BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018064
         (361 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
          Perniciosa In Complex With Cyclosporin A
 pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
          Perniciosa In Complex With Cyclosporin A
          Length = 164

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 6  EMVPGKRFDRYHEL--GQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLH 57
          E VP K    + EL  GQH FG K  ++  V  Q +++ G    +  TGGKS++
Sbjct: 26 EAVP-KTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIY 78


>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
          Perniciosa
          Length = 164

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 6  EMVPGKRFDRYHEL--GQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLH 57
          E VP K    + EL  GQH FG K  ++  V  Q +++ G    +  TGGKS++
Sbjct: 27 EAVP-KTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIY 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,841,487
Number of Sequences: 62578
Number of extensions: 364799
Number of successful extensions: 729
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 8
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)