Query 018063
Match_columns 361
No_of_seqs 384 out of 1411
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11272 putative DMT superfam 99.9 6.5E-23 1.4E-27 196.6 28.2 216 126-360 9-231 (292)
2 PRK11453 O-acetylserine/cystei 99.9 1.5E-22 3.2E-27 194.7 28.4 221 127-360 6-233 (299)
3 PRK11689 aromatic amino acid e 99.9 2.1E-22 4.5E-27 193.4 25.5 213 124-360 3-233 (295)
4 PLN00411 nodulin MtN21 family 99.9 2.8E-21 6E-26 190.4 26.5 224 122-360 10-274 (358)
5 TIGR00688 rarD rarD protein. T 99.9 9.7E-21 2.1E-25 177.8 26.3 157 125-285 2-171 (256)
6 PRK10532 threonine and homoser 99.9 1.3E-20 2.8E-25 180.9 27.1 212 123-360 10-227 (293)
7 TIGR00950 2A78 Carboxylate/Ami 99.9 2.4E-20 5.2E-25 174.6 25.2 205 137-360 1-210 (260)
8 PRK15430 putative chlorampheni 99.9 6.8E-20 1.5E-24 176.1 26.3 179 121-304 4-192 (296)
9 PTZ00343 triose or hexose phos 99.8 4.7E-16 1E-20 153.1 28.2 229 124-360 48-290 (350)
10 TIGR00817 tpt Tpt phosphate/ph 99.8 2.1E-16 4.5E-21 152.1 25.1 172 142-314 19-198 (302)
11 TIGR03340 phn_DUF6 phosphonate 99.7 3.9E-15 8.4E-20 141.9 24.9 216 127-360 3-229 (281)
12 COG0697 RhaT Permeases of the 99.7 1.2E-14 2.6E-19 136.6 27.5 216 123-360 5-233 (292)
13 COG5006 rhtA Threonine/homoser 99.6 2.4E-13 5.3E-18 124.9 20.9 210 126-360 13-228 (292)
14 TIGR00776 RhaT RhaT L-rhamnose 99.5 1E-11 2.2E-16 119.3 22.6 167 126-300 2-187 (290)
15 PF06027 DUF914: Eukaryotic pr 99.4 5.3E-11 1.1E-15 116.1 25.2 186 125-314 13-219 (334)
16 KOG4510 Permease of the drug/m 99.4 1.1E-13 2.3E-18 128.0 1.6 212 122-354 35-266 (346)
17 COG2962 RarD Predicted permeas 99.3 4.6E-10 1E-14 105.7 24.0 214 123-359 5-228 (293)
18 PF00892 EamA: EamA-like trans 99.3 2.8E-11 6E-16 99.7 11.4 117 135-252 1-125 (126)
19 COG2510 Predicted membrane pro 99.2 6.1E-11 1.3E-15 98.6 10.8 127 126-252 4-138 (140)
20 KOG2765 Predicted membrane pro 99.0 3.4E-09 7.4E-14 102.6 14.1 163 184-358 161-334 (416)
21 PF13536 EmrE: Multidrug resis 99.0 3.7E-09 8.1E-14 87.3 12.0 97 158-255 2-108 (113)
22 TIGR00950 2A78 Carboxylate/Ami 99.0 2.4E-08 5.3E-13 93.3 17.2 126 124-249 127-260 (260)
23 PF08449 UAA: UAA transporter 98.7 1.3E-05 2.9E-10 77.3 25.1 160 152-312 31-205 (303)
24 PF04142 Nuc_sug_transp: Nucle 98.7 3.3E-06 7.1E-11 79.4 20.0 170 179-358 14-202 (244)
25 PRK10532 threonine and homoser 98.6 2E-06 4.3E-11 82.6 17.5 128 124-252 147-280 (293)
26 PRK11689 aromatic amino acid e 98.6 2.7E-06 5.8E-11 81.8 16.4 127 124-253 155-287 (295)
27 PRK11272 putative DMT superfam 98.5 6.2E-06 1.3E-10 79.1 17.0 129 124-253 149-285 (292)
28 PLN00411 nodulin MtN21 family 98.5 5.3E-06 1.1E-10 82.2 15.7 130 124-253 188-328 (358)
29 KOG2234 Predicted UDP-galactos 98.4 0.0003 6.5E-09 68.4 25.1 224 125-358 15-271 (345)
30 TIGR03340 phn_DUF6 phosphonate 98.3 4.3E-06 9.3E-11 79.7 10.3 128 124-251 143-281 (281)
31 PRK11453 O-acetylserine/cystei 98.2 5.9E-05 1.3E-09 72.6 16.7 131 124-254 142-288 (299)
32 TIGR00817 tpt Tpt phosphate/ph 98.2 2.3E-05 4.9E-10 75.4 13.3 130 124-253 144-293 (302)
33 COG0697 RhaT Permeases of the 98.1 0.00021 4.5E-09 66.9 17.4 129 124-253 153-287 (292)
34 TIGR00776 RhaT RhaT L-rhamnose 98.1 4.4E-05 9.6E-10 73.4 12.8 127 124-252 151-287 (290)
35 PRK15051 4-amino-4-deoxy-L-ara 98.1 0.00013 2.7E-09 60.4 13.7 60 193-252 48-108 (111)
36 KOG1443 Predicted integral mem 98.0 0.00022 4.8E-09 68.0 15.7 134 183-316 85-222 (349)
37 PRK15430 putative chlorampheni 98.0 0.00017 3.7E-09 69.3 15.2 126 129-254 153-286 (296)
38 PF03151 TPT: Triose-phosphate 98.0 0.00046 9.9E-09 59.2 15.7 125 126-250 1-150 (153)
39 PTZ00343 triose or hexose phos 98.0 0.00037 8.1E-09 68.8 16.6 128 124-251 193-346 (350)
40 KOG1444 Nucleotide-sugar trans 97.9 0.0029 6.3E-08 60.9 20.4 208 140-358 27-245 (314)
41 KOG3912 Predicted integral mem 97.9 0.00027 5.8E-09 66.7 12.9 170 139-309 17-224 (372)
42 PRK02971 4-amino-4-deoxy-L-ara 97.8 0.00068 1.5E-08 57.5 13.6 117 126-254 3-123 (129)
43 KOG1441 Glucose-6-phosphate/ph 97.8 0.00014 3.1E-09 70.5 9.9 172 143-314 35-219 (316)
44 KOG2766 Predicted membrane pro 97.7 3.4E-06 7.4E-11 78.3 -2.1 155 152-309 47-212 (336)
45 KOG4314 Predicted carbohydrate 97.5 0.0012 2.6E-08 59.5 11.4 92 195-286 66-161 (290)
46 PRK13499 rhamnose-proton sympo 97.5 0.014 2.9E-07 57.6 19.8 151 122-276 4-190 (345)
47 COG5006 rhtA Threonine/homoser 97.4 0.0041 8.8E-08 58.2 13.8 127 123-249 146-278 (292)
48 PRK10650 multidrug efflux syst 97.2 0.015 3.1E-07 48.0 13.0 69 183-251 36-106 (109)
49 PF06027 DUF914: Eukaryotic pr 97.0 0.018 3.8E-07 56.6 14.4 132 122-253 165-305 (334)
50 PF10639 UPF0546: Uncharacteri 97.0 0.0028 6.1E-08 52.4 7.4 108 131-251 2-112 (113)
51 PRK11431 multidrug efflux syst 96.8 0.019 4.2E-07 46.9 10.7 65 188-252 35-101 (105)
52 PF08449 UAA: UAA transporter 96.8 0.053 1.2E-06 52.2 15.7 127 126-252 155-296 (303)
53 COG2076 EmrE Membrane transpor 96.8 0.017 3.7E-07 47.2 9.9 65 188-252 36-102 (106)
54 PF06800 Sugar_transport: Suga 96.7 0.037 8.1E-07 52.6 13.6 117 123-242 136-256 (269)
55 PRK10452 multidrug efflux syst 96.7 0.021 4.6E-07 47.8 10.4 64 190-253 38-103 (120)
56 KOG1442 GDP-fucose transporter 96.7 0.0041 8.9E-08 58.8 6.6 131 216-357 136-271 (347)
57 PRK09541 emrE multidrug efflux 96.7 0.027 5.9E-07 46.4 10.7 63 191-253 39-103 (110)
58 COG5070 VRG4 Nucleotide-sugar 96.2 0.08 1.7E-06 48.9 11.9 146 200-357 86-240 (309)
59 TIGR00688 rarD rarD protein. T 95.7 0.28 6.1E-06 45.7 13.6 98 129-228 150-254 (256)
60 KOG1580 UDP-galactose transpor 95.6 0.19 4.2E-06 46.8 11.6 126 188-314 91-225 (337)
61 PF06800 Sugar_transport: Suga 95.5 0.95 2.1E-05 43.2 16.4 115 180-299 43-172 (269)
62 PF04657 DUF606: Protein of un 95.5 0.74 1.6E-05 39.4 14.3 123 128-250 4-138 (138)
63 PF05653 Mg_trans_NIPA: Magnes 95.3 0.11 2.3E-06 50.4 9.5 117 122-253 4-122 (300)
64 PF00893 Multi_Drug_Res: Small 95.3 0.12 2.5E-06 41.2 8.1 53 191-243 38-92 (93)
65 PRK13499 rhamnose-proton sympo 94.8 1 2.2E-05 44.5 14.6 130 123-252 172-340 (345)
66 COG2962 RarD Predicted permeas 94.5 1.8 4E-05 41.5 15.0 118 134-253 157-283 (293)
67 KOG1581 UDP-galactose transpor 94.2 5.7 0.00012 38.5 19.0 192 152-355 50-255 (327)
68 PF00892 EamA: EamA-like trans 94.1 0.078 1.7E-06 42.8 4.4 72 270-360 1-72 (126)
69 KOG4510 Permease of the drug/m 92.3 0.086 1.9E-06 49.9 2.2 119 127-245 193-317 (346)
70 COG3238 Uncharacterized protei 91.4 9.1 0.0002 33.3 13.9 126 126-252 6-145 (150)
71 PF03151 TPT: Triose-phosphate 91.3 1.9 4.2E-05 36.5 9.5 56 261-316 1-60 (153)
72 PF06379 RhaT: L-rhamnose-prot 90.4 9.2 0.0002 37.7 14.0 155 123-280 5-193 (344)
73 KOG1441 Glucose-6-phosphate/ph 90.1 0.81 1.7E-05 44.7 6.7 130 123-252 161-306 (316)
74 KOG1581 UDP-galactose transpor 89.4 5.6 0.00012 38.5 11.4 129 122-250 169-310 (327)
75 COG2510 Predicted membrane pro 89.0 3.7 8E-05 34.9 8.8 81 261-359 4-84 (140)
76 TIGR00803 nst UDP-galactose tr 88.8 4.5 9.8E-05 36.8 10.4 61 190-250 160-221 (222)
77 KOG4831 Unnamed protein [Funct 88.6 1.5 3.2E-05 35.9 5.9 111 128-252 6-124 (125)
78 COG4975 GlcU Putative glucose 88.1 0.11 2.4E-06 48.6 -0.9 154 126-283 3-175 (288)
79 PF07857 DUF1632: CEO family ( 86.2 16 0.00035 34.6 12.5 158 126-285 1-208 (254)
80 KOG1580 UDP-galactose transpor 80.9 13 0.00028 34.9 9.2 126 125-250 172-310 (337)
81 KOG2765 Predicted membrane pro 74.4 28 0.0006 34.9 9.9 131 124-254 246-391 (416)
82 KOG2922 Uncharacterized conser 72.8 2.5 5.5E-05 41.1 2.3 120 119-254 15-137 (335)
83 TIGR00803 nst UDP-galactose tr 66.8 68 0.0015 29.0 10.4 28 259-286 84-111 (222)
84 PRK02237 hypothetical protein; 63.7 82 0.0018 25.9 9.3 30 224-253 75-105 (109)
85 COG4975 GlcU Putative glucose 62.8 3.9 8.5E-05 38.5 1.3 95 149-244 177-272 (288)
86 PF04246 RseC_MucC: Positive r 60.6 13 0.00028 31.3 4.1 42 207-248 66-107 (135)
87 COG3086 RseC Positive regulato 60.0 17 0.00036 31.5 4.6 46 202-247 68-113 (150)
88 KOG1582 UDP-galactose transpor 59.4 72 0.0016 30.8 9.0 91 224-315 148-244 (367)
89 KOG1444 Nucleotide-sugar trans 57.9 82 0.0018 30.8 9.4 48 125-172 157-206 (314)
90 PF07857 DUF1632: CEO family ( 57.5 44 0.00096 31.7 7.4 57 121-177 179-247 (254)
91 COG1742 Uncharacterized conser 57.3 99 0.0022 25.3 8.3 24 230-253 81-104 (109)
92 PF02694 UPF0060: Uncharacteri 55.4 99 0.0022 25.3 8.1 33 221-253 70-103 (107)
93 PRK10862 SoxR reducing system 54.6 18 0.0004 31.5 4.1 28 203-230 69-96 (154)
94 PF06123 CreD: Inner membrane 54.1 1.9E+02 0.004 29.7 11.7 48 126-176 301-348 (430)
95 KOG2322 N-methyl-D-aspartate r 53.4 1.7E+02 0.0037 27.4 10.3 51 229-279 159-214 (237)
96 PRK11715 inner membrane protei 53.2 2E+02 0.0043 29.5 11.8 27 150-176 328-354 (436)
97 KOG1443 Predicted integral mem 51.0 2.5E+02 0.0055 27.6 11.5 128 124-251 163-313 (349)
98 COG4657 RnfA Predicted NADH:ub 49.1 79 0.0017 28.0 7.0 79 232-310 96-185 (193)
99 COG5070 VRG4 Nucleotide-sugar 48.4 1.1E+02 0.0023 28.8 8.1 21 151-171 183-203 (309)
100 PF12811 BaxI_1: Bax inhibitor 48.3 2.6E+02 0.0056 26.9 22.1 18 294-311 244-261 (274)
101 PF06570 DUF1129: Protein of u 44.2 2.4E+02 0.0053 25.4 10.4 14 132-145 92-105 (206)
102 PF05297 Herpes_LMP1: Herpesvi 43.5 7.8 0.00017 37.2 0.0 61 206-266 47-113 (381)
103 KOG1583 UDP-N-acetylglucosamin 42.1 1.4E+02 0.0031 28.9 8.1 93 216-313 99-212 (330)
104 KOG3912 Predicted integral mem 36.3 4.2E+02 0.0091 25.9 12.0 126 124-250 175-331 (372)
105 KOG2766 Predicted membrane pro 35.7 55 0.0012 31.3 4.3 129 123-252 164-298 (336)
106 PF04657 DUF606: Protein of un 33.0 1.9E+02 0.0042 24.4 7.0 53 261-315 2-54 (138)
107 PF09656 PGPGW: Putative trans 30.7 1.9E+02 0.0041 20.6 5.4 46 236-285 4-49 (53)
108 PF07123 PsbW: Photosystem II 30.2 30 0.00065 29.5 1.5 29 120-148 101-129 (138)
109 COG3169 Uncharacterized protei 26.1 1.6E+02 0.0034 23.9 4.8 27 227-253 89-115 (116)
110 PF03419 Peptidase_U4: Sporula 25.6 5.7E+02 0.012 24.3 9.6 31 227-257 25-56 (293)
111 TIGR02865 spore_II_E stage II 25.1 9.5E+02 0.021 26.5 12.5 43 209-251 11-54 (764)
112 PF11700 ATG22: Vacuole efflux 24.2 8E+02 0.017 25.2 12.9 54 231-284 95-152 (477)
113 TIGR00997 ispZ intracellular s 23.8 5.3E+02 0.011 23.1 10.6 34 222-255 36-71 (178)
114 KOG3817 Uncharacterized conser 23.3 4.4E+02 0.0096 26.4 8.2 81 137-217 201-286 (452)
115 PF09586 YfhO: Bacterial membr 22.9 1E+03 0.022 26.1 18.3 27 153-179 92-118 (843)
116 KOG1582 UDP-galactose transpor 22.6 7.2E+02 0.016 24.2 10.4 105 151-255 218-334 (367)
No 1
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.92 E-value=6.5e-23 Score=196.60 Aligned_cols=216 Identities=16% Similarity=0.226 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC---ChhhHHHHHHHHHHHH-HHHHHHHH
Q 018063 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---DVKTRNAGIELGLWVS-LGYFVEAL 201 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~---~~~~~~~~~l~G~~~~-~~~~~~~~ 201 (361)
-.+.+++..++||++++++|...+++||..++++|+.+++++++++...+|+ ++++++.....|.+.. ..+.++++
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 88 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTV 88 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788889999999999999999999999999999999998887655432 3456666677777653 45667778
Q ss_pred HH-hhchHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhhhccCC-C-CCcHHHHHHHHHHHHHHHHHHH
Q 018063 202 GL-LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG-S-PPSVGDFLNFLSAIFFGIHMLR 278 (361)
Q Consensus 202 al-~~tsa~~aaii~~~~Pv~v~lla~ll~er~~~~~~igl~la~~Gv~ll~~~~-~-~~~~G~ll~L~aal~~A~~~v~ 278 (361)
+. +++++++++++.++.|++++++++++|||+++++++|++++++|+.++..++ . ....|++++++++++||.|.+.
T Consensus 89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~ 168 (292)
T PRK11272 89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW 168 (292)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 88 9999999999999999999999987899999999999999999999886543 2 2347999999999999999999
Q ss_pred HHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHh
Q 018063 279 TERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI 358 (361)
Q Consensus 279 ~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~l 358 (361)
.||..++ ++...+.+++.+++++..+.....+... . ...+...|..++|+|+++|+++|.+
T Consensus 169 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 169 SSRLPLP----VGMMAGAAEMLAAGVVLLIASLLSGERL----------T-----ALPTLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred HHhcCCC----cchHHHHHHHHHHHHHHHHHHHHcCCcc----------c-----ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9997654 2455678888888887777665433210 0 0013568999999999999999988
Q ss_pred hc
Q 018063 359 EV 360 (361)
Q Consensus 359 q~ 360 (361)
++
T Consensus 230 ~~ 231 (292)
T PRK11272 230 YM 231 (292)
T ss_pred HH
Confidence 74
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.92 E-value=1.5e-22 Score=194.74 Aligned_cols=221 Identities=15% Similarity=0.150 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHH-HHHHHHHHHHhh
Q 018063 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVS-LGYFVEALGLLT 205 (361)
Q Consensus 127 ~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~~-~~~~~~~~al~~ 205 (361)
.++.++++++||++++++|...+++||..+.++|+.+++++++++..++|.+ ++.....|+... ..+.+++.++++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~ 82 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVP---LNLLLGYGLTISFGQFAFLFCAINF 82 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999887776655433322 223333454433 334566788888
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC---CC-cHHHHHHHHHHHHHHHHHHHH
Q 018063 206 -SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS---PP-SVGDFLNFLSAIFFGIHMLRT 279 (361)
Q Consensus 206 -tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~---~~-~~G~ll~L~aal~~A~~~v~~ 279 (361)
.++++++++.+++|+++++++++ +|||+++++++|++++++|+.++..++. +. ..|++++++++++||+|.++.
