BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018063
         (361 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O29470|Y788_ARCFU Uncharacterized transporter AF_0788 OS=Archaeoglobus fulgidus
           (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
           100126) GN=AF_0788 PE=3 SV=1
          Length = 308

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-FWARDDVK 180
           K++ +   L ++ +++ S  P++K A + M P +F  VRF ++ + FLPF+  W   D  
Sbjct: 39  KRLYADLGLALVALIWGSTFPVVKIALDSMSPFAFNTVRFFIACLFFLPFLKGWDFKD-- 96

Query: 181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWF 239
               G ++G+   LGY  + +GL  + A  A FI+   V++ P+   ++   +       
Sbjct: 97  ----GFKIGIASFLGYTFQTVGLDYTTATNAGFITSTYVVLAPIISWLVYKDVFDKRDVS 152

Query: 240 GVLISALGVGMLECSG-SPPSVGDFLNFLSAIFFGIHMLRTERISR 284
           GVL++ +G   L  SG S  ++GD L    A+FFG  +      SR
Sbjct: 153 GVLLAFVGFYFL--SGYSGFNIGDILMLFCALFFGAEIAMISHYSR 196


>sp|Q9UYC6|LONB_PYRAB Archaeal Lon protease OS=Pyrococcus abyssi (strain GE5 / Orsay)
           GN=lon PE=3 SV=1
          Length = 998

 Score = 36.6 bits (83), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 28/145 (19%)

Query: 102 SESVQIITKRPFWKRVLFASKKIRSIFLLNVITI-------------VYASDIPILKAAE 148
           +E+V+++TK  F K +L+A+K+I    L  V+ +             VY +D   LK A 
Sbjct: 270 NENVEVLTKDGFTK-LLYANKRIGKQKLRRVVNLEKDYWFALTPDHKVYTTDG--LKEAG 326

Query: 149 EIMHPASFCAVRFV--------MSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEA 200
           EI       +V           +  I  LP      DD + R     +G+  + G   E 
Sbjct: 327 EITEKDELISVPITVFDCEDEDLKKIGLLPLT---SDDERLRKIATLMGILFNGGSIDEG 383

Query: 201 LGLLTSDAGRASFISLFTVIVVPLF 225
           LG+LT  + R S I  F + +  LF
Sbjct: 384 LGVLTLKSER-SVIEKFVITLKELF 407


>sp|Q68XV0|SAM_RICTY S-adenosylmethionine uptake transporter OS=Rickettsia typhi (strain
           ATCC VR-144 / Wilmington) GN=sam PE=3 SV=1
          Length = 294

 Score = 32.7 bits (73), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 20/167 (11%)

Query: 151 MHPASFCAVRFVMSAIPFLPF-VFWARDDVKTRNAGIEL--GLWVSLGYFVEALGLLTSD 207
           +H       RF+ S+I  LPF V++ +  +KTR+  I +  GL +  G      GL  + 
Sbjct: 36  LHSFEVAFFRFLFSSIVLLPFVVYYGKSTLKTRHPVIHVLRGLLLFFGMTSWTYGLTIAP 95

Query: 208 AGRASFISLFTVIVVPLFDGMLGAIIPAHT-----WFGVLISALG-VGMLECSGSPPSVG 261
              A+ IS      +PLF  +L   I         W   ++  +G V ML+     P   
Sbjct: 96  VTTATVISF----SIPLFTLILAVFILNENIIWQRWVVTVVGFIGLVVMLK-----PHTK 146

Query: 262 DF-LNFLSAIFFGIHMLRTERISRS-TKKENFLPLLGYEICVVALLS 306
           DF    L  I   I     + I++    KE+ L +L Y   V A++S
Sbjct: 147 DFNPEILYLILAAISFAMLDIINKKFVVKESMLSMLFYSAIVTAIVS 193


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.137    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,093,646
Number of Sequences: 539616
Number of extensions: 5057661
Number of successful extensions: 14552
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 14547
Number of HSP's gapped (non-prelim): 15
length of query: 361
length of database: 191,569,459
effective HSP length: 119
effective length of query: 242
effective length of database: 127,355,155
effective search space: 30819947510
effective search space used: 30819947510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)