++..||.++++. .+-...|. .|+|.-+| . .
T Consensus 32 GGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD-----~eaa~~~Ei~VLFTPFGk~T~~Ia 100 (340)
T COG4007 32 GGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDD-----AEAAEHGEIHVLFTPFGKATFGIA 100 (340)
T ss_pred CchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEEecCc-----hhhhhcceEEEEecccchhhHHHH
Confidence 467777777643 111211111 1456777899999999999863 23334454 47899999 4 4
Q ss_pred HHHHHHHHhcCCcEEeCcChhhHHHHHH
Q 018062 109 VEEMVTLNNKNVQIVDTTCPWVSKVWTS 136 (361)
Q Consensus 109 ~~v~~~l~~kgl~ViDATCP~V~kv~~~ 136 (361)
.++.+.+.+--+.---+|||=|.--+.+
T Consensus 101 rei~~hvpEgAVicnTCT~sp~vLy~~L 128 (340)
T COG4007 101 REILEHVPEGAVICNTCTVSPVVLYYSL 128 (340)
T ss_pred HHHHhhCcCCcEecccccCchhHHHHHh
Confidence 5555555553333344566655443433
No 215
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=33.53 E-value=36 Score=28.65 Aligned_cols=18 Identities=11% Similarity=0.475 Sum_probs=15.6
Q ss_pred HHHHHhcCCcEEeCcChhh
Q 018062 112 MVTLNNKNVQIVDTTCPWV 130 (361)
Q Consensus 112 ~~~l~~kgl~ViDATCP~V 130 (361)
.+.+++.|++|| .+|||-
T Consensus 65 l~~ar~~g~kii-P~Csf~ 82 (99)
T COG2388 65 LEEAREAGLKII-PLCSFA 82 (99)
T ss_pred HHHHHHcCCeEc-ccchHH
Confidence 678899999999 899943
No 216
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=33.30 E-value=77 Score=26.95 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=31.5
Q ss_pred HHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 273 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 273 A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
|.+-|. .++=-.|.|-.....++.||..+|++.|.|.-
T Consensus 47 aTRvLL-RRvP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe 84 (100)
T PF15608_consen 47 ATRVLL-RRVPWKVLVRDPDDPDLAHLLLLAEEKGVPVE 84 (100)
T ss_pred HHHHHH-hcCCCEEEECCCCCccHHHHHHHHHHcCCcEE
Confidence 445576 57888888999999999999999999998743
No 217
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=33.24 E-value=2.1e+02 Score=27.70 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=34.3
Q ss_pred CceEEecccccCHHHH----HHHHHcCcEEecCCcc-c--cccccccCCCEE-EEcCCCCCHHHHHHH
Q 018062 56 EKIWITNEIIHNPTVN----KRLEEMAVQNIPVEEG-K--KQFDVVNKGDVV-VLPAFGAAVEEMVTL 115 (361)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv----~~L~~~GV~~v~~~~~-~--~~l~el~~g~~V-IIrAHGv~~~v~~~l 115 (361)
++||.+| +=..--|- .+|...|+.+.--.+. . ..+..+.++|.| +|+--|-++++.+.+
T Consensus 131 ~rI~~~G-~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a 197 (281)
T COG1737 131 RRIYFFG-LGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAA 197 (281)
T ss_pred CeEEEEE-echhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHH
Confidence 5688888 43333332 3456667775542111 1 123355677765 588889999886654
No 218
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.07 E-value=2.5e+02 Score=26.72 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=38.0
Q ss_pred cccccccccHHHHHHHHHHHHchhc-CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~-~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++.+.||-+.+...++ ++++|... +||+ |||...|+++..+ +++.+.+.|.....+.
T Consensus 42 ~lv~~D~~~~~~~~~~-~~~~li~~~~V~~--iig~~~s~~~~~~-~~~~~~~ip~v~~~~~ 99 (341)
T cd06341 42 EYVWCDDQGDPASAAA-CARDLVEDDKVVA--VVGGSSGAGGSAL-PYLAGAGIPVIGGAGT 99 (341)
T ss_pred EEEEecCCCChhHHHH-HHHHHHHhcCceE--EEecccccchhHH-HHHhhcCCceecCCCC
Confidence 4678899998877764 45666533 4554 4566556665544 8888888887776654
No 219
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.04 E-value=3.7e+02 Score=24.28 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=47.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++..+ ++-.-|..+.+-+.+...+ .+ -.+.++++--. .+.| +.++.+.+.++|.+++..+..+.+...
T Consensus 2 Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~~~~--~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~ 72 (273)
T cd06305 2 IAVVRYG-GSGDFDQAYLAGTKAEAEA-LG-----GDLRVYDAGGD--DAKQADQIDQAIAQKVDAIIIQHGRAEVLKPW 72 (273)
T ss_pred eEEEeec-CCCcHHHHHHHHHHHHHHH-cC-----CEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEecCChhhhHHH
Confidence 4555443 3333455566666553322 22 12334443222 2333 455555556899999987644434443
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
.+-+++.|.|...+.+.
T Consensus 73 -i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 73 -VKRALDAGIPVVAFDVD 89 (273)
T ss_pred -HHHHHHcCCCEEEecCC
Confidence 44566788898888764
No 220
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=32.95 E-value=83 Score=31.14 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEE
Q 018062 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (361)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIi 150 (361)
+..+|.-++|.|.+..+++++.|+.|+ ++|+-+. .++++.+.|-..|++
T Consensus 87 ~v~~v~~~~g~p~~~i~~lk~~g~~v~-~~v~s~~----~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 87 KVPVVTTGAGNPGKYIPRLKENGVKVI-PVVASVA----LAKRMEKAGADAVIA 135 (307)
T ss_pred CCCEEEEcCCCcHHHHHHHHHcCCEEE-EEcCCHH----HHHHHHHcCCCEEEE
Confidence 444555578999899999999999988 5666654 456666778888876
No 221
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=32.93 E-value=96 Score=28.86 Aligned_cols=43 Identities=33% Similarity=0.398 Sum_probs=28.7
Q ss_pred HHHHHchhcCCcEEEEEcCC-CCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 272 DAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 272 ~A~~eLa~~~vD~miVIGGk-nSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++.+.+ .+.|++||||-. .-.-+.+|.+.++..+.+.+.|.-.
T Consensus 157 ~~~~~~--~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~ 200 (224)
T cd01412 157 EAVEAL--AKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPE 200 (224)
T ss_pred HHHHHH--HcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCC
Confidence 344444 379999999921 1134558888888888777777654
No 222
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.59 E-value=67 Score=26.19 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=29.7
Q ss_pred cCCCE-EEEcCCCCCHHH---HHHHHhcCCcEEeCcChhhHHHHHH
Q 018062 95 NKGDV-VVLPAFGAAVEE---MVTLNNKNVQIVDTTCPWVSKVWTS 136 (361)
Q Consensus 95 ~~g~~-VIIrAHGv~~~v---~~~l~~kgl~ViDATCP~V~kv~~~ 136 (361)
.++|. ++|+..|-+++. .+.|+++|..+|--||.--..+.+.
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred cccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 34554 578889999887 4567778888888887666555533
No 223
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.57 E-value=87 Score=25.73 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=34.8
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
.+=|++|++.- .+|.++..+++.|++.|.+++.|.+..+=+-.
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 46799999975 57778889999999999999999987654444
No 224
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=32.49 E-value=89 Score=29.58 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=30.1
Q ss_pred HHHHHHchhcCCcEEEEEcCCCC-chhHHHHHHHHhcCCCeEEeCCC
Q 018062 271 QDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 271 Q~A~~eLa~~~vD~miVIGGknS-SNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
+.+...+ .++|++||||-.-. .-..+|.+.++..|.+...|.-.
T Consensus 169 ~~a~~~~--~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~ 213 (242)
T PRK00481 169 DEAYEAL--EEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLE 213 (242)
T ss_pred HHHHHHH--hcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCC
Confidence 4455555 36899999993222 24568888888888777766544
No 225
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=32.42 E-value=51 Score=32.65 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=42.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEE
Q 018062 216 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV 288 (361)
Q Consensus 216 ~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVI 288 (361)
++.+++++.=---+..+.-+++..|.+. ..+.+++ ..+++ --.-.++-+++.+|+ ..||.++|=
T Consensus 129 dl~qy~WihfE~Rnp~etlkM~~~I~~~-N~r~pe~---qrI~v----Svd~en~req~~~l~-am~DyVf~s 192 (308)
T KOG2947|consen 129 DLTQYGWIHFEARNPSETLKMLQRIDAH-NTRQPEE---QRIRV----SVDVENPREQLFQLF-AMCDYVFVS 192 (308)
T ss_pred ccceeeeEEEecCChHHHHHHHHHHHHh-hcCCCcc---ceEEE----EEEecCcHHHHHHHh-hcccEEEEE
Confidence 3568999988888888888888887652 2222221 11111 112346788999998 689999984
No 226
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=32.42 E-value=1.1e+02 Score=27.48 Aligned_cols=60 Identities=13% Similarity=0.261 Sum_probs=43.2
Q ss_pred cccccccccHHHHHHHHHHHHchhc---CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEE---KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~---~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++.+.|+-|... +=..++.+++.. ...+..|+|+..|+.+.-+..+|...+.|..-....
T Consensus 42 ~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~ 104 (298)
T cd06269 42 GYEIYDSCCSPS-DAFSAALDLCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALHIPQISYSAT 104 (298)
T ss_pred eeEEEecCCChH-HHHHHHHHHHhcCCCCCceEEEECCCCchHHHHHHHHhccCCCcEEecccC
Confidence 345677777444 334556666632 267899999999999999999999999887655443
No 227
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=32.36 E-value=85 Score=33.52 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=44.1
Q ss_pred hhHHH-HHHHcCCcccccceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecC
Q 018062 7 SDIIK-KLKENGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (361)
Q Consensus 7 ~~~~~-~~~~~~~~~~~~~mkI~lA~~~GF-C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~ 84 (361)
.+|+. +++-.|.++.||+. .+.|| |.|.-+ .++... + |+-|..-......|..+-
T Consensus 367 ~~iv~~A~~~lG~PY~wGG~-----sp~gfDCSGlV~---~vy~~~----G---------I~LPR~s~~Q~~~G~~Vs-- 423 (481)
T PRK13914 367 SAIIAEAQKHLGKAYSWGGN-----GPTTFDCSGYTK---YVFAKA----G---------ISLPRTSGAQYASTTRIS-- 423 (481)
T ss_pred HHHHHHHHHHcCCcccCCCC-----CCCCcccHHHHH---HHHHHc----C---------CCCCCChHHHHhcCcccc--
Confidence 34554 55666999999984 56799 999854 555432 1 444544455556665432
Q ss_pred CccccccccccCCCEEEEcC
Q 018062 85 EEGKKQFDVVNKGDVVVLPA 104 (361)
Q Consensus 85 ~~~~~~l~el~~g~~VIIrA 104 (361)
.+++.+||.|+|..
T Consensus 424 ------~selqpGDLVFF~~ 437 (481)
T PRK13914 424 ------ESQAKPGDLVFFDY 437 (481)
T ss_pred ------cccCCCCCEEEeCC
Confidence 35677899888863
No 228
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.14 E-value=70 Score=26.80 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCe-EEEEecCC
Q 018062 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (361)
Q Consensus 109 ~~v~~~l~~kgl~V-iDATCP~V~kv~~~v~~~~~~Gy~-IIIiG~~~ 154 (361)
-++.+.|++.|+.+ +|-. +++.+..+...+.|+. ++|+|+..
T Consensus 45 ~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 45 KEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred HHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 34678888889888 5644 5778888888888987 66678554
No 229
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=32.04 E-value=3.7e+02 Score=24.03 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=46.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHHH
Q 018062 221 GIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (361)
Q Consensus 221 ~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~kL 299 (361)
+++.-+ ++..-|..+.+-+++.... .+ -++.+.++ .....+| +.+++|.+..+|.+++.+... +..+
T Consensus 3 gvv~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~~dgii~~~~~~---~~~~ 70 (259)
T cd01542 3 GVIVPR-LDSFSTSRTVKGILAALYE-NG-----YQMLLMNT--NFSIEKEIEALELLARQKVDGIILLATTI---TDEH 70 (259)
T ss_pred EEEecC-CccchHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEeCCCC---CHHH
Confidence 444432 3444556666666654322 11 12322222 1223444 555667667899999997532 3455
Q ss_pred HHHHHhcCCCeEEeCCC
Q 018062 300 QEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 300 ~eia~~~~~~t~~Ie~~ 316 (361)
.+.+++.+.|...++..
T Consensus 71 ~~~~~~~~ipvv~~~~~ 87 (259)
T cd01542 71 REAIKKLNVPVVVVGQD 87 (259)
T ss_pred HHHHhcCCCCEEEEecc
Confidence 56666778899888764
No 230
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=31.97 E-value=2.2e+02 Score=28.77 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhcCccccccccccccccc-HHHHHHH-HHHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~-~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ-~A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|+...+... -++.+.+.|++ . +.++.+|+.++ +.|.+-= ++++.+.+.++|++|-|||-..-
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~-----~-----~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSvi 99 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDE-----A-----GIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPI 99 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHH-----C-----CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 58888887665443 45666666654 1 12344566554 3333332 23333323579999999999999
Q ss_pred hhHHHHHHHHhc
Q 018062 295 NTSHLQEIAEDR 306 (361)
Q Consensus 295 NT~kL~eia~~~ 306 (361)
.+-|...+....
T Consensus 100 D~aKaia~~~~~ 111 (379)
T TIGR02638 100 DTAKAIGIISNN 111 (379)
T ss_pred HHHHHHHHHHhC
Confidence 999987776443
No 231
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=31.91 E-value=62 Score=26.60 Aligned_cols=32 Identities=31% Similarity=0.672 Sum_probs=26.8
Q ss_pred cCCcEEEEEcCCCCchhHHH-HHHHHhcCCCeE
Q 018062 280 EKVDLILVVGGWNSSNTSHL-QEIAEDRGIPSY 311 (361)
Q Consensus 280 ~~vD~miVIGGknSSNT~kL-~eia~~~~~~t~ 311 (361)
.+||+++..+|..+|..-+| +++|++.|.+.+
T Consensus 58 ~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 58 SDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 37999999999888888776 778888887765
No 232
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=31.75 E-value=74 Score=31.89 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=31.6
Q ss_pred HHHHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEe
Q 018062 267 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 313 (361)
Q Consensus 267 T~~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~I 313 (361)
...|+++++.|-+..+|.+++|||-.|-.+- +|.| .+.+...|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e----~~i~vigi 121 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTE----HGFPCVGL 121 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHH----cCCCEEEe
Confidence 4578888888877789999999998877665 4443 35666555
No 233
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=31.75 E-value=81 Score=31.41 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=31.1
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEe
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 313 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~I 313 (361)
..++++++.|-+..+|.+++|||-.|-.+. +|+ +..+.+...|
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~---e~~~i~vigi 121 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLY---EEGGIPVIGL 121 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHH---HhhCCCEEee
Confidence 457778888866789999999999987665 443 3355666554
No 234
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=31.72 E-value=56 Score=32.59 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=36.3
Q ss_pred ccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 257 FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 257 ~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
+...|+ +.+..- .+++++|.. =++..|+|+..|+.+..+.+++++.+.+.+.
T Consensus 37 lv~~D~-~~p~~a-~~~a~~Li~--~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~ 88 (347)
T TIGR03863 37 LDEVAV-RTPEDL-VAALKALLA--QGVRFFVLDLPAAALLALADAAKAKGALLFN 88 (347)
T ss_pred EEEccC-CCHHHH-HHHHHHHHH--CCCCEEEecCChHHHHHHHHHHHhCCcEEEe
Confidence 344454 554443 556667763 2567789999999999999999998766543
No 235
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=31.64 E-value=4e+02 Score=24.20 Aligned_cols=85 Identities=18% Similarity=0.287 Sum_probs=48.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHH--HHHHH-HHHHHchhcCCcEEEEEcCCCC---
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDA--TQERQ-DAMYKMVEEKVDLILVVGGWNS--- 293 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~A--T~~RQ-~A~~eLa~~~vD~miVIGGknS--- 293 (361)
|+++..+ ++-.-|..+.+-+.+...+. + +.+ ++|.+ ..++| ++++.|.+..+|.+|+.++..+
T Consensus 2 igvv~~~-~~~~~~~~~~~gi~~~~~~~-g-------~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~ 70 (273)
T cd01541 2 IGVITTY-ISDYIFPSIIRGIESVLSEK-G-------YSL--LLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPN 70 (273)
T ss_pred eEEEeCC-ccchhHHHHHHHHHHHHHHc-C-------CEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccc
Confidence 4555543 44555777777776643332 1 111 12322 23445 4555666678999999876432
Q ss_pred chhHHHHHHHHhcCCCeEEeCCC
Q 018062 294 SNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 294 SNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
.+...+. -+.+.+.|...+.+.
T Consensus 71 ~~~~~~~-~~~~~~ipvV~~~~~ 92 (273)
T cd01541 71 PNIDLYL-KLEKLGIPYVFINAS 92 (273)
T ss_pred ccHHHHH-HHHHCCCCEEEEecC
Confidence 2334444 456778899999865
No 236
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=31.48 E-value=1.8e+02 Score=29.64 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=62.9
Q ss_pred EEE-eCCCC-CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEE--E
Q 018062 27 VKL-AESYG-FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV--L 102 (361)
Q Consensus 27 I~l-A~~~G-FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VI--I 102 (361)
+++ .=|+| |.-..+.|++-|.+.+++.+-.-|.+=|-..+.-..++.|.+.||.++-.+- | -|.-.... +
T Consensus 98 ~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiG----L--tPQs~~~lGGy 171 (332)
T PLN02424 98 LLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVG----L--TPQAISVLGGF 171 (332)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeec----c--cceeehhhcCc
Confidence 444 45777 7778999999999987653323588887766666889999999999985420 0 02211111 5
Q ss_pred cCCCCCHHH-------HHHHHhcCCcEEeCcChhhH
Q 018062 103 PAFGAAVEE-------MVTLNNKNVQIVDTTCPWVS 131 (361)
Q Consensus 103 rAHGv~~~v-------~~~l~~kgl~ViDATCP~V~ 131 (361)
|..|-+.+. -..+++.|..-+=-.|---.
T Consensus 172 kvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~ 207 (332)
T PLN02424 172 RPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP 207 (332)
T ss_pred cccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH
Confidence 667777664 33444556666555554444
No 237
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=31.46 E-value=3.1e+02 Score=26.59 Aligned_cols=94 Identities=10% Similarity=0.081 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH-----
Q 018062 42 AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL----- 115 (361)
Q Consensus 42 AI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~VIIrAHGv~~~v~~~l----- 115 (361)
.-.+|...++. +..|+.+. .|+...+.|.+.|+....+ ..++ ...|.| |-+---+..+.+.+
T Consensus 13 G~~mA~~l~~~--G~~V~v~d---~~~~~~~~~~~~g~~~~~s------~~~~~~~aDvV-i~~vp~~~~~~~vl~~~~~ 80 (296)
T PRK15461 13 GSPMASNLLKQ--GHQLQVFD---VNPQAVDALVDKGATPAAS------PAQAAAGAEFV-ITMLPNGDLVRSVLFGENG 80 (296)
T ss_pred HHHHHHHHHHC--CCeEEEEc---CCHHHHHHHHHcCCcccCC------HHHHHhcCCEE-EEecCCHHHHHHHHcCccc
Confidence 34456555553 33576664 4888899999999876653 2222 234544 43333232233222
Q ss_pred ----HhcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 018062 116 ----NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (361)
Q Consensus 116 ----~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~I 147 (361)
...|..+||++--.....++.++.+.+.|...
T Consensus 81 i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ 116 (296)
T PRK15461 81 VCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSM 116 (296)
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 13577889999999999999999998888663
No 238
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=31.44 E-value=83 Score=29.62 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=41.8
Q ss_pred cccccccccHHHHHHHHHHHHchhc-CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~-~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++.+.||=+.+...+ +++++|... .||+ |||+..|+.+..+.+.+++.+.|.....+.
T Consensus 40 ~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~~ 98 (333)
T cd06332 40 EVVVEDDELKPDVAV-QAARKLIEQDKVDV--VVGPVFSNVALAVVPSLTESGTFLISPNAG 98 (333)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHHHcCCcE--EEcCCccHHHHHHHHHHhhcCCeEEecCCC
Confidence 566788888766555 466667533 5766 568877878888999999988887766544
No 239
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=31.27 E-value=58 Score=32.04 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=40.2
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
++.+.||-|.+..-+ +++++|. .+ |-+.+|+|..|+.+..+.+++.+.+.|.....
T Consensus 42 elv~~D~~~~p~~a~-~~a~~Li-~~-~~V~~i~~~~S~~~~a~~~~~~~~~vp~i~~~ 97 (351)
T cd06334 42 EWEECDTGYEVPRGV-ECYERLK-GE-DGAVAFQGWSTGITEALIPKIAADKIPLMSGS 97 (351)
T ss_pred EEEEecCCCCcHHHH-HHHHHHh-cc-CCcEEEecCcHHHHHHhhHHHhhcCCcEEecc
Confidence 567888888765544 4677786 33 44445567889999999999999988765444
No 240
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=31.21 E-value=55 Score=31.40 Aligned_cols=54 Identities=9% Similarity=0.200 Sum_probs=41.1
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
++.+.||-|.+..-. +++++|. .+-++..|||+..|..+..+..++. .+.|...
