Query 018062
Match_columns 361
No_of_seqs 111 out of 1050
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dnf_A ISPH, LYTB, 4-hydroxy-3 100.0 6.2E-91 2.1E-95 671.6 26.6 258 24-340 1-262 (297)
2 3szu_A ISPH, 4-hydroxy-3-methy 100.0 7.8E-91 2.7E-95 678.2 26.3 265 22-340 10-278 (328)
3 3dnf_A ISPH, LYTB, 4-hydroxy-3 95.4 0.25 8.6E-06 47.7 14.0 170 35-242 95-280 (297)
4 3szu_A ISPH, 4-hydroxy-3-methy 95.1 0.28 9.5E-06 48.0 13.3 172 36-242 108-296 (328)
5 3jx9_A Putative phosphoheptose 80.6 4.6 0.00016 35.6 7.4 68 39-115 24-97 (170)
6 3d8t_A Uroporphyrinogen-III sy 80.0 28 0.00095 31.9 13.0 117 6-127 44-187 (286)
7 2xdq_A Light-independent proto 78.4 33 0.0011 33.8 13.7 114 24-140 128-286 (460)
8 1wcw_A Uroporphyrinogen III sy 77.8 22 0.00076 31.7 11.4 117 6-127 19-162 (261)
9 2k1g_A Lipoprotein SPR; soluti 76.1 2.3 7.8E-05 36.2 3.9 76 1-104 1-78 (135)
10 3o3m_B Beta subunit 2-hydroxya 71.8 2.2 7.4E-05 41.8 3.1 53 32-84 198-258 (385)
11 1s3l_A Hypothetical protein MJ 70.8 17 0.00058 31.5 8.4 62 18-84 18-83 (190)
12 4eyg_A Twin-arginine transloca 68.8 19 0.00065 32.8 8.7 93 219-315 8-104 (368)
13 3aek_A Light-independent proto 68.8 35 0.0012 33.7 11.1 104 24-130 148-261 (437)
14 3h75_A Periplasmic sugar-bindi 67.7 31 0.0011 31.5 10.0 91 218-318 4-97 (350)
15 3ksm_A ABC-type sugar transpor 63.2 49 0.0017 28.5 10.0 91 219-317 2-94 (276)
16 8abp_A L-arabinose-binding pro 62.8 44 0.0015 29.5 9.7 86 219-315 4-90 (306)
17 2yva_A DNAA initiator-associat 62.8 29 0.00099 29.4 8.2 23 94-116 107-130 (196)
18 3p9z_A Uroporphyrinogen III co 61.1 15 0.00051 32.7 6.3 69 55-128 67-147 (229)
19 3ipc_A ABC transporter, substr 60.3 35 0.0012 30.9 8.7 57 256-315 45-101 (356)
20 3hcn_A Ferrochelatase, mitocho 59.4 74 0.0025 31.0 11.3 118 6-143 106-226 (359)
21 3trj_A Phosphoheptose isomeras 59.0 45 0.0015 29.1 8.9 23 94-116 112-135 (201)
22 3i45_A Twin-arginine transloca 58.8 50 0.0017 30.5 9.7 58 255-315 47-105 (387)
23 2h1v_A Ferrochelatase; rossman 58.6 22 0.00075 33.6 7.2 92 36-143 119-210 (310)
24 3obb_A Probable 3-hydroxyisobu 58.1 58 0.002 30.4 10.0 94 44-148 17-119 (300)
25 3hut_A Putative branched-chain 57.2 32 0.0011 31.2 7.9 95 218-315 5-104 (358)
26 3g1w_A Sugar ABC transporter; 57.0 78 0.0027 27.9 10.3 90 218-317 5-96 (305)
27 3mmz_A Putative HAD family hyd 56.9 36 0.0012 28.5 7.6 67 70-155 47-113 (176)
28 3eag_A UDP-N-acetylmuramate:L- 56.5 29 0.001 32.5 7.7 63 56-123 29-94 (326)
29 2h3h_A Sugar ABC transporter, 56.3 66 0.0023 28.7 9.8 88 219-316 3-91 (313)
30 4es6_A Uroporphyrinogen-III sy 54.8 22 0.00074 31.9 6.2 115 6-125 18-162 (254)
31 1x92_A APC5045, phosphoheptose 54.6 61 0.0021 27.5 8.9 35 94-128 111-149 (199)
32 3uug_A Multiple sugar-binding 54.6 68 0.0023 28.6 9.6 90 218-317 4-94 (330)
33 3mw8_A Uroporphyrinogen-III sy 54.4 19 0.00065 31.9 5.7 115 4-123 11-147 (240)
34 3k4h_A Putative transcriptiona 53.2 1.1E+02 0.0039 26.5 11.0 90 218-318 9-103 (292)
35 3td9_A Branched chain amino ac 52.7 16 0.00055 33.4 5.1 94 218-315 17-113 (366)
36 4gbj_A 6-phosphogluconate dehy 52.3 36 0.0012 31.7 7.5 94 44-148 19-119 (297)
37 3tb6_A Arabinose metabolism tr 51.9 99 0.0034 26.9 10.0 91 218-317 16-109 (298)
38 2dri_A D-ribose-binding protei 51.8 1.1E+02 0.0038 26.5 10.4 90 218-317 2-92 (271)
39 3dfz_A SIRC, precorrin-2 dehyd 51.7 62 0.0021 29.3 8.8 107 4-125 11-121 (223)
40 3re1_A Uroporphyrinogen-III sy 51.7 41 0.0014 30.5 7.7 117 5-126 25-171 (269)
41 3m9w_A D-xylose-binding peripl 51.4 70 0.0024 28.5 9.1 90 218-317 3-93 (313)
42 2qh8_A Uncharacterized protein 50.8 66 0.0023 28.8 8.9 90 218-315 9-98 (302)
43 3n0x_A Possible substrate bind 50.1 14 0.00048 34.3 4.3 54 255-311 47-101 (374)
44 3j21_Z 50S ribosomal protein L 50.0 40 0.0014 26.4 6.3 43 279-322 29-73 (99)
45 2ioy_A Periplasmic sugar-bindi 49.9 1.3E+02 0.0045 26.2 10.8 88 219-316 3-91 (283)
46 3ff4_A Uncharacterized protein 49.8 25 0.00084 29.0 5.3 31 100-131 86-116 (122)
47 4f06_A Extracellular ligand-bi 49.5 7.7 0.00026 36.2 2.4 58 256-314 46-103 (371)
48 3brq_A HTH-type transcriptiona 49.2 1.3E+02 0.0045 26.0 10.5 88 218-316 20-110 (296)
49 3o21_A Glutamate receptor 3; p 48.9 11 0.00039 35.6 3.5 53 256-311 44-97 (389)
50 1m3s_A Hypothetical protein YC 48.1 96 0.0033 25.8 9.0 22 94-115 77-99 (186)
51 3dbi_A Sugar-binding transcrip 48.0 1.5E+02 0.005 26.8 10.8 90 218-317 62-153 (338)
52 2kkn_A Uncharacterized protein 47.2 64 0.0022 27.5 7.8 83 56-159 52-143 (178)
53 3hsy_A Glutamate receptor 2; l 46.9 12 0.00043 34.9 3.4 55 256-312 35-89 (376)
54 1lbq_A Ferrochelatase; rossman 46.6 99 0.0034 30.0 9.9 70 58-143 162-231 (362)
55 3n0w_A ABC branched chain amin 45.8 22 0.00076 32.8 4.9 57 255-314 47-104 (379)
56 4gnr_A ABC transporter substra 45.7 18 0.00061 33.0 4.2 56 256-313 50-105 (353)
57 2xvy_A Chelatase, putative; me 45.6 83 0.0029 28.4 8.7 93 8-109 52-158 (269)
58 3d02_A Putative LACI-type tran 45.6 83 0.0028 27.6 8.5 89 218-316 5-95 (303)
59 3h5l_A Putative branched-chain 45.5 15 0.00052 34.5 3.8 57 255-313 56-113 (419)
60 3snr_A Extracellular ligand-bi 45.5 22 0.00075 32.0 4.7 58 256-316 44-102 (362)
61 3sg0_A Extracellular ligand-bi 45.4 23 0.00079 32.3 4.9 58 256-316 64-122 (386)
62 3qek_A NMDA glutamate receptor 45.4 74 0.0025 29.4 8.5 57 256-314 40-101 (384)
63 1jr2_A Uroporphyrinogen-III sy 45.3 51 0.0018 30.0 7.3 114 7-125 38-186 (286)
64 3l6u_A ABC-type sugar transpor 45.2 1.5E+02 0.0052 25.7 11.4 91 218-318 9-100 (293)
65 1jeo_A MJ1247, hypothetical pr 45.1 1.1E+02 0.0038 25.3 8.9 22 94-115 80-102 (180)
66 3o74_A Fructose transport syst 45.0 1.1E+02 0.0038 26.2 9.2 89 218-317 3-92 (272)
67 2xbl_A Phosphoheptose isomeras 44.9 96 0.0033 26.0 8.5 23 94-116 114-137 (198)
68 1fy2_A Aspartyl dipeptidase; s 44.5 88 0.003 27.9 8.6 109 25-151 1-118 (229)
69 1usg_A Leucine-specific bindin 43.3 24 0.00082 31.7 4.6 57 256-315 45-101 (346)
70 3gbv_A Putative LACI-family tr 43.1 1.5E+02 0.005 25.8 9.7 94 218-317 9-104 (304)
71 3i09_A Periplasmic branched-ch 43.0 19 0.00065 33.2 3.9 57 256-314 46-102 (375)
72 3k9c_A Transcriptional regulat 43.0 97 0.0033 27.3 8.6 86 218-317 13-98 (289)
73 3lop_A Substrate binding perip 42.1 84 0.0029 28.6 8.2 96 219-316 7-108 (364)
74 2a22_A Vacuolar protein sortin 41.9 64 0.0022 28.1 7.1 68 16-84 17-86 (215)
75 1eiw_A Hypothetical protein MT 41.1 28 0.00094 28.5 4.2 41 275-317 34-77 (111)
76 3rot_A ABC sugar transporter, 40.5 1.9E+02 0.0065 25.4 10.8 93 218-318 4-97 (297)
77 3d8u_A PURR transcriptional re 40.5 1.8E+02 0.006 25.0 10.4 87 218-316 4-91 (275)
78 2p9j_A Hypothetical protein AQ 40.4 75 0.0026 25.5 6.8 74 68-161 42-116 (162)
79 3hno_A Pyrophosphate-dependent 39.9 16 0.00056 36.5 3.1 55 268-322 91-146 (419)
80 1dp4_A Atrial natriuretic pept 39.8 22 0.00076 33.4 4.0 56 256-313 47-107 (435)
81 1gud_A ALBP, D-allose-binding 39.7 1.4E+02 0.0049 26.1 9.2 90 219-316 3-93 (288)
82 3hn7_A UDP-N-acetylmuramate-L- 39.5 63 0.0021 32.5 7.4 93 19-123 14-108 (524)
83 2fb6_A Conserved hypothetical 39.5 15 0.00052 30.0 2.4 99 25-149 8-116 (117)
84 2vhw_A Alanine dehydrogenase; 39.4 1.5E+02 0.005 28.4 9.8 43 90-132 81-132 (377)
85 1tk9_A Phosphoheptose isomeras 38.6 1.1E+02 0.0039 25.3 8.0 34 94-127 108-145 (188)
86 4evq_A Putative ABC transporte 38.4 80 0.0027 28.6 7.4 96 218-316 17-115 (375)
87 3lkb_A Probable branched-chain 38.2 30 0.001 32.0 4.5 57 256-316 50-107 (392)
88 3etn_A Putative phosphosugar i 37.6 1.2E+02 0.0042 26.5 8.3 97 39-137 44-153 (220)
89 2cc0_A Acetyl-xylan esterase; 37.6 1.9E+02 0.0065 24.6 10.9 95 39-153 77-185 (195)
90 1tjy_A Sugar transport protein 37.5 2E+02 0.0069 25.7 10.0 90 218-316 4-94 (316)
91 2vk2_A YTFQ, ABC transporter p 37.5 2.1E+02 0.0074 25.1 10.4 89 218-316 3-92 (306)
92 2rgy_A Transcriptional regulat 37.0 2.1E+02 0.0072 25.0 9.8 87 218-316 9-99 (290)
93 3brs_A Periplasmic binding pro 36.9 1.3E+02 0.0045 26.1 8.4 92 218-316 6-99 (289)
94 3l49_A ABC sugar (ribose) tran 36.8 2.1E+02 0.0071 24.8 10.9 90 218-317 6-96 (291)
95 3jy6_A Transcriptional regulat 36.5 2.1E+02 0.0071 24.7 11.4 87 218-317 8-95 (276)
96 4f11_A Gamma-aminobutyric acid 36.5 16 0.00054 34.6 2.3 58 255-313 58-115 (433)
97 2rjo_A Twin-arginine transloca 36.3 1.8E+02 0.0061 26.1 9.4 89 218-316 6-97 (332)
98 3huu_A Transcription regulator 36.3 2.2E+02 0.0077 25.0 10.4 89 218-317 23-116 (305)
99 4dll_A 2-hydroxy-3-oxopropiona 35.5 1.9E+02 0.0066 26.6 9.7 106 24-147 31-145 (320)
100 1t1j_A Hypothetical protein; s 35.5 26 0.00089 29.4 3.2 39 275-314 77-118 (125)
101 2jyx_A Lipoprotein SPR; soluti 35.1 40 0.0014 28.0 4.4 76 1-104 1-78 (136)
102 1w41_A 50S ribosomal protein L 35.0 37 0.0013 26.7 3.9 41 279-320 30-72 (101)
103 3qk7_A Transcriptional regulat 34.9 1.6E+02 0.0055 25.9 8.7 87 218-316 7-97 (294)
104 3lft_A Uncharacterized protein 34.9 2.4E+02 0.0081 24.9 11.3 89 218-315 3-91 (295)
105 2fqx_A Membrane lipoprotein TM 34.8 2.3E+02 0.0078 25.8 10.0 88 218-316 5-95 (318)
106 2fn9_A Ribose ABC transporter, 34.1 2.3E+02 0.0079 24.5 11.0 89 218-316 3-92 (290)
107 2i5i_A UPF0249 protein EF_3048 33.5 20 0.00069 33.1 2.5 47 23-75 3-53 (263)
108 2x7x_A Sensor protein; transfe 33.4 2.3E+02 0.008 25.3 9.7 89 218-316 7-96 (325)
109 3v7e_A Ribosome-associated pro 33.3 24 0.00083 26.9 2.5 43 277-319 23-65 (82)
110 3egc_A Putative ribose operon 33.1 1.7E+02 0.0057 25.5 8.5 89 218-318 9-98 (291)
111 3saj_A Glutamate receptor 1; r 33.0 20 0.0007 33.4 2.5 55 256-313 42-97 (384)
112 3om0_A Glutamate receptor, ion 32.8 26 0.00089 32.7 3.2 55 256-312 45-100 (393)
113 1k1e_A Deoxy-D-mannose-octulos 32.6 1.3E+02 0.0043 25.0 7.2 75 67-161 40-115 (180)
114 2f48_A Diphosphate--fructose-6 32.3 24 0.00082 36.6 3.0 55 268-322 153-208 (555)
115 2xzm_U Ribosomal protein L7AE 32.2 61 0.0021 26.9 5.0 44 277-320 36-80 (126)
116 2j13_A Polysaccharide deacetyl 32.1 2.5E+02 0.0085 25.2 9.6 44 40-83 129-175 (247)
117 3cl6_A PUUE allantoinase; URIC 31.8 56 0.0019 30.3 5.3 84 35-119 75-180 (308)
118 3pdu_A 3-hydroxyisobutyrate de 31.2 1.2E+02 0.004 27.4 7.2 91 45-147 16-116 (287)
119 3jyw_G 60S ribosomal protein L 30.9 59 0.002 26.7 4.6 44 276-320 36-81 (113)
120 1vim_A Hypothetical protein AF 30.9 2.5E+02 0.0085 23.9 9.1 23 94-116 87-110 (200)
121 3eaf_A ABC transporter, substr 30.9 39 0.0013 31.3 4.0 59 256-318 51-110 (391)
122 2iks_A DNA-binding transcripti 30.6 2E+02 0.0067 25.1 8.5 88 218-316 21-109 (293)
123 4hwg_A UDP-N-acetylglucosamine 30.5 82 0.0028 30.2 6.3 53 261-316 73-126 (385)
124 3o1i_D Periplasmic protein TOR 30.2 1.7E+02 0.006 25.4 8.1 91 218-317 6-97 (304)
125 2xbl_A Phosphoheptose isomeras 30.0 81 0.0028 26.5 5.6 39 280-318 115-154 (198)
126 3cpq_A 50S ribosomal protein L 29.7 37 0.0013 27.2 3.2 41 279-320 35-77 (110)
127 2fvy_A D-galactose-binding per 29.6 2.8E+02 0.0096 24.1 10.5 90 218-316 3-93 (309)
128 1x92_A APC5045, phosphoheptose 29.6 55 0.0019 27.8 4.4 38 280-317 112-150 (199)
129 2lbw_A H/ACA ribonucleoprotein 29.3 48 0.0016 27.1 3.8 42 279-320 34-76 (121)
130 3v7q_A Probable ribosomal prot 29.1 43 0.0015 26.4 3.4 42 279-320 33-74 (101)
131 3bbl_A Regulatory protein of L 29.1 1.5E+02 0.0053 25.8 7.5 88 218-316 5-96 (287)
132 4a3s_A 6-phosphofructokinase; 29.0 62 0.0021 31.0 5.1 42 269-313 81-122 (319)
133 2y8u_A Chitin deacetylase; hyd 28.7 2.7E+02 0.0091 24.7 9.1 27 57-83 125-151 (230)
134 3hcw_A Maltose operon transcri 28.3 3E+02 0.01 24.1 10.1 89 218-317 8-101 (295)
135 1jdp_A NPR-C, atrial natriuret 28.2 36 0.0012 32.3 3.3 56 256-312 57-113 (441)
136 3kg2_A Glutamate receptor 2; I 28.1 36 0.0012 35.1 3.5 54 256-311 35-88 (823)
137 2h78_A Hibadh, 3-hydroxyisobut 28.1 3.3E+02 0.011 24.4 9.9 91 45-147 18-118 (302)
138 3ij5_A 3-deoxy-D-manno-octulos 28.1 1.7E+02 0.0058 25.5 7.5 68 70-156 84-152 (211)
139 2k6g_A Replication factor C su 28.0 1.6E+02 0.0056 23.6 6.8 86 11-124 9-97 (109)
140 1ny1_A Probable polysaccharide 27.9 2.7E+02 0.0092 24.7 9.0 44 40-83 117-163 (240)
141 3tqv_A Nicotinate-nucleotide p 27.9 1.4E+02 0.0049 28.2 7.4 95 24-125 170-269 (287)
142 1m2k_A Silent information regu 27.5 57 0.0019 29.8 4.4 35 280-316 176-213 (249)
143 3on1_A BH2414 protein; structu 27.3 46 0.0016 26.2 3.2 42 279-320 32-73 (101)
144 1ma3_A SIR2-AF2, transcription 27.2 53 0.0018 30.1 4.1 40 272-315 176-218 (253)
145 3mn1_A Probable YRBI family ph 27.2 2.2E+02 0.0074 23.8 7.9 67 70-155 54-121 (189)
146 2xhz_A KDSD, YRBH, arabinose 5 27.2 73 0.0025 26.5 4.8 39 280-318 95-134 (183)
147 3mq4_A Mglur7, metabotropic gl 27.0 44 0.0015 32.6 3.8 31 282-312 116-146 (481)
148 1rlg_A 50S ribosomal protein L 27.0 52 0.0018 26.7 3.6 44 277-320 39-83 (119)
149 3h5o_A Transcriptional regulat 26.9 2.5E+02 0.0085 25.3 8.7 88 218-317 63-151 (339)
150 3f4w_A Putative hexulose 6 pho 26.8 2.9E+02 0.0099 23.4 9.2 40 109-150 93-133 (211)
151 2yva_A DNAA initiator-associat 26.8 99 0.0034 26.0 5.6 39 280-318 108-147 (196)
152 3u7q_B Nitrogenase molybdenum- 26.7 2.4E+02 0.0083 28.5 9.3 58 26-83 180-253 (523)
153 1yc5_A NAD-dependent deacetyla 26.5 58 0.002 29.6 4.2 40 272-315 173-215 (246)
154 3l6d_A Putative oxidoreductase 25.9 1.8E+02 0.0063 26.6 7.7 94 43-148 22-123 (306)
155 3fwz_A Inner membrane protein 25.8 1.1E+02 0.0037 24.4 5.4 73 97-177 8-83 (140)
156 3k35_A NAD-dependent deacetyla 25.4 85 0.0029 30.2 5.3 41 274-315 200-241 (318)
157 1pea_A Amidase operon; gene re 25.2 71 0.0024 29.5 4.7 96 218-316 8-108 (385)
158 1m3s_A Hypothetical protein YC 25.1 74 0.0025 26.6 4.4 39 280-318 78-117 (186)
159 3sho_A Transcriptional regulat 25.0 82 0.0028 26.2 4.7 39 280-318 86-125 (187)
160 3gnh_A L-lysine, L-arginine ca 24.9 2.5E+02 0.0085 25.7 8.4 90 34-123 161-266 (403)
161 3g0o_A 3-hydroxyisobutyrate de 24.8 3.9E+02 0.013 24.1 10.6 91 44-146 21-122 (303)
162 1vb5_A Translation initiation 24.8 85 0.0029 29.2 5.1 56 95-153 108-169 (276)
163 3pef_A 6-phosphogluconate dehy 24.7 1.9E+02 0.0064 26.0 7.3 91 44-146 15-115 (287)
164 1vq8_F 50S ribosomal protein L 24.6 53 0.0018 26.7 3.3 42 279-320 43-85 (120)
165 1tk9_A Phosphoheptose isomeras 24.6 1.1E+02 0.0037 25.5 5.3 38 280-317 109-147 (188)
166 2fc3_A 50S ribosomal protein L 24.4 54 0.0018 26.8 3.3 42 279-320 42-84 (124)
167 1jeo_A MJ1247, hypothetical pr 24.2 86 0.0029 26.0 4.6 39 280-318 81-120 (180)
168 4hv4_A UDP-N-acetylmuramate--L 24.2 1.1E+02 0.0039 30.3 6.2 61 56-123 47-109 (494)
169 2e4u_A Metabotropic glutamate 24.1 71 0.0024 31.7 4.7 30 282-311 116-145 (555)
170 3iz5_f 60S ribosomal protein L 24.1 81 0.0028 25.6 4.3 45 275-320 36-82 (112)
171 1mio_B Nitrogenase molybdenum 24.0 5.1E+02 0.018 25.3 11.6 118 9-130 118-269 (458)
172 3trj_A Phosphoheptose isomeras 23.9 98 0.0033 26.8 5.1 39 280-318 113-152 (201)
173 1y81_A Conserved hypothetical 23.6 74 0.0025 26.2 4.0 32 102-133 99-130 (138)
174 1pfk_A Phosphofructokinase; tr 23.6 58 0.002 31.3 3.8 42 268-313 81-123 (320)
175 3e61_A Putative transcriptiona 23.4 3.5E+02 0.012 23.1 9.5 86 218-317 9-96 (277)
176 2i2w_A Phosphoheptose isomeras 23.3 96 0.0033 26.8 4.9 39 280-318 130-169 (212)
177 1c9k_A COBU, adenosylcobinamid 23.2 64 0.0022 28.3 3.7 37 285-322 2-38 (180)
178 2hsg_A Glucose-resistance amyl 23.0 3.8E+02 0.013 23.8 9.1 87 218-316 61-148 (332)
179 1xbi_A 50S ribosomal protein L 22.9 59 0.002 26.5 3.2 42 279-320 43-85 (120)
180 1s5p_A NAD-dependent deacetyla 22.9 66 0.0023 29.1 3.9 55 256-315 147-202 (235)
181 1vim_A Hypothetical protein AF 22.9 80 0.0027 27.1 4.3 39 280-318 88-127 (200)
182 2h4a_A YRAM (HI1655); perplasm 22.6 33 0.0011 32.2 1.9 58 254-316 32-90 (325)
183 2bon_A Lipid kinase; DAG kinas 22.6 1.5E+02 0.005 27.8 6.3 17 280-296 81-97 (332)
184 1pjq_A CYSG, siroheme synthase 22.3 3.7E+02 0.013 26.4 9.5 91 18-122 6-100 (457)
185 3doj_A AT3G25530, dehydrogenas 22.3 2.1E+02 0.0073 26.1 7.4 106 24-147 21-136 (310)
186 1zxx_A 6-phosphofructokinase; 22.0 66 0.0022 30.9 3.8 42 268-313 80-122 (319)
187 2fep_A Catabolite control prot 21.9 4E+02 0.014 23.2 11.0 87 218-316 17-104 (289)
188 3ckm_A YRAM (HI1655), LPOA; pe 21.6 39 0.0013 30.8 2.1 53 253-310 33-85 (327)
189 1vpq_A Hypothetical protein TM 21.4 74 0.0025 29.7 4.0 49 60-109 156-209 (273)
190 3u31_A SIR2A, transcriptional 21.2 1.3E+02 0.0045 28.3 5.7 42 272-315 209-251 (290)
191 1z0s_A Probable inorganic poly 21.0 1.4E+02 0.0046 28.1 5.7 66 219-314 31-98 (278)
192 1dbq_A Purine repressor; trans 20.8 4E+02 0.014 22.8 10.5 87 218-316 8-96 (289)
193 1z2w_A Vacuolar protein sortin 20.8 1.2E+02 0.0041 25.6 5.0 83 56-159 42-132 (192)
194 2e67_A Hypothetical protein TT 20.6 60 0.0021 29.9 3.1 22 25-46 13-35 (264)
195 4dpk_A Malonyl-COA/succinyl-CO 20.5 90 0.0031 30.1 4.5 30 100-129 82-113 (359)
196 4dpl_A Malonyl-COA/succinyl-CO 20.5 90 0.0031 30.1 4.5 30 100-129 82-113 (359)
197 2xz9_A Phosphoenolpyruvate-pro 20.3 1.2E+02 0.0039 29.1 5.1 48 35-83 228-275 (324)
198 3eb2_A Putative dihydrodipicol 20.3 3.2E+02 0.011 25.3 8.2 106 226-341 52-166 (300)
199 3gv0_A Transcriptional regulat 20.2 4.3E+02 0.015 22.9 10.3 89 218-317 9-99 (288)
200 3roj_A D-fructose 1,6-bisphosp 20.2 29 0.00099 34.4 0.8 43 66-111 293-335 (379)
201 3sm9_A Mglur3, metabotropic gl 20.1 1.3E+02 0.0044 29.4 5.6 118 218-355 186-315 (479)
202 1nrz_A PTS system, sorbose-spe 20.1 1.4E+02 0.0047 25.9 5.2 80 36-123 59-141 (164)
203 3kjx_A Transcriptional regulat 20.1 4.7E+02 0.016 23.4 9.4 86 218-315 69-155 (344)
204 3o3m_A Alpha subunit 2-hydroxy 20.1 1E+02 0.0034 30.1 4.8 52 33-84 221-288 (408)
No 1
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=100.00 E-value=6.2e-91 Score=671.57 Aligned_cols=258 Identities=29% Similarity=0.481 Sum_probs=243.1
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEc
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP 103 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIr 103 (361)
.|+|++|+++||||||+|||++|+++++++ ++|||++|||||||+|+++|+++|+.++++ +++|+|++||||
T Consensus 1 ~m~I~lA~~~GFC~GV~RAI~~a~~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIir 72 (297)
T 3dnf_A 1 MVDIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIR 72 (297)
T ss_dssp CCEEEECTTCSSCHHHHHHHHHHHHHTTTC-CSCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEEC
T ss_pred CeEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEE
Confidence 499999999999999999999999999876 479999999999999999999999999974 678889999999
Q ss_pred CCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC---C-cEEEEcChhhhHh
Q 018062 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA---G-KYIIVKNMKEAEY 179 (361)
Q Consensus 104 AHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a---~-~~ivv~~~~e~~~ 179 (361)
|||+||+++++|+++|++|||||||||+|+|+.|++++++||+|||+|+++||||+|+.||+ + +++||++++|++.
T Consensus 73 AHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~ 152 (297)
T 3dnf_A 73 SHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGE 152 (297)
T ss_dssp TTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGG
T ss_pred CCCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 4 6899999999987
Q ss_pred hhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccc
Q 018062 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS 259 (361)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v 259 (361)
+. ..+|+++++|||||.++|.+|+++|+++|| ++.+
T Consensus 153 l~----------------------------------~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p----------~~~~ 188 (297)
T 3dnf_A 153 AL----------------------------------KHERVGIVAQTTQNEEFFKEVVGEIALWVK----------EVKV 188 (297)
T ss_dssp GG----------------------------------GCSEEEEEECTTCCHHHHHHHHHHHHHHSS----------EEEE
T ss_pred cC----------------------------------CCCcEEEEEecCCcHHHHHHHHHHHHHhCC----------CCCC
Confidence 51 126999999999999999999999987432 4678
Q ss_pred cccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEee
Q 018062 260 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFT 339 (361)
Q Consensus 260 ~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~ 339 (361)
+||||+||++||+|+++|| +++|+||||||+|||||+||+|+|++.|+++||||+++||+++ ||.+.+.+|||
T Consensus 189 ~~tIC~AT~~RQ~av~~la-~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~------wl~~~~~VGIT 261 (297)
T 3dnf_A 189 INTICNATSLRQESVKKLA-PEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQPE------WFRGVKRVGIS 261 (297)
T ss_dssp ECCCCSHHHHHHHHHHHHG-GGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCGG------GGTTCSEEEEE
T ss_pred CCCccHHHHHHHHHHHHHH-hhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCHH------HhCCCCEEEEe
Confidence 9999999999999999998 7899999999999999999999999999999999999999999 99999999999
Q ss_pred e
Q 018062 340 C 340 (361)
Q Consensus 340 ~ 340 (361)
+
T Consensus 262 A 262 (297)
T 3dnf_A 262 A 262 (297)
T ss_dssp E
T ss_pred e
Confidence 8
No 2
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=100.00 E-value=7.8e-91 Score=678.21 Aligned_cols=265 Identities=27% Similarity=0.415 Sum_probs=244.6
Q ss_pred ccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEE
Q 018062 22 WGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV 101 (361)
Q Consensus 22 ~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VI 101 (361)
-|.|.|++|+++||||||+|||++|+++++++ ++|||++|||||||+|+++|+++|+.+++ +++++|+|++||
T Consensus 10 ~~~~~i~lA~~~GFC~GV~RAI~~ae~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve------~l~ev~~g~~VI 82 (328)
T 3szu_A 10 HGSMQILLANPRGFCAGVDRAISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGAIFIE------QISEVPDGAILI 82 (328)
T ss_dssp ---CEEEECSSCSCCHHHHHHHHHHHHHHHHH-CSCEEEESCSSSCHHHHHHHHHTTEEEES------SGGGSCTTCEEE
T ss_pred CCceEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCccCHHHHHHHHHCCCEEec------chhhCCCCCEEE
Confidence 47899999999999999999999999999876 45899999999999999999999999997 478999999999
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC--C--cEEEEcChhhh
Q 018062 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--G--KYIIVKNMKEA 177 (361)
Q Consensus 102 IrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a--~--~~ivv~~~~e~ 177 (361)
|||||+||+++++|+++|++|||||||||+|+|+.|++++++||+|||+|+++||||+|++||+ + ++++|++++|+
T Consensus 83 irAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~edv 162 (328)
T 3szu_A 83 FSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDV 162 (328)
T ss_dssp ECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHHH
T ss_pred EECCCCCHHHHHHHHHCCCEEEECCCcchHHHHHHHHHHHhCCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 4 58999999999
Q ss_pred HhhhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccc
Q 018062 178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHF 257 (361)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~ 257 (361)
+.+. + .+++|+++++|||||.++|.+|+++|+++|+....
