Query 018063
Match_columns 361
No_of_seqs 384 out of 1411
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.9 0.00011 3.8E-09 59.3 11.2 64 191-254 39-104 (110)
2 2i68_A Protein EMRE; transmemb 97.7 0.0001 3.5E-09 62.0 8.0 63 192-254 40-104 (137)
3 4dve_A Biotin transporter BIOY 18.1 4.6E+02 0.016 22.5 9.2 57 217-273 50-113 (198)
4 3kxt_A Chromatin protein CREN7 12.9 1.1E+02 0.0036 21.0 2.0 27 60-86 3-32 (56)
5 3ioz_B T-cell surface glycopro 9.4 82 0.0028 20.7 0.4 21 66-86 14-34 (45)
6 2yvc_D Neprilysin; protein-pep 7.1 1E+02 0.0036 17.4 0.2 8 71-78 18-25 (26)
7 1jmt_B Splicing factor U2AF 65 6.0 1.8E+02 0.0061 17.1 0.8 15 71-85 3-17 (28)
8 1zla_K Latent nuclear antigen; 5.4 2.1E+02 0.0071 16.0 0.8 9 79-87 2-10 (26)
9 1zkz_A Growth/differentiation 5.3 1.9E+02 0.0066 22.3 0.8 25 17-41 80-110 (110)
10 1ew4_A CYAY protein; friedreic 4.9 2.6E+02 0.0088 21.6 1.3 24 59-82 39-67 (106)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.91 E-value=0.00011 Score=59.34 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063 191 WVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (361)
Q Consensus 191 ~~~~~~~~~~~al~~tsa~~aaii-~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~ 254 (361)
.....+.++..++++.+.+.+.-+ .++.|+++.++++ +++|++++.+++|+.+.++|++++...
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345667788899999999999777 7999999999996 589999999999999999999988654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.70 E-value=0.0001 Score=62.00 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063 192 VSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (361)
Q Consensus 192 ~~~~~~~~~~al~~tsa~~aaii-~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~ 254 (361)
....|.++..++++.+++.+..+ .++.|+++.++++ +++|+++..+++|+++.++|++++...
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44668888999999999999877 8999999999996 589999999999999999999988543
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=18.15 E-value=4.6e+02 Score=22.48 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhhhhccC-CC-----CCcHHHHHHHHHHHHHH
Q 018063 217 FTVIVVPLFDGMLGAIIP-AHTWFGVLISALGVGMLECS-GS-----PPSVGDFLNFLSAIFFG 273 (361)
Q Consensus 217 ~~Pv~v~lla~ll~er~~-~~~~igl~la~~Gv~ll~~~-~~-----~~~~G~ll~L~aal~~A 273 (361)
++.+.+.+.+.+++.|.. ....+=++++.+|+=+.... ++ +...|.+++..-+..-.
T Consensus 50 lQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~gPTgGYLiGF~~aA~v~ 113 (198)
T 4dve_A 50 LQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTPFLI 113 (198)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCCCchhHHhcchhHHHHHHHHHHHHH
Confidence 566777777788888877 56777788899998777654 21 23568877765544333
No 4
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=12.93 E-value=1.1e+02 Score=21.02 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=21.2
Q ss_pred ceeeccccccc---CCCccccccCCCCccc
Q 018063 60 TLHFTNLTHII---KNKCTWVIKAKGNDEA 86 (361)
Q Consensus 60 ~~~~~~~~~~~---~~~~~~~~~~~g~~~~ 86 (361)
.|.+..|++.. .|+.-|+..|+|+..-
T Consensus 3 ~vkvk~p~G~e~~L~P~KvWvL~P~GrkGV 32 (56)
T 3kxt_A 3 PVKVKTPAGKEAELVPEKVWALAPKGRKGV 32 (56)
T ss_dssp CEEEECTTSCEEEECCSEEEEECCTTSCCE
T ss_pred ceEeeCCCCCEEEEeeeEEEEEcCCCCCce
Confidence 46667777654 8999999999998764
No 5
>3ioz_B T-cell surface glycoprotein CD3 zeta chain; protein-protein complex, cell membrane, lipoprotein, membran myristate, viral immunoevasion, virulence; 3.70A {Homo sapiens}
Probab=9.35 E-value=82 Score=20.73 Aligned_cols=21 Identities=10% Similarity=-0.094 Sum_probs=18.3
Q ss_pred cccccCCCccccccCCCCccc
Q 018063 66 LTHIIKNKCTWVIKAKGNDEA 86 (361)
Q Consensus 66 ~~~~~~~~~~~~~~~~g~~~~ 86 (361)
|.++|.+.|.|.+..+|.||.