T Consensus 42 ~l~~~D~~~~p~~a~-~~a~~Li-~~~~v~aviG~~~s~~a~a~~~~~~-~~vp~i~ 95 (333)
T cd06358 42 ELVIVDDGSPPAEAA-AAAARLV-DEGGVDAIIGWHTSAVRNAVAPVVA-GRVPYVY 95 (333)
T ss_pred EEEEECCCCChHHHH-HHHHHHH-HhCCCcEEEecCcHHHHHHHHHHHh-cCceEEe
Confidence 567889999876655 5668886 4556888889999999999999997 6555443
No 241
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=31.11 E-value=1.2e+02 Score=27.85 Aligned_cols=48 Identities=27% Similarity=0.362 Sum_probs=37.8
Q ss_pred HHHHHHHHchhcCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 269 ERQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
...++++.+. +.|++||||- -.-.+...|.+.+++.+.+.+.|.-...
T Consensus 159 ~~~~~~~~~~--~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~ 207 (222)
T cd00296 159 WFDRALEALL--EADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPT 207 (222)
T ss_pred HHHHHHHHHh--cCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCC
Confidence 3556666674 5999999996 5678899999999888888998876543
No 242
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=31.03 E-value=76 Score=31.70 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=33.5
Q ss_pred HHHHHhcCCcEEeCc----------ChhhHHHHHHHHHHhhCCCeEEEEe
Q 018062 112 MVTLNNKNVQIVDTT----------CPWVSKVWTSVEKHKKGDYTSIIHG 151 (361)
Q Consensus 112 ~~~l~~kgl~ViDAT----------CP~V~kv~~~v~~~~~~Gy~IIIiG 151 (361)
=..+|+.|..+||.| ||-.+.+.++++++.++||-+++.|
T Consensus 112 D~iiR~~GvplV~G~IPGva~ivG~a~~~e~~~~I~~e~q~r~~lv~l~G 161 (287)
T cd01917 112 DPIVRGLGIKMVDWTIPGEAVILGRAKDSKALKKIVDDLMGRGFMLFLCD 161 (287)
T ss_pred cHHHHHcCCceecCCCCeEEEEEecCCChHHHHHHHHHHHHCCcEEEEec
Confidence 345667788888876 4577899999999999999999999
No 243
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=30.98 E-value=93 Score=29.86 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=31.8
Q ss_pred HHHHchhcCCcEEEEEcCCCCch-hHHHHHHHHhcCCCeEEeCCCC
Q 018062 273 AMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 273 A~~eLa~~~vD~miVIGGknSSN-T~kL~eia~~~~~~t~~Ie~~~ 317 (361)
++.+.+ .++|++||||-.-+-. ...|...|++.|.+...|.-..
T Consensus 165 ~~~~~~-~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 165 EIESVM-SKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred HHHHHH-HhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 344445 5799999999854333 3478889999998888887544
No 244
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=30.55 E-value=90 Score=29.49 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 281 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 281 ~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
-.|++||+++..+|-|...+..|.+.|.+.|-+...
T Consensus 155 ls~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~ 190 (220)
T TIGR00732 155 LSRAVLVVEAPLKSGALITARYALEQGREVFAYPGD 190 (220)
T ss_pred hcCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCC
Confidence 368999999999999999999999999999998654
No 245
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=30.33 E-value=3.2e+02 Score=24.75 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=30.5
Q ss_pred HHHHH-HHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 268 QERQD-AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 268 ~~RQ~-A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
.++|. .+..|.+..+|.+++.+...+.. .++-+.+.|.|...+++.
T Consensus 41 ~~~~~~~i~~~~~~~vdgii~~~~~~~~~---~~~~~~~~~ipvV~~~~~ 87 (268)
T cd06270 41 AEKEREAIEFLLERRCDALILHSKALSDD---ELIELAAQVPPLVLINRH 87 (268)
T ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCHH---HHHHHhhCCCCEEEEecc
Confidence 34553 34445557899999998654432 244556778899888774
No 246
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=30.13 E-value=1.4e+02 Score=29.43 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=34.6
Q ss_pred HHHHHHchhcCCcEEEEE----cCCCCchhHHHHHHHHhcCCCeEEeCC
Q 018062 271 QDAMYKMVEEKVDLILVV----GGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 271 Q~A~~eLa~~~vD~miVI----GGknSSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
++.++++. ..+|.++|+ ||-.|.=+..+++++++.+..++-|-+
T Consensus 75 ~~~I~~~l-~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt 122 (304)
T cd02201 75 REEIKEAL-EGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVT 122 (304)
T ss_pred HHHHHHHH-hCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEe
Confidence 34567776 579999998 457777788899999999988877765
No 247
>PRK13938 phosphoheptose isomerase; Provisional
Probab=30.09 E-value=1.2e+02 Score=28.07 Aligned_cols=55 Identities=16% Similarity=0.095 Sum_probs=41.1
Q ss_pred ccccHHHH-HHHHHHHHchhcCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 261 NTICDATQ-ERQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 261 nTIC~AT~-~RQ~A~~eLa~~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
|...+++. .||-+ ..+ .+-|++|++-. -+|.|+..+++.|++.|.++..|.+..+
T Consensus 95 nd~~~~~~~~~~~~--~~~-~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 95 NDYDYDTVFARALE--GSA-RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred ccccHHHHHHHHHH--hcC-CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 44555543 34444 344 57899999976 4788999999999999999999988654
No 248
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=30.03 E-value=2.2e+02 Score=28.25 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchh---cCCcEEEEEcCCCC
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVE---EKVDLILVVGGWNS 293 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~---~~vD~miVIGGknS 293 (361)
+++.+|+-.+....-.+.+.+.|++ .+.+ ...+.+.+.-++.|.+-=++ +..+.. .+.|++|.|||=..
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~-----~g~~--~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 93 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQA-----LGYN--VLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVV 93 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHh-----cCCc--eeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHH
Confidence 4777777555544444455555543 1100 00012233344444332222 222322 23499999999999
Q ss_pred chhHHHHHHHHhcCCCeEEeCCC
Q 018062 294 SNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 294 SNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
-.+.|.+......+.|-+.|-|-
T Consensus 94 ~D~aK~iA~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 94 GDLAGFVAATYMRGIRFIQVPTT 116 (344)
T ss_pred HHHHHHHHHHHccCCCEEEecCc
Confidence 99999987666678888888873
No 249
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=29.98 E-value=2.1e+02 Score=28.42 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=32.2
Q ss_pred HHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 273 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 273 A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
.++.+. .++|++|-|||=.+-.+-|.+... .+.|-+.|-|-.
T Consensus 73 ~~~~~~-~~~d~IIaIGGGs~~D~aK~vA~~--~~~p~i~IPTTa 114 (348)
T cd08175 73 VLKELE-RDTDLIIAVGSGTINDITKYVSYK--TGIPYISVPTAP 114 (348)
T ss_pred HHHHhh-ccCCEEEEECCcHHHHHHHHHHHh--cCCCEEEecCcc
Confidence 333443 379999999999999999987654 567888888763
No 250
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.81 E-value=1.4e+02 Score=27.14 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=33.0
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
.+-|++|+|.. -+|.++...++.|++.|.+++.|.+..+
T Consensus 105 ~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 105 RPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46799999974 5788888999999999999999988643
No 251
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=29.81 E-value=80 Score=33.28 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=38.5
Q ss_pred HHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
.+++.+..|.+..+|.+++|||-.|--+- +|.|-+++.|.+--.|.=+.-||.+
T Consensus 160 ~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDND 214 (443)
T PRK06830 160 DPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDND 214 (443)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 56677777766689999999999998766 7888887777433333334545554
No 252
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=29.51 E-value=1.6e+02 Score=28.58 Aligned_cols=82 Identities=11% Similarity=-0.010 Sum_probs=44.1
Q ss_pred ceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHh---cCC-cEEeCcChhhHH
Q 018062 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN---KNV-QIVDTTCPWVSK 132 (361)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~---kgl-~ViDATCP~V~k 132 (361)
+.|..--=-.|+.+++.+++.|..++.= + +...|.. +.-+..+.+...+ .|- .+.=.+-.-+.-
T Consensus 178 ~~fRpP~G~~n~~~~~~l~~~G~~~v~W-------s-vd~~Dw~----~~~~~~i~~~v~~~~~~G~IILmHd~~~T~~a 245 (268)
T TIGR02873 178 KWFAPPSGSFNDNVVQIAADLQMGTIMW-------T-VDTIDWK----NPSPSVMVNRVLSKIHPGAMVLMHPTASSTEG 245 (268)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCeEEEe-------c-cCCCCCC----CCCHHHHHHHHHhcCCCCcEEEEcCCccHHHH
Confidence 3454444468999999999999998751 1 1111210 0111222222211 122 222222234567
Q ss_pred HHHHHHHHhhCCCeEEEE
Q 018062 133 VWTSVEKHKKGDYTSIIH 150 (361)
Q Consensus 133 v~~~v~~~~~~Gy~IIIi 150 (361)
+-..+..+.++||+.+-+
T Consensus 246 L~~iI~~Lk~kGy~fvtl 263 (268)
T TIGR02873 246 LEEMITIIKEKGYKIGTI 263 (268)
T ss_pred HHHHHHHHHHCCCEEEeH
Confidence 788888888899987643
No 253
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=29.39 E-value=1.8e+02 Score=29.46 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=47.4
Q ss_pred ceEEEEEc-CCCC-hHHHHHHHHHHHHHHhhhcCcccccccccccccccH-HHH-HHHHHHHHchhcCCcEEEEEcCCCC
Q 018062 218 VKVGIANQ-TTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICD-ATQ-ERQDAMYKMVEEKVDLILVVGGWNS 293 (361)
Q Consensus 218 ~kv~vvsQ-TT~s-~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~-AT~-~RQ~A~~eLa~~~vD~miVIGGknS 293 (361)
+|+.+|+- .+.. ...++++.+.|++ . +.++.+|+.++. .|. .=++.++.+....+|++|-|||=..
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~-----~-----gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 96 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDE-----H-----GIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSP 96 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHH-----c-----CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 47777774 3333 3335677777754 1 123445665542 221 2223344443357999999999999
Q ss_pred chhHHHHHHHHhc
Q 018062 294 SNTSHLQEIAEDR 306 (361)
Q Consensus 294 SNT~kL~eia~~~ 306 (361)
-.+-|.+.+.-..
T Consensus 97 iD~aK~ia~~~~~ 109 (383)
T cd08186 97 IDSAKSAAILLEH 109 (383)
T ss_pred HHHHHHHHHHHhC
Confidence 9999998776433
No 254
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=29.33 E-value=3.5e+02 Score=22.86 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=48.0
Q ss_pred ceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEe----CcChhhHH
Q 018062 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD----TTCPWVSK 132 (361)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViD----ATCP~V~k 132 (361)
.+++-|.| +|.-++.|.+.|+++|=.. =|+|.. ...+-..++.+.+++.|+..+. ..=+--..
T Consensus 8 ~~~vs~Q~--~~~d~~~la~~GfktVInl--------Rpd~E~---~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~ 74 (110)
T PF04273_consen 8 DLSVSGQP--SPEDLAQLAAQGFKTVINL--------RPDGEE---PGQPSSAEEAAAAEALGLQYVHIPVDGGAITEED 74 (110)
T ss_dssp TEEEECS----HHHHHHHHHCT--EEEE---------S-TTST---TT-T-HHCHHHHHHHCT-EEEE----TTT--HHH
T ss_pred CeEECCCC--CHHHHHHHHHCCCcEEEEC--------CCCCCC---CCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHH
Confidence 47777766 8888999999999987321 011110 1122334567889999999853 33344556
Q ss_pred HHHHHHHHhhCCCeEEEEecCC
Q 018062 133 VWTSVEKHKKGDYTSIIHGKYS 154 (361)
Q Consensus 133 v~~~v~~~~~~Gy~IIIiG~~~ 154 (361)
+....+-+....+.|+++...+
T Consensus 75 v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 75 VEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp HHHHHHHHHTTTTSEEEE-SCS
T ss_pred HHHHHHHHHhCCCCEEEECCCC
Confidence 6666666666677888887544
No 255
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=29.25 E-value=1.8e+02 Score=25.27 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=26.6
Q ss_pred CCcEEeCcChhhH--HHHHHHHHHhhCCCeEEEE---ecCCCce
Q 018062 119 NVQIVDTTCPWVS--KVWTSVEKHKKGDYTSIIH---GKYSHEE 157 (361)
Q Consensus 119 gl~ViDATCP~V~--kv~~~v~~~~~~Gy~IIIi---G~~~HpE 157 (361)
.+-|++++.|++. -+.+.++.+.+.+..+++. |.+.||=
T Consensus 92 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~Pl 135 (188)
T TIGR03310 92 GYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPLYKGKRGHPV 135 (188)
T ss_pred EEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEeecCCccCCCE
Confidence 4778999999985 5666666665666656654 3466773
No 256
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.16 E-value=1e+02 Score=25.69 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=32.8
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|+|.- -+|.++...++.|++.|.++..|.+..+
T Consensus 46 ~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 45799988875 5788899999999999999999987654
No 257
>PRK13936 phosphoheptose isomerase; Provisional
Probab=28.99 E-value=1.8e+02 Score=26.59 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=33.2
Q ss_pred cCCcEEEEEcCC-CCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 280 EKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 280 ~~vD~miVIGGk-nSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
++-|++|+|... +|.++..+++.|++.|.++..|.+..
T Consensus 110 ~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 110 QPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 568999999874 77889999999999999999999864
No 258
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=28.91 E-value=1.2e+02 Score=28.72 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=42.4
Q ss_pred cccccccccHHHHHHHHHHHHchh-cCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~-~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
++.+.||-+.+...+ +++++|.. ..||+ |||+..|+.+..+.+++++.+.|.....+..
T Consensus 40 ~l~~~D~~~~~~~~~-~~~~~lv~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~ 99 (336)
T cd06360 40 EFVVEDDEAKPDVAV-EKARKLIEQDKVDV--VVGPVHSGEALAMVKVLREPGTPLINPNAGA 99 (336)
T ss_pred EEEEcCCCCChHHHH-HHHHHHHHHhCCcE--EEccCccHhHHHHHHHHHhcCceEEecCCCC
Confidence 456778888765444 66777752 35777 6688888888889999988888887765543
No 259
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=28.72 E-value=1.6e+02 Score=29.96 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcCccccccccccccccc-HHHHH-HHHHHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQE-RQDAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~-~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~-RQ~A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|+-..+.. ..++++.+.|++. +..+.+|+.+. ++|.+ =+++++..-+.++|++|-|||-++-
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~----------~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~i 101 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEER----------NIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPH 101 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 5888888765432 3566777766541 12244566653 12222 1233333323579999999999999
Q ss_pred hhHHHHHHHHhc
Q 018062 295 NTSHLQEIAEDR 306 (361)
Q Consensus 295 NT~kL~eia~~~ 306 (361)
.+-|.+.++-..
T Consensus 102 D~AK~ia~~~~~ 113 (383)
T PRK09860 102 DCAKGIALVAAN 113 (383)
T ss_pred HHHHHHHHHHHC
Confidence 999998876544
No 260
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=28.66 E-value=1.6e+02 Score=29.69 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=45.5
Q ss_pred cCHHHHHHHHHcCcEEecCCccccccccc----cCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcChhhHHHHHHHHH
Q 018062 66 HNPTVNKRLEEMAVQNIPVEEGKKQFDVV----NKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEK 139 (361)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~~~~~~~~l~el----~~g~~VIIrAHGv~~~v~~~l~~kgl~V-iDATCP~V~kv~~~v~~ 139 (361)
-||.+++.|.+.|..+ |-.+.. +++.. -+++.+++...+-+++.++.|.+.|+.| +|.-.-+ .++++.+++
T Consensus 38 ~~~~il~~l~~~G~g~-DvaS~~-El~~al~~G~~~~~Ii~~gp~K~~~~L~~ai~~gv~i~iDS~~El-~~i~~~a~~ 113 (379)
T cd06836 38 PLVPVLRLLAEAGAGA-EVASPG-ELELALAAGFPPERIVFDSPAKTRAELREALELGVAINIDNFQEL-ERIDALVAE 113 (379)
T ss_pred CCHHHHHHHHHcCCcE-EEcCHH-HHHHHHHcCCChhhEEEeCCCCCHHHHHHHHHCCCEEEECCHHHH-HHHHHHHHH
Confidence 4677999999988754 211100 01110 1356799999999999999999999865 5554433 345444443
No 261
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=28.62 E-value=3.1e+02 Score=27.59 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=46.4
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhcCccccccccccccccc-HHHHHHH-HHHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~-~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ-~A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|+...+... -++++.+.|++. +.++.+|+.+- +.|.+-= +++..+...++|++|-|||-.+-
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~ 96 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGA----------GIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVI 96 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhc----------CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 57888876655432 356676666541 11234454441 2222222 22222223579999999999999
Q ss_pred hhHHHHHHHHhc
Q 018062 295 NTSHLQEIAEDR 306 (361)
Q Consensus 295 NT~kL~eia~~~ 306 (361)
.+-|...+.-..
T Consensus 97 D~aK~ia~~~~~ 108 (374)
T cd08189 97 DCAKAIAARAAN 108 (374)
T ss_pred HHHHHHHHHHhC
Confidence 999987766443
No 262
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=28.52 E-value=87 Score=27.05 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=37.5
Q ss_pred cCCcEEEEEcCCCCchh-HHHHHHHHhcCCCeEEeCCCCCCCCCCcccccccc-ceeEEEeee
Q 018062 280 EKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMV-CVNILNFTC 340 (361)
Q Consensus 280 ~~vD~miVIGGknSSNT-~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~-~~~~~~~~~ 340 (361)
+++-++|+-++-+..++ .++-.+|++.+.|-.++.+-+||-.. .... ....++||-
T Consensus 45 gkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG~a-----~Gk~~~~svvaI~d 102 (122)
T PRK04175 45 GIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLGKA-----AGLEVGAAAAAIVD 102 (122)
T ss_pred CCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHH-----hCCCCCeEEEEEec
Confidence 44556665555554453 79999999999998888888776433 2222 456677764
No 263
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=28.49 E-value=1.9e+02 Score=29.23 Aligned_cols=79 Identities=14% Similarity=0.245 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhcCccccccccccccccc-HHHHHH-HHHHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQER-QDAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~-~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~R-Q~A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|.-..+... -++++.+.|++ . +.++.+|+.++ +.|.+- .++++.+-+..+|++|-|||-.+-
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~-----~-----g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 100 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDA-----A-----GLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQ 100 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHH-----C-----CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 57888876544333 56667766654 1 12344555554 222222 233333323479999999999999
Q ss_pred hhHHHHHHHHhc
Q 018062 295 NTSHLQEIAEDR 306 (361)
Q Consensus 295 NT~kL~eia~~~ 306 (361)
.+-|..-+....
T Consensus 101 D~aK~ia~~~~~ 112 (382)
T PRK10624 101 DTCKAIGIISNN 112 (382)
T ss_pred HHHHHHHHHHHC
Confidence 999987766443
No 264
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=28.36 E-value=1e+02 Score=28.58 Aligned_cols=45 Identities=31% Similarity=0.386 Sum_probs=30.0
Q ss_pred HHHHHHHchhcCCcEEEEEcCCCC-chhHHHHHHHHhcCCCeEEeCCC
Q 018062 270 RQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 270 RQ~A~~eLa~~~vD~miVIGGknS-SNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
-+++.+.+. ++|++||||-.-+ .-..+|...+++.|.+...|.-.
T Consensus 158 ~~~a~~~~~--~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~ 203 (218)
T cd01407 158 LDEAAEALA--KADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLE 203 (218)
T ss_pred HHHHHHHHh--cCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCC
Confidence 556666664 5899999993211 22347888887777777777543
No 265
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=28.21 E-value=1.5e+02 Score=29.38 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=36.7
Q ss_pred HHHHHHchhcCCcEEEEE----cCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 271 QDAMYKMVEEKVDLILVV----GGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 271 Q~A~~eLa~~~vD~miVI----GGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++.++++. ..+|.++|+ ||..|.=+..+++++++.+..+|-|=+.
T Consensus 75 ~~~I~~~l-e~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~ 123 (303)
T cd02191 75 QEAIDNIP-VHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTL 123 (303)
T ss_pred HHHHHHHH-cCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeC
Confidence 44567776 579999988 6788999999999999999888877653
No 266
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.19 E-value=4.1e+02 Score=23.84 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=30.3
Q ss_pred HHHHHHHHch-hcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 269 ERQDAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 269 ~RQ~A~~eLa-~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
+.++.+.++. ++.+|.+|+.++..+ ...++.+.+.+.|...+++..