T Consensus 83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~ 162 (299)
T PRK11453 83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFN 162 (299)
T ss_pred cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999965 7999999999999999999998876531 22 369999999999999999999
Q ss_pred HHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHhh
Q 018063 280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE 359 (361)
Q Consensus 280 rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~lq 359 (361)
||..++.+..+......++++.+.+.........+.... ....+...+...|..++|+|+++|+++|.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~ 232 (299)
T PRK11453 163 KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSAT----------MIHSLVTIDMTTILSLMYLAFVATIVGYGIW 232 (299)
T ss_pred HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchh----------hhhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 998765432234455566666655544444333332110 0000111356789999999999999999987
Q ss_pred c
Q 018063 360 V 360 (361)
Q Consensus 360 ~ 360 (361)
+
T Consensus 233 ~ 233 (299)
T PRK11453 233 G 233 (299)
T ss_pred H
Confidence 4
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.91 E-value=2.1e-22 Score=193.44 Aligned_cols=213 Identities=15% Similarity=0.089 Sum_probs=155.0
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH-HHHHHHHHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALG 202 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~-~~~~~~~~~a 202 (361)
.++++++++++++||++++.+|.+.+++||+.+.++|+.+++++++++..+++.++++++ ..+.|.+. ...+.+++.+
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~a 81 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKR-YLLAGGLLFVSYEICLALS 81 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHH-HHHHHhHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999988876422222222222 33333333 3334455566
Q ss_pred Hhh----chHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC------------CCcHHHHHH
Q 018063 203 LLT----SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS------------PPSVGDFLN 265 (361)
Q Consensus 203 l~~----tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~------------~~~~G~ll~ 265 (361)
+++ +++++++++.+++|+++++++++ +|||+++++++|++++++|++++..++. +...|++++
T Consensus 82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~ 161 (295)
T PRK11689 82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLA 161 (295)
T ss_pred HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHH
Confidence 654 57888999999999999999975 7999999999999999999998876532 123599999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHH
Q 018063 266 FLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPAL 345 (361)
Q Consensus 266 L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ll 345 (361)
++++++||+|.++.||..+++ ++.... + ..+++...+.....+... . ..+...|..++
T Consensus 162 l~aa~~~A~~~v~~k~~~~~~---~~~~~~--~-~~~~~~l~~~~~~~~~~~---------~-------~~~~~~~~~l~ 219 (295)
T PRK11689 162 FIGAFIWAAYCNVTRKYARGK---NGITLF--F-ILTALALWIKYFLSPQPA---------M-------VFSLPAIIKLL 219 (295)
T ss_pred HHHHHHHHHHHHHHhhccCCC---CchhHH--H-HHHHHHHHHHHHHhcCcc---------c-------cCCHHHHHHHH
Confidence 999999999999999998765 444332 2 233343333333322100 0 02356788888
Q ss_pred HHHHHHHHHHHHhhc
Q 018063 346 YTGIFSTGICLWIEV 360 (361)
Q Consensus 346 ylgv~~T~lay~lq~ 360 (361)
|.| ++++++|.+++
T Consensus 220 ~~~-~~t~~~~~l~~ 233 (295)
T PRK11689 220 LAA-AAMGFGYAAWN 233 (295)
T ss_pred HHH-HHHHHHHHHHH
Confidence 888 57899998875
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.89 E-value=2.8e-21 Score=190.39 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=173.8
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHhc-c-C--C---hhhHHHHHHHHHHHH
Q 018063 122 KKIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWA-R-D--D---VKTRNAGIELGLWVS 193 (361)
Q Consensus 122 ~~~~g~l~llla~llWG~~~~~~K~~~~-~~~P~~l~~~R~lia~liLl~~~~~~-~-~--~---~~~~~~~~l~G~~~~ 193 (361)
|+.+.++.|++.-+..+...++.|.+++ +++|+.+.++|+.+|+++++++.+.+ | + + ++++....+.|++.+
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999887 79999999999999999998886542 1 1 2 344556667777664
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh-------cCcccHHHHHHHHHHHHHhhhhccC-CC---------
Q 018063 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-------GAIIPAHTWFGVLISALGVGMLECS-GS--------- 256 (361)
Q Consensus 194 ~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~ll-------~er~~~~~~igl~la~~Gv~ll~~~-~~--------- 256 (361)
..+.+++.|++|+++++++++.+++|+++.++++++ +||+++++++|++++++|+.++... +.
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 169 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP 169 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 455678899999999999999999999999999754 8999999999999999999987642 10
Q ss_pred ----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018063 257 ----------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQ 320 (361)
Q Consensus 257 ----------------~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~ 320 (361)
+...|+++.++++++||+|+++.||..++++ +....++|++.++++...++.+..+..+ ..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~l~~~~~~-~~ 246 (358)
T PLN00411 170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP--AAFTVSFLYTVCVSIVTSMIGLVVEKNN-PS 246 (358)
T ss_pred cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cHhHHHHHHHHHHHHHHHHHHHHHccCC-cc
Confidence 0134999999999999999999999988874 4557788888888887776666544211 00
Q ss_pred CCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHhhc
Q 018063 321 DFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEV 360 (361)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~lq~ 360 (361)
. |. .+.+. ..+.++|+|++ +.++|.+++
T Consensus 247 -----~--~~---~~~~~-~~~~i~y~~i~-t~lay~lw~ 274 (358)
T PLN00411 247 -----V--WI---IHFDI-TLITIVTMAII-TSVYYVIHS 274 (358)
T ss_pred -----c--ce---eccch-HHHHHHHHHHH-HHHHHHHHH
Confidence 1 00 00122 24568898876 578998874
No 5
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.89 E-value=9.7e-21 Score=177.84 Aligned_cols=157 Identities=14% Similarity=0.119 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC-----------Chhh-HHHHHHHHHHH
Q 018063 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD-----------DVKT-RNAGIELGLWV 192 (361)
Q Consensus 125 ~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~-----------~~~~-~~~~~l~G~~~ 192 (361)
+|++++++++++||++++++|. .+++||.+++++|+++++++++++...+++ ++++ +....+.|++.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI 80 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 4788999999999999999998 467999999999999999887765532211 1112 22345567666
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCCCCcHHHHHHHHHHHH
Q 018063 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIF 271 (361)
Q Consensus 193 ~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~~~~~G~ll~L~aal~ 271 (361)
...+.++++|++++++++++++.+++|++++++++ ++|||+++++|+|++++++|+.++..++.+. .+++++++++
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~---~~~~l~aa~~ 157 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSL---PWEALVLAFS 157 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHH
Confidence 67788999999999999999999999999999996 5899999999999999999999886543222 1467899999
Q ss_pred HHHHHHHHHHhhhc
Q 018063 272 FGIHMLRTERISRS 285 (361)
Q Consensus 272 ~A~~~v~~rk~~~~ 285 (361)
||+|.+..||..++
T Consensus 158 ~a~~~i~~~~~~~~ 171 (256)
T TIGR00688 158 FTAYGLIRKALKNT 171 (256)
T ss_pred HHHHHHHHhhcCCC
Confidence 99999999987653
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.88 E-value=1.3e-20 Score=180.86 Aligned_cols=212 Identities=16% Similarity=0.109 Sum_probs=166.0
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc--CChhhHHHHHHHHHHHHHHHHHHH
Q 018063 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTRNAGIELGLWVSLGYFVEA 200 (361)
Q Consensus 123 ~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~ 200 (361)
+.+++.+++++++.|++++.++|.+.+++||..+.++|+++++++++++..+++ .++++++..+..|......+.+++
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 89 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFY 89 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999998887764432 345677777777877666677888
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhhhccCCC---C-CcHHHHHHHHHHHHHHHHH
Q 018063 201 LGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS---P-PSVGDFLNFLSAIFFGIHM 276 (361)
Q Consensus 201 ~al~~tsa~~aaii~~~~Pv~v~lla~ll~er~~~~~~igl~la~~Gv~ll~~~~~---~-~~~G~ll~L~aal~~A~~~ 276 (361)
+++++++++.++++.++.|+++.+++ +||.. ++.++.++++|+.++..++. + ...|++++++++++||+|.
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~---~~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~ 164 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS---SRRPV--DFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYI 164 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh---cCChH--HHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998765 35443 45567889999998774421 2 2469999999999999999
Q ss_pred HHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHH
Q 018063 277 LRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICL 356 (361)
Q Consensus 277 v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay 356 (361)
+..||..+++ ++... .++.++++++..++....+. .. . .+...|..++|+|+++|+++|
T Consensus 165 v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~-~~-------~---------~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 165 LSGQRAGAEH---GPATV-AIGSLIAALIFVPIGALQAG-EA-------L---------WHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred HHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHHccC-cc-------c---------CCHHHHHHHHHHHHHHHHHHH
Confidence 9999998765 45554 46666777776666554321 00 0 124467778899999999999
Q ss_pred Hhhc
Q 018063 357 WIEV 360 (361)
Q Consensus 357 ~lq~ 360 (361)
.+++
T Consensus 224 ~l~~ 227 (293)
T PRK10532 224 SLEM 227 (293)
T ss_pred HHHH
Confidence 9875
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.88 E-value=2.4e-20 Score=174.60 Aligned_cols=205 Identities=16% Similarity=0.218 Sum_probs=164.6
Q ss_pred HHhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHHhhchHHHHHHH
Q 018063 137 YASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAGRASFI 214 (361)
Q Consensus 137 WG~~~~~~K~~~~-~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~-~~~~~~~~~~al~~tsa~~aaii 214 (361)
||.+++.+|..++ ..|+..+.+.|++.+.+++.++..++ +++++++.....|.+ ....+.+++.|++++++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii 79 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL 79 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence 8999999999887 68999999999999988887765554 445566666666655 45667888999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC--CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Q 018063 215 SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENF 291 (361)
Q Consensus 215 ~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~--~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~ 291 (361)
.++.|+++.+++.+ +|||+++++++|++++++|+.++..++. ....|++++++++++|+.+.+..|+..++.+ .++
T Consensus 80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~ 158 (260)
T TIGR00950 80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG-PEL 158 (260)
T ss_pred HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC-chH
Confidence 99999999999965 7999999999999999999998876542 3458999999999999999999999887653 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHhhc
Q 018063 292 LPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEV 360 (361)
Q Consensus 292 l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~lq~ 360 (361)
.....+++.+++++.++.....+... . .+...|..++++++++++++|.+++
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (260)
T TIGR00950 159 LQFTGWVLLLGALLLLPFAWFLGPNP--------Q---------ALSLQWGALLYLGLIGTALAYFLWN 210 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC--------C---------cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888777765543210 0 1345788899999999999998864
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.87 E-value=6.8e-20 Score=176.07 Aligned_cols=179 Identities=12% Similarity=0.097 Sum_probs=135.9
Q ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC---------ChhhHHHHHHHHHH
Q 018063 121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---------DVKTRNAGIELGLW 191 (361)
Q Consensus 121 ~~~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~---------~~~~~~~~~l~G~~ 191 (361)
+++.+|++++++++++||.+++++|.. +++||.++.++|++++.++++++...+++ +++++......+..
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL 82 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 456789999999999999999999985 67999999999999999877766543221 11222222222334
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCCCCcHHHHHHHHHHH
Q 018063 192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAI 270 (361)
Q Consensus 192 ~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~~~~~G~ll~L~aal 270 (361)
....+.++++|++++++++++++.++.|+++.++++ ++|||+++++|+|++++++|++++..++++. .++++++++
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~---~~~~l~aa~ 159 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL---PIIALGLAF 159 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHHH
Confidence 456678899999999999999999999999999996 4799999999999999999999987543322 257888999
Q ss_pred HHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHH
Q 018063 271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVAL 304 (361)
Q Consensus 271 ~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al 304 (361)
+||+|.+..||..++.. .+....+.+++.++..
T Consensus 160 ~~a~~~i~~r~~~~~~~-~~~~~~~~~~~~~~~~ 192 (296)
T PRK15430 160 SFAFYGLVRKKIAVEAQ-TGMLIETMWLLPVAAI 192 (296)
T ss_pred HHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHH
Confidence 99999999888754321 1233344455544433
No 9
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.76 E-value=4.7e-16 Score=153.10 Aligned_cols=229 Identities=10% Similarity=0.048 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHh--cc-CC----hhhHHHHHHHHHHHHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFW--AR-DD----VKTRNAGIELGLWVSLG 195 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~-P~~l~~~R~lia~liLl~~~~~--~~-~~----~~~~~~~~l~G~~~~~~ 195 (361)
.+..++.+.-..+=.......|.+++.+| |+.++.+|++++.++...+... ++ ++ +++++..+.+|++....
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~ 127 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFV 127 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34333333333333344567899999999 9999999999998765444321 11 11 23456677788877655
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCCCC-cHHHHHHHHHHHHHH
Q 018063 196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFG 273 (361)
Q Consensus 196 ~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~~~-~~G~ll~L~aal~~A 273 (361)
+...+.|+++++++.+.++.++.|+++.++++ ++|||.+++++++++++++|+.+....+.++ ..|++++++|+++||
T Consensus 128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a 207 (350)
T PTZ00343 128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSS 207 (350)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHH
Confidence 66667999999999999999999999999996 5899999999999999999999987655444 469999999999999
Q ss_pred HHHHHHHHhhhccC----CCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHH
Q 018063 274 IHMLRTERISRSTK----KENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349 (361)
Q Consensus 274 ~~~v~~rk~~~~~~----~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv 349 (361)
+|.++.||..++.+ +.++..+..++.++++++++|+.+..|.... ...+.......+...+..+++ .+
T Consensus 208 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~-------~~~~~~~~~~~~~~~~~~~l~-~i 279 (350)
T PTZ00343 208 LRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKW-------VPVWTNYTANMTNYTKGIIIF-KI 279 (350)
T ss_pred HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHhhhcccccchHHHHH-HH
Confidence 99999999887642 2345556666788899998888775542110 000000000011112344556 46
Q ss_pred HHHHHHHHhhc
Q 018063 350 FSTGICLWIEV 360 (361)
Q Consensus 350 ~~T~lay~lq~ 360 (361)
+.++++|.+++
T Consensus 280 ~~s~l~~~l~n 290 (350)
T PTZ00343 280 FFSGVWYYLYN 290 (350)
T ss_pred HHHHHHHHHHH
Confidence 66789988875
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.76 E-value=2.1e-16 Score=152.05 Aligned_cols=172 Identities=12% Similarity=0.073 Sum_probs=142.7
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHH---hcc--CChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 018063 142 PILKAAEEI-MHPASFCAVRFVMSAIPFLPFVF---WAR--DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS 215 (361)
Q Consensus 142 ~~~K~~~~~-~~P~~l~~~R~lia~liLl~~~~---~~~--~~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~ 215 (361)
+.-|.++++ -+|..++++|+.++.+++.+... +++ .++++++..+..|++....+.+.+.+++|+++++++++.
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~ 98 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK 98 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 466988887 77999999999998877665421 111 245678888888988777788899999999999999999
Q ss_pred HHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHH
Q 018063 216 LFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLP 293 (361)
Q Consensus 216 ~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~~~-~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~ 293 (361)
++.|+++++++++ +|||+++++++|++++++|+.+....+.+. ..|++++++++++||+|.+..||..++. +.|+..
T Consensus 99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-~~~~~~ 177 (302)
T TIGR00817 99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIK-SLDKTN 177 (302)
T ss_pred hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCccc
Confidence 9999999999964 799999999999999999998765444333 4699999999999999999999988721 137889
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 018063 294 LLGYEICVVALLSTIWVLVGG 314 (361)
Q Consensus 294 l~~~~~l~~al~~l~~~l~~~ 314 (361)
++.+++..+++.++|+....+
T Consensus 178 ~~~~~~~~~~~~l~p~~~~~~ 198 (302)
T TIGR00817 178 LYAYISIMSLFLLSPPAFITE 198 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999999999998888877655
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.71 E-value=3.9e-15 Score=141.93 Aligned_cols=216 Identities=14% Similarity=0.082 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc--cC----Chhh-HHHHHHHHHHHHHHHHHH
Q 018063 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--RD----DVKT-RNAGIELGLWVSLGYFVE 199 (361)
Q Consensus 127 ~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~--~~----~~~~-~~~~~l~G~~~~~~~~~~ 199 (361)
.++.++++++|+...+..|...+.-++. .++++..+.++++++...+ +. .+++ +......|......+.++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999655554443 4777777777777765542 11 1223 333344454555667788
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC--CCcHHHHHHHHHHHHHHHHH
Q 018063 200 ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHM 276 (361)
Q Consensus 200 ~~al~~tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~--~~~~G~ll~L~aal~~A~~~ 276 (361)
+.|++++++++++.+.++.|+++.+++++ +|||+++++|+|++++++|++++..++. ....|++++++++++|++|.