T Consensus 163 ~~l~-------------------------------~-~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~~-------- 202 (328)
T 3szu_A 163 WKLT-------------------------------V-KNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVG-------- 202 (328)
T ss_dssp HHCC-------------------------------C-SCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCBC--------
T ss_pred HhCC-------------------------------c-CCCCeEEEEEecCCcHHHHHHHHHHHHHhCccccc--------
Confidence 8751 1 13369999999999999999999999987655432
Q ss_pred cccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEE
Q 018062 258 ISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILN 337 (361)
Q Consensus 258 ~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~ 337 (361)
..+||||+||++||+|+++|| +++|+||||||+|||||+||+|+|++.|++|||||+++||+++ ||.+.+.+|
T Consensus 203 ~~~ntIC~AT~~RQ~av~~lA-~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~~~------wl~g~~~VG 275 (328)
T 3szu_A 203 PRKDDICYATTNRQEAVRALA-EQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEE------WVKEVKCVG 275 (328)
T ss_dssp CSSCSCCHHHHHHHHHHHHHH-HHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCCHH------HHTTCSEEE
T ss_pred CCCCCcCHHHHHHHHHHHHHH-HhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCCHH------HhCCCCEEE
Confidence 248999999999999999998 6899999999999999999999999999999999999999998 999999999
Q ss_pred eee
Q 018062 338 FTC 340 (361)
Q Consensus 338 ~~~ 340 (361)
||+
T Consensus 276 ITA 278 (328)
T 3szu_A 276 VTA 278 (328)
T ss_dssp EEE
T ss_pred Eee
Confidence 998
No 3
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=95.45 E-value=0.25 Score=47.67 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=127.0
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCCE-EEEcCCCCC
Q 018062 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDV-VVLPAFGAA 108 (361)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~-----GV~~v~~~~~~~~l~el~~g~~-VIIrAHGv~ 108 (361)
=|.=|.++-+.+++..++ +..|.+.|.==| |+|..-+-.- ++.+|++.++. +.++..+. .++.=--.+
T Consensus 95 TCP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~g~~~~~~~~~~vV~~~ed~---~~l~~~~kv~~vsQTT~s 168 (297)
T 3dnf_A 95 TCPYVKAVHEAVCQLTRE--GYFVVLVGEKNH-PEVIGTLGYLRACNGKGIVVETLEDI---GEALKHERVGIVAQTTQN 168 (297)
T ss_dssp CCHHHHHHHHHHHHHHHT--TCEEEEESCTTC-HHHHHHHHHHHHTTCCEEEESSGGGG---GGGGGCSEEEEEECTTCC
T ss_pred CCcchHHHHHHHHHHHhC--CCEEEEEecCCC-ceEEeeccccccCCCcEEEEcCHHHH---HhcCCCCcEEEEEecCCc
Confidence 377788888888887775 468999999888 8888876443 57777765433 33333333 455555555
Q ss_pred H----HHHHHHHhcC--CcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhhH
Q 018062 109 V----EEMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (361)
Q Consensus 109 ~----~v~~~l~~kg--l~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a----~~~ivv~~~~e~~ 178 (361)
. ++.+.|+++. +.+.|+-|.-...=|..+++++++-.-+|++|.+|-.-+.=+...| .+++.|++.+|+.
T Consensus 169 ~~~~~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~ 248 (297)
T 3dnf_A 169 EEFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQ 248 (297)
T ss_dssp HHHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCC
Confidence 4 4456777764 5568999999999999999999999999999999988776665544 4689999999875
Q ss_pred hhhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 018062 179 YVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (361)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~ 242 (361)
.- + | + ..+.+|+.+=+.-+..-.++++++|++
T Consensus 249 ~~------------------w---l--------~---~~~~VGITAGASTP~~li~eVi~~l~~ 280 (297)
T 3dnf_A 249 PE------------------W---F--------R---GVKRVGISAGASTPDWIIEQVKSRIQE 280 (297)
T ss_dssp GG------------------G---G--------T---TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HH------------------H---h--------C---CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 31 0 1 1 225899999999999999999999876
No 4
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=95.14 E-value=0.28 Score=47.98 Aligned_cols=172 Identities=13% Similarity=0.178 Sum_probs=127.1
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCCEEEEcCCCCCH-
Q 018062 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV- 109 (361)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~-----GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~- 109 (361)
|.=|.++-+.+++..++ +..|.+.|.==| |+|..-+-.- ++.+|++.++.+.++.-.+....++.=--.+.
T Consensus 108 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~G~~~~~~g~~~vV~~~edv~~l~~~~~~kv~~vsQTT~s~~ 184 (328)
T 3szu_A 108 CPLVTKVHMEVARASRR--GEESILIGHAGH-PQVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVD 184 (328)
T ss_dssp CHHHHHHHHHHHHHHHH--TCEEEEESCTTC-HHHHHHHTTCCCTTSCEEEECSHHHHHHCCCSCTTSEEEEECTTSCHH
T ss_pred CcchHHHHHHHHHHHhC--CCEEEEEccCCC-ceEEeecccccCCCCcEEEECCHHHHHhCCcCCCCeEEEEEecCCcHH
Confidence 77788877888877775 468999999888 8888877543 46677764333233211112345666555554
Q ss_pred ---HHHHHHHhcCCcE----EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhhH
Q 018062 110 ---EEMVTLNNKNVQI----VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (361)
Q Consensus 110 ---~v~~~l~~kgl~V----iDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a----~~~ivv~~~~e~~ 178 (361)
++.+.|+++.-.+ .|+-|.-...=|..+++++++-.-+|++|.+|-.-+.=+...| ..++.|++.+|+.
T Consensus 185 ~~~~iv~~L~~r~p~i~~~~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~ 264 (328)
T 3szu_A 185 DTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 264 (328)
T ss_dssp HHHHHHHHHHHHCTTCBCCSSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCC
T ss_pred HHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCC
Confidence 4567788877665 4999999999999999999999999999999987776665444 3689999999875
Q ss_pred hhhccccCCCCCCCCCcHHHHHHHHHhhhcCCCCCCCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 018062 179 YVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (361)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~s~~~~~~I~~~l~~ 242 (361)
. ++ |+ ..+.||+.+=+.-+..-.++++++|++
T Consensus 265 ~------------------~w---l~-----------g~~~VGITAGASTP~~lieeVi~~l~~ 296 (328)
T 3szu_A 265 E------------------EW---VK-----------EVKCVGVTAGASAPDILVQNVVARLQQ 296 (328)
T ss_dssp H------------------HH---HT-----------TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred H------------------HH---hC-----------CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 2 11 21 125899999999999999999999987
No 5
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=80.60 E-value=4.6 Score=35.63 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCCEE-EEcCCCCCHHHH
Q 018062 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVV-VLPAFGAAVEEM 112 (361)
Q Consensus 39 V~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~-----GV~~v~~~~~~~~l~el~~g~~V-IIrAHGv~~~v~ 112 (361)
+++|.++.-+++.. ++.||++|- =|-.-+.+..--+ |+.-+. ...++.++|+| ||+..|..+...
T Consensus 24 I~~AA~llaqai~~--~g~IyvfG~-Ghs~~~~~e~~~~~e~l~~~~~~~------~~~~i~~~D~vii~S~Sg~n~~~i 94 (170)
T 3jx9_A 24 LFDVVRLLAQALVG--QGKVYLDAY-GEFEGLYPMLSDGPDQMKRVTKIK------DHKTLHAVDRVLIFTPDTERSDLL 94 (170)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEEC-GGGGGGTHHHHTSTTCCTTEEECC------TTCCCCTTCEEEEEESCSCCHHHH
T ss_pred HHHHHHHHHHHHhC--CCEEEEECC-CcHHHHHHHHHcccCCccchhhhh------hcCCCCCCCEEEEEeCCCCCHHHH
Confidence 45666666666653 568999983 4544444333221 122221 12366778875 799999998765
Q ss_pred HHH
Q 018062 113 VTL 115 (361)
Q Consensus 113 ~~l 115 (361)
+.|
T Consensus 95 e~A 97 (170)
T 3jx9_A 95 ASL 97 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 6
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=80.01 E-value=28 Score=31.89 Aligned_cols=117 Identities=11% Similarity=0.006 Sum_probs=69.0
Q ss_pred chhHHHHHHHcCCccccc-ceEEEEeC--------------CCCCcccHHHHHHHHHHHHhhC--------CCCceEEec
Q 018062 6 TSDIIKKLKENGFEYTWG-NVKVKLAE--------------SYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (361)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~mkI~lA~--------------~~GFC~GV~RAI~~a~~~~~~~--------~~~~Vy~lG 62 (361)
.+.+.++|++.|+....- .+++.-.. ..+.-|==.+||+...+.+.+. .+.++|+.|
T Consensus 44 ~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG 123 (286)
T 3d8t_A 44 KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 123 (286)
T ss_dssp HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhccCCCEEEEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEEC
Confidence 578889999998655443 34443211 1122222244444443333211 124799998
Q ss_pred ccccCHHHHHHHHHcCcEE--ecCCccccccccccCCC-E-EEEcCCCCCHHHHHHHHhcCCcEEeCcC
Q 018062 63 EIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD-V-VVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (361)
Q Consensus 63 ~iIHN~~Vv~~L~~~GV~~--v~~~~~~~~l~el~~g~-~-VIIrAHGv~~~v~~~l~~kgl~ViDATC 127 (361)
+ ..-+.|++.|+.. +.+.+...-++.+.+|. . ++.|+-+-.+...+.|+++|..|....|
T Consensus 124 ~-----~Ta~aL~~~G~~~~~~p~~~~e~L~~~l~~g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~ 187 (286)
T 3d8t_A 124 A-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 187 (286)
T ss_dssp H-----HHHHHHHHTTCCCSEECSSSGGGGGGGCCCCCSEEEEECSSSCCHHHHHHHHHTTCEEEEECS
T ss_pred H-----HHHHHHHHcCCCccccccccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEEE
Confidence 5 5568999999863 32111112233344465 4 5678888889999999999999866554
No 7
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=78.37 E-value=33 Score=33.81 Aligned_cols=114 Identities=13% Similarity=0.166 Sum_probs=67.6
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhC-------------------------------------CCCceEEeccccc
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQF-------------------------------------PEEKIWITNEIIH 66 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~-------------------------------------~~~~Vy~lG~iIH 66 (361)
+..|+.+...||..+...+.+.|.+++-++ ..+.|-.+|.+
T Consensus 128 ~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnilG~~-- 205 (460)
T 2xdq_A 128 GIPIVVARANGLDYAFTQGEDTVLAAMAARCPTSTAISDPEERNPIQRLLNFGKKKEEVQAQSSQYHPHPPLVLFGSL-- 205 (460)
T ss_dssp SSCEEEEECCTTTCCTTHHHHHHHHHHHTTCCCCC-----------------------------CCCSCCCEEEESCC--
T ss_pred CCcEEEEecCCccccHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccCCCCcEEEEEec--
Confidence 357888999999866666655555443221 11268899987
Q ss_pred CHHH----HHHHHHcCcEEecC--CccccccccccCCCEEEEcCCCCCHHHHHHH-HhcCCcEEeCcChhh-HHHHHHHH
Q 018062 67 NPTV----NKRLEEMAVQNIPV--EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL-NNKNVQIVDTTCPWV-SKVWTSVE 138 (361)
Q Consensus 67 N~~V----v~~L~~~GV~~v~~--~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l-~~kgl~ViDATCP~V-~kv~~~v~ 138 (361)
|+.. ..-|++.|+.++.= ....+++..++.....+.-.+-.. ..-+.| ++.|...+..+.|+- ..+-+-.+
T Consensus 206 ~~~~~~ei~~lL~~~Gi~v~~~~~~~~~~el~~~~~A~~ni~~~~~~~-~~A~~Le~~~giP~~~~~~P~G~~~T~~~Lr 284 (460)
T 2xdq_A 206 PDPVVTQLTLELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFLS-RTATTLIRRRKCQLITAPFPIGPDGTRTWIE 284 (460)
T ss_dssp CHHHHHHHHHHHGGGTCCEEEEESCSSGGGCCCCCTTCEEEESSTTCH-HHHHHHHHTTCCEEECCCCSBHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHcCCeEEEEeCCCCHHHHHccccCcEEEEcCHhHH-HHHHHHHHHcCCCceecCcCccHHHHHHHHH
Confidence 7763 55678999987641 112234444444443343333333 555556 667889998888985 33443344
Q ss_pred HH
Q 018062 139 KH 140 (361)
Q Consensus 139 ~~ 140 (361)
++
T Consensus 285 ~i 286 (460)
T 2xdq_A 285 QI 286 (460)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 8
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=77.81 E-value=22 Score=31.71 Aligned_cols=117 Identities=11% Similarity=-0.003 Sum_probs=68.5
Q ss_pred chhHHHHHHHcCCccccc-ceEEEEe--------------CCCCCcccHHHHHHHHHHHHhhC--------CCCceEEec
Q 018062 6 TSDIIKKLKENGFEYTWG-NVKVKLA--------------ESYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (361)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~mkI~lA--------------~~~GFC~GV~RAI~~a~~~~~~~--------~~~~Vy~lG 62 (361)
.+.+.++|++.|+....- .+++.-. ...+.-|==.+||+...+.+.+. .+.++|+.|
T Consensus 19 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG 98 (261)
T 1wcw_A 19 KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 98 (261)
T ss_dssp HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHhCchHHHHhcCCeEEEEC
Confidence 577889999998654443 3444321 11222232344555444433221 124799998
Q ss_pred ccccCHHHHHHHHHcCcEE--ecCCccccccccccCCC-E-EEEcCCCCCHHHHHHHHhcCCcEEeCcC
Q 018062 63 EIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD-V-VVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (361)
Q Consensus 63 ~iIHN~~Vv~~L~~~GV~~--v~~~~~~~~l~el~~g~-~-VIIrAHGv~~~v~~~l~~kgl~ViDATC 127 (361)
+ ..-+.|++.|+.. +.+.+...-++.+.+|. . ++.|+-+-.+...+.|+++|..|....|
T Consensus 99 ~-----~Ta~~l~~~G~~~~~~p~~~~e~L~~~l~~g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~ 162 (261)
T 1wcw_A 99 A-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 162 (261)
T ss_dssp H-----HHHHHHHHTTCCCSEECSSSHHHHGGGSCCCCEEEEEECCSSCCHHHHHHHHHTTEEEEEECS
T ss_pred H-----HHHHHHHHcCCCCCcccCccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEee
Confidence 5 4558899999863 32111111223333365 4 5678888889999999999998865544
No 9
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=76.13 E-value=2.3 Score=36.19 Aligned_cols=76 Identities=24% Similarity=0.475 Sum_probs=50.2
Q ss_pred CCcccchhHHHHHHH-cCCcccccceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC
Q 018062 1 MNQEYTSDIIKKLKE-NGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~mkI~lA~~~GF-C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~G 78 (361)
|+.+-+++|++..++ .|.|+.||+. .+.|| |.|--+ .+++.. . + |--|.......+.|
T Consensus 1 mn~~~~~~ii~~a~~~lG~PY~wGG~-----~~~G~DCSGlv~---~vy~~~--~-G---------i~lPr~s~~q~~~g 60 (135)
T 2k1g_A 1 MNVDVKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSGFVQ---RTFREQ--F-G---------LELPRSTYEQQEMG 60 (135)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCSSCC-----BTTBCCHHHHHH---HHHHHT--T-C---------CCCCSSHHHHGGGS
T ss_pred CCHhHHHHHHHHHHHHCCCCccCCCc-----CCCCceeHHHHH---HHHHHc--C-C---------CCCCCCHHHHhhCC
Confidence 677888999988776 4999999984 57898 999644 333221 1 1 22244455566666
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 018062 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (361)
Q Consensus 79 V~~v~~~~~~~~l~el~~g~~VIIrA 104 (361)
-. |+ .+++.+||.|.++.
T Consensus 61 ~~-V~-------~~~l~pGDLvFf~~ 78 (135)
T 2k1g_A 61 KS-VS-------RSNLRTGDLVLFRA 78 (135)
T ss_dssp EE-EC-------GGGCCTTEEEEEEE
T ss_pred cE-ec-------HHHccCCcEEEECC
Confidence 44 32 46777899888874
No 10
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=71.80 E-value=2.2 Score=41.79 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=43.0
Q ss_pred CCCCcccHHHHHHHHHHHHhh---CC-----CCceEEecccccCHHHHHHHHHcCcEEecC
Q 018062 32 SYGFCWGVERAVQIAYEARKQ---FP-----EEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (361)
Q Consensus 32 ~~GFC~GV~RAI~~a~~~~~~---~~-----~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~ 84 (361)
..+||+|.+++.++.++++++ .+ +.+|...|-...|+.+.+.|++.|+.+|-+
T Consensus 198 ~~~~~~~~~~~~~~~~~l~~el~~~~~~~~~~~RI~~~G~~~~~~~l~~~le~~Ga~VV~~ 258 (385)
T 3o3m_B 198 KSGFFMRKEEHTELVKDLIAKLNAMPEEVCSGKKVLLTGILADSKDILDILEDNNISVVAD 258 (385)
T ss_dssp HGGGGSCHHHHHHHHHHHHHHHHHSCCCCCSSEEEEEEESCCCCHHHHHHHHHTTEEEEEE
T ss_pred HhheeCCHHHHHHHHHHHHHHHHhhhhcCCCCceEEEECCCCCcHHHHHHHHHCCCEEEEE
Confidence 357999999999988775432 11 237999999999999999999999999864
No 11
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=70.77 E-value=17 Score=31.49 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=34.2
Q ss_pred Ccccccc-eEEEEeC-CCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC--cEEecC
Q 018062 18 FEYTWGN-VKVKLAE-SYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPV 84 (361)
Q Consensus 18 ~~~~~~~-mkI~lA~-~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~G--V~~v~~ 84 (361)
.+..+.+ |+|.+.+ .-|- ..+++.+.+.+++.....|+.+|+++. |.+++.|++.+ +.+|.+
T Consensus 18 ~~~~~~g~m~i~~iSD~Hg~----~~~l~~~l~~~~~~~~D~ii~~GDl~~-~~~~~~l~~l~~~~~~V~G 83 (190)
T 1s3l_A 18 ENLYFQGHMKIGIMSDTHDH----LPNIRKAIEIFNDENVETVIHCGDFVS-LFVIKEFENLNANIIATYG 83 (190)
T ss_dssp --------CEEEEECCCTTC----HHHHHHHHHHHHHSCCSEEEECSCCCS-THHHHHGGGCSSEEEEECC
T ss_pred cChhhcCCeEEEEEeeCCCC----HHHHHHHHHHHhhcCCCEEEECCCCCC-HHHHHHHHhcCCCEEEEeC
Confidence 4556665 8887653 3342 345555544443322246999999985 67899998654 455554
No 12
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=68.79 E-value=19 Score=32.80 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=57.3
Q ss_pred eEEEEEcCC-CChHHHHHHHHHHHHHHhhhcCc--ccccccccccccccHHHHHHHHHHHHchh-cCCcEEEEEcCCCCc
Q 018062 219 KVGIANQTT-MLKGETEEIGKLVEKTMMRKFGV--ENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSS 294 (361)
Q Consensus 219 kv~vvsQTT-~s~~~~~~I~~~l~~~~~~~~~~--~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~-~~vD~miVIGGknSS 294 (361)
+|+++.-.| -...-...+..-++..+.+. .. ....-++.+.|+-|......+ ++++|.. ..||+ |||...|+
T Consensus 8 ~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~-~~~i~G~~i~l~~~D~~~~~~~~~~-~~~~li~~~~v~~--iiG~~~s~ 83 (368)
T 4eyg_A 8 KVGLIVPMTGGQASTGKQIDNAIKLYIKKH-GDTVAGKKIEVILKDDAAIPDNTKR-LAQELIVNDKVNV--IAGFGITP 83 (368)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHH-CSEETTEEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EEECSSHH
T ss_pred EEEEEeCCcCcchhccHHHHHHHHHHHHHc-CCCCCCeEEEEEEeCCCCCHHHHHH-HHHHHHhcCCcEE--EECCCccH
Confidence 788776544 33333444554444332221 11 001125678898887765544 4466653 56776 45888899
Q ss_pred hhHHHHHHHHhcCCCeEEeCC
Q 018062 295 NTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~ 315 (361)
.+..+.+++.+.+.|......
T Consensus 84 ~~~~~~~~~~~~~ip~i~~~~ 104 (368)
T 4eyg_A 84 AALAAAPLATQAKVPEIVMAA 104 (368)
T ss_dssp HHHHHHHHHHHHTCCEEESSC
T ss_pred HHHHHHHHHHhCCceEEeccC
Confidence 999999999999998876654
No 13
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=68.76 E-value=35 Score=33.69 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=63.3
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhh----CCCCceEEecccccCH--HHHHHHHHcCcEEecCCcccccccccc--
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQ----FPEEKIWITNEIIHNP--TVNKRLEEMAVQNIPVEEGKKQFDVVN-- 95 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~----~~~~~Vy~lG~iIHN~--~Vv~~L~~~GV~~v~~~~~~~~l~el~-- 95 (361)
+..|+-+..-||-..-....+.|.+++-+ .+...|-.+|++--+. ++..-|++.|++++.-.++. .++++.
T Consensus 148 ~~pVi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~ 226 (437)
T 3aek_A 148 HVRVYSYTGSGLDTTFTQGEDTCLAAMVPTLDTTEAAELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAV 226 (437)
T ss_dssp TCEEEEEECCTTTCCTTHHHHHHHHHHGGGSCBCCCCCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCB
T ss_pred CCeEEEeECCCCCCcHHHHHHHHHHHHHHHhcccCCCcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhh
Confidence 46788888888864334444444444332 1235799999974442 55666799999876433322 445554
Q ss_pred -CCC-EEEEcCCCCCHHHHHHHHhcCCcEEeCcChhh
Q 018062 96 -KGD-VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 130 (361)
Q Consensus 96 -~g~-~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V 130 (361)
+.. ++++...+ ...-+.|++.|...+..+.|+-
T Consensus 227 ~~A~~niv~~~~~--~~~A~~Le~~GiP~i~~~~P~G 261 (437)
T 3aek_A 227 GPNTRFILAQPFL--GETTGALERRGAKRIAAPFPFG 261 (437)
T ss_dssp CTTCEEEESSTTC--HHHHHHHHHTTCEECCCCCSCH
T ss_pred hcCcEEEEECccH--HHHHHHHHHcCCCeEecCCCcC
Confidence 332 34454433 4455555888999999988873
No 14
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=67.71 E-value=31 Score=31.52 Aligned_cols=91 Identities=10% Similarity=0.172 Sum_probs=58.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchh--cCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVE--EKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~--~~vD~miVIGGknSS 294 (361)
.+|+++.-...+-.-|..+.+-+++...+. + -++.+.++ .....+| +.++.+.+ +.+|.+|+++ .++
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~~i~~~~~vDgiIi~~--~~~ 73 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDL-G-----LDLRILYA--ERDPQNTLQQARELFQGRDKPDYLMLVN--EQY 73 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHSSSCCSEEEEEC--CSS
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHc-C-----CeEEEEEC--CCCHHHHHHHHHHHHhcCCCCCEEEEeC--chh
Confidence 479998877655466788887777654332 2 12333332 2233444 34555654 3899999986 334
Q ss_pred hhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 295 NTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
.+..+++.+.+.|.|...+.+..+
T Consensus 74 ~~~~~~~~~~~~giPvV~~~~~~~ 97 (350)
T 3h75_A 74 VAPQILRLSQGSGIKLFIVNSPLT 97 (350)
T ss_dssp HHHHHHHHHTTSCCEEEEEESCCC
T ss_pred hHHHHHHHHHhCCCcEEEEcCCCC
Confidence 556777888888999999987644
No 15
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=63.19 E-value=49 Score=28.51 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=53.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcC-CcEEEEEcCCCCchh
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEK-VDLILVVGGWNSSNT 296 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~-vD~miVIGGknSSNT 296 (361)
+|+++.-.. +..-|..+.+-+++...+. + -++.+.++-.....++| +.++.|.+.. +|.+|+.+. .+..+
T Consensus 2 ~Ig~i~~~~-~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~-~~~~~ 73 (276)
T 3ksm_A 2 KLLLVLKGD-SNAYWRQVYLGAQKAADEA-G-----VTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN-SAEDL 73 (276)
T ss_dssp EEEEECSCS-SSTHHHHHHHHHHHHHHHH-T-----CEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS-STTTT
T ss_pred eEEEEeCCC-CChHHHHHHHHHHHHHHHc-C-----CEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC-CHHHH
Confidence 567776543 3345667777666543332 2 23333332222344455 4555665567 999998775 33445
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
....+.+.+.+.|...+.+..
T Consensus 74 ~~~~~~~~~~~ipvV~~~~~~ 94 (276)
T 3ksm_A 74 TPSVAQYRARNIPVLVVDSDL 94 (276)
T ss_dssp HHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHCCCcEEEEecCC
Confidence 566667778899999998654
No 16
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=62.82 E-value=44 Score=29.52 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=54.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhH
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~ 297 (361)
+|+++..+ ++-.-|..+.+-+++...+. + -++.+.++ + ..++| +.++.|.+..+|.+|+.+.. ++...
T Consensus 4 ~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~-~~~~~~~~i~~l~~~~vdgiii~~~~-~~~~~ 72 (306)
T 8abp_A 4 KLGFLVKQ-PEEPWFQTEWKFADKAGKDL-G-----FEVIKIAV--P-DGEKTLNAIDSLAASGAKGFVICTPD-PKLGS 72 (306)
T ss_dssp EEEEEESC-TTSHHHHHHHHHHHHHHHHH-T-----EEEEEEEC--C-SHHHHHHHHHHHHHTTCCEEEEECSC-GGGHH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHHc-C-----CEEEEeCC--C-CHHHHHHHHHHHHHcCCCEEEEeCCC-chhhH
Confidence 68888764 44556777777776643332 2 23444444 2 33344 44555555789999988753 33455
Q ss_pred HHHHHHHhcCCCeEEeCC
Q 018062 298 HLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 298 kL~eia~~~~~~t~~Ie~ 315 (361)
.+.+.+.+.+.|...+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 73 AIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHCCCcEEEeCC
Confidence 666677788999999985
No 17
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=62.79 E-value=29 Score=29.44 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=17.2
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHHH
Q 018062 94 VNKGDV-VVLPAFGAAVEEMVTLN 116 (361)
Q Consensus 94 l~~g~~-VIIrAHGv~~~v~~~l~ 116 (361)
+.++|. ++|+.-|-++++.+.++
T Consensus 107 ~~~~DvvI~iS~SG~t~~~i~~~~ 130 (196)
T 2yva_A 107 GHAGDVLLAISTRGNSRDIVKAVE 130 (196)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHH
Confidence 456776 46899999999876553
No 18
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=61.14 E-value=15 Score=32.71 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=45.4
Q ss_pred CCceEEecccccCHHHHHHHHHcCcEEecCCcc--cccc-c----cccCCCEEEEcCCCCCHHHHHHHHhcCCcE-----
Q 018062 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG--KKQF-D----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQI----- 122 (361)
Q Consensus 55 ~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~--~~~l-~----el~~g~~VIIrAHGv~~~v~~~l~~kgl~V----- 122 (361)
+.++|+.|+ ..-+.|++.|+..+--.+. .+.+ + .++....+++|+-+-.+...+.|+++|..|
T Consensus 67 ~~~i~aVG~-----~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 141 (229)
T 3p9z_A 67 NIPAYALSE-----PTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVV 141 (229)
T ss_dssp TSCEEESSH-----HHHHHHHHTTCCBCCCCC---------CCHHHHTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEE
T ss_pred CCcEEEECH-----HHHHHHHHcCCCeeecCCcccHHHHHHHHHhhCCCCEEEEECCccchHHHHHHHHHCCCeEEEEEE
Confidence 458999995 5568999999975422111 1111 1 223234578999999999999999999887
Q ss_pred EeCcCh
Q 018062 123 VDTTCP 128 (361)
Q Consensus 123 iDATCP 128 (361)
+++.||
T Consensus 142 Y~~~~~ 147 (229)
T 3p9z_A 142 YENKLK 147 (229)
T ss_dssp EEEEEC
T ss_pred EEeeCC
Confidence 555554
No 19
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=60.31 E-value=35 Score=30.91 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=42.3
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
++.+.||-|.....++ ++++|....||+ |||...|+.+..+.+++.+.+.|.....+
T Consensus 45 ~l~~~d~~~~~~~~~~-~~~~l~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~ 101 (356)
T 3ipc_A 45 KIVLGDDVSDPKQGIS-VANKFVADGVKF--VVGHANSGVSIPASEVYAENGILEITPAA 101 (356)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTTCCE--EEECSSHHHHHHHHHHHHTTTCEEEESSC
T ss_pred EEEEecCCCCHHHHHH-HHHHHHHCCCcE--EEcCCCcHHHHHHHHHHHhCCCeEEecCC
Confidence 4667888887765544 445554467877 78889999999999999999888766443
No 20
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=59.41 E-value=74 Score=31.02 Aligned_cols=118 Identities=12% Similarity=0.105 Sum_probs=66.6
Q ss_pred chhHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCC---CCceEEecccccCHHHHHHHHHcCcEEe
Q 018062 6 TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFP---EEKIWITNEIIHNPTVNKRLEEMAVQNI 82 (361)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~---~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v 82 (361)
..+.+++|++.|..- .-++-.-|.-=|..+.-+++.+.++..+.. .-++-+.-..=-+|.-++.|.+.=-..+
T Consensus 106 i~~~l~~l~~~G~~~----ivvlPlyPqyS~~Ttgs~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l 181 (359)
T 3hcn_A 106 TEEAIEEMERDGLER----AIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKEL 181 (359)
T ss_dssp HHHHHHHHHHTTCSE----EEEEESCSSCCTTTHHHHHHHHHHHHHHTTCCCSSEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCe----EEEEECCccccccchhhHHHHHHHHHHHhccCCCCceEEeCCccCCHHHHHHHHHHHHHHH
Confidence 345556666655431 111112222224456666777666655421 1135667777777888887766522222
Q ss_pred cCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhC
Q 018062 83 PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (361)
Q Consensus 83 ~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~ 143 (361)
+..+ .+..+...++|+|||+|....+ +| -||...+++.++.+.++
T Consensus 182 ~~~~-----~~~~~~~~LlfSaHgiP~~~~~----~G-------DpY~~q~~~t~~lv~e~ 226 (359)
T 3hcn_A 182 DHFP-----LEKRSEVVILFSAHSLPMSVVN----RG-------DPYPQEVSATVQKVMER 226 (359)
T ss_dssp TTSC-----TTTGGGCEEEEEEECCBHHHHT----TT-------CSHHHHHHHHHHHHHHH
T ss_pred HhCC-----ccccCCcEEEEEcCCChHhhcc----cC-------CCHHHHHHHHHHHHHHH
Confidence 2100 0111234799999999998753 45 48988888888877664
No 21
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=58.98 E-value=45 Score=29.09 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=17.6
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHHH
Q 018062 94 VNKGDVV-VLPAFGAAVEEMVTLN 116 (361)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~~~l~ 116 (361)
+.++|.| +|+.-|-++++.+.++
T Consensus 112 ~~~~Dvvi~iS~SG~t~~~~~~~~ 135 (201)
T 3trj_A 112 GNEDDILLVITTSGDSENILSAVE 135 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHH
Confidence 4567865 5889999999987664
No 22
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=58.81 E-value=50 Score=30.48 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=43.1
Q ss_pred ccccccccccHHHHHHHHHHHHchh-cCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCC
Q 018062 255 EHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~-~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
-++.+.||-|......+ ++++|.. ..||+ |||...|+.+..+.++|.+.+.|.+....
T Consensus 47 i~l~~~D~~~~~~~~~~-~~~~li~~~~v~a--iiG~~~s~~~~a~~~~~~~~~ip~i~~~~ 105 (387)
T 3i45_A 47 LEVISRDDGGDPGKAVT-AAQELLTRHGVHA--LAGTFLSHVGLAVSDFARQRKVLFMASEP 105 (387)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHHHHHHCCSE--EEECCSHHHHHHHHHHHHHHTCCEEECSC
T ss_pred eEEEEecCCCCHHHHHH-HHHHHHHhcCCEE--EECCcchHHHHHHHHHHHHcCceEEecCC
Confidence 35667888887766544 4455543 36886 68999999999999999999988776543
No 23
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=58.61 E-value=22 Score=33.65 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=52.3
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 018062 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (361)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l 115 (361)
|....-+.+.+.+++++.+.-++-..-+.=-+|..++.|.++=-..+... . .+.++++.||+++||+|....+
T Consensus 119 ~st~g~~~~~i~~~l~~~~~~~i~~i~~~~~~p~~i~a~a~~i~~~l~~~----~-~~~~~~~~llfs~HG~P~~~~~-- 191 (310)
T 2h1v_A 119 TFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASM----P-EDERENAMLIVSAHSLPEKIKE-- 191 (310)
T ss_dssp TTTHHHHHHHHHHHHHHHCSCEEEECCCCTTCHHHHHHHHHHHHHHHHHS----C-HHHHTSEEEEEEEECCBGGGGG--
T ss_pred hhhHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHHHHHhc----c-cccCCCceEEEecCCCchhhcc--
Confidence 34444555555555544333346666667677777777765411111100 0 0112356899999999977543
Q ss_pred HhcCCcEEeCcChhhHHHHHHHHHHhhC
Q 018062 116 NNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (361)
Q Consensus 116 ~~kgl~ViDATCP~V~kv~~~v~~~~~~ 143 (361)
+ .-|+-..+++.++.+.++
T Consensus 192 --~-------gDpY~~~~~~t~~~l~e~ 210 (310)
T 2h1v_A 192 --F-------GDPYPDQLHESAKLIAEG 210 (310)
T ss_dssp --G-------TCCHHHHHHHHHHHHHHH
T ss_pred --C-------CCChHHHHHHHHHHHHHH
Confidence 2 356878888777766553
No 24
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=58.14 E-value=58 Score=30.39 Aligned_cols=94 Identities=7% Similarity=-0.024 Sum_probs=68.0
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHh------
Q 018062 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN------ 117 (361)
Q Consensus 44 ~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~------ 117 (361)
-||...++. +-+|+++- .++.-.+.|.+.|....++ +.++-.+.-|||..=.-++.+.+-+..