T Consensus 47 ~~~~~~~~~~~~~~~dgiii~~~~~~---~~~~~~~~~~~ipvV~~~~~~ 93 (270)
T cd06294 47 ELLEEVKKMIQQKRVDGFILLYSRED---DPIIDYLKEEKFPFVVIGKPE 93 (270)
T ss_pred HHHHHHHHHHHHcCcCEEEEecCcCC---cHHHHHHHhcCCCEEEECCCC
Confidence 3445666643 346999999875333 234556678889998888753
No 267
>PTZ00287 6-phosphofructokinase; Provisional
Probab=28.11 E-value=80 Score=37.87 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=38.8
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCc-hhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSS-NT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
.+++.+++.|.+-..|.+|||||-.|- +..+|++-+++.|.+.-.|.=+.-|+.+
T Consensus 258 e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDND 313 (1419)
T PTZ00287 258 DDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGD 313 (1419)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCC
Confidence 345555555554579999999999987 5558999888888776445545555544
No 268
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=28.10 E-value=64 Score=32.31 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=41.8
Q ss_pred ccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 257 FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 257 ~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
+..+++.+++.+-=+ ++.+|. .+ .+.-|+|...|+++..+..+|.+.+.|-....
T Consensus 39 ~v~~dd~~d~~~a~~-~~c~Li-~~-gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~ 93 (363)
T cd06381 39 SISFIDLNNHFDAVQ-EACDLM-NQ-GILALVTSTGCASAIALQSLTDAMHIPHLFIQ 93 (363)
T ss_pred eeEeecCCChHHHHH-HHHHHH-hc-CcEEEEecCChhHHHHHHHHhhCCCCCEEEee
Confidence 345677777765544 444555 45 89999999999999999999999988866543
No 269
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=28.04 E-value=4.5e+02 Score=25.42 Aligned_cols=91 Identities=12% Similarity=0.179 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++... ++-.-|..+.+-+.+...+. + .-.+.+.++ ....++|. .+..|.+..||.+|+.+......
T Consensus 25 ~~Igvv~~~-~~~~f~~~~~~gi~~~a~~~-g----~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~- 95 (330)
T PRK15395 25 TRIGVTIYK-YDDNFMSVVRKAIEKDAKAA-P----DVQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAA- 95 (330)
T ss_pred ceEEEEEec-CcchHHHHHHHHHHHHHHhc-C----CeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeccCHHHH-
Confidence 578888754 34455677776666543221 1 011222121 12344553 55556556899999987543223
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
....+.+++.+.|...+++..
T Consensus 96 ~~~l~~l~~~giPvV~vd~~~ 116 (330)
T PRK15395 96 PTVIEKARGQDVPVVFFNKEP 116 (330)
T ss_pred HHHHHHHHHCCCcEEEEcCCc
Confidence 334455667889999998753
No 270
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=27.96 E-value=73 Score=32.54 Aligned_cols=43 Identities=30% Similarity=0.439 Sum_probs=29.9
Q ss_pred HHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
.|..+++.|.+...|.++||||-.|.=+.++ +++..+.+.+.|
T Consensus 82 ~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~--Lae~~~i~vVGv 124 (347)
T COG0205 82 GRKVAAENLKKLGIDALVVIGGDGSYTGAAL--LAEEGGIPVVGV 124 (347)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCChHHHHHH--HHHhcCCcEEec
Confidence 4557777777678999999999998765543 444444555544
No 271
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.91 E-value=4.1e+02 Score=30.63 Aligned_cols=217 Identities=15% Similarity=0.111 Sum_probs=113.4
Q ss_pred cCCcEEeCcChhhHHHHHHHHHHhhCCC-e--EEEEecCCC-ceeeeecccCCcE--EEEcChhhhHhhhccccCCCCCC
Q 018062 118 KNVQIVDTTCPWVSKVWTSVEKHKKGDY-T--SIIHGKYSH-EETVATASFAGKY--IIVKNMKEAEYVCDYILGGELNG 191 (361)
Q Consensus 118 kgl~ViDATCP~V~kv~~~v~~~~~~Gy-~--IIIiG~~~H-pEV~gi~g~a~~~--ivv~~~~e~~~~~~~~~~~~~~~ 191 (361)
+|..|.| ||+.++.......++.+++- + .-+-+..++ |+|.|+.|-.+.. +-+.++--+-.+.+ +.-..-+-
T Consensus 83 LG~~i~D-TCs~~t~aleqsl~Fv~~~~~~~~~e~~c~~g~sp~v~~VIG~s~Ssvsi~vanlLrlf~ipQ-isyaSts~ 160 (878)
T KOG1056|consen 83 LGARILD-TCSRSTYALEQSLSFVRASLTSDDSEVRCPDGYSPPVVAVIGPSYSSVSIAVANLLRLFLIPQ-ISYASTSP 160 (878)
T ss_pred eeeeEee-ccCCcHHHHHhhHHHHHhcccCCCcceecCCCCCCceeEEeCCCCchHHHHHHHHHHhhcCce-eccccCCc
Confidence 5888997 79999999999888877532 2 333344555 8888887654321 11222111111000 00000011
Q ss_pred CCCcHHHHH---H-----HHH-hhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCccccccccccccc
Q 018062 192 SSSTKEAFL---E-----KFK-KAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNT 262 (361)
Q Consensus 192 ~~~~~~~~~---~-----~~~-~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nT 262 (361)
+.+|+.+|. . .++ .|+. + .-..-+.-+|++-.-.-+..+.=++++++.- +..|
T Consensus 161 ~LSdk~ry~~F~RtVP~D~~Qa~Am~---~-il~~f~W~yVstv~s~~dYGE~Gieaf~~~a-------------~~~~- 222 (878)
T KOG1056|consen 161 DLSDKTRYDYFLRTVPSDVFQAQAMV---D-ILKKFNWNYVSTVASEGDYGESGIEAFKEEA-------------AERG- 222 (878)
T ss_pred ccccchhhhceeeecCChHHHHHHHH---H-HHHHhCeeEeeehhcCccchhhhHHHHHHhH-------------HhcC-
Confidence 111111111 0 000 0000 0 0001246678877777777666666665421 1123
Q ss_pred ccHHHHH----------HHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCC--eEEeCCCCCCCCCCccccccc
Q 018062 263 ICDATQE----------RQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIP--SYWIDSEKRIGPGNKIAYKLM 330 (361)
Q Consensus 263 IC~AT~~----------RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~--t~~Ie~~~eL~~~~~~~~~~~ 330 (361)
||-|..+ =+.-+++|. ...++=+||==.+.--.++|.+-++.++.. ..+|-|..==...+......-
T Consensus 223 iCIa~s~ki~~~~~~~~~~~~l~kl~-~~~~a~vvV~F~~~~~~r~~~~aa~~~n~~g~~~wiaSd~W~~~~~~~~~~e~ 301 (878)
T KOG1056|consen 223 ICIAFSEKIYQLSIEQEFDCVLRKLL-ETPNARVVVVFCRGEDARRLLKAARRANLTGEFLWIASDGWASQNSPTEAPER 301 (878)
T ss_pred ceEEehhhcccccchhHHHHHHHHHh-hcCCCeEEEEecCcchHHHHHHHHHHhCCCcceEEEecchhhccCChhhhhhh
Confidence 6666543 356677786 467777777666777779999988888876 555655431111111111112
Q ss_pred cceeEEEeeecceEEEeehhhhhhe
Q 018062 331 VCVNILNFTCINRVIFKFQSFFINY 355 (361)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (361)
.-.+-++|----..+--|-+||-++
T Consensus 302 ~a~g~i~i~l~~~~v~~F~~y~~s~ 326 (878)
T KOG1056|consen 302 EAEGAITIKLASPQVPGFDRYFQSL 326 (878)
T ss_pred hhceeEEEEecCCcchhHHHHHHhc
Confidence 5556667666666666666666543
No 272
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=27.90 E-value=1.5e+02 Score=27.84 Aligned_cols=59 Identities=22% Similarity=0.346 Sum_probs=40.0
Q ss_pred cccccccccHHHHHHHHHHHHchh-cCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~-~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
++.+.|+-|.+... ++.+++|.. ..||+ |||...|+++..+.+++.+.+.|...+....
T Consensus 41 ~l~~~d~~~~~~~a-~~~~~~li~~~~v~~--vig~~~s~~~~~~~~~~~~~~vP~v~~~~~~ 100 (312)
T cd06333 41 ELIVLDDGSDPTKA-VTNARKLIEEDKVDA--IIGPSTTPATMAVAPVAEEAKTPMISLAPAA 100 (312)
T ss_pred EEEEecCCCCHHHH-HHHHHHHHhhCCeEE--EECCCCCHHHHHHHHHHHhcCCCEEEccCCc
Confidence 45566777765433 345666652 24555 5677778888888899989998988877644
No 273
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=27.78 E-value=3.5e+02 Score=22.32 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhC---C
Q 018062 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG---D 144 (361)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~---G 144 (361)
..+...|.+.|...++++ .+-|.+||.+=+|...-.+++ .+.++++.+. +
T Consensus 17 e~i~~~l~~~G~~~~~~~---------e~AD~iiiNTC~V~~~Ae~k~------------------~~~i~~l~~~~~~~ 69 (98)
T PF00919_consen 17 ERIASILQAAGYEIVDDP---------EEADVIIINTCTVRESAEQKS------------------RNRIRKLKKLKKPG 69 (98)
T ss_pred HHHHHHHHhcCCeeeccc---------ccCCEEEEEcCCCCcHHHHHH------------------HHHHHHHHHhcCCC
Confidence 456678899999988752 245789999888876665444 4445555444 4
Q ss_pred CeEEEEe
Q 018062 145 YTSIIHG 151 (361)
Q Consensus 145 y~IIIiG 151 (361)
-.|++.|
T Consensus 70 ~~ivv~G 76 (98)
T PF00919_consen 70 AKIVVTG 76 (98)
T ss_pred CEEEEEe
Confidence 6677666
No 274
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.66 E-value=99 Score=25.15 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=40.4
Q ss_pred cccHHHHH-HHHHHHHchhcCCcEEEEEc-CCCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 262 TICDATQE-RQDAMYKMVEEKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 262 TIC~AT~~-RQ~A~~eLa~~~vD~miVIG-GknSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
.....+.+ +...+..+ .+-|++|++. +.++..+..+++.+++.|.++..|.+..+
T Consensus 35 ~~~~~~~~~~~~~~~~~--~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 35 VISYEAGEFFHGPLENL--DPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp EEEEEHHHHHTTGGGGC--STTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred eeccchHHHhhhhcccc--cccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 34444444 44445555 4689999998 57778888889999999999999987755
No 275
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=27.45 E-value=2e+02 Score=20.77 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=24.8
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHH
Q 018062 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRL 74 (361)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L 74 (361)
+.++-+...|+| ++|..+.++..+.++ +--|..=++-.++...+++
T Consensus 3 v~~f~~~~C~~C---~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~ 48 (67)
T cd02973 3 IEVFVSPTCPYC---PDAVQAANRIAALNP-NISAEMIDAAEFPDLADEY 48 (67)
T ss_pred EEEEECCCCCCc---HHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHc
Confidence 456678999999 444445544444332 2222222455666555444
No 276
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.44 E-value=2.8e+02 Score=27.76 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=65.0
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec--C--Cccc-cccccccCCC
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--V--EEGK-KQFDVVNKGD 98 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~--~--~~~~-~~l~el~~g~ 98 (361)
.|-.+...|.-||.|++.|++.+.+... ..+|-+= +.|.......-+.|+..|. + ++.. +.++.+ .+.
T Consensus 177 D~vLIkdNHi~~~G~i~~av~~~r~~~~---~~kIeVE---vetleea~eA~~aGaDiImLDnmspe~l~~av~~~-~~~ 249 (294)
T PRK06978 177 DGILIKENHIAAAGGVGAALDAAFALNA---GVPVQIE---VETLAQLETALAHGAQSVLLDNFTLDMMREAVRVT-AGR 249 (294)
T ss_pred ceEEEeHHHHHHhCCHHHHHHHHHHhCC---CCcEEEE---cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh-cCC
Confidence 4777779999999999999999987543 2345444 3466666666678877665 1 0000 011111 244
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcChh
Q 018062 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (361)
Q Consensus 99 ~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~ 129 (361)
.++--|=|++++-.....+.|+.+|....++
T Consensus 250 ~~lEaSGGIt~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 250 AVLEVSGGVNFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 4555666799999888888888888777664
No 277
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=27.42 E-value=4.3e+02 Score=23.74 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=46.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++...+ +-.-|.++.+-+.+... +.+ -.+..+++ ....++|. .++.+.+..+|.+|+.+...+. .
T Consensus 2 igvv~~~~-~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~---~ 69 (265)
T cd06299 2 IGVIVPDI-RNPYFASLATAIQDAAS-AAG-----YSTIIGNS--DENPETENRYLDNLLSQRVDGIIVVPHEQSA---E 69 (265)
T ss_pred EEEEecCC-CCccHHHHHHHHHHHHH-HcC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh---H
Confidence 45554332 23445666666655332 222 12333332 22344553 4445555689999999865432 2
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
.++-+++.+.|...+.+.
T Consensus 70 ~~~~l~~~~ipvV~~~~~ 87 (265)
T cd06299 70 QLEDLLKRGIPVVFVDRE 87 (265)
T ss_pred HHHHHHhCCCCEEEEecc
Confidence 355666788999888764
No 278
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=27.38 E-value=2.9e+02 Score=23.72 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=11.1
Q ss_pred HHHHHhhC-CCeEEEEecC
Q 018062 136 SVEKHKKG-DYTSIIHGKY 153 (361)
Q Consensus 136 ~v~~~~~~-Gy~IIIiG~~ 153 (361)
.++++.++ ...++.+||.
T Consensus 153 ~~~~~~~~~~~~~i~iGD~ 171 (188)
T TIGR01489 153 VIHKLSEPKYQHIIYIGDG 171 (188)
T ss_pred HHHHHHhhcCceEEEECCC
Confidence 44444444 6778888864
No 279
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=27.10 E-value=1.7e+02 Score=25.96 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=32.8
Q ss_pred cCCcEEEEEc-CCCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 280 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 280 ~~vD~miVIG-GknSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
.+=|++|++- +-+|.++..+++.|++.|.++..|.+..
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999987 4777899999999999999999998764
No 280
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.01 E-value=4.6e+02 Score=23.45 Aligned_cols=86 Identities=20% Similarity=0.280 Sum_probs=45.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++... ++..-|..+.+-+++... +++- ++.++++ ....+.|. .++.+.+..+|.+++.+...+ .. .
T Consensus 2 I~vi~~~-~~~~~~~~~~~g~~~~a~-~~g~-----~~~~~~~--~~~~~~~~~~i~~~~~~~vdgiii~~~~~~-~~-~ 70 (268)
T cd06289 2 IGLVIND-LTNPFFAELAAGLEEVLE-EAGY-----TVFLANS--GEDVERQEQLLSTMLEHGVAGIILCPAAGT-SP-D 70 (268)
T ss_pred EEEEecC-CCcchHHHHHHHHHHHHH-HcCC-----eEEEecC--CCChHHHHHHHHHHHHcCCCEEEEeCCCCc-cH-H
Confidence 4455533 333456666666665332 2221 2222211 11233443 344454567999999975322 22 3
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
.++.+++.|.|...+++.
T Consensus 71 ~~~~~~~~~ipvV~~~~~ 88 (268)
T cd06289 71 LLKRLAESGIPVVLVARE 88 (268)
T ss_pred HHHHHHhcCCCEEEEecc
Confidence 556677888999888765
No 281
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=26.94 E-value=1.1e+02 Score=30.46 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=45.6
Q ss_pred eEEEEEcCCCChH-HHHHHHHHHHHHHhhhcCcccccccccccc-cccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCch
Q 018062 219 KVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFN-TICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 219 kv~vvsQTT~s~~-~~~~I~~~l~~~~~~~~~~~~~~~~~~v~n-TIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSN 295 (361)
|+.+|+-..+... -++.+.+.|++. +.++.+|+ .--.+|..-= +++..+....+|++|-|||-..-.
T Consensus 23 r~lvVt~~~~~~~~~~~~v~~~L~~~----------~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D 92 (366)
T PF00465_consen 23 RVLVVTDPSLSKSGLVDRVLDALEEA----------GIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMD 92 (366)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHHT----------TCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHH
T ss_pred CEEEEECchHHhCccHHHHHHHHhhC----------ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCc
Confidence 6777765544433 456666666441 12233333 2222222222 333333345799999999999999
Q ss_pred hHHHHHHHHhc
Q 018062 296 TSHLQEIAEDR 306 (361)
Q Consensus 296 T~kL~eia~~~ 306 (361)
+-|.+.+....
T Consensus 93 ~aK~va~~~~~ 103 (366)
T PF00465_consen 93 AAKAVALLLAN 103 (366)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHhhccC
Confidence 99999888764
No 282
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.89 E-value=4.6e+02 Score=24.31 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=46.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCccccccccc-ccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFI-SFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~-v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
||+++..+ .+..-|.++..-+.+...+ .+ -++. +++ .......| +.+..+.++.+|.+++.+...+. +
T Consensus 1 ~i~~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~-~ 70 (294)
T cd06316 1 KAAIVMHT-SGSDWSNAQVRGAKDEFAK-LG-----IEVVATTD--AQFDPAKQVADIETTISQKPDIIISIPVDPVS-T 70 (294)
T ss_pred CeEEEecC-CCChHHHHHHHHHHHHHHH-cC-----CEEEEecC--CCCCHHHHHHHHHHHHHhCCCEEEEcCCCchh-h
Confidence 45655533 3334456666666553322 11 1121 111 12233444 44445444689999987533221 2
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
...++.+.+.|.|...+++.
T Consensus 71 ~~~i~~~~~~~iPvV~~~~~ 90 (294)
T cd06316 71 AAAYKKVAEAGIKLVFMDNV 90 (294)
T ss_pred hHHHHHHHHcCCcEEEecCC
Confidence 45556677888999888764
No 283
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=26.88 E-value=3.3e+02 Score=26.88 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhcCccccccccccccccc-HHHHHHH-HHHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~-~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ-~A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|+....... -++++.+.|++. .++.+++.++ +.|.+-= ++++.+.+..+|++|-|||-..-
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-----------~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 91 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-----------IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAI 91 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-----------CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 47777775544332 456666666531 1234566555 2333222 23333323569999999999999
Q ss_pred hhHHHHHHHHh-----cCCCeEEeCCC
Q 018062 295 NTSHLQEIAED-----RGIPSYWIDSE 316 (361)
Q Consensus 295 NT~kL~eia~~-----~~~~t~~Ie~~ 316 (361)
.+-|.+.+... .+.|-..|-|-
T Consensus 92 D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 92 DAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred HHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 99987655322 23466666654
No 284
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=26.86 E-value=2e+02 Score=28.99 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=45.4
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcCccccccccccccccc-HHHHHHHHHHH-HchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQDAMY-KMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~-~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ~A~~-eLa~~~vD~miVIGGknSS 294 (361)
+++.+|+-..... .-++++.+.|++. +.++.+|+.+- ++|.+-=+.+. .+...++|++|-|||-.+-
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~----------~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~i 98 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEA----------GIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPH 98 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHc----------CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHH
Confidence 4788887655543 4566777776541 11234454322 22222222222 2223479999999999999
Q ss_pred hhHHHHHHHHh
Q 018062 295 NTSHLQEIAED 305 (361)
Q Consensus 295 NT~kL~eia~~ 305 (361)
.+.|...+.-.
T Consensus 99 D~aK~ia~~~~ 109 (377)
T cd08176 99 DCAKAIGIVAT 109 (377)
T ss_pred HHHHHHHHHHh
Confidence 99998776533
No 285
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=26.79 E-value=84 Score=33.33 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=50.0
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcC
Q 018062 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKN 173 (361)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~kgl~V--iDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~-~~ivv~~ 173 (361)
+.++|+-.--+...+.+.|+++|..+ ||.- .+.++++.++|+. +++||..+||+---.|... +++++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d-------~~~~~~~~~~g~~-~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETS-------RTRVDELRERGIR-AVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHCCCe-EEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 55788888888999999999988655 6653 3445666667866 6899999999875444332 4555543
Q ss_pred hh
Q 018062 174 MK 175 (361)
Q Consensus 174 ~~ 175 (361)
.+
T Consensus 490 ~~ 491 (558)
T PRK10669 490 PN 491 (558)
T ss_pred CC
Confidence 33
No 286
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=26.59 E-value=2.5e+02 Score=30.10 Aligned_cols=44 Identities=7% Similarity=0.001 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 018062 109 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (361)
Q Consensus 109 ~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~ 154 (361)
......+++.|+.+.....|.- | .+.++++.++|+.++.+||.-
T Consensus 433 ~~a~~ia~~lgi~~~~~~~p~~-K-~~~v~~l~~~~~~v~~VGDg~ 476 (562)
T TIGR01511 433 KTAKAVAKELGINVRAEVLPDD-K-AALIKELQEKGRVVAMVGDGI 476 (562)
T ss_pred HHHHHHHHHcCCcEEccCChHH-H-HHHHHHHHHcCCEEEEEeCCC
Confidence 4456666667777665555642 2 356777778999999999864
No 287
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=26.53 E-value=1.2e+02 Score=28.90 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=43.9
Q ss_pred EEEcCCCCCH--------HHHHHHHhcCCcEEeCcChh--------------hHHHHHHHHHHhhCCCeEEEEecCCCce
Q 018062 100 VVLPAFGAAV--------EEMVTLNNKNVQIVDTTCPW--------------VSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (361)
Q Consensus 100 VIIrAHGv~~--------~v~~~l~~kgl~ViDATCP~--------------V~kv~~~v~~~~~~Gy~IIIiG~~~HpE 157 (361)
-+||-|.|+| ++.+.|.+.|+...=++=|. -.+..+..+.+..+|+.|+++| ..|..