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~ 160 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS 160 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999975 8999999999999999999998876532 22468889999999999999
Q ss_pred HHHHHhhhccCC-CChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH
Q 018063 277 LRTERISRSTKK-ENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC 355 (361)
Q Consensus 277 v~~rk~~~~~~~-~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~la 355 (361)
+..|+..++.++ .+......++++..++...+.....+.. .. . .+...++.+++++.++++++
T Consensus 161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~-----~~~~~~~~~~~~~~~~s~l~ 224 (281)
T TIGR03340 161 LSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR---------SM--F-----PYARQILPSATLGGLMIGGA 224 (281)
T ss_pred hhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc---------ch--h-----hhHHHHHHHHHHHHHHHHHH
Confidence 998886544321 1122233334333322222222111210 00 0 01235678899999999999
Q ss_pred HHhhc
Q 018063 356 LWIEV 360 (361)
Q Consensus 356 y~lq~ 360 (361)
|.+++
T Consensus 225 ~~l~~ 229 (281)
T TIGR03340 225 YALVL 229 (281)
T ss_pred HHHHH
Confidence 98764
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.71 E-value=1.2e-14 Score=136.65 Aligned_cols=216 Identities=21% Similarity=0.290 Sum_probs=159.0
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHhcc--CC--hhhHHHHHHHHH-HHHHHH
Q 018063 123 KIRSIFLLNVITIVYASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFWAR--DD--VKTRNAGIELGL-WVSLGY 196 (361)
Q Consensus 123 ~~~g~l~llla~llWG~~~~~~K~~~~~-~~P~~l~~~R~lia~liLl~~~~~~~--~~--~~~~~~~~l~G~-~~~~~~ 196 (361)
...+....++..+.|+.+....|...++ .++....+.|++++.+++.+...+++ .. .+.++...+.+. .....+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 4567778888889999999999998886 77888888899999888554443332 11 112223333443 345567
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-Hh-cCcccHHHHHHHHHHHHHhhhhccCCCC----CcHHHHHHHHHHH
Q 018063 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-ML-GAIIPAHTWFGVLISALGVGMLECSGSP----PSVGDFLNFLSAI 270 (361)
Q Consensus 197 ~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll-~er~~~~~~igl~la~~Gv~ll~~~~~~----~~~G~ll~L~aal 270 (361)
.+++.++++++++.++.+.++.|+++.+++. ++ +||++++++.++.++++|+.++..++.. ...|+++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~ 164 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL 164 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999995 54 9999999999999999999999987653 2479999999999
Q ss_pred HHHHHHHHHHHhhhccCCCChHHHHH-HHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHH
Q 018063 271 FFGIHMLRTERISRSTKKENFLPLLG-YEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349 (361)
Q Consensus 271 ~~A~~~v~~rk~~~~~~~~~~l~l~~-~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv 349 (361)
+||++.+..|+.. +. ++..... +++........+.. ..... . ..+...|..++++|+
T Consensus 165 ~~a~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~-------~~~~~~~~~~~~~g~ 222 (292)
T COG0697 165 LWALYTALVKRLS-RL---GPVTLALLLQLLLALLLLLLFF--LSGFG---------A-------PILSRAWLLLLYLGV 222 (292)
T ss_pred HHHHHHHHHHHhc-CC---ChHHHHHHHHHHHHHHHHHHHH--hcccc---------c-------cCCHHHHHHHHHHHH
Confidence 9999999999987 43 4555555 55542222222221 11100 0 013457999999999
Q ss_pred HHHHHHHHhhc
Q 018063 350 FSTGICLWIEV 360 (361)
Q Consensus 350 ~~T~lay~lq~ 360 (361)
++++++|.++.
T Consensus 223 ~~~~i~~~~~~ 233 (292)
T COG0697 223 FSTGLAYLLWY 233 (292)
T ss_pred HHHHHHHHHHH
Confidence 99998888753
No 13
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.59 E-value=2.4e-13 Score=124.87 Aligned_cols=210 Identities=18% Similarity=0.129 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc--cCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 018063 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--RDDVKTRNAGIELGLWVSLGYFVEALGL 203 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~al 203 (361)
.++.++.+++.--....+.|.....++|.-.+.+|..+++++++++.+.. |..+++++..+..|+.+...+.+||.++
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si 92 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI 92 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888999999999999999999999999998887543 4467788888899999888899999999
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhhhccCCC---C-CcHHHHHHHHHHHHHHHHHHHH
Q 018063 204 LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS---P-PSVGDFLNFLSAIFFGIHMLRT 279 (361)
Q Consensus 204 ~~tsa~~aaii~~~~Pv~v~lla~ll~er~~~~~~igl~la~~Gv~ll~~~~~---~-~~~G~ll~L~aal~~A~~~v~~ 279 (361)
+..+-+.+.-|.++-|+.+.++ ..+| .+..+-+.+++.|+.++.-.+. + ...|..++++++.+|++|++..
T Consensus 93 ~riPlGiAVAiEF~GPL~vA~~---~sRr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G 167 (292)
T COG5006 93 ERIPLGIAVAIEFTGPLAVALL---SSRR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLG 167 (292)
T ss_pred HhccchhhhhhhhccHHHHHHH---hccc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence 9999999999999999877653 2333 3455566777888877764432 2 3689999999999999999999
Q ss_pred HHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHhh
Q 018063 280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE 359 (361)
Q Consensus 280 rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~lq 359 (361)
+|..+.. +...-+...|.+++++.+|+........ . .++.....-+.+|+++|++.|.++
T Consensus 168 ~r~g~~~---~g~~g~a~gm~vAaviv~Pig~~~ag~~--------------l---~~p~ll~laLgvavlSSalPYsLE 227 (292)
T COG5006 168 QRAGRAE---HGTAGVAVGMLVAALIVLPIGAAQAGPA--------------L---FSPSLLPLALGVAVLSSALPYSLE 227 (292)
T ss_pred chhcccC---CCchHHHHHHHHHHHHHhhhhhhhcchh--------------h---cChHHHHHHHHHHHHhcccchHHH
Confidence 9998654 4556677888999999998876433211 1 245667777889999999999997
Q ss_pred c
Q 018063 360 V 360 (361)
Q Consensus 360 ~ 360 (361)
.
T Consensus 228 m 228 (292)
T COG5006 228 M 228 (292)
T ss_pred H
Confidence 5
No 14
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.47 E-value=1e-11 Score=119.33 Aligned_cols=167 Identities=14% Similarity=0.075 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC---C-hhhHHHHHHHHHHHHHHHHHHHH
Q 018063 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---D-VKTRNAGIELGLWVSLGYFVEAL 201 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~---~-~~~~~~~~l~G~~~~~~~~~~~~ 201 (361)
++++.++++++||++++..|... +.++.++. |..++.+++..+....+. + ++.+....+.|+....++.+++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ 78 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK 78 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence 46788899999999999999866 78887776 788888877655433221 1 23344556667766777889999
Q ss_pred HHhhchHHHHHHHHH-HHHHHHHHHHH-HhcCcccHHH----HHHHHHHHHHhhhhccCCC---------CCcHHHHHHH
Q 018063 202 GLLTSDAGRASFISL-FTVIVVPLFDG-MLGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNF 266 (361)
Q Consensus 202 al~~tsa~~aaii~~-~~Pv~v~lla~-ll~er~~~~~----~igl~la~~Gv~ll~~~~~---------~~~~G~ll~L 266 (361)
++++++.+.+-.+.+ ++++++.+++. ++|||.++++ ++|+++.++|+.++...+. +...|.++++
T Consensus 79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l 158 (290)
T TIGR00776 79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL 158 (290)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence 999999999987777 88888888886 5899999989 9999999999988765321 1258999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 018063 267 LSAIFFGIHMLRTERISRSTKKENFLPLLGYEIC 300 (361)
Q Consensus 267 ~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l 300 (361)
+++++|+.|.+..|+.. + ++...++.|..
T Consensus 159 ~sg~~y~~~~~~~~~~~--~---~~~~~~~~~~~ 187 (290)
T TIGR00776 159 MSTIGYLVYVVVAKAFG--V---DGLSVLLPQAI 187 (290)
T ss_pred HHHHHHHHHHHHHHHcC--C---CcceehhHHHH
Confidence 99999999999998763 4 56666444443
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.44 E-value=5.3e-11 Score=116.06 Aligned_cols=186 Identities=16% Similarity=0.177 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHhcc-C------ChhhHHHHHHHHHHHHH
Q 018063 125 RSIFLLNVITIVYASDIPILKAAEE---IMHPASFCAVRFVMSAIPFLPFVFWAR-D------DVKTRNAGIELGLWVSL 194 (361)
Q Consensus 125 ~g~l~llla~llWG~~~~~~K~~~~---~~~P~~l~~~R~lia~liLl~~~~~~~-~------~~~~~~~~~l~G~~~~~ 194 (361)
+..++-=+.+++-..+........+ +.|.++..+...++.. +..+....|+ . .+++|+..++++++-..
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~-vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~ 91 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLAL-VYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVE 91 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHH-HHhhhhhhccccccchhhcchhHHHHHHHHHHHHH
Confidence 3333333334444445555554433 3555555544444433 3334333332 1 12456666778888888
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCC----------CCCcHHHH
Q 018063 195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG----------SPPSVGDF 263 (361)
Q Consensus 195 ~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~----------~~~~~G~l 263 (361)
++++...|++||+.+.+.++..+..++++++++ ++|+|.++.+++|++++++|+.+++..| .+...||+
T Consensus 92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDl 171 (334)
T PF06027_consen 92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDL 171 (334)
T ss_pred HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHH
Confidence 888999999999999999999999999999997 5899999999999999999999876542 12368999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 018063 264 LNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGG 314 (361)
Q Consensus 264 l~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~ 314 (361)
+++++++.||+++++.++..++. +......+.-+++.+++.+.....+
T Consensus 172 l~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile 219 (334)
T PF06027_consen 172 LALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILE 219 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999988876 5666666666677777777666555
No 16
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.38 E-value=1.1e-13 Score=128.03 Aligned_cols=212 Identities=16% Similarity=0.102 Sum_probs=147.1
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHHHHHHH
Q 018063 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWVSLGYF 197 (361)
Q Consensus 122 ~~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~----~~~~~~~~~l~G~~~~~~~~ 197 (361)
+..+|.+++.++..+-..+.+..|. .+.+|....-.|+++-.++-.+....++. +....++.++.|+..+.+..
T Consensus 35 ~p~~gl~l~~vs~ff~~~~vv~t~~--~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 35 KPNLGLLLLTVSYFFNSCMVVSTKV--LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM 112 (346)
T ss_pred CCccCceehhhHHHHhhHHHhhhhh--hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence 3456777777774444455555554 46889999999966655555444333221 11222344556766666666
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCC---------------CCcHH
Q 018063 198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---------------PPSVG 261 (361)
Q Consensus 198 ~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~---------------~~~~G 261 (361)
..+++++|.+.+.|.+|..+.|+++.+++| ++||+.++...++..+.+.||+++++|.. ....|
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g 192 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG 192 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence 778999999999999999999999999997 48999999999999999999999998731 12468
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhH
Q 018063 262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW 341 (361)
Q Consensus 262 ~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 341 (361)
.+.++.++++-|.-.++.|++.++. |......+..+++.+..++.....+. +.++. ...+|
T Consensus 193 t~aai~s~lf~asvyIilR~iGk~~---h~~msvsyf~~i~lV~s~I~~~~ig~-----------~~lP~-----cgkdr 253 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGKNA---HAIMSVSYFSLITLVVSLIGCASIGA-----------VQLPH-----CGKDR 253 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhccc---cEEEEehHHHHHHHHHHHHHHhhccc-----------eecCc-----cccce
Confidence 8888999988888888899998875 44444445455555655554433332 22222 34578
Q ss_pred HHHHHHHHHHHHH
Q 018063 342 VPALYTGIFSTGI 354 (361)
Q Consensus 342 l~llylgv~~T~l 354 (361)
+.++.+|+++-+.
T Consensus 254 ~l~~~lGvfgfig 266 (346)
T KOG4510|consen 254 WLFVNLGVFGFIG 266 (346)
T ss_pred EEEEEehhhhhHH
Confidence 8888888877443
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.35 E-value=4.6e-10 Score=105.67 Aligned_cols=214 Identities=17% Similarity=0.174 Sum_probs=150.7
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc---------CChhhHHHHHHHHHHHH
Q 018063 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---------DDVKTRNAGIELGLWVS 193 (361)
Q Consensus 123 ~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~---------~~~~~~~~~~l~G~~~~ 193 (361)
..+|+++.+.+.++||..+...|. ++++|+.++...|.+-+..+++.+....| ++++.+....+.++...
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKL-LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 468999999999999999999997 47899999999999999887766543322 12233444556677777
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCCCCcHHHHHHHHHHHHH
Q 018063 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFF 272 (361)
Q Consensus 194 ~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~~~~~G~ll~L~aal~~ 272 (361)
..+..+.++..+-.+-++++=.+..|++..+++. ++|||+++.||++++++.+||.......+++. ...+.=+++|
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lp---wval~la~sf 160 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP---WVALALALSF 160 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHH
Confidence 7788889999998999999999999999999996 58999999999999999999998776544432 1234447899
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHH
Q 018063 273 GIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFST 352 (361)
Q Consensus 273 A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T 352 (361)
+.|-.. ||..+- |+.+-....++.-...++...+..+... ++ .+..+...|+.++..|+++
T Consensus 161 ~~Ygl~-RK~~~v----~a~~g~~lE~l~l~p~al~yl~~l~~~~--------~~-----~~~~~~~~~~LLv~aG~vT- 221 (293)
T COG2962 161 GLYGLL-RKKLKV----DALTGLTLETLLLLPVALIYLLFLADSG--------QF-----LQQNANSLWLLLVLAGLVT- 221 (293)
T ss_pred HHHHHH-HHhcCC----chHHhHHHHHHHHhHHHHHHHHHHhcCc--------hh-----hhcCCchHHHHHHHhhHHH-
Confidence 999864 554432 4454444445544444444444333211 00 0001244677777777654
Q ss_pred HHHHHhh
Q 018063 353 GICLWIE 359 (361)
Q Consensus 353 ~lay~lq 359 (361)
+++..+.
T Consensus 222 avpL~lf 228 (293)
T COG2962 222 AVPLLLF 228 (293)
T ss_pred HHHHHHH
Confidence 5666554
No 18
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.30 E-value=2.8e-11 Score=99.71 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=97.1
Q ss_pred HHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-c-c----CChhhHHHHHHHHHH-HHHHHHHHHHHHhhch
Q 018063 135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-A-R----DDVKTRNAGIELGLW-VSLGYFVEALGLLTSD 207 (361)
Q Consensus 135 llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~-~-~----~~~~~~~~~~l~G~~-~~~~~~~~~~al~~ts 207 (361)
++||...+..|...++.||....++|+.++++ ++++... + + .+.+++......|.. ...++.+++.++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 46999999999999999999999999999997 4443332 1 1 123455555666666 4677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhc
Q 018063 208 AGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (361)
Q Consensus 208 a~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~ 252 (361)
++.++.+.++.|+++.+++++ ++|++++++++|+++.++|++++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999964 799999999999999999998864
No 19
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.25 E-value=6.1e-11 Score=98.62 Aligned_cols=127 Identities=18% Similarity=0.211 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC-------ChhhHHHHHHHHHHHHHHHHH
Q 018063 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD-------DVKTRNAGIELGLWVSLGYFV 198 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~-------~~~~~~~~~l~G~~~~~~~~~ 198 (361)
..++.++++++||...++.|+..+++||...++.|..+..+++..++...++ +.|.|....+-|+....++.+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~ 83 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999998888887765431 456677777788877888999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063 199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (361)
Q Consensus 199 ~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~ 252 (361)
+|.+++.-.++...=+..+.|+++.++++ ++|||++..+|+|+++-.+|++++.
T Consensus 84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999988899999999999997 5899999999999999999998765
No 20
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.05 E-value=3.4e-09 Score=102.61 Aligned_cols=163 Identities=12% Similarity=0.197 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHhhhhccCCC------
Q 018063 184 AGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSGS------ 256 (361)
Q Consensus 184 ~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~ll-~er~~~~~~igl~la~~Gv~ll~~~~~------ 256 (361)
..+....+-+...+++..++.+|+++...++.++.-+|+..++.++ .||.+..|.+++++.+.||+++...+.
T Consensus 161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~ 240 (416)
T KOG2765|consen 161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDL 240 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccC
Confidence 3344444456677788899999999999999999999999999764 799999999999999999999876632
Q ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhh
Q 018063 257 ---PPSVGDFLNFLSAIFFGIHMLRTERISRST-KKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTML 332 (361)
Q Consensus 257 ---~~~~G~ll~L~aal~~A~~~v~~rk~~~~~-~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 332 (361)
....|+++++++|+.||+|+++.||...++ +++|.-.+-.+.-++..+++.|..++..... . +.+..+
T Consensus 241 ~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~----~--e~F~lP-- 312 (416)
T KOG2765|consen 241 PASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG----E--ERFELP-- 312 (416)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc----c--CcccCC--
Confidence 236899999999999999999999988776 3444333333333334444444443332110 0 112222
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHHh
Q 018063 333 WDWMVTFPWVPALYTGIFSTGICLWI 358 (361)
Q Consensus 333 ~~~~~~~~wl~llylgv~~T~lay~l 358 (361)
+......++..++++|+++=.+
T Consensus 313 ----~~~q~~~vv~~~ligtvvSDyl 334 (416)
T KOG2765|consen 313 ----SSTQFSLVVFNNLIGTVVSDYL 334 (416)
T ss_pred ----CCceeEeeeHhhHHHHHHHHHH
Confidence 2334556777778888776544
No 21
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.03 E-value=3.7e-09 Score=87.34 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHhccC--------ChhhHHHHHHHHHHHH-HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-
Q 018063 158 AVRFVMSAIPFLPFVFWARD--------DVKTRNAGIELGLWVS-LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG- 227 (361)
Q Consensus 158 ~~R~lia~liLl~~~~~~~~--------~~~~~~~~~l~G~~~~-~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~- 227 (361)
.+|+..+.+++..+...+++ +++++.+.+..|+... .++.++++|+++++ +.++.+.++.|+++.++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 58999999888877655422 1233445555566654 67888999999999 5888999999999999996
Q ss_pred HhcCcccHHHHHHHHHHHHHhhhhccCC
Q 018063 228 MLGAIIPAHTWFGVLISALGVGMLECSG 255 (361)
Q Consensus 228 ll~er~~~~~~igl~la~~Gv~ll~~~~ 255 (361)
++|||+++++|++++++++|++++..++
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 5899999999999999999999988764
No 22
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.99 E-value=2.4e-08 Score=93.29 Aligned_cols=126 Identities=23% Similarity=0.256 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMHP--ASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGY 196 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P--~~l~~~R~lia~liLl~~~~~~~~----~~~~~~~~~l~G~~~-~~~~ 196 (361)
.+|.++.+++++.|+...+..|...++.+| .....+|+.++.++++++....++ +.+++...+..|++. ..++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999998877774 455557899999888887665322 233444455556553 5678
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhh
Q 018063 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG 249 (361)
Q Consensus 197 ~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ 249 (361)
.+++.++++.+++.++.+.++.|++..++++ +++|+++..+++|.++.+.|+.