T Consensus 17 ~mA~~L~~~--G~~v~v~d---r~~~~~~~l~~~Ga~~a~s------~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~ 85 (300)
T 3obb_A 17 PMATNLLKA--GYLLNVFD---LVQSAVDGLVAAGASAARS------ARDAVQGADVVISMLPASQHVEGLYLDDDGLLA 85 (300)
T ss_dssp HHHHHHHHT--TCEEEEEC---SSHHHHHHHHHTTCEECSS------HHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTT
T ss_pred HHHHHHHhC--CCeEEEEc---CCHHHHHHHHHcCCEEcCC------HHHHHhcCCceeecCCchHHHHHHHhchhhhhh
Confidence 466666664 34677664 4788999999999998875 344444444667766667777766542
Q ss_pred ---cCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 018062 118 ---KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (361)
Q Consensus 118 ---kgl~ViDATCP~V~kv~~~v~~~~~~Gy~II 148 (361)
.|..+||.|=-.....++.++.+.++|-..+
T Consensus 86 ~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l 119 (300)
T 3obb_A 86 HIAPGTLVLECSTIAPTSARKIHAAARERGLAML 119 (300)
T ss_dssp SCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 4678999988888889999999999886655
No 25
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=57.17 E-value=32 Score=31.19 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=55.6
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHHHHHHhhhc--C-cccccccccccccccHHHHHHHHHHHHch-hcCCcEEEEEcCCC
Q 018062 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKF--G-VENVNEHFISFNTICDATQERQDAMYKMV-EEKVDLILVVGGWN 292 (361)
Q Consensus 218 ~kv~vvsQTT-~s~~~~~~I~~~l~~~~~~~~--~-~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa-~~~vD~miVIGGkn 292 (361)
-+|+++.-.| ....-+.++...++..+...- + .....-++.+.||-|.....+ +++++|. ...||+ |||...
T Consensus 5 i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~ 81 (358)
T 3hut_A 5 LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQAR-TIARAFVDDPRVVG--VLGDFS 81 (358)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHHCTTEEE--EEECSS
T ss_pred EEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHH-HHHHHHhccCCcEE--EEcCCC
Confidence 3788776544 333334455444443221110 0 000113456778877765544 4455665 345555 568888
Q ss_pred CchhHHHHHHHHhcCCCeEEeCC
Q 018062 293 SSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
|+.+..+.+++.+.+.|......
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~ 104 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTA 104 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSC
T ss_pred cHHHHHHHHHHHHCCCcEEecCC
Confidence 88899999999999999887644
No 26
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=56.99 E-value=78 Score=27.89 Aligned_cols=90 Identities=12% Similarity=-0.043 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccc-cccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCch
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v-~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSN 295 (361)
++|+++....-+ .-|..+.+-+++...+. + -++.+ .++ ....++| +.++.|.+..+|.+|+.+...+..
T Consensus 5 ~~I~~i~~~~~~-~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQSGM-DYWKRCLKGFEDAAQAL-N-----VTVEYRGAA--QYDIQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESSTTS-THHHHHHHHHHHHHHHH-T-----CEEEEEECS--SSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccCCC-hHHHHHHHHHHHHHHHc-C-----CEEEEeCCC--cCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 578888876543 45777777776643332 2 12222 121 2233444 344555557899999987654433
Q ss_pred hHHHHHHHHhcCCCeEEeCCCC
Q 018062 296 TSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~ 317 (361)
...++-+.+.+.|...+.+..
T Consensus 76 -~~~~~~~~~~~iPvV~~~~~~ 96 (305)
T 3g1w_A 76 -TDTINKAVDAGIPIVLFDSGA 96 (305)
T ss_dssp -HHHHHHHHHTTCCEEEESSCC
T ss_pred -HHHHHHHHHCCCcEEEECCCC
Confidence 445555667889999998754
No 27
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=56.87 E-value=36 Score=28.53 Aligned_cols=67 Identities=6% Similarity=-0.055 Sum_probs=52.0
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEE
Q 018062 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (361)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~III 149 (361)
.++.|+++|+.+. |++ -+-.+.....++..|+.+++...|...-++...+++.-+...++.
T Consensus 47 ~l~~L~~~g~~~~------------------i~T-~~~~~~~~~~~~~lgi~~~~~~~~k~~~l~~~~~~~~~~~~~~~~ 107 (176)
T 3mmz_A 47 GIAALRKSGLTML------------------ILS-TEQNPVVAARARKLKIPVLHGIDRKDLALKQWCEEQGIAPERVLY 107 (176)
T ss_dssp HHHHHHHTTCEEE------------------EEE-SSCCHHHHHHHHHHTCCEEESCSCHHHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHCCCeEE------------------EEE-CcChHHHHHHHHHcCCeeEeCCCChHHHHHHHHHHcCCCHHHEEE
Confidence 6888888887643 111 123456777888889989999999999999999888777788999
Q ss_pred EecCCC
Q 018062 150 HGKYSH 155 (361)
Q Consensus 150 iG~~~H 155 (361)
+||..+
T Consensus 108 vGD~~n 113 (176)
T 3mmz_A 108 VGNDVN 113 (176)
T ss_dssp EECSGG
T ss_pred EcCCHH
Confidence 999864
No 28
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=56.54 E-value=29 Score=32.51 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=40.1
Q ss_pred CceEEecccccCHHHHHHHHHcCcEEecCCcccccccccc-CCCEEEEcCCCCCH--HHHHHHHhcCCcEE
Q 018062 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN-KGDVVVLPAFGAAV--EEMVTLNNKNVQIV 123 (361)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~-~g~~VIIrAHGv~~--~v~~~l~~kgl~Vi 123 (361)
-.|... +.--++...+.|++.|+.+..+. +.+.+. .+.-+|+.+=|+|| ..+++++++|+.|+
T Consensus 29 ~~V~~~-D~~~~~~~~~~L~~~gi~v~~g~----~~~~l~~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~ 94 (326)
T 3eag_A 29 FEVSGC-DAKMYPPMSTQLEALGIDVYEGF----DAAQLDEFKADVYVIGNVAKRGMDVVEAILNLGLPYI 94 (326)
T ss_dssp CEEEEE-ESSCCTTHHHHHHHTTCEEEESC----CGGGGGSCCCSEEEECTTCCTTCHHHHHHHHTTCCEE
T ss_pred CEEEEE-cCCCCcHHHHHHHhCCCEEECCC----CHHHcCCCCCCEEEECCCcCCCCHHHHHHHHcCCcEE
Confidence 445543 33233556789999999987542 123443 23236666779986 45778899999987
No 29
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=56.31 E-value=66 Score=28.70 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=51.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhH
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~ 297 (361)
+|+++..++-+ -|..+.+-+++...+ .+ -++.+.++ ......+| +.++.|.+.++|.+|+.+.. ++...
T Consensus 3 ~Ig~i~~~~~~--~~~~~~~gi~~~~~~-~g-----~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~~ 72 (313)
T 2h3h_A 3 TIGVIGKSVHP--YWSQVEQGVKAAGKA-LG-----VDTKFFVP-QKEDINAQLQMLESFIAEGVNGIAIAPSD-PTAVI 72 (313)
T ss_dssp EEEEECSCSSH--HHHHHHHHHHHHHHH-HT-----CEEEEECC-SSSCHHHHHHHHHHHHHTTCSEEEECCSS-TTTTH
T ss_pred EEEEEeCCCcH--HHHHHHHHHHHHHHH-cC-----CEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHHH
Confidence 67888765433 677777777664332 22 12322221 02223444 34555555789999987654 33334
Q ss_pred HHHHHHHhcCCCeEEeCCC
Q 018062 298 HLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~ 316 (361)
..++.+.+.+.|...+.+.
T Consensus 73 ~~~~~~~~~~iPvV~~~~~ 91 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTD 91 (313)
T ss_dssp HHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHCCCeEEEeCCC
Confidence 4556666788999988875
No 30
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=54.81 E-value=22 Score=31.87 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=68.5
Q ss_pred chhHHHHHHHcCCccccc-ceEEEEe--------------CCCCCcccHHHHHHHHHHHHhh-C---CCCceEEeccccc
Q 018062 6 TSDIIKKLKENGFEYTWG-NVKVKLA--------------ESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEIIH 66 (361)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~mkI~lA--------------~~~GFC~GV~RAI~~a~~~~~~-~---~~~~Vy~lG~iIH 66 (361)
.+++.+.|++.|+....- .+++.-. ......|==.+|++...+.+.+ + ++.++|+.|+=
T Consensus 18 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~~~~~~~~i~aVG~~-- 95 (254)
T 4es6_A 18 CAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQPPQQTWCSVGAA-- 95 (254)
T ss_dssp HHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHCSSCCSCEEEESSHH--
T ss_pred hHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECHH--
Confidence 467888999998544332 2333221 1122333334555555444432 1 23579999964
Q ss_pred CHHHHHHHHHcCcEEecCCcc--c----cccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 018062 67 NPTVNKRLEEMAVQNIPVEEG--K----KQFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (361)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~~~~--~----~~l~-----el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDA 125 (361)
.-+.|++.|+...--.++ . +.+. ..+....+++|+-+-.+...+.|+++|..|...
T Consensus 96 ---Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~ 162 (254)
T 4es6_A 96 ---TAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDYL 162 (254)
T ss_dssp ---HHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEE
T ss_pred ---HHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEE
Confidence 558899999976432211 1 1221 223334578999999999999999999988443
No 31
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=54.64 E-value=61 Score=27.51 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=23.0
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH---HhcCCcEEeCcCh
Q 018062 94 VNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTCP 128 (361)
Q Consensus 94 l~~g~~-VIIrAHGv~~~v~~~l---~~kgl~ViDATCP 128 (361)
+.++|. ++|+.-|-++++.+.+ +++|..+|=-|+.
T Consensus 111 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 111 GQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 456776 4699999999886544 4555555544443
No 32
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=54.61 E-value=68 Score=28.64 Aligned_cols=90 Identities=20% Similarity=0.146 Sum_probs=56.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
.+|+++.-+. +-.-|.++.+-+++...+. + -++.+.+ +....++| +.++.|.+.++|.+|+.+.. +...
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~--~~~~~~~~~~~i~~~~~~~vdgiIi~~~~-~~~~ 73 (330)
T 3uug_A 4 GSVGIAMPTK-SSARWIDDGNNIVKQLQEA-G-----YKTDLQY--ADDDIPNQLSQIENMVTKGVKVLVIASID-GTTL 73 (330)
T ss_dssp CEEEEEECCS-SSTHHHHHHHHHHHHHHHT-T-----CEEEEEE--CTTCHHHHHHHHHHHHHHTCSEEEECCSS-GGGG
T ss_pred cEEEEEeCCC-cchHHHHHHHHHHHHHHHc-C-----CEEEEee--CCCCHHHHHHHHHHHHHcCCCEEEEEcCC-chhH
Confidence 5788887654 3445777777777644322 2 2333443 33344555 34555545789999987654 3344
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
...++.+.+.|.|...+.+..
T Consensus 74 ~~~~~~~~~~giPvV~~~~~~ 94 (330)
T 3uug_A 74 SDVLKQAGEQGIKVIAYDRLI 94 (330)
T ss_dssp HHHHHHHHHTTCEEEEESSCC
T ss_pred HHHHHHHHHCCCCEEEECCCC
Confidence 556667778899999998754
No 33
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=54.39 E-value=19 Score=31.90 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=70.7
Q ss_pred ccchhHHHHHHHcCCccccc-ceEEEEe-----------CCCCCcccHHHHHHHHHHHHh-hCCCCceEEecccccCHHH
Q 018062 4 EYTSDIIKKLKENGFEYTWG-NVKVKLA-----------ESYGFCWGVERAVQIAYEARK-QFPEEKIWITNEIIHNPTV 70 (361)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~mkI~lA-----------~~~GFC~GV~RAI~~a~~~~~-~~~~~~Vy~lG~iIHN~~V 70 (361)
+..+++.+.|++.|+....- .+++.-. ......|==.+|++...+.+. ..++.++|+.|+ ..
T Consensus 11 ~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~aV~~~~~~l~~~l~~~~~~aVG~-----~T 85 (240)
T 3mw8_A 11 GKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYAVGD-----AT 85 (240)
T ss_dssp TSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEESSH-----HH
T ss_pred HHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHHHHHHHHHHHhhCcCCeEEEECH-----HH
Confidence 44678899999998654332 3343321 123334444566666655553 234568999996 45
Q ss_pred HHHHHHcCcEEecCCc---ccccccc------ccCCCEEEEcCCCCCHHHHHHHHhcCCcEE
Q 018062 71 NKRLEEMAVQNIPVEE---GKKQFDV------VNKGDVVVLPAFGAAVEEMVTLNNKNVQIV 123 (361)
Q Consensus 71 v~~L~~~GV~~v~~~~---~~~~l~e------l~~g~~VIIrAHGv~~~v~~~l~~kgl~Vi 123 (361)
-+.|++.|+..+--++ ..+.|-+ ++....+++|+-+-.+...+.|+++|..|.
T Consensus 86 a~~L~~~G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~ 147 (240)
T 3mw8_A 86 ADALALQGITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVS 147 (240)
T ss_dssp HHHHHHTTCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEE
T ss_pred HHHHHHcCCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEE
Confidence 5899999996432221 1122222 222345689999999999999999998763
No 34
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=53.17 E-value=1.1e+02 Score=26.51 Aligned_cols=90 Identities=9% Similarity=0.095 Sum_probs=55.3
Q ss_pred ceEEEEEcCC----CChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHH-chhcCCcEEEEEcCCC
Q 018062 218 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWN 292 (361)
Q Consensus 218 ~kv~vvsQTT----~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~e-La~~~vD~miVIGGkn 292 (361)
..|+++...+ ++..-|..+.+-+.+...+. + -++.++++- ...++|..+.+ +.+..+|.+|+.+...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE-G-----YALYMSTGE--TEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT-T-----CEEEECCCC--SHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHc-C-----CEEEEEeCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 5799987763 44556777777776643322 2 233344332 23344444433 4346899999987654
Q ss_pred CchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 293 SSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
+. .+++.+.+.+.|...+.+..+
T Consensus 81 ~~---~~~~~l~~~~iPvV~~~~~~~ 103 (292)
T 3k4h_A 81 ND---RIIQYLHEQNFPFVLIGKPYD 103 (292)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCSS
T ss_pred Ch---HHHHHHHHCCCCEEEECCCCC
Confidence 32 466677788999999987643
No 35
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=52.72 E-value=16 Score=33.43 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=57.3
Q ss_pred ceEEEEEcCCCCh-HHHHHHHHHHHHHHhhhcCc-ccccccccccccccHHHHHHHHHHHHchhcC-CcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGV-ENVNEHFISFNTICDATQERQDAMYKMVEEK-VDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~-~~~~~I~~~l~~~~~~~~~~-~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~-vD~miVIGGknSS 294 (361)
.+||++.-.|=.. ..-.++.+-++..+.. ... ....-++.+.||-|...... +++++|.... ||+ |||...|+
T Consensus 17 ~~iG~~~plsG~~a~~g~~~~~g~~~a~~~-in~i~G~~i~l~~~D~~~~~~~~~-~~~~~l~~~~~v~~--iiG~~~s~ 92 (366)
T 3td9_A 17 VKIAVILPMTGGISAFGRMVWEGIQIAHEE-KPTVLGEEVELVLLDTRSEKTEAA-NAAARAIDKEKVLA--IIGEVASA 92 (366)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHH-CCEETTEEEEEEEEECTTCHHHHH-HHHHHHHHTSCCSE--EEECSSHH
T ss_pred EEEEEEECCcCcchhcCHHHHHHHHHHHHH-hhhcCCeEEEEEEecCCCCHHHHH-HHHHHHhccCCeEE--EEccCCch
Confidence 5898776555443 3334454444432211 110 00113566788888776554 4555665332 665 55888899
Q ss_pred hhHHHHHHHHhcCCCeEEeCC
Q 018062 295 NTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~ 315 (361)
.+..+.+++++.+.|......
T Consensus 93 ~~~~~~~~~~~~~iP~i~~~~ 113 (366)
T 3td9_A 93 HSLAIAPIAEENKVPMVTPAS 113 (366)
T ss_dssp HHHHHHHHHHHTTCCEEESSC
T ss_pred hHHHHHHHHHhCCCeEEecCC
Confidence 999999999999999877654
No 36
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=52.31 E-value=36 Score=31.67 Aligned_cols=94 Identities=9% Similarity=-0.065 Sum_probs=59.5
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHH-------HHH
Q 018062 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMV-------TLN 116 (361)
Q Consensus 44 ~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~-------~l~ 116 (361)
-||...++. +-+|+.+- -|+..+++|.+.|+...++ +.++-+.+-|||..=.-++.+.+ ...
T Consensus 19 ~mA~~L~~~--G~~V~v~d---r~~~~~~~l~~~G~~~~~s------~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~ 87 (297)
T 4gbj_A 19 PIAEILLEA--GYELVVWN---RTASKAEPLTKLGATVVEN------AIDAITPGGIVFSVLADDAAVEELFSMELVEKL 87 (297)
T ss_dssp HHHHHHHHT--TCEEEEC----------CTTTTTTCEECSS------GGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHC--CCeEEEEe---CCHHHHHHHHHcCCeEeCC------HHHHHhcCCceeeeccchhhHHHHHHHHHHhhc
Confidence 356666663 34677654 3677888999999999875 34444444466666554544433 234
Q ss_pred hcCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 018062 117 NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (361)
Q Consensus 117 ~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~II 148 (361)
.+|-.+||.+=-.....++.++.+.++|...+
T Consensus 88 ~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l 119 (297)
T 4gbj_A 88 GKDGVHVSMSTISPETSRQLAQVHEWYGAHYV 119 (297)
T ss_dssp CTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence 56778999888888888999999999987655
No 37
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=51.94 E-value=99 Score=26.88 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCc--
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSS-- 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSS-- 294 (361)
..|+++.... +-.-|..+.+-+++...+. + -++.++++ ....++|. .++.|.+..+|.+|+.+...+.
T Consensus 16 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 16 KTIGVLTTYI-SDYIFPSIIRGIESYLSEQ-G-----YSMLLTST--NNNPDNERRGLENLLSQHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CEEEEEESCS-SSTTHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC
T ss_pred ceEEEEeCCC-CchHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCChHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 5788887653 4445777777776644332 2 12333322 23345553 3444545789999998865441
Q ss_pred hhHHHHHHHHhcCCCeEEeCCCC
Q 018062 295 NTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
....+++-+.+.+.|...+.+..
T Consensus 87 ~~~~~~~~~~~~~iPvV~~~~~~ 109 (298)
T 3tb6_A 87 PNIGYYLNLEKNGIPFAMINASY 109 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCC
T ss_pred CcHHHHHHHHhcCCCEEEEecCc
Confidence 34456666778899999998753
No 38
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=51.78 E-value=1.1e+02 Score=26.51 Aligned_cols=90 Identities=10% Similarity=0.159 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
+.|+++... ++-.-|.++.+-+.+...+. + -++.+.++ ....++| +.++.|.+.++|.+|+.+.. ++..
T Consensus 2 ~~Igvi~~~-~~~~f~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~ 71 (271)
T 2dri_A 2 DTIALVVST-LNNPFFVSLKDGAQKEADKL-G-----YNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTD-SDAV 71 (271)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHTTTTEEEEEECCSS-TTTT
T ss_pred cEEEEEecC-CCCHHHHHHHHHHHHHHHHc-C-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHH
Confidence 368887754 44456777777776643322 1 12222222 1222344 34555555689999986543 3333
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
..+.+.+.+.+.|...+.+..
T Consensus 72 ~~~~~~~~~~~iPvV~i~~~~ 92 (271)
T 2dri_A 72 GNAVKMANQANIPVITLDRQA 92 (271)
T ss_dssp HHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHCCCcEEEecCCC
Confidence 445566667889999998753
No 39
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=51.67 E-value=62 Score=29.32 Aligned_cols=107 Identities=7% Similarity=-0.071 Sum_probs=60.1
Q ss_pred ccchhHHHHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-CcEEe
Q 018062 4 EYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-AVQNI 82 (361)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~-GV~~v 82 (361)
|.+|--|+.++--|..+.+.+++|++. .|-+-|...+...++. +..|.+..+=++ +. ++.|.+. ++..+
T Consensus 11 ~~~~~~~~~~~~~Pifl~L~gk~VLVV------GgG~va~~ka~~Ll~~--GA~VtVvap~~~-~~-l~~l~~~~~i~~i 80 (223)
T 3dfz_A 11 HHSSGHIEGRHMYTVMLDLKGRSVLVV------GGGTIATRRIKGFLQE--GAAITVVAPTVS-AE-INEWEAKGQLRVK 80 (223)
T ss_dssp -----------CCEEEECCTTCCEEEE------CCSHHHHHHHHHHGGG--CCCEEEECSSCC-HH-HHHHHHTTSCEEE
T ss_pred ccccCcccccCccccEEEcCCCEEEEE------CCCHHHHHHHHHHHHC--CCEEEEECCCCC-HH-HHHHHHcCCcEEE
Confidence 345666777777777778889999988 4557788888888875 357888877544 43 4556555 47777
Q ss_pred cCCccccccccccCCCEEEEcCCCCCH---HHHHHHHhcCCcEEeC
Q 018062 83 PVEEGKKQFDVVNKGDVVVLPAFGAAV---EEMVTLNNKNVQIVDT 125 (361)
Q Consensus 83 ~~~~~~~~l~el~~g~~VIIrAHGv~~---~v~~~l~~kgl~ViDA 125 (361)
...- ..+++. +..+||-|-|.+. .+.+.++ +|+-|-.+
T Consensus 81 ~~~~---~~~dL~-~adLVIaAT~d~~~N~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 81 RKKV---GEEDLL-NVFFIVVATNDQAVNKFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp CSCC---CGGGSS-SCSEEEECCCCTHHHHHHHHHSC-TTCEEEC-
T ss_pred ECCC---CHhHhC-CCCEEEECCCCHHHHHHHHHHHh-CCCEEEEe
Confidence 5421 123443 4457788888774 2333433 55555333
No 40
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=51.65 E-value=41 Score=30.49 Aligned_cols=117 Identities=11% Similarity=0.079 Sum_probs=68.9
Q ss_pred cchhHHHHHHHcCCccccc-ceEEEEe--------------CCCCCcccHHHHHHHHHHHHhh-C---CCCceEEecccc
Q 018062 5 YTSDIIKKLKENGFEYTWG-NVKVKLA--------------ESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEII 65 (361)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~mkI~lA--------------~~~GFC~GV~RAI~~a~~~~~~-~---~~~~Vy~lG~iI 65 (361)
..+++.+.|++.|+....- .+++.-. ......|==.+||+...+.+.+ + ++.++|+.|+
T Consensus 25 ~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~~~~~~~~i~aVG~-- 102 (269)
T 3re1_A 25 ESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVWPQPPMQPWFSVGS-- 102 (269)
T ss_dssp HHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHCSSCCCSCEEESSH--
T ss_pred HHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH--
Confidence 3567888999988554332 2333211 1122333335555555444432 1 1257999996
Q ss_pred cCHHHHHHHHHcCcEEecCCcc--cc----ccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCc
Q 018062 66 HNPTVNKRLEEMAVQNIPVEEG--KK----QFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (361)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~~~~~--~~----~l~-----el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDAT 126 (361)
..-+.|++.|+...-..++ .+ .+. ..+....+++|+-+-.+...+.|+++|..|....
T Consensus 103 ---~Ta~aL~~~G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~ 171 (269)
T 3re1_A 103 ---ATGQILLDYGLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLP 171 (269)
T ss_dssp ---HHHHHHHHTTCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEE
T ss_pred ---HHHHHHHHcCCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHCCCEEEEEe
Confidence 4568999999986432111 11 111 2222345689999999999999999999885443
No 41
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=51.36 E-value=70 Score=28.47 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.-. ++-.-|..+.+-+++...+. + -++.+.++ .....+| +.++.|.+..+|.+|+.+...++ .
T Consensus 3 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-~ 72 (313)
T 3m9w_A 3 VKIGMAIDD-LRLERWQKDRDIFVKKAESL-G-----AKVFVQSA--NGNEETQMSQIENMINRGVDVLVIIPYNGQV-L 72 (313)
T ss_dssp CEEEEEESC-CSSSTTHHHHHHHHHHHHHT-S-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEECSSTTS-C
T ss_pred cEEEEEeCC-CCChHHHHHHHHHHHHHHHc-C-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-h
Confidence 368887654 33344566666665543222 2 23344433 3333444 44555555789999998865443 3
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
..+++.+.+.+.|...+.+..
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~ 93 (313)
T 3m9w_A 73 SNVVKEAKQEGIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHHTTTCEEEEESSCC
T ss_pred HHHHHHHHHCCCeEEEECCcC
Confidence 455666778899999998754
No 42
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=50.76 E-value=66 Score=28.82 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhH
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~ 297 (361)
..||++ + +++-.-|.++++-+++.+.+.-..+...-.+.+.||--....++ +.++.|.+.++|++|++|. +.+.
T Consensus 9 ~~IGvi-~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~-~~~~~l~~~~vDgII~~~~---~~~~ 82 (302)
T 2qh8_A 9 AKVAVS-Q-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAV-QIARQFVGENPDVLVGIAT---PTAQ 82 (302)
T ss_dssp EEEEEE-E-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHH-HHHHHHHHTCCSEEEEESH---HHHH
T ss_pred cEEEEE-E-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHH-HHHHHHHhCCCCEEEECCh---HHHH
Confidence 589998 5 46666788888888775543311100000122233333333222 3456666678999999873 2233
Q ss_pred HHHHHHHhcCCCeEEeCC
Q 018062 298 HLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 298 kL~eia~~~~~~t~~Ie~ 315 (361)
.+.+ ...+.|..++..
T Consensus 83 ~~~~--~~~~iPvV~~~~ 98 (302)
T 2qh8_A 83 ALVS--ATKTIPIVFTAV 98 (302)
T ss_dssp HHHH--HCSSSCEEEEEE
T ss_pred HHHh--cCCCcCEEEEec
Confidence 4443 256788887753
No 43
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=50.12 E-value=14 Score=34.29 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=40.2
Q ss_pred ccccccccccHHHHHHHHHHHHchh-cCCcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 255 EHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~-~~vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
-++.+.|+-|.+..-. +++++|.. ..|++ |||+..|+.+..+..++.+.+.|.+
T Consensus 47 i~l~~~D~~~~~~~a~-~~~~~li~~~~v~a--iiG~~~s~~~~a~~~~~~~~~ip~i 101 (374)
T 3n0x_A 47 IVVITKDDQSKPDLSK-AALAEAYQDDGADI--AIGTSSSAAALADLPVAEENKKILI 101 (374)
T ss_dssp EEEEEEECTTCHHHHH-HHHHHHHHTSCCSE--EEECSSHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEEecCCCCHHHHH-HHHHHHHHhCCceE--EEcCCCcHHHHHHHHHHHHcCccEE
Confidence 3567889988876554 44566652 24665 6699999999999999999887754
No 44
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.96 E-value=40 Score=26.43 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=33.2
Q ss_pred hcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEe-CCCCCCCCC
Q 018062 279 EEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIGPG 322 (361)
Q Consensus 279 ~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~I-e~~~eL~~~ 322 (361)
.+++-++|+-.+ -|.|+. +|-..|++.+.|.|.. .|..||-..
T Consensus 29 ~gka~lViiA~D-~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a 73 (99)
T 3j21_Z 29 TGGAKLIIVAKN-APKEIKDDIYYYAKLSDIPVYEFEGTSVELGTL 73 (99)
T ss_dssp HTCCSEEEEECC-CCHHHHHHHHHHHHHTTCCEEEECCCSCGGGGT
T ss_pred cCCccEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHH
Confidence 467888888888 678877 6677899999998766 888877544
No 45
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=49.87 E-value=1.3e+02 Score=26.24 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=50.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchhH
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT~ 297 (361)
.|+++... ++-.-|.++.+-+.+...+. + -++.+.++ ....++| +.++.|.+.+||.+|+.+. .++...
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVIST-LNNPFFVTLKNGAEEKAKEL-G-----YKIIVEDS--QNDSSKELSNVEDLIQQKVDVLLINPV-DSDAVV 72 (283)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCS-STTTTH
T ss_pred EEEEEecC-CCCHHHHHHHHHHHHHHHhc-C-----cEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCC-chhhhH
Confidence 57777644 44455777777776643322 2 12222221 1223444 3455555578999998764 333333
Q ss_pred HHHHHHHhcCCCeEEeCCC
Q 018062 298 HLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~ 316 (361)
...+.+.+.+.|...+.+.
T Consensus 73 ~~~~~~~~~~iPvV~~~~~ 91 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRS 91 (283)
T ss_dssp HHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHCCCeEEEecCC
Confidence 4556667788999988864
No 46
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=49.85 E-value=25 Score=28.96 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=23.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcChhhH
Q 018062 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (361)
Q Consensus 100 VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~ 131 (361)
|++.+--..++..+.|++.|++++. -|..|.
T Consensus 86 v~~~~G~~~~e~~~~a~~~Girvv~-nC~gv~ 116 (122)
T 3ff4_A 86 VIFNPGTENEELEEILSENGIEPVI-GCTLVM 116 (122)
T ss_dssp EEECTTCCCHHHHHHHHHTTCEEEE-SCHHHH
T ss_pred EEECCCCChHHHHHHHHHcCCeEEC-CcCeEE
Confidence 3444434578899999999999997 898764
No 47
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=49.46 E-value=7.7 Score=36.19 Aligned_cols=58 Identities=9% Similarity=0.235 Sum_probs=41.4
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
++.+.|+-|.....=.+++++|. .+=.+..|||+..|+.+.-+.+++.+.+.|...-.
T Consensus 46 elv~~D~~~~~p~~a~~~a~~Li-~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~ 103 (371)
T 4f06_A 46 EFVYRDEVSPNPAQSKALAQELI-VKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMN 103 (371)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHH-HTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-hcCCCEEEEecccccchHHHHHHHHhhcCCccccc
Confidence 56688888753334445667775 22234457899999999999999999998876543
No 48
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=49.18 E-value=1.3e+02 Score=26.03 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=50.1
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCch
Q 018062 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 218 ~kv~vvsQTT-~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSN 295 (361)
.+|+++...+ ++..-|.++.+-+++...+ .+ -++.++++ ....++| +.++.|.+..+|.+|+.+...+.
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~- 90 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-----RQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSV- 90 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHH-TT-----CEEEEECC--TTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-
Confidence 5799987653 4445567777776654322 22 12333332 2233444 34555555689999998764332
Q ss_pred hHHHHHHHHh-cCCCeEEeCCC
Q 018062 296 TSHLQEIAED-RGIPSYWIDSE 316 (361)
Q Consensus 296 T~kL~eia~~-~~~~t~~Ie~~ 316 (361)
..++.+.+ .+.|...+.+.
T Consensus 91 --~~~~~l~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 91 --DEIDDIIDAHSQPIMVLNRR 110 (296)
T ss_dssp --HHHHHHHHTCSSCEEEESCC
T ss_pred --HHHHHHHhcCCCCEEEEccc
Confidence 33344556 78899888764
No 49
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=48.92 E-value=11 Score=35.59 Aligned_cols=53 Identities=6% Similarity=0.051 Sum_probs=40.7
Q ss_pred ccccccccc-HHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 256 HFISFNTIC-DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 256 ~~~v~nTIC-~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
++.+.|+-| .+..-.+ ++.+|.. + .++.|||+..|+.+.-...++.+.+.|..
T Consensus 44 ~~~~~D~~~~d~~~a~~-~a~~li~-~-~V~aiiG~~~S~~~~a~~~i~~~~~iP~I 97 (389)
T 3o21_A 44 NYHVDHLDSSNSFSVTN-AFCSQFS-R-GVYAIFGFYDQMSMNTLTSFCGALHTSFV 97 (389)
T ss_dssp EEEEEECCTTCHHHHHH-HHHHHHT-T-TCSCEEECCCTTTHHHHHHHHHHHTCCEE
T ss_pred EEEEEecCCCChHHHHH-HHHHHHh-c-CcEEEEeCCChhHHHHHHHHhccCCCcee
Confidence 566889989 5554444 4556653 3 67778999999999999999999998865
No 50
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=48.06 E-value=96 Score=25.84 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=15.8
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH
Q 018062 94 VNKGDV-VVLPAFGAAVEEMVTL 115 (361)
Q Consensus 94 l~~g~~-VIIrAHGv~~~v~~~l 115 (361)
+.++|. ++|+..|-++++.+.+
T Consensus 77 ~~~~d~vI~iS~sG~t~~~~~~~ 99 (186)
T 1m3s_A 77 LAEGDLVIIGSGSGETKSLIHTA 99 (186)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHH
T ss_pred CCCCCEEEEEcCCCCcHHHHHHH
Confidence 345675 5689999999886554
No 51
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=47.96 E-value=1.5e+02 Score=26.78 Aligned_cols=90 Identities=13% Similarity=0.199 Sum_probs=56.2
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCch
Q 018062 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 218 ~kv~vvsQTT-~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSN 295 (361)
..|+++...+ ++-.-|.++.+-+.+...+. + -++.++++ ....++|. .++.|.+..+|.+|+.+...+
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-- 131 (338)
T 3dbi_A 62 QTLGLVVTNTLYHGIYFSELLFHAARMAEEK-G-----RQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLS-- 131 (338)
T ss_dssp SEEEEEECTTTTSTTHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTSHHHHHHHHHHHHHTTCSEEEECCSSSC--
T ss_pred CEEEEEecCCcccChhHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC--
Confidence 5799887652 44455777777776643322 2 12333332 22334443 445555578999999876443
Q ss_pred hHHHHHHHHhcCCCeEEeCCCC
Q 018062 296 TSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~ 317 (361)
...+.+.+++.+.|...+....