T Consensus 2 ~lirleDVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHG-YtHq~ 80 (243)
T PF10096_consen 2 ALIRLEDVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHG-YTHQY 80 (243)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEe-cceec
Confidence 3577777777 55666777777653333333 4577788888899999999999 66766
Q ss_pred eeeecc
Q 018062 158 TVATAS 163 (361)
Q Consensus 158 V~gi~g 163 (361)
..+..|
T Consensus 81 ~~~~sg 86 (243)
T PF10096_consen 81 GNSVSG 86 (243)
T ss_pred CCCccc
Confidence 444444
No 288
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.50 E-value=4.9e+02 Score=26.52 Aligned_cols=92 Identities=10% Similarity=0.109 Sum_probs=54.1
Q ss_pred cccccCHHHHHHHHH--cCcEEecCCccccccccccCCCEEEEcCCCCCH--HHHHHHHhcCCcEEe---C-----cChh
Q 018062 62 NEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKNVQIVD---T-----TCPW 129 (361)
Q Consensus 62 G~iIHN~~Vv~~L~~--~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~--~v~~~l~~kgl~ViD---A-----TCP~ 129 (361)
-+.-.++...+.|++ .|+.+..... +.+.+.+-|.||++. |+|+ ..+..++++|+.|+. . .+|.
T Consensus 35 ~D~~~~~~~~~~l~~~~~g~~~~~~~~---~~~~~~~~d~vV~sp-~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~ 110 (448)
T PRK03803 35 MDSREQPPGLDTLAREFPDVELRCGGF---DCELLVQASEIIISP-GLALDTPALRAAAAMGIEVIGDIELFAREAKAPV 110 (448)
T ss_pred EeCCCCchhHHHHHhhcCCcEEEeCCC---ChHHhcCCCEEEECC-CCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCE
Confidence 444445555567887 4998864211 122233446565555 9985 367788899998873 0 1222
Q ss_pred h---------HHHHHHHHHHhhCCCeEEEEecCCCce
Q 018062 130 V---------SKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (361)
Q Consensus 130 V---------~kv~~~v~~~~~~Gy~IIIiG~~~HpE 157 (361)
| +-..-...-+...|+.+.+-|.-+.|-
T Consensus 111 I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 111 IAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred EEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 2 223334444566788888888766663
No 289
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=26.41 E-value=1.2e+02 Score=28.52 Aligned_cols=75 Identities=8% Similarity=-0.021 Sum_probs=51.8
Q ss_pred ccccccCCCEEEEcCCCCCHHHHHHHHh---cCCcEEeCcChhhHHHHHHHHHHhhCCC-eEEEEecCCCceeeeecccC
Q 018062 90 QFDVVNKGDVVVLPAFGAAVEEMVTLNN---KNVQIVDTTCPWVSKVWTSVEKHKKGDY-TSIIHGKYSHEETVATASFA 165 (361)
Q Consensus 90 ~l~el~~g~~VIIrAHGv~~~v~~~l~~---kgl~ViDATCP~V~kv~~~v~~~~~~Gy-~IIIiG~~~HpEV~gi~g~a 165 (361)
.|.++++-|.+.|--=|--+++.+.+.+ .|-.+| +++-.........+.+.+.|+ .++=+.-..--++-+-..|.
T Consensus 96 ~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV-~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~lg~~~~~~ 174 (187)
T COG2242 96 ALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLV-ANAITLETLAKALEALEQLGGREIVQVQISRGKPLGGGTMFR 174 (187)
T ss_pred hhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEE-EEeecHHHHHHHHHHHHHcCCceEEEEEeecceeccCeeEee
Confidence 3455555577777766777788777766 566777 788889999999999999999 66666544433333333344
No 290
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.32 E-value=1.3e+02 Score=24.67 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=32.1
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|+|.- -+|.++.+.++.|++.|.++.-|.+..+
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 57899888875 5667788999999999999999988643
No 291
>PRK03202 6-phosphofructokinase; Provisional
Probab=26.28 E-value=98 Score=31.08 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=32.7
Q ss_pred HHHHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEe
Q 018062 267 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 313 (361)
Q Consensus 267 T~~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~I 313 (361)
...++.+++.|.+...|.+++|||-.|-.+. +|+| .+.+...|
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e----~~i~vigi 122 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE----HGIPVIGL 122 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh----cCCcEEEe
Confidence 4678888888876789999999999887665 5554 46666655
No 292
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.28 E-value=1.4e+02 Score=29.50 Aligned_cols=100 Identities=9% Similarity=0.097 Sum_probs=63.3
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCC-cccccccc---ccCCCE
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE-EGKKQFDV---VNKGDV 99 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~-~~~~~l~e---l~~g~~ 99 (361)
.+-.+-..|.-||.|+..|++.+.+.. ++.+ .|==+||...+....+.|+.++.=. -+.+.+.+ ...+..
T Consensus 161 d~ilikdnHi~~~g~v~~av~~~r~~~---~~~~---I~VEv~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~~~~i 234 (277)
T PRK05742 161 DAFLIKENHIAACGGIAQAVAAAHRIA---PGKP---VEVEVESLDELRQALAAGADIVMLDELSLDDMREAVRLTAGRA 234 (277)
T ss_pred ccEEecHHHHHHhCCHHHHHHHHHHhC---CCCe---EEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCC
Confidence 466778999999999999988776642 2222 4555899988877778888776421 01111111 111233
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcChh
Q 018062 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (361)
Q Consensus 100 VIIrAHGv~~~v~~~l~~kgl~ViDATCP~ 129 (361)
.++-+=|++++-.+.+.+-|...|-..+++
T Consensus 235 ~leAsGGIt~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 235 KLEASGGINESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred cEEEECCCCHHHHHHHHHcCCCEEEEChhh
Confidence 455555788777777777777777666553
No 293
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=26.25 E-value=66 Score=28.61 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=46.9
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhc-CCcEEeCcChhhHHHHHHHHHHhhC-CCeEEEEecCCCceeeeecc
Q 018062 94 VNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATAS 163 (361)
Q Consensus 94 l~~g~~VIIrAHGv~~~v~~~l~~k-gl~ViDATCP~V~kv~~~v~~~~~~-Gy~IIIiG~~~HpEV~gi~g 163 (361)
+++|++|.+-+-=+...+.+.|..+ ++.|| +.. -..+..+.+. +.++++.|=.-+|+..++.|
T Consensus 17 I~~~~~Ifld~GtT~~~la~~L~~~~~ltVv-Tns------l~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G 81 (161)
T PF00455_consen 17 IEDGDTIFLDSGTTTLELAKYLPDKKNLTVV-TNS------LPIANELSENPNIEVILLGGEVNPKSLSFVG 81 (161)
T ss_pred CCCCCEEEEECchHHHHHHHHhhcCCceEEE-ECC------HHHHHHHHhcCceEEEEeCCEEEcCCCcEEC
Confidence 3568888888887888888888888 88888 333 3444555554 89999999777777777766
No 294
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=26.22 E-value=67 Score=35.15 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=43.1
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHHHhcCC---CeEEeC--CCCCCCCCCcccccccc--ceeEEEeeecce
Q 018062 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGI---PSYWID--SEKRIGPGNKIAYKLMV--CVNILNFTCINR 343 (361)
Q Consensus 280 ~~vD~miVIGGknSSNT~kL~eia~~~~~---~t~~Ie--~~~eL~~~~~~~~~~~~--~~~~~~~~~~~~ 343 (361)
.-.+.+++||++.|.-|+++.+.|.+.=. -..||+ +++|+..+...--.-+. +.+..-.-|-++
T Consensus 698 ~glk~vvlvGd~~s~d~~~~vs~~~s~yipn~~vihidpsd~ee~s~~~ls~ka~m~~~g~k~tayvC~~~ 768 (786)
T KOG2244|consen 698 PGLKQVVLVGDKSSPDLTNMVSAAHSVYIPNKTVIHIDPSDEEEFSEEHLSNKAEMAKNGEKVTAYVCQHF 768 (786)
T ss_pred cCcceEEEECCCCChHHHHHHHHHHHhcCCcceEEEeCCCCHHHHHhccCchHHHHHhcCCCceEEEecCc
Confidence 34789999999999999999999988543 368998 77776655332222233 455444444443
No 295
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=26.21 E-value=1.7e+02 Score=27.96 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=39.2
Q ss_pred EcCCCCCHHHH-HHHHhcCCcEEe--CcChhhHHHHHHHHHHhhCCCeEEEEecC
Q 018062 102 LPAFGAAVEEM-VTLNNKNVQIVD--TTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (361)
Q Consensus 102 IrAHGv~~~v~-~~l~~kgl~ViD--ATCP~V~kv~~~v~~~~~~Gy~IIIiG~~ 153 (361)
...|+++.+.. .+++..|+.++- ..|+.-....+..+-+.+.|-+.++.|+-
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI 94 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAI 94 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCc
Confidence 47799999886 677779998765 77776666666666666668888888864
No 296
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=26.18 E-value=77 Score=30.39 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=24.2
Q ss_pred EEeCcChhhHHHHHHHHHHhhCC-CeEEEE
Q 018062 122 IVDTTCPWVSKVWTSVEKHKKGD-YTSIIH 150 (361)
Q Consensus 122 ViDATCP~V~kv~~~v~~~~~~G-y~IIIi 150 (361)
..|-+|||=+|.|..++.+.+.| .++.++
T Consensus 124 FtDp~CpyC~kl~~~l~~~~~~g~V~v~~i 153 (251)
T PRK11657 124 FADPNCPYCKQFWQQARPWVDSGKVQLRHI 153 (251)
T ss_pred EECCCChhHHHHHHHHHHHhhcCceEEEEE
Confidence 37999999999999999998887 555544
No 297
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=25.99 E-value=2.4e+02 Score=28.92 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=48.1
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhcCccccccccccccc-ccHHHHHH-HHHHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNT-ICDATQER-QDAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~-~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nT-IC~AT~~R-Q~A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|+..++... .++++.+.|++. +.++.+|+. -.++|.+- +++++.+.+.++|++|-|||-..-
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~----------gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAA----------GINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHc----------CCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 57888887665543 467777777541 112333432 12333332 233333334579999999999999
Q ss_pred hhHHHHHHHHhc
Q 018062 295 NTSHLQEIAEDR 306 (361)
Q Consensus 295 NT~kL~eia~~~ 306 (361)
.+-|...+....
T Consensus 94 D~AKaia~~~~~ 105 (414)
T cd08190 94 DTAKAANLYASH 105 (414)
T ss_pred HHHHHHHHHHhC
Confidence 999988776543
No 298
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=25.97 E-value=1e+02 Score=30.41 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=37.3
Q ss_pred ccccccccc----HHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 256 HFISFNTIC----DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 256 ~~~v~nTIC----~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
++.+.||-| .....=+.+.+.+.+ -.+..|||...|+-+.....+|...+.|..
T Consensus 44 ~~~~~D~~~~~~~~~~~a~~~a~~~~~~--~~v~aiiGp~~S~~~~av~~~~~~~~ip~I 101 (396)
T cd06373 44 TLVFEDSECKCGCSESEAPLVAVDLYFQ--HKPDAFLGPGCEYAAAPVARFAAHWNVPVL 101 (396)
T ss_pred EEEEecCccccccchhhhHHHHHHHHhc--cCCeEEECCCccchhHHHHHHHhcCCCceE
Confidence 455778877 333333344444432 256778999999999999999999887754
No 299
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=25.92 E-value=1.8e+02 Score=28.84 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=31.9
Q ss_pred HHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 272 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 272 ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
++++.+....+|++|-|||-..-.+-|.+... .+.|-..|-|..
T Consensus 68 ~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~--~~~p~i~IPTta 111 (337)
T cd08177 68 AAVAAAREAGADGIVAIGGGSTIDLAKAIALR--TGLPIIAIPTTL 111 (337)
T ss_pred HHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHH--hcCCEEEEcCCc
Confidence 33333323579999999999999999987654 367777777654
No 300
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=25.88 E-value=62 Score=31.36 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=15.9
Q ss_pred eEEEEEcCC--CChHHHHHHHHHHHH
Q 018062 219 KVGIANQTT--MLKGETEEIGKLVEK 242 (361)
Q Consensus 219 kv~vvsQTT--~s~~~~~~I~~~l~~ 242 (361)
||+++..+. -..+.++++.++|++
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~ 26 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLE 26 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHh
Confidence 467777766 345667777777766
No 301
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=25.85 E-value=3.5e+02 Score=25.97 Aligned_cols=47 Identities=11% Similarity=0.315 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhC-CCCceEEecccc-cCHHHHH----HHHHcCcE----EecCC
Q 018062 39 VERAVQIAYEARKQF-PEEKIWITNEII-HNPTVNK----RLEEMAVQ----NIPVE 85 (361)
Q Consensus 39 V~RAI~~a~~~~~~~-~~~~Vy~lG~iI-HN~~Vv~----~L~~~GV~----~v~~~ 85 (361)
+.+|+++..+++++. ++.-+|.++..+ |.-.+.. .|++.||. .++..
T Consensus 112 t~~Al~lil~~lk~~~~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~ 168 (211)
T COG2454 112 TDKALDLLLEFLKDVEPKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNA 168 (211)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCc
Confidence 578999999988874 445689999999 5554433 44556666 55543
No 302
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.81 E-value=1.6e+02 Score=28.15 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHHchhcCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 263 ICDATQERQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 263 IC~AT~~RQ~A~~eLa~~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
.|.....-+.....+. ++=|++|++.- .++.++..+++.|++.|.++..|.+..+=+-.
T Consensus 170 ~~~~d~~~~~~~~~~~-~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la 229 (292)
T PRK11337 170 QAYDDAHIMLMSAALL-QEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIA 229 (292)
T ss_pred EEcCCHHHHHHHHhcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 3443333343333454 57899888876 46778999999999999999999887654444
No 303
>PRK10537 voltage-gated potassium channel; Provisional
Probab=25.62 E-value=1.3e+02 Score=31.02 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=50.6
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC-cEEEEcC
Q 018062 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKN 173 (361)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~kgl~V--iDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~-~~ivv~~ 173 (361)
+-.||+-.--+...+.++|+++|..+ ||.- ..++..++|+. ++.||..++|+---.|... +++++..
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d---------~~~~~~~~g~~-vI~GD~td~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPL---------GLEHRLPDDAD-LIPGDSSDSAVLKKAGAARARAILALR 310 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECc---------hhhhhccCCCc-EEEeCCCCHHHHHhcCcccCCEEEEcC
Confidence 44677877778899999999888654 6632 23445567776 6899999998875544332 5677766
Q ss_pred hhhhHhh
Q 018062 174 MKEAEYV 180 (361)
Q Consensus 174 ~~e~~~~ 180 (361)
.+|.+++
T Consensus 311 ~dD~~Nl 317 (393)
T PRK10537 311 DNDADNA 317 (393)
T ss_pred CChHHHH
Confidence 6665543
No 304
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=25.54 E-value=1.1e+02 Score=34.42 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=42.7
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccC-HHHHHHHHHcCcEEec
Q 018062 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHN-PTVNKRLEEMAVQNIP 83 (361)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN-~~Vv~~L~~~GV~~v~ 83 (361)
+-..|.+||+.+.++.++. ++++-+.|++..+ |.....|-.+|+.++.
T Consensus 723 ~hPav~~ai~~vi~aa~~~-g~~vgicge~a~~~p~~~~~l~~~G~~~ls 771 (795)
T PRK06464 723 RNPAVKKLISMAIKAAKKA-GKYVGICGQAPSDHPDFAEWLVEEGIDSIS 771 (795)
T ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEcCCCCCCcHHHHHHHHHCCCCEEE
Confidence 4579999999998888765 6799999999998 9999999999999885
No 305
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=25.48 E-value=2.2e+02 Score=26.60 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=44.9
Q ss_pred ccchhHHHHHHHcCCcccccceEEEEeCCCCCc----ccHHHHHHHHHHHHhhCCCCceEEecccc-----cCHHHHHHH
Q 018062 4 EYTSDIIKKLKENGFEYTWGNVKVKLAESYGFC----WGVERAVQIAYEARKQFPEEKIWITNEII-----HNPTVNKRL 74 (361)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC----~GV~RAI~~a~~~~~~~~~~~Vy~lG~iI-----HN~~Vv~~L 74 (361)
.|...+.+.+++.|+....-++. +..|. .|...+++.+.+.+. .+.|..+++.- .-|.+++.|
T Consensus 139 ~~~~~~~~~l~~~Gy~~v~w~v~-----~~Dw~~~~~~~~~~~~~~v~~~~~---~g~IiLlHd~~~~t~~aL~~ii~~l 210 (224)
T TIGR02884 139 VFSERTLAYTKELGYYTVFWSLA-----FKDWKVDEQPGWQYAYKQIMKKIH---PGAILLLHAVSKDNAEALDKIIKDL 210 (224)
T ss_pred CcCHHHHHHHHHcCCcEEecccc-----CcccCCCCCCCHHHHHHHHHhcCC---CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 46677888888888765432221 22222 244555554433332 35799998742 346788999
Q ss_pred HHcCcEEec
Q 018062 75 EEMAVQNIP 83 (361)
Q Consensus 75 ~~~GV~~v~ 83 (361)
+++|..++.
T Consensus 211 k~~Gy~fvt 219 (224)
T TIGR02884 211 KEQGYTFKS 219 (224)
T ss_pred HHCCCEEEE
Confidence 999999984
No 306
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=25.37 E-value=2.7e+02 Score=26.29 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCceEEec---ccccCHHHHHHHHHcCcEEecCCcccccc---ccccCCCEEE-EcCCCCCHHH-
Q 018062 40 ERAVQIAYEARKQFPEEKIWITN---EIIHNPTVNKRLEEMAVQNIPVEEGKKQF---DVVNKGDVVV-LPAFGAAVEE- 111 (361)
Q Consensus 40 ~RAI~~a~~~~~~~~~~~Vy~lG---~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l---~el~~g~~VI-IrAHGv~~~v- 111 (361)
...++.+-+.+.+ .++||++| .-.-=.+...+|...|+.+..-.+..... ..+.++|.|| |+.-|-++++
T Consensus 115 ~~~i~~~~~~i~~--a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~~ 192 (284)
T PRK11302 115 PSAINRAVDLLTQ--AKKISFFGLGASAAVAHDAQNKFFRFNVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTKSLV 192 (284)
T ss_pred HHHHHHHHHHHHc--CCeEEEEEcchHHHHHHHHHHHHHhcCCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCCHHHH
Q ss_pred --HHHHHhcCCcEE
Q 018062 112 --MVTLNNKNVQIV 123 (361)
Q Consensus 112 --~~~l~~kgl~Vi 123 (361)
.+.++++|..||
T Consensus 193 ~~~~~ak~~g~~vI 206 (284)
T PRK11302 193 ELAQLARENGATVI 206 (284)
T ss_pred HHHHHHHHcCCeEE
No 307
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=25.08 E-value=1.3e+02 Score=28.51 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCC
Q 018062 264 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 264 C~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
|.+..-. .++.+|. . -.+..|||+..|+.+..+..+|.+.+.|-+....