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999996 5899999999999999999973
No 23
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.68 E-value=1.3e-05 Score=77.31 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-
Q 018063 152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG- 227 (361)
Q Consensus 152 ~P~~l~~~R~lia~liLl~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~- 227 (361)
.|..+++.-++...++-.+.....+ .++..++.....+++......+.+.+++|++...-.++-+..|+.+++++.
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l 110 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL 110 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence 3889999988887776665544332 233445666777888777778889999999999999999999999999996
Q ss_pred HhcCcccHHHHHHHHHHHHHhhhhccCCC-------C----CcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHH
Q 018063 228 MLGAIIPAHTWFGVLISALGVGMLECSGS-------P----PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLG 296 (361)
Q Consensus 228 ll~er~~~~~~igl~la~~Gv~ll~~~~~-------~----~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~ 296 (361)
++|+|.++++++++++-.+|+.+....+. . ...|+++.+++.++-+...+..+|..++++ .++....+
T Consensus 111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~-~~~~~~mf 189 (303)
T PF08449_consen 111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG-KSPWELMF 189 (303)
T ss_pred hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHH
Confidence 57999999999999999999998765421 1 124999999999999999999999988875 46788899
Q ss_pred HHHHHHHHHHHHHHHH
Q 018063 297 YEICVVALLSTIWVLV 312 (361)
Q Consensus 297 ~~~l~~al~~l~~~l~ 312 (361)
+..+++.++.++....
T Consensus 190 y~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 190 YTNLFSLPFLLILLFL 205 (303)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998888877776665
No 24
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.67 E-value=3.3e-06 Score=79.35 Aligned_cols=170 Identities=13% Similarity=0.144 Sum_probs=119.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCC-
Q 018063 179 VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS- 256 (361)
Q Consensus 179 ~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~- 256 (361)
+++.....+-+++....+.+.+.++++.+++.--++..+-.++++++++ ++|+|++++||+++.+-++|+.++-.++.
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3454555566677777788889999999999999999999999999996 58999999999999999999998754310
Q ss_pred -----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018063 257 -----------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSS 319 (361)
Q Consensus 257 -----------------~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~ 319 (361)
+...|.++.++++++-++..++.+|..|+.+ .+...-+....+.+.++.++.....+ .+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~ 171 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSD-GSAI 171 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhccc-cccc
Confidence 1247999999999999999999999998864 23333343334444444444433322 2211
Q ss_pred CCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHh
Q 018063 320 QDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI 358 (361)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~l 358 (361)
. -.+.++..+...|..++..++.|-.+++.+
T Consensus 172 ~--------~~g~f~G~~~~~~~~i~~~a~gGllva~v~ 202 (244)
T PF04142_consen 172 S--------ESGFFHGYSWWVWIVIFLQAIGGLLVAFVL 202 (244)
T ss_pred c--------cCCchhhcchHHHHHHHHHHHhhHHHHHHH
Confidence 1 011222235567777777777776666654
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.63 E-value=2e-06 Score=82.62 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGYFV 198 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~----~~~~~~~~~l~G~~~-~~~~~~ 198 (361)
..|.++.+++++.|+...+..|...++.+|....... +++++++.++...... +...+...+.+|+.. ..+|.+
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999887778888776554 5556666665544321 222233334556653 467889
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063 199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (361)
Q Consensus 199 ~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~ 252 (361)
+++++++.+++.++++.++.|++..++++ +++|+++..+++|.++.++|+++..
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996 5899999999999999999988764
No 26
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.56 E-value=2.7e-06 Score=81.78 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc-----CChhhHHHHHHHHHHHHHHHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-----DDVKTRNAGIELGLWVSLGYFV 198 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~-----~~~~~~~~~~l~G~~~~~~~~~ 198 (361)
..|.++++++++.|+...+..|...++.++....+ ..+++++.+...... .+...+...+..|+....+|.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l 231 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA 231 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999998776778776533 333333333222221 1223444444555545567899
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 199 ~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
++.++++.+++.++.+.++.|++..++++ +++|+++..+++|.++-+.|+++...
T Consensus 232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 99999999999999999999999999996 58999999999999999999987643
No 27
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.50 E-value=6.2e-06 Score=79.09 Aligned_cols=129 Identities=10% Similarity=0.034 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC------ChhhHHHHHHHHHHH-HHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD------DVKTRNAGIELGLWV-SLGY 196 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~------~~~~~~~~~l~G~~~-~~~~ 196 (361)
..|.++.+++++.|+......|..... ++.....+.+.++++++.++...... +.+.|......|+.. ..++
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999885433 34566778888888887776543211 223454555556653 4678
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 197 ~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
.+++.++++.++++++++.++.|++..++++ +++|+++..+++|.++-+.|++++..
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999996 47999999999999999999988754
No 28
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.46 E-value=5.3e-06 Score=82.20 Aligned_cols=130 Identities=8% Similarity=0.065 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHHh-ccCChhh--------HHHHHHHHHHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMHP-ASFCAVRFVMSAIPFLPFVFW-ARDDVKT--------RNAGIELGLWVS 193 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P-~~l~~~R~lia~liLl~~~~~-~~~~~~~--------~~~~~l~G~~~~ 193 (361)
..|.++++++++.|+...+..|......++ ...+++-..++++.+.+.... .+.+.+. ....+..|+...
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~ 267 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITS 267 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHH
Confidence 458899999999999999999887666654 466667666666655444332 2211111 111222334334
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 194 ~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
..|.++++++++.+++.+++..++.|++..++++ +++|+++..+++|.++.++|+++...
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 5788899999999999999999999999999997 58999999999999999999988764
No 29
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.38 E-value=0.0003 Score=68.45 Aligned_cols=224 Identities=12% Similarity=0.145 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhc-c---CCHHHHHHHHHHHHHHHHHHHHHhcc----CC------------hhhHHH
Q 018063 125 RSIFLLNVITIVYASDIPILKAAEE-I---MHPASFCAVRFVMSAIPFLPFVFWAR----DD------------VKTRNA 184 (361)
Q Consensus 125 ~g~l~llla~llWG~~~~~~K~~~~-~---~~P~~l~~~R~lia~liLl~~~~~~~----~~------------~~~~~~ 184 (361)
.-++.+++..+.++......|+.-. + ..|...++.--++-.++.+..++++. .+ +++...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 4556677778889999999998654 3 66777777766666665555544431 10 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccC---C-----
Q 018063 185 GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS---G----- 255 (361)
Q Consensus 185 ~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~---~----- 255 (361)
..+-.+.....+.+++.++.+.+++.-.+...+-.+.+.++.. +++||.+++||.++++-++|+.++-.+ +
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~ 174 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS 174 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence 3333445555556888999999999999999999999999996 589999999999999999999988622 1
Q ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhh
Q 018063 256 ----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTM 331 (361)
Q Consensus 256 ----~~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~ 331 (361)
.....|....+.+.+.-++..++.+|..++.+ .+..+--.|+-+-+++.........+.+.. .|.+
T Consensus 175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~--~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i--------~~~g 244 (345)
T KOG2234|consen 175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN--VSLWIRNIQLYFFGILFNLLTILLQDGEAI--------NEYG 244 (345)
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHhhcccccc--------ccCC
Confidence 12358999999999999999999999987653 333333344433333333333322232221 1334
Q ss_pred hcccCChhhHHHHHHHHHHHHHHHHHh
Q 018063 332 LWDWMVTFPWVPALYTGIFSTGICLWI 358 (361)
Q Consensus 332 ~~~~~~~~~wl~llylgv~~T~lay~l 358 (361)
.++..+...|..++-.++.|-.++.+.
T Consensus 245 ff~G~s~~vw~vVl~~a~gGLlvs~v~ 271 (345)
T KOG2234|consen 245 FFYGYSSIVWLVVLLNAVGGLLVSLVM 271 (345)
T ss_pred ccccccHHHHHHHHHHhccchhHHHHH
Confidence 444456677888887777766666543
No 30
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.29 E-value=4.3e-06 Score=79.72 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCCHH----HHHHHHHHHHHHHHHHHHHhc-cCC--h--hhHHH-HHHHHHHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPA----SFCAVRFVMSAIPFLPFVFWA-RDD--V--KTRNA-GIELGLWVS 193 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~----~l~~~R~lia~liLl~~~~~~-~~~--~--~~~~~-~~l~G~~~~ 193 (361)
.++.++.+++++.|+...+..|....+.+|. ....+.+.+.++.+..+...+ +.. . ..+.. ....++...
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 222 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG 222 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 3566778889999999999888754444442 233333333322222222221 111 1 11222 223333445
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhh
Q 018063 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML 251 (361)
Q Consensus 194 ~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll 251 (361)
.+|.+++.++++.+++.++.+.++.|++..++++ +++|+++..+++|.++.++|++++
T Consensus 223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 6788999999999999999999999999999996 589999999999999999999764
No 31
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.23 E-value=5.9e-05 Score=72.55 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHH-hcc----------CChhhHHHHHHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMH---PASFCAVRFVMSAIPFLPFVF-WAR----------DDVKTRNAGIELG 189 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~---P~~l~~~R~lia~liLl~~~~-~~~----------~~~~~~~~~~l~G 189 (361)
..|.++.+++++.|+...+..|...+..+ .....++=.+++.+.+..... ..+ .+...+...+.+|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 46889999999999999999998654332 233333334444433332221 111 1223444445556
Q ss_pred HHH-HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063 190 LWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (361)
Q Consensus 190 ~~~-~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~ 254 (361)
++. ..+|.+++.++++.++++++.+..+.|++..++++ +++|+++..+++|.++.++|+.+...+
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 553 46788999999999999999999999999999996 589999999999999999999876543
No 32
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.21 E-value=2.3e-05 Score=75.39 Aligned_cols=130 Identities=16% Similarity=0.094 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHhcc-CC--hhhH-----------HH--H
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR-DD--VKTR-----------NA--G 185 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~--~~~P~~l~~~R~lia~liLl~~~~~~~-~~--~~~~-----------~~--~ 185 (361)
..|.++.+++++.|+...+..|...+ +.||..+.++-..++++.++++..... .. ..++ .. .
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 56899999999999999999998877 799999999999999988888765321 11 1100 01 1
Q ss_pred HHHHH-HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 186 IELGL-WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 186 ~l~G~-~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
+..+. .....+.+++.+++++++..++++..+.|+++.++++ +++|+++..+++|.++.++|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11222 1111224556799999999999999999999999996 58999999999999999999987643
No 33
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.11 E-value=0.00021 Score=66.94 Aligned_cols=129 Identities=16% Similarity=0.273 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHH-HHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHH-HHHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCA-VRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVS-LGYFV 198 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~-~R~lia~liLl~~~~~~~---~~~~~~~~~~l~G~~~~-~~~~~ 198 (361)
..|.++.+++.+.|+...+..|... ..++..... +-+.....+..+...... ...+.+......|+... .++.+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999766 777777776 333322222222222211 22345556666676655 57889
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 199 ~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
++.+++..+++..+.+..+.|++..++++ +++|+++..+++|.++-+.|+.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999886 47999999999999999999987654
No 34
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.10 E-value=4.4e-05 Score=73.38 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHH---HHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHHHHHHHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVR---FVMSAIPFLPFVFWARD-DVKTRNAGIELGLWVSLGYFVE 199 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R---~lia~liLl~~~~~~~~-~~~~~~~~~l~G~~~~~~~~~~ 199 (361)
.+|++..+++++.++......|.. +.||....+.- .+++++++.....+.+. ..+......+.|+.-..++.++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ia~~~y 228 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLMWGIGNFFY 228 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999975 58888884444 34444444333211111 1223334455777766778888
Q ss_pred HHHHh-hchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHH----HHHHHHHHHhhhhc
Q 018063 200 ALGLL-TSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTW----FGVLISALGVGMLE 252 (361)
Q Consensus 200 ~~al~-~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~----igl~la~~Gv~ll~ 252 (361)
+.+.+ +.+++.+.++.+..|+...++++ ++||+.+++++ +|.++-+.|+.++.
T Consensus 229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 89999 99999999999999999999996 58999999999 99999999988763
No 35
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.09 E-value=0.00013 Score=60.36 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (361)
Q Consensus 193 ~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~ 252 (361)
...+.++..++++.+.+.+..+.++.++++.++++ ++|||++.+|++|+.+.++|++++.
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45677888999999999999888899999999996 5899999999999999999998764
No 36
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.03 E-value=0.00022 Score=68.03 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHhhhhccCCCCCc-H
Q 018063 183 NAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG-AIIPAHTWFGVLISALGVGMLECSGSPPS-V 260 (361)
Q Consensus 183 ~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~ll~-er~~~~~~igl~la~~Gv~ll~~~~~~~~-~ 260 (361)
++..-.|+.....-.+-+++++|++.+.-+..=+..++|+.+++.++| ||.++.-..-+++-.+|+.+.+..+.+++ .
T Consensus 85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~ 164 (349)
T KOG1443|consen 85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIE 164 (349)
T ss_pred HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeeh
Confidence 344556666666667778899999888777777889999999998876 78888777788888889988888877764 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC--CCChHHHHHHHHHHHHHHHHHHHHHhccC
Q 018063 261 GDFLNFLSAIFFGIHMLRTERISRSTK--KENFLPLLGYEICVVALLSTIWVLVGGWF 316 (361)
Q Consensus 261 G~ll~L~aal~~A~~~v~~rk~~~~~~--~~~~l~l~~~~~l~~al~~l~~~l~~~~~ 316 (361)
|..+.++++++-++-....+.+.++.+ ..+|........-.-.+.++|..+.+|+.
T Consensus 165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~ 222 (349)
T KOG1443|consen 165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL 222 (349)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence 988888888877776666666665543 23555555544444455566666667754
No 37
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.02 E-value=0.00017 Score=69.34 Aligned_cols=126 Identities=8% Similarity=-0.045 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHhcc--C---ChhhHHHHHHHHHHHHHHHHHHHH
Q 018063 129 LLNVITIVYASDIPILKAAEEI--MHPASFCAVRFVMSAIPFLPFVFWAR--D---DVKTRNAGIELGLWVSLGYFVEAL 201 (361)
Q Consensus 129 ~llla~llWG~~~~~~K~~~~~--~~P~~l~~~R~lia~liLl~~~~~~~--~---~~~~~~~~~l~G~~~~~~~~~~~~ 201 (361)
..+++++.|+...+..|....+ .+......+=..++.+.++++..... . ....+......|+....++.+++.
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~ 232 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA 232 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999998888876432 22233333333333333222111100 0 111122233445555577889999
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063 202 GLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (361)
Q Consensus 202 al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~ 254 (361)
++++.+++.++.+.++.|++..++++ +++|+++..+++|.++.++|+.++..+
T Consensus 233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999996 589999999999999999888877543
No 38
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.98 E-value=0.00046 Score=59.16 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHHHhc-cCC---------h-------hh
Q 018063 126 SIFLLNVITIVYASDIPILKAAEE-------IMHPASFCAVRFVMSAIPFLPFVFWA-RDD---------V-------KT 181 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~K~~~~-------~~~P~~l~~~R~lia~liLl~~~~~~-~~~---------~-------~~ 181 (361)
|.++.+.+.+.-+...+..|.... ..++..+..+-...+.+++++..... +.+ . +.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 456778888889999998887653 47999999999999999988876532 110 0 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhh
Q 018063 182 RNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM 250 (361)
Q Consensus 182 ~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~l 250 (361)
+...+..|+..+..+...+.-++++++-..+++...-.+.+.++++ +++|+++..+++|++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 2223344555555566777889999999999999999999999996 48999999999999999999864
No 39
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.96 E-value=0.00037 Score=68.79 Aligned_cols=128 Identities=11% Similarity=0.126 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhcc-------CCHHHHHHHHHHHHHHHHHHHHHhc-cCC----h-------hh--H
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEI-------MHPASFCAVRFVMSAIPFLPFVFWA-RDD----V-------KT--R 182 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~-------~~P~~l~~~R~lia~liLl~~~~~~-~~~----~-------~~--~ 182 (361)
..|.++.+++.+.|+...+..|...++ +++..+..+-..+++++++|+.... ... + .. +
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 458999999999999999999987763 5677676666778888888875521 110 0 01 1
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhh
Q 018063 183 NAGI----ELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML 251 (361)
Q Consensus 183 ~~~~----l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll 251 (361)
.... ..|+..+..+...+++++++++...++...+-|+++.++++ +++|+++..+++|.++.++|+.+.
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 1111 11222222223344699999999999999999999999997 589999999999999999999764
No 40
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0029 Score=60.87 Aligned_cols=208 Identities=13% Similarity=0.092 Sum_probs=139.2
Q ss_pred hHHHHHHHhcc--CCHHHH-HHHHHHHHHHHHHHHHHhcc------CChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 018063 140 DIPILKAAEEI--MHPASF-CAVRFVMSAIPFLPFVFWAR------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR 210 (361)
Q Consensus 140 ~~~~~K~~~~~--~~P~~l-~~~R~lia~liLl~~~~~~~------~~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~ 210 (361)
.-+.-|.++.. .+-... ..+..+...+++.. +.+-| .+++..+..+-..++.......-..+++|.+...
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~-lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm 105 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLV-LKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPM 105 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchH
Confidence 44566887764 443333 33555555544443 33221 2333333333333443333334456889999999
Q ss_pred HHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCCCCc-HHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 018063 211 ASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPS-VGDFLNFLSAIFFGIHMLRTERISRSTKK 288 (361)
Q Consensus 211 aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~~~~-~G~ll~L~aal~~A~~~v~~rk~~~~~~~ 288 (361)
-.++-...|+++++.+. ++|.|.++..|.++....+|......++.+++ .|..|++...++-+.+.+..|+..+..+
T Consensus 106 ~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~- 184 (314)
T KOG1444|consen 106 FTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSAN- 184 (314)
T ss_pred HHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHHHhhcccc-
Confidence 99999999999999996 57877888999999999998888777766664 5899999999999999999998776542
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHh
Q 018063 289 ENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI 358 (361)
Q Consensus 289 ~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~l 358 (361)
.+-..+.++..+.....+....+++|+++. ...+ ...|.+...|..++.-++++-++.|..