T Consensus 132 ~~~~~~~~~~~~iPvV~~~~~~ 153 (338)
T 3dbi_A 132 VDEIDDIIDAHSQPIMVLNRRL 153 (338)
T ss_dssp HHHHHHHHHHCSSCEEEESSCC
T ss_pred hHHHHHHHHcCCCCEEEEcCCC
Confidence 3568888888888998887643
No 52
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=47.24 E-value=64 Score=27.50 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=48.9
Q ss_pred CceEEecccccCHHHHHHHHHc--CcEEecCCccccc-cccccC------CCEEEEcCCCCCHHHHHHHHhcCCcEEeCc
Q 018062 56 EKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQ-FDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (361)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv~~L~~~--GV~~v~~~~~~~~-l~el~~------g~~VIIrAHGv~~~v~~~l~~kgl~ViDAT 126 (361)
..|+.+|+++. +.+++.|++. .+.+|.++-+... +..+|. +..-|+=.||-++.
T Consensus 52 D~ii~~GD~~~-~~~~~~l~~~~~~v~~V~GNhD~~~~~~~lp~~~~~~~~g~~i~l~HG~~~~---------------- 114 (178)
T 2kkn_A 52 DGVIGLGDYVD-LDTVILLEKFSKEFYGVHGNMDYPDVKEHLPFSKVLLVEGVTIGMCHGWGAP---------------- 114 (178)
T ss_dssp SEEEESSCBSC-HHHHHHHHHHTSSEEECCCSSSCGGGGGTSCSCEEEEETTEEEEECCSCCCH----------------
T ss_pred CEEEECCCCCC-HHHHHHHHhcCCCEEEEECCCCcHHHHhhCCcceEEEECCEEEEEECCCCCC----------------
Confidence 46999999987 5788999887 4666754322111 223332 12335667886421
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEEecCCCceee
Q 018062 127 CPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (361)
Q Consensus 127 CP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~ 159 (361)
. .....+.+..+.+..+++.|+--.|.+.
T Consensus 115 --~--~~~~~~~~~~~~~~d~vi~GHtH~~~~~ 143 (178)
T 2kkn_A 115 --W--DLKDRLLKVFNEKPQVILFGHTHEPEDT 143 (178)
T ss_dssp --H--HHHHHHHHHSSSCCSEEECCSCSSCCEE
T ss_pred --C--CHHHHHHHHhccCCCEEEECccCCCCeE
Confidence 0 0112222233378899999988777665
No 53
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=46.91 E-value=12 Score=34.90 Aligned_cols=55 Identities=5% Similarity=-0.008 Sum_probs=39.8
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
++.+.|+-|.....-..++.+|... .+..|||+..|+.+.-+..++.+.+.|-.-
T Consensus 35 ~~~~~d~~~~d~~~a~~~~~~li~~--~V~aiiG~~~S~~~~av~~~~~~~~ip~is 89 (376)
T 3hsy_A 35 TPHIDNLEVANSFAVTNAFCSQFSR--GVYAIFGFYDKKSVNTITSFCGTLHVSFIT 89 (376)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCTTTHHHHHHHHHHHTCEEEE
T ss_pred EEEEeecCCCChHHHHHHHHHHHhc--CcEEEECCCchhHHHHHHHHhccCcCceee
Confidence 4456687784444444555666533 566799999999999999999999877543
No 54
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=46.64 E-value=99 Score=30.04 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=43.4
Q ss_pred eEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHH
Q 018062 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137 (361)
Q Consensus 58 Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v 137 (361)
+-..-+.=.+|..++.|.++=-..++..+ .+.+++..|+++|||+|....+ +| -|+...+++.+
T Consensus 162 i~~i~~~~~~p~~I~ala~~I~~~l~~~~-----~~~~~~~~llfSaHglP~~~~~----~G-------DpY~~q~~~ta 225 (362)
T 1lbq_A 162 WSVIDRWPTNEGLIKAFSENITKKLQEFP-----QPVRDKVVLLFSAHSLPMDVVN----TG-------DAYPAEVAATV 225 (362)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHHTSC-----STTGGGCEEEEEEECCBHHHHT----TT-------CSHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhcC-----cccCCCeEEEEecCCCcccccc----CC-------CcHHHHHHHHH
Confidence 44666677778877777654211111100 0011234899999999988763 34 57888888888
Q ss_pred HHHhhC
Q 018062 138 EKHKKG 143 (361)
Q Consensus 138 ~~~~~~ 143 (361)
+.+.++
T Consensus 226 ~ll~e~ 231 (362)
T 1lbq_A 226 YNIMQK 231 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 55
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=45.82 E-value=22 Score=32.82 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=42.5
Q ss_pred ccccccccccHHHHHHHHHHHHchh-cCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 255 EHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~-~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
-++.+.|+-|.+...++ ++++|.. ..||+ |||+..|+.+..+.+++++.+.|.....
T Consensus 47 i~l~~~D~~~~~~~a~~-~~~~li~~~~v~~--iiG~~~s~~~~a~~~~~~~~~ip~i~~~ 104 (379)
T 3n0w_A 47 VKLVSADYQMKTDVALS-IAREWFDRDGVDA--IFDVVNSGTALAINNLVKDKKKLAFITA 104 (379)
T ss_dssp CEEEEEECTTCHHHHHH-HHHHHHHHSCCCE--EEECCCHHHHHHHHHHHHHHTCEEEECS
T ss_pred EEEEEeCCCCCHHHHHH-HHHHHHHhCCceE--EEcCCCcHHHHHHHHHHHHcCceEEEcC
Confidence 35678899887766655 4455543 45665 5889999999999999999998877653
No 56
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=45.74 E-value=18 Score=33.01 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=42.8
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
++.+.||-|.+..-.+. +++|. .+-.+++|+|+..|+.+.....++.+.+.|.+.-
T Consensus 50 elv~~D~~~~p~~a~~~-a~~li-~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~ 105 (353)
T 4gnr_A 50 EVVDKDNKSETAEAASV-TTNLV-TQSKVSAVVGPATSGATAAAVANATKAGVPLISP 105 (353)
T ss_dssp EEEEEECTTCHHHHHHH-HHHHH-HTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEES
T ss_pred EEEEecCCCCHHHHHHH-HHHHH-hhCCceEEeccccCcccceehhhhhccCcceEee
Confidence 56788999988877655 55665 3344567778899999999999999998886543
No 57
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=45.57 E-value=83 Score=28.35 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=48.8
Q ss_pred hHHHHHHHcCCc-ccc----------cceEEEEeCCCCCcccHHHHHHHHHHHHhhCCC--CceEEecccccCHHHHHHH
Q 018062 8 DIIKKLKENGFE-YTW----------GNVKVKLAESYGFCWGVERAVQIAYEARKQFPE--EKIWITNEIIHNPTVNKRL 74 (361)
Q Consensus 8 ~~~~~~~~~~~~-~~~----------~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~--~~Vy~lG~iIHN~~Vv~~L 74 (361)
-|+++|++.|.. +.. |--+|++.--.-++..+.+.+..+...+++... .++.+..++--+|..++.|
T Consensus 52 ~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~Pl~l~~G~~~~di~~~~~~l~~~~~~~~~i~~~~pl~~~p~~i~~l 131 (269)
T 2xvy_A 52 MIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQSLHTIPGEEFHGLLETAHAFQGLPKGLTRVSVGLPLIGTTADAEAV 131 (269)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEEECCSSSSHHHHHHHHHHHHHTTCTTSCSEEEEECCSSCSHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEEeceeeccHhHHHHHHHHHHHHHhhccCCeEEEeCCCCCCHHHHHHH
Confidence 466777766522 211 234565544433433343333222111443221 3577777888888887777
Q ss_pred HHcCcEEecCCcccccccc-ccCCCEEEEcCCCCCH
Q 018062 75 EEMAVQNIPVEEGKKQFDV-VNKGDVVVLPAFGAAV 109 (361)
Q Consensus 75 ~~~GV~~v~~~~~~~~l~e-l~~g~~VIIrAHGv~~ 109 (361)
.++=-..+ .. .++++.||+.+||.|.
T Consensus 132 a~~i~~~~---------~~~~~~~~~lll~~HGs~~ 158 (269)
T 2xvy_A 132 AEALVASL---------PADRKPGEPVVFMGHGTPH 158 (269)
T ss_dssp HHHHHHHS---------CTTCCTTCCEEEEECCCSS
T ss_pred HHHHHHhc---------hhhccCCceEEEEECCCCh
Confidence 55411111 11 1234579999999996
No 58
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=45.56 E-value=83 Score=27.61 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccc-cccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCch
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v-~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSN 295 (361)
.+|+++...+ ...-|..+.+-+++...+ .+ -++.+ .++ ....++| +.++.|.+..+|.+|+.+. .++.
T Consensus 5 ~~Ig~i~~~~-~~~~~~~~~~g~~~~~~~-~g-----~~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~-~~~~ 74 (303)
T 3d02_A 5 KTVVNISKVD-GMPWFNRMGEGVVQAGKE-FN-----LNASQVGPS--STDAPQQVKIIEDLIARKVDAITIVPN-DANV 74 (303)
T ss_dssp EEEEEECSCS-SCHHHHHHHHHHHHHHHH-TT-----EEEEEECCS--SSCHHHHHHHHHHHHHTTCSEEEECCS-CHHH
T ss_pred eEEEEEeccC-CChHHHHHHHHHHHHHHH-cC-----CEEEEECCC--CCCHHHHHHHHHHHHHcCCCEEEEecC-ChHH
Confidence 4788887543 335567777776654322 22 12222 112 2233454 3455565568999988775 3333
Q ss_pred hHHHHHHHHhcCCCeEEeCCC
Q 018062 296 TSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~ 316 (361)
...+.+.+.+.+.|...+.+.
T Consensus 75 ~~~~~~~~~~~~ipvV~~~~~ 95 (303)
T 3d02_A 75 LEPVFKKARDAGIVVLTNESP 95 (303)
T ss_dssp HHHHHHHHHHTTCEEEEESCT
T ss_pred HHHHHHHHHHCCCeEEEEecC
Confidence 345556677788999888865
No 59
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=45.53 E-value=15 Score=34.52 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=40.8
Q ss_pred ccccccccc-cHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 255 EHFISFNTI-CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 255 ~~~~v~nTI-C~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
-++.+.||- |.++.-.+ ++++|.. +-.+..|||+..|+.+..+..++.+.+.|.+.-
T Consensus 56 i~l~~~D~~~~~~~~a~~-~a~~li~-~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~ 113 (419)
T 3h5l_A 56 IELVFADTQSKGVDVVIQ-SAQRLID-RDNASALIAGYNLENGTALHDVAADAGVIAMHA 113 (419)
T ss_dssp EEEEEEECTTCCHHHHHH-HHHHHHH-TTCCSEEECSCCSSCSCHHHHHHHHHTCEEEEC
T ss_pred EEEEEccCCCCCHHHHHH-HHHHHhh-hcCCeEEEccccchhHHHhHHHHHHcCCeEEEc
Confidence 356788886 77765544 4556653 233445679999999999999999998876654
No 60
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=45.50 E-value=22 Score=32.05 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=42.1
Q ss_pred cccccccccHHHHHHHHHHHHchhc-CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~-~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++.+.||-|......+ ++++|... +||++ ||...|+.+..+.+++.+.+.|.......
T Consensus 44 ~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~i--ig~~~s~~~~~~~~~~~~~~ip~v~~~~~ 102 (362)
T 3snr_A 44 KIIVLDDGGDPTAATT-NARRFVTESKADVI--MGSSVTPPSVAISNVANEAQIPHIALAPL 102 (362)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTSCCSEE--EECSSHHHHHHHHHHHHHHTCCEEESSCC
T ss_pred EEEEecCCCCHHHHHH-HHHHHHhccCceEE--EcCCCcHHHHHHHHHHHHcCccEEEecCC
Confidence 4567788887765544 45556534 58875 47788888889999999999998776654
No 61
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=45.38 E-value=23 Score=32.28 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=42.1
Q ss_pred cccccccccHHHHHHHHHHHHchhc-CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~-~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++.+.|+-|......+ ++++|... .||++ ||...|+.+..+.+++++.+.|.......
T Consensus 64 ~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~i--ig~~~s~~~~~~~~~~~~~~ip~v~~~~~ 122 (386)
T 3sg0_A 64 TYFALDDESDPTKAAQ-NARKLLSEEKVDVL--IGSSLTPVSLPLIDIAAEAKTPLMTMAAA 122 (386)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTSCCSEE--ECCSSHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred EEEEecCCCCHHHHHH-HHHHHHhhcCceEE--ECCCCchhHHHHHHHHHhcCCeEEEecCC
Confidence 4567788887765544 45556533 47664 58888889999999999999998776553
No 62
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=45.36 E-value=74 Score=29.40 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=41.3
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcC-----CCCchhHHHHHHHHhcCCCeEEeC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGG-----WNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGG-----knSSNT~kL~eia~~~~~~t~~Ie 314 (361)
++...|+-|++.+--+.++++|. .+ .+..|+|+ ..|+.+.....++...+.|..--.
T Consensus 40 ~~~~~d~~~d~~~a~~~~~~~Li-~~-~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~ 101 (384)
T 3qek_A 40 QATSVTHRPNAIQMALSVCEDLI-SS-QVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLT 101 (384)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTG-GG-TEEEEEECC--------CCHHHHHHHHTTTCCEEESS
T ss_pred EEEEecccCCHHHHHHHHHHHHH-Hc-CceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecc
Confidence 34567899998888888888887 45 78889995 455667788899999988865433
No 63
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=45.26 E-value=51 Score=30.02 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=65.5
Q ss_pred hhHHHHHHHcCCccccc-ceEEEEe-------------CCCCCcccHHHHHHHHHHHHhh--------------CCCCce
Q 018062 7 SDIIKKLKENGFEYTWG-NVKVKLA-------------ESYGFCWGVERAVQIAYEARKQ--------------FPEEKI 58 (361)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~mkI~lA-------------~~~GFC~GV~RAI~~a~~~~~~--------------~~~~~V 58 (361)
++..++|++.|+....- .+++.-. ...+..|==.+||+...+.+.+ .++.++
T Consensus 38 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~~d~~~~l~~~~i 117 (286)
T 1jr2_A 38 DPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSV 117 (286)
T ss_dssp CHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEE
T ss_pred cHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHHHHHHHHHHHhccccccchhhHHHHhccCcE
Confidence 78899999999654432 2333321 1112223223444443332221 113579
Q ss_pred EEecccccCHHHHHHHHHcCcEEe-cCCccccccc-----c-ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 018062 59 WITNEIIHNPTVNKRLEEMAVQNI-PVEEGKKQFD-----V-VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (361)
Q Consensus 59 y~lG~iIHN~~Vv~~L~~~GV~~v-~~~~~~~~l~-----e-l~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDA 125 (361)
|+.|+ ..-+.|++.|+..+ .+....+.|- . .+....+++|+-+-.+...+.|+++|..|...
T Consensus 118 ~aVG~-----~Ta~aL~~~G~~~~~p~~~~ae~L~~~l~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~ 186 (286)
T 1jr2_A 118 YVVGN-----ATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESI 186 (286)
T ss_dssp EECSH-----HHHHHHHHTTCCCSCCSCSSHHHHHHHHHTSCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEE
T ss_pred EEECH-----HHHHHHHHcCCCcCCCCccCHHHHHHHHHhcccCCCeEEEECChhhHHHHHHHHHHCCCeeEEE
Confidence 99995 56688999999853 2111111111 1 12234678889888889999999999977443
No 64
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=45.19 E-value=1.5e+02 Score=25.67 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.... +..-|..+.+-+++...+. + -++.+.++ ....++| +.++.|.+..+|.+|+.+.. ++..
T Consensus 9 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~-~~~~ 78 (293)
T 3l6u_A 9 NIVGFTIVND-KHEFAQRLINAFKAEAKAN-K-----YEALVATS--QNSRISEREQILEFVHLKVDAIFITTLD-DVYI 78 (293)
T ss_dssp CEEEEEESCS-CSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--SSCHHHHHHHHHHHHHTTCSEEEEECSC-TTTT
T ss_pred cEEEEEEecC-CcHHHHHHHHHHHHHHHHc-C-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEecCC-hHHH
Confidence 5799988653 4556777777776643322 2 23333333 2234455 44555555789999998754 3444
Q ss_pred HHHHHHHHhcCCCeEEeCCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~e 318 (361)
..+++.+.+.+.|...+.+..+
T Consensus 79 ~~~~~~~~~~~iPvV~~~~~~~ 100 (293)
T 3l6u_A 79 GSAIEEAKKAGIPVFAIDRMIR 100 (293)
T ss_dssp HHHHHHHHHTTCCEEEESSCCC
T ss_pred HHHHHHHHHcCCCEEEecCCCC
Confidence 4566677788999999986543
No 65
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=45.14 E-value=1.1e+02 Score=25.28 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=16.3
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH
Q 018062 94 VNKGDV-VVLPAFGAAVEEMVTL 115 (361)
Q Consensus 94 l~~g~~-VIIrAHGv~~~v~~~l 115 (361)
+.++|. ++|+.-|-++++.+.+
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~ 102 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVA 102 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcHHHHHHH
Confidence 345675 5699999999887555
No 66
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=44.99 E-value=1.1e+02 Score=26.17 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++..+. +..-|..+.+-+++...+. + -++.++++ ....++|. .++.|.+..+|.+|+.+...+ +
T Consensus 3 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~- 71 (272)
T 3o74_A 3 RTLGFILPDL-ENPSYARIAKQLEQGARAR-G-----YQLLIASS--DDQPDSERQLQQLFRARRCDALFVASCLPP-E- 71 (272)
T ss_dssp CEEEEEESCT-TCHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCCCCS-S-
T ss_pred eEEEEEeCCC-cChhHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEecCccc-c-
Confidence 4788887664 4456777887777644332 2 12333332 22344553 344454578999998876422 2
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
...++.+++.+.|...+.+..
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~ 92 (272)
T 3o74_A 72 DDSYRELQDKGLPVIAIDRRL 92 (272)
T ss_dssp CCHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHcCCCEEEEccCC
Confidence 345556667899999998754
No 67
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=44.87 E-value=96 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=17.0
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHHH
Q 018062 94 VNKGDVV-VLPAFGAAVEEMVTLN 116 (361)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~~~l~ 116 (361)
+.++|.| +|+.-|-++++.+.++
T Consensus 114 ~~~~d~vI~iS~SG~t~~~~~~~~ 137 (198)
T 2xbl_A 114 GNEGDVLIGYSTSGKSPNILAAFR 137 (198)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHH
Confidence 4567764 6888899999876664
No 68
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=44.47 E-value=88 Score=27.95 Aligned_cols=109 Identities=8% Similarity=0.142 Sum_probs=62.3
Q ss_pred eEEEEeCCCCCccc--HHHHHHHHHHHHhhCCCCceEEeccc--c----cC-HHHHHHHHHcCcEEecCCcccccccccc
Q 018062 25 VKVKLAESYGFCWG--VERAVQIAYEARKQFPEEKIWITNEI--I----HN-PTVNKRLEEMAVQNIPVEEGKKQFDVVN 95 (361)
Q Consensus 25 mkI~lA~~~GFC~G--V~RAI~~a~~~~~~~~~~~Vy~lG~i--I----HN-~~Vv~~L~~~GV~~v~~~~~~~~l~el~ 95 (361)
|+++|.+..=+--+ +..|.+...+.+.. ..+|.++--= . .| ..+.+.|++.|+.++.-....+..+++.
T Consensus 1 m~llL~S~~~~~~~~~l~~~~~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~ 78 (229)
T 1fy2_A 1 MELLLLSNSTLPGKAWLEHALPLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE 78 (229)
T ss_dssp CEEEEESCSCCTTSCTTTTTHHHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH
T ss_pred CeEEEEcCCCCCCCcHHHHHHHHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh
Confidence 67777765422111 44444444455542 3455544321 1 12 3467789999987654210000114454
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEe
Q 018062 96 KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (361)
Q Consensus 96 ~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG 151 (361)
+-|.|+++- |-+....+.|++.|+ ...++++.++| ..++|
T Consensus 79 ~ad~I~lpG-G~~~~~~~~l~~~gl-------------~~~l~~~~~~G--~p~~G 118 (229)
T 1fy2_A 79 KAEIIIVGG-GNTFQLLKESRERGL-------------LAPMADRVKRG--ALYIG 118 (229)
T ss_dssp HCSEEEECC-SCHHHHHHHHHHTTC-------------HHHHHHHHHTT--CEEEE
T ss_pred cCCEEEECC-CcHHHHHHHHHHCCh-------------HHHHHHHHHcC--CEEEE
Confidence 456899999 999999999999876 34455555677 44555
No 69
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=43.34 E-value=24 Score=31.72 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=40.8
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
++.+.||-|.+.... +++++|.+.+||++ ||...|+.+..+.+++++.+.|...+.+
T Consensus 45 ~l~~~d~~~~~~~~~-~~~~~l~~~~v~~i--ig~~~s~~~~~~~~~~~~~~ip~v~~~~ 101 (346)
T 1usg_A 45 VGVEYDDACDPKQAV-AVANKIVNDGIKYV--IGHLCSSSTQPASDIYEDEGILMISPGA 101 (346)
T ss_dssp EEEEEECTTCHHHHH-HHHHHHHHTTCCEE--ECCSSHHHHHHHHHHHHHHTCEEEECCC
T ss_pred EEEEeCCCCCHHHHH-HHHHHHHhCCCCEE--EcCCCcHHHHHHHHHHHHCCCeEEeeCC
Confidence 356678877665544 45556655678886 5777788888899999999888777654
No 70
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=43.14 E-value=1.5e+02 Score=25.83 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCccccccccccccccc-HHHHHHH-HHHHHchhcCCcEEEEEcCCCCch
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC-~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSN 295 (361)
.+|+++.-...+-.-|..+.+-+++...+..+ -.+.+..+-. ....++| +.++.|.+.++|.+|+.+...++
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g-----~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~- 82 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYSD-----FNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQY- 82 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTGG-----GCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGG-
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHHh-----CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHH-
Confidence 57888876653445677777777765433201 1122222211 1234444 34455545789999998764333
Q ss_pred hHHHHHHHHhcCCCeEEeCCCC
Q 018062 296 TSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~ 317 (361)
...+++.+.+.+.|...+.+..
T Consensus 83 ~~~~~~~~~~~~iPvV~~~~~~ 104 (304)
T 3gbv_A 83 TKGFTDALNELGIPYIYIDSQI 104 (304)
T ss_dssp THHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHHHHHHHCCCeEEEEeCCC
Confidence 3455666667789999998743
No 71
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=43.02 E-value=19 Score=33.17 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=42.2
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
++.+.||-|.+...++ ++++|.. +-.+..|||+..|+.+..+.+++.+.+.|.....
T Consensus 46 ~l~~~D~~~~~~~a~~-~~~~li~-~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~ 102 (375)
T 3i09_A 46 EVVYADHQNKADIAAS-KAREWMD-RGGLDLLVGGTNSATALSMNQVAAEKKKVYINIG 102 (375)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHH-HSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECS
T ss_pred EEEEecCCCCHHHHHH-HHHHHHh-hCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeC
Confidence 5668898887766654 4555653 2345566899999999999999999998877653
No 72
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=42.96 E-value=97 Score=27.28 Aligned_cols=86 Identities=9% Similarity=0.147 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhH
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~ 297 (361)
..|+++. .++..-|.++.+-+.+...+. + -++.++++--.. +-.+.++.|.+.++|.+|+.+...+.
T Consensus 13 ~~Igvi~--~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~~~~--- 79 (289)
T 3k9c_A 13 RLLGVVF--ELQQPFHGDLVEQIYAAATRR-G-----YDVMLSAVAPSR--AEKVAVQALMRERCEAAILLGTRFDT--- 79 (289)
T ss_dssp CEEEEEE--ETTCHHHHHHHHHHHHHHHHT-T-----CEEEEEEEBTTB--CHHHHHHHHTTTTEEEEEEETCCCCH---
T ss_pred CEEEEEE--ecCCchHHHHHHHHHHHHHHC-C-----CEEEEEeCCCCH--HHHHHHHHHHhCCCCEEEEECCCCCH---
Confidence 5799998 556667888888877654332 2 123333322111 12244555555789999999876544
Q ss_pred HHHHHHHhcCCCeEEeCCCC
Q 018062 298 HLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~~ 317 (361)
...+...+ +.|...+.+..
T Consensus 80 ~~~~~~~~-~iPvV~i~~~~ 98 (289)
T 3k9c_A 80 DELGALAD-RVPALVVARAS 98 (289)
T ss_dssp HHHHHHHT-TSCEEEESSCC
T ss_pred HHHHHHHc-CCCEEEEcCCC
Confidence 33444445 89999998754
No 73
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=42.08 E-value=84 Score=28.56 Aligned_cols=96 Identities=7% Similarity=-0.018 Sum_probs=56.6
Q ss_pred eEEEEEcCC-CChHHHHHHHHHHHHHHhhhc--C-cccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCc
Q 018062 219 KVGIANQTT-MLKGETEEIGKLVEKTMMRKF--G-VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS 294 (361)
Q Consensus 219 kv~vvsQTT-~s~~~~~~I~~~l~~~~~~~~--~-~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSS 294 (361)
+|+++.=.| ....-...+..-++..+...- + .....-++.+.||-|.+.... +++++|.. +-.+..|||...|+
T Consensus 7 ~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~-~~~~~l~~-~~~v~~iig~~~s~ 84 (364)
T 3lop_A 7 SVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTV-RNVRDMAR-VDNPVALLTVVGTA 84 (364)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHH-HSCEEEEECCCCHH
T ss_pred EEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHH-HHHHHHHh-hcCcEEEEecCCCH
Confidence 788766433 333444444444433221110 0 001113566788888776554 45566653 23455678999999
Q ss_pred hhHHHHH--HHHhcCCCeEEeCCC
Q 018062 295 NTSHLQE--IAEDRGIPSYWIDSE 316 (361)
Q Consensus 295 NT~kL~e--ia~~~~~~t~~Ie~~ 316 (361)
++..+.+ ++.+.+.|.....+.
T Consensus 85 ~~~~~~~~~~~~~~~iP~v~~~~~ 108 (364)
T 3lop_A 85 NVEALMREGVLAEARLPLVGPATG 108 (364)
T ss_dssp HHHHHHHTTHHHHHTCCEESCSCC
T ss_pred HHHhhCchhhHHhcCCcEEEcccC
Confidence 9999999 999999887765543
No 74
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=41.93 E-value=64 Score=28.07 Aligned_cols=68 Identities=13% Similarity=-0.019 Sum_probs=34.6
Q ss_pred cCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC--cEEecC
Q 018062 16 NGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPV 84 (361)
Q Consensus 16 ~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~G--V~~v~~ 84 (361)
++.+..-++|+|.+.+-.=.+..-....+...+.+++.....|+.+|+|++ +.+++.|++.+ +.+|.+
T Consensus 17 ~~~~~~~m~m~i~~iSD~H~~~~~~~l~~~l~~~~~~~~~D~vi~~GDl~~-~~~l~~l~~~~~~v~~V~G 86 (215)
T 2a22_A 17 RGSSSTDFGDLVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCS-QEYVEMLKNITKNVYIVSG 86 (215)
T ss_dssp ------CCCEEEEEECCCCTTTTCSSCCGGGHHHHHCTTCCEEEECSCCCC-HHHHHHHHHHCSCEEECCC
T ss_pred CCCCccccCcEEEEEecCCCCCChHHHHHHHHHHHhcCCCCEEEECCCCCC-HHHHHHHHHcCCCEEEecC
Confidence 334444446887765433223321000111222232222246999999996 78899999987 556654
No 75
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=41.13 E-value=28 Score=28.51 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHchhcCCcEEEEEcCCCCchhH---HHHHHHHhcCCCeEEeCCCC
Q 018062 275 YKMVEEKVDLILVVGGWNSSNTS---HLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 275 ~eLa~~~vD~miVIGGknSSNT~---kL~eia~~~~~~t~~Ie~~~ 317 (361)
..| ..+|++||+-|.+|+|+. .-.+.|++.|.|-.-|.--.
T Consensus 34 ~~I--~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g 77 (111)
T 1eiw_A 34 ATP--EDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYG 77 (111)
T ss_dssp CCS--SSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSS
T ss_pred Ccc--ccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCC
Confidence 567 379999999999998876 66788889999976665533
No 76
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=40.52 E-value=1.9e+02 Score=25.39 Aligned_cols=93 Identities=10% Similarity=-0.022 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
.+|+++.-.+ +..-|..+.+-+++...+ .+ -++.+.++-=+...++| +.++.|.+..+|.+|+.+. .+...
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~-~~~~~ 75 (297)
T 3rot_A 4 DKYYLITHGS-QDPYWTSLFQGAKKAAEE-LK-----VDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP-SDTAF 75 (297)
T ss_dssp CEEEEECSCC-CSHHHHHHHHHHHHHHHH-HT-----CEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC-CSSTT
T ss_pred EEEEEEecCC-CCchHHHHHHHHHHHHHH-hC-----cEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC-CHHHH
Confidence 3788887765 455677777777664332 22 22333332100133444 4455555578999887654 44444
Q ss_pred HHHHHHHHhcCCCeEEeCCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~e 318 (361)
..+++.+.+.|.|...+.+..+
T Consensus 76 ~~~~~~~~~~giPvV~~~~~~~ 97 (297)
T 3rot_A 76 SKSLQRANKLNIPVIAVDTRPK 97 (297)
T ss_dssp HHHHHHHHHHTCCEEEESCCCS
T ss_pred HHHHHHHHHCCCCEEEEcCCCc
Confidence 6667777788999999987654
No 77
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=40.49 E-value=1.8e+02 Score=25.01 Aligned_cols=87 Identities=10% Similarity=0.178 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++... ++..-|.++.+-+++...+ .+ -++.+.+ +....++|. .++.|.+..+|.+|+.+...+
T Consensus 4 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--- 71 (275)
T 3d8u_A 4 YSIALIIPS-LFEKACAHFLPSFQQALNK-AG-----YQLLLGY--SDYSIEQEEKLLSTFLESRPAGVVLFGSEHS--- 71 (275)
T ss_dssp CEEEEEESC-SSCHHHHHHHHHHHHHHHH-TS-----CEECCEE--CTTCHHHHHHHHHHHHTSCCCCEEEESSCCC---
T ss_pred eEEEEEeCC-CccccHHHHHHHHHHHHHH-CC-----CEEEEEc--CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC---
Confidence 478888754 3445667777777664332 22 1233322 222334443 345555578999999876433
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
..+++.+++.+.|...+.+.
T Consensus 72 ~~~~~~l~~~~iPvV~~~~~ 91 (275)
T 3d8u_A 72 QRTHQLLEASNTPVLEIAEL 91 (275)
T ss_dssp HHHHHHHHHHTCCEEEESSS
T ss_pred HHHHHHHHhCCCCEEEEeec
Confidence 24455556778999988764
No 78
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=40.35 E-value=75 Score=25.50 Aligned_cols=74 Identities=15% Similarity=0.002 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCe
Q 018062 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYT 146 (361)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~-ViDATCP~V~kv~~~v~~~~~~Gy~ 146 (361)
.+.++.|+++|+.+. |++ -+-.+.....+++.|+. .+|...|...-++..++++.-+...
T Consensus 42 ~~~l~~l~~~g~~~~------------------i~T-~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~~~~~~~~~~~~~~ 102 (162)
T 2p9j_A 42 GIGIKLLQKMGITLA------------------VIS-GRDSAPLITRLKELGVEEIYTGSYKKLEIYEKIKEKYSLKDEE 102 (162)
T ss_dssp HHHHHHHHTTTCEEE------------------EEE-SCCCHHHHHHHHHTTCCEEEECC--CHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHCCCEEE------------------EEe-CCCcHHHHHHHHHcCCHhhccCCCCCHHHHHHHHHHcCCCHHH
Confidence 467788888777643 111 12245667777777875 5888888888888888877666678
Q ss_pred EEEEecCCCceeeee
Q 018062 147 SIIHGKYSHEETVAT 161 (361)
Q Consensus 147 IIIiG~~~HpEV~gi 161 (361)
++.+||.. .-+.+.