T Consensus 46 ~~~~~a~-~~a~~li-~-~~V~aiiG~~~S~~~~av~~i~~~~~ip~is~~~ 94 (324)
T cd06368 46 NDSFELT-NKACDLL-S-QGVAAIFGPSSSSSANTVQSICDALEIPHITTSW 94 (324)
T ss_pred CChHHHH-HHHHHHH-h-cCcEEEECCCCHHHHHHHHHHHhccCCCcEEecC
Confidence 5554443 4455565 3 3577789999999999999999999988655443
No 308
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=25.00 E-value=1.1e+02 Score=32.25 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=57.8
Q ss_pred HHHHHHHcCcEEecC---Cccc--------cccccccC---CC-EEEEcCCCCCHHHHHHHHhcCCcEEeCcC-------
Q 018062 70 VNKRLEEMAVQNIPV---EEGK--------KQFDVVNK---GD-VVVLPAFGAAVEEMVTLNNKNVQIVDTTC------- 127 (361)
Q Consensus 70 Vv~~L~~~GV~~v~~---~~~~--------~~l~el~~---g~-~VIIrAHGv~~~v~~~l~~kgl~ViDATC------- 127 (361)
.++.|+++|+.++.+ ++.. ..+|...+ |+ .+=-..-|+.|.-.+++.++|+.+.|--=
T Consensus 82 Ei~~L~~~g~~~~~~rL~Is~~ahlIlpyH~~lD~~~E~~~~~~kIGTTgrGIGPaY~DKv~R~giRv~DL~d~~~l~~k 161 (430)
T COG0104 82 EIEELEERGVDVVRDRLRISDRAHLILPYHIELDRAREKALGKKKIGTTGRGIGPAYEDKVARRGIRVGDLLDPETLREK 161 (430)
T ss_pred HHHHHHhcCCccccccEEEccCcccccHHHHHHhhhhhhhcCCCcccCCCCccChhhhhhHhhhhhhhhhhcCHHHHHHH
Confidence 368889999986632 0000 01222221 22 12245568999999999999999977654
Q ss_pred --------------------------------------hhhHHHHHHHHHHhhCCCeEEEEe
Q 018062 128 --------------------------------------PWVSKVWTSVEKHKKGDYTSIIHG 151 (361)
Q Consensus 128 --------------------------------------P~V~kv~~~v~~~~~~Gy~IIIiG 151 (361)
|+|.-+...+.++.++|..|++=|
T Consensus 162 le~~~~~~n~~l~~~y~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~a~~~g~~VLfEG 223 (430)
T COG0104 162 LERLLEYKNFQLVKYYGAEAVDFEDILDEYYEYAERLKPYVTDVSVLLNDALDAGKRVLFEG 223 (430)
T ss_pred HHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHcCCeEEEEc
Confidence 999999999999999999999877
No 309
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=24.89 E-value=2.4e+02 Score=29.99 Aligned_cols=119 Identities=23% Similarity=0.239 Sum_probs=70.3
Q ss_pred cccchhHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCC----CceEEecccccCHH----HHHHH
Q 018062 3 QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPE----EKIWITNEIIHNPT----VNKRL 74 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~----~~Vy~lG~iIHN~~----Vv~~L 74 (361)
.||.++|+++.-+.-+.--..-.+|.=|=+ =.|-++.+-++.++++. .--|+.+| ||+=+ ..+.|
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRiFDAlN------D~RNl~~ai~a~kk~G~h~q~~i~YT~sP-vHt~e~yv~~akel 165 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRIFDALN------DVRNLKTAIKAAKKHGAHVQGTISYTTSP-VHTLEYYVELAKEL 165 (472)
T ss_pred cCCchHHHHHHHHHHHhcCCcEEEechhcc------chhHHHHHHHHHHhcCceeEEEEEeccCC-cccHHHHHHHHHHH
Confidence 489999988765432221112233333311 23446666666665532 13688899 89853 56778
Q ss_pred HHcCcEEec--CCccc-------cccccccC--CCEEEEcCC---CCCHHHHHHHHhcCCcEEeCcCh
Q 018062 75 EEMAVQNIP--VEEGK-------KQFDVVNK--GDVVVLPAF---GAAVEEMVTLNNKNVQIVDTTCP 128 (361)
Q Consensus 75 ~~~GV~~v~--~~~~~-------~~l~el~~--g~~VIIrAH---Gv~~~v~~~l~~kgl~ViDATCP 128 (361)
.++|+..+- +-.|. +.+..+.+ +=.|-+-.| |+++-.|-++-+.|..+||+.|.
T Consensus 166 ~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAis 233 (472)
T COG5016 166 LEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTAIS 233 (472)
T ss_pred HHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhhhc
Confidence 889986443 21111 01111111 223556566 88899999999999999999873
No 310
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=24.80 E-value=4.8e+02 Score=27.86 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=68.1
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCH-HHHHHHHHcCcEEecCCccc--cccccccCCCEE
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNP-TVNKRLEEMAVQNIPVEEGK--KQFDVVNKGDVV 100 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~-~Vv~~L~~~GV~~v~~~~~~--~~l~el~~g~~V 100 (361)
+-+|+.|+. -+.|-+++.+...+..++.|.---.++--+ .+++.|+++|+.+++++=+. =+++.-+ .+.+
T Consensus 78 Gg~vy~A~~------aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLGE~IlQl~~~~-PsHI 150 (459)
T COG1139 78 GGHVYFAKD------AEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLGELILQLAGEP-PSHI 150 (459)
T ss_pred CCEEEEeCC------HHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEEEccHHHHHHHhcCCC-Ccce
Confidence 457888976 589999999988865455555443333322 35678999999999863111 0122222 3568
Q ss_pred EEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCC
Q 018062 101 VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145 (361)
Q Consensus 101 IIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy 145 (361)
|.+|=.-+.+...++-+..+....- +-...+-..|+++.++-|
T Consensus 151 V~PAlH~~reqIa~if~ekl~~~~~--~~~eel~~~aR~~lR~kf 193 (459)
T COG1139 151 VAPALHKNREQIAEIFKEKLGYEGE--DTPEELTAAAREFLREKF 193 (459)
T ss_pred eccccccCHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHHH
Confidence 8888777777665554444432222 445555566666655433
No 311
>PRK10329 glutaredoxin-like protein; Provisional
Probab=24.79 E-value=3.4e+02 Score=21.25 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=47.1
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC
Q 018062 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (361)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrA 104 (361)
++++-....+||..++++++. . +-=|..=++=.+|...+.|+..|...+.- +--|+..+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~~~~~~~g~~~vPv---------v~i~~~~~~-- 62 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAAETLRAQGFRQLPV---------VIAGDLSWS-- 62 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCCCcCE---------EEECCEEEe--
Confidence 456667899999999888742 1 22355557777898888888877655531 112343333
Q ss_pred CCCCHHHHHHHH
Q 018062 105 FGAAVEEMVTLN 116 (361)
Q Consensus 105 HGv~~~v~~~l~ 116 (361)
|-.|+.+++|.
T Consensus 63 -Gf~~~~l~~~~ 73 (81)
T PRK10329 63 -GFRPDMINRLH 73 (81)
T ss_pred -cCCHHHHHHHH
Confidence 88888887775
No 312
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=24.44 E-value=5.1e+02 Score=26.42 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=46.2
Q ss_pred HHHHchh-cCCcEEEEEcCCCCchhHHHHHHHHhcCCCe--EEeCCCCCCCCCCccccccccceeEEEeeecceEEEeeh
Q 018062 273 AMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPS--YWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQ 349 (361)
Q Consensus 273 A~~eLa~-~~vD~miVIGGknSSNT~kL~eia~~~~~~t--~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (361)
.+.+|-+ ...|++++.| ....+..|++-+++.|..- .+|.+..=...........-.-.+.+||+.-..-+-.|+
T Consensus 222 ~l~~ik~~~~~~vIvl~~--~~~~~~~ll~~a~~~~~~g~~~wig~d~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~F~ 299 (463)
T cd06376 222 IIKRLLETPNARAVIIFA--NEDDIRRVLEAAKRANQVGHFLWVGSDSWGAKISPILQQEDVAEGAITILPKRASIEGFD 299 (463)
T ss_pred HHHHHhccCCCeEEEEec--ChHHHHHHHHHHHhcCCcCceEEEEeccccccccccccCcceeeeEEEEEeccccchhHH
Confidence 4455521 3688887776 4567788998888888643 345443211111111111112357788887777788888
Q ss_pred hhhh
Q 018062 350 SFFI 353 (361)
Q Consensus 350 ~~~~ 353 (361)
.|+-
T Consensus 300 ~~~~ 303 (463)
T cd06376 300 AYFT 303 (463)
T ss_pred HHHH
Confidence 8876
No 313
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=24.37 E-value=3.7e+02 Score=26.96 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=44.9
Q ss_pred ceEEEEEcCCCChH-HHHHHHHHHHHHHhhhcCcccccccccccccc-cHHHHHHH-HHHHHchhcCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTI-CDATQERQ-DAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~-~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTI-C~AT~~RQ-~A~~eLa~~~vD~miVIGGknSS 294 (361)
+++.+|+..++... .++++.+.|++. . .++.+|+.+ -+.|.+-= ++++.+.+.++|++|-|||-.+-
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~-----~-----~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~i 96 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAA-----G-----IEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSM 96 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHc-----C-----CeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 57888887664333 467776666541 1 122223211 22222222 22223323579999999999999
Q ss_pred hhHHHHHHHH
Q 018062 295 NTSHLQEIAE 304 (361)
Q Consensus 295 NT~kL~eia~ 304 (361)
.+.|.+.+.-
T Consensus 97 D~aK~ia~~~ 106 (376)
T cd08193 97 DVAKLVAVLA 106 (376)
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 314
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=24.28 E-value=50 Score=32.40 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=29.6
Q ss_pred HHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
.|+++++.|....+|.+++|||-.|-.+-++. +++.+.+...|
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L--~~~~~i~vigi 122 (282)
T PF00365_consen 80 GRKKIVENLKKLGIDALIVIGGDGSMKGAHKL--SEEFGIPVIGI 122 (282)
T ss_dssp HHHHHHHHHHHTTESEEEEEESHHHHHHHHHH--HHHHHSEEEEE
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCHHHHHHHH--HhcCceEEEEE
Confidence 45566777765689999999999998776543 33334555555
No 315
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=24.27 E-value=1.7e+02 Score=26.96 Aligned_cols=45 Identities=7% Similarity=-0.055 Sum_probs=29.5
Q ss_pred HHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 270 RQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 270 RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
..+++..+...++|.+|+++...+.++ +....++.+.|...+...
T Consensus 41 ~~~~~~~~~~~~vdGvIi~~~~~~~~~--~~~~~~~~~~PvV~i~~~ 85 (247)
T cd06276 41 LFKNIISNTKGKYSGYVVMPHFKNEIQ--YFLLKKIPKEKLLILDHS 85 (247)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCcHH--HHHHhccCCCCEEEEcCc
Confidence 333444333478999999986544443 445555567899999875
No 316
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=24.23 E-value=7.2e+02 Score=24.76 Aligned_cols=42 Identities=17% Similarity=0.030 Sum_probs=26.1
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 018062 98 DVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (361)
Q Consensus 98 ~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~I 147 (361)
+.|-|+-+|.+++..+.++..+ ..-.++.+.++.+.+.|..+
T Consensus 116 ~~v~iSldg~~~e~~d~irg~~--------g~f~~~~~~i~~l~~~g~~v 157 (378)
T PRK05301 116 DHIQLSFQDSDPELNDRLAGTK--------GAFAKKLAVARLVKAHGYPL 157 (378)
T ss_pred CEEEEEecCCCHHHHHHHcCCC--------chHHHHHHHHHHHHHCCCce
Confidence 3567888888888888775431 12344555566666666654
No 317
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=24.20 E-value=59 Score=27.46 Aligned_cols=34 Identities=0% Similarity=0.078 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecc
Q 018062 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNE 63 (361)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~ 63 (361)
++|++|.|-+||-|...|+++..- + ...|++++-
T Consensus 2 ~~ili~sHG~~A~gl~~s~~~i~G---~--~~~i~~i~~ 35 (116)
T TIGR00824 2 IAIIISGHGQAAIALLKSAEMIFG---E--QNNVGAVPF 35 (116)
T ss_pred cEEEEEecHHHHHHHHHHHHHHcC---C--cCCeEEEEc
Confidence 579999999999999999998731 1 134888883
No 318
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.04 E-value=1.5e+02 Score=22.30 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=28.8
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie 314 (361)
++=|+++++.- .+|..+..+++.+++.|.+++-|-
T Consensus 46 ~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 46899998874 457889999999999998887765
No 319
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=23.93 E-value=2.3e+02 Score=26.54 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHcCcEEecC-Ccc-ccccc----cccCCCEEEEc--CCCCCHHHHHHHHhcCCcEEe
Q 018062 66 HNPTVNKRLEEMAVQNIPV-EEG-KKQFD----VVNKGDVVVLP--AFGAAVEEMVTLNNKNVQIVD 124 (361)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~~-~~~-~~~l~----el~~g~~VIIr--AHGv~~~v~~~l~~kgl~ViD 124 (361)
+.+.+.+.|+++|+.+.-- .++ .-.++ ++.+-|.|++| .|+........++..|+.++.
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n 77 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVIN 77 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEEC
Confidence 4678889999999886420 000 00111 22234678888 666555566677888998885
No 320
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.92 E-value=5.6e+02 Score=23.38 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=20.9
Q ss_pred cCCCEE-EEcCCCCCHHHHHH---HHhcCCcEEeCcC
Q 018062 95 NKGDVV-VLPAFGAAVEEMVT---LNNKNVQIVDTTC 127 (361)
Q Consensus 95 ~~g~~V-IIrAHGv~~~v~~~---l~~kgl~ViDATC 127 (361)
.+||.+ +|+.=|-++++.+. ++++|..+|=-|+
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~ 146 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTG 146 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 467765 58888999988554 4445555554443
No 321
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=23.64 E-value=6.6e+02 Score=25.91 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred ceEE-EEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHH------------HHHHHHHHHHchhcCCcE
Q 018062 218 VKVG-IANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDA------------TQERQDAMYKMVEEKVDL 284 (361)
Q Consensus 218 ~kv~-vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~A------------T~~RQ~A~~eLa~~~vD~ 284 (361)
++++ +..-+.....-.+.+.+.+++ ..||-+ ..+=...+.+|.....|+
T Consensus 173 ~~Vaiv~~d~~yg~~~~~~~~~~~~~------------------~gi~I~~~~~i~~~~~~~~~~~~~~l~~i~~~~arv 234 (469)
T cd06365 173 TWVGLVISDDDRGEQFLSDLREEMQR------------------NGICLAFVEKIPVNMQLYLTRAEKYYNQIMTSSAKV 234 (469)
T ss_pred eEEEEEEecChhHHHHHHHHHHHHHH------------------CCeEEEEEEEecCCchhhHHHHHHHHHHhhcCCCeE
Q ss_pred EEEEcCCCCchhHHH-HHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEeeecceEEEeehhhhhhe
Q 018062 285 ILVVGGWNSSNTSHL-QEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQSFFINY 355 (361)
Q Consensus 285 miVIGGknSSNT~kL-~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (361)
+|+.|. +.....| .+..++.+...-+|.+..=..+........-.-.+.|||+--..-+-.|+.|+-+.
T Consensus 235 Ivl~~~--~~~~~~l~~~~~~~~~~~~~wi~s~~w~~~~~~~~~~~~~~~G~lg~~~~~~~~~~f~~fl~~l 304 (469)
T cd06365 235 IIIYGD--TDSLLEVSFRLWQYLLIGKVWITTSQWDVTTSPKDFTLNSFHGTLIFSHHHSEIPGFKDFLQTV 304 (469)
T ss_pred EEEEcC--cHHHHHHHHHHHHhccCceEEEeeccccccccccccccceeeEEEEEEeccCcCcchHHHhhcc
No 322
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=23.40 E-value=1.5e+02 Score=32.25 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=45.4
Q ss_pred CCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 018062 32 SYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 32 ~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
...+...|.|+++.+.++.++. ++++.+.|++--+|..+--|-.+|+..++
T Consensus 474 ~~~~hPav~~~i~~v~~~a~~~-g~~v~vCGe~A~dp~~~~lLlglGi~~lS 524 (575)
T PRK11177 474 YNPMSPSVLNLIKQVIDASHAE-GKWTGMCGELAGDERATLLLLGMGLDEFS 524 (575)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHCCCCeEE
Confidence 4557789999999999988865 68999999999999999999999998775
No 323
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=23.40 E-value=1.6e+02 Score=23.84 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=34.8
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGN 323 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~ 323 (361)
++-|++|++.- .++..+.++++.|++.|.+.+.|.+-.+-+-.+
T Consensus 59 ~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~ 103 (139)
T cd05013 59 TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAK 103 (139)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHH
Confidence 45788888875 456778899999999999999999987655443
No 324
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=23.29 E-value=3.2e+02 Score=25.82 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCe-EEe
Q 018062 266 ATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS-YWI 313 (361)
Q Consensus 266 AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t-~~I 313 (361)
.+.+-++++++++++.+|+++..|...+. -+.++|++. |++ |.+
T Consensus 42 ~~~~~~~~i~~~~~~g~dlIi~~g~~~~~---~~~~vA~~~-p~~~F~~ 86 (258)
T cd06353 42 EGADAERVLRELAAQGYDLIFGTSFGFMD---AALKVAKEY-PDVKFEH 86 (258)
T ss_pred chHhHHHHHHHHHHcCCCEEEECchhhhH---HHHHHHHHC-CCCEEEE
Confidence 45677788999986679999997765554 455688777 454 444
No 325
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=23.27 E-value=5.5e+02 Score=23.02 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchhcCCcEEEEEcCCCCchhHHHHHHHHhc
Q 018062 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 306 (361)
Q Consensus 228 ~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~ 306 (361)
++-.-|..+.+-+++.... .+ -++.+.++ .-..++|.+ +..|.+..+|.+|+.+...+ ...+ +.+.+.
T Consensus 9 ~~~~~~~~i~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~~~-~~~~~~ 77 (260)
T cd06286 9 INHPYFSQLVDGIEKAALK-HG-----YKVVLLQT--NYDKEKELEYLELLKTKQVDGLILCSREND--WEVI-EPYTKY 77 (260)
T ss_pred CCCchHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCChHHHHHHHHHHHHcCCCEEEEeCCCCC--HHHH-HHHhcC
Confidence 3444456666666553322 12 22333332 334556644 44454567999999876433 2333 334455
Q ss_pred CCCeEEeCCCCC
Q 018062 307 GIPSYWIDSEKR 318 (361)
Q Consensus 307 ~~~t~~Ie~~~e 318 (361)
+ |..++.+..+
T Consensus 78 ~-pvv~~~~~~~ 88 (260)
T cd06286 78 G-PIVLCEEYDS 88 (260)
T ss_pred C-CEEEEecccC
Confidence 5 8888887644
No 326
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=23.22 E-value=56 Score=33.15 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=22.7
Q ss_pred ceEEecccccCHHHHHHHHHcCcE
Q 018062 57 KIWITNEIIHNPTVNKRLEEMAVQ 80 (361)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~~~GV~ 80 (361)
.-|+-||-+||..|++.|...||.
T Consensus 376 eyYmCGPp~mNasvikmL~dlGVE 399 (410)
T COG2871 376 EYYMCGPPLMNASVIKMLKDLGVE 399 (410)
T ss_pred eEEeeCcchhhHHHHHHHHhcCcc
Confidence 589999999999999999999986
No 327
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=23.19 E-value=4.9e+02 Score=23.77 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=27.0
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 018062 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (361)
Q Consensus 94 l~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~II 148 (361)
+++-|.|||+- |-+....+.|++. ..+.+.++++.++|-.|+
T Consensus 38 l~~~D~lilPG-G~~~~~~~~L~~~------------~~~~~~i~~~~~~g~pil 79 (198)
T cd03130 38 LPDADGLYLGG-GYPELFAEELSAN------------QSMRESIRAFAESGGPIY 79 (198)
T ss_pred CCCCCEEEECC-CchHHHHHHHHhh------------HHHHHHHHHHHHcCCCEE
Confidence 34346799999 8766555566432 345677778888876543
No 328
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=23.19 E-value=68 Score=28.96 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=32.0
Q ss_pred EEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCc
Q 018062 285 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNK 324 (361)
Q Consensus 285 miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~ 324 (361)
++|+||..|.=|.-=.+++.+.+.+.+++.+..-++.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~ 41 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMA 41 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHH
Confidence 6899999999888766777777778888999887766533
No 329
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=23.15 E-value=4.3e+02 Score=24.95 Aligned_cols=82 Identities=7% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCceEEecccc---cCHHHHHHHHHcCcEEecCCccccccc---cccCCCEEE-EcCCCCCH---
Q 018062 40 ERAVQIAYEARKQFPEEKIWITNEII---HNPTVNKRLEEMAVQNIPVEEGKKQFD---VVNKGDVVV-LPAFGAAV--- 109 (361)
Q Consensus 40 ~RAI~~a~~~~~~~~~~~Vy~lG~iI---HN~~Vv~~L~~~GV~~v~~~~~~~~l~---el~~g~~VI-IrAHGv~~--- 109 (361)
...++.+-+.+.+ .++||++|.=. =-.+...+|...|..+....+...... .+.++|.+| |+--|-++
T Consensus 115 ~~~l~~~~~~i~~--a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~ 192 (278)
T PRK11557 115 EEKLHECVTMLRS--ARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELN 192 (278)
T ss_pred HHHHHHHHHHHhc--CCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHH
Q ss_pred HHHHHHHhcCCcEE
Q 018062 110 EEMVTLNNKNVQIV 123 (361)
Q Consensus 110 ~v~~~l~~kgl~Vi 123 (361)
+..+.|+++|..||
T Consensus 193 ~~~~~ak~~ga~iI 206 (278)
T PRK11557 193 LAADEALRVGAKVL 206 (278)
T ss_pred HHHHHHHHcCCCEE
No 330
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=23.15 E-value=95 Score=31.37 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 282 vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
-.++.|||+..|+-|..+..+|...+.|-.