T Consensus 185 l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~--------l~~~-~~~~~~~~~~~~~~lScv~gf~isy~s 245 (314)
T KOG1444|consen 185 LNKFGLVFYNNLLSLPPLLILSFITGELDA--------LSLN-FDNWSDSSVLVVMLLSCVMGFGISYTS 245 (314)
T ss_pred ccceeEEeehhHHHHHHHHHHHHHhcchHH--------HHhh-cccccchhHHHHHHHHHHHHHHHHHHH
Confidence 345567788888877777777777765320 0000 011234667888888888888887753
No 41
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.87 E-value=0.00027 Score=66.75 Aligned_cols=170 Identities=20% Similarity=0.261 Sum_probs=120.8
Q ss_pred hhHHHHHHHhc----cC----CHHHHHHHHHHHHHHHHHHHHHhccC-Ch------------h---hHHHH--HHHHHHH
Q 018063 139 SDIPILKAAEE----IM----HPASFCAVRFVMSAIPFLPFVFWARD-DV------------K---TRNAG--IELGLWV 192 (361)
Q Consensus 139 ~~~~~~K~~~~----~~----~P~~l~~~R~lia~liLl~~~~~~~~-~~------------~---~~~~~--~l~G~~~ 192 (361)
.+.+..|++-+ +. +|+..+..-|+-=.+++..+.+.|++ +. + ..+.. +.-.++-
T Consensus 17 ~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~D 96 (372)
T KOG3912|consen 17 FNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCD 96 (372)
T ss_pred HHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHH
Confidence 46677887642 22 36655555555555666665443311 00 1 11111 1123343
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCC-----------CCCcH
Q 018063 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG-----------SPPSV 260 (361)
Q Consensus 193 ~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~-----------~~~~~ 260 (361)
..+-.+.+.|+.+|+++.--.+-+...+|+.+++. +++++++.++|+|+..-..|++++...+ .+...
T Consensus 97 i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iit 176 (372)
T KOG3912|consen 97 IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIIT 176 (372)
T ss_pred HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchh
Confidence 44556778899999999888888888899999995 6899999999999999999998775431 13468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHH
Q 018063 261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIW 309 (361)
Q Consensus 261 G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~ 309 (361)
|+++.+.+-+.-|+..+.-+|..++++ ++|+..+.|+-++|.++....
T Consensus 177 GdllIiiaqiivaiQ~v~Eek~l~~~n-V~pl~avg~eGlfG~v~~slL 224 (372)
T KOG3912|consen 177 GDLLIIIAQIIVAIQMVCEEKQLKKSN-VAPLQAVGWEGLFGLVILSLL 224 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHhhhhhhHHHHHHHHH
Confidence 999999999999999999999888774 689999999998885544333
No 42
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.82 E-value=0.00068 Score=57.53 Aligned_cols=117 Identities=17% Similarity=0.075 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHHh
Q 018063 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLL 204 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~-~~~~~~~~~~al~ 204 (361)
+++++++..++=+..-++.|....+.+....... . +..+. .. .+ . ...+..|+. ....+.++..+++
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~-~~~~~----~~---~~--p-~~~i~lgl~~~~la~~~w~~aL~ 70 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F-IAALL----AF---GL--A-LRAVLLGLAGYALSMLCWLKALR 70 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H-HHHHH----HH---hc--c-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888889999998876654332221 1 10000 00 01 0 112344544 3456888999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHH---HhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063 205 TSDAGRASFISLFTVIVVPLFDG---MLGAIIPAHTWFGVLISALGVGMLECS 254 (361)
Q Consensus 205 ~tsa~~aaii~~~~Pv~v~lla~---ll~er~~~~~~igl~la~~Gv~ll~~~ 254 (361)
..+.+.+.-+.+..++++.+.++ +++|+++..+++|+++-++|++++...
T Consensus 71 ~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 71 YLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 99999998888888888877775 589999999999999999999988654
No 43
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.77 E-value=0.00014 Score=70.54 Aligned_cols=172 Identities=14% Similarity=0.139 Sum_probs=132.5
Q ss_pred HHHHHhc--c-CCHHHHHHHHHHHHHHHHHHHHHhcc---C---ChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 018063 143 ILKAAEE--I-MHPASFCAVRFVMSAIPFLPFVFWAR---D---DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213 (361)
Q Consensus 143 ~~K~~~~--~-~~P~~l~~~R~lia~liLl~~~~~~~---~---~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aai 213 (361)
.-|..+. + --|..++.+++..+.+.++.....+- . ++..+...+-+|+....+-.+-..++.+.+++-.-.
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~ 114 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT 114 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence 4577666 4 35788888877777766655433321 1 113456667778887777778889999999999999
Q ss_pred HHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCC
Q 018063 214 ISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRS-TKKEN 290 (361)
Q Consensus 214 i~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~~~-~~G~ll~L~aal~~A~~~v~~rk~~~~-~~~~~ 290 (361)
+=++.|+++.+++++ .+|+.++..+..+..-..||.+-...+.++ ..|.+.++++.+..+...++.++..++ ....|
T Consensus 115 iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~ 194 (316)
T KOG1441|consen 115 IKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLN 194 (316)
T ss_pred HHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 999999999999975 688999999999999999998877766555 489999999999999999999998842 22467
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHhc
Q 018063 291 FLPLLGYEICVVALLST-IWVLVGG 314 (361)
Q Consensus 291 ~l~l~~~~~l~~al~~l-~~~l~~~ 314 (361)
++.+..++--++.+.++ |+....+
T Consensus 195 ~~~ll~y~ap~s~~~Ll~P~~~~~~ 219 (316)
T KOG1441|consen 195 SMNLLYYTAPISLIFLLIPFLDYVE 219 (316)
T ss_pred chHHHHHhhhHHHHHHhcchHhhhc
Confidence 88888888878777777 6555444
No 44
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.72 E-value=3.4e-06 Score=78.32 Aligned_cols=155 Identities=20% Similarity=0.276 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhccCChh-hHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-h
Q 018063 152 HPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-L 229 (361)
Q Consensus 152 ~P~~l~~~R~lia~liLl~~~~~~~~~~~-~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l-l 229 (361)
.|..-.|+-+.+-+++-.+++..|++..+ .|+..+++++.-.-++++...|-+||+...+.++-.-....+.+++|+ +
T Consensus 47 ~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fL 126 (336)
T KOG2766|consen 47 APTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFL 126 (336)
T ss_pred CccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHH
Confidence 35566777777777777777666553322 345556666654444445567889999998888887766777888875 7
Q ss_pred cCcccHHHHHHHHHHHHHhhhhccCC---------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 018063 230 GAIIPAHTWFGVLISALGVGMLECSG---------SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEIC 300 (361)
Q Consensus 230 ~er~~~~~~igl~la~~Gv~ll~~~~---------~~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l 300 (361)
|.|.+..++.|++++++|+++++..+ .+...||.+.+++|-+||+.++.-..+.++. |...+....-+
T Consensus 127 ktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgL 203 (336)
T KOG2766|consen 127 KTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGL 203 (336)
T ss_pred HHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHH
Confidence 99999999999999999999886542 2346899999999999999999877777765 56666666667
Q ss_pred HHHHHHHHH
Q 018063 301 VVALLSTIW 309 (361)
Q Consensus 301 ~~al~~l~~ 309 (361)
+|++++.+-
T Consensus 204 fGaIIsaIQ 212 (336)
T KOG2766|consen 204 FGAIISAIQ 212 (336)
T ss_pred HHHHHHHHH
Confidence 888887776
No 45
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.54 E-value=0.0012 Score=59.50 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC---CCcHHHHHHHHHHH
Q 018063 195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS---PPSVGDFLNFLSAI 270 (361)
Q Consensus 195 ~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~---~~~~G~ll~L~aal 270 (361)
..+.+..+++..+++.++-+....-.|+.+++++ +|+|...-++++.++++.|++++...+. +...|+..++++++
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~ 145 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAF 145 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHH
Confidence 3567778999999999999999999999999975 8999999999999999999999886553 34689999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 018063 271 FFGIHMLRTERISRST 286 (361)
Q Consensus 271 ~~A~~~v~~rk~~~~~ 286 (361)
..|+|-+..|+.....
T Consensus 146 ~aAlYKV~FK~~iGnA 161 (290)
T KOG4314|consen 146 MAALYKVLFKMFIGNA 161 (290)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999987543
No 46
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.53 E-value=0.014 Score=57.61 Aligned_cols=151 Identities=18% Similarity=0.098 Sum_probs=101.1
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHhccCC--HHHHHHHHHHHHHHHHHHHHH----h-------ccCChhhHHHHHHH
Q 018063 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMH--PASFCAVRFVMSAIPFLPFVF----W-------ARDDVKTRNAGIEL 188 (361)
Q Consensus 122 ~~~~g~l~llla~llWG~~~~~~K~~~~~~~--P~~l~~~R~lia~liLl~~~~----~-------~~~~~~~~~~~~l~ 188 (361)
+-..|++..++++++||+.++..|. ....+ -++.+.. +++.++ .++.. . +..+.+.+...++.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~g--i~~wl~-~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGG--IFSWLI-LPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHH--HHHHHH-HHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 3467999999999999999999998 33333 2222110 111111 11111 0 11234455666777
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHHHHHHHH-hcCcc-------cHHHHHHHHHHHHHhhhhcc----CC
Q 018063 189 GLWVSLGYFVEALGLLTSDAGRAS-FISLFTVIVVPLFDGM-LGAII-------PAHTWFGVLISALGVGMLEC----SG 255 (361)
Q Consensus 189 G~~~~~~~~~~~~al~~tsa~~aa-ii~~~~Pv~v~lla~l-l~er~-------~~~~~igl~la~~Gv~ll~~----~~ 255 (361)
|++-..++..++.++++...+.+- +-.+++-+...++..+ ++|-. ...-.+|+++.++|+++... .+
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 887778888899999998888774 4456666777777754 45421 14567899999999998866 21
Q ss_pred ----------CCCcHHHHHHHHHHHHHHHHH
Q 018063 256 ----------SPPSVGDFLNFLSAIFFGIHM 276 (361)
Q Consensus 256 ----------~~~~~G~ll~L~aal~~A~~~ 276 (361)
.+...|.++++++.+.+++|.
T Consensus 160 ~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 160 RKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred cccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 124689999999999999999
No 47
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.43 E-value=0.0041 Score=58.16 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHHH
Q 018063 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGYF 197 (361)
Q Consensus 123 ~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~----~~~~~~~~~l~G~~~-~~~~~ 197 (361)
+..|..+.+.+..+|...-+..|-+-+..+--.-+..-+++++++.+|+-...-. .+.-....+..|++. .+.|.
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence 3568899999999999999999877655666667777889999999998664321 222233334455554 36799
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhh
Q 018063 198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG 249 (361)
Q Consensus 198 ~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ 249 (361)
+...+++..+...-+++.++.|.+..+.++ +++|+++..||++++.-+++..
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999996 5899999999999887666543
No 48
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.18 E-value=0.015 Score=47.98 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhh
Q 018063 183 NAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML 251 (361)
Q Consensus 183 ~~~~l~G~~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll 251 (361)
......-+.....|++...++++.|.+.+ ++-.+.--+.+.+.+. +++|+++..|++|+.+-++|++.+
T Consensus 36 ~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 36 IYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 33334444445567788889999999887 5556666677777775 589999999999999999999876
No 49
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.03 E-value=0.018 Score=56.64 Aligned_cols=132 Identities=14% Similarity=0.014 Sum_probs=95.6
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-ccCC-----h--hhHHHHHHHHHHHH
Q 018063 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-ARDD-----V--KTRNAGIELGLWVS 193 (361)
Q Consensus 122 ~~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~-~~~~-----~--~~~~~~~l~G~~~~ 193 (361)
+..+|.++++++++++|.+.+..|....+.|+.++...=-+++.++..+.+.. ++.. + +.....+..++.++
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf 244 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLF 244 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHH
Confidence 34789999999999999999999999888999888877777777776655432 2211 1 11112122233345
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 194 ~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
..|.+....++++++....+=.-+..++..++.++ +++++++..++|.++-++|+++...
T Consensus 245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEc
Confidence 55666677788888876655555667788888864 7999999999999999999988754
No 50
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.02 E-value=0.0028 Score=52.42 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=70.6
Q ss_pred HHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHHhhchHH
Q 018063 131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAG 209 (361)
Q Consensus 131 lla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~-~~~~~~~~~~al~~tsa~ 209 (361)
++.+++||.+.+++|.+..+.++..-.. +..-....++ +.++. ..++. +-.+-..|++.+...+.+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~Ll----------~n~~y--~ipf~lNq~GSv~f~~~L~~~dlS 68 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKFLL----------LNPKY--IIPFLLNQSGSVLFFLLLGSADLS 68 (113)
T ss_pred eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHHHH----------HhHHH--HHHHHHHHHHHHHHHHHHhcCCce
Confidence 4568899999999999877655443331 3221111110 11222 22322 223455667788888887
Q ss_pred HHHHH-HHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhhhh
Q 018063 210 RASFI-SLFTVIVVPLFDGMLGAII-PAHTWFGVLISALGVGML 251 (361)
Q Consensus 210 ~aaii-~~~~Pv~v~lla~ll~er~-~~~~~igl~la~~Gv~ll 251 (361)
.+.-+ .++.-+++.+.+++++|+. ++++++|+++.+.|+.+.
T Consensus 69 lavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 69 LAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred eeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 77655 4777788888888887776 578899999999999764
No 51
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.82 E-value=0.019 Score=46.91 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063 188 LGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (361)
Q Consensus 188 ~G~~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~ 252 (361)
.-+.....|++...+++..|.+.+ ++-.+.--+.+.+.+. ++||+++..+++|+.+-++|++.+-
T Consensus 35 ~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 35 TVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 333444567778889999998887 5556677777778885 5899999999999999999998763
No 52
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.81 E-value=0.053 Score=52.24 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHh--ccCC----------hhhHHHHHHHHHH
Q 018063 126 SIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW--ARDD----------VKTRNAGIELGLW 191 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~K~~~~--~~~P~~l~~~R~lia~liLl~~~~~--~~~~----------~~~~~~~~l~G~~ 191 (361)
|+++++++.++=|...+..+.... +.++.+..++-.+++.+++++.... .+.. +..+...++..+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999988775 6899999999999998888776555 2211 1122333444444
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063 192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (361)
Q Consensus 192 ~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~ 252 (361)
...+..+.+.-++..++-..+++..+--+++.+++. +++++++..+|+|+++.+.|..+=.
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHH
Confidence 445555555667788888888888888899999996 4899999999999999999987643
No 53
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.017 Score=47.19 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063 188 LGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (361)
Q Consensus 188 ~G~~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~ 252 (361)
.-+.....|.+...++++.+.+.+ ++-.+.-.+.+.+.++ +++|+++..+++|+.+-++|++.+-
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 333444567788899999999988 5666777777888886 5899999999999999999998764
No 54
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.75 E-value=0.037 Score=52.65 Aligned_cols=117 Identities=17% Similarity=-0.007 Sum_probs=79.7
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-H--hccCChhhHHHHHHHHHHHHHHHHHH
Q 018063 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-F--WARDDVKTRNAGIELGLWVSLGYFVE 199 (361)
Q Consensus 123 ~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~-~--~~~~~~~~~~~~~l~G~~~~~~~~~~ 199 (361)
..++++.++++.+.+....++.|. .+++|....+= ..++-++-..+. . .+....|...+.++.|+....+..++
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lP-qaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~ 212 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLP-QAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFY 212 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHH-HHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHH
Confidence 467889999999888887778887 45677655542 333332222221 1 12122233344567788777788888
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHH
Q 018063 200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVL 242 (361)
Q Consensus 200 ~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~ 242 (361)
+.+.+....+.+-.+..+.+++..+.+. ++||+.+++++...+
T Consensus 213 ~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 213 LISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred HHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 8899988888888899999999999886 489998877665444
No 55
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.72 E-value=0.021 Score=47.81 Aligned_cols=64 Identities=14% Similarity=0.285 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 190 LWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 190 ~~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
++....++++..++++.+.+.+ ++..++.-+.+.+++. +++|+++..+++|+.+-++|++++-.
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 3444567788889999998888 4445677778888885 58999999999999999999988754
No 56
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.0041 Score=58.76 Aligned_cols=131 Identities=16% Similarity=0.219 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCC---CC-CcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 018063 216 LFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG---SP-PSVGDFLNFLSAIFFGIHMLRTERISRSTKKEN 290 (361)
Q Consensus 216 ~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~---~~-~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~ 290 (361)
++..+|+.++.. ++|+|-+..-..+.++-+.|-.+=+..+ +. ...|.+++..+.++-|+..+..||.....++ .
T Consensus 136 sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~-~ 214 (347)
T KOG1442|consen 136 SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD-C 214 (347)
T ss_pred chhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccC-e
Confidence 356678888886 5788887777777766666665533332 12 3689999999999999999999987655431 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHH
Q 018063 291 FLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLW 357 (361)
Q Consensus 291 ~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~ 357 (361)
...++++..+.+.++.+|...+.+..+...+++ .. .+...|..+..-|+++-.++|.
T Consensus 215 iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~-------~l---~a~~Fw~~mtLsglfgF~mgyv 271 (347)
T KOG1442|consen 215 IWRLTAYNNVNALLLFLPLLILNGEFQAVVGFP-------HL---PAIKFWILMTLSGLFGFAMGYV 271 (347)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcc-------cc---hHHHHHHHHHHHHHHHHHhhhe
Confidence 567888888888888888888777554332211 11 2456888999999998888775
No 57
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.67 E-value=0.027 Score=46.42 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 191 ~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
.....+.++..++++.|.+.+ ++-.++.-+.+.++++ +++|+++..+++|+.+-++|++++-.