T Consensus 103 ~~~vGD~~-~Di~~a 116 (162)
T 2p9j_A 103 IGFIGDDV-VDIEVM 116 (162)
T ss_dssp EEEEECSG-GGHHHH
T ss_pred EEEECCCH-HHHHHH
Confidence 99999876 444444
No 79
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=39.90 E-value=16 Score=36.48 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=37.3
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCchh-HHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSSNT-~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
..++++++.|.+..+|+++||||-.|-.| .+|.+-+++.|.+.-.|.=+.-||.+
T Consensus 91 ~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDND 146 (419)
T 3hno_A 91 REYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDND 146 (419)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCC
Confidence 45667777776567999999999888655 58888887766333333334445544
No 80
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=39.81 E-value=22 Score=33.41 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=41.4
Q ss_pred ccccccc-----ccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 256 HFISFNT-----ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 256 ~~~v~nT-----IC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
++.+.|| -|.....-+.+.+.|....|+ .|||+..|+.|..++.++...+.|..--
T Consensus 47 ~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~--aviG~~~S~~~~av~~~~~~~~ip~is~ 107 (435)
T 1dp4_A 47 RMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPA--VFLGPGCVYSAAPVGRFTAHWRVPLLTA 107 (435)
T ss_dssp EEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCS--EEECCCSHHHHHHHHHHHHHHTCCEEES
T ss_pred EEEEecCcCcccccchhhHHHHHHHHHHhcCce--EEECCCChHHHHHHHHHHHhcCCcEEcc
Confidence 5567888 677765555565656434454 6889999999999999999999886543
No 81
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=39.71 E-value=1.4e+02 Score=26.12 Aligned_cols=90 Identities=14% Similarity=0.018 Sum_probs=50.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchhH
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTS 297 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT~ 297 (361)
.|+++... ++-.-|.++.+-+.+...+. + -++.+.++-.....++|. .++.+.+.+||.+|+.+.. +....
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~-~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKT-LSNPFWVDMKKGIEDEAKTL-G-----VSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS-SVNLV 74 (288)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSS-SSTTH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHHc-C-----CEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHHH
Confidence 57777654 44456777777776543322 1 122222211122334443 3455545689999998653 33333
Q ss_pred HHHHHHHhcCCCeEEeCCC
Q 018062 298 HLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~ 316 (361)
...+-+.+.+.|...+.+.
T Consensus 75 ~~~~~~~~~~iPvV~~~~~ 93 (288)
T 1gud_A 75 MPVARAWKKGIYLVNLDEK 93 (288)
T ss_dssp HHHHHHHHTTCEEEEESSC
T ss_pred HHHHHHHHCCCeEEEECCC
Confidence 3444556778899999864
No 82
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=39.47 E-value=63 Score=32.52 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=49.3
Q ss_pred cccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCC
Q 018062 19 EYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGD 98 (361)
Q Consensus 19 ~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~ 98 (361)
.|.+..++|.+. |.| |.=++ -+|+-+.+. +-.|... +.--.+...+.|++.|+.+..+- ..+.+..+.
T Consensus 14 ~~~~~~~~i~~i---GiG-g~Gms-~lA~~l~~~--G~~V~~s-D~~~~~~~~~~L~~~gi~~~~G~----~~~~~~~~~ 81 (524)
T 3hn7_A 14 NLYFQGMHIHIL---GIC-GTFMG-SLALLARAL--GHTVTGS-DANIYPPMSTQLEQAGVTIEEGY----LIAHLQPAP 81 (524)
T ss_dssp -----CCEEEEE---TTT-SHHHH-HHHHHHHHT--TCEEEEE-ESCCCTTHHHHHHHTTCEEEESC----CGGGGCSCC
T ss_pred ceeecCCEEEEE---Eec-HhhHH-HHHHHHHhC--CCEEEEE-CCCCCcHHHHHHHHCCCEEECCC----CHHHcCCCC
Confidence 356777888765 333 22221 023223332 3344443 22223556789999999987542 123343332
Q ss_pred EEEEcCCCCCH--HHHHHHHhcCCcEE
Q 018062 99 VVVLPAFGAAV--EEMVTLNNKNVQIV 123 (361)
Q Consensus 99 ~VIIrAHGv~~--~v~~~l~~kgl~Vi 123 (361)
-+|+.+=|+|+ ..+++|+++|+.|+
T Consensus 82 d~vV~Spgi~~~~p~l~~a~~~gi~v~ 108 (524)
T 3hn7_A 82 DLVVVGNAMKRGMDVIEYMLDTGLRYT 108 (524)
T ss_dssp SEEEECTTCCTTSHHHHHHHHHTCCEE
T ss_pred CEEEECCCcCCCCHHHHHHHHCCCcEE
Confidence 25566668885 34678889999987
No 83
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=39.45 E-value=15 Score=30.00 Aligned_cols=99 Identities=9% Similarity=-0.019 Sum_probs=57.7
Q ss_pred eEEEEeCCCCCcccH-HHHHHHHHHHHhhC--CCCceEEeccccc----CHH---HHHHHHHcCcEEecCCccccccccc
Q 018062 25 VKVKLAESYGFCWGV-ERAVQIAYEARKQF--PEEKIWITNEIIH----NPT---VNKRLEEMAVQNIPVEEGKKQFDVV 94 (361)
Q Consensus 25 mkI~lA~~~GFC~GV-~RAI~~a~~~~~~~--~~~~Vy~lG~iIH----N~~---Vv~~L~~~GV~~v~~~~~~~~l~el 94 (361)
||+.+--..|==--. ..|+..|..++++. .+-.|+..|+=++ .+. ..+.|.+.|+.+.-
T Consensus 8 ~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~L~~~~~~l~~~~~~~~~~Gv~~~a----------- 76 (117)
T 2fb6_A 8 DKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGASVKLVANDTQVQTEILEMLQSGITIEA----------- 76 (117)
T ss_dssp SEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHHHHHHCHHHHHHHHHHHHHTCEEEE-----------
T ss_pred CeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeeeeccCCccHHHHHHHHHHcCCeEEE-----------
Confidence 665444333321112 35888888888863 1337999999887 333 23444555555431
Q ss_pred cCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEE
Q 018062 95 NKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (361)
Q Consensus 95 ~~g~~VIIrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~III 149 (361)
...--..+|+.++ ++..|+.++.+- ....++.++||+||.
T Consensus 77 ---C~~Ca~~~gv~~~----l~~~gi~l~~~g--------~~l~~~v~~g~~vit 116 (117)
T 2fb6_A 77 ---CQDCCENFGVASI----ITNLGITVRYMG--------IPLTEYLKNGEKILS 116 (117)
T ss_dssp ---EHHHHHHHTCHHH----HHHTTCEEECCH--------HHHHHHHHTTCEEEE
T ss_pred ---eHHHHHHcCCcHH----HHhCCceEcCCc--------HHHHHHHHcCCEEee
Confidence 0011345777544 445688888644 345678899999875
No 84
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=39.41 E-value=1.5e+02 Score=28.41 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=33.9
Q ss_pred ccccccCCCEEEEcCC-CCCHHHHHHHHhcCCcEEeC--------cChhhHH
Q 018062 90 QFDVVNKGDVVVLPAF-GAAVEEMVTLNNKNVQIVDT--------TCPWVSK 132 (361)
Q Consensus 90 ~l~el~~g~~VIIrAH-Gv~~~v~~~l~~kgl~ViDA--------TCP~V~k 132 (361)
++..+.+|++++...| +++++..+.+.++|+++|+. ..|.+..
T Consensus 81 e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~ 132 (377)
T 2vhw_A 81 EYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAP 132 (377)
T ss_dssp GGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHH
T ss_pred HHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCc
Confidence 4556667888888887 68899999999999999955 5576653
No 85
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=38.65 E-value=1.1e+02 Score=25.27 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=21.5
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHH---HhcCCcEEeCcC
Q 018062 94 VNKGDVV-VLPAFGAAVEEMVTL---NNKNVQIVDTTC 127 (361)
Q Consensus 94 l~~g~~V-IIrAHGv~~~v~~~l---~~kgl~ViDATC 127 (361)
+.++|.| +|+.-|-++++.+.+ +++|..+|=-|+
T Consensus 108 ~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~ 145 (188)
T 1tk9_A 108 GNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSG 145 (188)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567765 588889999986555 444544443333
No 86
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=38.36 E-value=80 Score=28.61 Aligned_cols=96 Identities=20% Similarity=0.292 Sum_probs=57.5
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHHHHHHhhhcC-cccccccccccccccHHHHHHHHHHHHchh-cCCcEEEEEcCCCCc
Q 018062 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT-~s~~~~~~I~~~l~~~~~~~~~-~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~-~~vD~miVIGGknSS 294 (361)
-+|+++.-.| ....-..++..-++..+.+.-+ .....-++.+.||-|...... +++++|.. .+||+ |||...|+
T Consensus 17 i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~s~ 93 (375)
T 4evq_A 17 LKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKAT-ELTTKLIQSEKADV--LIGTVHSG 93 (375)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHH-HHHHCCCCCSCCSE--EEECSSHH
T ss_pred eEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHH-HHHHHHHhcCCceE--EEcCCccH
Confidence 4788876443 3333445555555443322110 000113556778877765443 45666753 25665 57888889
Q ss_pred hhHHHHHHHHhcCCCeEEeCCC
Q 018062 295 NTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~~ 316 (361)
.+..+.+++.+.+.|.....+.
T Consensus 94 ~~~~~~~~~~~~~iP~v~~~~~ 115 (375)
T 4evq_A 94 VAMAMVKIAREDGIPTIVPNAG 115 (375)
T ss_dssp HHHHHHHHHHHHCCCEEESSCC
T ss_pred HHHHHHHHHHHcCceEEecCCC
Confidence 9999999999999998766543
No 87
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=38.22 E-value=30 Score=32.01 Aligned_cols=57 Identities=11% Similarity=0.230 Sum_probs=41.1
Q ss_pred cccccccccHHHHHHHHHHHHchhc-CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~-~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
++.+.||-|.....+ +++++|... +||++| | ..|+.+..+.+++++.+.|.....+.
T Consensus 50 ~l~~~D~~~~~~~~~-~~~~~li~~~~V~~ii--g-~~s~~~~~~~~~~~~~~iP~i~~~~~ 107 (392)
T 3lkb_A 50 NCVVRDDQYNNANTQ-RFFEEAVDRFKIPVFL--S-YATGANLQLKPLIQELRIPTIPASMH 107 (392)
T ss_dssp EEEEEECTTCHHHHH-HHHHHHHHTTCCSCEE--E-CCHHHHHHHHHHHHHHTCCEEESCCC
T ss_pred EEEEecCCCCHHHHH-HHHHHHHhhcCcEEEE--e-CCcHHHHHHHHHHHhCCceEEecccC
Confidence 566788888776554 455566543 688765 5 67888889999999999997765443
No 88
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=37.60 E-value=1.2e+02 Score=26.48 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHhhCCCCceEEec---ccccCHHHHHHHHHcCcEEecCCccc---cccccccCCCEEE-EcCCCCCHH
Q 018062 39 VERAVQIAYE-ARKQFPEEKIWITN---EIIHNPTVNKRLEEMAVQNIPVEEGK---KQFDVVNKGDVVV-LPAFGAAVE 110 (361)
Q Consensus 39 V~RAI~~a~~-~~~~~~~~~Vy~lG---~iIHN~~Vv~~L~~~GV~~v~~~~~~---~~l~el~~g~~VI-IrAHGv~~~ 110 (361)
+++|+++..+ +++. .++||++| .-.=-.....+|...|..+.--.+.. ..+..+.++|.|| |+.-|-+++
T Consensus 44 i~~~~~~i~~~a~~~--a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~ 121 (220)
T 3etn_A 44 YEKAVELIVEQIHRK--KGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTRE 121 (220)
T ss_dssp HHHHHHHHHHHTTTT--CCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCHH
T ss_pred HHHHHHHHHhHhhcc--CCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCHH
Q ss_pred H---HHHHHh--cCCcEEeCcChhhHHHHHHH
Q 018062 111 E---MVTLNN--KNVQIVDTTCPWVSKVWTSV 137 (361)
Q Consensus 111 v---~~~l~~--kgl~ViDATCP~V~kv~~~v 137 (361)
+ .+.+++ +|..+|=-|+..-..+.+.+
T Consensus 122 ~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~a 153 (220)
T 3etn_A 122 IVELTQLAHNLNPGLKFIVITGNPDSPLASES 153 (220)
T ss_dssp HHHHHHHHHHHCTTCEEEEEESCTTSHHHHHS
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCChhHHhC
No 89
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=37.59 E-value=1.9e+02 Score=24.59 Aligned_cols=95 Identities=7% Similarity=0.045 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhCCCC--ceEEecccccCHHHHHHHHHcCcEEecCCcccccc------------ccccCCCEEEEcC
Q 018062 39 VERAVQIAYEARKQFPEE--KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF------------DVVNKGDVVVLPA 104 (361)
Q Consensus 39 V~RAI~~a~~~~~~~~~~--~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l------------~el~~g~~VIIrA 104 (361)
+++=|+.+.+++++..+. +.|..----.|+.+.+.|++.|..++.-.-+..++ ..+.+|++|++
T Consensus 77 ~~~ei~~~~~~l~~~~G~~~~~fr~P~G~~~~~~~~~~~~~G~~~v~w~~d~~Dw~~~~~~~i~~~~~~~~~g~IiL~-- 154 (195)
T 2cc0_A 77 MDSEISRTQQAIAGAGGGTPKLFRPPYGETNATLRSVEAKYGLTEVIWDVDSQDWNNASTDAIVQAVSRLGNGQVILM-- 154 (195)
T ss_dssp HHHHHHHHHHHHHHTTSCCCSEECCGGGCCCHHHHHHHHHTTCEECCCSEECCGGGTCCHHHHHHHHHTCCTTCEEEE--
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEECCCCCcCHHHHHHHHHCCCeEEEeccCCCccCCCCHHHHHHHHhCcCcCeEEEE--
Confidence 455556666666653222 35554445679999999999999987521000011 11222332222
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcChhhHHHHHHHHHHhhCCCeEEEEecC
Q 018062 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (361)
Q Consensus 105 HGv~~~v~~~l~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~ 153 (361)
|..++ .-+..+-..+..+.++||+.+-+.+.
T Consensus 155 Hd~~~------------------~t~~al~~ii~~l~~~Gy~~v~l~~~ 185 (195)
T 2cc0_A 155 HDWPA------------------NTLAAIPRIAQTLAGKGLCSGMISPQ 185 (195)
T ss_dssp ESSCH------------------HHHHHHHHHHHHHHHTTEEECEECTT
T ss_pred CCCch------------------hHHHHHHHHHHHHHHCCCEEEEeCcc
Confidence 33322 23456777888999999998877643
No 90
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=37.54 E-value=2e+02 Score=25.72 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
++|+++..++ +..-|..+.+-+++...+. + -++.+.+ -......+| +.++.|.+..+|.+|+.+. .++..
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~g~~~~~~~~-g-----~~~~~~~-~~~~d~~~q~~~i~~li~~~vdgiii~~~-~~~~~ 74 (316)
T 1tjy_A 4 ERIAFIPKLV-GVGFFTSGGNGAQEAGKAL-G-----IDVTYDG-PTEPSVSGQVQLVNNFVNQGYDAIIVSAV-SPDGL 74 (316)
T ss_dssp CEEEEECSSS-SSHHHHHHHHHHHHHHHHH-T-----CEEEECC-CSSCCHHHHHHHHHHHHHTTCSEEEECCS-SSSTT
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHHh-C-----CEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCC-CHHHH
Confidence 4788887654 4456777777776643222 2 1233221 012334444 3455555578999887654 33333
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
....+.+++.+.|...+.+.
T Consensus 75 ~~~~~~a~~~gipvV~~d~~ 94 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSD 94 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSC
T ss_pred HHHHHHHHHCcCEEEEecCC
Confidence 45566777889999888764
No 91
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=37.45 E-value=2.1e+02 Score=25.15 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
.+|+++..++ +..-|..+.+-+++...+ .+ -++.+.++ ....++| +.++.|.+..+|.+|+.+...++ .
T Consensus 3 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-~ 72 (306)
T 2vk2_A 3 LTVGFSQVGS-ESGWRAAETNVAKSEAEK-RG-----ITLKIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATG-W 72 (306)
T ss_dssp CEEEEEECCC-CSHHHHHHHHHHHHHHHH-HT-----CEEEEEEC--TTCHHHHHHHHHHHHHHTCSEEEECCSSSSS-C
T ss_pred eEEEEEeCCC-CCHHHHHHHHHHHHHHHH-cC-----CEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-H
Confidence 3788888764 334455666666553322 22 12333332 2233444 34455545689999988754332 2
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
..+.+.+.+.+.|...+.+.
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (306)
T 2vk2_A 73 EPVLKEAKDAEIPVFLLDRS 92 (306)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCCEEEecCC
Confidence 34455566778999988864
No 92
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=37.00 E-value=2.1e+02 Score=24.98 Aligned_cols=87 Identities=9% Similarity=0.044 Sum_probs=50.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH----HHHHchhcCCcEEEEEcCCCC
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD----AMYKMVEEKVDLILVVGGWNS 293 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~----A~~eLa~~~vD~miVIGGknS 293 (361)
..|+++.-. ++-.-|.++.+-+++...+. + -++.+.++- ...++|. .++.|.+.++|.+|+.+...+
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 79 (290)
T 2rgy_A 9 GIIGLFVPT-FFGSYYGTILKQTDLELRAV-H-----RHVVVATGC--GESTPREQALEAVRFLIGRDCDGVVVISHDLH 79 (290)
T ss_dssp CEEEEECSC-SCSHHHHHHHHHHHHHHHHT-T-----CEEEEECCC--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC
Confidence 478888754 34455677777776643322 2 123333221 1123333 455565578999999876543
Q ss_pred chhHHHHHHHHhcCCCeEEeCCC
Q 018062 294 SNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 294 SNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
....+.+.+.+.|...+.+.
T Consensus 80 ---~~~~~~l~~~~iPvV~~~~~ 99 (290)
T 2rgy_A 80 ---DEDLDELHRMHPKMVFLNRA 99 (290)
T ss_dssp ---HHHHHHHHHHCSSEEEESSC
T ss_pred ---HHHHHHHhhcCCCEEEEccc
Confidence 23444455678999988764
No 93
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=36.95 E-value=1.3e+02 Score=26.07 Aligned_cols=92 Identities=13% Similarity=-0.018 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCC-hHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCch
Q 018062 218 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 218 ~kv~vvsQTT~s-~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSN 295 (361)
..|+++....-. ..-|..+.+-+++...+. + -++.+.++--....++| +.++.|.+..+|.+|+.+... +.
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~~ 78 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEY-E-----IKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY-EK 78 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHH-T-----CEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT-TT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHc-C-----CEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh-HH
Confidence 478888764320 455677777776543322 2 12332222101233444 345555557899999887543 33
Q ss_pred hHHHHHHHHhcCCCeEEeCCC
Q 018062 296 TSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~ 316 (361)
....++.+.+.+.|...+.+.
T Consensus 79 ~~~~~~~~~~~~iPvV~~~~~ 99 (289)
T 3brs_A 79 TYDAAKEIKDAGIKLIVIDSG 99 (289)
T ss_dssp THHHHTTTGGGTCEEEEESSC
T ss_pred hHHHHHHHHHCCCcEEEECCC
Confidence 334455556678899888764
No 94
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=36.81 E-value=2.1e+02 Score=24.77 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.-.+ +..-|.++.+-+++...+. + -++.+.++ ....++| +.++.|.+..+|.+|+.+.. ++.+
T Consensus 6 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~~~ 75 (291)
T 3l49_A 6 KTIGITAIGT-DHDWDLKAYQAQIAEIERL-G-----GTAIALDA--GRNDQTQVSQIQTLIAQKPDAIIEQLGN-LDVL 75 (291)
T ss_dssp CEEEEEESCC-SSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHHCCSEEEEESSC-HHHH
T ss_pred cEEEEEeCCC-CChHHHHHHHHHHHHHHHc-C-----CEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hhhh
Confidence 5789887654 3455667777776643322 2 23333332 2333444 34455555789999988653 3345
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
..+++.+.+.+.|...+.+..
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~ 96 (291)
T 3l49_A 76 NPWLQKINDAGIPLFTVDTAT 96 (291)
T ss_dssp HHHHHHHHHTTCCEEEESCCC
T ss_pred HHHHHHHHHCCCcEEEecCCC
Confidence 566777778899999998754
No 95
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=36.51 E-value=2.1e+02 Score=24.73 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=54.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.... +..-|..+.+.+.+...+. + -++.++++ .....+|. .++.|.+.++|.+|+.+...
T Consensus 8 ~~Igvi~~~~-~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---- 74 (276)
T 3jy6_A 8 KLIAVIVANI-DDYFSTELFKGISSILESR-G-----YIGVLFDA--NADIEREKTLLRAIGSRGFDGLILQSFSN---- 74 (276)
T ss_dssp CEEEEEESCT-TSHHHHHHHHHHHHHHHTT-T-----CEEEEEEC--TTCHHHHHHHHHHHHTTTCSEEEEESSCC----
T ss_pred cEEEEEeCCC-CchHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCc----
Confidence 5788887654 5556778887777643322 2 12333322 22234443 34445457899999998765
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
..+++.+.+.+.|...+.+..
T Consensus 75 ~~~~~~l~~~~iPvV~i~~~~ 95 (276)
T 3jy6_A 75 PQTVQEILHQQMPVVSVDREM 95 (276)
T ss_dssp HHHHHHHHTTSSCEEEESCCC
T ss_pred HHHHHHHHHCCCCEEEEeccc
Confidence 556667778899999998754
No 96
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=36.48 E-value=16 Score=34.60 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=42.1
Q ss_pred ccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 255 ~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
-++.+.|+-|.+..-.+.+.+-+. ..-.+..|||+..|+.+.....++...+.|..--
T Consensus 58 l~l~~~D~~~~~~~a~~~a~~li~-~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~ 115 (433)
T 4f11_A 58 LDLRLYDTECDNAKGLKAFYDAIK-YGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSF 115 (433)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHH-HSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEES
T ss_pred EEEEEecCCCCHHHHHHHHHHHHh-cCCceEEEECCCcchHHHHHHHHHHhcCceEEEc
Confidence 456788998988766555444443 2223557889999999999999999998776543
No 97
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=36.30 E-value=1.8e+02 Score=26.09 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcC--CcEEEEEcCCCCc
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEK--VDLILVVGGWNSS 294 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~--vD~miVIGGknSS 294 (361)
..|+++... ++..-|..+.+-+++...+. + -++.+.++ ....++| +.++.|.+.. +|.+|+.+... +
T Consensus 6 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~-~ 75 (332)
T 2rjo_A 6 TTLACSFRS-LTNPYYTAFNKGAQSFAKSV-G-----LPYVPLTT--EGSSEKGIADIRALLQKTGGNLVLNVDPNDS-A 75 (332)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHH-T-----CCEEEEEC--TTCHHHHHHHHHHHHHHTTTCEEEEECCSSH-H
T ss_pred cEEEEEecC-CCcHHHHHHHHHHHHHHHHc-C-----CEEEEecC--CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH-H
Confidence 579988864 34455677777776643322 2 12333322 2233444 3455555567 99999876532 2
Q ss_pred hhHHHHHHHHhcCCCeEEeCCC
Q 018062 295 NTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~~ 316 (361)
....+++.+.+.+.|...+.+.
T Consensus 76 ~~~~~~~~~~~~~iPvV~~~~~ 97 (332)
T 2rjo_A 76 DARVIVEACSKAGAYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHHHHTCEEEEESCC
T ss_pred HHHHHHHHHHHCCCeEEEECCC
Confidence 2335556666778899888875
No 98
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=36.26 E-value=2.2e+02 Score=25.01 Aligned_cols=89 Identities=6% Similarity=0.103 Sum_probs=54.0
Q ss_pred ceEEEEEcCC----CChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHH-HHchhcCCcEEEEEcCCC
Q 018062 218 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWN 292 (361)
Q Consensus 218 ~kv~vvsQTT----~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~-~eLa~~~vD~miVIGGkn 292 (361)
..|+++.-.. ++-.-|..+.+-+.+...+. + -++.++++- ...++|..+ +.|.+..+|.+|+.+...
T Consensus 23 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 94 (305)
T 3huu_A 23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR-G-----YSTRMTVSE--NSGDLYHEVKTMIQSKSVDGFILLYSLK 94 (305)
T ss_dssp CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH-T-----CEEEECCCS--SHHHHHHHHHHHHHTTCCSEEEESSCBT
T ss_pred CEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCcC
Confidence 5789887652 44455777777776644332 2 123333322 233444443 344456899999987654
Q ss_pred CchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 293 SSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
+. .+.+.+++.+.|...+.+..
T Consensus 95 ~~---~~~~~l~~~~iPvV~i~~~~ 116 (305)
T 3huu_A 95 DD---PIEHLLNEFKVPYLIVGKSL 116 (305)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCC
T ss_pred Cc---HHHHHHHHcCCCEEEECCCC
Confidence 33 45566667899999998765
No 99
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=35.55 E-value=1.9e+02 Score=26.61 Aligned_cols=106 Identities=10% Similarity=0.065 Sum_probs=64.3
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEE
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVL 102 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~VII 102 (361)
.|+|-+. ..|. +|- .+|..+++. +-+|+.+. .|+...++|.+.|+.+.++ ++++ ..-| +||
T Consensus 31 ~~~I~iI-G~G~-mG~----~~a~~l~~~--G~~V~~~d---r~~~~~~~l~~~g~~~~~~------~~e~~~~aD-vVi 92 (320)
T 4dll_A 31 ARKITFL-GTGS-MGL----PMARRLCEA--GYALQVWN---RTPARAASLAALGATIHEQ------ARAAARDAD-IVV 92 (320)
T ss_dssp CSEEEEE-CCTT-THH----HHHHHHHHT--TCEEEEEC---SCHHHHHHHHTTTCEEESS------HHHHHTTCS-EEE
T ss_pred CCEEEEE-CccH-HHH----HHHHHHHhC--CCeEEEEc---CCHHHHHHHHHCCCEeeCC------HHHHHhcCC-EEE
Confidence 4676654 2232 232 344444443 34677664 5888999999999988764 3343 3345 555
Q ss_pred cCCCCCHHHHHHHH--------hcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 018062 103 PAFGAAVEEMVTLN--------NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (361)
Q Consensus 103 rAHGv~~~v~~~l~--------~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~I 147 (361)
-+=..+..+.+.+. ..|..|||.+=-.........+.+.+.|-..
T Consensus 93 ~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~ 145 (320)
T 4dll_A 93 SMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH 145 (320)
T ss_dssp ECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred EECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence 55444444444432 4688899988766666777777777777553
No 100
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=35.45 E-value=26 Score=29.39 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHchhcCCcEEEEE---cCCCCchhHHHHHHHHhcCCCeEEeC
Q 018062 275 YKMVEEKVDLILVV---GGWNSSNTSHLQEIAEDRGIPSYWID 314 (361)
Q Consensus 275 ~eLa~~~vD~miVI---GGknSSNT~kL~eia~~~~~~t~~Ie 314 (361)
..|. .+||.|+|. |...|.=-+.=.++|++.|.|.++..
T Consensus 77 ~~lL-~~CdevwV~~L~Gw~~S~Gm~~Ei~~A~~~g~pV~~~~ 118 (125)
T 1t1j_A 77 AFYM-DHLEELIVLDLPGWRDSAGIRREMEFFEAGGQRVSLWS 118 (125)
T ss_dssp HHHH-HHCSEEEECCCTTGGGCHHHHHHHHHHHHTTCEEEEHH
T ss_pred HHHH-HhCCeeEEEecCCCCCChhHHHHHHHHHHCCCcEEEEc
Confidence 4455 579999988 88889999999999999999987553
No 101
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=35.10 E-value=40 Score=27.97 Aligned_cols=76 Identities=24% Similarity=0.484 Sum_probs=46.6
Q ss_pred CCcccchhHHHHHHH-cCCcccccceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC
Q 018062 1 MNQEYTSDIIKKLKE-NGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~mkI~lA~~~GF-C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~G 78 (361)
|+++-+++|++..+. .|.++.||+.. +.|| |.|.-+. +++.. . + |.-|..-....+.|
T Consensus 1 m~~~~r~~i~~~A~~~lG~pY~~Gg~~-----~~g~DCSGlv~~---~~~~~--~-G---------i~lpr~s~~q~~~g 60 (136)
T 2jyx_A 1 MNVDVKSRIMDQYADWKGVRYRLGGST-----KKGIDCSGFVQR---TFREQ--F-G---------LELPRSTYEQQEMG 60 (136)
T ss_dssp CCCCHHHHHHHHHHHHSSCCBCTTCEE-----TTEECHHHHHHH---HHHHH--T-C---------CCCCSSHHHHGGGS
T ss_pred CCHHHHHHHHHHHHHhCCCCccCCCCC-----CCCeEHHHHHHH---HHHHh--c-C---------CCCCCCHHHHHhcC
Confidence 667777888776554 49999999864 6788 9997553 33211 1 1 11133334455555
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 018062 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (361)
Q Consensus 79 V~~v~~~~~~~~l~el~~g~~VIIrA 104 (361)
-. ++ .+++.+||.|+++.
T Consensus 61 ~~-v~-------~~~l~pGDLvff~~ 78 (136)
T 2jyx_A 61 KS-VS-------RSNLRTGDLVLFRA 78 (136)
T ss_dssp EE-CC-------TTTCCTTEEEEEEC
T ss_pred eE-cc-------hHhCCCCCEEEECC
Confidence 33 32 35677899888874
No 102
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=35.03 E-value=37 Score=26.67 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=31.9
Q ss_pred hcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEe-CCCCCCC
Q 018062 279 EEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIG 320 (361)
Q Consensus 279 ~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~I-e~~~eL~ 320 (361)
.+++-++|+-.+ -|.|+. +|-..|++.+.|.|.+ .|..||-
T Consensus 30 ~gka~lViiA~D-~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG 72 (101)
T 1w41_A 30 MGGAKLIIVARN-ARPDIKEDIEYYARLSGIPVYEFEGTSVELG 72 (101)
T ss_dssp HTCCSEEEEETT-SCHHHHHHHHHHHHHHTCCEEEESSCHHHHH
T ss_pred cCCCcEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEecCCHHHHH
Confidence 356888888888 677877 6778899999998875 7777763
No 103
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=34.95 E-value=1.6e+02 Score=25.90 Aligned_cols=87 Identities=9% Similarity=0.170 Sum_probs=53.2
Q ss_pred ceEEEEEcC---CCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHH-chhcCCcEEEEEcCCCC
Q 018062 218 VKVGIANQT---TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWNS 293 (361)
Q Consensus 218 ~kv~vvsQT---T~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~e-La~~~vD~miVIGGknS 293 (361)
..|+++.-. .++-.-|.++.+-+.+...+. + -++.+.++ .. .++|..+.+ |.+..+|.+|+.+...+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~ 77 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKR-G-----LDLLLIPD--EP-GEKYQSLIHLVETRRVDALIVAHTQPE 77 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT-T-----CEEEEEEE--CT-TCCCHHHHHHHHHTCCSEEEECSCCSS
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHC-C-----CEEEEEeC--CC-hhhHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 578888752 455566778887777644322 2 12333332 11 334444444 43458999999887654
Q ss_pred chhHHHHHHHHhcCCCeEEeCCC
Q 018062 294 SNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 294 SNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
. ...+.+.+.+.|...+.+.
T Consensus 78 ~---~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 78 D---FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp C---HHHHHHHHTTCCEEEESCC
T ss_pred h---HHHHHHHhCCCCEEEECCC
Confidence 4 4455666788999999875
No 104
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=34.89 E-value=2.4e+02 Score=24.89 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhH
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~ 297 (361)
..||++ |. ++-.-|.++++-+++.+.+. +.+...-.+.+.|+-.....+ ++.++.|.+.++|++|++|. +.+.
T Consensus 3 ~~Igvi-~~-~~~p~~~~i~~gi~~~l~~~-gy~g~~v~l~~~~~~~~~~~~-~~~~~~l~~~~vDgII~~~~---~~~~ 75 (295)
T 3lft_A 3 AKIGVL-QF-VSHPSLDLIYKGIQDGLAEE-GYKDDQVKIDFMNSEGDQSKV-ATMSKQLVANGNDLVVGIAT---PAAQ 75 (295)
T ss_dssp EEEEEE-EC-SCCHHHHHHHHHHHHHHHHT-TCCGGGEEEEEEECTTCHHHH-HHHHHHHTTSSCSEEEEESH---HHHH
T ss_pred eEEEEE-Ec-cCChhHHHHHHHHHHHHHHc-CCCCCceEEEEecCCCCHHHH-HHHHHHHHhcCCCEEEECCc---HHHH
Confidence 479988 64 55566788888777654333 110000012223333333222 24455665678999999873 2233
Q ss_pred HHHHHHHhcCCCeEEeCC
Q 018062 298 HLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 298 kL~eia~~~~~~t~~Ie~ 315 (361)
.+.+ ...+.|..++..
T Consensus 76 ~~~~--~~~~iPvV~~~~ 91 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAI 91 (295)
T ss_dssp HHHH--HCSSSCEEEESC
T ss_pred HHHH--cCCCCCEEEEec
Confidence 3332 245788888864
No 105
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=34.79 E-value=2.3e+02 Score=25.80 Aligned_cols=88 Identities=10% Similarity=0.118 Sum_probs=50.4
Q ss_pred ceEEEEEc-CCCCh-HHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCch
Q 018062 218 VKVGIANQ-TTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 218 ~kv~vvsQ-TT~s~-~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSN 295 (361)
.+|+++.- .++.- .-|..+.+-+++.. +.++ -++.+.++- .. .+..+.++.|++..+|.+|++|...+
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~-~~~g-----~~~~~~~~~-~~-~~~~~~l~~l~~~~~dgIi~~~~~~~-- 74 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFA-QENN-----AKCKYVTAS-TD-AEYVPSLSAFADENMGLVVACGSFLV-- 74 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHH-HHTT-----CEEEEEECC-SG-GGHHHHHHHHHHTTCSEEEEESTTTH--
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHH-HHhC-----CeEEEEeCC-CH-HHHHHHHHHHHHcCCCEEEECChhHH--
Confidence 47999885 23333 34556655555432 2222 123333331 22 23446678887678999999985432
Q ss_pred hHHHHHHHHhc-CCCeEEeCCC
Q 018062 296 TSHLQEIAEDR-GIPSYWIDSE 316 (361)
Q Consensus 296 T~kL~eia~~~-~~~t~~Ie~~ 316 (361)
..+.+++++. +.|..+|.+.