T Consensus 102 ~~v~aviG~~~S~~~~av~~~~~~~~ip~I 131 (452)
T cd06362 102 KPVAGVIGASYSSVSIQVANLLRLFKIPQI 131 (452)
T ss_pred CCeEEEECCCCCchHHHHHHHhccccCccc
Confidence 468889999999999999999998887743
No 331
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=23.12 E-value=8.2e+02 Score=25.01 Aligned_cols=103 Identities=14% Similarity=0.217 Sum_probs=55.7
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHH----h-hCC--CCceEEecccccCHH----HHHHHHHcCcEEecCCccccccc
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEAR----K-QFP--EEKIWITNEIIHNPT----VNKRLEEMAVQNIPVEEGKKQFD 92 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~----~-~~~--~~~Vy~lG~iIHN~~----Vv~~L~~~GV~~v~~~~~~~~l~ 92 (361)
+..|+.+..-||..+...+.+.+.+++ . ..+ .+.+-.+|+ +||. +..-|++.|+.++.-.++. .++
T Consensus 115 ~~pVi~v~tpgf~g~~~~G~~~~~~alv~~~~~~~~~~~~~vniiG~--~~~~d~~elk~lL~~~Gi~v~~~lpd~-~~~ 191 (407)
T TIGR01279 115 GVPVLFAPASGLDYTFTQGEDTVLAALVPFCPEAPASEQRALVLVGS--VNDIVADQLRLELKQLGIPVVGFLPAS-HFT 191 (407)
T ss_pred CCCEEEeeCCCccccHHHHHHHHHHHHHHhhccccCCCCCcEEEEec--cChhhHHHHHHHHHHcCCeEEEEeCCC-Ccc
Confidence 356888888899755445544443322 2 111 246888997 5663 3445688999986222211 233
Q ss_pred ccc--CCCEEEEcCCCCCHHHHHHHHh-cCCcEEeCcChh
Q 018062 93 VVN--KGDVVVLPAFGAAVEEMVTLNN-KNVQIVDTTCPW 129 (361)
Q Consensus 93 el~--~g~~VIIrAHGv~~~v~~~l~~-kgl~ViDATCP~ 129 (361)
+++ .+.+.+..-+......-+.|++ .|...+...-|+
T Consensus 192 e~~~~~~~~~~~~~~~~~~~~A~~Le~~~GiP~~~~~~Pi 231 (407)
T TIGR01279 192 ELPVIGPGTVVAPLQPYLSDTATTLRRERGAKVLSAPFPF 231 (407)
T ss_pred hhhhcCCCeEEEEechHHHHHHHHHHHHhCCccccCCCCc
Confidence 443 1333333222222245566655 688877776665
No 332
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=23.04 E-value=2e+02 Score=23.45 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=13.2
Q ss_pred EEEEcCCCCCHHH-HHHHHh
Q 018062 99 VVVLPAFGAAVEE-MVTLNN 117 (361)
Q Consensus 99 ~VIIrAHGv~~~v-~~~l~~ 117 (361)
..||.|+|-+++. .+.+++
T Consensus 58 ~pVInA~G~T~eEI~~~v~~ 77 (80)
T PF03698_consen 58 VPVINASGLTAEEIVQEVEE 77 (80)
T ss_pred ceEEecCCCCHHHHHHHHHH
Confidence 4689999988765 445544
No 333
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=22.97 E-value=5.9e+02 Score=23.27 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=29.9
Q ss_pred HHHHHHHH-chhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 269 ERQDAMYK-MVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 269 ~RQ~A~~e-La~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
..++++.+ |.+.+||.+|+.+... |. ..++.+++.+.|...+.+.
T Consensus 42 ~~~~~~~~~l~~~~vdgvi~~~~~~--~~-~~~~~l~~~~iPvv~~~~~ 87 (269)
T cd06297 42 RLKRYLESTTLAYLTDGLLLASYDL--TE-RLAERRLPTERPVVLVDAE 87 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcc--Ch-HHHHHHhhcCCCEEEEccC
Confidence 34455543 5446899999997542 33 4445566788999999764
No 334
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=22.83 E-value=5.5e+02 Score=22.91 Aligned_cols=84 Identities=15% Similarity=0.039 Sum_probs=44.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHH-HHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~-~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++.++ ++-.-|..+.+.+++...+. + -.+.+.++- + ....|.++ ..+.+.++|.+++.++.. .++
T Consensus 2 i~~v~~~-~~~~~~~~~~~~i~~~~~~~-g-----~~~~~~~~~-~-~~~~~~~~~~~~~~~~vdgiii~~~~~-~~~-- 69 (267)
T cd06284 2 ILVLVPD-IANPFFSEILKGIEDEAREA-G-----YGVLLGDTR-S-DPEREQEYLDLLRRKQADGIILLDGSL-PPT-- 69 (267)
T ss_pred EEEEECC-CCCccHHHHHHHHHHHHHHc-C-----CeEEEecCC-C-ChHHHHHHHHHHHHcCCCEEEEecCCC-CHH--
Confidence 4555544 45566777777776643332 1 123333221 1 23345444 344346799999976542 222
Q ss_pred HHHHHHhcCCCeEEeCCC
Q 018062 299 LQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~ 316 (361)
+.+.. ..|.|...+.+.
T Consensus 70 ~~~~~-~~~ipvv~~~~~ 86 (267)
T cd06284 70 ALTAL-AKLPPIVQACEY 86 (267)
T ss_pred HHHHH-hcCCCEEEEecc
Confidence 22333 348888877653
No 335
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.80 E-value=5.7e+02 Score=23.07 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=44.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|+++... ++-.-|..+.+.+.+...+. + -.+.++++ ....+.| +.+..|.+.++|.+|+.+-..+..
T Consensus 2 Ig~i~p~-~~~~~~~~~~~~i~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~--- 69 (263)
T cd06280 2 VGLIVAD-IRNPFFTAVSRAVEDAAYRA-G-----LRVILCNT--DEDPEKEAMYLELMEEERVTGVIFAPTRATLR--- 69 (263)
T ss_pred EEEEecc-cccccHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCCch---
Confidence 4455433 33445666766666543222 2 12222211 1122334 344556556799999987543332
Q ss_pred HHHHHHhcCCCeEEeCCCC
Q 018062 299 LQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 299 L~eia~~~~~~t~~Ie~~~ 317 (361)
+.+. ...+.|..++++..
T Consensus 70 ~~~~-~~~~iPvV~~~~~~ 87 (263)
T cd06280 70 RLAE-LRLSFPVVLIDRAG 87 (263)
T ss_pred HHHH-HhcCCCEEEECCCC
Confidence 2233 35678999998753
No 336
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.75 E-value=4.1e+02 Score=26.16 Aligned_cols=105 Identities=22% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhH-----HHH
Q 018062 226 TTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS-----HLQ 300 (361)
Q Consensus 226 TT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~-----kL~ 300 (361)
.|++.+|-.++++...+....+.+. +..+-++.|.+=.+-++.-.+--+|.++|+--+-.--++ +..
T Consensus 52 ~~Ls~eEr~~v~~~~v~~~~grvpv--------iaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~ 123 (299)
T COG0329 52 PTLTLEERKEVLEAVVEAVGGRVPV--------IAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFK 123 (299)
T ss_pred hhcCHHHHHHHHHHHHHHHCCCCcE--------EEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHH
Q ss_pred HHHHhcCCCe--EEeCCCCCCCCCCccccccccceeEEEe
Q 018062 301 EIAEDRGIPS--YWIDSEKRIGPGNKIAYKLMVCVNILNF 338 (361)
Q Consensus 301 eia~~~~~~t--~~Ie~~~eL~~~~~~~~~~~~~~~~~~~ 338 (361)
.||+..+.|. |.|-+..-.+-.....-...+..|++||
T Consensus 124 ~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgi 163 (299)
T COG0329 124 AIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGV 163 (299)
T ss_pred HHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEE
No 337
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=22.75 E-value=1.5e+02 Score=26.34 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=33.9
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKRI 319 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~eL 319 (361)
.+=|++|+|.- .+|.++..+++.|++.|.++..|.+..+=
T Consensus 74 ~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 74 GPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 46899999975 67888999999999999999999886543
No 338
>cd03108 AdSS Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Probab=22.69 E-value=1.3e+02 Score=31.01 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEe
Q 018062 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (361)
Q Consensus 105 HGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG 151 (361)
-|+.|...+++.++|+.+-|- -+.....+..++|..|++=|
T Consensus 129 rGIGpay~dk~~R~gir~~Dl------d~~~~l~~a~~~gk~vLfEG 169 (363)
T cd03108 129 RGIGPAYEDKAARRGIRVGDL------DTSYLINEAIQAGKKVLFEG 169 (363)
T ss_pred CcchHHHHHhhhccCCeEEeC------cHHHHHHHHHHcCCcEEEEc
Confidence 478899999999999999987 33455667778899998876
No 339
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=22.52 E-value=6.6e+02 Score=23.67 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++... ++-.-|.++.+.+.+...+. + -++.+.+ +....++|.. ++.|.+..+|.+|++|...+
T Consensus 60 ~~Igvv~~~-~~~~f~~~l~~~i~~~~~~~-g-----~~~~i~~--~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~--- 127 (329)
T TIGR01481 60 TTVGVIIPD-ISNIYYAELARGIEDIATMY-K-----YNIILSN--SDEDPEKEVQVLNTLLSKQVDGIIFMGGTIT--- 127 (329)
T ss_pred CEEEEEeCC-CCchhHHHHHHHHHHHHHHc-C-----CEEEEEe--CCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 468888764 34455677777776543222 1 1222221 1222344433 34454568999999875322
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
..+.+...+.+.|..++.+.
T Consensus 128 ~~~~~~l~~~~iPvV~~~~~ 147 (329)
T TIGR01481 128 EKLREEFSRSPVPVVLAGTV 147 (329)
T ss_pred hHHHHHHHhcCCCEEEEecC
Confidence 33445556678899888764
No 340
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=22.49 E-value=3.2e+02 Score=27.52 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=46.5
Q ss_pred ceEEEEEcCCC--ChHHHHHHHHHHHHHHhhhcCccccccccccccccc-HHHHHHHH-HHHHchhcCCcEEEEEcCCCC
Q 018062 218 VKVGIANQTTM--LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQD-AMYKMVEEKVDLILVVGGWNS 293 (361)
Q Consensus 218 ~kv~vvsQTT~--s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ~-A~~eLa~~~vD~miVIGGknS 293 (361)
+|+.+|+-... ....+.++.+.|++. +.++.+|+.+. ++|.+-=+ +++.+-+..+|++|=|||=.+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~----------~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQA----------GVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHc----------CCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 47888886543 345666777766541 12234455442 22222222 222222347999999999999
Q ss_pred chhHHHHHHHHh
Q 018062 294 SNTSHLQEIAED 305 (361)
Q Consensus 294 SNT~kL~eia~~ 305 (361)
-.+-|.+.+...
T Consensus 96 iD~aK~ia~~~~ 107 (380)
T cd08185 96 MDTAKAIAFMAA 107 (380)
T ss_pred HHHHHHHHHHhh
Confidence 999998877643
No 341
>PRK08562 rpl32e 50S ribosomal protein L32e; Validated
Probab=22.47 E-value=1.2e+02 Score=26.89 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=29.2
Q ss_pred cccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCC----HHHHHHHHhcCCcEEeC
Q 018062 64 IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA----VEEMVTLNNKNVQIVDT 125 (361)
Q Consensus 64 iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~----~~v~~~l~~kgl~ViDA 125 (361)
||||+..++.| +. . .-.+-=||.|+ .++.++|++.|+.|..+
T Consensus 78 lV~N~keLe~l--------~~-----------~-~~aa~Ia~~Vg~rKR~~I~~rA~el~ikV~N~ 123 (125)
T PRK08562 78 LVHNVKELEKL--------DP-----------E-TQAARIASTVGKRKRLEILKKARELGIKVLNP 123 (125)
T ss_pred EecCHHHhhhc--------cC-----------C-ceEEEEeccccchhHHHHHHHHHHhCCcccCC
Confidence 79999666654 21 1 12334488888 57789999999998754
No 342
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=22.45 E-value=1.5e+02 Score=33.34 Aligned_cols=48 Identities=25% Similarity=0.244 Sum_probs=42.7
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEeccccc-CHHHHHHHHHcCcEEec
Q 018062 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIH-NPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIH-N~~Vv~~L~~~GV~~v~ 83 (361)
+-..|.+||+.+.++.++. ++++-+.|++-. +|.....|-.+|+.++.
T Consensus 716 ~hPaV~~~i~~vi~~a~~~-g~~vgicge~~~~~p~~~~~l~~~G~~~ls 764 (782)
T TIGR01418 716 RNPAVLRLIEMAIKAAKEH-GKKVGICGQAPSDYPEVVEFLVEEGIDSIS 764 (782)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCeEEEeCCCCCCCHHHHHHHHHcCCCEEE
Confidence 5578999999999988864 679999999998 89999999999999885
No 343
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=22.35 E-value=4.7e+02 Score=23.82 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=45.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccc--cHHHHHHHHH-HHHchhcCCcEEEEEcCCCCchh
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI--CDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTI--C~AT~~RQ~A-~~eLa~~~vD~miVIGGknSSNT 296 (361)
|+++.-+ ++-.-|..+.+.+.+..... +. .....++. ...-...|.. +..+.+ ++|.+++++. +++-+
T Consensus 2 ig~v~~~-~~~~~~~~~~~~i~~~~~~~-g~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~-~~~~~ 72 (275)
T cd06307 2 LGFLLPK-GSNAFYRELAAALEAAAAAF-PD-----ARIRVRIHFVESFDPAALAAALLRLGA-RSDGVALVAP-DHPQV 72 (275)
T ss_pred eEEEeCC-CCChHHHHHHHHHHHHHhhh-hc-----cCceEEEEEccCCCHHHHHHHHHHHHh-cCCEEEEeCC-CcHHH
Confidence 5555433 44566777777776543222 10 01111111 1122344533 334544 8999998753 33333
Q ss_pred HHHHHHHHhcCCCeEEeCC
Q 018062 297 SHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~ 315 (361)
....+-+.+.+.|...+.+
T Consensus 73 ~~~i~~~~~~~ipvV~~~~ 91 (275)
T cd06307 73 RAAVARLAAAGVPVVTLVS 91 (275)
T ss_pred HHHHHHHHHCCCcEEEEeC
Confidence 4555666678889887764
No 344
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=22.13 E-value=4.5e+02 Score=27.06 Aligned_cols=81 Identities=12% Similarity=0.204 Sum_probs=50.6
Q ss_pred HHHHHch-hcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEeeecceEEEeehh
Q 018062 272 DAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQS 350 (361)
Q Consensus 272 ~A~~eLa-~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (361)
..+.+|. ....|++|+.|. ...+..|++-+++.|...-+|.+-.=-.+.....-..-.-.+.+||+--..-+-.|++
T Consensus 222 ~~l~~l~~~~~a~vVvl~~~--~~~~~~ll~~a~~~g~~~~wigs~~~~~~~~~~~~~~~~~~G~i~~~~~~~~i~~f~~ 299 (458)
T cd06375 222 SVIRKLLQKPNARVVVLFTR--SEDARELLAAAKRLNASFTWVASDGWGAQESIVKGSEDVAEGAITIELASHPIPDFDR 299 (458)
T ss_pred HHHHHHhccCCCEEEEEecC--hHHHHHHHHHHHHcCCcEEEEEeccccccchhhhccchhhceEEEEEeccccchhHHH
Confidence 3455542 136888877765 4678889988989987644564332111211111111233578999999999999999
Q ss_pred hhhh
Q 018062 351 FFIN 354 (361)
Q Consensus 351 ~~~~ 354 (361)
||-+
T Consensus 300 yl~~ 303 (458)
T cd06375 300 YFQS 303 (458)
T ss_pred HHHh
Confidence 8855
No 345
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=22.06 E-value=2.6e+02 Score=25.72 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHHHHHcCcEEecCCcccc----------------ccccccCCCEEEEcCCCC-CHH-HHHHHHhcCCcEEeCcChhh
Q 018062 69 TVNKRLEEMAVQNIPVEEGKK----------------QFDVVNKGDVVVLPAFGA-AVE-EMVTLNNKNVQIVDTTCPWV 130 (361)
Q Consensus 69 ~Vv~~L~~~GV~~v~~~~~~~----------------~l~el~~g~~VIIrAHGv-~~~-v~~~l~~kgl~ViDATCP~V 130 (361)
+++.+|.++|+.+-... ... ....+. ..+|-++.||. +.+ ....|...|+.++.
T Consensus 63 ~~L~~L~~~G~l~~~~~-~~~~~~~~f~~~~g~~~~~a~~~l~-~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------ 134 (193)
T TIGR03882 63 YALDRLERRGYLVEDAP-ELPPAAAAFWSGLGVDPAAALERLR-QLTVTVLSFGEGGAAALAAALAAAGIRIAP------ 134 (193)
T ss_pred HHHHHHHHCCCEeccCC-CCCHHHHHHHHHcCCCHHHHHHHHh-cCcEEEEecCCCcHHHHHHHHHHcCCCccC------
Confidence 67888999998764321 000 011111 24688999995 556 78889999999986
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCceeeeecc
Q 018062 131 SKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS 163 (361)
Q Consensus 131 ~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g 163 (361)
.+.+-+||+.=|..+||...++.
T Consensus 135 ----------~~a~l~vVl~~Dyl~p~L~~~n~ 157 (193)
T TIGR03882 135 ----------SEADLTVVLTDDYLDPELAAINQ 157 (193)
T ss_pred ----------CCCCEEEEEeCCCCChHHHHHHH
Confidence 23456777777788888877643
No 346
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=22.04 E-value=1.2e+02 Score=31.46 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=56.5
Q ss_pred ceEEecccccCHH-------------HHHHHHHcC--cEEecCCccccccccccCCCEEEEc--CCCCCHHH--------
Q 018062 57 KIWITNEIIHNPT-------------VNKRLEEMA--VQNIPVEEGKKQFDVVNKGDVVVLP--AFGAAVEE-------- 111 (361)
Q Consensus 57 ~Vy~lG~iIHN~~-------------Vv~~L~~~G--V~~v~~~~~~~~l~el~~g~~VIIr--AHGv~~~v-------- 111 (361)
++|+.||.|.|+- ...-|+.+| |.+|.+ ++|+ |+.++-+ .-|++|+.
T Consensus 11 ~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~n------itD~--ddKIi~~A~~~G~~~~e~a~~~~~~ 82 (384)
T PRK12418 11 TMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQN------VTDV--DDPLLERAARDGVDWRDLAEREIAL 82 (384)
T ss_pred EEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEe------cCCc--chHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6899999988752 234456778 556654 3444 4455544 35888765
Q ss_pred -HHHHHhcCCc----EEeCcChhhHHHHHHHHHHhhCCCeEEE
Q 018062 112 -MVTLNNKNVQ----IVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (361)
Q Consensus 112 -~~~l~~kgl~----ViDATCP~V~kv~~~v~~~~~~Gy~III 149 (361)
.+.++..|+. ..=+|=+ +..++..++++.++||-..-
T Consensus 83 f~~d~~~Lni~~~~~~~raTe~-i~~~~~~i~~L~~kG~aY~~ 124 (384)
T PRK12418 83 FREDMEALRVLPPRDYVGAVES-IPEVVELVEKLLASGAAYVV 124 (384)
T ss_pred HHHHHHHhCCCCCCccccCCCC-HHHHHHHHHHHHHCCCEEEe
Confidence 4455666753 3445554 89999999999999998754
No 347
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.93 E-value=2.6e+02 Score=28.79 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=47.3
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEec--ccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEE
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITN--EIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV 101 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG--~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VI 101 (361)
+.+|.+.. .|+ - .++.|+-+.+. +..|.... +--.-+...+.|+++||.+..+.. .....+-| +|
T Consensus 16 ~~~v~viG-~G~-~----G~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~----~~~~~~~D-~V 82 (480)
T PRK01438 16 GLRVVVAG-LGV-S----GFAAADALLEL--GARVTVVDDGDDERHRALAAILEALGATVRLGPG----PTLPEDTD-LV 82 (480)
T ss_pred CCEEEEEC-CCH-H----HHHHHHHHHHC--CCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCC----ccccCCCC-EE
Confidence 45666552 233 3 33445444442 34565542 111122456779999999875421 11111234 66
Q ss_pred EcCCCCCHHH--HHHHHhcCCcEE
Q 018062 102 LPAFGAAVEE--MVTLNNKNVQIV 123 (361)
Q Consensus 102 IrAHGv~~~v--~~~l~~kgl~Vi 123 (361)
|-+-|++|.. +..++++|+.|+
T Consensus 83 v~s~Gi~~~~~~~~~a~~~gi~v~ 106 (480)
T PRK01438 83 VTSPGWRPDAPLLAAAADAGIPVW 106 (480)
T ss_pred EECCCcCCCCHHHHHHHHCCCeec
Confidence 7788998654 456788888875
No 348
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=21.89 E-value=6.7e+02 Score=23.54 Aligned_cols=88 Identities=14% Similarity=0.251 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++..+ ++-.-|..+.+-+.+...+. + -++.+.. +.-..++| +.++.|.+..+|.+|+.+...+...
T Consensus 57 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~--~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~ 127 (327)
T PRK10423 57 RTIGMLITA-STNPFYSELVRGVERSCFER-G-----YSLVLCN--TEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPS 127 (327)
T ss_pred CeEEEEeCC-CCCCcHHHHHHHHHHHHHHc-C-----CEEEEEe--CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhh
Confidence 468887743 34445666776666543322 1 1222221 22233455 4455565568999999987655444
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
..+++ +..+.|...+...
T Consensus 128 ~~~l~--~~~~iPvV~i~~~ 145 (327)
T PRK10423 128 REIMQ--RYPSVPTVMMDWA 145 (327)
T ss_pred HHHHH--hcCCCCEEEECCc
Confidence 33332 2246788888753
No 349
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=21.85 E-value=28 Score=25.82 Aligned_cols=12 Identities=50% Similarity=0.659 Sum_probs=10.0
Q ss_pred EcCCCCchhHHH
Q 018062 288 VGGWNSSNTSHL 299 (361)
Q Consensus 288 IGGknSSNT~kL 299 (361)
+-.+||.||.+|
T Consensus 21 ~~dYnShNT~rL 32 (48)
T PF08485_consen 21 VEDYNSHNTERL 32 (48)
T ss_pred ccccCCCCcccc
Confidence 357899999987
No 350
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.66 E-value=1.1e+02 Score=25.99 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=17.9
Q ss_pred EEEEEcCC-CCchhHHHHHHHHhc
Q 018062 284 LILVVGGW-NSSNTSHLQEIAEDR 306 (361)
Q Consensus 284 ~miVIGGk-nSSNT~kL~eia~~~ 306 (361)
.+++.|+. ..|||.+|++.+.+.