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344567777888999988887 4445566677777885 58999999999999999999998754
No 58
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.25 E-value=0.08 Score=48.88 Aligned_cols=146 Identities=10% Similarity=0.083 Sum_probs=102.7
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCC--------CCcHHHHHHHHHHH
Q 018063 200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--------PPSVGDFLNFLSAI 270 (361)
Q Consensus 200 ~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~--------~~~~G~ll~L~aal 270 (361)
.-+++|.+...-++.-.+..+.++.... ++|.|++.......++-++.-++-..++. .++.|.+|+....+
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~Ncl 165 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCL 165 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhH
Confidence 3577788887777777777777777775 58999998888877776666555544442 35789999999999
Q ss_pred HHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHH
Q 018063 271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIF 350 (361)
Q Consensus 271 ~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~ 350 (361)
.-+.|.+..|+..+-.+ ..-....+|..+.+--+++.+.+++|++++. . ..+..+.....++..-|+.
T Consensus 166 ssaafVL~mrkri~ltN-f~d~dtmfYnNllslPiL~~~s~~~edws~~------n-----~annl~~d~l~am~ISgl~ 233 (309)
T COG5070 166 SSAAFVLIMRKRIKLTN-FKDFDTMFYNNLLSLPILLSFSFLFEDWSPG------N-----LANNLSVDSLMAMFISGLC 233 (309)
T ss_pred hHHHHHHHHHHhhcccc-cchhhHHHHhhhHHHHHHHHHHHHhccCCcc------h-----hhcCCChHHHHHHHHHHHH
Confidence 99999999888654322 1235567888888877888888888866421 1 1112345566677777877
Q ss_pred HHHHHHH
Q 018063 351 STGICLW 357 (361)
Q Consensus 351 ~T~lay~ 357 (361)
+-++.|.
T Consensus 234 svgiSy~ 240 (309)
T COG5070 234 SVGISYC 240 (309)
T ss_pred Hhhhhhc
Confidence 7777663
No 59
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=95.70 E-value=0.28 Score=45.75 Aligned_cols=98 Identities=10% Similarity=0.045 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc------CC-hhhHHHHHHHHHHHHHHHHHHHH
Q 018063 129 LLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR------DD-VKTRNAGIELGLWVSLGYFVEAL 201 (361)
Q Consensus 129 ~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~------~~-~~~~~~~~l~G~~~~~~~~~~~~ 201 (361)
..+++++.|+...+..|...+. ++......-.. ...+..+...... .+ .++|...+..|+....+|.+++.
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~ 227 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT-DLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFVI 227 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC-CcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899888888875432 22222221111 1111111111111 11 23566666777766678999999
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHH
Q 018063 202 GLLTSDAGRASFISLFTVIVVPLFDGM 228 (361)
Q Consensus 202 al~~tsa~~aaii~~~~Pv~v~lla~l 228 (361)
++++.+++.++.+.++.|++..+++.+
T Consensus 228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~ 254 (256)
T TIGR00688 228 AANRLPLNLLGLLQYIGPTIMMLCVSF 254 (256)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 60
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.63 E-value=0.19 Score=46.76 Aligned_cols=126 Identities=16% Similarity=0.086 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCC--------CCC
Q 018063 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG--------SPP 258 (361)
Q Consensus 188 ~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~--------~~~ 258 (361)
..+..-..+...+.+++|.+=-...+--+.-|+=+++++.+ .+++.++++...++..++||.+....+ ..+
T Consensus 91 cs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~ 170 (337)
T KOG1580|consen 91 CSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTF 170 (337)
T ss_pred HHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCccccc
Confidence 33333344555667888877555555556788888999975 577889999999999999999987652 145
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 018063 259 SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGG 314 (361)
Q Consensus 259 ~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~ 314 (361)
..|.++.+++--.=+.-.....|....+.+ ..-.+.++..+.+.+.+..-.++.+
T Consensus 171 g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~NlwStL~Lg~g~lfTG 225 (337)
T KOG1580|consen 171 GFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNLWSTLYLGAGLLFTG 225 (337)
T ss_pred chHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHHHHHHHhhhhheehh
Confidence 789999988876666666666776665532 3455667777777776554444444
No 61
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.54 E-value=0.95 Score=43.17 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHH-HhcCcccHHH----HHHHHHHHHHhhhhcc
Q 018063 180 KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHT----WFGVLISALGVGMLEC 253 (361)
Q Consensus 180 ~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii-~~~~Pv~v~lla~-ll~er~~~~~----~igl~la~~Gv~ll~~ 253 (361)
+.+...++.|++-..++..++.+.++..++.+.=+ ..++-+.+.+++. +|+|--+..+ .+++++-++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 55666777888888888999999998887776533 3566667777775 5899666433 3577777888877665
Q ss_pred CCC---------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Q 018063 254 SGS---------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEI 299 (361)
Q Consensus 254 ~~~---------~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~ 299 (361)
.+. +...|.+..+.+.+.|..|.+..|-.. . |+.....-|.
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~--~---~~~~~~lPqa 172 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFH--V---SGWSAFLPQA 172 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcC--C---ChhHhHHHHH
Confidence 421 124699999999999999999876532 2 4565555444
No 62
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.52 E-value=0.74 Score=39.42 Aligned_cols=123 Identities=12% Similarity=0.066 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHhccC-Ch---hhH-HHHHHHHHHHHHHHHHHHH
Q 018063 128 FLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARD-DV---KTR-NAGIELGLWVSLGYFVEAL 201 (361)
Q Consensus 128 l~llla~llWG~~~~~~K~~~~~~~-P~~l~~~R~lia~liLl~~~~~~~~-~~---~~~-~~~~l~G~~~~~~~~~~~~ 201 (361)
++.+++..+-+....+--...+..+ |+.-+++-+..+.+++..+....++ +. ++. ++..+-|++....-.+..+
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~ 83 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNII 83 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHH
Confidence 3445555555555554444444555 9999999999999888776654332 21 111 1222233333322334456
Q ss_pred HHhhchHHHHHHHH-HHHHHHHHHHHHH--h---cCcccHHHHHHHHHHHHHhhh
Q 018063 202 GLLTSDAGRASFIS-LFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGM 250 (361)
Q Consensus 202 al~~tsa~~aaii~-~~~Pv~v~lla~l--l---~er~~~~~~igl~la~~Gv~l 250 (361)
.++...++.+..+. .-+-+...++..+ + +++++.+|++|+++.++|+.+
T Consensus 84 ~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 84 LVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 67777777765443 3444555556553 3 567789999999999999864
No 63
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.33 E-value=0.11 Score=50.40 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=79.2
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH-HHHHHHHH
Q 018063 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEA 200 (361)
Q Consensus 122 ~~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~-~~~~~~~~ 200 (361)
+...|.++.+++.++-+.+....|......+. ...|---.. ..+ .+++.|+ .|+.. ..+....+
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~~~~~---~~~-----l~~~~W~----~G~~~~~~g~~~~~ 68 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRAGSGG---RSY-----LRRPLWW----IGLLLMVLGEILNF 68 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccccchh---hHH-----HhhHHHH----HHHHHHhcchHHHH
Confidence 34678899999999999999999876433221 001100000 000 0112232 33322 34456667
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 201 LGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 201 ~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
.++.+.|++..+-+.++.-++..+++. ++|||++++.+.|.++.++|..+++.
T Consensus 69 ~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 69 VALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 889999999998888888899999994 68999999999999999999987653
No 64
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.32 E-value=0.12 Score=41.20 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHH
Q 018063 191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLI 243 (361)
Q Consensus 191 ~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~l 243 (361)
.....+.++..++++.+.+.+ ++..++..+.+.+.+. +++|+++..|++|+.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 344567788889999999988 5666788888888885 5899999999999875
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.78 E-value=1 Score=44.53 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHHHHHhhH-------HHHHHHh-ccCCHHHHHHHHHH---HHHHHHH-HHHH---hccCC------hh-
Q 018063 123 KIRSIFLLNVITIVYASDI-------PILKAAE-EIMHPASFCAVRFV---MSAIPFL-PFVF---WARDD------VK- 180 (361)
Q Consensus 123 ~~~g~l~llla~llWG~~~-------~~~K~~~-~~~~P~~l~~~R~l---ia~liLl-~~~~---~~~~~------~~- 180 (361)
..||++.++++.+..+... +..+... .+.++.....--+. +++++.- .++. +|+++ ++
T Consensus 172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~ 251 (345)
T PRK13499 172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL 251 (345)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence 4789998888888877666 4444322 24555544443333 5555443 2222 12111 11
Q ss_pred ---h-HH---HHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HH-HHHHHHHHHHHHHhcCccc------HHHHHHHHH
Q 018063 181 ---T-RN---AGIELGLWVSLGYFVEALGLLTSDAGRASF---IS-LFTVIVVPLFDGMLGAIIP------AHTWFGVLI 243 (361)
Q Consensus 181 ---~-~~---~~~l~G~~~~~~~~~~~~al~~tsa~~aai---i~-~~~Pv~v~lla~ll~er~~------~~~~igl~l 243 (361)
. ++ ...+.|+.-+.++.++.++-...+.+.+.+ +. ++..++..+.+.++||+.+ +.-++|+++
T Consensus 252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~vl 331 (345)
T PRK13499 252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGCVV 331 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHHHH
Confidence 1 12 224556665666666666666654433333 33 5655777777777998766 334677777
Q ss_pred HHHHhhhhc
Q 018063 244 SALGVGMLE 252 (361)
Q Consensus 244 a~~Gv~ll~ 252 (361)
-++|..++.
T Consensus 332 iI~g~~lig 340 (345)
T PRK13499 332 IILAANIVG 340 (345)
T ss_pred HHHHHHHHh
Confidence 777777654
No 66
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=94.48 E-value=1.8 Score=41.49 Aligned_cols=118 Identities=8% Similarity=0.037 Sum_probs=82.3
Q ss_pred HHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc---c-----CChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018063 134 TIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA---R-----DDVKTRNAGIELGLWVSLGYFVEALGLLT 205 (361)
Q Consensus 134 ~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~---~-----~~~~~~~~~~l~G~~~~~~~~~~~~al~~ 205 (361)
++.||.-+..=|. -.+|+.+-..+-.+.-..+-+.+.+.- . .....+......|........++..|-+.
T Consensus 157 a~sf~~Ygl~RK~--~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~ 234 (293)
T COG2962 157 ALSFGLYGLLRKK--LKVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKR 234 (293)
T ss_pred HHHHHHHHHHHHh--cCCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 4455555555555 245665555555444333333333221 1 12334556667788878888899999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 206 SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 206 tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
.+-+..+++.+..|.+..+++.+ ++|.++..+.++.+.--.|+.+...
T Consensus 235 lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 235 LPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975 7899999999988888888776544
No 67
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.23 E-value=5.7 Score=38.49 Aligned_cols=192 Identities=12% Similarity=0.094 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 018063 152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM 228 (361)
Q Consensus 152 ~P~~l~~~R~lia~liLl~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l 228 (361)
++..+.+..-+.+.++-..++..++ ..++.|.....+++.....-.+.+.+++|.+=-.-.+-=+.=-+=++++..+
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~L 129 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTL 129 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHH
Confidence 5666777766666665544433322 1234455666777777666678889999976322222222222334455644
Q ss_pred -hcCcccHHHHHHHHHHHHHhhhhccC--CC--------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Q 018063 229 -LGAIIPAHTWFGVLISALGVGMLECS--GS--------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY 297 (361)
Q Consensus 229 -l~er~~~~~~igl~la~~Gv~ll~~~--~~--------~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~ 297 (361)
.++|.+..+.+...+--.|+.+.... ++ +...|.+++...-+.=++-+...+++-+++ +.++..+.++
T Consensus 130 vy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~ 208 (327)
T KOG1581|consen 130 VYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFG 208 (327)
T ss_pred HhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHH
Confidence 68899988888888888888766432 11 235788888877777677777777777654 4678888888
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH
Q 018063 298 EICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC 355 (361)
Q Consensus 298 ~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~la 355 (361)
..++.++....-....+.+. .+.++- ..+++.+.-++.+...+++.-
T Consensus 209 vNLf~~i~~~~~li~qg~~~-------~av~F~----~~hp~~~~Di~l~s~~gavGQ 255 (327)
T KOG1581|consen 209 VNLFSAILNGTYLILQGHLL-------PAVSFI----KEHPDVAFDILLYSTCGAVGQ 255 (327)
T ss_pred HHHHHHHHHHHhhhcCCCCc-------hHHHHH----HcChhHHHHHHHHHHhhhhhh
Confidence 88888887766543333221 111111 124667777777766665543
No 68
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=94.05 E-value=0.078 Score=42.84 Aligned_cols=72 Identities=13% Similarity=0.268 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHH
Q 018063 270 IFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349 (361)
Q Consensus 270 l~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv 349 (361)
++||.+.+..|+..++. |+...+++.+..+++ .++.....+... ....+...+..++++|+
T Consensus 1 ~~~a~~~~~~k~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 61 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI---SPLSITFWRFLIAGI-LLILLLILGRKP---------------FKNLSPRQWLWLLFLGL 61 (126)
T ss_pred ceeeeHHHHHHHHhccC---CHHHHHHHHHHHHHH-HHHHHHhhcccc---------------ccCCChhhhhhhhHhhc
Confidence 47899999999998886 789999999999887 555555444211 00124567888899999
Q ss_pred HHHHHHHHhhc
Q 018063 350 FSTGICLWIEV 360 (361)
Q Consensus 350 ~~T~lay~lq~ 360 (361)
+++++++.+..
T Consensus 62 ~~~~~~~~~~~ 72 (126)
T PF00892_consen 62 LGTALAYLLYF 72 (126)
T ss_pred cceehHHHHHH
Confidence 98888887653
No 69
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=92.26 E-value=0.086 Score=49.91 Aligned_cols=119 Identities=16% Similarity=0.156 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-cc----CChhhHHHHHHHHHHHHHHHHHHHH
Q 018063 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-AR----DDVKTRNAGIELGLWVSLGYFVEAL 201 (361)
Q Consensus 127 ~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~-~~----~~~~~~~~~~l~G~~~~~~~~~~~~ 201 (361)
....+.+++.-+..++..|..-...+.+..+.+-.+++.+.-++.+.. .. ...++|.....+|++.++++.+...
T Consensus 193 t~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllTm 272 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLTM 272 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHHH
Confidence 344555566666778888877555555555555445544443333221 11 1345666666789998899999999
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHH
Q 018063 202 GLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISA 245 (361)
Q Consensus 202 al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~ 245 (361)
|+|.--++..+++.++..++..+.-. ++++-+++..|.|.++-+
T Consensus 273 ~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vv 317 (346)
T KOG4510|consen 273 GLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVV 317 (346)
T ss_pred HhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeee
Confidence 99999999999999999999988885 579999999998876533
No 70
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.39 E-value=9.1 Score=33.33 Aligned_cols=126 Identities=10% Similarity=0.112 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHhccC--Ch----hhHHHHHHHHHHHHHHHHH
Q 018063 126 SIFLLNVITIVYASDIPILKAAEEIM-HPASFCAVRFVMSAIPFLPFVFWARD--DV----KTRNAGIELGLWVSLGYFV 198 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~K~~~~~~-~P~~l~~~R~lia~liLl~~~~~~~~--~~----~~~~~~~l~G~~~~~~~~~ 198 (361)
..+..+++..+-.....+--...... +|+.-.+.-++.+.+++..+.+.+.+ .. +.-++...-| .+...|.+
T Consensus 6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG-~lGa~~vt 84 (150)
T COG3238 6 YLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGG-LLGAIFVT 84 (150)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHcc-chhhhhhh
Confidence 34444555555444444433333444 59999999999999888777654321 11 1111222223 22222222
Q ss_pred H-HHHHhhchHHH-HHHHHHHHHHHHHHHHHH--h---cCcccHHHHHHHHHHHHHhhhhc
Q 018063 199 E-ALGLLTSDAGR-ASFISLFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGMLE 252 (361)
Q Consensus 199 ~-~~al~~tsa~~-aaii~~~~Pv~v~lla~l--l---~er~~~~~~igl~la~~Gv~ll~ 252 (361)
. ........++. ..++..-+-+...++..+ + +++++..+++|+++.++|++++-
T Consensus 85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 1 12233333333 334445555666666644 3 45677999999999999965543
No 71
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=91.31 E-value=1.9 Score=36.45 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc----CCCChHHHHHHHHHHHHHHHHHHHHHhccC
Q 018063 261 GDFLNFLSAIFFGIHMLRTERISRST----KKENFLPLLGYEICVVALLSTIWVLVGGWF 316 (361)
Q Consensus 261 G~ll~L~aal~~A~~~v~~rk~~~~~----~~~~~l~l~~~~~l~~al~~l~~~l~~~~~ 316 (361)
|.++++++.++.|++.++.|+..++. .+.++..+..+....+.+++++..++.|..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~ 60 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP 60 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67889999999999999999988773 356899999999999999999988887754
No 72
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=90.36 E-value=9.2 Score=37.66 Aligned_cols=155 Identities=13% Similarity=0.088 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHh--cc---------CChhhHHHHHHHHH
Q 018063 123 KIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFW--AR---------DDVKTRNAGIELGL 190 (361)
Q Consensus 123 ~~~g~l~llla~llWG~~~~~~K~~~~-~~~P~~l~~~R~lia~liLl~~~~~--~~---------~~~~~~~~~~l~G~ 190 (361)
-..|++...++.+.=|+.++-.|..-. ....++++. .+-+-+++|+... .- .+...+....+.|+
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv~---gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLVQ---GIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHHH---HHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 367999999999999999999887543 344555442 2333334444332 11 12234445556666
Q ss_pred HHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHHH--------hcCcccHHHHHHHHHHHHHhhhhccCC------
Q 018063 191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM--------LGAIIPAHTWFGVLISALGVGMLECSG------ 255 (361)
Q Consensus 191 ~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~l--------l~er~~~~~~igl~la~~Gv~ll~~~~------ 255 (361)
+-.++-..|-.+++|...+.. ++...+.-++-.++-.+ +..+-....++|++++++|+.++-..|
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~ 161 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE 161 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence 644444555567777655544 23333333333333222 223334678899999999999886532
Q ss_pred -------CCCcHHHHHHHHHHHHHHHHHHHHH
Q 018063 256 -------SPPSVGDFLNFLSAIFFGIHMLRTE 280 (361)
Q Consensus 256 -------~~~~~G~ll~L~aal~~A~~~v~~r 280 (361)
.++..|.+++++|.+.-|++.+-..