T Consensus 75 -~~~~~~a~~~p~~p~v~id~~ 95 (318)
T 2fqx_A 75 -EAVIETSARFPKQKFLVIDAV 95 (318)
T ss_dssp -HHHHHHHHHCTTSCEEEESSC
T ss_pred -HHHHHHHHHCCCCEEEEEcCc
Confidence 2366677654 6788888864
No 106
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=34.12 E-value=2.3e+02 Score=24.52 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
.+|+++... ++..-|.++.+-+++...+ .+ -++.+.++ .....+| +.++.|.+.++|.+|+.+... +..
T Consensus 3 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~~~ 72 (290)
T 2fn9_A 3 GKMAIVIST-LNNPWFVVLAETAKQRAEQ-LG-----YEATIFDS--QNDTAKESAHFDAIIAAGYDAIIFNPTDA-DGS 72 (290)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCT-TTT
T ss_pred eEEEEEeCC-CCChHHHHHHHHHHHHHHH-cC-----CEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEecCCh-HHH
Confidence 368888754 3445567777777654322 22 12333332 1223344 345555557899999887543 333
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
..+++.+.+.+.|...+.+.
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCeEEEEecC
Confidence 34555566788999888864
No 107
>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis} SCOP: c.6.2.8
Probab=33.46 E-value=20 Score=33.11 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=30.2
Q ss_pred cceEEE-EeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccC---HHHHHHHH
Q 018062 23 GNVKVK-LAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHN---PTVNKRLE 75 (361)
Q Consensus 23 ~~mkI~-lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN---~~Vv~~L~ 75 (361)
++|+++ -|.-+|+|.||.+||..+.+ .+.|-..+=++=- ++.++.++
T Consensus 3 ~~~~LIvnADDfGls~~vN~gI~~~~~------~G~ltstslMvn~p~~~~A~~~~k 53 (263)
T 2i5i_A 3 SNKKLIINADDFGYTPAVTQGIIEAHK------RGVVTSTTALPTSPYFLEAMESAR 53 (263)
T ss_dssp CCCEEEEEEEEETSSHHHHHHHHHHHH------SSSCCEEEECTTSTTHHHHHHHHH
T ss_pred CccEEEEEcccCCCChhHHHHHHHHHH------CCcceEeeeccCCcHHHHHHHHHH
Confidence 356654 49999999999999987644 1334444444443 34455555
No 108
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=33.36 E-value=2.3e+02 Score=25.28 Aligned_cols=89 Identities=17% Similarity=0.267 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.-+ +..-|..+.+-+.+...+..+ -++.+.++ .....+| +.++.|.+..+|.+|+.+.. ++..
T Consensus 7 ~~Igvi~~~--~~~~~~~~~~gi~~~a~~~~g-----~~l~i~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~ 76 (325)
T 2x7x_A 7 FRIGVAQCS--DDSWRHKMNDEILREAMFYNG-----VSVEIRSA--GDDNSKQAEDVHYFMDEGVDLLIISANE-AAPM 76 (325)
T ss_dssp CEEEEEESC--CSHHHHHHHHHHHHHHTTSSS-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSS-HHHH
T ss_pred eEEEEEecC--CCHHHHHHHHHHHHHHHHcCC-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-HHHH
Confidence 478888755 445566677766654321101 12333322 2223344 34555655789999988642 2222
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
..+++.+.+.+.|...+.+.
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~ 96 (325)
T 2x7x_A 77 TPIVEEAYQKGIPVILVDRK 96 (325)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCeEEEeCCC
Confidence 34556666788999988764
No 109
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=33.34 E-value=24 Score=26.92 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=31.3
Q ss_pred chhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCC
Q 018062 277 MVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 319 (361)
Q Consensus 277 La~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL 319 (361)
+-.+++-++|+-.+-...-..+|-..|++.+.|.+++.+-.||
T Consensus 23 i~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 23 LKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKL 65 (82)
T ss_dssp HTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHH
T ss_pred HHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 3335666776666665533447888999999999999987765
No 110
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=33.06 E-value=1.7e+02 Score=25.53 Aligned_cols=89 Identities=19% Similarity=0.170 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.-. ++-.-|.++.+-+++...+. + -++.++++ ....++|. .++.|.+..+|.+|+.+... .
T Consensus 9 ~~Igvv~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~ 76 (291)
T 3egc_A 9 NVVGLIVSD-IENVFFAEVASGVESEARHK-G-----YSVLLANT--AEDIVREREAVGQFFERRVDGLILAPSEG---E 76 (291)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCCSS---C
T ss_pred cEEEEEECC-CcchHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHHCCCCEEEEeCCCC---C
Confidence 579988865 44455777777776643322 2 22333332 22334443 34445457899999987654 3
Q ss_pred HHHHHHHHhcCCCeEEeCCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~e 318 (361)
..+++.+.+.+.|...+.+..+
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~ 98 (291)
T 3egc_A 77 HDYLRTELPKTFPIVAVNRELR 98 (291)
T ss_dssp CHHHHHSSCTTSCEEEESSCCC
T ss_pred hHHHHHhhccCCCEEEEecccC
Confidence 3456666678899999987654
No 111
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=33.05 E-value=20 Score=33.44 Aligned_cols=55 Identities=5% Similarity=-0.108 Sum_probs=40.0
Q ss_pred ccccccccc-HHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 256 HFISFNTIC-DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 256 ~~~v~nTIC-~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
++.+.|+-| .+..- ..++.+|... .+..|||+..|+.+.-...++.+.+.|..--
T Consensus 42 ~~~~~D~~~~d~~~a-~~~~~~l~~~--~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~ 97 (384)
T 3saj_A 42 LPQIDIVNISDSFEM-TYRFCSQFSK--GVYAIFGFYERRTVNMLTSFCGALHVCFITP 97 (384)
T ss_dssp EEEEEECCTTCHHHH-HHHHHHHHHT--TCSCEEECCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred ceeeEecccCchhhH-HHHHHHHHhc--CeEEEECCCCHHHHHHHHHHhccCCCCeEec
Confidence 456778888 44433 3455566533 5566899999999999999999999886543
No 112
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=32.81 E-value=26 Score=32.66 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=39.2
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchh-HHHHHHHHhcCCCeEE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYW 312 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT-~kL~eia~~~~~~t~~ 312 (361)
++.+.|+-|.....-..++.+|... .+..|||+..|+.| ..+..++.+.+.|..-
T Consensus 45 ~~~~~D~~~~~~~~~~~~~~~l~~~--~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is 100 (393)
T 3om0_A 45 EVDIFELQRDSQYETTDTMCQILPK--GVVSVLGPSSSPASASTVSHICGEKEIPHIK 100 (393)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHGGG--CCSCEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEEecCCCchhHHHHHHHHHHhc--CcEEEECCCCchhHHHHHHHHHhccCCCeEe
Confidence 5668899886554445566666433 35567899999776 5999999999887653
No 113
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=32.65 E-value=1.3e+02 Score=24.95 Aligned_cols=75 Identities=9% Similarity=-0.023 Sum_probs=51.3
Q ss_pred CHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCC
Q 018062 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDY 145 (361)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~-ViDATCP~V~kv~~~v~~~~~~Gy 145 (361)
+.+.++.|+++|+.++= + .| +-.+.....+++.|+. .++..+|.-.-++...+++.-.-.
T Consensus 40 ~~~~l~~L~~~G~~~~i----------~-Tg--------~~~~~~~~~~~~lgl~~~~~~~k~k~~~~~~~~~~~~~~~~ 100 (180)
T 1k1e_A 40 DGLGIKMLMDADIQVAV----------L-SG--------RDSPILRRRIADLGIKLFFLGKLEKETACFDLMKQAGVTAE 100 (180)
T ss_dssp HHHHHHHHHHTTCEEEE----------E-ES--------CCCHHHHHHHHHHTCCEEEESCSCHHHHHHHHHHHHTCCGG
T ss_pred hHHHHHHHHHCCCeEEE----------E-eC--------CCcHHHHHHHHHcCCceeecCCCCcHHHHHHHHHHcCCCHH
Confidence 55788899988887541 0 11 1234566677777875 578889988888877777755556
Q ss_pred eEEEEecCCCceeeee
Q 018062 146 TSIIHGKYSHEETVAT 161 (361)
Q Consensus 146 ~IIIiG~~~HpEV~gi 161 (361)
.++.+||.. .-+.+.
T Consensus 101 ~~~~vGD~~-~Di~~~ 115 (180)
T 1k1e_A 101 QTAYIGDDS-VDLPAF 115 (180)
T ss_dssp GEEEEECSG-GGHHHH
T ss_pred HEEEECCCH-HHHHHH
Confidence 899999886 344433
No 114
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=32.26 E-value=24 Score=36.60 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=37.1
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCch-hHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSSN-T~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
..|+++++.|-.-.+|.++||||-.|-- ..+|.+-+++.+...-.|.=+.-||.+
T Consensus 153 e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDND 208 (555)
T 2f48_A 153 EHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDAD 208 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 4577777777555799999999998844 558888887776433334334444444
No 115
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=32.16 E-value=61 Score=26.88 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=34.7
Q ss_pred chhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEeCCCCCCC
Q 018062 277 MVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 277 La~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
|-.+++-++|+-.+-.-.|+. +|-.+|++.+.|-+++.+-.+|-
T Consensus 36 i~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 36 IEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLG 80 (126)
T ss_dssp HHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHH
T ss_pred HHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 334678888888887767885 67789999999999999877763
No 116
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=32.07 E-value=2.5e+02 Score=25.17 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhC-CCC--ceEEecccccCHHHHHHHHHcCcEEec
Q 018062 40 ERAVQIAYEARKQF-PEE--KIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 40 ~RAI~~a~~~~~~~-~~~--~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
++=|+.+.+++++. +.. +.|..----.|+.+.+.|++.|..++.
T Consensus 129 ~~ei~~~~~~l~~~~G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 175 (247)
T 2j13_A 129 REELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYNVF 175 (247)
T ss_dssp HHHHHHHHHHHHHHHCCSCCCEECCGGGEECHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCHHHHHHHHHCCCEEEe
Confidence 34444455555431 112 244443345799999999999999764
No 117
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=31.81 E-value=56 Score=30.33 Aligned_cols=84 Identities=10% Similarity=0.082 Sum_probs=52.8
Q ss_pred CcccHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHHcCcEEecCC---------ccc----------ccccc
Q 018062 35 FCWGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVE---------EGK----------KQFDV 93 (361)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~-~~~Vy~lG~iI-HN~~Vv~~L~~~GV~~v~~~---------~~~----------~~l~e 93 (361)
|-.|-+.....+.++++++. ..-.|+.|..+ .||.+++++.+.|-.+-..- +.. +.+.+
T Consensus 75 fDdG~~~~~~~ll~iL~~~~v~aTfFv~g~~~~~~p~~v~~i~~~GheIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~ 154 (308)
T 3cl6_A 75 YEYGSRAGVWRILKLFKAFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTE 154 (308)
T ss_dssp HHHHHHTHHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhHHHHHHHHHHcCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEEeCCCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 34455555556666666653 23588888765 79999999999997654321 000 01122
Q ss_pred ccCCC-EEEEcCCCCCHHHHHHHHhcC
Q 018062 94 VNKGD-VVVLPAFGAAVEEMVTLNNKN 119 (361)
Q Consensus 94 l~~g~-~VIIrAHGv~~~v~~~l~~kg 119 (361)
+. |. ...+|+-..++.+.+.|++.|
T Consensus 155 ~~-G~~p~g~r~~~~~~~~~~~l~~~G 180 (308)
T 3cl6_A 155 LT-GERPLGWYTGRTGPNTRRLVMEEG 180 (308)
T ss_dssp HH-SSCCSEECCSSCCTTHHHHHHHHC
T ss_pred Hh-CCCcceEECCCCCHHHHHHHHHCC
Confidence 21 32 245777667899999999988
No 118
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=31.22 E-value=1.2e+02 Score=27.38 Aligned_cols=91 Identities=9% Similarity=-0.032 Sum_probs=56.7
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH--------
Q 018062 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL-------- 115 (361)
Q Consensus 45 ~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~VIIrAHGv~~~v~~~l-------- 115 (361)
+|...++. +-+|+.+. .|+...+.|.+.|+.+.++ ++++ ..-| +||-+=..++.+.+.+
T Consensus 16 ~a~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~~~~~~ad-vvi~~v~~~~~~~~v~~~~~~l~~ 83 (287)
T 3pdu_A 16 MAANLVRA--GFDVTVWN---RNPAKCAPLVALGARQASS------PAEVCAACD-ITIAMLADPAAAREVCFGANGVLE 83 (287)
T ss_dssp HHHHHHHH--TCCEEEEC---SSGGGGHHHHHHTCEECSC------HHHHHHHCS-EEEECCSSHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHC--CCeEEEEc---CCHHHHHHHHHCCCeecCC------HHHHHHcCC-EEEEEcCCHHHHHHHHcCchhhhh
Confidence 34444443 34677764 5888889999999987754 2333 2235 5555544444555444
Q ss_pred -HhcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 018062 116 -NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (361)
Q Consensus 116 -~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~I 147 (361)
-..|..|||.+--.........+.+.+.|...
T Consensus 84 ~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~ 116 (287)
T 3pdu_A 84 GIGGGRGYIDMSTVDDETSTAIGAAVTARGGRF 116 (287)
T ss_dssp TCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred cccCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 13577889988766666666666666777554
No 119
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=30.90 E-value=59 Score=26.68 Aligned_cols=44 Identities=18% Similarity=0.387 Sum_probs=31.2
Q ss_pred HchhcCCcEEEEEcCCCCchh--HHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 276 KMVEEKVDLILVVGGWNSSNT--SHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 276 eLa~~~vD~miVIGGknSSNT--~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
.+-.+++-++|+-++- |.|+ .+|-.+|++++.|-+++.+-.+|-
T Consensus 36 aI~~gka~LVvIA~D~-~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 36 LIENKKAKLVLIANDV-DPIELVVFLPALCKKMGVPYAIVKGKARLG 81 (113)
T ss_dssp TTTTTCCSEEEECSCC-SSHHHHTTHHHHHHHTTCCCEECSCSTTTH
T ss_pred HHHcCCceEEEEeCCC-CHHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 3433456565555444 4554 578999999999999999988774
No 120
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=30.90 E-value=2.5e+02 Score=23.90 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=16.9
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHHH
Q 018062 94 VNKGDV-VVLPAFGAAVEEMVTLN 116 (361)
Q Consensus 94 l~~g~~-VIIrAHGv~~~v~~~l~ 116 (361)
+.++|. ++|+.-|-++++.+.++
T Consensus 87 ~~~~DvvI~iS~SG~t~~~i~~~~ 110 (200)
T 1vim_A 87 ITDQDVLVGISGSGETTSVVNISK 110 (200)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHH
Confidence 445776 56999999999866553
No 121
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=30.87 E-value=39 Score=31.31 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=42.1
Q ss_pred cccccccccHHHHHHHHHHHHch-hcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 256 HFISFNTICDATQERQDAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa-~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++.+.||-|......+ ++++|. ..+||++ || ..|+.+..+.+++.+.+.|........+
T Consensus 51 ~l~~~D~~~~~~~a~~-~~~~li~~~~V~~i--iG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~ 110 (391)
T 3eaf_A 51 NYIKRDYAYNPTTAEE-YYREFRDRYGVIAI--IG-WGTADTEKLSDQVDTDKITYISASYSAK 110 (391)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTTCCSEE--EE-CCHHHHHHHHHHHHHHTCEEEESCCCGG
T ss_pred EEEEeCCCCCHHHHHH-HHHHHHhhcCcEEE--EE-cCcHHHHHHHHHHhhcCCeEEecccchh
Confidence 5678888887765544 455565 4567775 46 6788899999999999988776554433
No 122
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=30.62 E-value=2e+02 Score=25.15 Aligned_cols=88 Identities=11% Similarity=0.234 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++... ++..-|..+.+-+++...+. + -++.+.++ ....++| +.++.|.+..+|.+|+.+...+.
T Consensus 21 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-- 89 (293)
T 2iks_A 21 RSIGLVIPD-LENTSYTRIANYLERQARQR-G-----YQLLIACS--EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-- 89 (293)
T ss_dssp CEEEEEESC-SCSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSCTT--
T ss_pred cEEEEEeCC-CcCcHHHHHHHHHHHHHHHC-C-----CEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc--
Confidence 579988764 44456777777776643222 2 12333222 1223444 34555555689999998764332
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
..+++.+++.+.|...+.+.
T Consensus 90 ~~~~~~~~~~~iPvV~~~~~ 109 (293)
T 2iks_A 90 HPFYQRWANDPFPIVALDRA 109 (293)
T ss_dssp CHHHHTTTTSSSCEEEEESC
T ss_pred HHHHHHHHhCCCCEEEECCc
Confidence 23444555678899888764
No 123
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=30.55 E-value=82 Score=30.23 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=37.8
Q ss_pred ccccHHHHHHHHHHHHc-hhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCC
Q 018062 261 NTICDATQERQDAMYKM-VEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 261 nTIC~AT~~RQ~A~~eL-a~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
.|....|..-...+.++ ...+-|+++|.|+++|.-. . -.|+..+.|.+|++.-
T Consensus 73 ~~~~~~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~a-a--laA~~~~IPv~h~eag 126 (385)
T 4hwg_A 73 DNTAKSIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLS-A--IAAKRRKIPIFHMEAG 126 (385)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHCCSEEEEESCSGGGGG-H--HHHHHTTCCEEEESCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHH-H--HHHHHhCCCEEEEeCC
Confidence 45566665555555553 2457899999999998776 3 3577889999999853
No 124
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=30.20 E-value=1.7e+02 Score=25.39 Aligned_cols=91 Identities=8% Similarity=-0.052 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT 296 (361)
.+|+++.... +..-|..+.+-+++...+. + -++.++++-=....++|. .++.|.+..+|.+|+.+...++ .
T Consensus 6 ~~Igvi~~~~-~~~~~~~~~~g~~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-~ 77 (304)
T 3o1i_D 6 EKICAIYPHL-KDSYWLSVNYGMVSEAEKQ-G-----VNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHA-Y 77 (304)
T ss_dssp CEEEEEESCS-CSHHHHHHHHHHHHHHHHH-T-----CEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTS-S
T ss_pred cEEEEEeCCC-CCcHHHHHHHHHHHHHHHc-C-----CeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhH-H
Confidence 5799888754 4456777777776643322 2 223333332211333443 4444545789999988654442 2
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
....+-+. .+.|...+.+..
T Consensus 78 ~~~~~~~~-~~iPvV~~~~~~ 97 (304)
T 3o1i_D 78 EHNLKSWV-GNTPVFATVNQL 97 (304)
T ss_dssp TTTHHHHT-TTSCEEECSSCC
T ss_pred HHHHHHHc-CCCCEEEecCCC
Confidence 23344455 789999996544
No 125
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=30.03 E-value=81 Score=26.49 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=33.0
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|++.- -+|.++..+++.|++.|.++..|.+..+
T Consensus 115 ~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 115 NEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 56899998864 6778999999999999999999987644
No 126
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=29.72 E-value=37 Score=27.23 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=32.2
Q ss_pred hcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEe-CCCCCCC
Q 018062 279 EEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIG 320 (361)
Q Consensus 279 ~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~I-e~~~eL~ 320 (361)
.+++-++|+-.+- |.|+. +|-..|++.+.|.|.+ .|..||-
T Consensus 35 ~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG 77 (110)
T 3cpq_A 35 HGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSLELG 77 (110)
T ss_dssp TTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHHHHH
T ss_pred cCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHHHHH
Confidence 3568888888888 88877 6778899999998877 7777663
No 127
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=29.62 E-value=2.8e+02 Score=24.09 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.... +..-|..+.+-+++...+. +- -++.+.++ ....++|. .++.|.+..+|.+|+.+...+ ..
T Consensus 3 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g~----~~~~~~~~--~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKY-DDNFMSVVRKAIEQDAKAA-PD----VQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPA-AA 73 (309)
T ss_dssp EEEEEEESCT-TSHHHHHHHHHHHHHHHTC-TT----EEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSGG-GH
T ss_pred cEEEEEeccC-CcHHHHHHHHHHHHHHHhc-CC----eEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCcc-hh
Confidence 4788887653 4455677777776643221 10 02333322 22234443 345555578999998764332 23
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
...++.+++.+.|...+.+.
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~ 93 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSC
T ss_pred HHHHHHHHHCCCcEEEecCC
Confidence 44556666788999988874
No 128
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=29.59 E-value=55 Score=27.81 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=32.7
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
++-|++|++.- .+|.++.++++.|++.|.++..|.+..
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 150 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRD 150 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 46899998854 778999999999999999999998754
No 129
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=29.26 E-value=48 Score=27.11 Aligned_cols=42 Identities=24% Similarity=0.533 Sum_probs=31.6
Q ss_pred hcCCcEEEEEcCCCCch-hHHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 279 EEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 279 ~~~vD~miVIGGknSSN-T~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
.+++-++|+-++-.... ..+|-.+|++.+.|-+++.+-.+|-
T Consensus 34 ~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG 76 (121)
T 2lbw_A 34 KGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLG 76 (121)
T ss_dssp HSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHH
T ss_pred cCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHH
Confidence 35666766666655544 6789999999999998998877653
No 130
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=29.12 E-value=43 Score=26.42 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=31.6
Q ss_pred hcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 279 EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 279 ~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
++++-++|+-.+-...-.++|-..|+..+.|.+++.|..||-
T Consensus 33 ~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eLG 74 (101)
T 3v7q_A 33 NARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVLG 74 (101)
T ss_dssp TTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHHH
T ss_pred cCceeEEEEeccccccchhhhcccccccCCCeeeechHHHHH
Confidence 356777777666655555578888999999999998877763
No 131
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=29.05 E-value=1.5e+02 Score=25.83 Aligned_cols=88 Identities=7% Similarity=-0.039 Sum_probs=49.0
Q ss_pred ceEEEEEcCCC---ChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCC
Q 018062 218 VKVGIANQTTM---LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNS 293 (361)
Q Consensus 218 ~kv~vvsQTT~---s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknS 293 (361)
..|+++.-+.+ +..-|.++.+-+++...+. + -++.+.++ ....++| +.++.|.+..+|.+|+.+...+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 76 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-N-----YFVLPFPF--SEDRSQIDIYRDLIRSGNVDGFVLSSINYN 76 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-T-----CEEEECCC--CSSTTCCHHHHHHHHTTCCSEEEECSCCTT
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCchHHHHHHHHHHHcCCCCEEEEeecCCC
Confidence 47888865412 3345667777666543322 2 12333322 1122233 3445554568999999875443
Q ss_pred chhHHHHHHHHhcCCCeEEeCCC
Q 018062 294 SNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 294 SNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
. ..++.+.+.+.|...+.+.
T Consensus 77 ~---~~~~~l~~~~iPvV~~~~~ 96 (287)
T 3bbl_A 77 D---PRVQFLLKQKFPFVAFGRS 96 (287)
T ss_dssp C---HHHHHHHHTTCCEEEESCC
T ss_pred c---HHHHHHHhcCCCEEEECCc
Confidence 2 3445555678999999874
No 132
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=28.98 E-value=62 Score=30.96 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=29.7
Q ss_pred HHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEe
Q 018062 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (361)
Q Consensus 269 ~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~I 313 (361)
.++++++.|-+..+|.+++|||-.|-.|... ++ +.+.+...|
T Consensus 81 ~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~--l~-~~~i~vigi 122 (319)
T 4a3s_A 81 GREKGIANLKKLGIEGLVVIGGDGSYMGAKK--LT-EHGFPCVGV 122 (319)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTHHHHHHH--HH-HTTCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcHHHHHHHH--Hh-ccCCcEEEe
Confidence 5566666666567999999999888766543 23 567776555
No 133
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=28.74 E-value=2.7e+02 Score=24.66 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=21.2
Q ss_pred ceEEecccccCHHHHHHHHHcCcEEec
Q 018062 57 KIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
+.|..----.|+.+.+.|++.|..++.
T Consensus 125 ~~fr~P~G~~~~~~~~~l~~~G~~~~~ 151 (230)
T 2y8u_A 125 AYMRPPYLETNELVLQVMRDLDYRVIS 151 (230)
T ss_dssp SEECCGGGCCCHHHHHHHHHTTCEEEC
T ss_pred cEEECCCCCCCHHHHHHHHHcCCEEEE
Confidence 355544456799999999999999885
No 134
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=28.34 E-value=3e+02 Score=24.06 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=52.7
Q ss_pred ceEEEEEc----CCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHH-HHchhcCCcEEEEEcCCC
Q 018062 218 VKVGIANQ----TTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWN 292 (361)
Q Consensus 218 ~kv~vvsQ----TT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~-~eLa~~~vD~miVIGGkn 292 (361)
..|+++.- .+++-.-|.++.+-+.+...+. + -++.++++- ...++|..+ +.|.+..+|.+|+.+...
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 79 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH-G-----YGTQTTVSN--NMNDLMDEVYKMIKQRMVDAFILLYSKE 79 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT-T-----CEEEECCCC--SHHHHHHHHHHHHHTTCCSEEEESCCCT
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHC-C-----CEEEEEcCC--CChHHHHHHHHHHHhCCcCEEEEcCccc
Confidence 57888862 2334455777777776643222 2 233344332 234455444 344446899999987654
Q ss_pred CchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 293 SSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
+. .+.+.+.+.+.|...+.+..
T Consensus 80 ~~---~~~~~l~~~~iPvV~i~~~~ 101 (295)
T 3hcw_A 80 ND---PIKQMLIDESMPFIVIGKPT 101 (295)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCC
T ss_pred Ch---HHHHHHHhCCCCEEEECCCC
Confidence 32 45566667889999998753
No 135
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=28.23 E-value=36 Score=32.26 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=38.3
Q ss_pred cccccccccHHHHHHHHHHHHchhc-CCcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~-~vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
++.+.|+-|... --+.++..++.. +-.+..|||+..|+.|..++.++...+.|..-
T Consensus 57 ~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is 113 (441)
T 1jdp_A 57 QVAYEDSDCGNR-ALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLS 113 (441)
T ss_dssp EEEEEECTTSTH-HHHHHHHHHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEecCCCchh-HHHHHHHHHHhhccCCceEEECCCchhhHHHHHHHHhhcCCcEEc
Confidence 456789999875 222333333311 11356688999999999999999999888643
No 136
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=28.10 E-value=36 Score=35.11 Aligned_cols=54 Identities=6% Similarity=0.013 Sum_probs=40.1
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
++.+.|+-|.....-..++.+|... ++..|||+..|+.+.....++...+.|-.
T Consensus 35 ~~~~~D~~~~~~~~a~~~~~~l~~~--~V~aiiG~~~S~~~~a~~~i~~~~~iP~i 88 (823)
T 3kg2_A 35 TPHIDNLEVANSFAVTNAFCSQFSR--GVYAIFGFYDKKSVNTITSFCGTLHVSFI 88 (823)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred EEEEEEcCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHHHHHHHHhhcCCCcee
Confidence 4567788884444444566666533 56778999999999999999999987744
No 137
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=28.09 E-value=3.3e+02 Score=24.39 Aligned_cols=91 Identities=8% Similarity=-0.058 Sum_probs=53.6
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHHH-------
Q 018062 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTLN------- 116 (361)
Q Consensus 45 ~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~VIIrAHGv~~~v~~~l~------- 116 (361)
+|...++. +-+|+.+ -.|+...++|.+.|+...++ ++++ .+-| |||-+=..+..+.+.+.
T Consensus 18 ~a~~l~~~--G~~V~~~---d~~~~~~~~~~~~g~~~~~~------~~~~~~~aD-vvi~~vp~~~~~~~v~~~~~~~~~ 85 (302)
T 2h78_A 18 MATNLLKA--GYLLNVF---DLVQSAVDGLVAAGASAARS------ARDAVQGAD-VVISMLPASQHVEGLYLDDDGLLA 85 (302)
T ss_dssp HHHHHHHT--TCEEEEE---CSSHHHHHHHHHTTCEECSS------HHHHHTTCS-EEEECCSCHHHHHHHHHSSSCGGG
T ss_pred HHHHHHhC--CCeEEEE---cCCHHHHHHHHHCCCeEcCC------HHHHHhCCC-eEEEECCCHHHHHHHHcCchhHHh
Confidence 44444443 3467766 35889999999999988764 3333 3345 55555444445554443
Q ss_pred --hcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 018062 117 --NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (361)
Q Consensus 117 --~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~I 147 (361)
..|..|||.+=-.........+.+.+.|...
T Consensus 86 ~l~~~~~vi~~st~~~~~~~~l~~~~~~~g~~~ 118 (302)
T 2h78_A 86 HIAPGTLVLECSTIAPTSARKIHAAARERGLAM 118 (302)
T ss_dssp SSCSSCEEEECSCCCHHHHHHHHHHHHHTTCCE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 3577889964444444445555555566554
No 138
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=28.06 E-value=1.7e+02 Score=25.49 Aligned_cols=68 Identities=7% Similarity=-0.090 Sum_probs=50.7
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCeEE
Q 018062 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (361)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~-ViDATCP~V~kv~~~v~~~~~~Gy~II 148 (361)
.++.|+++|+++.= + .| .-.+.+...+++.|+. +++...|...-++...+++.-....++
T Consensus 84 ~L~~L~~~G~~l~I----------~-T~--------~~~~~~~~~l~~lgi~~~f~~~k~K~~~l~~~~~~lg~~~~~~~ 144 (211)
T 3ij5_A 84 GIRCLITSDIDVAI----------I-TG--------RRAKLLEDRANTLGITHLYQGQSDKLVAYHELLATLQCQPEQVA 144 (211)
T ss_dssp HHHHHHHTTCEEEE----------E-CS--------SCCHHHHHHHHHHTCCEEECSCSSHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE----------E-eC--------CCHHHHHHHHHHcCCchhhcccCChHHHHHHHHHHcCcCcceEE
Confidence 78899999987431 1 12 1345667778888885 688888888888888888877788999
Q ss_pred EEecCCCc
Q 018062 149 IHGKYSHE 156 (361)
Q Consensus 149 IiG~~~Hp 156 (361)
.+||..+-
T Consensus 145 ~vGDs~nD 152 (211)
T 3ij5_A 145 YIGDDLID 152 (211)
T ss_dssp EEECSGGG
T ss_pred EEcCCHHH
Confidence 99998653
No 139
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=27.97 E-value=1.6e+02 Score=23.59 Aligned_cols=86 Identities=10% Similarity=0.061 Sum_probs=54.4
Q ss_pred HHHHHcCCcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeccccc-CHH-HHHHHHHcCcEEecCCccc
Q 018062 11 KKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIH-NPT-VNKRLEEMAVQNIPVEEGK 88 (361)
Q Consensus 11 ~~~~~~~~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIH-N~~-Vv~~L~~~GV~~v~~~~~~ 88 (361)
.++-+...+...|.|.|- .|.- .. ..+..+...|.|-+ ++. ..+.+++.|-++....
T Consensus 9 ~~~~~~~~p~~~g~~~~p----~~~~-----------~~---l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sV--- 67 (109)
T 2k6g_A 9 RSYLNREGPKALGSKEIP----KGAE-----------NC---LEGLIFVITGVLESIERDEAKSLIERYGGKVTGNV--- 67 (109)
T ss_dssp HHHHTCCCCSSTTTSCCC----CCCT-----------TT---TTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSC---
T ss_pred HHhhcccCCCCCCcccCC----CCCC-----------CC---CCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcc---
Confidence 345566777777777552 2210 01 22567889999954 544 4455688899988643
Q ss_pred cccccccC-CCEEEEcCCCCCHHHHHHHHhcCCcEEe
Q 018062 89 KQFDVVNK-GDVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (361)
Q Consensus 89 ~~l~el~~-g~~VIIrAHGv~~~v~~~l~~kgl~ViD 124 (361)
.. -+.||.-. ...+.-+++|++.|+.|+|
T Consensus 68 ------SkkTd~LV~G~-~~g~sK~~kA~~lgI~Ii~ 97 (109)
T 2k6g_A 68 ------SKKTNYLVMGR-DSGQSKSDKAAALGTKIID 97 (109)
T ss_dssp ------CTTCCEEEECB-CCCHHHHHHHHHHTCEEEC
T ss_pred ------cCCceEEEECC-CCChHHHHHHHHcCCeEEe
Confidence 22 24455543 3456778899999999987
No 140
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=27.94 E-value=2.7e+02 Score=24.65 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhC-CC--CceEEecccccCHHHHHHHHHcCcEEec
Q 018062 40 ERAVQIAYEARKQF-PE--EKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 40 ~RAI~~a~~~~~~~-~~--~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
++=|+.+.+++++. +. .+.|..----.|+.+.+.|++.|..++.