T Consensus 3 ilii~gS~r~~~~t~~l~~~~~~~ 26 (152)
T PF03358_consen 3 ILIINGSPRKNSNTRKLAEAVAEQ 26 (152)
T ss_dssp EEEEESSSSTTSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCCHHHHHHHHHHHH
Confidence 56788885 689999988877653
No 351
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.63 E-value=1.2e+02 Score=30.15 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=21.4
Q ss_pred HHchhcCCcEEEEEcCCCCchhHHHHHHHHh---cCCCeEEeC
Q 018062 275 YKMVEEKVDLILVVGGWNSSNTSHLQEIAED---RGIPSYWID 314 (361)
Q Consensus 275 ~eLa~~~vD~miVIGGknSSNT~kL~eia~~---~~~~t~~Ie 314 (361)
.++. ..+|++|++||-.. |...++. .++|.+-|.
T Consensus 63 ~~~~-~~~Dlvi~iGGDGT-----lL~aar~~~~~~iPilGIN 99 (305)
T PRK02649 63 PGFD-SSMKFAIVLGGDGT-----VLSAARQLAPCGIPLLTIN 99 (305)
T ss_pred hhcc-cCcCEEEEEeCcHH-----HHHHHHHhcCCCCcEEEEe
Confidence 4554 47999999999762 4444444 345655543
No 352
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.60 E-value=3.2e+02 Score=27.15 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=29.3
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 280 ~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
.++|++|-|||-.+-.+.|.+... .+.|-+.|-|-
T Consensus 75 ~~~D~iIavGGGs~~D~aK~ia~~--~~~p~i~VPTT 109 (347)
T cd08172 75 NGADVIIGIGGGKVLDTAKAVADR--LGVPVITVPTL 109 (347)
T ss_pred cCCCEEEEeCCcHHHHHHHHHHHH--hCCCEEEecCc
Confidence 479999999999999999987665 36788888775
No 353
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=21.50 E-value=1.1e+02 Score=26.07 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=26.0
Q ss_pred CCchhHHHHHHHHhcCCCeEEeCCCCCCCC
Q 018062 292 NSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (361)
Q Consensus 292 nSSNT~kL~eia~~~~~~t~~Ie~~~eL~~ 321 (361)
.+.|...|-++|+..+-..|++++.+|++.
T Consensus 139 ~~~~~~~l~~ia~~~~g~~~~~~~~~~~~~ 168 (170)
T cd01465 139 DNYNEDLMEAIADAGNGNTAYIDNLAEARK 168 (170)
T ss_pred CCcCHHHHHHHHhcCCceEEEeCCHHHHHh
Confidence 678999999999887778999999998864
No 354
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=21.50 E-value=1.5e+02 Score=29.40 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=36.3
Q ss_pred ccccccc----ccHHHHHHHHHH-HHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 256 HFISFNT----ICDATQERQDAM-YKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 256 ~~~v~nT----IC~AT~~RQ~A~-~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
++.++|| .|.+..--..++ ..+. ..+++ |||+..|+-|.-+..+|...+.|..
T Consensus 44 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~-~~v~a--viGp~~S~~~~av~~i~~~~~iP~I 101 (399)
T cd06384 44 TLLNKSSELNGGCSESLAPLHAVDLKLY-SDPDV--FFGPGCVYPTASVARFATHWRLPLI 101 (399)
T ss_pred EEEEeccCCccccchhhhHHHHHHHHhh-cCCCE--EECCCCchHHHHHHHHHhhcCCcEE
Confidence 4556666 565443332222 3344 45664 8899999999999999999998864
No 355
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=21.45 E-value=2.5e+02 Score=29.86 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=59.8
Q ss_pred cccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcC-CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHH
Q 018062 62 NEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA-FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKH 140 (361)
Q Consensus 62 G~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrA-HGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~ 140 (361)
.++--++ +.++|+++|+.+...- +-+.+.+++.||+++ -=-+-..++.++++|+ |++.+.+-+++-+
T Consensus 37 SD~~~~~-~t~~L~~~G~~i~~gh----~~~ni~~~~~VV~s~Ai~~~NpEi~~A~e~~i-------pi~~r~e~Laelm 104 (459)
T COG0773 37 SDLAESP-MTQRLEALGIEIFIGH----DAENILDADVVVVSNAIKEDNPEIVAALERGI-------PVISRAEMLAELM 104 (459)
T ss_pred ccccccH-HHHHHHHCCCeEeCCC----CHHHcCCCceEEEecccCCCCHHHHHHHHcCC-------CeEcHHHHHHHHH
Confidence 3455566 8999999999988642 223355566565543 3333455677888775 5568888887765
Q ss_pred hhCCCeEEEEecCCCceeeeecccC
Q 018062 141 KKGDYTSIIHGKYSHEETVATASFA 165 (361)
Q Consensus 141 ~~~Gy~IIIiG~~~HpEV~gi~g~a 165 (361)
+.-+.|-|-|-++-=-+.++.+|.
T Consensus 105 -~~~~~iaVaGTHGKTTTTsmla~v 128 (459)
T COG0773 105 -RFRTSIAVAGTHGKTTTTSMLAWV 128 (459)
T ss_pred -hCCeeEEEeCCCCchhHHHHHHHH
Confidence 446777788877766666666554
No 356
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=21.43 E-value=5.5e+02 Score=23.23 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=45.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL 299 (361)
|+++.- ++-.-|..+.+-+.+.+.+.-......-++.+.++--..+.. ++.++.|....+|.+|+.|. +++..+
T Consensus 2 igv~~~--~~~~~~~~~~~gi~~~~~~~g~~~g~~v~l~~~~~~~~~~~~-~~~~~~l~~~~vd~iI~~~~---~~~~~~ 75 (281)
T cd06325 2 VGILQL--VEHPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNL-PTIARKFVADKPDLIVAIAT---PAAQAA 75 (281)
T ss_pred eEEecC--CCCcchHHHHHHHHHHHHHhCccCCceEEEEEecCCCCHHHH-HHHHHHHHhcCCCEEEEcCc---HHHHHH
Confidence 555552 555556677777766443321100000012334443333332 34555565578999999864 233333
Q ss_pred HHHHHhcCCCeEEeCCC
Q 018062 300 QEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 300 ~eia~~~~~~t~~Ie~~ 316 (361)
. ....+.|..++...
T Consensus 76 ~--~~~~~iPvV~~~~~ 90 (281)
T cd06325 76 A--NATKDIPIVFTAVT 90 (281)
T ss_pred H--HcCCCCCEEEEecC
Confidence 2 44567788888643
No 357
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=21.41 E-value=2.6e+02 Score=25.07 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=27.3
Q ss_pred HHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 272 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 272 ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
+.++.|.+.++|.+|+.+...+ ....+.+.+.+.|...+.+.
T Consensus 46 ~~~~~l~~~~vdgiii~~~~~~---~~~~~~~~~~~ipvv~~~~~ 87 (268)
T cd01575 46 ELLRTLLSRRPAGLILTGLEHT---ERTRQLLRAAGIPVVEIMDL 87 (268)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC---HHHHHHHHhcCCCEEEEecC
Confidence 4455555567999999875432 34555566778888877653
No 358
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=21.30 E-value=1.5e+02 Score=24.57 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=31.1
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|++.- -+|..+.+.++.|++.|.++.-|.+..+
T Consensus 42 ~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~ 81 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSGGK 81 (119)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46789888875 4667788899999999999988886543
No 359
>PRK12310 hydroxylamine reductase; Provisional
Probab=21.28 E-value=1.1e+02 Score=32.41 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=40.5
Q ss_pred ceEEecccccCHHHHHHHH----HcCcEEecCCccccccccccCCCEEEEcCCCCCH-----------------HHHHHH
Q 018062 57 KIWITNEIIHNPTVNKRLE----EMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV-----------------EEMVTL 115 (361)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~----~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~-----------------~v~~~l 115 (361)
-|.+-| |||...+.|- .+||.+.. .|. ++.+||+|. +..+.+
T Consensus 126 nIlV~G---Hd~~~~e~ll~q~ga~GInvyT------------~~E--mL~~hg~p~l~k~~hl~Gn~g~aw~~Qe~ef~ 188 (433)
T PRK12310 126 AILVTG---HNLKALEELLKQTEGKGINVYT------------HSE--MLPAHGYPELKKYKHLKGNIGKAWYDQRKLFE 188 (433)
T ss_pred EEEEEC---CChHHHHHHHHHhcCCCeEEEe------------Ccc--hHhhccCccccccCccccCchhHHHhhHHHHH
Confidence 355555 8988888874 45666663 233 466999998 223356
Q ss_pred HhcCCcEEeCcChhhHH
Q 018062 116 NNKNVQIVDTTCPWVSK 132 (361)
Q Consensus 116 ~~kgl~ViDATCP~V~k 132 (361)
.--|..|+|.-|-+--.
T Consensus 189 ~~tGaiv~~~nCi~p~~ 205 (433)
T PRK12310 189 KFPGAILGTTNCVMPPK 205 (433)
T ss_pred hCCCCEEEeccCCCCCh
Confidence 66799999999976554
No 360
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=21.06 E-value=1.7e+02 Score=27.32 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 281 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 281 ~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
.-.++.|+|+..|+.+..+..+|...+.|..-......
T Consensus 61 ~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~~~~~ 98 (328)
T cd06351 61 SQGVAAIFGPTSSESASAVQSICDALEIPHISISGGSE 98 (328)
T ss_pred ccCcEEEECCCCHHHHHHHHHHhccCCCCeEEeecCcc
Confidence 35688899999999999999999999998776655443
No 361
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=20.88 E-value=8.9e+02 Score=24.59 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=33.1
Q ss_pred ccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 257 FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 257 ~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
+.+.-++.+.. .+..++ .-+| ++=||+++..|+.-|-+++ +.+.|..+
T Consensus 158 l~v~tev~d~~-----~~~~l~-~~vd-~lqIgAr~~~N~~LL~~va-~~~kPViL 205 (335)
T PRK08673 158 LPIVTEVMDPR-----DVELVA-EYVD-ILQIGARNMQNFDLLKEVG-KTNKPVLL 205 (335)
T ss_pred CcEEEeeCCHH-----HHHHHH-HhCC-eEEECcccccCHHHHHHHH-cCCCcEEE
Confidence 44556666553 333344 3467 8899999999999988888 45676664
No 362
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.81 E-value=3.9e+02 Score=26.53 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=29.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 280 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 280 ~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
.++|++|-|||-.+-.+.|..... .+.|-..|-|-.
T Consensus 77 ~~~d~iiavGGGs~~D~aK~ia~~--~~~p~i~VPTt~ 112 (345)
T cd08171 77 QEADMIFAVGGGKAIDTVKVLADK--LGKPVFTFPTIA 112 (345)
T ss_pred cCCCEEEEeCCcHHHHHHHHHHHH--cCCCEEEecCcc
Confidence 479999999999999999987665 467878887653
No 363
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=20.77 E-value=67 Score=25.61 Aligned_cols=43 Identities=16% Similarity=0.444 Sum_probs=32.5
Q ss_pred chhcCCcEEEEEcCCCCchhHH-HHHHHHhcCCCeEEeCCCCCC
Q 018062 277 MVEEKVDLILVVGGWNSSNTSH-LQEIAEDRGIPSYWIDSEKRI 319 (361)
Q Consensus 277 La~~~vD~miVIGGknSSNT~k-L~eia~~~~~~t~~Ie~~~eL 319 (361)
|-.+++-++|+-.+-+.....+ |-..|++.+.|.+++.|..||
T Consensus 27 l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eL 70 (95)
T PF01248_consen 27 LKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEEL 70 (95)
T ss_dssp HHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHH
T ss_pred HHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHH
Confidence 3335677777777777666667 888999999999999876665
No 364
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.74 E-value=1.4e+02 Score=21.97 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=26.1
Q ss_pred HHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCH-HHHHHHHhcCCcEE
Q 018062 69 TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV-EEMVTLNNKNVQIV 123 (361)
Q Consensus 69 ~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~-~v~~~l~~kgl~Vi 123 (361)
++.+-|.+.|+.+..-- .... .+...+.++. -++ ...+.|+++|.+|.
T Consensus 17 ~v~~~l~~~~inI~~i~----~~~~-~~~~~~rl~~--~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 17 AVTEILSEAGINIRALS----IADT-SEFGILRLIV--SDPDKAKEALKEAGFAVK 65 (66)
T ss_pred HHHHHHHHCCCCEEEEE----EEec-CCCCEEEEEE--CCHHHHHHHHHHCCCEEE
Confidence 45667778888664310 0000 0112344444 445 77888888887763
No 365
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=20.73 E-value=1.7e+02 Score=32.77 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=45.3
Q ss_pred CCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 018062 32 SYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 32 ~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
...|-.-|-|+|+++-++.++. +.||.+.|++--||..+.-|-.+|+..++
T Consensus 640 ~~~~~Pavlr~i~~~~~~a~~~-g~~v~vCGe~a~dp~~~~~L~glGi~~lS 690 (748)
T PRK11061 640 YDSLHPAMLRALKMIADEAEQH-GLPVSLCGEMAGDPMGALLLIGLGYRHLS 690 (748)
T ss_pred cCCCCHHHHHHHHHHHHHHhhC-cCEEEEcCCcccCHHHHHHHHHCCCcEEc
Confidence 4567788999999999888764 68999999999999999999999999876
No 366
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=20.72 E-value=3.2e+02 Score=27.37 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=44.7
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcCcccccccccccccc---cHHHHHHHHHHHHchhcCCcEEEEEcCCCC
Q 018062 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---CDATQERQDAMYKMVEEKVDLILVVGGWNS 293 (361)
Q Consensus 218 ~kv~vvsQTT~s~-~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTI---C~AT~~RQ~A~~eLa~~~vD~miVIGGknS 293 (361)
+++.+|+...+.. .-++++.+.|++. + .++.+++.+ |.-..-++ ++..+-..++|++|=|||-..
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~-----g-----~~~~~~~~v~~~p~~~~v~~-~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDA-----G-----LAAALFDEVPPNPTEAAVEA-GLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHc-----C-----CeEEEeCCCCCCCCHHHHHH-HHHHHHhcCCCEEEEeCCchH
Confidence 4788887655433 3467777766541 1 112223322 22222222 222222357999999999999
Q ss_pred chhHHHHHHHHh
Q 018062 294 SNTSHLQEIAED 305 (361)
Q Consensus 294 SNT~kL~eia~~ 305 (361)
-.+.|...+...
T Consensus 94 iD~aK~ia~~~~ 105 (370)
T cd08192 94 LDLAKAVALMAG 105 (370)
T ss_pred HHHHHHHHHHHh
Confidence 999998877644
No 367
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=20.71 E-value=3.6e+02 Score=24.09 Aligned_cols=79 Identities=13% Similarity=0.241 Sum_probs=51.8
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 018062 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (361)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l 115 (361)
.+.|+.|++...+... .+.+++++ +-||.-..+|-+.|+. +++.+-. .+. -.+|...+.++=-++++..+.+
T Consensus 58 i~sve~a~~~l~~~~~--~~~~v~vl---~k~~~da~~l~~~g~~-i~~iniG-~~~-~~~g~~~v~~~v~l~~~e~~~l 129 (151)
T TIGR00854 58 FVSLEKTINVIHKPAY--HDQTIFLL---FRNPQDVLTLVEGGVP-IKTVNVG-GMH-FSNGKKQITKKVSVDDQDITAF 129 (151)
T ss_pred EEEHHHHHHHHhCcCC--CCceEEEE---ECCHHHHHHHHHcCCC-CCEEEEC-Ccc-cCCCCEEEecceeeCHHHHHHH
Confidence 3678888887766332 24578875 7899999999999997 3322100 111 1247778888888888887666
Q ss_pred H---hcCCcE
Q 018062 116 N---NKNVQI 122 (361)
Q Consensus 116 ~---~kgl~V 122 (361)
+ ++|++|
T Consensus 130 ~~l~~~Gv~v 139 (151)
T TIGR00854 130 RFLKQRGVKL 139 (151)
T ss_pred HHHHHcCCEE
Confidence 4 345544
No 368
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=20.68 E-value=1.2e+02 Score=25.27 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=35.1
Q ss_pred cccchhHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEe
Q 018062 3 QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWIT 61 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~l 61 (361)
|.|-.++|+.|++.|..+..+.|.=.+-...-=| -.+++.+.+++-+.+-.+|++.
T Consensus 18 s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev---~~~i~~~~e~~~~~G~~Rv~t~ 73 (97)
T TIGR00106 18 SSYVAAAIEVLKESGLKYELHPMGTLIEGDLDEL---FEAIKAIHEAVLEKGSDRVYTS 73 (97)
T ss_pred HHHHHHHHHHHHHcCCCeEecCCccEEecCHHHH---HHHHHHHHHHHHHcCCCeEEEE
Confidence 5788999999999999999998865554332222 2344444444433222356554
No 369
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=20.66 E-value=4.2e+02 Score=25.30 Aligned_cols=104 Identities=17% Similarity=0.076 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCC
Q 018062 229 LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGI 308 (361)
Q Consensus 229 s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~ 308 (361)
+.+...++.+-+++.+...-..+ .+-++.+.|+-=+.+.-++ .+++|.+.+.|+++.+|..- ++-+++--... .
T Consensus 9 ~~~~~~~~~~gf~~~L~~~g~~~-~~~~~~~~~a~~d~~~~~~-~~~~l~~~~~DlIi~~gt~a---a~~~~~~~~~~-i 82 (294)
T PF04392_consen 9 SHPALDDIVRGFKDGLKELGYDE-KNVEIEYKNAEGDPEKLRQ-IARKLKAQKPDLIIAIGTPA---AQALAKHLKDD-I 82 (294)
T ss_dssp --HHHHHHHHHHHHHHHHTT--C-CCEEEEEEE-TT-HHHHHH-HHHHHCCTS-SEEEEESHHH---HHHHHHH-SS--S
T ss_pred ccHHHHHHHHHHHHHHHHcCCcc-ccEEEEEecCCCCHHHHHH-HHHHHhcCCCCEEEEeCcHH---HHHHHHhcCCC-c
Confidence 34446666666666554443322 2234445555444443333 33456557999999998644 44454444332 6
Q ss_pred CeEEeCCCCCCCCCCccccccccceeEEEee
Q 018062 309 PSYWIDSEKRIGPGNKIAYKLMVCVNILNFT 339 (361)
Q Consensus 309 ~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~ 339 (361)
|..+.. +.|-...+....++..+.|+-|+.
T Consensus 83 PVVf~~-V~dp~~~~l~~~~~~~~~nvTGv~ 112 (294)
T PF04392_consen 83 PVVFCG-VSDPVGAGLVDSLDRPGKNVTGVS 112 (294)
T ss_dssp -EEEEC-ES-TTTTTS-S-SSS--SSEEEEE
T ss_pred EEEEEe-ccChhhhhccccccCCCCCEEEEE
Confidence 766554 444444555555556667777877
No 370
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=20.64 E-value=2.8e+02 Score=24.18 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCC-c--EEeCc--ChhhHHHHHHHHHHhh
Q 018062 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV-Q--IVDTT--CPWVSKVWTSVEKHKK 142 (361)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl-~--ViDAT--CP~V~kv~~~v~~~~~ 142 (361)
+.+++.|+++|+++.- + .|| -.......+++.|+ . +.--. =|.=+-..+.++++..
T Consensus 133 ~~~l~~L~~~Gi~~~i----------~-TGD--------~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~ 193 (215)
T PF00702_consen 133 KEALQELKEAGIKVAI----------L-TGD--------NESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQV 193 (215)
T ss_dssp HHHHHHHHHTTEEEEE----------E-ESS--------EHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTC
T ss_pred hhhhhhhhccCcceee----------e-ecc--------ccccccccccccccccccccccccccccchhHHHHHHHHhc
Confidence 6778888888886542 1 233 12344556666777 3 33222 2655656777788775
Q ss_pred CCCeEEEEecC
Q 018062 143 GDYTSIIHGKY 153 (361)
Q Consensus 143 ~Gy~IIIiG~~ 153 (361)
++..++.+||.