T Consensus 162 ~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 162 LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1346899999999998888776554
No 73
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=90.14 E-value=0.81 Score=44.69 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHhc----cCCHHHHHHHHHHHHHHHHH-HHHHhccC-Ch-----hhH----HHHHH
Q 018063 123 KIRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFL-PFVFWARD-DV-----KTR----NAGIE 187 (361)
Q Consensus 123 ~~~g~l~llla~llWG~~~~~~K~~~~----~~~P~~l~~~R~lia~liLl-~~~~~~~~-~~-----~~~----~~~~l 187 (361)
+..|.+..+.+.+....--++.|..+. .++++.+..+-.-++.+.++ |+...... .. +.| ....+
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 468999999999999999999998873 48999999888888888888 77554211 11 111 11122
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (361)
Q Consensus 188 ~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~ 252 (361)
..++.+..+...+..+.++++-.-.+....=-+++.+.++ +|+++++..+.+|.+++++|+.+=.
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 2333334445556777777776655554433334445554 4788889999999999999997643
No 74
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.38 E-value=5.6 Score=38.55 Aligned_cols=129 Identities=12% Similarity=0.048 Sum_probs=90.0
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHhccC----------ChhhHHHHHHHH
Q 018063 122 KKIRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWARD----------DVKTRNAGIELG 189 (361)
Q Consensus 122 ~~~~g~l~llla~llWG~~~~~~K~~~~--~~~P~~l~~~R~lia~liLl~~~~~~~~----------~~~~~~~~~l~G 189 (361)
+...|++++..-.++=|......+.+.. .++++.+.+.-.+..++.=.......+. .++-++..++..
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 3467888887777776777766665555 5899999988888777665554443321 223355666777
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhh
Q 018063 190 LWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM 250 (361)
Q Consensus 190 ~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~l 250 (361)
.+...++.+.++-++.-.+-.-+.|+.+==++..+++. .++.+++..||+|+.+-|.|+.+
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 77777777777767665444445555555677777775 58999999999999998888764
No 75
>COG2510 Predicted membrane protein [Function unknown]
Probab=88.97 E-value=3.7 Score=34.87 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhh
Q 018063 261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP 340 (361)
Q Consensus 261 G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (361)
-.++++++|+++++..+..|--.++. ||..-+..-.++..+.+..+.+..++++.. ...++..
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~v---dp~~At~IRtiVi~~~l~~v~~~~g~~~~~--------------~~~~~k~ 66 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGV---DPDFATTIRTIVILIFLLIVLLVTGNWQAG--------------GEIGPKS 66 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHHHHHHHHhcCceecc--------------cccCcce
Confidence 35789999999999999887766665 667677777777777777777766654311 0135678
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 018063 341 WVPALYTGIFSTGICLWIE 359 (361)
Q Consensus 341 wl~llylgv~~T~lay~lq 359 (361)
|..++.-| +.++++..++
T Consensus 67 ~lflilSG-la~glswl~Y 84 (140)
T COG2510 67 WLFLILSG-LAGGLSWLLY 84 (140)
T ss_pred ehhhhHHH-HHHHHHHHHH
Confidence 88888777 5666666554
No 76
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=88.80 E-value=4.5 Score=36.82 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhh
Q 018063 190 LWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM 250 (361)
Q Consensus 190 ~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~l 250 (361)
+....+..+..+-+++.++..-++...+.++++.+++. +++|+++..+++|+.+.+.|+.+
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 33344445566778899999999999999999999996 58999999999999999998754
No 77
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.57 E-value=1.5 Score=35.86 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHhccCCHH------HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHH
Q 018063 128 FLLNVITIVYASDIPILKAAEEIMHPA------SFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEAL 201 (361)
Q Consensus 128 l~llla~llWG~~~~~~K~~~~~~~P~------~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~ 201 (361)
..++.++++||.+.+++|....+.+-. ...++|-..... .+++-+.. +++ +-.+-.+++.
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~----------l~w~Y~iP-Fll---NqcgSaly~~ 71 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLF----------LNWEYLIP-FLL---NQCGSALYYL 71 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHH----------HhHHHHHH-HHH---HHhhHHHHHH
Confidence 457788999999999999876543221 111111111000 01111111 111 1223345566
Q ss_pred HHhhchHHHHH-HHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhhhhc
Q 018063 202 GLLTSDAGRAS-FISLFTVIVVPLFDGMLGAIIP-AHTWFGVLISALGVGMLE 252 (361)
Q Consensus 202 al~~tsa~~aa-ii~~~~Pv~v~lla~ll~er~~-~~~~igl~la~~Gv~ll~ 252 (361)
-+++++.+.+. +-.++.-.|+.+.+..++|+.+ ++.++|..+...|+.+.+
T Consensus 72 tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 72 TLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 67777665554 3345666788888888999987 677899999888887643
No 78
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=88.06 E-value=0.11 Score=48.60 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhhHHHH-HHHhccCCHHHHHHHHHHHHHHHHHHHHH-hcc--CChhhHHHHHHHHHHHHHHHHHHHH
Q 018063 126 SIFLLNVITIVYASDIPIL-KAAEEIMHPASFCAVRFVMSAIPFLPFVF-WAR--DDVKTRNAGIELGLWVSLGYFVEAL 201 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~-K~~~~~~~P~~l~~~R~lia~liLl~~~~-~~~--~~~~~~~~~~l~G~~~~~~~~~~~~ 201 (361)
+++..++-++.||+...+. |. +=+|.+-... ..++++++....+ ..+ .+.+.+...++-|++-..++..++-
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lG-tT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfk 78 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLG-TTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFK 78 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhh-ccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhh
Confidence 4567788889999886554 43 2344433322 2344444433332 222 2344555666677776777888899
Q ss_pred HHhhchHHHHHHH-HHHHHHHHHHHHHH-hcCcccHH----HHHHHHHHHHHhhhhccCCC---------CCcHHHHHHH
Q 018063 202 GLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAH----TWFGVLISALGVGMLECSGS---------PPSVGDFLNF 266 (361)
Q Consensus 202 al~~tsa~~aaii-~~~~Pv~v~lla~l-l~er~~~~----~~igl~la~~Gv~ll~~~~~---------~~~~G~ll~L 266 (361)
+++++.++.+.=+ .+++-+-+.+++++ |+|--+.. ..+++++-++|+.+-...+. +...|....+
T Consensus 79 a~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~ 158 (288)
T COG4975 79 AIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILL 158 (288)
T ss_pred heeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeee
Confidence 9999888887533 34555666666754 78855432 33566666777766554321 1346888888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 018063 267 LSAIFFGIHMLRTERIS 283 (361)
Q Consensus 267 ~aal~~A~~~v~~rk~~ 283 (361)
.+.+.|-.|.++.+...
T Consensus 159 iSt~GYv~yvvl~~~f~ 175 (288)
T COG4975 159 ISTLGYVGYVVLFQLFD 175 (288)
T ss_pred eeccceeeeEeeecccc
Confidence 89999999888776654
No 79
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=86.19 E-value=16 Score=34.61 Aligned_cols=158 Identities=13% Similarity=0.037 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018063 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLT 205 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~al~~ 205 (361)
|++..+++++++|++++-+|.. +.-|++.+-++-.....+.-+.+...+. ..+-....++-|.+-..++.+-.-.++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~-~p~f~p~amlgG~lW~~gN~~~vpii~~ 78 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILG-FPPFYPWAMLGGALWATGNILVVPIIKT 78 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcC-CCcceeHHHhhhhhhhcCceeehhHhhh
Confidence 4567889999999999999963 3457766655543322222222222222 2222334444555555556555666777
Q ss_pred chHHHHHHHHHHHHHHHHHHH-HH--hc---Ccc--cHHHHHHHHHHHHHhhhhccC--C--------------------
Q 018063 206 SDAGRASFISLFTVIVVPLFD-GM--LG---AII--PAHTWFGVLISALGVGMLECS--G-------------------- 255 (361)
Q Consensus 206 tsa~~aaii~~~~Pv~v~lla-~l--l~---er~--~~~~~igl~la~~Gv~ll~~~--~-------------------- 255 (361)
...+..-.+-+..-+++--.. .+ |+ |.+ +...++|+++.++|..+.... +
T Consensus 79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~ 158 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIE 158 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccc
Confidence 777777666655444333222 22 32 222 357889999999998866431 0
Q ss_pred ---C----------C-------CcHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018063 256 ---S----------P-------PSVGDFLNFLSAIFFGIHMLRTERISRS 285 (361)
Q Consensus 256 ---~----------~-------~~~G~ll~L~aal~~A~~~v~~rk~~~~ 285 (361)
. + -..|..+++++++.|+...+=...+.++
T Consensus 159 ~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 159 IEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred cccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 0 0 1368899999999999887666665554
No 80
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=80.88 E-value=13 Score=34.94 Aligned_cols=126 Identities=10% Similarity=0.008 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHhcc----------CChhhHHHHHHHHHHH
Q 018063 125 RSIFLLNVITIVYASDIPILKAAEEI--MHPASFCAVRFVMSAIPFLPFVFWAR----------DDVKTRNAGIELGLWV 192 (361)
Q Consensus 125 ~g~l~llla~llWG~~~~~~K~~~~~--~~P~~l~~~R~lia~liLl~~~~~~~----------~~~~~~~~~~l~G~~~ 192 (361)
.|-++++++-.+=|.........-.+ -+.-.+.+.-.+-+.+.+..-++..+ +....+....++++..
T Consensus 172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s 251 (337)
T KOG1580|consen 172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS 251 (337)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45666666666666666654332221 12223333333444444332222111 1222345556677777
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhh
Q 018063 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM 250 (361)
Q Consensus 193 ~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~l 250 (361)
.+++.+.+.-+.+-++-..+++..+--+|+.+.+.+ ++..++.+||+|..+-|.|+.+
T Consensus 252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 777777777777777767777777778899999965 7889999999999999998865
No 81
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=74.41 E-value=28 Score=34.88 Aligned_cols=131 Identities=12% Similarity=0.056 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHh---ccCCh------hhHHHHHHHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEI----MHPASFCAVRFVMSAIPFLPFVFW---ARDDV------KTRNAGIELGL 190 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~----~~P~~l~~~R~lia~liLl~~~~~---~~~~~------~~~~~~~l~G~ 190 (361)
..|.++.+++++++|..-++.|.-.++ +|--.+-.+=-++..++++|.++. .+.++ .+....++.|+
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 679999999999999999999865432 555555555556666666654432 12111 12222233343
Q ss_pred HH-HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhhhccC
Q 018063 191 WV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA-IIPAHTWFGVLISALGVGMLECS 254 (361)
Q Consensus 191 ~~-~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~ll~e-r~~~~~~igl~la~~Gv~ll~~~ 254 (361)
.. +..=+++..|.-.|++-.+++-+.++.-..++...++|+ ..+...++|.+.-|+|-+++...
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence 32 344567888888898888877776665556666667754 56799999999988888777554
No 82
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.83 E-value=2.5 Score=41.14 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=77.8
Q ss_pred hhccchHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCCh-hhHHHHH-HHHHHHHHHH
Q 018063 119 FASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV-KTRNAGI-ELGLWVSLGY 196 (361)
Q Consensus 119 ~~~~~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~-~~~~~~~-l~G~~~~~~~ 196 (361)
++.+...|.++.+.+.++.|.++..-|...-.... ...|.--+.- +..+ ..|+.++ .+++. -
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~ra~~gg~---------~yl~~~~Ww~G~ltm~vG----e 78 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLRAGEGGY---------GYLKEPLWWAGMLTMIVG----E 78 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hcccccCCCc---------chhhhHHHHHHHHHHHHH----h
Confidence 34456789999999999999999999986533221 1111110000 0001 1232222 22333 3
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063 197 FVEALGLLTSDAGRASFISLFTVIVVPLFD-GMLGAIIPAHTWFGVLISALGVGMLECS 254 (361)
Q Consensus 197 ~~~~~al~~tsa~~aaii~~~~Pv~v~lla-~ll~er~~~~~~igl~la~~Gv~ll~~~ 254 (361)
..-|.+..+.|++..+-+.++..+...+++ .+++||++....+|.+++++|-.+++..
T Consensus 79 i~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 79 IANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 333344556777777777788888888998 4689999999999999999999887653
No 83
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=66.79 E-value=68 Score=29.01 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 018063 259 SVGDFLNFLSAIFFGIHMLRTERISRST 286 (361)
Q Consensus 259 ~~G~ll~L~aal~~A~~~v~~rk~~~~~ 286 (361)
..|....+.+.++-+.-.++.++..++.
T Consensus 84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 84 VVGLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 3455555555555555666666655543
No 84
>PRK02237 hypothetical protein; Provisional
Probab=63.68 E-value=82 Score=25.88 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=23.6
Q ss_pred HHHHH-hcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 224 LFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 224 lla~l-l~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
+..++ -++|+++..++|..++++|+.++..
T Consensus 75 ~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 75 LWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 33443 3778889999999999999988753
No 85
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=62.80 E-value=3.9 Score=38.55 Aligned_cols=95 Identities=19% Similarity=0.117 Sum_probs=51.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-
Q 018063 149 EIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG- 227 (361)
Q Consensus 149 ~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~- 227 (361)
++++.+.--+.-+.++++++-..-.-++.++..+ .-.+.|+.-..++.+.+++-+....+.+=.+..+..+...+-+.
T Consensus 177 ~g~saiLPqAiGMv~~ali~~~~~~~~~~~K~t~-~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl 255 (288)
T COG4975 177 DGLSAILPQAIGMVIGALILGFFKMEKRFNKYTW-LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGIL 255 (288)
T ss_pred cchhhhhHHHHHHHHHHHHHhhcccccchHHHHH-HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEE
Confidence 4555555555556666655432110011122222 33456776666677766766655544443444555555556664
Q ss_pred HhcCcccHHHHHHHHHH
Q 018063 228 MLGAIIPAHTWFGVLIS 244 (361)
Q Consensus 228 ll~er~~~~~~igl~la 244 (361)
++|||.+++++..+.+|
T Consensus 256 ~L~ekKtkkEm~~v~iG 272 (288)
T COG4975 256 FLGEKKTKKEMVYVIIG 272 (288)
T ss_pred EEeccCchhhhhhhhhh
Confidence 58999998877554443
No 86
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=60.58 E-value=13 Score=31.35 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Q 018063 207 DAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGV 248 (361)
Q Consensus 207 sa~~aaii~~~~Pv~v~lla~ll~er~~~~~~igl~la~~Gv 248 (361)
+.-.++++.|..|++..+++.++...+....+.+++.+++|+
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l 107 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGL 107 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777888888888776665555444555555444444
No 87
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=60.05 E-value=17 Score=31.45 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=29.2
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 018063 202 GLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALG 247 (361)
Q Consensus 202 al~~tsa~~aaii~~~~Pv~v~lla~ll~er~~~~~~igl~la~~G 247 (361)
|+..=+.-.+++++|+.|++..+++.++-+++.....+.++.++.|
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg 113 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLG 113 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444455667788899999998888776555555444444444433
No 88
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=59.36 E-value=72 Score=30.79 Aligned_cols=91 Identities=10% Similarity=0.035 Sum_probs=65.2
Q ss_pred HHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC----CC-cHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Q 018063 224 LFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS----PP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY 297 (361)
Q Consensus 224 lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~----~~-~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~ 297 (361)
+.+.+ -+.|.+....++..+-.+|+++....|. ++ ..|..+.-+|-++=|+---+..|..+..+ .+...+.++
T Consensus 148 iggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~-~ss~Emvfy 226 (367)
T KOG1582|consen 148 IGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNP-ASSSEMVFY 226 (367)
T ss_pred heeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCC-CCcceEEEe
Confidence 34444 4788999999999999999998877653 33 47887777776666665555667666654 356778888
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 018063 298 EICVVALLSTIWVLVGGW 315 (361)
Q Consensus 298 ~~l~~al~~l~~~l~~~~ 315 (361)
...+|.+..+......++
T Consensus 227 Sy~iG~vflf~~mvlTge 244 (367)
T KOG1582|consen 227 SYGIGFVFLFAPMVLTGE 244 (367)
T ss_pred eecccHHHHHHHHHhccc
Confidence 888888877777666654
No 89
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.90 E-value=82 Score=30.76 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHH
Q 018063 125 RSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFV 172 (361)
Q Consensus 125 ~g~l~llla~llWG~~~~~~K~~~~--~~~P~~l~~~R~lia~liLl~~~ 172 (361)
.|+.++....+.-....+..|...+ +..-+.++++-.+++.+.+..+.
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~ 206 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILS 206 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHH
Confidence 3566666666655555666665443 35556666666666665554443
No 90
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=57.51 E-value=44 Score=31.66 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=38.6
Q ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHhccC--------CHHHHHHHH----HHHHHHHHHHHHHhccC
Q 018063 121 SKKIRSIFLLNVITIVYASDIPILKAAEEIM--------HPASFCAVR----FVMSAIPFLPFVFWARD 177 (361)
Q Consensus 121 ~~~~~g~l~llla~llWG~~~~~~K~~~~~~--------~P~~l~~~R----~lia~liLl~~~~~~~~ 177 (361)
++|..|.++.+++.++.|++++-+++..++- +++..+|-- ++.+.+.++.++..+|.
T Consensus 179 ~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn 247 (254)
T PF07857_consen 179 KKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRN 247 (254)
T ss_pred cchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcC
Confidence 3567899999999999999999999987654 333333332 44455555555555543
No 91
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=57.34 E-value=99 Score=25.27 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.7
Q ss_pred cCcccHHHHHHHHHHHHHhhhhcc
Q 018063 230 GAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 230 ~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
+.|+.+..|+|..++++|+.++..
T Consensus 81 g~~pdr~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 81 GVRPDRYDWIGAAICLAGVAVILF 104 (109)
T ss_pred CcCCcHHHhhhHHHHHhceeeeEe
Confidence 667779999999999999987764
No 92
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=55.43 E-value=99 Score=25.34 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=25.0
Q ss_pred HHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 221 VVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 221 ~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
...+..+. =++|+.+..++|..++++|+.++..