T Consensus 14 p~~~q~~n~~YneLn~grree 34 (45)
T 3ioz_B 14 PAYQQGQNQLYNELNLGRREE 34 (45)
T ss_pred cccccccchHHHHhCcCchhh
Confidence 677888889999999999984
No 6
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=7.15 E-value=1e+02 Score=17.36 Aligned_cols=8 Identities=25% Similarity=0.062 Sum_probs=5.7
Q ss_pred CCCccccc
Q 018063 71 KNKCTWVI 78 (361)
Q Consensus 71 ~~~~~~~~ 78 (361)
|.||||+.
T Consensus 18 kkk~rws~ 25 (26)
T 2yvc_D 18 KKKQRXXX 25 (26)
T ss_pred chhhcccc
Confidence 55699974
No 7
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=5.97 E-value=1.8e+02 Score=17.14 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=9.3
Q ss_pred CCCccccccCCCCcc
Q 018063 71 KNKCTWVIKAKGNDE 85 (361)
Q Consensus 71 ~~~~~~~~~~~g~~~ 85 (361)
+++..|..+|||=..
T Consensus 3 ~p~~~WDvpP~GyE~ 17 (28)
T 1jmt_B 3 KVRKYWDVPPPGFEH 17 (28)
T ss_dssp ---CCBTCCCTTCTT
T ss_pred CcccccCCCCCCccc
Confidence 345579999998654
No 8
>1zla_K Latent nuclear antigen; latency associated nuclear antigen (LANA), kaposi'S sarcoma herpes virus (KSHV), nucleosome core particle, chromatin; 2.90A {Xenopus laevis}
Probab=5.43 E-value=2.1e+02 Score=15.98 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=6.1
Q ss_pred cCCCCcccc
Q 018063 79 KAKGNDEAI 87 (361)
Q Consensus 79 ~~~g~~~~~ 87 (361)
.|||||-..
T Consensus 2 appgmrlrs 10 (26)
T 1zla_K 2 APPGMRLRS 10 (26)
T ss_pred CCCcceeec
Confidence 378888753
No 9
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=5.27 E-value=1.9e+02 Score=22.33 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=17.7
Q ss_pred ccchhheeecc-Cccee-----EEecccccc
Q 018063 17 SSMAMTYYYAT-KPTWK-----IVTTDCTCS 41 (361)
Q Consensus 17 ~~~~~~~~~~~-~~~~~-----~~~~~~~~~ 41 (361)
+++.|.||-.. +..+| .+..+|.|+
T Consensus 80 ~~ls~ly~d~~~~v~~~~~~~~Mvv~~CgC~ 110 (110)
T 1zkz_A 80 SPISVLYKDDMGVPTLKYHYEGMSVAECGCR 110 (110)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEEEEEEEC
T ss_pred ccEEEEEEeCCCCEEEeeEeCCEEEEecccC
Confidence 45677777653 56677 788899985
No 10
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=4.89 E-value=2.6e+02 Score=21.56 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=16.7
Q ss_pred Cceeeccccccc-----CCCccccccCCC
Q 018063 59 KTLHFTNLTHII-----KNKCTWVIKAKG 82 (361)
Q Consensus 59 ~~~~~~~~~~~~-----~~~~~~~~~~~g 82 (361)
=|+.|.+-.+++ |+||=|-+-|-|
T Consensus 39 Lti~f~~~~~~VINkQ~P~~QIWlaSp~s 67 (106)
T 1ew4_A 39 LTITFENGSKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp EEEECTTSCEEEEEEETTTTEEEEECSSC
T ss_pred EEEEECCCCEEEEeCCchhhhheEecCCC
Confidence 366676666544 899999887654
Done!