T Consensus 194 ~~~~v~~vGDg 204 (215)
T PF00702_consen 194 KPGEVAMVGDG 204 (215)
T ss_dssp TGGGEEEEESS
T ss_pred CCCEEEEEccC
Confidence 77799999974
No 371
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=20.62 E-value=4e+02 Score=23.94 Aligned_cols=79 Identities=11% Similarity=0.205 Sum_probs=53.0
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 018062 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (361)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l 115 (361)
.+.|+.|++...+ . +.+.+++++ +-||+-..+|-+.|+. +++.+-. .+. -.+|...+.++=-++++..+.+
T Consensus 60 i~sv~~a~~~l~~-~--~~~~~v~il---~k~~~d~~~l~~~g~~-i~~iNvG-~~~-~~~g~~~i~~~v~l~~~e~~~l 130 (157)
T PRK11425 60 FWTLQKVIDNIHR-A--ADRQKILLV---CKTPADFLTLVKGGVP-VNRINVG-NMH-YANGKQQIAKTVSVDAGDIAAF 130 (157)
T ss_pred EEEHHHHHHHHhc-c--CCCceEEEE---ECCHHHHHHHHHcCCC-CCEEEEC-Ccc-cCCCCEEEecceeeCHHHHHHH
Confidence 3688999888876 2 224578865 7899999999999997 4332100 111 1246778888889999887666
Q ss_pred Hh---cCCcEE
Q 018062 116 NN---KNVQIV 123 (361)
Q Consensus 116 ~~---kgl~Vi 123 (361)
++ +|++|.
T Consensus 131 k~l~~~Gv~v~ 141 (157)
T PRK11425 131 NDLKAAGVECF 141 (157)
T ss_pred HHHHHcCCEEE
Confidence 43 555553
No 372
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=20.59 E-value=5.3e+02 Score=22.93 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=26.7
Q ss_pred cCCcEEeCcChhhH--HHHHHHHHHhhCCCeEEEEecCCCc
Q 018062 118 KNVQIVDTTCPWVS--KVWTSVEKHKKGDYTSIIHGKYSHE 156 (361)
Q Consensus 118 kgl~ViDATCP~V~--kv~~~v~~~~~~Gy~IIIiG~~~Hp 156 (361)
..+-++++++||+. -+.+.+..+.+.++..++--.+.++
T Consensus 99 d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 139 (223)
T cd02513 99 DIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHR 139 (223)
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence 35678999999996 5666777776666666665544443
No 373
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=20.58 E-value=43 Score=30.23 Aligned_cols=16 Identities=44% Similarity=0.939 Sum_probs=13.4
Q ss_pred CCCCcccHHHHHHHHH
Q 018062 32 SYGFCWGVERAVQIAY 47 (361)
Q Consensus 32 ~~GFC~GV~RAI~~a~ 47 (361)
-.|||+|-.-|+.++.
T Consensus 102 ~vGfc~GG~~a~~~a~ 117 (218)
T PF01738_consen 102 VVGFCWGGKLALLLAA 117 (218)
T ss_dssp EEEETHHHHHHHHHHC
T ss_pred EEEEecchHHhhhhhh
Confidence 3599999999998773
No 374
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=20.58 E-value=3e+02 Score=27.52 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=45.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccc-cHHHHHHHHHHHHch-hcCCcEEEEEcCCCCch
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI-CDATQERQDAMYKMV-EEKVDLILVVGGWNSSN 295 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTI-C~AT~~RQ~A~~eLa-~~~vD~miVIGGknSSN 295 (361)
+|+.+|+-.+.. ....+.+.|++ . +.++.+++.+ .++|.+.=+++.+++ +..+|++|-|||-.+-.
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~-----~-----~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D 91 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKP-----L-----GTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLD 91 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHH-----c-----CCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHH
Confidence 478888755443 34455555543 1 1123445444 345544444444443 34699999999999999
Q ss_pred hHHHHHHHH
Q 018062 296 TSHLQEIAE 304 (361)
Q Consensus 296 T~kL~eia~ 304 (361)
+.|...+.-
T Consensus 92 ~aK~ia~~~ 100 (367)
T cd08182 92 TAKALAALL 100 (367)
T ss_pred HHHHHHHHH
Confidence 999877653
No 375
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=20.57 E-value=2.8e+02 Score=25.57 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=38.4
Q ss_pred CCCCCHHH-HHHHHhcCCcE--EeCcCh---hhHHHHHHHHHHhhCCCeEEEEecCC
Q 018062 104 AFGAAVEE-MVTLNNKNVQI--VDTTCP---WVSKVWTSVEKHKKGDYTSIIHGKYS 154 (361)
Q Consensus 104 AHGv~~~v-~~~l~~kgl~V--iDATCP---~V~kv~~~v~~~~~~Gy~IIIiG~~~ 154 (361)
.|+++.+. ...+++.|+.+ +|..|. +++.+.+..+++.++|+..|+.|+-.
T Consensus 42 ~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~ 98 (194)
T cd01994 42 YHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVFGAIL 98 (194)
T ss_pred ccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 58777665 45667788764 666664 77888888888888899999999643
No 376
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.44 E-value=5.2e+02 Score=25.05 Aligned_cols=135 Identities=9% Similarity=0.025 Sum_probs=67.0
Q ss_pred HHHHHHHhhCCCeEEEEecCCCceeeeecccCCcEEEEcChh-hhHhhhccccCCCCCCCCCcHHHHHHHHHhhhcCCCC
Q 018062 134 WTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMK-EAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFD 212 (361)
Q Consensus 134 ~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~~~ivv~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (361)
+..++.+.+.||.|.+++...-+........ .+.+++.-+. .++. .++++... ..+
T Consensus 17 ~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~-advvi~~vp~~~~~~-------------------v~~~l~~~---~~~ 73 (308)
T PRK14619 17 STLAGLASANGHRVRVWSRRSGLSLAAVLAD-ADVIVSAVSMKGVRP-------------------VAEQVQAL---NLP 73 (308)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCCHHHHHhc-CCEEEEECChHHHHH-------------------HHHHHHHh---cCC
Confidence 4567888899999988886543322222211 2444443332 2322 23333210 011
Q ss_pred CCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCC
Q 018062 213 PDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWN 292 (361)
Q Consensus 213 ~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGkn 292 (361)
+ ..+.+-+.+.++.+....+.+.+...+ .. ..+.....-+ .+.+++ .......+++|.+
T Consensus 74 ~----~~ivi~~s~gi~~~~~~~~s~~~~~~~----~~----~~v~~i~gp~--------~a~ei~-~~~~~~~~~ag~~ 132 (308)
T PRK14619 74 P----ETIIVTATKGLDPETTRTPSQIWQAAF----PN----HPVVVLSGPN--------LSKEIQ-QGLPAATVVASRD 132 (308)
T ss_pred C----CcEEEEeCCcccCCCCcCHHHHHHHHc----CC----CceEEEECCC--------cHHHHh-cCCCeEEEEEeCC
Confidence 1 244444444476665555555554432 11 0111111111 444554 3445556677777
Q ss_pred CchhHHHHHHHHhcCCCeEE
Q 018062 293 SSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~ 312 (361)
-....++.++....+.++|.
T Consensus 133 ~~~~~~v~~ll~~~~~~~~~ 152 (308)
T PRK14619 133 LAAAETVQQIFSSERFRVYT 152 (308)
T ss_pred HHHHHHHHHHhCCCcEEEEe
Confidence 77788888888766655564
No 377
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.42 E-value=1.4e+02 Score=29.51 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=21.5
Q ss_pred HHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCC
Q 018062 275 YKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 275 ~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
.++. .++|+++++||-..=. +-+......+.|..-|..
T Consensus 58 ~~~~-~~~d~vi~lGGDGT~L--~aa~~~~~~~~Pilgin~ 95 (292)
T PRK03378 58 AEIG-QQADLAIVVGGDGNML--GAARVLARYDIKVIGINR 95 (292)
T ss_pred hhcC-CCCCEEEEECCcHHHH--HHHHHhcCCCCeEEEEEC
Confidence 4564 5799999999976522 112222233456555543
No 378
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=20.37 E-value=5.6e+02 Score=23.10 Aligned_cols=56 Identities=7% Similarity=-0.088 Sum_probs=41.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCC
Q 018062 100 VVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSH 155 (361)
Q Consensus 100 VIIrAHGv~~~v~~~l~~kgl~-ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~H 155 (361)
+.|-+-+-.+.....++..|+. ..|..-|.-.-++..++++.-..-.++.+||...
T Consensus 53 laIiT~k~~~~~~~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~n 109 (169)
T TIGR02726 53 VAIITSKKSGAVRHRAEELKIKRFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLV 109 (169)
T ss_pred EEEEECCCcHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHHcCcCHHHEEEECCCHH
Confidence 3344445566778888888885 5788888888888888887666678999999863
No 379
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.36 E-value=1.8e+02 Score=25.71 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=31.9
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++=|++|++.- .++..+..+++.|++.|.++..|.+..+
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 56899998875 4566778899999999999999987654
No 380
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=20.35 E-value=1.4e+02 Score=23.52 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=38.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccCC
Q 018062 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG 166 (361)
Q Consensus 99 ~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a~ 166 (361)
.+|+=.||...-.- +-+..++.++++||.|+.+=.++|-...|..|+.+
T Consensus 17 ~~v~i~HG~~eh~~-------------------ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~ 65 (79)
T PF12146_consen 17 AVVVIVHGFGEHSG-------------------RYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHID 65 (79)
T ss_pred EEEEEeCCcHHHHH-------------------HHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccC
Confidence 47777899865432 33456789999999999999999999998777653
No 381
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=20.32 E-value=7.1e+02 Score=25.61 Aligned_cols=105 Identities=10% Similarity=0.144 Sum_probs=54.1
Q ss_pred ceEEEEeCCCCCcc----cHHHHHHHHHHHHhh--CCCCceEEecccccC--HHHHHHHHHcCcEEecCCcc--cccccc
Q 018062 24 NVKVKLAESYGFCW----GVERAVQIAYEARKQ--FPEEKIWITNEIIHN--PTVNKRLEEMAVQNIPVEEG--KKQFDV 93 (361)
Q Consensus 24 ~mkI~lA~~~GFC~----GV~RAI~~a~~~~~~--~~~~~Vy~lG~iIHN--~~Vv~~L~~~GV~~v~~~~~--~~~l~e 93 (361)
+..|+-+...||.. |...|++...+.+.+ ...+.|-.+|++--. .++..-|++.|+.++.-.++ ..++..
T Consensus 129 ~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~~~~~d~~~ 208 (427)
T PRK02842 129 GVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPARRFTELPA 208 (427)
T ss_pred CCeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCCccHHHHhh
Confidence 45788888999953 344444433333321 113468889984322 33666678999987522221 112222
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChh
Q 018062 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (361)
Q Consensus 94 l~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~ 129 (361)
.+.+..++. .+......-+.|++.|...+-..-|+
T Consensus 209 ~~~~~~~~~-~~~~~~~~A~~L~~~GiP~~~~~~P~ 243 (427)
T PRK02842 209 IGPGTVVAL-AQPFLSDTARALRERGAKVLTAPFPL 243 (427)
T ss_pred cCcCcEEEE-eCHHHHHHHHHHHHcCCccccCCCCc
Confidence 223333322 22221234555566677766655555
No 382
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=20.29 E-value=2.2e+02 Score=27.83 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=33.0
Q ss_pred HHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEeCC
Q 018062 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~Ie~ 315 (361)
..+.+.+.+ .++|++||||-..+.... .|.+.+.+.|.+.+.|.-
T Consensus 204 ~~~~a~~~~--~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~ 249 (285)
T PRK05333 204 RVAAARAAL--DAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNL 249 (285)
T ss_pred HHHHHHHHH--hcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECC
Confidence 344555555 369999999987777655 678889888887676664
No 383
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=20.29 E-value=4.4e+02 Score=25.33 Aligned_cols=44 Identities=14% Similarity=-0.006 Sum_probs=35.5
Q ss_pred CHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEec
Q 018062 108 AVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGK 152 (361)
Q Consensus 108 ~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~ 152 (361)
+.+.|+.+++.+. +.=+.||-+....+..+++.++|+.|+.+.=
T Consensus 43 ~~~~y~~~~~~~~-~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~i 86 (275)
T TIGR00762 43 PEEFYEKLKESKE-LPKTSQPSPGEFLELYEKLLEEGDEVLSIHL 86 (275)
T ss_pred HHHHHHHHHhcCC-CCCcCCCCHHHHHHHHHHHHhCCCeEEEEEc
Confidence 3566777766443 4469999999999999999999999998863
No 384
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=20.28 E-value=5.8e+02 Score=22.19 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=54.4
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCC--ceEEecccc------cCHH--HHHHHHHcCcEEecCCcccccccc
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEE--KIWITNEII------HNPT--VNKRLEEMAVQNIPVEEGKKQFDV 93 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~--~Vy~lG~iI------HN~~--Vv~~L~~~GV~~v~~~~~~~~l~e 93 (361)
.|||+.=-.. =-.+..++.-+...++..+.. .|..+|+=| +|+- .+..|.++||.|.-=
T Consensus 3 ~~kVV~hv~~--~~k~~~~l~Nl~Nll~~~p~~~IeVV~~g~ai~~l~~~~~~~~~~~~~L~~~GV~~~aC--------- 71 (112)
T COG1416 3 RMKVVYHVDE--ESKVNMVLGNLTNLLEDDPSVEIEVVAHGPAIAFLSEKANIAAVRVAELAQQGVEFVAC--------- 71 (112)
T ss_pred ceEEEEEecc--HHHHHHHHHHHHHHhcCCCCceEEEEEeCchhHHhhhhccchhHHHHHHHHCCCEEEEe---------
Confidence 4555543222 345555666666666544322 244455443 3444 678899999998731
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 018062 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (361)
Q Consensus 94 l~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~II 148 (361)
..+ +||||++.+.+ -.|.++++|-=--|.+.| ++||-.|
T Consensus 72 --~nS---l~a~~i~~d~L----~~gv~vVpaGv~ev~~~q-------~eG~aYi 110 (112)
T COG1416 72 --GNS---LRAHDIDEDDL----LDGVTVVPAGVVEVLKLQ-------QEGYAYI 110 (112)
T ss_pred --cch---HHHcCCCHHHh----cCCcEEEcchHHHHHHHh-------hCCeEEe
Confidence 123 68888885432 148888877633333322 4777544
No 385
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.22 E-value=3.6e+02 Score=28.10 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=38.3
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHc--CcEEecCCccccccccccCCCEEEEcCCCCCH------HHHHHHH
Q 018062 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV------EEMVTLN 116 (361)
Q Consensus 45 ~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~--GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~------~v~~~l~ 116 (361)
+|.-+.+. +-.|+..- .-.++...+.|++. |+.+..... ..+.+.+-|.||+ +=|+++ ..+.+|+
T Consensus 22 ~a~~L~~~--G~~v~~~D-~~~~~~~~~~L~~~~~~~~~~~g~~---~~~~~~~~d~vv~-sp~I~~~~~~~~~~~~~a~ 94 (498)
T PRK02006 22 MARWCARH--GARLRVAD-TREAPPNLAALRAELPDAEFVGGPF---DPALLDGVDLVAL-SPGLSPLEAALAPLVAAAR 94 (498)
T ss_pred HHHHHHHC--CCEEEEEc-CCCCchhHHHHHhhcCCcEEEeCCC---chhHhcCCCEEEE-CCCCCCcccccCHHHHHHH
Confidence 44444443 33455433 22344345678888 566543210 1122233354555 455887 6788888
Q ss_pred hcCCcEE
Q 018062 117 NKNVQIV 123 (361)
Q Consensus 117 ~kgl~Vi 123 (361)
++|+.|+
T Consensus 95 ~~~i~v~ 101 (498)
T PRK02006 95 ERGIPVW 101 (498)
T ss_pred HCCCcEE
Confidence 8888887
No 386
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=20.20 E-value=7e+02 Score=23.14 Aligned_cols=26 Identities=4% Similarity=-0.031 Sum_probs=19.9
Q ss_pred eEEecccccCHHHHHHHHHcCcEEec
Q 018062 58 IWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 58 Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
.|..----.|+.+.+.|++.|.+++.
T Consensus 132 ~fR~P~G~~~~~~~~~l~~~Gy~~v~ 157 (224)
T TIGR02884 132 YFRPPRGVFSERTLAYTKELGYYTVF 157 (224)
T ss_pred EEeCCCCCcCHHHHHHHHHcCCcEEe
Confidence 44444445799999999999999874
No 387
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=20.09 E-value=6.4e+02 Score=22.63 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=44.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHH
Q 018062 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 299 (361)
Q Consensus 220 v~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL 299 (361)
++++.- +++..-|.++..-+++...+. + -++.+.++- +-++..+.|.+..+|.+|+.+... +...
T Consensus 2 igvv~~-~~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~-----~~~~~~~~l~~~~vdgii~~~~~~--~~~~- 66 (261)
T cd06272 2 IGLIWP-SVSRVALTELVTGINQAISKN-G-----YNMNVSITP-----SLAEAEDLFKENRFDGVIIFGESA--SDVE- 66 (261)
T ss_pred EEEEec-CCCchhHHHHHHHHHHHHHHc-C-----CEEEEEecc-----cHHHHHHHHHHcCcCEEEEeCCCC--ChHH-
Confidence 445543 345566777777776643321 1 122222221 112334445446899999987532 2222
Q ss_pred HHHHHhcCCCeEEeCCCC
Q 018062 300 QEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 300 ~eia~~~~~~t~~Ie~~~ 317 (361)
++...+.+.|...+++..
T Consensus 67 ~~~~~~~~ipvV~~~~~~ 84 (261)
T cd06272 67 YLYKIKLAIPVVSYGVDY 84 (261)
T ss_pred HHHHHHcCCCEEEEcccC
Confidence 344457788999998753
No 388
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.03 E-value=6.5e+02 Score=22.69 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHH-chhcCCcEEEEEcCCCCchhHHHHHHHHhc
Q 018062 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWNSSNTSHLQEIAEDR 306 (361)
Q Consensus 228 ~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~e-La~~~vD~miVIGGknSSNT~kL~eia~~~ 306 (361)
++-.-|..+.+-+++.+... + -.+....+=... +.|..+.+ |.+..+|.+++.+...+ . .++.+.+.
T Consensus 12 ~~~~~~~~~~~~i~~~~~~~-g-----~~~~~~~~~~~~--~~~~~~~~~l~~~~vdgiii~~~~~~---~-~~~~l~~~ 79 (268)
T cd06277 12 NSPAFYSEIYRAIEEEAKKY-G-----YNLILKFVSDED--EEEFELPSFLEDGKVDGIILLGGIST---E-YIKEIKEL 79 (268)
T ss_pred ccCCcHHHHHHHHHHHHHHc-C-----CEEEEEeCCCCh--HHHHHHHHHHHHCCCCEEEEeCCCCh---H-HHHHHhhc
Confidence 44555677776666544322 1 122222222222 34444433 43468999999874322 2 24455677
Q ss_pred CCCeEEeCCC
Q 018062 307 GIPSYWIDSE 316 (361)
Q Consensus 307 ~~~t~~Ie~~ 316 (361)
+.|..+++..
T Consensus 80 ~ipvV~~~~~ 89 (268)
T cd06277 80 GIPFVLVDHY 89 (268)
T ss_pred CCCEEEEccC
Confidence 8898888754
No 389
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=20.01 E-value=1.3e+02 Score=32.97 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=103.8
Q ss_pred cchhHHHHHHHcCC-------cccccceEEEEeCCCCCcccHHHH------HHHHHHHHhhCCCCceE-EecccccCHHH
Q 018062 5 YTSDIIKKLKENGF-------EYTWGNVKVKLAESYGFCWGVERA------VQIAYEARKQFPEEKIW-ITNEIIHNPTV 70 (361)
Q Consensus 5 ~~~~~~~~~~~~~~-------~~~~~~mkI~lA~~~GFC~GV~RA------I~~a~~~~~~~~~~~Vy-~lG~iIHN~~V 70 (361)
--|+||...|..|. +.+...|-|..|.- -|+-|=-.| ++...+++++-+..-|+ =||=|--|+..
T Consensus 13 IAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADE-Av~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPGYGFLSENa~F 91 (645)
T COG4770 13 IACRVIRTARDLGIRTVAVYSDADADALHVRMADE-AVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADF 91 (645)
T ss_pred hhHHHHHHHHHcCCceEEEEecCCCCchhhhhcch-hhhcCCCchhhhhccHHHHHHHHHHhCcccccCCccccccCHHH
Confidence 45788888888872 33334555555533 233332221 11112222221112233 37889999999
Q ss_pred HHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEE
Q 018062 71 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (361)
Q Consensus 71 v~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIi 150 (361)
.+.+++.|+.+|-- |.++ |||-|--..-++.+.+.|+.+|=.+=--+...-..++...+=||.|.|
T Consensus 92 A~a~~~aGlvfIGP----------~~~a---I~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlI- 157 (645)
T COG4770 92 AQAVEDAGLVFIGP----------SAGA---IRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLI- 157 (645)
T ss_pred HHHHHHCCcEEECC----------CHHH---HHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEE-
Confidence 99999999999962 2233 888888888899999999999988888888888888888888999987
Q ss_pred ecCCCceeeeecccCCc-EEEEcChhhhHhhhc
Q 018062 151 GKYSHEETVATASFAGK-YIIVKNMKEAEYVCD 182 (361)
Q Consensus 151 G~~~HpEV~gi~g~a~~-~ivv~~~~e~~~~~~ 182 (361)
++-.|=.++ .-++.+++|+....+
T Consensus 158 --------KAsaGGGGKGMRvv~~~~e~~e~l~ 182 (645)
T COG4770 158 --------KASAGGGGKGMRVVETPEEFAEALE 182 (645)
T ss_pred --------EeccCCCCCceEeecCHHHHHHHHH
Confidence 444444444 578888888776543
Done!