T Consensus 70 ~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 70 ASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 33344443 3778889999999999999998764
No 93
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=54.55 E-value=18 Score=31.46 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=18.4
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHhc
Q 018063 203 LLTSDAGRASFISLFTVIVVPLFDGMLG 230 (361)
Q Consensus 203 l~~tsa~~aaii~~~~Pv~v~lla~ll~ 230 (361)
+..-+.-.++++.|+.|++.++++.++.
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667788888988877765443
No 94
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=54.09 E-value=1.9e+02 Score=29.67 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 018063 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR 176 (361)
Q Consensus 126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~ 176 (361)
|++.+.+.-+.+-..-+..| ..++|++-...=..++...++.+.+..+
T Consensus 301 giLFI~LTF~~fflfE~~~~---~~iHpiQY~LVGlAl~lFYlLLLSlSEh 348 (430)
T PF06123_consen 301 GILFIGLTFLAFFLFELLSK---LRIHPIQYLLVGLALVLFYLLLLSLSEH 348 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444333333333333 2699999887766655555555444443
No 95
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=53.39 E-value=1.7e+02 Score=27.43 Aligned_cols=51 Identities=20% Similarity=0.039 Sum_probs=25.7
Q ss_pred hcCcccHHHHHHHHHHHHHhhhhccC--C---CCCcHHHHHHHHHHHHHHHHHHHH
Q 018063 229 LGAIIPAHTWFGVLISALGVGMLECS--G---SPPSVGDFLNFLSAIFFGIHMLRT 279 (361)
Q Consensus 229 l~er~~~~~~igl~la~~Gv~ll~~~--~---~~~~~G~ll~L~aal~~A~~~v~~ 279 (361)
+++|..-....|.+.+...++++.+- . .......+.+.++|+.+..|.++-
T Consensus 159 ~qtK~DFt~~~~~l~~~l~vl~~~g~I~~~f~~~~~~~~vya~lgAllf~~yl~~D 214 (237)
T KOG2322|consen 159 LQTKYDFTSLGGFLFALLIVLLLFGLIFLFFPYGPILVMVYAALGALLFCGYLVYD 214 (237)
T ss_pred EeeccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHhh
Confidence 45554444444544444444444330 0 112345566677777777776653
No 96
>PRK11715 inner membrane protein; Provisional
Probab=53.18 E-value=2e+02 Score=29.51 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=18.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 018063 150 IMHPASFCAVRFVMSAIPFLPFVFWAR 176 (361)
Q Consensus 150 ~~~P~~l~~~R~lia~liLl~~~~~~~ 176 (361)
.++|++-...=..++...++.+.+..+
T Consensus 328 ~iHpiQYlLVGlAl~lFYLLLLSlSEH 354 (436)
T PRK11715 328 RIHPVQYLLVGLALVLFYLLLLSLSEH 354 (436)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999887766666655555555443
No 97
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=51.04 E-value=2.5e+02 Score=27.57 Aligned_cols=128 Identities=15% Similarity=0.147 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHHH-hccC---------Chh----hHHH
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEEIM-----HPASFCAVRFVMSAIPFLPFVF-WARD---------DVK----TRNA 184 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~~~-----~P~~l~~~R~lia~liLl~~~~-~~~~---------~~~----~~~~ 184 (361)
..|..+...+.++=|.-+.+.+..+++- +|+...+-=.-.-.+.+++..+ ..+. +.. .++.
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 4688888888888888888888877643 3444443322222233333322 2221 001 1111
Q ss_pred HHHHHHHHHHHHH---HHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhh
Q 018063 185 GIELGLWVSLGYF---VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML 251 (361)
Q Consensus 185 ~~l~G~~~~~~~~---~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll 251 (361)
...+++.....+. ..+.=+..|+.-..++..-.--+.+.+++. +.+++++-..|.|+.++..|+.+=
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 1111211111221 222223334332222222222344555664 578999999999999999998765
No 98
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=49.15 E-value=79 Score=28.01 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=53.3
Q ss_pred cccHHHHHHHHH-------HHHHhhhhccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCChHHHHHHHHH
Q 018063 232 IIPAHTWFGVLI-------SALGVGMLECSG-SPPSVGDFLNFLSAIFFGIHMLRTERISRSTK---KENFLPLLGYEIC 300 (361)
Q Consensus 232 r~~~~~~igl~l-------a~~Gv~ll~~~~-~~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~---~~~~l~l~~~~~l 300 (361)
.+...+.+|+.+ +..|+.++.... .++......++.++++|++-.++.....+|.+ -+.|..-..+.+.
T Consensus 96 sP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~iali 175 (193)
T COG4657 96 SPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALI 175 (193)
T ss_pred CHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHH
Confidence 334678888775 667888876543 34567788899999999998888776665532 2234555556666
Q ss_pred HHHHHHHHHH
Q 018063 301 VVALLSTIWV 310 (361)
Q Consensus 301 ~~al~~l~~~ 310 (361)
.++++++.+.
T Consensus 176 tagLmSlaFm 185 (193)
T COG4657 176 TAGLMSLAFM 185 (193)
T ss_pred HHHHHHHHHc
Confidence 7777766554
No 99
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=48.36 E-value=1.1e+02 Score=28.81 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 018063 151 MHPASFCAVRFVMSAIPFLPF 171 (361)
Q Consensus 151 ~~P~~l~~~R~lia~liLl~~ 171 (361)
.--+...++.-+++..+++.+
T Consensus 183 f~d~dtmfYnNllslPiL~~~ 203 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSF 203 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHH
Confidence 444455555555555555544
No 100
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=48.28 E-value=2.6e+02 Score=26.87 Aligned_cols=18 Identities=11% Similarity=0.403 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018063 294 LLGYEICVVALLSTIWVL 311 (361)
Q Consensus 294 l~~~~~l~~al~~l~~~l 311 (361)
-..|...+|-++.+++..
T Consensus 244 ~~eW~~AfGL~vTLVWLY 261 (274)
T PF12811_consen 244 KMEWYAAFGLLVTLVWLY 261 (274)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 345666666666665543
No 101
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=44.19 E-value=2.4e+02 Score=25.41 Aligned_cols=14 Identities=0% Similarity=0.026 Sum_probs=7.4
Q ss_pred HHHHHHHhhHHHHH
Q 018063 132 VITIVYASDIPILK 145 (361)
Q Consensus 132 la~llWG~~~~~~K 145 (361)
+-+++.|....+.+
T Consensus 92 if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 92 IFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHhh
Confidence 34455565555555
No 102
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=43.47 E-value=7.8 Score=37.18 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHH--HhcCccc-HHHHHHHHHHHHHhhhhcc---CCCCCcHHHHHHH
Q 018063 206 SDAGRASFISLFTVIVVPLFDG--MLGAIIP-AHTWFGVLISALGVGMLEC---SGSPPSVGDFLNF 266 (361)
Q Consensus 206 tsa~~aaii~~~~Pv~v~lla~--ll~er~~-~~~~igl~la~~Gv~ll~~---~~~~~~~G~ll~L 266 (361)
.+-+...++.+.+.+++.++-. +||+|+- +...+++++-++-+++... .+....+|+++.+
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~ 113 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILF 113 (381)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3333344555555554444432 4677764 5566666555443333221 1333456665433
No 103
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=42.13 E-value=1.4e+02 Score=28.90 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccC---C----------C----C---CcHHHHHHHHHHHHHHH
Q 018063 216 LFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS---G----------S----P---PSVGDFLNFLSAIFFGI 274 (361)
Q Consensus 216 ~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~---~----------~----~---~~~G~ll~L~aal~~A~ 274 (361)
+-.++..++++++ .|+|.+.+|+.++++--+|+++-... + + + +..|+.+..++-+.-|.
T Consensus 99 sgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~ 178 (330)
T KOG1583|consen 99 SGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAY 178 (330)
T ss_pred cCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHH
Confidence 3456677888875 68899999999999999999876432 1 0 1 24788888888888787
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 018063 275 HMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVG 313 (361)
Q Consensus 275 ~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~ 313 (361)
.-+..++.-+++++ ++-+..++.-. +.+|..++.
T Consensus 179 mgiyqE~~Y~kyGK-h~~EalFytH~----LsLP~Flf~ 212 (330)
T KOG1583|consen 179 MGIYQETTYQKYGK-HWKEALFYTHF----LSLPLFLFM 212 (330)
T ss_pred HHHHHHHHHHHhcC-ChHHHHHHHHH----hccchHHHh
Confidence 77777777777653 55666665443 344544443
No 104
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=36.31 E-value=4.2e+02 Score=25.87 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHh----c-c--------CChhhHHH----
Q 018063 124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW----A-R--------DDVKTRNA---- 184 (361)
Q Consensus 124 ~~g~l~llla~llWG~~~~~~K~~~~--~~~P~~l~~~R~lia~liLl~~~~~----~-~--------~~~~~~~~---- 184 (361)
..|.++.+.+-++-+..++.=...+. +++|.+.+.+.-+++..++-.+... . . ..+.+|..
T Consensus 175 itGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~ 254 (372)
T KOG3912|consen 175 ITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAA 254 (372)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHH
Confidence 56788888888888888877644333 6999999999999986655443321 1 1 11233321
Q ss_pred --------HHHHHHHHHHHHHHHHHHH---hhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhh
Q 018063 185 --------GIELGLWVSLGYFVEALGL---LTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM 250 (361)
Q Consensus 185 --------~~l~G~~~~~~~~~~~~al---~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~l 250 (361)
..+.|....+.+ +-+.|+ ++.|+++=.++-.+=..++=+++. +..|+....++.|.++-..|+.+
T Consensus 255 ~~e~p~l~val~~~~vSiAf-fNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~l 331 (372)
T KOG3912|consen 255 LQESPSLAVALIGFTVSIAF-FNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIIL 331 (372)
T ss_pred hcCCchhHHHHhhhhhheee-eeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233222221 112233 245666666666654444444443 35788899999999988888865
No 105
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=35.73 E-value=55 Score=31.30 Aligned_cols=129 Identities=14% Similarity=0.055 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCCh----hhHHHHH--HHHHHHHHHH
Q 018063 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV----KTRNAGI--ELGLWVSLGY 196 (361)
Q Consensus 123 ~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~----~~~~~~~--l~G~~~~~~~ 196 (361)
..+|-.+++.++-+.+.+.+.-.......|-.++...-.++++++-.+=....+... .++.... ...+.++..|
T Consensus 164 p~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MFllY 243 (336)
T KOG2766|consen 164 PVKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMFLLY 243 (336)
T ss_pred CccCcEEEEecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHHHHH
Confidence 366778888888999999998888888899999988888888887766544433221 1222221 2223334444
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhhhc
Q 018063 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLE 252 (361)
Q Consensus 197 ~~~~~al~~tsa~~aaii~~~~Pv~v~lla~ll~er~~~~~~igl~la~~Gv~ll~ 252 (361)
.+.-.=++..+++.-.+=.-+.-.|..++ ..|+-++.+.-.++......|..+-.
T Consensus 244 sl~pil~k~~~aT~~nlslLTsDmwsl~i-~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 244 SLAPILIKTNSATMFNLSLLTSDMWSLLI-RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred HhhHHheecCCceEEEhhHhHHHHHHHHH-HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 44444444444432221112233444443 45676788888888888888876653
No 106
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=33.04 E-value=1.9e+02 Score=24.44 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 018063 261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGW 315 (361)
Q Consensus 261 G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~ 315 (361)
..++++++...-++...++.++.++.. ++..-+++.+..+.+.+....++.+.
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~ 54 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGR 54 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356788889999999999999998873 58888999999988888777776654
No 107
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=30.74 E-value=1.9e+02 Score=20.62 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018063 236 HTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRS 285 (361)
Q Consensus 236 ~~~igl~la~~Gv~ll~~~~~~~~~G~ll~L~aal~~A~~~v~~rk~~~~ 285 (361)
...+|..+-++|++++..||. |.+..+++-...|-..-..||..++
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp----G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP----GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456888899999999888863 5556666666666666666665543
No 108
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=30.21 E-value=30 Score=29.54 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=24.9
Q ss_pred hccchHHHHHHHHHHHHHHhhHHHHHHHh
Q 018063 120 ASKKIRSIFLLNVITIVYASDIPILKAAE 148 (361)
Q Consensus 120 ~~~~~~g~l~llla~llWG~~~~~~K~~~ 148 (361)
.+++..|++++-+-.++|+..++..|-+-
T Consensus 101 lsn~~LgwIL~gVf~lIWslY~~~~~~l~ 129 (138)
T PF07123_consen 101 LSNNLLGWILLGVFGLIWSLYFVYTSTLD 129 (138)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhccccC
Confidence 47788999999999999999999888644
No 109
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.14 E-value=1.6e+02 Score=23.93 Aligned_cols=27 Identities=11% Similarity=-0.076 Sum_probs=22.5
Q ss_pred HHhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063 227 GMLGAIIPAHTWFGVLISALGVGMLEC 253 (361)
Q Consensus 227 ~ll~er~~~~~~igl~la~~Gv~ll~~ 253 (361)
..+||.+++..+.|.++-..|+.++..
T Consensus 89 fyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 89 FYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 348999999999999888888887754
No 110
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=25.60 E-value=5.7e+02 Score=24.34 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=20.9
Q ss_pred HHhcCcccH-HHHHHHHHHHHHhhhhccCCCC
Q 018063 227 GMLGAIIPA-HTWFGVLISALGVGMLECSGSP 257 (361)
Q Consensus 227 ~ll~er~~~-~~~igl~la~~Gv~ll~~~~~~ 257 (361)
.++|++.++ |-++|.++|-+..+++..+...
T Consensus 25 ~~~~~~~~~~Rll~~A~~Gal~~~~~~~p~~~ 56 (293)
T PF03419_consen 25 RLLKRRASRWRLLLGAAIGALYSLLIFFPPLS 56 (293)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 578888885 5567777777766666656443
No 111
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=25.09 E-value=9.5e+02 Score=26.48 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhh
Q 018063 209 GRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML 251 (361)
Q Consensus 209 ~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll 251 (361)
+.+.++..+.|+-++.++.+ ..+|.+...+.+.+-.++|.+-+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45566777788877777754 33443233455555555565543
No 112
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=24.19 E-value=8e+02 Score=25.25 Aligned_cols=54 Identities=11% Similarity=-0.020 Sum_probs=31.6
Q ss_pred CcccHHHHHHHHHHHHHhh----hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018063 231 AIIPAHTWFGVLISALGVG----MLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284 (361)
Q Consensus 231 er~~~~~~igl~la~~Gv~----ll~~~~~~~~~G~ll~L~aal~~A~~~v~~rk~~~ 284 (361)
++-++||.+-...+++|++ +...+..+...+.++.+++.++|....+....+..
T Consensus 95 D~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP 152 (477)
T PF11700_consen 95 DYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLP 152 (477)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444443 22223344578888889999999887777665443
No 113
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=23.85 E-value=5.3e+02 Score=23.05 Aligned_cols=34 Identities=6% Similarity=0.081 Sum_probs=20.1
Q ss_pred HHHHHHHhcCcccHHHHHHH--HHHHHHhhhhccCC
Q 018063 222 VPLFDGMLGAIIPAHTWFGV--LISALGVGMLECSG 255 (361)
Q Consensus 222 v~lla~ll~er~~~~~~igl--~la~~Gv~ll~~~~ 255 (361)
..+..++.++|+++.+|+.. ++.|.|..+...++
T Consensus 36 ~~~~~~~~~~~v~~m~~is~~lv~vFGglTl~~~d~ 71 (178)
T TIGR00997 36 AIGLSYVKYKKVEKMQWISFVLIVVFGGLTLIFHDS 71 (178)
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHhCCh
Confidence 33444566789998887544 34455555555443
No 114
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.34 E-value=4.4e+02 Score=26.43 Aligned_cols=81 Identities=10% Similarity=0.148 Sum_probs=43.0
Q ss_pred HHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH-----HHhccCChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 018063 137 YASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPF-----VFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA 211 (361)
Q Consensus 137 WG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~-----~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~a 211 (361)
|+.+.-++|.+.+++--+++--.-++++-++...+ +.+++....+.-.-+++=.+...+..+.+.|.++.+++.|
T Consensus 201 Ws~slY~i~ql~~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilmWtLqli~lvl~Yfsvq~p~~a~A 280 (452)
T KOG3817|consen 201 WSISLYVIKQLADNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILMWTLQLIGLVLAYFSVQHPSAAIA 280 (452)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 77788888888888877777666666665443332 3333221100000111111111223344567888888887
Q ss_pred HHHHHH
Q 018063 212 SFISLF 217 (361)
Q Consensus 212 aii~~~ 217 (361)
++|+.+
T Consensus 281 ~iI~~l 286 (452)
T KOG3817|consen 281 AIIMVL 286 (452)
T ss_pred HHHHHH
Confidence 766643
No 115
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=22.85 E-value=1e+03 Score=26.06 Aligned_cols=27 Identities=4% Similarity=0.053 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCh
Q 018063 153 PASFCAVRFVMSAIPFLPFVFWARDDV 179 (361)
Q Consensus 153 P~~l~~~R~lia~liLl~~~~~~~~~~ 179 (361)
-..+..+|..++++.+..++.+++.++
T Consensus 92 ~~~~~~lk~~lag~~~~~~l~~~~~~~ 118 (843)
T PF09586_consen 92 ILLLIILKIGLAGLFFYLYLRKFKKSR 118 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 345688899999998887766554433
No 116
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=22.65 E-value=7.2e+02 Score=24.19 Aligned_cols=105 Identities=12% Similarity=0.050 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccC-----------ChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 018063 151 MHPASFCAVRFVMSAIPFLPFVFWARD-----------DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTV 219 (361)
Q Consensus 151 ~~P~~l~~~R~lia~liLl~~~~~~~~-----------~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~P 219 (361)
-+..+++++.+.++.+.++..+...+. +.+.....++.....+++..+...=++.-.+..++.+...==
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRK 297 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARK 297 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHh
Confidence 355677888888888877766544321 223333333434333333222212223344555555555555
Q ss_pred HHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCC
Q 018063 220 IVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (361)
Q Consensus 220 v~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~ 255 (361)
..+.+++.+ |.+..+-....+.++-+.|+++=+.+.
T Consensus 298 avTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 298 AVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 677788864 677778777777778888888765543
Done!