T Consensus 117 ~~ei~~~~~~l~~~~G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 163 (240)
T 1ny1_A 117 QDELDSVNEEVYKITGKQDNLYLRPPRGVFSEYVLKETKRLGYQTVF 163 (240)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCEECCGGGEECHHHHHHHHHTTCEEBC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCHHHHHHHHHcCCEEEE
Confidence 33344444444431 11 2355554456899999999999999875
No 141
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=27.89 E-value=1.4e+02 Score=28.25 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=58.7
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec--CCccccccccc---cCCC
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEGKKQFDVV---NKGD 98 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~--~~~~~~~l~el---~~g~ 98 (361)
.|-.+...|.-||.|+..|++.+.+. .+..+|-+ -++|....+...+.|+..|. +-+ .+++.+. ..+.
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~---~~~~~IeV---Ev~tl~ea~eAl~aGaD~I~LDn~~-~~~l~~av~~~~~~ 242 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKL---DSNKVVEV---EVTNLDELNQAIAAKADIVMLDNFS-GEDIDIAVSIARGK 242 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHH---CTTSCEEE---EESSHHHHHHHHHTTCSEEEEESCC-HHHHHHHHHHHTTT
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhh---CCCCcEEE---EeCCHHHHHHHHHcCCCEEEEcCCC-HHHHHHHHHhhcCC
Confidence 46555678899999999999988654 23456666 57887666666667876664 210 0111111 1245
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 018062 99 VVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (361)
Q Consensus 99 ~VIIrAHGv~~~v~~~l~~kgl~ViDA 125 (361)
..+.-|=|++++....+.+-|..+|-.
T Consensus 243 v~ieaSGGIt~~~i~~~a~tGVD~Isv 269 (287)
T 3tqv_A 243 VALEVSGNIDRNSIVAIAKTGVDFISV 269 (287)
T ss_dssp CEEEEESSCCTTTHHHHHTTTCSEEEC
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 567777888888888888888877754
No 142
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=27.52 E-value=57 Score=29.80 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=25.9
Q ss_pred cCCcEEEEEcCCCCch---hHHHHHHHHhcCCCeEEeCCC
Q 018062 280 EKVDLILVVGGWNSSN---TSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 280 ~~vD~miVIGGknSSN---T~kL~eia~~~~~~t~~Ie~~ 316 (361)
.++|++||||- |-. ..+|...++..|.+.+.|.-.
T Consensus 176 ~~adlllviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~~ 213 (249)
T 1m2k_A 176 ERADVIIVAGT--SAVVQPAASLPLIVKQRGGAIIEINPD 213 (249)
T ss_dssp HHCSEEEEESC--CSCSTTGGGHHHHHHHTTCEEEEECSS
T ss_pred hcCCEEEEEcc--CCCccchHHHHHHHHHcCCeEEEEeCC
Confidence 36999999994 322 347888898888888777653
No 143
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=27.30 E-value=46 Score=26.16 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=31.0
Q ss_pred hcCCcEEEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 279 EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 279 ~~~vD~miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
.+++-++|+-.+-...-.++|-..|+..+.|.+++.|-.||-
T Consensus 32 ~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG 73 (101)
T 3on1_A 32 NGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLG 73 (101)
T ss_dssp TTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred cCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHH
Confidence 356777777766655445577788999999998888777763
No 144
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=27.24 E-value=53 Score=30.10 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=28.4
Q ss_pred HHHHHchhcCCcEEEEEcCCCCc---hhHHHHHHHHhcCCCeEEeCC
Q 018062 272 DAMYKMVEEKVDLILVVGGWNSS---NTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 272 ~A~~eLa~~~vD~miVIGGknSS---NT~kL~eia~~~~~~t~~Ie~ 315 (361)
.|.+.+ .++|++||||- |- -..+|...++..|.+...|.-
T Consensus 176 ~a~~~~--~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~iN~ 218 (253)
T 1ma3_A 176 EAIEEA--KHCDAFMVVGS--SLVVYPAAELPYIAKKAGAKMIIVNA 218 (253)
T ss_dssp HHHHHH--HHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEEES
T ss_pred HHHHHH--HhCCEEEEECC--CceeccHHHHHHHHHHcCCeEEEEeC
Confidence 344444 36999999994 42 345788889888888777764
No 145
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=27.23 E-value=2.2e+02 Score=23.82 Aligned_cols=67 Identities=9% Similarity=-0.059 Sum_probs=46.7
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcChhhHHHHHHHHHHhhCCCeEE
Q 018062 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (361)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l~~kgl~-ViDATCP~V~kv~~~v~~~~~~Gy~II 148 (361)
.++.|+++|+++.= + .| +-...+...+++.|+. +.|...|.-.-++...+++.-+...++
T Consensus 54 ~l~~L~~~g~~~~i----------~-T~--------~~~~~~~~~~~~lgl~~~f~~~~~K~~~~~~~~~~~g~~~~~~~ 114 (189)
T 3mn1_A 54 GIKMLIASGVTTAI----------I-SG--------RKTAIVERRAKSLGIEHLFQGREDKLVVLDKLLAELQLGYEQVA 114 (189)
T ss_dssp HHHHHHHTTCEEEE----------E-CS--------SCCHHHHHHHHHHTCSEEECSCSCHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE----------E-EC--------cChHHHHHHHHHcCCHHHhcCcCChHHHHHHHHHHcCCChhHEE
Confidence 78899988886541 0 12 2346677788888886 677666666666666677666678899
Q ss_pred EEecCCC
Q 018062 149 IHGKYSH 155 (361)
Q Consensus 149 IiG~~~H 155 (361)
.+||..+
T Consensus 115 ~vGD~~n 121 (189)
T 3mn1_A 115 YLGDDLP 121 (189)
T ss_dssp EEECSGG
T ss_pred EECCCHH
Confidence 9998864
No 146
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=27.20 E-value=73 Score=26.45 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=32.4
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|++.- .+|.++..+++.|++.|.++..|.+..+
T Consensus 95 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 134 (183)
T 2xhz_A 95 TPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPE 134 (183)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 46899888875 5677888999999999999999988654
No 147
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=27.04 E-value=44 Score=32.62 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCchhHHHHHHHHhcCCCeEE
Q 018062 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (361)
Q Consensus 282 vD~miVIGGknSSNT~kL~eia~~~~~~t~~ 312 (361)
-.++.|||+..|+.|..++.++...+.|..-
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is 146 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQIS 146 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEE
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEc
Confidence 3588899999999999999999999887543
No 148
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=26.98 E-value=52 Score=26.68 Aligned_cols=44 Identities=16% Similarity=0.445 Sum_probs=32.3
Q ss_pred chhcCCcEEEEEcCCCCch-hHHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 277 MVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 277 La~~~vD~miVIGGknSSN-T~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
|-.+++-++|+-.+-.... .++|-..|++.+.|.+++.|..||-
T Consensus 39 l~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG 83 (119)
T 1rlg_A 39 VERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLG 83 (119)
T ss_dssp HTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHH
Confidence 3335677776666655544 6899999999999988888877663
No 149
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=26.88 E-value=2.5e+02 Score=25.26 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.... +..-|.++.+-+.+...+ .+ -++.+.++ ....++|.. ++.|.+..+|.+|+.+...+.
T Consensus 63 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-- 131 (339)
T 3h5o_A 63 RTVLVLIPSL-ANTVFLETLTGIETVLDA-AG-----YQMLIGNS--HYDAGQELQLLRAYLQHRPDGVLITGLSHAE-- 131 (339)
T ss_dssp CEEEEEESCS-TTCTTHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCT--
T ss_pred CEEEEEeCCC-CCHHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCChHHHHHHHHHHHcCCCCEEEEeCCCCCH--
Confidence 4788887653 333466666666654322 22 12322222 223445543 444445689999999865443
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (361)
.+.+.+.+.+.|...+.+..
T Consensus 132 -~~~~~l~~~~iPvV~~~~~~ 151 (339)
T 3h5o_A 132 -PFERILSQHALPVVYMMDLA 151 (339)
T ss_dssp -THHHHHHHTTCCEEEEESCC
T ss_pred -HHHHHHhcCCCCEEEEeecC
Confidence 45566677889998886543
No 150
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=26.84 E-value=2.9e+02 Score=23.39 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCcE-EeCcChhhHHHHHHHHHHhhCCCeEEEE
Q 018062 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (361)
Q Consensus 109 ~~v~~~l~~kgl~V-iDATCP~V~kv~~~v~~~~~~Gy~IIIi 150 (361)
.+..+.+++.|+.+ +|..+|. ..-..++++.+.|-..|.+
T Consensus 93 ~~~~~~~~~~g~~~~v~~~~~~--t~~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 93 QSCIRAAKEAGKQVVVDMICVD--DLPARVRLLEEAGADMLAV 133 (211)
T ss_dssp HHHHHHHHHHTCEEEEECTTCS--SHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHHcCCCEEEE
Confidence 45677888889886 5655553 1234456666666665544
No 151
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=26.83 E-value=99 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=33.3
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|+|.- .+|.++.++++.|++.|.++..|.+..+
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 147 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899998854 7788999999999999999999988643
No 152
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=26.73 E-value=2.4e+02 Score=28.54 Aligned_cols=58 Identities=21% Similarity=0.128 Sum_probs=37.3
Q ss_pred EEEEeCCCCC----cccHHHHHHHHHHHHhh--------CCCCceEEeccccc---C-HHHHHHHHHcCcEEec
Q 018062 26 KVKLAESYGF----CWGVERAVQIAYEARKQ--------FPEEKIWITNEIIH---N-PTVNKRLEEMAVQNIP 83 (361)
Q Consensus 26 kI~lA~~~GF----C~GV~RAI~~a~~~~~~--------~~~~~Vy~lG~iIH---N-~~Vv~~L~~~GV~~v~ 83 (361)
.|+.+..-|| ..|..+|++...+.+.. .....|-++|..-. | .++..-|++.|+.++-
T Consensus 180 ~Vv~v~tpgf~Gs~~~G~~~a~~alv~~l~~~~~~~~~~~~~~~VNIig~~~~~~gD~~elkrlL~~~Gi~v~~ 253 (523)
T 3u7q_B 180 PVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSL 253 (523)
T ss_dssp CCCBCCCCTTSSCHHHHHHHHHHHHHHHHHGGGGGGCCTTTTCCEEEECCSCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEeeCCCCCCChhHHHHHHHHHHHHHhcccccccccCCCCCeEEEECCCCCChhHHHHHHHHHHHcCCeEEE
Confidence 4666777777 57888888766553321 11346999987522 1 3556667899998764
No 153
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=26.50 E-value=58 Score=29.64 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=28.5
Q ss_pred HHHHHchhcCCcEEEEEcCCCCc---hhHHHHHHHHhcCCCeEEeCC
Q 018062 272 DAMYKMVEEKVDLILVVGGWNSS---NTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 272 ~A~~eLa~~~vD~miVIGGknSS---NT~kL~eia~~~~~~t~~Ie~ 315 (361)
.|.+.+ .++|++||||- |- -..+|...++..|.+.+.|.-
T Consensus 173 ~a~~~~--~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~ 215 (246)
T 1yc5_A 173 EAIGLS--SRASLMIVLGS--SLVVYPAAELPLITVRSGGKLVIVNL 215 (246)
T ss_dssp HHHHHH--HHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEECS
T ss_pred HHHHHH--hcCCEEEEECC--CCcchhHHHHHHHHHHcCCeEEEEeC
Confidence 444444 36999999994 42 345788889888888887764
No 154
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=25.94 E-value=1.8e+02 Score=26.55 Aligned_cols=94 Identities=13% Similarity=0.000 Sum_probs=58.4
Q ss_pred HHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHHH-----
Q 018062 43 VQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTLN----- 116 (361)
Q Consensus 43 I~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~VIIrAHGv~~~v~~~l~----- 116 (361)
-.+|...++. +-+|+.+. .|+...++|.+.|+...++ ++++ ..-| |||-+=..+..+.+.+.
T Consensus 22 ~~~A~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~e~~~~aD-vVi~~vp~~~~~~~v~~~~~l~ 89 (306)
T 3l6d_A 22 TIMAQVLLKQ--GKRVAIWN---RSPGKAAALVAAGAHLCES------VKAALSASP-ATIFVLLDNHATHEVLGMPGVA 89 (306)
T ss_dssp HHHHHHHHHT--TCCEEEEC---SSHHHHHHHHHHTCEECSS------HHHHHHHSS-EEEECCSSHHHHHHHHTSTTHH
T ss_pred HHHHHHHHHC--CCEEEEEe---CCHHHHHHHHHCCCeecCC------HHHHHhcCC-EEEEEeCCHHHHHHHhcccchh
Confidence 3455555553 34677663 6888999999999987754 2333 2345 44444333333443332
Q ss_pred --hcCCcEEeCcChhhHHHHHHHHHHhhCCCeEE
Q 018062 117 --NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (361)
Q Consensus 117 --~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~II 148 (361)
..|..|||.+=-.....+...+.+.+.|-..+
T Consensus 90 ~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~v 123 (306)
T 3l6d_A 90 RALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYV 123 (306)
T ss_dssp HHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEE
T ss_pred hccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 36888999877666677777777777776543
No 155
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=25.75 E-value=1.1e+02 Score=24.45 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=48.8
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcChhhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC-CcEEEEcC
Q 018062 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVKN 173 (361)
Q Consensus 97 g~~VIIrAHGv~~~v~~~l~~kgl~V--iDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~gi~g~a-~~~ivv~~ 173 (361)
+.++|+-+=-+...+.+.|.+.|..| +|.. ...++++.+.|+. ++.|+...+++---.+.. -+.+|+..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~-------~~~~~~~~~~g~~-~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETS-------RTRVDELRERGVR-AVLGNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESC-------HHHHHHHHHTTCE-EEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHcCCC-EEECCCCCHHHHHhcCcccCCEEEEEC
Confidence 45677776556788999999998876 6764 3344556667887 488999999875333322 24666655
Q ss_pred hhhh
Q 018062 174 MKEA 177 (361)
Q Consensus 174 ~~e~ 177 (361)
+++.
T Consensus 80 ~~~~ 83 (140)
T 3fwz_A 80 PNGY 83 (140)
T ss_dssp SCHH
T ss_pred CChH
Confidence 4443
No 156
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=25.43 E-value=85 Score=30.23 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=29.2
Q ss_pred HHHchhcCCcEEEEEcCCC-CchhHHHHHHHHhcCCCeEEeCC
Q 018062 274 MYKMVEEKVDLILVVGGWN-SSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 274 ~~eLa~~~vD~miVIGGkn-SSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
+.+.+ .++|++||||..- -.=...|...+...|.+.+.|.-
T Consensus 200 a~~~~-~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~ 241 (318)
T 3k35_A 200 ADEAS-RNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNL 241 (318)
T ss_dssp HHHHH-HTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECS
T ss_pred HHHHH-hcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECC
Confidence 34444 4799999999842 22235788889899988888864
No 157
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=25.24 E-value=71 Score=29.47 Aligned_cols=96 Identities=11% Similarity=0.004 Sum_probs=54.8
Q ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhhh--cCc-ccccccccccccccHHHHHHHHHHHHchh-cCCcEEEEEcCCC
Q 018062 218 VKVGIANQTTM-LKGETEEIGKLVEKTMMRK--FGV-ENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWN 292 (361)
Q Consensus 218 ~kv~vvsQTT~-s~~~~~~I~~~l~~~~~~~--~~~-~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~-~~vD~miVIGGkn 292 (361)
.+|+++.-.|- ...-+..+..-++..+.+. .+. ....-++.+.|+-|...... +++++|.. .+||++ ||...
T Consensus 8 ~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~i--ig~~~ 84 (385)
T 1pea_A 8 PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYR-LCAEDFIRNRGVRFL--VGCYM 84 (385)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHH-HHHHHHHHTTCCCEE--EECCS
T ss_pred eEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHH-HHHHHHHhhCCcEEE--ECCCc
Confidence 47888765442 2233445555544332221 000 00111355667766654443 45666653 578886 56667
Q ss_pred CchhHHHHHHHHhcCCCeEEeCCC
Q 018062 293 SSNTSHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~~ 316 (361)
|+.+..+.+++.+.+.|.+.+...
T Consensus 85 s~~~~~~~~~~~~~~iP~v~~~~~ 108 (385)
T 1pea_A 85 SHTRKAVMPVVERADALLCYPTPY 108 (385)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSCC
T ss_pred hHHHHHHHHHHHhcCceEEECCcc
Confidence 777888899998888887776553
No 158
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=25.08 E-value=74 Score=26.57 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=32.2
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|+|.. .+|.++..+++.|++.|.++..|.+..+
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 117 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPE 117 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 46798888875 5567888999999999999999988653
No 159
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=24.97 E-value=82 Score=26.24 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=32.4
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|++.- .+|.++..+++.|++.|.++..|.+..+
T Consensus 86 ~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 86 RPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp CTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46799998855 5677888999999999999999988654
No 160
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Probab=24.90 E-value=2.5e+02 Score=25.66 Aligned_cols=90 Identities=12% Similarity=-0.068 Sum_probs=52.6
Q ss_pred CCcccHHHHHHHHHHHHhhCCC-CceEEecc----------cccCHH----HHHHHHHcCcEEecCCccccccccc-cCC
Q 018062 34 GFCWGVERAVQIAYEARKQFPE-EKIWITNE----------IIHNPT----VNKRLEEMAVQNIPVEEGKKQFDVV-NKG 97 (361)
Q Consensus 34 GFC~GV~RAI~~a~~~~~~~~~-~~Vy~lG~----------iIHN~~----Vv~~L~~~GV~~v~~~~~~~~l~el-~~g 97 (361)
+.+.+.+.+.+.+.+.++...+ -++|.-|. .--.+. +++...+.|+.+.-...+...++.. ..|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~G~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~~~g 240 (403)
T 3gnh_A 161 FNSDSPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAVRAG 240 (403)
T ss_dssp TCCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEeecCCcCCCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC
Confidence 4567888888888887775321 14665543 233443 4445567798876542221111111 124
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEE
Q 018062 98 DVVVLPAFGAAVEEMVTLNNKNVQIV 123 (361)
Q Consensus 98 ~~VIIrAHGv~~~v~~~l~~kgl~Vi 123 (361)
-..|.=...++++..+.++++|+.++
T Consensus 241 ~~~i~H~~~~~~~~~~~~~~~g~~~~ 266 (403)
T 3gnh_A 241 VDTIEHASLVDDEGIKLAVQKGAYFS 266 (403)
T ss_dssp CSEEEECTTCCHHHHHHHHHHTCEEE
T ss_pred CCEEecCCcCCHHHHHHHHHCCCEEE
Confidence 33444333458999999999999886
No 161
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=24.85 E-value=3.9e+02 Score=24.13 Aligned_cols=91 Identities=9% Similarity=-0.016 Sum_probs=56.7
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEE-ecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH------
Q 018062 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQN-IPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL------ 115 (361)
Q Consensus 44 ~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~-v~~~~~~~~l~el-~~g~~VIIrAHGv~~~v~~~l------ 115 (361)
-+|...++. +-+|+.+. .|+...+.|.+.|+.. ..+ ++++ ..-| |||-+=..+..+.+.+
T Consensus 21 ~~a~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~~------~~e~~~~aD-vvi~~vp~~~~~~~v~~~~~~l 88 (303)
T 3g0o_A 21 GAARSCLRA--GLSTWGAD---LNPQACANLLAEGACGAAAS------AREFAGVVD-ALVILVVNAAQVRQVLFGEDGV 88 (303)
T ss_dssp HHHHHHHHT--TCEEEEEC---SCHHHHHHHHHTTCSEEESS------STTTTTTCS-EEEECCSSHHHHHHHHC--CCC
T ss_pred HHHHHHHHC--CCeEEEEE---CCHHHHHHHHHcCCccccCC------HHHHHhcCC-EEEEECCCHHHHHHHHhChhhH
Confidence 345555543 34677764 6899999999999876 543 3443 3345 5555544444444443
Q ss_pred ---HhcCCcEEeCcChhhHHHHHHHHHHhhCCCe
Q 018062 116 ---NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (361)
Q Consensus 116 ---~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~ 146 (361)
...|..|||.+=..........+.+.+.|..
T Consensus 89 ~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~ 122 (303)
T 3g0o_A 89 AHLMKPGSAVMVSSTISSADAQEIAAALTALNLN 122 (303)
T ss_dssp GGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred HhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence 2357889998866666666677777677755
No 162
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=24.78 E-value=85 Score=29.19 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=39.4
Q ss_pred cCCCEEEEcCCCCCH---HHHHHHHhc--CCcE-EeCcChhhHHHHHHHHHHhhCCCeEEEEecC
Q 018062 95 NKGDVVVLPAFGAAV---EEMVTLNNK--NVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (361)
Q Consensus 95 ~~g~~VIIrAHGv~~---~v~~~l~~k--gl~V-iDATCP~V~kv~~~v~~~~~~Gy~IIIiG~~ 153 (361)
++|++|+ .||-+. .+...|.++ .+.| +|=|-|+-.- +..+.++.+.|-.+.+++|.
T Consensus 108 ~~g~~Il--T~~~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~ds 169 (276)
T 1vb5_A 108 DDGDVII--THSFSSTVLEIIRTAKERKKRFKVILTESSPDYEG-LHLARELEFSGIEFEVITDA 169 (276)
T ss_dssp CTTEEEE--CCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGG
T ss_pred cCCCEEE--EeCCChHHHHHHHHHHHcCCeEEEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHH
Confidence 4566544 255554 445555443 4444 7789999776 88999999999999999964
No 163
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=24.70 E-value=1.9e+02 Score=25.98 Aligned_cols=91 Identities=11% Similarity=-0.027 Sum_probs=57.4
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH-------
Q 018062 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL------- 115 (361)
Q Consensus 44 ~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~VIIrAHGv~~~v~~~l------- 115 (361)
.+|...++. +-+|+.+. .|+...++|.+.|+...++ ++++ ..-|.| |-+=..+..+.+.+
T Consensus 15 ~~a~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~~~~~~aDvv-i~~vp~~~~~~~v~~~~~~l~ 82 (287)
T 3pef_A 15 AMAKNLVKA--GCSVTIWN---RSPEKAEELAALGAERAAT------PCEVVESCPVT-FAMLADPAAAEEVCFGKHGVL 82 (287)
T ss_dssp HHHHHHHHT--TCEEEEEC---SSGGGGHHHHHTTCEECSS------HHHHHHHCSEE-EECCSSHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHC--CCeEEEEc---CCHHHHHHHHHCCCeecCC------HHHHHhcCCEE-EEEcCCHHHHHHHHcCcchHh
Confidence 345555543 34677653 5888899999999988764 3333 234544 44433334444433
Q ss_pred --HhcCCcEEeCcChhhHHHHHHHHHHhhCCCe
Q 018062 116 --NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (361)
Q Consensus 116 --~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~ 146 (361)
...|..|||.+--.........+.+.+.|..
T Consensus 83 ~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~ 115 (287)
T 3pef_A 83 EGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR 115 (287)
T ss_dssp HHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred hcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence 2468889999877777777777777777755
No 164
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=24.65 E-value=53 Score=26.65 Aligned_cols=42 Identities=19% Similarity=0.578 Sum_probs=31.0
Q ss_pred hcCCcEEEEEcCCCCch-hHHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 279 EEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 279 ~~~vD~miVIGGknSSN-T~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
.+++-++|+-.+-.... .++|-..|++.+.|.+++.|-.||-
T Consensus 43 ~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG 85 (120)
T 1vq8_F 43 RGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLG 85 (120)
T ss_dssp HTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHH
T ss_pred cCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHH
Confidence 35677766666655443 6899999999999988888777663
No 165
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=24.60 E-value=1.1e+02 Score=25.47 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=32.4
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (361)
++-|++|++.- -+|.++..+++.|++.|.++..|.+..
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~ 147 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG 147 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46899999865 678899999999999999999997753
No 166
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=24.37 E-value=54 Score=26.82 Aligned_cols=42 Identities=21% Similarity=0.497 Sum_probs=31.3
Q ss_pred hcCCcEEEEEcCCCCch-hHHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 279 EEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 279 ~~~vD~miVIGGknSSN-T~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
.+++-++|+-.+-.... .++|-..|++.+.|.+++.|..||-
T Consensus 42 ~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG 84 (124)
T 2fc3_A 42 RGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLG 84 (124)
T ss_dssp TTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHH
T ss_pred cCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 35677776666655444 6899999999999988888877663
No 167
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=24.16 E-value=86 Score=26.01 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=32.4
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|+|.- .+|.++.++++.|++.|.++..|.+..+
T Consensus 81 ~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 120 (180)
T 1jeo_A 81 EKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECG 120 (180)
T ss_dssp CTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 46798888875 6678899999999999999999987643
No 168
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=24.16 E-value=1.1e+02 Score=30.31 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=38.9
Q ss_pred CceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCH--HHHHHHHhcCCcEE
Q 018062 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKNVQIV 123 (361)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~--~v~~~l~~kgl~Vi 123 (361)
-.|... +.--++ ..+.|++.|+.+...- +.+.+..-| +|+-+=|+|+ ..++.++++|+.|+
T Consensus 47 ~~V~~~-D~~~~~-~~~~l~~~gi~~~~g~----~~~~~~~~d-~vV~Spgi~~~~p~~~~a~~~gi~v~ 109 (494)
T 4hv4_A 47 YQISGS-DLAPNS-VTQHLTALGAQIYFHH----RPENVLDAS-VVVVSTAISADNPEIVAAREARIPVI 109 (494)
T ss_dssp CEEEEE-CSSCCH-HHHHHHHTTCEEESSC----CGGGGTTCS-EEEECTTSCTTCHHHHHHHHTTCCEE
T ss_pred CeEEEE-ECCCCH-HHHHHHHCCCEEECCC----CHHHcCCCC-EEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 345543 333344 5688999999987542 123343335 5566668986 46778889999886
No 169
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=24.10 E-value=71 Score=31.70 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCchhHHHHHHHHhcCCCeE
Q 018062 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (361)
Q Consensus 282 vD~miVIGGknSSNT~kL~eia~~~~~~t~ 311 (361)
-.++.|||+..|+.|..++.++...+.|-.
T Consensus 116 ~~v~aviG~~~S~~s~~va~~~~~~~iP~I 145 (555)
T 2e4u_A 116 LLIAGVIGGSYSSVSIQVANLLRLFQIPQI 145 (555)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHGGGTCCEE
T ss_pred CceEEEECCCCcHHHHHHHHHHhCcCCceE
Confidence 458899999999999999999999988764
No 170
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=24.07 E-value=81 Score=25.59 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=32.3
Q ss_pred HHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEe-CCCCCCC
Q 018062 275 YKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIG 320 (361)
Q Consensus 275 ~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~I-e~~~eL~ 320 (361)
+.|-.+++-++|+-.+-. .|++ ++-..|...+.|.+++ .|-.||-
T Consensus 36 kai~~gkakLVilA~D~~-~~~~~~i~~~c~~~~ipv~~~~~s~~eLG 82 (112)
T 3iz5_f 36 KTLRSSLGKLIILANNCP-PLRKSEIETYAMLAKISVHHFHGNNVDLG 82 (112)
T ss_dssp HHHHTTCCSEEEECSCCC-HHHHHHHHHHHHHTTCCEECCCCTTCTHH
T ss_pred HHHHcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 334345677777777664 5665 6677899999999988 7777763
No 171
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=23.97 E-value=5.1e+02 Score=25.27 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=63.0
Q ss_pred HHHHHHHcCCcccccceEEEEeCCCCCcc----cHHHHHHHHHHHHhh---CCCCceEEecccccCH----HHHHHHHHc
Q 018062 9 IIKKLKENGFEYTWGNVKVKLAESYGFCW----GVERAVQIAYEARKQ---FPEEKIWITNEIIHNP----TVNKRLEEM 77 (361)
Q Consensus 9 ~~~~~~~~~~~~~~~~mkI~lA~~~GFC~----GV~RAI~~a~~~~~~---~~~~~Vy~lG~iIHN~----~Vv~~L~~~ 77 (361)
+++++++..- ...+..|+.+..-||.. |...|++...+.+.. .....|=++|.- +++ ++..-|++.
T Consensus 118 v~~~~~~~~~--~~~~~pvi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~VNilg~~-~~~~d~~eik~lL~~~ 194 (458)
T 1mio_B 118 YISQMEDAGS--IPEGKLVIHTNTPSYVGSHVTGFANMVQGIVNYLSENTGAKNGKINVIPGF-VGPADMREIKRLFEAM 194 (458)
T ss_dssp HHHHHHHTTC--SCTTCEEEEECCCTTSSCHHHHHHHHHHHHHHHHCCCCSCCCSCEEEECCS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCCCCeEEEEECCCCcccHHHHHHHHHHHHHHHHccccCCCCCcEEEECCC-CCHHHHHHHHHHHHHc
Confidence 4555554411 11247889999999984 455555444333321 112368899877 333 455566899
Q ss_pred CcEEec-----------------CCc----cccccccccCCC-EEEEcCCCCCHHHHHHHHhc-CCcEEeCcChhh
Q 018062 78 AVQNIP-----------------VEE----GKKQFDVVNKGD-VVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWV 130 (361)
Q Consensus 78 GV~~v~-----------------~~~----~~~~l~el~~g~-~VIIrAHGv~~~v~~~l~~k-gl~ViDATCP~V 130 (361)
|+.++- ..+ ..+++..+++.. ++++... .....-+.|+++ |...+....|+-
T Consensus 195 Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg~~~~ei~~~~~A~~niv~~~~-~~~~~A~~Le~~~GiP~~~~~~p~G 269 (458)
T 1mio_B 195 DIPYIMFPDTSGVLDGPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSLGSY-ASDLGAKTLEKKCKVPFKTLRTPIG 269 (458)
T ss_dssp TCCEEESSCCTTTSSCCCCSSCCSSCSCSBCHHHHHTTSSCSEEEEESHH-HHHHHHHHHHHHSCCCEEEECCCBH
T ss_pred CCcEEEeccccccccCcccCccceeCCCCCcHHHHHhhccCCEEEEEchh-hHHHHHHHHHHHhCCCEEecCCCcC
Confidence 999874 111 112233333222 2333221 124455666654 788887777774
No 172
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=23.87 E-value=98 Score=26.85 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=33.1
Q ss_pred cCCcEEEEEc-CCCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIG-GknSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
++-|++|+|. +-+|.++..+++.|++.|.++..|.+..+
T Consensus 113 ~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~ 152 (201)
T 3trj_A 113 NEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSG 152 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5789999995 46788899999999999999999987543
No 173
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=23.64 E-value=74 Score=26.22 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=22.6
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeCcChhhHHH
Q 018062 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKV 133 (361)
Q Consensus 102 IrAHGv~~~v~~~l~~kgl~ViDATCP~V~kv 133 (361)
+-+-+...+..+.++++|+.++|--|+-+...
T Consensus 99 ~~~~~~~~~l~~~a~~~Gi~~igpnc~g~~~~ 130 (138)
T 1y81_A 99 FQPGAESEEIRRFLEKAGVEYSFGRCIMVETS 130 (138)
T ss_dssp ECTTSCCHHHHHHHHHHTCEEECSCCHHHHC-
T ss_pred EcCccHHHHHHHHHHHCCCEEEcCCcceEEcc
Confidence 33344678888888888888888888776543
No 174
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=23.60 E-value=58 Score=31.29 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=30.0
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEe
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 313 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~I 313 (361)
..|+++++.|-...+|.++||||-.|-.+- +|.+ .+.+...|
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~----~~i~vvgi 123 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE----MGFPCIGL 123 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHh----hCCCEEEE
Confidence 367777777765679999999999986654 4443 46666555
No 175
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=23.37 E-value=3.5e+02 Score=23.12 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++... ++..-|..+.+-+.+...+. + -++.++++ ....++|.. ++.+.+..+|.+|+.+ .+
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~~dgiIi~~----~~- 74 (277)
T 3e61_A 9 KLIGLLLPD-MSNPFFTLIARGVEDVALAH-G-----YQVLIGNS--DNDIKKAQGYLATFVSHNCTGMISTA----FN- 74 (277)
T ss_dssp -CEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CCEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECG----GG-
T ss_pred CEEEEEECC-CCCHHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEec----CC-
Confidence 478888765 45556778887777644332 2 12333222 223344533 3444457899999987 22
Q ss_pred HHHHH-HHHhcCCCeEEeCCCC
Q 018062 297 SHLQE-IAEDRGIPSYWIDSEK 317 (361)
Q Consensus 297 ~kL~e-ia~~~~~~t~~Ie~~~ 317 (361)
...++ .+++.+.|...+.+..
T Consensus 75 ~~~~~~~l~~~~iPvV~~~~~~ 96 (277)
T 3e61_A 75 ENIIENTLTDHHIPFVFIDRIN 96 (277)
T ss_dssp HHHHHHHHHHC-CCEEEGGGCC
T ss_pred hHHHHHHHHcCCCCEEEEeccC
Confidence 33455 6667899999998764
No 176
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=23.32 E-value=96 Score=26.80 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.0
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
.+-|++|+|.- -+|.++..+++.|++.|.++..|.+..+
T Consensus 130 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~ 169 (212)
T 2i2w_A 130 REGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDG 169 (212)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46899998864 6789999999999999999999987643
No 177
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=23.21 E-value=64 Score=28.30 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=27.1
Q ss_pred EEEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCC
Q 018062 285 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPG 322 (361)
Q Consensus 285 miVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~ 322 (361)
++|+||..|.=|.-=-+++.. |.+.++|.+..-.+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e 38 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDE 38 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC----
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHH
Confidence 689999999988766667766 8788889997654443
No 178
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=22.95 E-value=3.8e+02 Score=23.83 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHH-HHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~-A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.... +..-|..+.+-+.+...+. + -++.+.++ ....++|. .++.|.+..+|.+|+.+...+.
T Consensus 61 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 129 (332)
T 2hsg_A 61 TTVGVIIPDI-SNIFYAELARGIEDIATMY-K-----YNIILSNS--DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-- 129 (332)
T ss_dssp CEEEEEEC---CCSHHHHHHHHHHHHHHHH-T-----CEEEEEEC--CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH--
T ss_pred CEEEEEeCCC-CCcHHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCChHHHHHHHHHHHhCCCcEEEEecCCCCH--
Confidence 5799887543 3345667777766543322 2 12333322 22334443 4555555689999998754432
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
...+.+.+.+.|...+.+.
T Consensus 130 -~~~~~l~~~~iPvV~~~~~ 148 (332)
T 2hsg_A 130 -EHVEELKKSPVPVVLAASI 148 (332)
T ss_dssp -HHHHHHTTSSSCEEEESCC
T ss_pred -HHHHHHHhCCCCEEEEccc
Confidence 3444455678899988874
No 179
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=22.92 E-value=59 Score=26.48 Aligned_cols=42 Identities=21% Similarity=0.522 Sum_probs=30.7
Q ss_pred hcCCcEEEEEcCCCCch-hHHHHHHHHhcCCCeEEeCCCCCCC
Q 018062 279 EEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIG 320 (361)
Q Consensus 279 ~~~vD~miVIGGknSSN-T~kL~eia~~~~~~t~~Ie~~~eL~ 320 (361)
.+++-++|+-.+-.... .++|-..|++.+.|-+++.|..||-
T Consensus 43 ~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG 85 (120)
T 1xbi_A 43 RGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLG 85 (120)
T ss_dssp HTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHH
T ss_pred cCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHH
Confidence 35666666666554443 6899999999999988888877663
No 180
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=22.89 E-value=66 Score=29.07 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=35.3
Q ss_pred cccccccccHHHHHHHHHHHHchhcCCcEEEEEcCC-CCchhHHHHHHHHhcCCCeEEeCC
Q 018062 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 256 ~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGk-nSSNT~kL~eia~~~~~~t~~Ie~ 315 (361)
++..|+.- .. +.+.+.+.+ .++|++||||.. +..-..+|...+++.|.+...|.-
T Consensus 147 ~vv~FGE~-p~---~~~~a~~~~-~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~ 202 (235)
T 1s5p_A 147 HVVWFGEM-PL---GMDEIYMAL-SMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNL 202 (235)
T ss_dssp EECCTTSC-CS---SHHHHHHHH-HHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEES
T ss_pred cEEEeCCC-HH---HHHHHHHHH-hcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEEC
Confidence 34455555 32 233344444 469999999974 222447899999888888777764
No 181
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=22.88 E-value=80 Score=27.13 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=32.6
Q ss_pred cCCcEEEEEcC-CCCchhHHHHHHHHhcCCCeEEeCCCCC
Q 018062 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (361)
Q Consensus 280 ~~vD~miVIGG-knSSNT~kL~eia~~~~~~t~~Ie~~~e 318 (361)
.+-|++|+|.. -+|.++..+++.|++.|.++..|.+..+
T Consensus 88 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 127 (200)
T 1vim_A 88 TDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRD 127 (200)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46799988875 6678888999999999999999988653
No 182
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=22.65 E-value=33 Score=32.20 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=42.0
Q ss_pred cccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHH-HhcCCCeEEeCCC
Q 018062 254 NEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIA-EDRGIPSYWIDSE 316 (361)
Q Consensus 254 ~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia-~~~~~~t~~Ie~~ 316 (361)
..++.++||-|..+ .+++++|.+. .+.+|||.-.|+++..+.+++ .+.+.|..-....
T Consensus 32 ~i~l~~~D~~~~~a---~~~~~~l~~~--~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~ 90 (325)
T 2h4a_A 32 TIPVQVFDTSMNSV---QDIIAQAKQA--GIKTLVGPLLKQNLDVILADPAQIQGMDVLALNAT 90 (325)
T ss_dssp CSCEEEEETTTSCH---HHHHHHHHHT--TCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCC
T ss_pred CceEEEEECCCChH---HHHHHHHHHC--CCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCC
Confidence 35688999999753 4555566433 455789999999999999998 6677777654443
No 183
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=22.58 E-value=1.5e+02 Score=27.76 Aligned_cols=17 Identities=24% Similarity=0.224 Sum_probs=13.4
Q ss_pred cCCcEEEEEcCCCCchh
Q 018062 280 EKVDLILVVGGWNSSNT 296 (361)
Q Consensus 280 ~~vD~miVIGGknSSNT 296 (361)
..+|+++|+||-.+=|.
T Consensus 81 ~~~d~vvv~GGDGTl~~ 97 (332)
T 2bon_A 81 FGVATVIAGGGDGTINE 97 (332)
T ss_dssp HTCSEEEEEESHHHHHH
T ss_pred cCCCEEEEEccchHHHH
Confidence 56999999999766443
No 184
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=22.34 E-value=3.7e+02 Score=26.35 Aligned_cols=91 Identities=5% Similarity=-0.067 Sum_probs=60.6
Q ss_pred CcccccceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHH-cCcEEecCCccccccccccC
Q 018062 18 FEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE-MAVQNIPVEEGKKQFDVVNK 96 (361)
Q Consensus 18 ~~~~~~~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~-~GV~~v~~~~~~~~l~el~~ 96 (361)
..+.+.+++|++. .|-+=|...+...++. +..|.+..+=++ + .++.|.+ .++..+...- ..+++.
T Consensus 6 ~~~~l~~~~vlVv------GgG~va~~k~~~L~~~--ga~V~vi~~~~~-~-~~~~l~~~~~i~~~~~~~---~~~~l~- 71 (457)
T 1pjq_A 6 IFCQLRDRDCLIV------GGGDVAERKARLLLEA--GARLTVNALTFI-P-QFTVWANEGMLTLVEGPF---DETLLD- 71 (457)
T ss_dssp EEECCBTCEEEEE------CCSHHHHHHHHHHHHT--TBEEEEEESSCC-H-HHHHHHTTTSCEEEESSC---CGGGGT-
T ss_pred eEEECCCCEEEEE------CCCHHHHHHHHHHHhC--cCEEEEEcCCCC-H-HHHHHHhcCCEEEEECCC---CccccC-
Confidence 3455668999887 5556777788777774 457888887544 3 3455543 5687776421 123343
Q ss_pred CCEEEEcCCCCC---HHHHHHHHhcCCcE
Q 018062 97 GDVVVLPAFGAA---VEEMVTLNNKNVQI 122 (361)
Q Consensus 97 g~~VIIrAHGv~---~~v~~~l~~kgl~V 122 (361)
|..+||-|-|.+ ..+.+.++++|+.|
T Consensus 72 ~~~lVi~at~~~~~n~~i~~~a~~~~i~v 100 (457)
T 1pjq_A 72 SCWLAIAATDDDTVNQRVSDAAESRRIFC 100 (457)
T ss_dssp TCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred CccEEEEcCCCHHHHHHHHHHHHHcCCEE
Confidence 545778899987 36788899999887
No 185
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=22.26 E-value=2.1e+02 Score=26.10 Aligned_cols=106 Identities=10% Similarity=-0.003 Sum_probs=64.0
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEE
Q 018062 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVL 102 (361)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~VII 102 (361)
.|+|-+. ..| ...-.+|..+++. +-+|+.+. .|+...++|.+.|+.+.++ ++++ ..-| |||
T Consensus 21 m~~I~iI-G~G-----~mG~~~A~~l~~~--G~~V~~~d---r~~~~~~~l~~~g~~~~~~------~~~~~~~aD-vvi 82 (310)
T 3doj_A 21 MMEVGFL-GLG-----IMGKAMSMNLLKN--GFKVTVWN---RTLSKCDELVEHGASVCES------PAEVIKKCK-YTI 82 (310)
T ss_dssp SCEEEEE-CCS-----HHHHHHHHHHHHT--TCEEEEEC---SSGGGGHHHHHTTCEECSS------HHHHHHHCS-EEE
T ss_pred CCEEEEE-Ccc-----HHHHHHHHHHHHC--CCeEEEEe---CCHHHHHHHHHCCCeEcCC------HHHHHHhCC-EEE
Confidence 4676654 223 2233455555553 34677664 5788899999999988754 2333 2345 555
Q ss_pred cCCCCCHHHHHHH---------HhcCCcEEeCcChhhHHHHHHHHHHhhCCCeE
Q 018062 103 PAFGAAVEEMVTL---------NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (361)
Q Consensus 103 rAHGv~~~v~~~l---------~~kgl~ViDATCP~V~kv~~~v~~~~~~Gy~I 147 (361)
-+=..+..+.+.+ ...|..|||.+=-.........+.+.+.|-..
T Consensus 83 ~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~ 136 (310)
T 3doj_A 83 AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRF 136 (310)
T ss_dssp ECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred EEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 5554455555444 13577899988666666666667776777553
No 186
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=21.96 E-value=66 Score=30.91 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=29.5
Q ss_pred HHHHHHHHHchhcCCcEEEEEcCCCCchhH-HHHHHHHhcCCCeEEe
Q 018062 268 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 313 (361)
Q Consensus 268 ~~RQ~A~~eLa~~~vD~miVIGGknSSNT~-kL~eia~~~~~~t~~I 313 (361)
..|+++++.|.....|.++||||-.|-.+- +|.+ .+.+...|
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~----~~i~vvgi 122 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTR----HGFNSIGL 122 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHH----hCCCEEEE
Confidence 467777777765679999999999886554 4443 35665554
No 187
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=21.90 E-value=4e+02 Score=23.19 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++... ++..-|..+.+-+++...+ .+ -++.+.++ ....++| +.++.|.+..+|.+|+.+...+
T Consensus 17 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--- 84 (289)
T 2fep_A 17 TTVGVIIPD-ISSIFYSELARGIEDIATM-YK-----YNIILSNS--DQNMEKELHLLNTMLGKQVDGIVFMGGNIT--- 84 (289)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCC---
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCCC---
Confidence 579988864 3445577777777664322 22 12333322 2223344 3445555578999999886433
Q ss_pred HHHHHHHHhcCCCeEEeCCC
Q 018062 297 SHLQEIAEDRGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (361)
...++-+.+.+.|...+.+.
T Consensus 85 ~~~~~~l~~~~iPvV~~~~~ 104 (289)
T 2fep_A 85 DEHVAEFKRSPVPIVLAASV 104 (289)
T ss_dssp HHHHHHHHHSSSCEEEESCC
T ss_pred HHHHHHHHhcCCCEEEEccc
Confidence 23344445778999999875
No 188
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=21.61 E-value=39 Score=30.80 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=35.4
Q ss_pred ccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHHHHHHHHhcCCCe
Q 018062 253 VNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS 310 (361)
Q Consensus 253 ~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~kL~eia~~~~~~t 310 (361)
...++.++||-+.++. .+.+.+. +-.+.+|||+..|+++..+.....+.+...
T Consensus 33 ~~i~l~~~D~~~~~~~---aa~~~~~--~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~ 85 (327)
T 3ckm_A 33 STIPVQVFDTSMNSVQ---DIIAQAK--QAGIKTLVGPLLKQNLDVILADPAQIQGMD 85 (327)
T ss_dssp CCSCEEEEETTTSCHH---HHHHHHH--HTTCCEEECCCSHHHHHHHHHCGGGGTTCE
T ss_pred CCceEEEEeCCCCHHH---HHHHHHH--HcCCeEEEEccccccchhhHHHHHhccCce
Confidence 3456889999888753 2333343 344557889999999998887665555433
No 189
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=21.41 E-value=74 Score=29.66 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=31.2
Q ss_pred EecccccCHHHHHHHHHcCcEEec-CCcc----ccccccccCCCEEEEcCCCCCH
Q 018062 60 ITNEIIHNPTVNKRLEEMAVQNIP-VEEG----KKQFDVVNKGDVVVLPAFGAAV 109 (361)
Q Consensus 60 ~lG~iIHN~~Vv~~L~~~GV~~v~-~~~~----~~~l~el~~g~~VIIrAHGv~~ 109 (361)
.-++=-.++.+.+-|++.|+..|- +.+. ......+ .++.+.+|-||-+.
T Consensus 156 ~Rh~sW~~~~~~~lL~~~~v~~V~~D~~~~~~~~P~~~~~-t~~~~yvRlHG~~~ 209 (273)
T 1vpq_A 156 FRHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPIT-TTDYAYFRFHGRNE 209 (273)
T ss_dssp CCBGGGCSHHHHHHHHHHTCEEEEEECCCCTTBCCCCCCC-SSSEEEEEECCCCT
T ss_pred ccCchhccHHHHHHHHHcCcEEEEeCCCCCCCCCCccccc-CCCceEEEEeCCCc
Confidence 334444568999999999998662 2111 1111122 36789999999765
No 190
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=21.19 E-value=1.3e+02 Score=28.29 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=29.0
Q ss_pred HHHHHchhcCCcEEEEEcCCCC-chhHHHHHHHHhcCCCeEEeCC
Q 018062 272 DAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 272 ~A~~eLa~~~vD~miVIGGknS-SNT~kL~eia~~~~~~t~~Ie~ 315 (361)
.|.+.+ .++|++||||-.-. .-...|.+.|++.|.+.+.|.-
T Consensus 209 ~a~~~~--~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~ 251 (290)
T 3u31_A 209 EAEEEI--AKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINI 251 (290)
T ss_dssp HHHHHH--HHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHH--hcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECC
Confidence 344444 36999999996322 2344788888888888887753
No 191
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=21.04 E-value=1.4e+02 Score=28.09 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=37.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCCCchhHH
Q 018062 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 298 (361)
Q Consensus 219 kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGknSSNT~k 298 (361)
|++++...+.. .+++.++|++. + -++....... ..+ +.+|++||+||-..
T Consensus 31 ki~iv~~~~~~---~~~l~~~L~~~-----g-----~~v~~~~~~~----------~~~--~~~DlvIvlGGDGT----- 80 (278)
T 1z0s_A 31 RAAVVYKTDGH---VKRIEEALKRL-----E-----VEVELFNQPS----------EEL--ENFDFIVSVGGDGT----- 80 (278)
T ss_dssp EEEEEESSSTT---HHHHHHHHHHT-----T-----CEEEEESSCC----------GGG--GGSSEEEEEECHHH-----
T ss_pred EEEEEeCCcHH---HHHHHHHHHHC-----C-----CEEEEccccc----------ccc--CCCCEEEEECCCHH-----
Confidence 68999987765 66777777651 1 1121111110 022 36999999999653
Q ss_pred HHHHHHhcC--CCeEEeC
Q 018062 299 LQEIAEDRG--IPSYWID 314 (361)
Q Consensus 299 L~eia~~~~--~~t~~Ie 314 (361)
+...++... +|.+=|.
T Consensus 81 ~L~aa~~~~~~~PilGIN 98 (278)
T 1z0s_A 81 ILRILQKLKRCPPIFGIN 98 (278)
T ss_dssp HHHHHTTCSSCCCEEEEE
T ss_pred HHHHHHHhCCCCcEEEEC
Confidence 444444432 5666664
No 192
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.85 E-value=4e+02 Score=22.84 Aligned_cols=87 Identities=26% Similarity=0.272 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHH-HHHHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ-~A~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++.-.. +..-|.++.+-+++...+. + -++.+.+ +....++| +.++.|.+..+|.+|+.+...+.
T Consensus 8 ~~Ig~i~~~~-~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-- 76 (289)
T 1dbq_A 8 KSIGLLATSS-EAAYFAEIIEAVEKNCFQK-G-----YTLILGN--AWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-- 76 (289)
T ss_dssp CEEEEEESCT-TSHHHHHHHHHHHHHHHHH-T-----CEEEEEE--CTTCHHHHHHHHHHHHHTTCSEEEEECSCCCH--
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHHc-C-----CeEEEEc--CCCChHHHHHHHHHHHhCCCCEEEEEeccCCH--
Confidence 5788887543 4455677777776643322 2 1233322 12333444 33555555789999998865432
Q ss_pred HHHHHHHHh-cCCCeEEeCCC
Q 018062 297 SHLQEIAED-RGIPSYWIDSE 316 (361)
Q Consensus 297 ~kL~eia~~-~~~~t~~Ie~~ 316 (361)
.+.+...+ .+.|...+.+.
T Consensus 77 -~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 77 -PLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp -HHHHHHHHTTTSCEEEEECS
T ss_pred -HHHHHHHhccCCCEEEEccC
Confidence 33444444 68898888764
No 193
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=20.79 E-value=1.2e+02 Score=25.59 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=46.3
Q ss_pred CceEEecccccCHHHHHHHHHcC--cEEecCCccccccccccC------CCEEEEcCCCCCHHHHHHHHhcCCcEEeCcC
Q 018062 56 EKIWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (361)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv~~L~~~G--V~~v~~~~~~~~l~el~~------g~~VIIrAHGv~~~v~~~l~~kgl~ViDATC 127 (361)
.-|+.+|+|++ +.+.+.|++.+ +.+|.++-+.. ..+|. +..-|+=.||-+.... .
T Consensus 42 d~ii~~GDl~~-~~~~~~l~~~~~~~~~v~GNhD~~--~~lp~~~~~~~~~~~i~l~Hg~~~~~~------------~-- 104 (192)
T 1z2w_A 42 QHILCTGNLCT-KESYDYLKTLAGDVHIVRGDFDEN--LNYPEQKVVTVGQFKIGLIHGHQVIPW------------G-- 104 (192)
T ss_dssp SEEEECSCCBS-HHHHHHHHHHCSEEEECCCTTCCC--TTSCSEEEEEETTEEEEEECSCCCCBT------------T--
T ss_pred CEEEEcCCCCC-HHHHHHHHhcCCCEEEEcCCcCcc--ccCCcceEEEECCEEEEEECCCcCCCC------------C--
Confidence 46999999996 78889999988 45565431110 01221 2233445687551100 0
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEEecCCCceee
Q 018062 128 PWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (361)
Q Consensus 128 P~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEV~ 159 (361)
--..+...+ .+.+..+++.|+-..|.+.
T Consensus 105 -~~~~l~~~~---~~~~~d~vi~GHtH~~~~~ 132 (192)
T 1z2w_A 105 -DMASLALLQ---RQFDVDILISGHTHKFEAF 132 (192)
T ss_dssp -CHHHHHHHH---HHHSSSEEECCSSCCCEEE
T ss_pred -CHHHHHHHH---HhcCCCEEEECCcCcCccE
Confidence 011222222 2357899999987767654
No 194
>2e67_A Hypothetical protein TTHB029; NPPSFA, national project on protein ST and functional analyses, structural genomics; 2.90A {Thermus thermophilus}
Probab=20.62 E-value=60 Score=29.93 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=19.2
Q ss_pred eEE-EEeCCCCCcccHHHHHHHH
Q 018062 25 VKV-KLAESYGFCWGVERAVQIA 46 (361)
Q Consensus 25 mkI-~lA~~~GFC~GV~RAI~~a 46 (361)
|++ +-|.-+|+|.||.+||..+
T Consensus 13 ~~LIvnADDfGls~~vN~gI~~a 35 (264)
T 2e67_A 13 RVLILHHDDLGLTHAQNGAYQAL 35 (264)
T ss_dssp EEEEEEEEEETSCHHHHHHHHHH
T ss_pred ceEEEecccCCCCHhHHHHHHHH
Confidence 554 4599999999999999988
No 195
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*
Probab=20.53 E-value=90 Score=30.15 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=26.2
Q ss_pred EEEcC--CCCCHHHHHHHHhcCCcEEeCcChh
Q 018062 100 VVLPA--FGAAVEEMVTLNNKNVQIVDTTCPW 129 (361)
Q Consensus 100 VIIrA--HGv~~~v~~~l~~kgl~ViDATCP~ 129 (361)
|+|-| ||++.+....+.+.|..|||.+=||
T Consensus 82 vvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 82 IIFSPLPQGAAGPVEEQFAKEGFPVISNSPDH 113 (359)
T ss_dssp EEEECCCTTTHHHHHHHHHHTTCEEEECSSTT
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEEcCCCc
Confidence 55554 9999999999999999999999876
No 196
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*
Probab=20.53 E-value=90 Score=30.15 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=26.2
Q ss_pred EEEcC--CCCCHHHHHHHHhcCCcEEeCcChh
Q 018062 100 VVLPA--FGAAVEEMVTLNNKNVQIVDTTCPW 129 (361)
Q Consensus 100 VIIrA--HGv~~~v~~~l~~kgl~ViDATCP~ 129 (361)
|+|-| ||++.+....+.+.|..|||.+=||
T Consensus 82 vvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 82 IIFSPLPQGAAGPVEEQFAKEGFPVISNSPDH 113 (359)
T ss_dssp EEEECCCTTTHHHHHHHHHHTTCEEEECSSTT
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEEcCCCc
Confidence 55554 9999999999999999999999876
No 197
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=20.34 E-value=1.2e+02 Score=29.06 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=41.1
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec
Q 018062 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (361)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (361)
|-.+|.+|++.+.++.+.. +.++-+.|++--+|.....|..+|+..+.
T Consensus 228 ~~p~v~~ai~~vv~aar~a-G~~vgvcge~~~dp~~~~~l~~lG~~~~s 275 (324)
T 2xz9_A 228 FHPAILRLVKMVIDAAHKE-GKFAAMCGEMAGDPLAAVILLGLGLDEFS 275 (324)
T ss_dssp TCHHHHHHHHHHHHHHHHT-TCEEEECSGGGGCHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHH-CCceeecCccCCCHHHHHHHHHCCCCEEE
Confidence 3468999999998888765 57888889998899999999999998764
No 198
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=20.31 E-value=3.2e+02 Score=25.33 Aligned_cols=106 Identities=12% Similarity=0.024 Sum_probs=62.0
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHchhcCCcEEEEEcCCC-CchhH----HHH
Q 018062 226 TTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWN-SSNTS----HLQ 300 (361)
Q Consensus 226 TT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eLa~~~vD~miVIGGkn-SSNT~----kL~ 300 (361)
.|++.+|..++++...+....+.+ .+.++-++.|.+=-+-++...+--+|+++|+--.- ..+-. +..
T Consensus 52 ~~Ls~~Er~~v~~~~~~~~~grvp--------viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~ 123 (300)
T 3eb2_A 52 AYLGTAQREAVVRATIEAAQRRVP--------VVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFR 123 (300)
T ss_dssp GGCCHHHHHHHHHHHHHHHTTSSC--------BEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhCCCCc--------EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHH
Confidence 468999999999888765433322 24466666665544444443322499999997743 23322 556
Q ss_pred HHHHhcCCCe--EEeCCC--CCCCCCCccccccccceeEEEeeec
Q 018062 301 EIAEDRGIPS--YWIDSE--KRIGPGNKIAYKLMVCVNILNFTCI 341 (361)
Q Consensus 301 eia~~~~~~t--~~Ie~~--~eL~~~~~~~~~~~~~~~~~~~~~~ 341 (361)
+||.....|. |.+-.. -+|+++ .+... .+..|++||---
T Consensus 124 ~va~a~~lPiilYn~P~~tg~~l~~~-~~~~L-a~~pnIvgiKds 166 (300)
T 3eb2_A 124 AIADAVEIPVVIYTNPQFQRSDLTLD-VIARL-AEHPRIRYIKDA 166 (300)
T ss_dssp HHHHHCSSCEEEEECTTTCSSCCCHH-HHHHH-HTSTTEEEEEEC
T ss_pred HHHHHCCCCEEEEECccccCCCCCHH-HHHHH-HcCCCEEEEEcC
Confidence 7887777776 665432 344443 22222 355678887543
No 199
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=20.18 E-value=4.3e+02 Score=22.89 Aligned_cols=89 Identities=8% Similarity=0.018 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCC-hHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHHHHHc-hhcCCcEEEEEcCCCCch
Q 018062 218 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKM-VEEKVDLILVVGGWNSSN 295 (361)
Q Consensus 218 ~kv~vvsQTT~s-~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~eL-a~~~vD~miVIGGknSSN 295 (361)
..|+++.-+.-. ..-|.++.+-+.+...+ .+ -++.+.++-- ..+.+..+.++ .+.++|.+|+.+...+.
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~~- 79 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLST-TQ-----YHLVVTPHIH--AKDSMVPIRYILETGSADGVIISKIEPND- 79 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SS-----CEEEECCBSS--GGGTTHHHHHHHHHTCCSEEEEESCCTTC-
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHHH-cC-----CEEEEecCCc--chhHHHHHHHHHHcCCccEEEEecCCCCc-
Confidence 578888764321 14577787777664322 11 2233333221 22344445443 24689999998754332
Q ss_pred hHHHHHHHHhcCCCeEEeCCCC
Q 018062 296 TSHLQEIAEDRGIPSYWIDSEK 317 (361)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~ 317 (361)
..++.+.+.+.|...+.+..
T Consensus 80 --~~~~~l~~~~iPvV~i~~~~ 99 (288)
T 3gv0_A 80 --PRVRFMTERNMPFVTHGRSD 99 (288)
T ss_dssp --HHHHHHHHTTCCEEEESCCC
T ss_pred --HHHHHHhhCCCCEEEECCcC
Confidence 44566667899999998754
No 200
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase; fructose-1,6-/sedoheptulose-1,7-bisphosphatase, hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB: 3rpl_A*
Probab=20.16 E-value=29 Score=34.35 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=33.0
Q ss_pred cCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHH
Q 018062 66 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEE 111 (361)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v 111 (361)
.|++..++.+++|+.-++ ..-.++|+-.|+.|+|-|-||++-.
T Consensus 293 ~~e~e~~r~~~mGI~D~~---rvl~~dDLv~gddviFaATGITdG~ 335 (379)
T 3roj_A 293 SREGNLERLASMGIKNPD---QVYNCEELACGETVLFAACGITPGT 335 (379)
T ss_dssp CHHHHHHHHHHTTCCCTT---CEEEHHHHTCSSSEEEEEEESSCCS
T ss_pred CCHHHHHHHHHcCCCChh---heeEHHHccCCCCEEEEEeCccCCC
Confidence 999999999999983222 2234677777877999999998653
No 201
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=20.15 E-value=1.3e+02 Score=29.41 Aligned_cols=118 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHHHHHHhhhcCcccccccccccccccHH----------HHHHHHHH-HHchhcCCcEE
Q 018062 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDA----------TQERQDAM-YKMVEEKVDLI 285 (361)
Q Consensus 218 ~kv~vvsQTT-~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~A----------T~~RQ~A~-~eLa~~~vD~m 285 (361)
++|+++.+-. ....-.+.+.+.+++ +.+|-+ ..+=+..+ +.+.+...|++
T Consensus 186 ~~V~ii~~dd~~G~~~~~~~~~~~~~------------------~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vI 247 (479)
T 3sm9_A 186 TYVSTVASEGDYGETGIEAFEQEARL------------------RNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVV 247 (479)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHT------------------TTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEE
T ss_pred eEEEEEEecchhhHHHHHHHHHHHHH------------------CCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEE
Q ss_pred EEEcCCCCchhHHHHHHHHhcCCCeEEeCCCCCCCCCCccccccccceeEEEeeecceEEEeehhhhhhe
Q 018062 286 LVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMVCVNILNFTCINRVIFKFQSFFINY 355 (361)
Q Consensus 286 iVIGGknSSNT~kL~eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (361)
++.|. ......|..-+++.|....+|-+..=-....+.....-.-.+.|||+--..-|-.|+.|+.+.
T Consensus 248 i~~~~--~~~~~~l~~~~~~~g~~~~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~ 315 (479)
T 3sm9_A 248 VLFMR--SDDSRELIAAASRANASFTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSL 315 (479)
T ss_dssp EEECC--HHHHHHHHHHHHHTTCCCEEEECTTTTTCHHHHTTCTTTTTTCEEEEECCCCCHHHHHHHHTC
T ss_pred EEEcC--hHHHHHHHHHHHHhCCEEEEEEechhhcCccccccccccCceEEEEEeccCCCcchhhHhhcc
No 202
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=20.13 E-value=1.4e+02 Score=25.87 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=53.1
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 018062 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (361)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~v~~~l 115 (361)
.+.|+.|++...+... .+.+++++ +-||+-..+|-+.|+. +++.+-. .+. -.+|.+-+-++=-++++..+.+
T Consensus 59 i~sve~ai~~~~~~~~--~~~~v~ll---~k~p~d~~~lve~Gv~-i~~iNvG-~m~-~~~gk~~i~~~v~v~~ed~~~l 130 (164)
T 1nrz_A 59 VVSLEKAVAVYHNPQY--QDETVFYL---FTNPHDVLTMVRQGVQ-IATLNIG-GMA-WRPGKKQLTKAVSLDPQDIQAF 130 (164)
T ss_dssp EECHHHHHHHHTCGGG--TTCEEEEE---ESSHHHHHHHHTTTCC-CSEEEEE-EBC-CCTTCEEEETTEEECHHHHHHH
T ss_pred EEEHHHHHHHHhcccC--CCceEEEE---ECCHHHHHHHHHcCCC-CCEEEEC-CCc-CCCCCeEEeccEeeCHHHHHHH
Confidence 4788898887765432 34678875 7899999999999996 4332100 111 1357777888888888875554
Q ss_pred ---HhcCCcEE
Q 018062 116 ---NNKNVQIV 123 (361)
Q Consensus 116 ---~~kgl~Vi 123 (361)
.++|+++.
T Consensus 131 k~L~~~Gv~v~ 141 (164)
T 1nrz_A 131 RELDKLGVKLD 141 (164)
T ss_dssp HHHHHTTCEEE
T ss_pred HHHHHCCCEEE
Confidence 45666654
No 203
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=20.11 E-value=4.7e+02 Score=23.40 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHHHhhhcCcccccccccccccccHHHHHHHHH-HHHchhcCCcEEEEEcCCCCchh
Q 018062 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (361)
Q Consensus 218 ~kv~vvsQTT~s~~~~~~I~~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A-~~eLa~~~vD~miVIGGknSSNT 296 (361)
..|+++... ++-.-|.++.+-+.+...+. + -++.+.++ ....++|.. ++.|.+..+|.+|+.+...+
T Consensus 69 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~--- 136 (344)
T 3kjx_A 69 NLVAVIIPS-LSNMVFPEVLTGINQVLEDT-E-----LQPVVGVT--DYLPEKEEKVLYEMLSWRPSGVIIAGLEHS--- 136 (344)
T ss_dssp SEEEEEESC-SSSSSHHHHHHHHHHHHTSS-S-----SEEEEEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCC---
T ss_pred CEEEEEeCC-CCcHHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEECCCCC---
Confidence 578888754 33445777777776643221 1 12222222 123345533 44454568999999875543
Q ss_pred HHHHHHHHhcCCCeEEeCC
Q 018062 297 SHLQEIAEDRGIPSYWIDS 315 (361)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~ 315 (361)
..+.+.+.+.+.|...+.+
T Consensus 137 ~~~~~~l~~~~iPvV~i~~ 155 (344)
T 3kjx_A 137 EAARAMLDAAGIPVVEIMD 155 (344)
T ss_dssp HHHHHHHHHCSSCEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEeC
Confidence 3566667788999988853
No 204
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=20.09 E-value=1e+02 Score=30.09 Aligned_cols=52 Identities=10% Similarity=-0.080 Sum_probs=39.4
Q ss_pred CCCcccHHHHHHHHHHHHhh--------------CCCCceEEecccc--cCHHHHHHHHHcCcEEecC
Q 018062 33 YGFCWGVERAVQIAYEARKQ--------------FPEEKIWITNEII--HNPTVNKRLEEMAVQNIPV 84 (361)
Q Consensus 33 ~GFC~GV~RAI~~a~~~~~~--------------~~~~~Vy~lG~iI--HN~~Vv~~L~~~GV~~v~~ 84 (361)
.+|..|.+++++..++.+++ ..+.+|+..|-.+ .++.+.+.|++.|+.+|-+
T Consensus 221 ~~~~~~~~~~~~~~~~l~~el~~r~~~g~~~~~~~~~~Ril~~G~p~~~~~~~l~~~le~~G~~vV~~ 288 (408)
T 3o3m_A 221 IVCARGKKETTEAFKLLIEELEDNMKTGKSSFRGEEKYRIMMEGIPCWPYIGYKMKTLAKFGVNMTGS 288 (408)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSSCSCCCEEEEEESCCCGGGHHHHHHHHHHHTEEEEEC
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEECCCCcccHHHHHHHHHhCCCEEEEE
Confidence 45888999999887664421 1134799999764 6788999999999999964
Done!